Query 007292
Match_columns 609
No_of_seqs 147 out of 389
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 22:07:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fji_1 Exocyst complex compone 100.0 1.7E-33 5.7E-38 300.8 14.5 205 388-595 1-243 (399)
2 3swh_A MUNC13-1, protein UNC-1 97.6 0.0012 4.1E-08 67.8 16.5 125 394-518 9-139 (341)
3 3vkg_A Dynein heavy chain, cyt 74.1 2.3E+02 0.008 37.4 23.7 67 24-98 1893-1964(3245)
4 3na7_A HP0958; flagellar bioge 62.7 1.1E+02 0.0038 29.3 19.2 11 182-192 151-161 (256)
5 3iv1_A Tumor susceptibility ge 58.1 63 0.0022 25.0 9.0 44 42-85 5-48 (78)
6 2etd_A LEMA protein; bromodoma 54.0 1.1E+02 0.0039 27.4 10.9 23 30-52 12-34 (171)
7 1oxz_A ADP-ribosylation factor 51.6 1.4E+02 0.0049 27.2 11.6 25 17-41 37-63 (186)
8 2l3l_A Tubulin-specific chaper 50.6 77 0.0026 26.3 8.5 40 29-68 31-71 (111)
9 3fhn_A Protein transport prote 47.0 53 0.0018 36.5 8.9 40 532-573 504-545 (706)
10 2odv_A Plectin 1, HD1; plakin 44.7 63 0.0022 30.7 8.1 83 28-113 123-211 (235)
11 3hr0_A COG4; conserved oligome 43.4 11 0.00038 36.7 2.6 79 495-574 20-112 (263)
12 3hnw_A Uncharacterized protein 41.1 1.5E+02 0.0052 25.5 9.2 45 8-52 57-101 (138)
13 1o3x_A ADP-ribosylation factor 37.8 2E+02 0.0067 24.9 9.4 53 17-70 12-66 (140)
14 3qfl_A MLA10; coiled-coil, (CC 37.5 84 0.0029 26.1 6.8 23 76-98 56-78 (115)
15 3ls0_A SLL1638 protein, PSBQ; 36.3 1.8E+02 0.0061 24.9 8.6 32 23-54 17-48 (133)
16 1gqe_A Release factor 2, RF2; 36.0 3.6E+02 0.012 27.3 12.6 63 73-136 26-88 (365)
17 1ceu_A Protein (HIV-1 regulato 33.4 17 0.00058 25.7 1.4 21 310-330 18-38 (51)
18 2d2s_A Exocyst complex compone 32.2 3.2E+02 0.011 25.6 15.2 86 299-385 133-220 (235)
19 3etv_A Protein transport prote 31.6 4E+02 0.014 26.6 13.8 33 22-54 5-37 (355)
20 1yku_A Hypothetical protein PX 29.1 2.4E+02 0.0081 24.2 8.1 75 16-90 48-122 (136)
21 3tul_A Cell invasion protein S 27.6 3E+02 0.01 23.8 10.8 66 30-95 21-92 (158)
22 3edu_A Beta-I spectrin, spectr 25.9 3.7E+02 0.013 24.3 13.2 109 73-189 9-127 (218)
23 3edv_A Spectrin beta chain, br 25.6 4.5E+02 0.016 25.2 13.9 119 63-189 4-132 (323)
24 2d1l_A Metastasis suppressor p 25.2 2.3E+02 0.0077 27.2 8.3 86 325-422 28-126 (253)
25 3lay_A Zinc resistance-associa 25.2 2E+02 0.0067 25.9 7.5 28 25-52 70-97 (175)
26 3o0z_A RHO-associated protein 24.6 3.7E+02 0.013 23.9 13.3 27 37-64 59-85 (168)
27 3ghg_A Fibrinogen alpha chain; 24.0 6.6E+02 0.023 26.6 12.9 100 33-152 50-151 (562)
28 3ghg_B Fibrinogen beta chain; 23.9 6.3E+02 0.022 26.3 13.1 7 92-98 136-142 (461)
29 3pmd_A Conserved domain protei 23.8 2.9E+02 0.0098 24.1 7.7 87 15-101 50-137 (153)
30 4aj5_A SKA1, spindle and kinet 23.5 2.8E+02 0.0094 22.0 9.2 64 30-93 16-79 (91)
31 3zsu_A TLL2057 protein, cyanoq 22.1 3.7E+02 0.013 22.9 8.5 30 24-54 16-45 (130)
32 1naf_A ADP-ribosylation factor 21.0 4.3E+02 0.015 23.3 14.2 53 17-70 21-75 (158)
33 3kbt_A Beta-I spectrin, spectr 21.0 5.5E+02 0.019 24.6 21.9 112 71-190 116-237 (326)
34 3oja_A Leucine-rich immune mol 20.4 7.2E+02 0.025 25.6 13.6 33 20-52 346-379 (487)
35 4fm3_A Uncharacterized hypothe 20.2 2.8E+02 0.0096 22.4 6.6 45 35-83 52-96 (98)
No 1
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=300.78 Aligned_cols=205 Identities=18% Similarity=0.331 Sum_probs=189.7
Q ss_pred ccCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHhh------hcCCCCCCCCCccccCchhHHHHHHHHHHHHHHhhhhhH
Q 007292 388 QVCSESGAMDPLMNSYVERMQATTKKWYLNILDAD------KVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDI 461 (609)
Q Consensus 388 ~~ll~~~~~~~L~~~Yl~~~~~~~~ew~~~~l~~e------r~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~~~~~ 461 (609)
+|+|+++.++.|+++|+++++++|++|+.|+++.| |+.+|+.|.+|+|+|++|+|+|+||++|+++|..++.+.
T Consensus 1 ~~ll~~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~ 80 (399)
T 2fji_1 1 GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAK 80 (399)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHHHHHHHHHHHHHhCCCcc
Confidence 57888899999999999999999999999999999 778999999999999999999999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------CCCCCchhHHHHHhhhhhhhHHHHHHHHHHh
Q 007292 462 MLYRIALAIIQVMIDFQAAERERLAE-----------------------PAPEIGLEPLCAMINNNLRCYDLAMELSTST 518 (609)
Q Consensus 462 ~~~~v~~~~~~~l~~f~~~y~~~l~~-----------------------~~~~~~~e~liA~~N~~~~~~e~~~~l~~~~ 518 (609)
...+|+..|+..|..|+..|++.+.+ ..++++++|+||++|||.+|.++++++..++
T Consensus 81 l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~liA~~Nn~~~~~e~~~~l~~~~ 160 (399)
T 2fji_1 81 ILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKY 160 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCccccccccHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 77699999999999999999876511 1235678999999999999999999999999
Q ss_pred cccCCccccccc--chhHHhhhHHHHHHHHHHHHHHHHhcCccchHHhhhhcCCCce-------eeeecccccccccccc
Q 007292 519 MEALPPNYAEQV--NFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKGKS-------LLKSFTSFLFLDCKYY 589 (609)
Q Consensus 519 ~~~v~~~~~~~i--~~~~~~~~f~~l~~~a~~~L~~~i~~d~~l~p~~~~lft~~W~-------i~~Ti~dY~~~D~~~~ 589 (609)
.+.+++.+.+++ +++.+.++|.+++++|++.|++.||.| |+|+|++|||++|| |+.|++|| +.||+.+
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~d--l~p~~~~lft~~W~~~~~v~~i~~ti~dy-~~d~~~~ 237 (399)
T 2fji_1 161 GKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDD--LRKPYQEIFSKTWYMGSQAQQIADTLDEY-LLDIKPQ 237 (399)
T ss_dssp HTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT--THHHHTTTTSGGGTTCCHHHHHHHHHHHH-HHHHGGG
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCchhcCCcHHHHHHHHHHHH-HHHHHHH
Confidence 999999998766 688999999999999999999999999 99999999999995 99999999 9999999
Q ss_pred cccccc
Q 007292 590 KSNPYI 595 (609)
Q Consensus 590 ~~~~~~ 595 (609)
|+|+++
T Consensus 238 L~~~~~ 243 (399)
T 2fji_1 238 MNSVLF 243 (399)
T ss_dssp SCHHHH
T ss_pred hChHHH
Confidence 999774
No 2
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=97.64 E-value=0.0012 Score=67.79 Aligned_cols=125 Identities=11% Similarity=0.212 Sum_probs=89.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccccCchhHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHH
Q 007292 394 GAMDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVREN--STDIMLYRIALAII 471 (609)
Q Consensus 394 ~~~~~L~~~Yl~~~~~~~~ew~~~~l~~er~~~Pe~d~dG~~~t~~~vdlfqmi~qql~~a~~~--~~~~~~~~v~~~~~ 471 (609)
+-+.+....|+.....+..+|+.++++.|+-.+-+...++..+|++.+|+|.+++|.++.-..+ ......+.+...++
T Consensus 9 ~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~l~ 88 (341)
T 3swh_A 9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFA 88 (341)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999998875433433567789999999999999999887543 23323334444455
Q ss_pred HHHHHHHHHHHHHhc----CCCCCCchhHHHHHhhhhhhhHHHHHHHHHHh
Q 007292 472 QVMIDFQAAERERLA----EPAPEIGLEPLCAMINNNLRCYDLAMELSTST 518 (609)
Q Consensus 472 ~~l~~f~~~y~~~l~----~~~~~~~~e~liA~~N~~~~~~e~~~~l~~~~ 518 (609)
+.+.+..-.|.+.+. ..........+|.++||..+.+...+.+.+.+
T Consensus 89 ~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l 139 (341)
T 3swh_A 89 KTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAM 139 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHHHHHHHhc
Confidence 555555555655542 22222224669999999999999888877664
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.09 E-value=2.3e+02 Score=37.43 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=48.3
Q ss_pred CCCc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHch
Q 007292 24 LPDQ-LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQE----CQTLIENH 98 (609)
Q Consensus 24 ~p~~-L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~----~~~~v~~~ 98 (609)
+|.+ |+=|..++.=+.+|+..++.+ .+-.+.|+..|.+|...|.+++.++...+....+ ++.+++.+
T Consensus 1893 TP~syLeli~~y~~ll~~K~~el~~~--------~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1893 TPRHYLDFINQVVLLINEKRDQLEEE--------QLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3544 567888888888887777544 4555779999999999999999999887654443 44444444
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.68 E-value=1.1e+02 Score=29.28 Aligned_cols=11 Identities=9% Similarity=-0.194 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 007292 182 IWETFEKTLWG 192 (609)
Q Consensus 182 l~~~f~~~l~~ 192 (609)
....+++.+-.
T Consensus 151 ~~~e~~~e~~~ 161 (256)
T 3na7_A 151 EVKNIKETQQI 161 (256)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 5
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=58.11 E-value=63 Score=25.03 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=34.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 42 QQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIE 85 (609)
Q Consensus 42 k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~ 85 (609)
.++|+.+|+..++..+...+.-+..|..++++++.=+.++.+|-
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi 48 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 46788899999999999999889888888888876666654433
No 6
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=54.03 E-value=1.1e+02 Score=27.40 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
++-.++.++..--+.||.+|+..
T Consensus 12 ~~~~l~~~v~~a~s~Id~qL~RR 34 (171)
T 2etd_A 12 HLVSLEQEVQEXYSQIQNQLQRR 34 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777654
No 7
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=51.62 E-value=1.4e+02 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=15.2
Q ss_pred HHHhhcC--CCCchhhHHHHHHHHHHH
Q 007292 17 EVAKLLT--LPDQLQFIGDMKADYIAR 41 (609)
Q Consensus 17 ~v~~ll~--~p~~L~kl~~l~~~~~~~ 41 (609)
++.+|++ +|+||..-..+......+
T Consensus 37 ~L~eLirs~~PeDL~~AN~LiK~m~~~ 63 (186)
T 1oxz_A 37 MLARLLKSSHPEDLRAANKLIKEMVQE 63 (186)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHhcc
Confidence 5677777 577776555555444443
No 8
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=50.56 E-value=77 Score=26.33 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 007292 29 QFIGDMKADYIARQQANDSQLSTM-VAEQIEQAQTGLESLA 68 (609)
Q Consensus 29 ~kl~~l~~~~~~~k~s~~~qLk~~-v~~ql~~~~~gl~~L~ 68 (609)
++++.+...+..++.+|+.+|... +...++.+..++..|+
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lq 71 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQ 71 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Confidence 589999999999999999999755 3444554444444433
No 9
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=47.03 E-value=53 Score=36.54 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=35.2
Q ss_pred hhHHhhhHHHHHHH-HHHHHHHHHhcCccchHHhhhhcC-CCce
Q 007292 532 FEDACKGFLEVTKE-AVRHTLNVIFEDPGVEQLLVKLYQ-KGKS 573 (609)
Q Consensus 532 ~~~~~~~f~~l~~~-a~~~L~~~i~~d~~l~p~~~~lft-~~W~ 573 (609)
|+++...|..+.+. +...++..++.. ++..++.-++ +.|.
T Consensus 504 FDetIs~Y~~L~~~~~~~~Iv~~v~~e--ik~~lK~Y~k~s~W~ 545 (706)
T 3fhn_A 504 FQNVENDYEKAMSTDMQNSIVHRIQKL--LKETLRNYFKISTWS 545 (706)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHH--HHHHTHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcccCc
Confidence 88999999999999 999999999988 8888888887 6895
No 10
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=44.74 E-value=63 Score=30.72 Aligned_cols=83 Identities=11% Similarity=0.044 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHH
Q 007292 28 LQFIGDMKADYIARQQANDSQLSTMVAEQIEQ------AQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQI 101 (609)
Q Consensus 28 L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~------~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~I 101 (609)
|+++..+.+++.++-...+..|... ...|.. +..++........++..+.+.+..+...|++... .+|.++
T Consensus 123 lerLe~La~kf~rka~~~e~~L~~~-~~~L~~d~~~l~~~~a~k~~e~ie~dL~~~e~~i~~l~~~a~~L~~--~~y~~a 199 (235)
T 2odv_A 123 LEALQRIVTKLQMEAGLAEEQLNQA-DALLQSDVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKD--GRHPQG 199 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcH
Confidence 6777778888888777777777644 222210 0111223445556666666666666666665544 256666
Q ss_pred HHHHHHHHHHHH
Q 007292 102 KLLSNARNNLST 113 (609)
Q Consensus 102 k~l~~~~~nl~~ 113 (609)
.++.....+|..
T Consensus 200 ~~i~~r~~~l~~ 211 (235)
T 2odv_A 200 EQMYRRVYRLHK 211 (235)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555554444433
No 11
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=43.44 E-value=11 Score=36.70 Aligned_cols=79 Identities=11% Similarity=0.238 Sum_probs=50.4
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHhcccCCccc-----cc----cc-----chhHHhhhHHHHHHHHHHHHHHHHhcCccc
Q 007292 495 EPLCAMINNNLRCYDLAMELSTSTMEALPPNY-----AE----QV-----NFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560 (609)
Q Consensus 495 e~liA~~N~~~~~~e~~~~l~~~~~~~v~~~~-----~~----~i-----~~~~~~~~f~~l~~~a~~~L~~~i~~d~~l 560 (609)
..-|..+||-..|.+|+..|...+.+.+...| .+ .+ ++....+-|.++.+.++..|...++. |-+
T Consensus 20 ~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ik-prL 98 (263)
T 3hr0_A 20 MSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIK-PQV 98 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHH
T ss_pred hhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHH
Confidence 34678899999999999887665543222211 11 11 23344456667788888888765554 228
Q ss_pred hHHhhhhcCCCcee
Q 007292 561 EQLLVKLYQKGKSL 574 (609)
Q Consensus 561 ~p~~~~lft~~W~i 574 (609)
+|.+..+++...++
T Consensus 99 r~~l~~f~~~~y~l 112 (263)
T 3hr0_A 99 QPWINSFFSVSHNI 112 (263)
T ss_dssp HHHHHGGGGSCBSC
T ss_pred HHHHHHHhcccccC
Confidence 88888888776654
No 12
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.14 E-value=1.5e+02 Score=25.51 Aligned_cols=45 Identities=2% Similarity=-0.127 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHH
Q 007292 8 VEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 8 ~~a~~~a~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
.-|--+|++-..++|+.-...+.+.+-...+.++..++-.+|.+.
T Consensus 57 r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 57 LRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666555555555444444444444444444433
No 13
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=37.80 E-value=2e+02 Score=24.90 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=15.0
Q ss_pred HHHhhcC--CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 17 EVAKLLT--LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALS 70 (609)
Q Consensus 17 ~v~~ll~--~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a 70 (609)
++.++++ +|+||..-..+......+...--.+++.. .+.++.++..+..|.+-
T Consensus 12 ~L~~Lirs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~-~~eLe~v~~n~~LL~EM 66 (140)
T 1o3x_A 12 MLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKR-VNAIEEVNNNVKLLTEM 66 (140)
T ss_dssp ---------------CCCSSTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHccchhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6888888 69999753333333333222212222222 22455555555544443
No 14
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=37.47 E-value=84 Score=26.06 Aligned_cols=23 Identities=4% Similarity=-0.021 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHch
Q 007292 76 QLRENFISIERYCQECQTLIENH 98 (609)
Q Consensus 76 ~l~~~~~~i~~~~~~~~~~v~~~ 98 (609)
.++.-+.+++.++-+.+..+++|
T Consensus 56 ~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 56 QDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777
No 15
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=36.30 E-value=1.8e+02 Score=24.95 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=21.3
Q ss_pred CCCCchhhHHHHHHHHHHHHhhHHHHHHHHHH
Q 007292 23 TLPDQLQFIGDMKADYIARQQANDSQLSTMVA 54 (609)
Q Consensus 23 ~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~ 54 (609)
-+|++|++|..+...++.=+..++.+|...|+
T Consensus 17 ysp~~i~~Iq~y~~~i~~ar~Rl~e~L~~lI~ 48 (133)
T 3ls0_A 17 YSPEKIAQLQVYVNPIAVARDGMEKRLQGLIA 48 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 36777888877777777666666444665554
No 16
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=35.98 E-value=3.6e+02 Score=27.28 Aligned_cols=63 Identities=8% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHhhhc
Q 007292 73 MISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLG 136 (609)
Q Consensus 73 ~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~~~~~~~~~~~l~ 136 (609)
++..+.+++.++.....+. +...+-...+++..-+..|...++.++.+....+.++.+.+++.
T Consensus 26 ~l~~~~~r~~el~~~~~~p-~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~ 88 (365)
T 1gqe_A 26 DYDAKKERLEEVNAELEQP-DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAV 88 (365)
T ss_dssp THHHHHHHHHHHHHHHHSG-GGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666776766665543 45566677778888888888888888887776666655555553
No 17
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=33.37 E-value=17 Score=25.65 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhccccccccc
Q 007292 310 TIGEELADIYDYVAPCFPPRY 330 (609)
Q Consensus 310 ~~~~dL~~v~~~~~~~FPp~~ 330 (609)
|+.+-|..++...+..||+.|
T Consensus 18 W~le~LeElk~EAvrHFpr~~ 38 (51)
T 1ceu_A 18 WTLELLEELKNEAVRHFPRIW 38 (51)
T ss_dssp HHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHH
Confidence 778888889999999999976
No 18
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.25 E-value=3.2e+02 Score=25.64 Aligned_cols=86 Identities=10% Similarity=0.091 Sum_probs=53.8
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHhccccccc-cccHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHh
Q 007292 299 EDLKAALEEA-RTIGEELADIYDYVAPCFPP-RYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDN 376 (609)
Q Consensus 299 ~d~~~~Ld~~-~~~~~dL~~v~~~~~~~FPp-~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~ 376 (609)
.|+..++.++ .-++..+..+......|||+ .=..+..++.|-...+..+...+...-.. +.+-.-.+++-+..+-..
T Consensus 133 gd~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~~S~lV~Wa~~eve~f~~l~~rqv~~-~~~l~~ecv~i~~~~~~~ 211 (235)
T 2d2s_A 133 DNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQLLN-DEMLSPGSIKSSRKQIDG 211 (235)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence 3555566664 37788888888888889998 44667777777777766665554310001 222222666666677777
Q ss_pred HhcCCCCcc
Q 007292 377 LIGLGVDES 385 (609)
Q Consensus 377 l~~l~~~~~ 385 (609)
|++.|++..
T Consensus 212 L~~vGLd~~ 220 (235)
T 2d2s_A 212 LKAVGLDFV 220 (235)
T ss_dssp GGGGTCCCH
T ss_pred HHHcCCChH
Confidence 887887753
No 19
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=31.62 E-value=4e+02 Score=26.58 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=20.5
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHH
Q 007292 22 LTLPDQLQFIGDMKADYIARQQANDSQLSTMVA 54 (609)
Q Consensus 22 l~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~ 54 (609)
+.+-+||=.|++....+.+++..+-.+|.++-+
T Consensus 5 l~~i~DLl~id~~I~~i~~eRd~La~~lq~~~~ 37 (355)
T 3etv_A 5 MNGIDDLLNINDRIKQVQNERNELASKLQNLKQ 37 (355)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888989999999999999988777776643
No 20
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=29.06 E-value=2.4e+02 Score=24.17 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=61.2
Q ss_pred HHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 16 REVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQE 90 (609)
Q Consensus 16 ~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~ 90 (609)
.-+-+.++.+.|++-|.++-.++.+++...+..+-..|..--.|-+.-++.|..+--..++++--+.+|...-..
T Consensus 48 ~lvi~~~~~~~s~~~ie~la~KiA~ER~eA~~NIgeFVYN~N~GR~~i~~~l~~~~~~~~eL~~~i~kIN~~FD~ 122 (136)
T 1yku_A 48 SAFIMYLKEEISLQEIEITSKKIARERIDAKVNIAEFIHNTNVAKIEIMNILTLLNPDLQQYQALVKKINQFFDH 122 (136)
T ss_dssp HHHHHHHTTSSCGGGGHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHhhccccHHHHHHHcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 446778999999999999999999999999999999999888888878877777766677777766666654443
No 21
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=27.56 E-value=3e+02 Score=23.82 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 007292 30 FIGDMKADYIARQQANDSQ------LSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLI 95 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~q------Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v 95 (609)
.|.++++|+..-++-+++| |+..-++-+++++.+...++.+.+++...+..+....++....+.-+
T Consensus 21 Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 21 SLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 4677777777666555553 44444666677776666666666666655555555555544444433
No 22
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=25.90 E-value=3.7e+02 Score=24.30 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHH--hhhhchhHHHHHHHhhhcCC--------hhHH
Q 007292 73 MISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDV--EGMMSISVEAAEAKDSLGDD--------KELI 142 (609)
Q Consensus 73 ~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l--~~l~~~~~~~~~~~~~l~~~--------~~LL 142 (609)
++.++..-+.+-..... +...-.++..+..+-..|..|..-+..+ .++..+.....++...-..+ ..|-
T Consensus 9 ~~~~l~~Wl~~ke~~l~-~~~~g~dl~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l~ 87 (218)
T 3edu_A 9 ETDDLEQWISEKELVAS-SPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLN 87 (218)
T ss_dssp HHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-ccccCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 33344444444333332 2222346667777777777777666542 34545444433333321111 1244
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Q 007292 143 NTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKT 189 (609)
Q Consensus 143 ~ah~~L~~Le~~rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f~~~ 189 (609)
..+..|..+-..|...|..+ ..+..|+..++.+..++...
T Consensus 88 ~~W~~L~~~~~~R~~~L~~a-------~~~~~F~~~~~e~~~Wl~ek 127 (218)
T 3edu_A 88 EMWADLLELIDTRMQLLAAS-------YDLHRYFYTGAEILGLIDEK 127 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544433 35677888888888877654
No 23
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=25.63 E-value=4.5e+02 Score=25.22 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHH--hhhhchhHHHHHHHhhhcCC--
Q 007292 63 GLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDV--EGMMSISVEAAEAKDSLGDD-- 138 (609)
Q Consensus 63 gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l--~~l~~~~~~~~~~~~~l~~~-- 138 (609)
|.-.|..=..++.++..-+........ +...-.+++.++.+-..|..|..-+..+ .++..+....+++...-..+
T Consensus 4 ~~~~l~~f~~~~~~l~~Wl~~~e~~l~-~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~ 82 (323)
T 3edv_A 4 MRHRLFQLNREVDDLEQWIAEREVVAG-SHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAA 82 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCChH
Q ss_pred ------hhHHHHHHHHHHHHhHHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Q 007292 139 ------KELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKT 189 (609)
Q Consensus 139 ------~~LL~ah~~L~~Le~~rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f~~~ 189 (609)
..|-..+..|..+-..|...|..+ ..+..|+..++.+..++...
T Consensus 83 ~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a-------~~~~~f~~~~~e~~~Wl~~k 132 (323)
T 3edv_A 83 TIAEWKDGLNEAWADLLELIDTRTQILAAS-------YELHKFYHDAKEIFGRIQDK 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
No 24
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=25.24 E-value=2.3e+02 Score=27.17 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=53.9
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHH----------hhh-cCCCC-hhhHHHHhchhHHhHHhHh-cCCCCccccccCC
Q 007292 325 CFPPRYEIFQLMVNLYTERFIQMLRLL----------SDR-ANELT-NIEILKVTGWVVEYQDNLI-GLGVDESLAQVCS 391 (609)
Q Consensus 325 ~FPp~~~I~~~~~~~yh~~l~~~L~~l----------~~~-~~~l~-~~~ll~lL~wv~~Y~~~l~-~l~~~~~~l~~ll 391 (609)
-|+|-|.=|-.-..-||.+++...... .+. ....+ ..+|-.+|.-+-...+.+. ++.
T Consensus 28 ~~~P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l~---------- 97 (253)
T 2d1l_A 28 GSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKLR---------- 97 (253)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 388999888888888999887554432 211 12232 4667777766666555443 221
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007292 392 ESGAMDPLMNSYVERMQATTKKWYLNILDAD 422 (609)
Q Consensus 392 ~~~~~~~L~~~Yl~~~~~~~~ew~~~~l~~e 422 (609)
.....+.+.++.-++.+++.|...+-..+
T Consensus 98 --~~~k~~~~eli~pLe~k~e~d~k~~~~~~ 126 (253)
T 2d1l_A 98 --QFSSALIDCLINPLQEQMEEWKKVANQLD 126 (253)
T ss_dssp --HHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 23456777777777888888887765433
No 25
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.22 E-value=2e+02 Score=25.92 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=17.9
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHH
Q 007292 25 PDQLQFIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 25 p~~L~kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
|++-.++..+++++..+...+..++.+.
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~ak 97 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISK 97 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777766665554433
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=24.58 E-value=3.7e+02 Score=23.89 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=12.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 007292 37 DYIARQQANDSQLSTMVAEQIEQAQTGL 64 (609)
Q Consensus 37 ~~~~~k~s~~~qLk~~v~~ql~~~~~gl 64 (609)
.+...+.+++.++... |++|+.-+.+.
T Consensus 59 ~L~~~k~~Leke~~~L-Qa~L~qEr~~r 85 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQL-QAILEAERRDR 85 (168)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3344444444444433 55554444333
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.00 E-value=6.6e+02 Score=26.56 Aligned_cols=100 Identities=8% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHch--HHHHHHHHHHHH
Q 007292 33 DMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH--DQIKLLSNARNN 110 (609)
Q Consensus 33 ~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~--~~Ik~l~~~~~n 110 (609)
.|+--+.++-..+...|+.. +.+++..+..- .++..-++.+.+.+..-.....++.+.+..| +.=+++..++..
T Consensus 50 rLQglLdkqErDltkrINEL-KnqLEdlsKns---Kdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKL-KNSLFEYQKNN---KDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHTHHHHHH---HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHH-HHHHHHHHhhc---hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhchhHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 007292 111 LSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALD 152 (609)
Q Consensus 111 l~~t~~~l~~l~~~~~~~~~~~~~l~~~~~LL~ah~~L~~Le 152 (609)
+..-++++..|+. +|-..+..+..||
T Consensus 126 VdnQlsnIrvLQs----------------nLedq~~kIQRLE 151 (562)
T 3ghg_A 126 VIEKVQHIQLLQK----------------NVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHH
No 28
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=23.93 E-value=6.3e+02 Score=26.29 Aligned_cols=7 Identities=0% Similarity=0.320 Sum_probs=2.7
Q ss_pred HHHHHch
Q 007292 92 QTLIENH 98 (609)
Q Consensus 92 ~~~v~~~ 98 (609)
+..++++
T Consensus 136 ~~~~~~s 142 (461)
T 3ghg_B 136 ENVVNEY 142 (461)
T ss_dssp HHTTSCH
T ss_pred hhHHHHH
Confidence 3333333
No 29
>3pmd_A Conserved domain protein; globin fold, non-heme globin, sporulation, bacillus anthraci sensor domain, chloride coordination; HET: 11A; 1.76A {Bacillus anthracis}
Probab=23.76 E-value=2.9e+02 Score=24.13 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=67.3
Q ss_pred HHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HH
Q 007292 15 VREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC-QT 93 (609)
Q Consensus 15 ~~~v~~ll~~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~-~~ 93 (609)
..-|-+.++.+.|++-|.++-.++.+++...+..+-..|..--.|-+.-++.|..+--.+++++--+.+|...-... --
T Consensus 50 ~~lvi~~~~~~~sl~~i~~LA~KIA~ER~~A~~NIGdFVYNvNlGR~~i~~~l~~~~~~~~eLq~iI~kIN~~FD~f~y~ 129 (153)
T 3pmd_A 50 LHVFTMYMREEINLQDIEDISKKIAQERMDAKVNIADFIYNTNEGKKEILNTLFLLNPTGQECKVVIEQINLFFDHLIYS 129 (153)
T ss_dssp HHHHHHHHTTSSCGGGGHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhccccHHHHHHHcchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44577799999999999999999999999999999999988888888788777777777777777777776555543 23
Q ss_pred HHHchHHH
Q 007292 94 LIENHDQI 101 (609)
Q Consensus 94 ~v~~~~~I 101 (609)
.|..|-++
T Consensus 130 aV~~Ytel 137 (153)
T 3pmd_A 130 TIYSYYKL 137 (153)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 30
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.54 E-value=2.8e+02 Score=21.98 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007292 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQT 93 (609)
Q Consensus 30 kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~ 93 (609)
||+.+++-+.-+.-.-+-.+|+.+..=.+.+-.-=+.|..--..|+.=++.....+++|...+.
T Consensus 16 KIs~ikk~L~Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 16 KIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665555555555555665554444444322223444444444444445555555555553
No 31
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=22.14 E-value=3.7e+02 Score=22.89 Aligned_cols=30 Identities=23% Similarity=0.114 Sum_probs=20.7
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHHHHHH
Q 007292 24 LPDQLQFIGDMKADYIARQQANDSQLSTMVA 54 (609)
Q Consensus 24 ~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~ 54 (609)
+|++|++|..+..++..=+..+ .+|...|+
T Consensus 16 sp~~i~~iq~y~~~i~~~r~Rl-~eL~~lI~ 45 (130)
T 3zsu_A 16 SELQITRIQDYLRDIEKNAERF-ADLEVSVA 45 (130)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 6778888888877777766666 44665554
No 32
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.04 E-value=4.3e+02 Score=23.25 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=30.8
Q ss_pred HHHhhcC--CCCchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 17 EVAKLLT--LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALS 70 (609)
Q Consensus 17 ~v~~ll~--~p~~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a 70 (609)
++.++++ +|+||..-..+......+...--.+++.. .+.|+.++..+..|.+-
T Consensus 21 ~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~-~seLe~V~~nv~LL~EM 75 (158)
T 1naf_A 21 MLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKR-VNAIEEVNNNVKLLTEM 75 (158)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6889998 69999877766666655443332333333 22455555555444433
No 33
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=21.01 E-value=5.5e+02 Score=24.56 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHH--hhhhchhHHHHHHHhhhcCC-h-------h
Q 007292 71 EQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDV--EGMMSISVEAAEAKDSLGDD-K-------E 140 (609)
Q Consensus 71 ~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l--~~l~~~~~~~~~~~~~l~~~-~-------~ 140 (609)
..++..+..-+.+....+.. .....++..+..+-..|..|...+..+ .++..+......+...-+.+ + .
T Consensus 116 ~~~~~~l~~Wl~~~e~~l~~-~~~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~ 194 (326)
T 3kbt_A 116 KRETDDLEQWISEKELVASS-PEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDG 194 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcc-ccCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44445555555554443332 223456777888888888887776653 35555554444333222221 1 2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHH
Q 007292 141 LINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTL 190 (609)
Q Consensus 141 LL~ah~~L~~Le~~rd~~l~~~~~~~~d~~~L~~~F~~v~~l~~~f~~~l 190 (609)
|-..+..|..+-.-|...|..+ ..+..|+..++.+..++....
T Consensus 195 l~~~W~~l~~~~~~r~~~L~~a-------~~~~~f~~~~~e~~~Wl~ek~ 237 (326)
T 3kbt_A 195 LNEMWADLLELIDTRMQLLAAS-------YDLHRYFYTGAEILGLIDEKH 237 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333322 245667777888877776553
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.38 E-value=7.2e+02 Score=25.61 Aligned_cols=33 Identities=18% Similarity=0.092 Sum_probs=19.1
Q ss_pred hhcCCCC-chhhHHHHHHHHHHHHhhHHHHHHHH
Q 007292 20 KLLTLPD-QLQFIGDMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 20 ~ll~~p~-~L~kl~~l~~~~~~~k~s~~~qLk~~ 52 (609)
+...+|. .+.+...-+..+.+++..++..+...
T Consensus 346 gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~ 379 (487)
T 3oja_A 346 EQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379 (487)
T ss_dssp HHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 44455665666777777766666554
No 35
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=20.21 E-value=2.8e+02 Score=22.37 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 35 KADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFIS 83 (609)
Q Consensus 35 ~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~ 83 (609)
..+..-+++.+|++|..+ ++...-.+ ..+...+..|+.|+++|.+
T Consensus 52 ~Ar~lAEqAe~DArLAeA-ka~~~Ka~---~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 52 KARLLAEQAELDARLAES-KVLTQKSK---DQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 345566778888888766 44333333 3344455666666666643
Done!