Query 007292
Match_columns 609
No_of_seqs 147 out of 389
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 22:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007292.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007292hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 54.0 49 0.0036 31.2 11.9 70 53-124 4-73 (362)
2 d1xzpa1 a.24.25.1 (A:118-211,A 31.6 1.1E+02 0.0079 25.0 9.4 7 1-7 1-7 (173)
3 d1vp7a_ a.7.13.1 (A:) Exonucle 28.6 43 0.0031 23.4 4.9 51 27-85 11-61 (68)
4 d2d2sa1 a.118.17.2 (A:525-753) 24.4 1.7E+02 0.012 25.0 9.7 106 274-385 105-214 (229)
5 d1sxje1 a.80.1.1 (E:256-354) R 15.8 1.9E+02 0.014 21.4 6.6 47 319-378 32-78 (99)
6 d2etda1 a.29.9.1 (A:35-183) Hy 14.7 2.6E+02 0.019 21.9 10.9 20 33-52 3-22 (149)
7 d1fpoa2 a.23.1.1 (A:77-171) HS 13.2 1.8E+02 0.013 21.1 6.0 29 25-53 32-60 (95)
8 d2etda1 a.29.9.1 (A:35-183) Hy 13.1 2.9E+02 0.021 21.6 11.5 22 105-126 108-130 (149)
9 d2gs4a1 a.25.1.4 (A:3-161) Hyp 12.8 3.2E+02 0.023 21.9 9.9 63 44-106 33-100 (159)
10 d1wrda1 a.7.8.1 (A:215-307) Ta 12.8 2.4E+02 0.017 20.3 6.8 9 141-149 70-78 (93)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=53.97 E-value=49 Score=31.23 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHchHHHHHHHHHHHHHHHHHHHHhhhhch
Q 007292 53 VAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSI 124 (609)
Q Consensus 53 v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~t~~~l~~l~~~ 124 (609)
++.++...+.-+..|... =++..+++++.++...+.+.. ...+-...++++.-+++|...++.++.+...
T Consensus 4 l~~~i~eL~~rl~~Lr~~-fDld~kk~Rl~ELE~~lsdP~-fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~ 73 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGY-LDYDAKKERLEEVNAELEQPD-VWNEPERAQALGKERSSLEAVVDTLDQMKQG 73 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHSGG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHhcCCh-hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666533 357788888888888877654 3366677777788888887777776665553
No 2
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=31.58 E-value=1.1e+02 Score=25.02 Aligned_cols=7 Identities=14% Similarity=-0.111 Sum_probs=4.2
Q ss_pred CCchHhh
Q 007292 1 MMSEDLG 7 (609)
Q Consensus 1 ~~~~~~~ 7 (609)
||+.++|
T Consensus 1 idL~qaE 7 (173)
T d1xzpa1 1 MDLTSAE 7 (173)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 5666655
No 3
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=28.62 E-value=43 Score=23.43 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=33.4
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007292 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIE 85 (609)
Q Consensus 27 ~L~kl~~l~~~~~~~k~s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~ 85 (609)
.+.+|+.+-+++...--+++.-|+. -+.|+..+..++..+++...++..+.
T Consensus 11 ~l~~LE~IV~~LE~g~l~Leesl~~--------ye~G~~L~~~C~~~L~~ae~ki~~l~ 61 (68)
T d1vp7a_ 11 ALAELESLVSAMENGTLPLEQSLSA--------YRRGVELARVCQDRLAQAEQQVKVLE 61 (68)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777788887777777665543 45566666666666666666664443
No 4
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.41 E-value=1.7e+02 Score=25.05 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHhccccccccccH-HHHHHHHHHHHHHHHHHHH
Q 007292 274 KDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEA-RTIGEELADIYDYVAPCFPPRYEI-FQLMVNLYTERFIQMLRLL 351 (609)
Q Consensus 274 k~~~~~~i~~sv~~~~~~~~~~~~~~d~~~~Ld~~-~~~~~dL~~v~~~~~~~FPp~~~I-~~~~~~~yh~~l~~~L~~l 351 (609)
++.|+..-...++..+..... .+++..++.++ .-++..+..+-.....|||++=+. ...++.|-+..+..++..+
T Consensus 105 ~~lfL~~rs~~l~~~i~~~~~---~~~~~~Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~~sS~lv~Wa~~ei~~f~~~l 181 (229)
T d2d2sa1 105 LDLFLQNRSNFIQDLILQIGS---VDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLI 181 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCC-----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 455555544445444433211 13555566664 367778888888889999987554 3667788888888777666
Q ss_pred hhh--cCCCChhhHHHHhchhHHhHHhHhcCCCCcc
Q 007292 352 SDR--ANELTNIEILKVTGWVVEYQDNLIGLGVDES 385 (609)
Q Consensus 352 ~~~--~~~l~~~~ll~lL~wv~~Y~~~l~~l~~~~~ 385 (609)
-.. +.... .-..++-+..|-..|.+.|++..
T Consensus 182 ~r~l~~~~~~---~~~~i~~~~~~c~~L~~vGlDf~ 214 (229)
T d2d2sa1 182 DKQLLNDEML---SPGSIKSSRKQIDGLKAVGLDFV 214 (229)
T ss_dssp HHHTTC---C---CHHHHHHHHHHHHGGGGGTCCCH
T ss_pred HHHcccchhH---HHHHHHHHHHHHHHHHHcCccHH
Confidence 420 11111 22344555556667778887753
No 5
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.79 E-value=1.9e+02 Score=21.44 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=30.5
Q ss_pred HHhccccccccccHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHhchhHHhHHhHh
Q 007292 319 YDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLI 378 (609)
Q Consensus 319 ~~~~~~~FPp~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~lL~wv~~Y~~~l~ 378 (609)
.+.+..|.||+ .-+...+.+++. ....+..--..+++|...|+.-|.
T Consensus 32 YeLL~~cIpp~------------~Ilk~L~~~Ll~-~~~~d~~lk~eii~~aa~yE~Rl~ 78 (99)
T d1sxje1 32 YDLLAHCIPAN------------IILKELTFSLLD-VETLNTTNKSSIIEYSSVFDERLS 78 (99)
T ss_dssp HHHHTTTCCHH------------HHHHHHHHTTTT-CTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHH------------HHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHHHHHH
Confidence 45578999996 122333344432 245677777789999988987664
No 6
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=14.74 E-value=2.6e+02 Score=21.90 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 007292 33 DMKADYIARQQANDSQLSTM 52 (609)
Q Consensus 33 ~l~~~~~~~k~s~~~qLk~~ 52 (609)
.+++++...-+.||.+|+..
T Consensus 3 ~l~~~v~~a~s~Idv~L~rR 22 (149)
T d2etda1 3 SLEQEVQEKYSQIQNQLQRR 22 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777654
No 7
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]}
Probab=13.21 E-value=1.8e+02 Score=21.06 Aligned_cols=29 Identities=0% Similarity=-0.087 Sum_probs=19.8
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHHHHH
Q 007292 25 PDQLQFIGDMKADYIARQQANDSQLSTMV 53 (609)
Q Consensus 25 p~~L~kl~~l~~~~~~~k~s~~~qLk~~v 53 (609)
..|.+.+..+..++..++..+...|+...
T Consensus 32 ~~d~~~l~~l~~ei~~~~~~~~~~l~~~~ 60 (95)
T d1fpoa2 32 AKDEARLESFIKRVKKMFDTRHQLMVEQL 60 (95)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777766655
No 8
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=13.11 E-value=2.9e+02 Score=21.59 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHh-hhhchhH
Q 007292 105 SNARNNLSTTLKDVE-GMMSISV 126 (609)
Q Consensus 105 ~~~~~nl~~t~~~l~-~l~~~~~ 126 (609)
..+++.+..+.+..+ .+.++|.
T Consensus 108 a~aR~~YN~~V~~yN~~i~~FP~ 130 (149)
T d2etda1 108 AVARRDYNEAVKKYNTAIKKFPG 130 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhccH
Confidence 445555555555555 3444443
No 9
>d2gs4a1 a.25.1.4 (A:3-161) Hypothetical protein YciF {Escherichia coli [TaxId: 562]}
Probab=12.80 E-value=3.2e+02 Score=21.86 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHch--HHHHHHHH
Q 007292 44 ANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLREN---FISIERYCQECQTLIENH--DQIKLLSN 106 (609)
Q Consensus 44 s~~~qLk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~---~~~i~~~~~~~~~~v~~~--~~Ik~l~~ 106 (609)
+-..+|+.+++.++++++..++.|..+...+.+..-. -..+.++..+...++..+ +.+++...
T Consensus 33 a~~~eLk~~l~~H~~eT~~qi~rLe~i~~~~g~~~~~~~~c~am~Gli~e~~~~~~~~~~~~v~Da~l 100 (159)
T d2gs4a1 33 TSNEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAAL 100 (159)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCcHHHHHHHHHHHHHHhccCChHHHHHHH
Confidence 3356899999999999998888888777765432211 234677778888888877 55666654
No 10
>d1wrda1 a.7.8.1 (A:215-307) Target of Myb protein 1, TOM1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.80 E-value=2.4e+02 Score=20.35 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q 007292 141 LINTYERLT 149 (609)
Q Consensus 141 LL~ah~~L~ 149 (609)
+|+++..|.
T Consensus 70 lL~~ND~L~ 78 (93)
T d1wrda1 70 LLIVNDNLN 78 (93)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666665
Done!