Query 007293
Match_columns 609
No_of_seqs 266 out of 1959
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 22:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 4.5E-25 1.5E-29 212.0 10.9 161 22-202 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 3.6E-24 1.2E-28 202.8 13.4 154 24-201 2-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 3.7E-24 1.3E-28 202.1 11.1 155 23-200 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 4.8E-24 1.6E-28 204.1 10.6 159 23-198 1-174 (174)
5 2anr_A Neuro-oncological ventr 99.9 8.8E-24 3E-28 203.0 10.5 162 271-441 3-176 (178)
6 2jvz_A KH type-splicing, FAR u 99.9 6.5E-24 2.2E-28 200.9 9.3 154 25-200 2-160 (164)
7 3krm_A Insulin-like growth fac 99.9 3.7E-23 1.3E-27 195.8 13.9 154 274-441 3-157 (163)
8 2jzx_A Poly(RC)-binding protei 99.9 2E-23 7E-28 196.9 11.4 156 272-440 3-159 (160)
9 1j4w_A FUSE binding protein; s 99.9 6.2E-23 2.1E-27 196.4 11.8 158 273-438 2-174 (174)
10 2jvz_A KH type-splicing, FAR u 99.9 1.6E-22 5.5E-27 191.3 12.8 156 274-441 2-161 (164)
11 3n89_A Defective in GERM LINE 99.9 9.1E-22 3.1E-26 206.7 15.6 225 126-439 27-260 (376)
12 3n89_A Defective in GERM LINE 99.8 3.4E-19 1.2E-23 187.2 15.8 297 17-436 22-337 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 4.6E-17 1.6E-21 150.8 10.6 137 273-440 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 5.9E-17 2E-21 150.0 7.3 136 24-200 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.5 7E-15 2.4E-19 144.8 8.1 147 25-201 34-192 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.5 1.9E-14 6.7E-19 141.6 8.9 146 275-440 35-191 (219)
17 2axy_A Poly(RC)-binding protei 99.5 4.5E-14 1.5E-18 115.3 6.5 71 363-440 2-72 (73)
18 1zzk_A Heterogeneous nuclear r 99.5 1.3E-13 4.6E-18 115.1 8.6 73 364-441 5-77 (82)
19 1dtj_A RNA-binding neurooncolo 99.5 1.1E-13 3.6E-18 113.9 7.5 73 366-440 3-75 (76)
20 2p2r_A Poly(RC)-binding protei 99.5 7.6E-14 2.6E-18 114.9 6.5 72 364-440 3-74 (76)
21 1wvn_A Poly(RC)-binding protei 99.4 1.1E-13 3.9E-18 115.5 7.1 73 364-441 4-76 (82)
22 2axy_A Poly(RC)-binding protei 99.4 7.7E-14 2.6E-18 113.9 4.6 70 127-200 3-72 (73)
23 2dgr_A Ring finger and KH doma 99.4 1.9E-13 6.4E-18 114.3 5.8 70 363-440 7-76 (83)
24 1x4n_A FAR upstream element bi 99.4 5.2E-13 1.8E-17 114.0 8.3 74 363-441 12-85 (92)
25 1ec6_A RNA-binding protein NOV 99.4 2.9E-13 1E-17 114.3 6.5 75 366-442 3-77 (87)
26 1j5k_A Heterogeneous nuclear r 99.4 2.8E-13 9.6E-18 114.9 6.3 74 363-441 11-84 (89)
27 2hh2_A KH-type splicing regula 99.4 4.8E-13 1.7E-17 117.4 7.9 74 367-442 8-81 (107)
28 2p2r_A Poly(RC)-binding protei 99.4 2.2E-13 7.4E-18 112.1 4.7 71 128-200 4-74 (76)
29 1wvn_A Poly(RC)-binding protei 99.4 2.9E-13 1E-17 113.0 5.5 73 127-201 4-76 (82)
30 1zzk_A Heterogeneous nuclear r 99.4 4.3E-13 1.5E-17 112.0 6.5 72 127-200 5-76 (82)
31 1dtj_A RNA-binding neurooncolo 99.4 3.3E-13 1.1E-17 110.9 5.3 73 128-200 2-75 (76)
32 2opv_A KHSRP protein; KH domai 99.4 1.5E-12 5.1E-17 109.5 8.6 74 364-440 12-85 (85)
33 1x4m_A FAR upstream element bi 99.3 1.5E-12 5.2E-17 111.5 8.1 76 363-441 12-87 (94)
34 1j5k_A Heterogeneous nuclear r 99.3 6.5E-13 2.2E-17 112.7 4.9 74 126-201 11-84 (89)
35 2hh3_A KH-type splicing regula 99.3 1.5E-12 5E-17 114.0 7.1 72 366-442 11-82 (106)
36 1tua_A Hypothetical protein AP 99.3 1.2E-12 4.2E-17 125.8 7.2 145 26-200 5-160 (191)
37 1ec6_A RNA-binding protein NOV 99.3 8.1E-13 2.8E-17 111.6 4.4 74 128-201 2-76 (87)
38 1tua_A Hypothetical protein AP 99.3 2.3E-12 8E-17 123.8 7.9 145 276-440 6-160 (191)
39 2opv_A KHSRP protein; KH domai 99.3 2.3E-12 8E-17 108.3 6.6 75 126-200 11-85 (85)
40 2hh2_A KH-type splicing regula 99.3 1.6E-12 5.6E-17 114.0 5.5 72 130-201 8-80 (107)
41 1x4n_A FAR upstream element bi 99.3 1.6E-12 5.5E-17 110.9 5.3 74 126-201 12-85 (92)
42 1we8_A Tudor and KH domain con 99.3 4.2E-12 1.4E-16 110.8 7.9 77 363-442 12-88 (104)
43 2ctm_A Vigilin; K homology typ 99.3 4.3E-12 1.5E-16 108.8 7.8 75 363-443 14-88 (95)
44 1x4m_A FAR upstream element bi 99.3 1.7E-12 6E-17 111.2 4.5 77 125-201 11-87 (94)
45 2ctl_A Vigilin; K homology typ 99.3 9.3E-12 3.2E-16 107.2 8.7 73 364-440 15-87 (97)
46 1vig_A Vigilin; RNA-binding pr 99.3 5.5E-12 1.9E-16 102.3 6.5 68 364-438 3-70 (71)
47 2cte_A Vigilin; K homology typ 99.2 8.9E-12 3E-16 106.7 6.9 73 363-442 14-86 (94)
48 2dgr_A Ring finger and KH doma 99.2 3.2E-12 1.1E-16 106.7 4.0 70 126-200 7-76 (83)
49 2hh3_A KH-type splicing regula 99.2 5.5E-12 1.9E-16 110.3 4.5 71 129-201 11-81 (106)
50 1we8_A Tudor and KH domain con 99.2 8.7E-12 3E-16 108.8 5.3 75 127-201 13-87 (104)
51 2ctk_A Vigilin; K homology typ 99.1 4.2E-11 1.4E-15 104.4 6.8 71 364-441 15-85 (104)
52 1vig_A Vigilin; RNA-binding pr 99.1 3.6E-11 1.2E-15 97.4 4.3 67 128-198 4-70 (71)
53 2ctl_A Vigilin; K homology typ 99.1 6.5E-11 2.2E-15 101.9 5.9 72 128-200 16-87 (97)
54 2cte_A Vigilin; K homology typ 99.1 4.4E-11 1.5E-15 102.4 4.5 71 127-201 15-85 (94)
55 2ctm_A Vigilin; K homology typ 99.1 1E-10 3.5E-15 100.2 5.4 73 126-201 14-86 (95)
56 2ctj_A Vigilin; K homology typ 99.0 2.1E-10 7.3E-15 98.2 6.5 72 363-441 14-86 (95)
57 2ctf_A Vigilin; K homology typ 99.0 7.7E-10 2.6E-14 96.0 7.6 68 364-441 25-93 (102)
58 2ctk_A Vigilin; K homology typ 99.0 3.1E-10 1.1E-14 98.8 4.8 69 128-200 16-84 (104)
59 2ctj_A Vigilin; K homology typ 98.8 2.4E-09 8.3E-14 91.6 4.5 72 125-200 13-85 (95)
60 2ctf_A Vigilin; K homology typ 98.8 4.2E-09 1.4E-13 91.3 5.3 67 128-201 26-93 (102)
61 2cpq_A FragIle X mental retard 98.8 2.7E-09 9.3E-14 89.9 3.6 73 363-445 12-86 (91)
62 2cpq_A FragIle X mental retard 98.5 6.1E-08 2.1E-12 81.7 4.1 66 126-198 12-79 (91)
63 1k1g_A SF1-BO isoform; splicin 98.5 3.5E-07 1.2E-11 82.7 8.0 79 364-442 5-101 (131)
64 2yqr_A KIAA0907 protein; struc 98.3 1.9E-06 6.6E-11 76.4 9.2 77 364-440 10-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.3 6.4E-07 2.2E-11 81.0 5.5 73 128-200 6-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.2 1.4E-06 4.9E-11 77.2 5.7 73 128-200 11-99 (119)
67 2bl5_A MGC83862 protein, quaki 97.9 8.9E-06 3E-10 74.0 5.6 74 366-439 2-100 (140)
68 2bl5_A MGC83862 protein, quaki 97.8 7.7E-06 2.6E-10 74.4 3.4 72 129-200 2-101 (140)
69 3u1k_A Polyribonucleotide nucl 97.7 4.6E-05 1.6E-09 85.7 7.1 91 335-438 538-629 (630)
70 3u1k_A Polyribonucleotide nucl 97.6 4.3E-05 1.5E-09 85.9 4.9 92 99-198 537-629 (630)
71 3v69_A Protein filia; RNA-bind 97.5 0.00018 6.3E-09 64.2 7.6 67 367-439 57-123 (140)
72 2cxc_A NUSA; transcription ter 97.4 3.6E-05 1.2E-09 70.4 2.0 103 25-165 36-139 (144)
73 3v69_A Protein filia; RNA-bind 97.0 0.00065 2.2E-08 60.7 5.0 68 130-200 57-124 (140)
74 4aid_A Polyribonucleotide nucl 96.9 0.00061 2.1E-08 77.5 4.7 95 335-442 541-636 (726)
75 4aid_A Polyribonucleotide nucl 96.8 0.00063 2.1E-08 77.5 3.7 95 98-200 539-634 (726)
76 2cxc_A NUSA; transcription ter 96.7 0.00077 2.6E-08 61.6 3.1 103 274-403 36-140 (144)
77 2asb_A Transcription elongatio 95.5 0.0037 1.3E-07 62.0 1.5 96 34-167 126-222 (251)
78 1k0r_A NUSA; two component arr 95.3 0.0048 1.6E-07 64.5 1.7 96 34-167 249-345 (366)
79 2asb_A Transcription elongatio 93.9 0.057 2E-06 53.5 5.3 96 283-406 126-224 (251)
80 1hh2_P NUSA, N utilization sub 93.4 0.025 8.6E-07 58.8 1.9 94 34-166 245-340 (344)
81 1k0r_A NUSA; two component arr 93.1 0.083 2.9E-06 55.2 5.2 96 283-406 249-347 (366)
82 3cdi_A Polynucleotide phosphor 93.1 0.03 1E-06 64.0 2.0 93 99-199 530-623 (723)
83 1e3p_A Guanosine pentaphosphat 93.0 0.023 7.8E-07 65.2 0.8 91 99-198 569-660 (757)
84 1e3p_A Guanosine pentaphosphat 92.5 0.019 6.6E-07 65.8 -0.6 89 335-437 570-659 (757)
85 3cdi_A Polynucleotide phosphor 91.7 0.057 1.9E-06 61.7 2.0 66 364-440 558-624 (723)
86 1hh2_P NUSA, N utilization sub 89.6 0.068 2.3E-06 55.6 0.1 94 283-404 245-341 (344)
87 1wh9_A 40S ribosomal protein S 59.0 3.7 0.00013 34.2 1.7 28 27-54 37-64 (92)
88 2pt7_G HP1451, hypothetical pr 58.4 4.6 0.00016 36.8 2.3 30 27-56 35-64 (152)
89 2pt7_G HP1451, hypothetical pr 46.4 9 0.00031 34.9 2.2 68 367-443 34-101 (152)
90 2kl8_A OR15; structural genomi 37.7 43 0.0015 25.7 4.4 46 388-442 23-68 (85)
91 1wh9_A 40S ribosomal protein S 35.6 13 0.00044 30.8 1.3 27 367-393 36-62 (92)
92 3u5c_D RP13, YS3, 40S ribosoma 28.2 21 0.0007 34.9 1.6 29 27-55 46-74 (240)
93 3j20_C 30S ribosomal protein S 27.7 23 0.0008 33.9 1.9 28 27-54 42-69 (210)
94 2xzm_C KH domain containing pr 26.3 28 0.00095 34.1 2.1 29 26-54 48-76 (243)
95 2ba0_A Archeal exosome RNA bin 25.5 1E+02 0.0035 29.6 6.1 56 368-434 138-193 (229)
96 3iev_A GTP-binding protein ERA 25.4 29 0.001 34.7 2.3 31 365-395 239-270 (308)
97 3iz6_B 40S ribosomal protein S 25.0 21 0.00073 34.6 1.0 30 26-55 45-74 (227)
98 3gku_A Probable RNA-binding pr 23.2 27 0.00092 33.8 1.3 32 28-59 95-126 (225)
99 3r8n_C 30S ribosomal protein S 21.0 24 0.00081 33.7 0.5 28 27-54 63-90 (206)
100 4hhu_A OR280; engineered prote 20.9 1.1E+02 0.0038 26.3 4.5 46 388-442 105-150 (170)
101 2zkq_c 40S ribosomal protein S 20.5 25 0.00086 34.4 0.5 30 26-55 45-74 (243)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=4.5e-25 Score=212.01 Aligned_cols=161 Identities=20% Similarity=0.388 Sum_probs=126.4
Q ss_pred CCcEEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCC---CCCCCceEEEEccCcchhhhhhhccccccccCCCc
Q 007293 22 DDVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG---FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEV 98 (609)
Q Consensus 22 ~~~v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~---~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~ 98 (609)
++.++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+.+++.+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~--------------- 67 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA--------------- 67 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHH---------------
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHH---------------
Confidence 678999999999999999999999999999999999999753 46788999999998776432
Q ss_pred chHHHHHHHHHHHHhhhhhccC-----------CCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCC
Q 007293 99 SSTQEAVIRVFERMWEVEAEVE-----------GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (609)
Q Consensus 99 ~~A~~Al~~v~~~i~~~~~~~~-----------~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~ 167 (609)
|.. .+.+.+.+...... .........+++|+||.+++|+||||+|++|++|+++|||+|+|.+.
T Consensus 68 --A~~---~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~ 142 (178)
T 2anr_A 68 --VHG---FIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQK 142 (178)
T ss_dssp --HHH---HHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCC
T ss_pred --HHH---HHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCC
Confidence 322 22222222110000 00012235789999999999999999999999999999999999885
Q ss_pred CCCCCCCCceEEEeccHHHHHHHHHHHHHHHhccC
Q 007293 168 PACAAIDDQLIQITGATLAVKKALVAVTTCLQHLS 202 (609)
Q Consensus 168 p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~~ 202 (609)
+.++...++.|+|+|++++|.+|+.+|.++|++++
T Consensus 143 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 143 PDGINLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp C----CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 44556788999999999999999999999998854
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.91 E-value=3.6e-24 Score=202.76 Aligned_cols=154 Identities=20% Similarity=0.312 Sum_probs=126.3
Q ss_pred cEEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCC-CCCCCceEEEEccCcchhhhhhhccccccccCCCcchHH
Q 007293 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG-FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (609)
Q Consensus 24 ~v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~-~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~ 102 (609)
.-+++|+||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|+|+|+|+.++ +.
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~--------------------v~ 61 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA--------------------QF 61 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH--------------------HH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH--------------------HH
Confidence 3579999999999999999999999999999999999875 67889999999998766 33
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCC-ceEEEe
Q 007293 103 EAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDD-QLIQIT 181 (609)
Q Consensus 103 ~Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~d-R~V~I~ 181 (609)
.|...++..+.+.... .......++++|+||..++|+||||+|++|++|+++|||+|.|..+ ..+...+ +.|+|+
T Consensus 62 ~A~~~I~~~~~e~~~~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~~~~~~~v~I~ 137 (163)
T 3krm_A 62 KAQGRIYGKLKEENFF---GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPDENDQVIVKII 137 (163)
T ss_dssp HHHHHHHHHHHHTTSS---CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCCTTSEEEEEEE
T ss_pred HHHHHHHHHHhccccc---ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCCCCCceEEEEE
Confidence 4455555554443111 1123346788999999999999999999999999999999999875 2233344 589999
Q ss_pred ccHHHHHHHHHHHHHHHhcc
Q 007293 182 GATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 182 G~~e~V~~A~~~I~~~L~e~ 201 (609)
|++++|.+|+.+|.+++++.
T Consensus 138 G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 138 GHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp ECHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.90 E-value=3.7e-24 Score=202.06 Aligned_cols=155 Identities=18% Similarity=0.346 Sum_probs=126.0
Q ss_pred CcEEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHH
Q 007293 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (609)
Q Consensus 23 ~~v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~ 102 (609)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. ++.+|+|+|+|+.+++ .
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v--------------------~ 60 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAI--------------------F 60 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHH--------------------H
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHH--------------------H
Confidence 46899999999999999999999999999999999999875 5679999999986653 2
Q ss_pred HHHHHHHHHHhhhhhcc-C-CCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEE
Q 007293 103 EAVIRVFERMWEVEAEV-E-GDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQI 180 (609)
Q Consensus 103 ~Al~~v~~~i~~~~~~~-~-~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I 180 (609)
.|...+.+.+.+..... . +.......++++|+||.+++|+||||+|++|++|+++|||+|+|.++ ..+...++.|+|
T Consensus 61 ~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~~~~~~v~I 139 (160)
T 2jzx_A 61 KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPNSTERAITI 139 (160)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTTCCEEEEEE
T ss_pred HHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCCCCceEEEE
Confidence 33334443333321110 0 00112336899999999999999999999999999999999999874 456778999999
Q ss_pred eccHHHHHHHHHHHHHHHhc
Q 007293 181 TGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 181 ~G~~e~V~~A~~~I~~~L~e 200 (609)
+|++++|.+|+.+|.+++.+
T Consensus 140 ~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 140 AGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999876
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=4.8e-24 Score=204.12 Aligned_cols=159 Identities=21% Similarity=0.323 Sum_probs=123.7
Q ss_pred CcEEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHH
Q 007293 23 DVVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (609)
Q Consensus 23 ~~v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~ 102 (609)
+..+++|+||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|+|+|+|+.+++. .|.
T Consensus 1 g~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~-----------------~A~ 63 (174)
T 1j4w_A 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQ-----------------HAA 63 (174)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHH-----------------HHH
T ss_pred CCeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHH-----------------HHH
Confidence 457899999999999999999999999999999999998766678899999999977643 344
Q ss_pred HHHHHHHHHHhhhhhccC------------C--CCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCC-
Q 007293 103 EAVIRVFERMWEVEAEVE------------G--DGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP- 167 (609)
Q Consensus 103 ~Al~~v~~~i~~~~~~~~------------~--~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~- 167 (609)
.++..++........... . .......++++|+||.+++|+||||+|++|++|+++|||+|+|.+.
T Consensus 64 ~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~ 143 (174)
T 1j4w_A 64 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP 143 (174)
T ss_dssp HHHHHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC
T ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC
Confidence 444444333211000000 0 0001224689999999999999999999999999999999999886
Q ss_pred CCCCCCCCceEEEeccHHHHHHHHHHHHHHH
Q 007293 168 PACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (609)
Q Consensus 168 p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L 198 (609)
+.+....++.|+|+|++++|.+|+.+|.++|
T Consensus 144 ~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 144 PPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp TTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 3455678899999999999999999998874
No 5
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.89 E-value=8.8e-24 Score=202.96 Aligned_cols=162 Identities=21% Similarity=0.338 Sum_probs=128.3
Q ss_pred CcceEEEEEecccccccccccccchhhhhhhccCeeEEEecC---CCCCCccEEEEcccccccCCCChHHHHHHHHHhhh
Q 007293 271 KQEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP---LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARS 347 (609)
Q Consensus 271 ~~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~---~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i 347 (609)
..+++++|.||.+++|.||||+|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. ..+..|..++.+.+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~------~~v~~A~~~I~~~~ 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTI------EALNAVHGFIAEKI 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECH------HHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCH------HHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999853 356789999999984 34566766676666
Q ss_pred hhcccccC-------CCC--CCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEE
Q 007293 348 VEVEGQQG-------FSS--GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVI 418 (609)
Q Consensus 348 ~e~~~~~g-------~~~--g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V 418 (609)
.+...... +.+ ........+.+|+||.+++|+||||+|++||+|++.|||+|+|.+..+. ...+++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~---~~~~~~~v 153 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG---INLQNRVV 153 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC---CCCCceEE
Confidence 44311000 000 0112235789999999999999999999999999999999999875432 24578999
Q ss_pred EEcCCHHHHHHHHHHHHHHhhhc
Q 007293 419 QISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 419 ~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
+|+|++++|++|+.+|.++|++.
T Consensus 154 ~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 154 TVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSC
T ss_pred EEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 6
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.89 E-value=6.5e-24 Score=200.91 Aligned_cols=154 Identities=15% Similarity=0.220 Sum_probs=121.7
Q ss_pred EEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCC--CCCCCceEEEEccCcchhhhhhhccccccccCCCcchHH
Q 007293 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGG--FPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQ 102 (609)
Q Consensus 25 v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~--~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~ 102 (609)
++++|+||.+++|.||||+|++|++|+++|||+|+|.+. .++..+|+|+|+|+.+++ .
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v--------------------~ 61 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKV--------------------Q 61 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHH--------------------H
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHH--------------------H
Confidence 689999999999999999999999999999999999753 346779999999987663 2
Q ss_pred HHHHHHHHHHhhhhhcc---CCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEE
Q 007293 103 EAVIRVFERMWEVEAEV---EGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQ 179 (609)
Q Consensus 103 ~Al~~v~~~i~~~~~~~---~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~ 179 (609)
.|...+...+.+..... .++......++++|+||...+|+||||+|++|++|+++|||+|.|.+. .+...++.|+
T Consensus 62 ~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~--~~~~~~~~v~ 139 (164)
T 2jvz_A 62 QACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAH 139 (164)
T ss_dssp HHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC--CTTSSEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCC--CCCCCcEEEE
Confidence 33334444333321110 000011113568899999999999999999999999999999999874 3445689999
Q ss_pred EeccHHHHHHHHHHHHHHHhc
Q 007293 180 ITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 180 I~G~~e~V~~A~~~I~~~L~e 200 (609)
|+|++++|.+|+.+|.+++++
T Consensus 140 I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 140 IMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp EESCHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999976
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=195.78 Aligned_cols=154 Identities=21% Similarity=0.314 Sum_probs=128.4
Q ss_pred eEEEEEecccccccccccccchhhhhhhccCeeEEEecC-CCCCCccEEEEcccccccCCCChHHHHHHHHHhhhhhccc
Q 007293 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP-LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (609)
Q Consensus 274 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~-~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~~ 352 (609)
.+++|+||.+++|.|||++|++|++|+++|||+|+|.+. .+++.+|.|+|+|+. ..+..|..++.+.+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~------e~v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPP------EAQFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECH------HHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHhcccc
Confidence 478999999999999999999999999999999999975 567899999999974 4566777777777755421
Q ss_pred ccCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHH
Q 007293 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALS 432 (609)
Q Consensus 353 ~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~ 432 (609)
. +.......+.+|.||.+++|+|||++|++|++|++.|||+|+|++.. .|. ..+++.|+|+|++++|+.|+.
T Consensus 77 ~-----~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~-~~~--~~~~~~v~I~G~~~~v~~A~~ 148 (163)
T 3krm_A 77 F-----GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPD--ENDQVIVKIIGHFYASQMAQR 148 (163)
T ss_dssp S-----CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC-CCC--TTSEEEEEEEECHHHHHHHHH
T ss_pred c-----ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC-CCC--CCCceEEEEEeCHHHHHHHHH
Confidence 1 11223457889999999999999999999999999999999997643 232 344568999999999999999
Q ss_pred HHHHHhhhc
Q 007293 433 EVVGRLRHN 441 (609)
Q Consensus 433 ~I~~~Lr~~ 441 (609)
+|.++|++.
T Consensus 149 ~I~~~i~~~ 157 (163)
T 3krm_A 149 KIRDILAQV 157 (163)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 8
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=196.92 Aligned_cols=156 Identities=21% Similarity=0.399 Sum_probs=127.7
Q ss_pred cceEEEEEecccccccccccccchhhhhhhccCeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHHhhhhhcc
Q 007293 272 QEVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (609)
Q Consensus 272 ~~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~ 351 (609)
..++++|.||.+++|.|||++|++|++|+++|||+|+|.+. ++.+|.|+|+|+. ..+.+|..++.+.+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~------~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPT------NAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEH------HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCH------HHHHHHHHHHHHHHHhhc
Confidence 35689999999999999999999999999999999999965 4678999999984 455677777776665432
Q ss_pred cccCCCC-CCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHH
Q 007293 352 GQQGFSS-GENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNA 430 (609)
Q Consensus 352 ~~~g~~~-g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A 430 (609)
. ...+. ........+.+|.||.+++|+|||++|++|++|++.|||+|+|.+. ..| ..+++.|+|+|++++|++|
T Consensus 75 ~-~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~~~v~~A 149 (160)
T 2jzx_A 75 S-SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIPQSIIEC 149 (160)
T ss_dssp T-SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECHHHHHHH
T ss_pred c-ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCHHHHHHH
Confidence 1 11111 1112346899999999999999999999999999999999999763 333 4678999999999999999
Q ss_pred HHHHHHHhhh
Q 007293 431 LSEVVGRLRH 440 (609)
Q Consensus 431 ~~~I~~~Lr~ 440 (609)
+.+|.+.|.+
T Consensus 150 ~~~I~~~i~e 159 (160)
T 2jzx_A 150 VKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998876
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=6.2e-23 Score=196.38 Aligned_cols=158 Identities=19% Similarity=0.312 Sum_probs=123.8
Q ss_pred ceEEEEEecccccccccccccchhhhhhhccCeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHHhhhhhccc
Q 007293 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (609)
Q Consensus 273 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~~ 352 (609)
..+++|.||.+++|.||||+|++|++|+++|||+|+|.+..+++.+|.|+|+|+. ..+..|..+|.+.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPP------DRAQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECH------HHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCH------HHHHHHHHHHHHHHHhccc
Confidence 3578999999999999999999999999999999999876667789999999984 3455666666655543310
Q ss_pred cc-C--------CCCC------CCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcE
Q 007293 353 QQ-G--------FSSG------ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVV 417 (609)
Q Consensus 353 ~~-g--------~~~g------~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~ 417 (609)
.. + +..+ ......++.+|.||.+++|+||||+|++||+|++.|||+|+|.+.. +.+...+++.
T Consensus 76 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~ 153 (174)
T 1j4w_A 76 GNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKL 153 (174)
T ss_dssp ----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEE
T ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceE
Confidence 00 0 0000 0012346889999999999999999999999999999999998743 3334577899
Q ss_pred EEEcCCHHHHHHHHHHHHHHh
Q 007293 418 IQISGEYKNVQNALSEVVGRL 438 (609)
Q Consensus 418 V~I~G~~~~V~~A~~~I~~~L 438 (609)
|+|+|++++|+.|+.+|.++|
T Consensus 154 v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 154 FTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEECCHHHHHHHHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.88 E-value=1.6e-22 Score=191.31 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=125.4
Q ss_pred eEEEEEecccccccccccccchhhhhhhccCeeEEEecC--CCCCCccEEEEcccccccCCCChHHHHHHHHHhhhhhcc
Q 007293 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAP--LTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVE 351 (609)
Q Consensus 274 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~--~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~ 351 (609)
++++|.||.+++|.|||++|++|++|+++|||+|+|.+. .++..+|.|+|+|+. ..+..|...+.+.+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~------~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDP------YKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECH------HHHHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCH------HHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999753 345678999999974 455677777777665432
Q ss_pred cccCCCCCC--CCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHH
Q 007293 352 GQQGFSSGE--NKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQN 429 (609)
Q Consensus 352 ~~~g~~~g~--~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~ 429 (609)
..++.+.. ......+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.++ ...++.|+|+|++++|+.
T Consensus 76 -~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~~~~v~~ 149 (164)
T 2jvz_A 76 -QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEH 149 (164)
T ss_dssp -SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESCHHHHHH
T ss_pred -CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcCHHHHHH
Confidence 11121110 0111356889999999999999999999999999999999987432 355799999999999999
Q ss_pred HHHHHHHHhhhc
Q 007293 430 ALSEVVGRLRHN 441 (609)
Q Consensus 430 A~~~I~~~Lr~~ 441 (609)
|+.+|.++|++.
T Consensus 150 A~~~I~~~i~~~ 161 (164)
T 2jvz_A 150 AARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999998864
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.87 E-value=9.1e-22 Score=206.73 Aligned_cols=225 Identities=17% Similarity=0.106 Sum_probs=160.0
Q ss_pred CCceEEEEEeecceeeeeeecCc--chhhhcccccCcEEEecCCC---CCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 126 DDVAYCGLLANTTKIGVVVGKGG--RNVTRMRIESGAKIVMLPPP---ACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 126 ~~~vt~rllVP~~~vG~IIGkgG--~~Ik~I~~eSGa~I~I~~~p---~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
...+|+.+-||...++.||||+| ++|++|+++|||+|++.... ..+......|+|+|..++|++|..+|.+++-
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P- 105 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH- 105 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE-
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC-
Confidence 45899999999999999999999 99999999999999996531 1122455789999999999999999877431
Q ss_pred cCCCCCCCcccCCCccccccCCCCCCCCCcCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCcceEEEEEe
Q 007293 201 LSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNASEFHSSSADADRDHPGLDKKGRKQEVALRMLF 280 (609)
Q Consensus 201 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~p~~~~~P~~~~~~~~Ya~~~~p~~~~~~~~~p~~~~~~~~~~~~~~i~V 280 (609)
.++.+.+
T Consensus 106 -------------------------------------------------------------------------l~i~~el 112 (376)
T 3n89_A 106 -------------------------------------------------------------------------FTVFMAL 112 (376)
T ss_dssp -------------------------------------------------------------------------EEEEEEC
T ss_pred -------------------------------------------------------------------------ceEEEEc
Confidence 1223333
Q ss_pred cccccccccccccchhhhhhhccCeeEEEecCCC--CCCccEEEEcccccccCCCChHHHHHHHHHhhhhhcccccCCCC
Q 007293 281 SGWTASGIIGKRGAIVRSLQNASGALISFAAPLT--KSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSS 358 (609)
Q Consensus 281 P~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~--~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~~~~g~~~ 358 (609)
|...+.. ...+..|.+ ++.++++|.|..... +.....|+|+|.+ .....+.+|+..+.+.+.+..
T Consensus 113 p~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~---~nv~~akeA~~~Ll~~l~~~e------- 179 (376)
T 3n89_A 113 SKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITARE---KNQHELIEAAKRLNEILFRES------- 179 (376)
T ss_dssp TTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEG---GGHHHHHHHHHHHHHHHCC---------
T ss_pred cccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcCh---hhHHHHHHHHHHHHHHHHhhh-------
Confidence 3322221 111234444 678999999865321 1235679999985 223345677777776664321
Q ss_pred CCCCCCceEEEEEeccccccccccCCC--chhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHH
Q 007293 359 GENKGDAVAVSILVGADFVGCLTGSGS--SAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVG 436 (609)
Q Consensus 359 g~~~~~~~t~~l~VP~~~vG~IIGkgG--~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~ 436 (609)
......++.+|.|+..+|.+|||++| ..|++|+++|||+|.+++.++... ...+...|+|+|+.++|..|++.|.+
T Consensus 180 -~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d-~~~~~~~ItItGs~e~V~~Ark~I~~ 257 (376)
T 3n89_A 180 -PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNE-TRGNIYEIKVVGNIDNVLKARRYIMD 257 (376)
T ss_dssp -CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHH
T ss_pred -cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccc-ccCCceEEEEEeCHHHHHHHHHHHHh
Confidence 01134589999999999999999999 567999999999999987544110 11345789999999999999999999
Q ss_pred Hhh
Q 007293 437 RLR 439 (609)
Q Consensus 437 ~Lr 439 (609)
.|=
T Consensus 258 lLP 260 (376)
T 3n89_A 258 LLP 260 (376)
T ss_dssp TSE
T ss_pred hCC
Confidence 775
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.80 E-value=3.4e-19 Score=187.19 Aligned_cols=297 Identities=10% Similarity=0.093 Sum_probs=188.7
Q ss_pred CCCCCCCcEEEEEEecCCcccceecCCC--hHHHHHHHHhCceEEEcCCC-----CCCCceEEEEccCcchhhhhhhccc
Q 007293 17 PLNLPDDVVSFRLVCPTPVVGGLIGRSG--SIISSIRRDTKCRIHCEGGF-----PGSDHRVILVVGSGSIDRRIMFCEN 89 (609)
Q Consensus 17 ~~~~~~~~v~~RilvP~~~vG~IIGk~G--~~Ik~IreeTga~I~V~~~~-----~g~~eRvI~I~G~~e~~~~~~~~~~ 89 (609)
........+++.+-||..+++.||||+| ++|++|+++|||+|+|++.. +......|+|+|..++++
T Consensus 22 ~le~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE------- 94 (376)
T 3n89_A 22 MIEINPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVD------- 94 (376)
T ss_dssp CCCCCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHH-------
T ss_pred EEEecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHH-------
Confidence 3445578899999999999999999999 99999999999999998764 113457899999998843
Q ss_pred cccccCCCcchHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCC
Q 007293 90 DVVVEGGEVSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPA 169 (609)
Q Consensus 90 ~~~~e~~~~~~A~~Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~ 169 (609)
.|..+|..+. ++++.+-+|...++. ..-+..|.+ ++..|++|.+...+.
T Consensus 95 ----------~AR~~I~~l~------------------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~ 143 (376)
T 3n89_A 95 ----------RARMLMRRNC------------------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPE 143 (376)
T ss_dssp ----------HHHHHHHHSC------------------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-
T ss_pred ----------HHHHHHHhcC------------------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccc
Confidence 3544443211 455556566543322 111345555 678999999855211
Q ss_pred CCCCCCceEEEeccHHHHHHHHHHHHHHHhccCCCCCCCcccCCCccccccCCCCCCCCCcCCCcCCCCCCCCCCCCCCC
Q 007293 170 CAAIDDQLIQITGATLAVKKALVAVTTCLQHLSTMEKSPICFNRPIEKVFYSNSSDPHREFFPHLSLVPPLTGNPSDNAS 249 (609)
Q Consensus 170 ~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~p~~~~~P~~~~~~~~Ya~ 249 (609)
..+...-.|+|+|...+|.+|+.++..+++......
T Consensus 144 ~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e-------------------------------------------- 179 (376)
T 3n89_A 144 KNGIVTTYLRITAREKNQHELIEAAKRLNEILFRES-------------------------------------------- 179 (376)
T ss_dssp ----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC----------------------------------------------
T ss_pred ccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhh--------------------------------------------
Confidence 111124579999998777766666555554311000
Q ss_pred ccCCCCCCCCCCCCCCCccCCCcceEEEEEeccccccccccccc--chhhhhhhccCeeEEEecCCC----CCCccEEEE
Q 007293 250 EFHSSSADADRDHPGLDKKGRKQEVALRMLFSGWTASGIIGKRG--AIVRSLQNASGALISFAAPLT----KSGERVVTI 323 (609)
Q Consensus 250 ~~~p~~~~~~~~~p~~~~~~~~~~~~~~i~VP~~~vg~IIGk~G--~~Ik~I~~~tGa~I~i~~~~~----~s~er~vtI 323 (609)
......++..|.|+..+|..|||++| ..|++|+++||++|.|++... ......|+|
T Consensus 180 ------------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItI 241 (376)
T 3n89_A 180 ------------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKV 241 (376)
T ss_dssp ------------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEE
T ss_pred ------------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEE
Confidence 00124568889999999999999999 566999999999999986422 123468999
Q ss_pred cccccccCCCChHHHHHHHHHhhhhhcccccCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecC
Q 007293 324 SALEYLDTRHSPVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVG 403 (609)
Q Consensus 324 sG~e~p~~~~~~a~~A~~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~ 403 (609)
+|++ ..+.+|...|.+.+ .+...|.++.+..-.-...--..|-.+.++.++-|.|.+
T Consensus 242 tGs~------e~V~~Ark~I~~lL-----------------Pv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~ 298 (376)
T 3n89_A 242 VGNI------DNVLKARRYIMDLL-----------------PISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTP 298 (376)
T ss_dssp ESCH------HHHHHHHHHHHHTS-----------------EEEEEEEEEGGGBC--------CBEEEECTTSCEEEEEE
T ss_pred EeCH------HHHHHHHHHHHhhC-----------------CEEEEEecCCcccccccccchhHHHHHHHhcCeEEEEee
Confidence 9996 45556666665544 366777766654333333444456667889999999976
Q ss_pred CCcccccCCCC---CcEEEEcCC---HHHHHHHHHHHHH
Q 007293 404 GEQVLGCAAQN---DVVIQISGE---YKNVQNALSEVVG 436 (609)
Q Consensus 404 ~~~~P~~~~~~---er~V~I~G~---~~~V~~A~~~I~~ 436 (609)
..--|.....+ -..|.|++- .-++..|.+.+..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~s~e~n~~~~y~~~~~~l~ 337 (376)
T 3n89_A 299 SVYEPADLLSGEVPLNCASLRSKEFNIKKLYTAYQKVLS 337 (376)
T ss_dssp EEECCSSSSCCCEEEEEEEEEEEGGGHHHHHHHHHHHBC
T ss_pred cCCCchhhcccccccceEEEEEEeccHHHHHHHHHHHhC
Confidence 43212100111 144666654 4555566655544
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.70 E-value=4.6e-17 Score=150.77 Aligned_cols=137 Identities=16% Similarity=0.142 Sum_probs=100.8
Q ss_pred ceEEEEEecccccccccccccchhhhhhhccCeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHHhhhhhccc
Q 007293 273 EVALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEG 352 (609)
Q Consensus 273 ~~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~~ 352 (609)
.++.++.||.+.+|.+||++|++|+.|++++|..|..... +...+.+.|. +|+ ++..+.. +.+.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~----~~~~~i~~~~-------~p~--~v~~~~~-~l~~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE----DTCTFHIYGE-------DQD--AVKKARS-FLEF-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET----TTTEEEEEES-------SHH--HHHHHHH-HHCE--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC----CchheeeccC-------CHH--HHHHHHH-hhhc--
Confidence 4578899999999999999999999999999944332222 1234556664 222 2222211 1111
Q ss_pred ccCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCC-eEEecCCCcccccCCCCC--cEEEEcCCHHHHHH
Q 007293 353 QQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGT-DIKLVGGEQVLGCAAQND--VVIQISGEYKNVQN 429 (609)
Q Consensus 353 ~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa-~I~I~~~~~~P~~~~~~e--r~V~I~G~~~~V~~ 429 (609)
...++.||.+++|++|||+|++|+.|++.||| +|+|.+.++... ..++ +.|+|+|++++|+.
T Consensus 67 -------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~ 131 (144)
T 2qnd_A 67 -------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIAN 131 (144)
T ss_dssp -------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHH
T ss_pred -------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHH
Confidence 24899999999999999999999999999997 999987544211 1233 35899999999999
Q ss_pred HHHHHHHHhhh
Q 007293 430 ALSEVVGRLRH 440 (609)
Q Consensus 430 A~~~I~~~Lr~ 440 (609)
|+.+|..+|..
T Consensus 132 Ak~li~~~l~~ 142 (144)
T 2qnd_A 132 ATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.67 E-value=5.9e-17 Score=150.00 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=99.9
Q ss_pred cEEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHHH
Q 007293 24 VVSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQE 103 (609)
Q Consensus 24 ~v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~~ 103 (609)
.++.+++||.+.+|++||++|++|++|++++| |++-... +.+++.+...+.++.+
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~v---------------------- 57 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDAV---------------------- 57 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHHH----------------------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHHH----------------------
Confidence 46789999999999999999999999999999 5543221 1234544443334332
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCc-EEEecCCC-CCCCCCCc--eEE
Q 007293 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGA-KIVMLPPP-ACAAIDDQ--LIQ 179 (609)
Q Consensus 104 Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa-~I~I~~~p-~~~~~~dR--~V~ 179 (609)
..+.. +.. ...+++.||..++|++|||+|++|+.|++.||| +|.|.... ......++ .|+
T Consensus 58 --~~~~~-~l~-------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vt 121 (144)
T 2qnd_A 58 --KKARS-FLE-------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFV 121 (144)
T ss_dssp --HHHHH-HHC-------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEE
T ss_pred --HHHHH-hhh-------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEE
Confidence 11111 111 113789999999999999999999999999997 99998741 11122344 489
Q ss_pred EeccHHHHHHHHHHHHHHHhc
Q 007293 180 ITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 180 I~G~~e~V~~A~~~I~~~L~e 200 (609)
|+|+.++|.+|+.+|..+|..
T Consensus 122 I~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 122 FVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEHHHHHHHHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999965
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.54 E-value=7e-15 Score=144.77 Aligned_cols=147 Identities=16% Similarity=0.220 Sum_probs=99.7
Q ss_pred EEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHHHH
Q 007293 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEA 104 (609)
Q Consensus 25 v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~~A 104 (609)
-+.++.||.+++|.|||++|++|+.|+++|||+|+|+. +++.|.|.++....+ . ..+..|.+.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d------~------~~i~kA~~~ 96 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETED------P------LAVWKARDI 96 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCS------H------HHHHHHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCC------H------HHHHHHHHH
Confidence 35689999999999999999999999999999999963 256788887641100 0 002223333
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCceEEE-EEe-----ec------ceeeeeeecCcchhhhcccccCcEEEecCCCCCCC
Q 007293 105 VIRVFERMWEVEAEVEGDGDGDDVAYCG-LLA-----NT------TKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAA 172 (609)
Q Consensus 105 l~~v~~~i~~~~~~~~~~~~~~~~vt~r-llV-----P~------~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~ 172 (609)
+..+. .....+....-- .+...+. +-+ +. ..+|+||||+|++|+.|++.|||+|.|.
T Consensus 97 I~~i~---rg~~~e~g~~ll-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------- 165 (219)
T 2e3u_A 97 VLAIG---RGFSPERAFRLL-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------- 165 (219)
T ss_dssp HHHHH---TTCCHHHHGGGG-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-------
T ss_pred HHHHh---ccCCccccceec-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-------
Confidence 32222 000000000000 0011121 222 22 3689999999999999999999999994
Q ss_pred CCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 173 IDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 173 ~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
++.|.|.|++++|+.|..+|.+++.+.
T Consensus 166 --~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 166 --GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp --TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred --CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 367999999999999999999999663
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.51 E-value=1.9e-14 Score=141.61 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=105.2
Q ss_pred EEEEEecccccccccccccchhhhhhhccCeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHHhhhhhccccc
Q 007293 275 ALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQ 354 (609)
Q Consensus 275 ~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~~~~ 354 (609)
...+.||.+.+|.|||++|.+|+.|+++||++|.++.. ++.|+|.++....+ ...++.|...+...+.......
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d-~~~i~kA~~~I~~i~rg~~~e~ 108 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETED-PLAVWKARDIVLAIGRGFSPER 108 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCS-HHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCC-HHHHHHHHHHHHHHhccCCccc
Confidence 56799999999999999999999999999999999732 46799988731111 1345566655555432111110
Q ss_pred CCCCCCCCCCceEEEEEec-----------cccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCC
Q 007293 355 GFSSGENKGDAVAVSILVG-----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE 423 (609)
Q Consensus 355 g~~~g~~~~~~~t~~l~VP-----------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~ 423 (609)
+... . .....-..+.++ ...+|+||||+|++|+.|++.|||+|.|.. +.|.|.|+
T Consensus 109 g~~l-l-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i~G~ 174 (219)
T 2e3u_A 109 AFRL-L-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAIIGN 174 (219)
T ss_dssp HGGG-G-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEEEEC
T ss_pred ccee-c-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEEEeC
Confidence 0000 0 011122233333 237999999999999999999999999953 67999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007293 424 YKNVQNALSEVVGRLRH 440 (609)
Q Consensus 424 ~~~V~~A~~~I~~~Lr~ 440 (609)
+++++.|+.+|..+|..
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999965
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.47 E-value=4.5e-14 Score=115.32 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=65.3
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (609)
+..++.+|+||.+++|+|||++|++||+|+++|||+|+|.+. ...+|.|+|+|++++|.+|+.+|.++|++
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999999999999999999863 24589999999999999999999999986
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.46 E-value=1.3e-13 Score=115.08 Aligned_cols=73 Identities=19% Similarity=0.390 Sum_probs=66.1
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|.+.. ...+++.|+|+|++++|++|+.+|.+++++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~-----~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-----EGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT-----SCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCC-----CCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999997531 2457899999999999999999999999874
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.45 E-value=1.1e-13 Score=113.94 Aligned_cols=73 Identities=22% Similarity=0.361 Sum_probs=64.7
Q ss_pred eEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 007293 366 VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (609)
Q Consensus 366 ~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (609)
.+.+|.||.+++|+|||++|++|++|++.|||+|+|.+.++.. .+..++.|+|+|++++|++|+.+|.++|++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999999998754321 246789999999999999999999998864
No 20
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.45 E-value=7.6e-14 Score=114.86 Aligned_cols=72 Identities=21% Similarity=0.433 Sum_probs=65.7
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (609)
..++.+|.||.+++|+|||++|++|++|++.|||+|+|.+. . ...+++.|+|+|++++|++|+.+|.++|++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--V---EGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--C---TTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--C---CCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 45899999999999999999999999999999999999863 1 356789999999999999999999999875
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=1.1e-13 Score=115.52 Aligned_cols=73 Identities=16% Similarity=0.387 Sum_probs=65.3
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. ...+++.|+|+|++++|++|+.+|.+++++.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~-----~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPV-----EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCC-----CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 568999999999999999999999999999999999998632 2467899999999999999999999998864
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.42 E-value=7.7e-14 Score=113.93 Aligned_cols=70 Identities=30% Similarity=0.458 Sum_probs=65.5
Q ss_pred CceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 127 ~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. +..+|+|+|+|++++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999999999873 45789999999999999999999999976
No 23
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=114.28 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=63.6
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (609)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|++.+ +++.|+|+|++++|++|+++|.++++.
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 4668999999999999999999999999999999999998632 368999999999999999999998764
No 24
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.40 E-value=5.2e-13 Score=113.98 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=67.0
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+ ...++.|+|+|++++|++|+.+|.++|++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-----g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG-----GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT-----TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCC-----CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999999987432 356899999999999999999999999874
No 25
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=2.9e-13 Score=114.30 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=66.6
Q ss_pred eEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 366 VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 366 ~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
++.+|.||.+++|+|||++|++|++|++.|||+|+|.+.++.. .+..++.|+|+|++++|+.|+.+|.++|.+.-
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999998754321 24678999999999999999999999998753
No 26
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.39 E-value=2.8e-13 Score=114.93 Aligned_cols=74 Identities=20% Similarity=0.414 Sum_probs=67.0
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.+.. ...+++.|+|+|++++|++|+.+|.+++++.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL-----EGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC-----SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCC-----CCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999997531 2467899999999999999999999999875
No 27
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=4.8e-13 Score=117.39 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=65.7
Q ss_pred EEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+ | +.+.++++|+|+|++++|++|+.+|.++|++..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999999999987432 1 134568999999999999999999999998754
No 28
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=112.11 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=66.9
Q ss_pred ceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 128 ~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
.++.+|+||.+.+|+||||+|++|++|+++|||+|+|.+ .+++..+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN--PVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC--CCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC--CCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999999999987 35677899999999999999999999999975
No 29
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=2.9e-13 Score=113.03 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=66.7
Q ss_pred CceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 127 ~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
..++.+|+||.+.+|+||||+|++|++|+++|||+|+|.+. +++..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999999999999999999873 56778999999999999999999999999774
No 30
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.38 E-value=4.3e-13 Score=112.01 Aligned_cols=72 Identities=24% Similarity=0.414 Sum_probs=67.0
Q ss_pred CceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 127 ~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
..++++|+||.+.+|+||||+|++|++|+++|||+|+|.+ .+++..+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECC--TTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcC--CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999987 34567889999999999999999999999987
No 31
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.37 E-value=3.3e-13 Score=110.92 Aligned_cols=73 Identities=18% Similarity=0.311 Sum_probs=65.8
Q ss_pred ceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCC-CCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 128 ~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~-p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
.++++|+||.+.+|+||||+|++|++|+++|||+|+|.+. ...++..+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999875 234567899999999999999999999999864
No 32
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-12 Score=109.46 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=65.5
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (609)
...+.+|.||.+++|+||||+|++||+|+++|||+|.|.+.... ....+|.|+|+|+++++++|+.+|.+++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999999999999874321 246789999999999999999999998864
No 33
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.35 E-value=1.5e-12 Score=111.51 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=67.6
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.+.... ...++|.|+|+|++++|++|+.+|.++|++.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 567899999999999999999999999999999999999864331 1346899999999999999999999999864
No 34
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.33 E-value=6.5e-13 Score=112.68 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=68.1
Q ss_pred CCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 126 ~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
...++.+|+||.+.+|.||||+|++|++|+++|||+|+|.+ .++...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~--~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE--PLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECS--CCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecC--CCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 44789999999999999999999999999999999999987 345678999999999999999999999999873
No 35
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=1.5e-12 Score=113.96 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=64.4
Q ss_pred eEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 366 VAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 366 ~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
.+.+|.||.+++++||||+|++||+|+++|||+|+|.+... ...+|.|+|+|++++|++|+.+|.+++++.-
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999986432 3568999999999999999999999998753
No 36
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.33 E-value=1.2e-12 Score=125.78 Aligned_cols=145 Identities=15% Similarity=0.151 Sum_probs=100.3
Q ss_pred EEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHHHHH
Q 007293 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAV 105 (609)
Q Consensus 26 ~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~~Al 105 (609)
.++++||.+.+|.|||++|++++.|++++||+|+++. .++.++|.......+. ..+..|.+.+
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp------------~~i~KA~dlI 67 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPP------------VNLMKAAEVV 67 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCH------------HHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCH------------HHHHHHHHHH
Confidence 3689999999999999999999999999999999963 4677888732211000 0022344433
Q ss_pred HHHHHHHhhhhhccCCCCCCCCceEEEEE-ee----------cceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCC
Q 007293 106 IRVFERMWEVEAEVEGDGDGDDVAYCGLL-AN----------TTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAID 174 (609)
Q Consensus 106 ~~v~~~i~~~~~~~~~~~~~~~~vt~rll-VP----------~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~ 174 (609)
..+..- ...+... .-..+.+.+.++ ++ ....|+||||+|.+|+.|+..|||+|.|.
T Consensus 68 ~ai~rg-f~~e~A~---~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~--------- 134 (191)
T 1tua_A 68 KAISLG-FPPEKAF---RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG--------- 134 (191)
T ss_dssp HHHHHT-CCHHHHG---GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC---------
T ss_pred HHHHcC-CCHHHhh---hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc---------
Confidence 322211 0000000 000013334332 33 24689999999999999999999999994
Q ss_pred CceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 175 DQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 175 dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
++.|.|.|+++++..|...|.+++..
T Consensus 135 ~~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 135 EYEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp SSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999965
No 37
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=8.1e-13 Score=111.57 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=67.1
Q ss_pred ceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCC-CCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 128 ~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~-p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
.++++|+||.+.+|+||||+|++|++|+++|||+|.|.++ ...++..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999875 2346678999999999999999999999999763
No 38
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.31 E-value=2.3e-12 Score=123.84 Aligned_cols=145 Identities=19% Similarity=0.225 Sum_probs=102.9
Q ss_pred EEEEecccccccccccccchhhhhhhccCeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHHhhhhhcccccC
Q 007293 276 LRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFARSVEVEGQQG 355 (609)
Q Consensus 276 ~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~~i~e~~~~~g 355 (609)
+++.||.+.+|.|||++|++++.|++.+|++|+++. .++.|+|..+....++ ..++.|...+.........+..
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~dp-~~i~KA~dlI~ai~rgf~~e~A 79 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIPP-VNLMKAAEVVKAISLGFPPEKA 79 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSCH-HHHHHHHHHHHHHHHTCCHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCCH-HHHHHHHHHHHHHHcCCCHHHh
Confidence 578999999999999999999999999999999973 3678888744211111 3445555555332221110000
Q ss_pred CCCCCCCCCceEEEEEec----------cccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHH
Q 007293 356 FSSGENKGDAVAVSILVG----------ADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYK 425 (609)
Q Consensus 356 ~~~g~~~~~~~t~~l~VP----------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~ 425 (609)
. ..-.+...-..+.++ ....|+|||++|.+|+.|++.|||+|.|.. +.|.|.|+++
T Consensus 80 ~--~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------------~~v~i~G~~~ 145 (191)
T 1tua_A 80 F--RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------------YEVAIIGDYE 145 (191)
T ss_dssp G--GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------------SEEEEEEEHH
T ss_pred h--hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------------CEEEEEeChH
Confidence 0 000112223334444 246899999999999999999999999953 4899999999
Q ss_pred HHHHHHHHHHHHhhh
Q 007293 426 NVQNALSEVVGRLRH 440 (609)
Q Consensus 426 ~V~~A~~~I~~~Lr~ 440 (609)
+++.|+..|..++..
T Consensus 146 ~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 146 RAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998864
No 39
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=108.27 Aligned_cols=75 Identities=21% Similarity=0.403 Sum_probs=66.8
Q ss_pred CCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 126 ~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
....+.+|.||.+.+|+||||+|++|++|+++|||+|.|..+...+...+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 446789999999999999999999999999999999999885223456899999999999999999999998854
No 40
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=114.01 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=65.0
Q ss_pred EEEEEeecceeeeeeecCcchhhhcccccCcEEEecCC-CCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP-PACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 130 t~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~-p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
+++|+||.+++|+||||+|++||+|+++|||+|+|.++ .......+|+|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999885 2233457899999999999999999999999774
No 41
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.30 E-value=1.6e-12 Score=110.91 Aligned_cols=74 Identities=22% Similarity=0.390 Sum_probs=67.7
Q ss_pred CCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 126 ~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
...++.+|+||.+.+|+||||+|++|++|+++|||+|+|..+ .++..+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~--~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPD--SGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSC--CTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCC--CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 347899999999999999999999999999999999999874 34567899999999999999999999999874
No 42
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.29 E-value=4.2e-12 Score=110.85 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=67.4
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+. ...+++.|+|+|++++|++|+.+|.+++++..
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG---TLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---CCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 456899999999999999999999999999999999999874331 12358999999999999999999999998643
No 43
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=4.3e-12 Score=108.82 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=67.3
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
...++.+|.||.+++|.|||++|++|++|+++|||+|+|++..+ .+++.|+|+|++++|++|+++|...++++.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999976432 347899999999999999999999998875
Q ss_pred c
Q 007293 443 K 443 (609)
Q Consensus 443 ~ 443 (609)
-
T Consensus 88 ~ 88 (95)
T 2ctm_A 88 A 88 (95)
T ss_dssp T
T ss_pred H
Confidence 4
No 44
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.28 E-value=1.7e-12 Score=111.15 Aligned_cols=77 Identities=26% Similarity=0.430 Sum_probs=68.3
Q ss_pred CCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 125 ~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
....++.+|+||.+.+|+||||+|++||+|+++|||+|.|.++.......+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999999998852112457899999999999999999999999773
No 45
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=9.3e-12 Score=107.19 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=65.0
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhh
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRH 440 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~ 440 (609)
..++.+|.||.++++.|||++|++|++|+++|||+|+|++..+ | ...++.|+|+|+.+++++|+.+|...+++
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999987543 1 24679999999999999999999998875
No 46
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.26 E-value=5.5e-12 Score=102.29 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=61.0
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHh
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRL 438 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~L 438 (609)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. ..++.|+|+|+.++|++|+.+|...+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999998632 35689999999999999999998753
No 47
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=8.9e-12 Score=106.72 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=65.1
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
...++.+|.||.+++|.|||++|++||+|+++|||+|+|++.+ ..++.|+|+|++++|++|+.+|..++++..
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 3568999999999999999999999999999999999997632 235799999999999999999999988753
No 48
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.2e-12 Score=106.74 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 126 ~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
...++.+|.||.+.+|+||||+|++||+|+++|||+|+|.+. .++++|+|+|++++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-----~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-----DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-----SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-----CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 447899999999999999999999999999999999999752 2478999999999999999999998764
No 49
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=5.5e-12 Score=110.29 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=64.3
Q ss_pred eEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 129 AYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 129 vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
.+++|+||.+.+++||||+|++||+|+++|||+|+|.++ .....+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~--~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD--DGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSS--CSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999874 34557899999999999999999999999873
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.21 E-value=8.7e-12 Score=108.83 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=66.2
Q ss_pred CceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 127 ~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
.+++.+|+||.+.+|+||||+|++|++|+++|||+|.|.+........++.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 378899999999999999999999999999999999998741111236899999999999999999999999774
No 51
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=4.2e-11 Score=104.39 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=63.6
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
...+.+|.||.+++|.|||++|++|++|+++|||+|+|++.. ...+.|+|+|+.++|++|+.+|...+++.
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 458999999999999999999999999999999999998632 23469999999999999999999988764
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.11 E-value=3.6e-11 Score=97.44 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=60.7
Q ss_pred ceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHH
Q 007293 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCL 198 (609)
Q Consensus 128 ~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L 198 (609)
..+..|.||...+|.|||++|++|++|+++|||+|.|.++ +..+|.|+|+|..++|.+|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD----SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC----CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC----CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999773 336789999999999999999998764
No 53
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=6.5e-11 Score=101.90 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=64.8
Q ss_pred ceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 128 ~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
.+++.|.||...++.||||+|++|++|+++|||+|+|.++ ..+...++.|+|+|..+++.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~-g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDK-DDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCT-TTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCC-CCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999874 22334678999999999999999999999876
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.10 E-value=4.4e-11 Score=102.36 Aligned_cols=71 Identities=21% Similarity=0.269 Sum_probs=64.4
Q ss_pred CceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 127 DVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 127 ~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
..++.+|.||...+|.|||++|++|++|+++|||+|+|.+. ...++.|+|+|..++|.+|+.+|.+++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~----~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP----DDPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT----TSSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC----CCCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 47899999999999999999999999999999999999762 234689999999999999999999999774
No 55
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1e-10 Score=100.23 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=65.3
Q ss_pred CCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 126 ~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
...++..|.||...++.|||++|++|++|+++|||+|+|..+ ....++.|+|+|..++|.+|+.+|..++.+.
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~---g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS---GAPDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT---TCSCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCC---CCCCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999999999999663 2235789999999999999999999999774
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=2.1e-10 Score=98.17 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=64.9
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhh-CCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVT-GTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~T-Ga~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
.+.++.+|.||.++++.|||++|++||+|+++| ||+|.|++. +...+.|+|+|+.++|++|+.+|...+.+.
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999 999999762 234678999999999999999999988864
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.98 E-value=7.7e-10 Score=95.98 Aligned_cols=68 Identities=12% Similarity=0.193 Sum_probs=61.3
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHh-hCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhc
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDV-TGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHN 441 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~-TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~ 441 (609)
..++.+|.||.++|++|||++|++||+|+++ ++++|+|++ +++.|+|+|+++.|.+|+.+|...+++.
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999996 599999875 2578999999999999999999988764
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=3.1e-10 Score=98.83 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=62.8
Q ss_pred ceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 128 ~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
+++..|.||...++.|||++|++|++|+++|||+|.|.+. +...+.|+|+|..++|.+|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~----g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP----ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT----TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999999773 22456999999999999999999999876
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.81 E-value=2.4e-09 Score=91.58 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=64.9
Q ss_pred CCCceEEEEEeecceeeeeeecCcchhhhccccc-CcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 125 GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIES-GAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 125 ~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eS-Ga~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
.++.++..|.||..+++.|||++|++|++|+++| ||+|.|..+ +...+.|+|.|..++|.+|+.+|.+++.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE----GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT----TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC----CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3457889999999999999999999999999999 999999663 44567899999999999999999999976
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.79 E-value=4.2e-09 Score=91.34 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=60.9
Q ss_pred ceEEEEEeecceeeeeeecCcchhhhcccc-cCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhcc
Q 007293 128 VAYCGLLANTTKIGVVVGKGGRNVTRMRIE-SGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQHL 201 (609)
Q Consensus 128 ~vt~rllVP~~~vG~IIGkgG~~Ik~I~~e-SGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e~ 201 (609)
.++.+|.||..+++.|||++|++|++|+++ ++++|.+.. .++.|+|+|+++.|.+|..+|..++.+.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999997 599999844 4679999999999999999999999763
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.78 E-value=2.7e-09 Score=89.94 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=63.3
Q ss_pred CCceEEEEEeccccccccccCCCchhHHHHHhhCCe-EEecCCCcccccCCCCCcEEEEcC-CHHHHHHHHHHHHHHhhh
Q 007293 363 GDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTD-IKLVGGEQVLGCAAQNDVVIQISG-EYKNVQNALSEVVGRLRH 440 (609)
Q Consensus 363 ~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~-I~I~~~~~~P~~~~~~er~V~I~G-~~~~V~~A~~~I~~~Lr~ 440 (609)
...+..+|.||.+++|.+||++|++|++|++.|||+ |.|.+ ++..|+|.| +.+++++|+.+|...-..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 356899999999999999999999999999999998 99953 358899999 899999999999885555
Q ss_pred cccCc
Q 007293 441 NLKSG 445 (609)
Q Consensus 441 ~~~~~ 445 (609)
+.+++
T Consensus 82 ~~vp~ 86 (91)
T 2cpq_A 82 IQVPS 86 (91)
T ss_dssp CCCCS
T ss_pred EecCh
Confidence 55554
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.50 E-value=6.1e-08 Score=81.68 Aligned_cols=66 Identities=23% Similarity=0.253 Sum_probs=58.2
Q ss_pred CCceEEEEEeecceeeeeeecCcchhhhcccccCcE-EEecCCCCCCCCCCceEEEec-cHHHHHHHHHHHHHHH
Q 007293 126 DDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAK-IVMLPPPACAAIDDQLIQITG-ATLAVKKALVAVTTCL 198 (609)
Q Consensus 126 ~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~-I~I~~~p~~~~~~dR~V~I~G-~~e~V~~A~~~I~~~L 198 (609)
...+...|.||.+.+|.+||++|++|++|+++|||+ |.|.. ++..|+|.| +.+++.+|+.+|..+-
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-------ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-------DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-------TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-------CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 346888999999999999999999999999999998 99954 458999999 7999999998875544
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.45 E-value=3.5e-07 Score=82.65 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=63.3
Q ss_pred CceEEEEEeccc------cccccccCCCchhHHHHHhhCCeEEecCCCcc-----------cccCCCCCcEEEEcC-CHH
Q 007293 364 DAVAVSILVGAD------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV-----------LGCAAQNDVVIQISG-EYK 425 (609)
Q Consensus 364 ~~~t~~l~VP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-----------P~~~~~~er~V~I~G-~~~ 425 (609)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|....-. +.....++-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 347899999988 88999999999999999999999999763210 001123467888999 588
Q ss_pred HHHHHHHHHHHHhhhcc
Q 007293 426 NVQNALSEVVGRLRHNL 442 (609)
Q Consensus 426 ~V~~A~~~I~~~Lr~~~ 442 (609)
.+++|+.+|...|.+.+
T Consensus 85 ~~~~A~~~I~~ll~~~~ 101 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGI 101 (131)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999998754
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=1.9e-06 Score=76.36 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=58.4
Q ss_pred CceEEEEEeccc-------cccccccCCCchhHHHHHhhCCeEEecCCCcc---c--ccCCCCCcEEEEcC-CHHHHHHH
Q 007293 364 DAVAVSILVGAD-------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV---L--GCAAQNDVVIQISG-EYKNVQNA 430 (609)
Q Consensus 364 ~~~t~~l~VP~~-------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~---P--~~~~~~er~V~I~G-~~~~V~~A 430 (609)
...+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+... + .....++-.|.|++ +.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 357888888765 88999999999999999999999999643110 0 00112345677775 58999999
Q ss_pred HHHHHHHhhh
Q 007293 431 LSEVVGRLRH 440 (609)
Q Consensus 431 ~~~I~~~Lr~ 440 (609)
+.+|...|.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999998885
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.28 E-value=6.4e-07 Score=80.96 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=61.4
Q ss_pred ceEEEEEeecc------eeeeeeecCcchhhhcccccCcEEEecCCC--------------CCCCCCCceEEEecc-HHH
Q 007293 128 VAYCGLLANTT------KIGVVVGKGGRNVTRMRIESGAKIVMLPPP--------------ACAAIDDQLIQITGA-TLA 186 (609)
Q Consensus 128 ~vt~rllVP~~------~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p--------------~~~~~~dR~V~I~G~-~e~ 186 (609)
.++.++.||.. .+|.|||++|.+||+|+++|||+|.|..+. ......+-.|.|++. .++
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 68899999988 788999999999999999999999997630 001123668889995 999
Q ss_pred HHHHHHHHHHHHhc
Q 007293 187 VKKALVAVTTCLQH 200 (609)
Q Consensus 187 V~~A~~~I~~~L~e 200 (609)
+.+|+.+|.++|.+
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.4e-06 Score=77.23 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.5
Q ss_pred ceEEEEEeecc-------eeeeeeecCcchhhhcccccCcEEEecCCC--------CCCCCCCceEEEecc-HHHHHHHH
Q 007293 128 VAYCGLLANTT-------KIGVVVGKGGRNVTRMRIESGAKIVMLPPP--------ACAAIDDQLIQITGA-TLAVKKAL 191 (609)
Q Consensus 128 ~vt~rllVP~~-------~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p--------~~~~~~dR~V~I~G~-~e~V~~A~ 191 (609)
.++.+|.||-. .+|.|||++|.+||+|+++|||+|.|..+. ......+-.|.|.+. .+++.+|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 57888988875 788999999999999999999999997420 001123456778765 99999999
Q ss_pred HHHHHHHhc
Q 007293 192 VAVTTCLQH 200 (609)
Q Consensus 192 ~~I~~~L~e 200 (609)
.+|.++|.+
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999975
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.93 E-value=8.9e-06 Score=73.96 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=55.7
Q ss_pred eEEEEEeccc------cccccccCCCchhHHHHHhhCCeEEecCCCcc------------cccC-CCCCcEEEEcCC-HH
Q 007293 366 VAVSILVGAD------FVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQV------------LGCA-AQNDVVIQISGE-YK 425 (609)
Q Consensus 366 ~t~~l~VP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~------------P~~~-~~~er~V~I~G~-~~ 425 (609)
++.+|.||.+ ++|.|||++|.++|+|+++|||+|.|-.+.-. |.+. ..+.--|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 5678888854 49999999999999999999999999864421 1111 123347888884 32
Q ss_pred -----HHHHHHHHHHHHhh
Q 007293 426 -----NVQNALSEVVGRLR 439 (609)
Q Consensus 426 -----~V~~A~~~I~~~Lr 439 (609)
.+++|+.+|...|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 79999999999886
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.83 E-value=7.7e-06 Score=74.39 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=56.3
Q ss_pred eEEEEEeecce------eeeeeecCcchhhhcccccCcEEEecCCCCC----------------CCCCCceEEEecc-H-
Q 007293 129 AYCGLLANTTK------IGVVVGKGGRNVTRMRIESGAKIVMLPPPAC----------------AAIDDQLIQITGA-T- 184 (609)
Q Consensus 129 vt~rllVP~~~------vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~----------------~~~~dR~V~I~G~-~- 184 (609)
++.++.||-+. +|.|||++|.++|+|+++|||+|.|..+... ....+=-|.|++. .
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56788999766 8999999999999999999999999875110 0112237788885 3
Q ss_pred ----HHHHHHHHHHHHHHhc
Q 007293 185 ----LAVKKALVAVTTCLQH 200 (609)
Q Consensus 185 ----e~V~~A~~~I~~~L~e 200 (609)
..+.+|+.+|..+|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 3799999999999964
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.66 E-value=4.6e-05 Score=85.69 Aligned_cols=91 Identities=11% Similarity=0.099 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhhhhhcccccCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCC
Q 007293 335 PVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQN 414 (609)
Q Consensus 335 ~a~~A~~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~ 414 (609)
.+.++...|++.+.+..... .. ...........+.||.+++|.|||+||++||+|+++|||+|.|.+
T Consensus 538 ~A~~g~~~I~~~m~~al~~~-~~-~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d----------- 604 (630)
T 3u1k_A 538 QASVAKKEILQIMNKTISKP-RA-SRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD----------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHHCSSC-CS-SCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hh-hhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------
Confidence 34455556666554432111 10 112234578899999999999999999999999999999999953
Q ss_pred CcEEEEcCC-HHHHHHHHHHHHHHh
Q 007293 415 DVVIQISGE-YKNVQNALSEVVGRL 438 (609)
Q Consensus 415 er~V~I~G~-~~~V~~A~~~I~~~L 438 (609)
+-.|.|.|+ .+.+++|+.+|.+++
T Consensus 605 ~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 467999987 678999999987654
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.56 E-value=4.3e-05 Score=85.94 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=67.7
Q ss_pred chHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceE
Q 007293 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (609)
Q Consensus 99 ~~A~~Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V 178 (609)
..|.++...++..+.+...+.......-.+....+-||.+.++.|||+||++||+|+++|||+|.|.. +..|
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d--------~G~V 608 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD--------EETF 608 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS--------SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC--------CcEE
Confidence 45666666666655443322211112233567788999999999999999999999999999999954 4689
Q ss_pred EEecc-HHHHHHHHHHHHHHH
Q 007293 179 QITGA-TLAVKKALVAVTTCL 198 (609)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L 198 (609)
.|.|. .+++.+|+.+|..++
T Consensus 609 ~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 609 SVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEESSHHHHHHHHHHTTC--
T ss_pred EEEeCCHHHHHHHHHHHHHHh
Confidence 99987 789999999987664
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.54 E-value=0.00018 Score=64.18 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=59.7
Q ss_pred EEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhh
Q 007293 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLR 439 (609)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr 439 (609)
...|.|.++.++.|+|++|+.|+.|+..|+|.|+|..-+. ++...|+|.|++..-..|+.+|.....
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999987432 467899999999999999999987654
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.45 E-value=3.6e-05 Score=70.37 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=71.8
Q ss_pred EEEEEEecCCcccceecCCChHHHHHHHHhCceEEEcCCCCCCCceEEEEccCcch-hhhhhhccccccccCCCcchHHH
Q 007293 25 VSFRLVCPTPVVGGLIGRSGSIISSIRRDTKCRIHCEGGFPGSDHRVILVVGSGSI-DRRIMFCENDVVVEGGEVSSTQE 103 (609)
Q Consensus 25 v~~RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~V~~~~~g~~eRvI~I~G~~e~-~~~~~~~~~~~~~e~~~~~~A~~ 103 (609)
-.+.++|+...+|+.||++|+.|+.|+++.|-+|+|-....+ ++. +.++ ++||.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~~~fI~na-------------LsPA~- 90 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------LERIVKNL-------------FPGVK- 90 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------HHHHHHHH-------------STTSC-
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------HHHHHHHh-------------cCCce-
Confidence 356788999999999999999999999999999988443111 111 0000 11110
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEec
Q 007293 104 AVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVML 165 (609)
Q Consensus 104 Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~ 165 (609)
+....... . ++...+.+.||..+.+..|||+|.+++...+-||.+|.|.
T Consensus 91 --------V~~V~i~~----~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 91 --------IESINVRE----R-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp --------EEEEEEEE----E-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred --------EEEEEEee----c-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 00000000 0 1256788999999999999999999999999999887764
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.99 E-value=0.00065 Score=60.69 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=59.8
Q ss_pred EEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceEEEeccHHHHHHHHHHHHHHHhc
Q 007293 130 YCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLIQITGATLAVKKALVAVTTCLQH 200 (609)
Q Consensus 130 t~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V~I~G~~e~V~~A~~~I~~~L~e 200 (609)
.+.+.|.+..++.|+|++|+.|+.|+..|++.|++... ..+..--|+|.|++..=.+|+.+|..+..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~---~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW---GPERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC---CTTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc---CCCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999999999999999999884 223567799999999999999999988854
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.87 E-value=0.00061 Score=77.53 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhhhhcccccCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCC
Q 007293 335 PVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQN 414 (609)
Q Consensus 335 ~a~~A~~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~ 414 (609)
.+.++...|++.+.+... .... ..........++.||.++++.|||+||.+||+|+++|||+|.|.+
T Consensus 541 ~A~~g~~~I~~~m~~al~-~~r~-~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d----------- 607 (726)
T 4aid_A 541 QAKEGRAHILGEMNKAMD-APRA-DVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND----------- 607 (726)
T ss_dssp HHHHHHHHHHHHHHTTCS-SCCS-SCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-hhhh-hhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------
Confidence 344555666666544321 1110 112233457789999999999999999999999999999998853
Q ss_pred CcEEEEcCC-HHHHHHHHHHHHHHhhhcc
Q 007293 415 DVVIQISGE-YKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 415 er~V~I~G~-~~~V~~A~~~I~~~Lr~~~ 442 (609)
+..|.|.+. .+++++|+.+|...+.+.-
T Consensus 608 dG~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 608 DGVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp ------CCSCHHHHHHHHHC---------
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 455777776 7889999999998876543
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.76 E-value=0.00063 Score=77.47 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCce
Q 007293 98 VSSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQL 177 (609)
Q Consensus 98 ~~~A~~Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~ 177 (609)
+..|.++...++..+.+.............+....+-||.+.++.|||+||.+||+|.++||++|.|.. +..
T Consensus 539 L~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d--------dG~ 610 (726)
T 4aid_A 539 LAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND--------DGV 610 (726)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC--------Cce
Confidence 345556666666655443322111111222445678899999999999999999999999999999954 456
Q ss_pred EEEecc-HHHHHHHHHHHHHHHhc
Q 007293 178 IQITGA-TLAVKKALVAVTTCLQH 200 (609)
Q Consensus 178 V~I~G~-~e~V~~A~~~I~~~L~e 200 (609)
|.|.+. .+++.+|+.+|..++.+
T Consensus 611 v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 611 VKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp ---CCSCHHHHHHHHHC-------
T ss_pred EEEEeCCHHHHHHHHHHHHHHhhh
Confidence 777776 99999999999988864
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.69 E-value=0.00077 Score=61.57 Aligned_cols=103 Identities=20% Similarity=0.210 Sum_probs=72.8
Q ss_pred eEEEEEecccccccccccccchhhhhhhccCeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHH--hhhhhcc
Q 007293 274 VALRMLFSGWTASGIIGKRGAIVRSLQNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVE 351 (609)
Q Consensus 274 ~~~~i~VP~~~vg~IIGk~G~~Ik~I~~~tGa~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~--~~i~e~~ 351 (609)
..+.+.|+...+|..||++|++|+.|+++.|-+|.+-....+ +. .-+...+ .++....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-------------------~~-~fI~naLsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-------------------LE-RIVKNLFPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-------------------HH-HHHHHHSTTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-------------------HH-HHHHHhcCCceEEEEE
Confidence 367788999999999999999999999999999877643211 10 1111110 0111110
Q ss_pred cccCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecC
Q 007293 352 GQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVG 403 (609)
Q Consensus 352 ~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~ 403 (609)
.. ..+......+.||.++.+..|||+|++++...+-||.+|.|.+
T Consensus 96 i~-------~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 96 VR-------ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp EE-------EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred Ee-------ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 00 0023467889999999999999999999999999999987753
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.51 E-value=0.0037 Score=61.97 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=63.2
Q ss_pred CcccceecCCChHHHHH-HHHhCceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHHHHHHHHHHHH
Q 007293 34 PVVGGLIGRSGSIISSI-RRDTKCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVIRVFERM 112 (609)
Q Consensus 34 ~~vG~IIGk~G~~Ik~I-reeTga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~~Al~~v~~~i 112 (609)
+-+|+-||++|++|+.| ++-.|-+|+|-....+ ++. .+...+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p~~--------------------------fi~nal 168 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------PAR--------------------------FVANAL 168 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------HHH--------------------------HHHHHT
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-----------HHH--------------------------HHHhcc
Confidence 45899999999999999 5666888887433211 100 111111
Q ss_pred hhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCC
Q 007293 113 WEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (609)
Q Consensus 113 ~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~ 167 (609)
.......- .-.......+.+.||..+.+.-|||+|.+|+.-..-||.+|.|...
T Consensus 169 sPA~V~~V-~i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 169 SPAKVVSV-SVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TTSCCSEE-EEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred CCcceEEE-EEEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 10000000 0000012468899999999999999999999999999999999764
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.33 E-value=0.0048 Score=64.51 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=64.9
Q ss_pred CcccceecCCChHHHHHHHHh-CceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHHHHHHHHHHHH
Q 007293 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVIRVFERM 112 (609)
Q Consensus 34 ~~vG~IIGk~G~~Ik~IreeT-ga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~~Al~~v~~~i 112 (609)
+-+|+.||++|++|+.|.++. |-+|+|-....+ + + ..+...+
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p----------------------~----~fi~nal 291 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------P----------------------A----RFVANAL 291 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------H----------------------H----HHHHHHT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-----------H----------------------H----HHHHHhc
Confidence 568999999999999999999 888887432111 0 0 0011111
Q ss_pred hhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCC
Q 007293 113 WEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPP 167 (609)
Q Consensus 113 ~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~ 167 (609)
.......-. ........+.+.||..+.+..|||+|.+++....-||.+|.|...
T Consensus 292 sPA~V~~V~-~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 292 SPAKVVSVS-VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTSCCSEEE-EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CCcceeEEE-EEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 100000000 000014578899999999999999999999999999999999764
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=93.90 E-value=0.057 Score=53.46 Aligned_cols=96 Identities=20% Similarity=0.194 Sum_probs=65.4
Q ss_pred cccccccccccchhhhh-hhccCeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHHh--hhhhcccccCCCCC
Q 007293 283 WTASGIIGKRGAIVRSL-QNASGALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVFA--RSVEVEGQQGFSSG 359 (609)
Q Consensus 283 ~~vg~IIGk~G~~Ik~I-~~~tGa~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~~--~i~e~~~~~g~~~g 359 (609)
+-+|.-||++|.+|+.| ++-.|-+|.|-...++ ++ .-+...+. ++......
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------------p~-~fi~nalsPA~V~~V~i~------ 179 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------------PA-RFVANALSPAKVVSVSVI------ 179 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------------HH-HHHHHHTTTSCCSEEEEE------
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-------------------HH-HHHHhccCCcceEEEEEE------
Confidence 45799999999999999 6777888877643211 11 11111110 11100000
Q ss_pred CCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCc
Q 007293 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (609)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~ 406 (609)
.....+..+.||.++.+.-|||+|++|+.-.+-||.+|.|.+..+
T Consensus 180 --~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 180 --DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp --ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred --cCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 011247899999999999999999999999999999999987554
No 80
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.39 E-value=0.025 Score=58.81 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=63.2
Q ss_pred CcccceecCCChHHHHHHHHh-CceEEEcCCCCCCCceEEEEccCcchhhhhhhccccccccCCCcchHHHHHHHHHHHH
Q 007293 34 PVVGGLIGRSGSIISSIRRDT-KCRIHCEGGFPGSDHRVILVVGSGSIDRRIMFCENDVVVEGGEVSSTQEAVIRVFERM 112 (609)
Q Consensus 34 ~~vG~IIGk~G~~Ik~IreeT-ga~I~V~~~~~g~~eRvI~I~G~~e~~~~~~~~~~~~~~e~~~~~~A~~Al~~v~~~i 112 (609)
+-+|+.||.+|+.|+.+.++. |-+|.|-....+ + + ..+...+
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d-----------~----------------------~----~fi~nal 287 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD-----------P----------------------K----QLIANAL 287 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS-----------H----------------------H----HHHHHHT
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC-----------H----------------------H----HHHHHhc
Confidence 468999999999999999998 777776332111 0 0 0111111
Q ss_pred hhhhhccCCCCC-CCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecC
Q 007293 113 WEVEAEVEGDGD-GDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLP 166 (609)
Q Consensus 113 ~~~~~~~~~~~~-~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~ 166 (609)
...... ...- ......+.+.||..+.+.-|||+|.+++.-..-||.+|.|..
T Consensus 288 ~Pa~v~--~v~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 288 APATVI--EVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp CSSCCS--EEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CccEEE--EEEEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 000000 0000 011457889999999999999999999999999999999865
No 81
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=93.10 E-value=0.083 Score=55.17 Aligned_cols=96 Identities=20% Similarity=0.180 Sum_probs=66.0
Q ss_pred cccccccccccchhhhhhhcc-CeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHH--hhhhhcccccCCCCC
Q 007293 283 WTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEGQQGFSSG 359 (609)
Q Consensus 283 ~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~--~~i~e~~~~~g~~~g 359 (609)
+-+|..||++|.+|+.|.++. |-+|.|-....+ ++ .-+...+ .++.....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-------------------p~-~fi~nalsPA~V~~V~~------- 301 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-------------------PA-RFVANALSPAKVVSVSV------- 301 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-------------------HH-HHHHHHTTTSCCSEEEE-------
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC-------------------HH-HHHHHhcCCcceeEEEE-------
Confidence 568999999999999999998 777776532111 11 1111111 01110000
Q ss_pred CCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCc
Q 007293 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQ 406 (609)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~ 406 (609)
.........+.||.++.+..|||+|.+++...+-||.+|.|....+
T Consensus 302 -~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 302 -IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp -EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred -EcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 0012357899999999999999999999999999999999987544
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=93.06 E-value=0.03 Score=63.95 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=9.2
Q ss_pred chHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceE
Q 007293 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (609)
Q Consensus 99 ~~A~~Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V 178 (609)
..|.++...++..+.+........-..-.+....+-||.+.++.+||++|.+|+.|.+++|+.|.|.. +..|
T Consensus 530 ~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~--------dg~v 601 (723)
T 3cdi_A 530 NQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED--------DGTV 601 (723)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC--------CccE
Confidence 34555555555554443222111111122445667889999999999999999999999999998843 4567
Q ss_pred EEecc-HHHHHHHHHHHHHHHh
Q 007293 179 QITGA-TLAVKKALVAVTTCLQ 199 (609)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L~ 199 (609)
.|.+. .+.+.+|..+|..++.
T Consensus 602 ~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 602 KIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------
T ss_pred EEecCCHHHHHHHHHHHHHHhh
Confidence 77665 6778888877776654
No 83
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.98 E-value=0.023 Score=65.20 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=33.4
Q ss_pred chHHHHHHHHHHHHhhhhhccCCCCCCCCceEEEEEeecceeeeeeecCcchhhhcccccCcEEEecCCCCCCCCCCceE
Q 007293 99 SSTQEAVIRVFERMWEVEAEVEGDGDGDDVAYCGLLANTTKIGVVVGKGGRNVTRMRIESGAKIVMLPPPACAAIDDQLI 178 (609)
Q Consensus 99 ~~A~~Al~~v~~~i~~~~~~~~~~~~~~~~vt~rllVP~~~vG~IIGkgG~~Ik~I~~eSGa~I~I~~~p~~~~~~dR~V 178 (609)
..|.++...++..+.+..... .....-.+....+-||.+.++.+||++|.+||+|.+++|+.|.|.. +..|
T Consensus 569 ~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--------dG~v 639 (757)
T 1e3p_A 569 KQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED--------DGTI 639 (757)
T ss_dssp HHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC--------CceE
Confidence 445556666665554433222 1111122334457789999999999999999999999999998843 4667
Q ss_pred EEecc-HHHHHHHHHHHHHHH
Q 007293 179 QITGA-TLAVKKALVAVTTCL 198 (609)
Q Consensus 179 ~I~G~-~e~V~~A~~~I~~~L 198 (609)
.|+.. .+...+|...|..+.
T Consensus 640 ~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 640 YIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCBSSHHHHCC---------
T ss_pred EEecCCHHHHHHHHHHHHHhc
Confidence 77765 777777776666554
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.46 E-value=0.019 Score=65.77 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhhhhhcccccCCCCCCCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCC
Q 007293 335 PVQNAAVLVFARSVEVEGQQGFSSGENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQN 414 (609)
Q Consensus 335 ~a~~A~~~i~~~i~e~~~~~g~~~g~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~ 414 (609)
.+.++...|++.+.+..... ............+.||.+++|.+||++|.+||+|++.+|+.|.|..
T Consensus 570 ~A~~~~~~I~~~m~~al~~~---~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~----------- 635 (757)
T 1e3p_A 570 QARDARLHILDVMMEAIDTP---DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED----------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHCSSC---CCCCTTSCBCCCC------------------CTTCCCCCSCC---------------
T ss_pred HHHHHHHHHHHHHHHHhccc---ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------
Confidence 34455555665554432211 1111223445678899999999999999999999999999998853
Q ss_pred CcEEEEcCC-HHHHHHHHHHHHHH
Q 007293 415 DVVIQISGE-YKNVQNALSEVVGR 437 (609)
Q Consensus 415 er~V~I~G~-~~~V~~A~~~I~~~ 437 (609)
+..|.|+.. .+..++|+..|...
T Consensus 636 dG~v~Is~~~~~~~~~a~~~i~~i 659 (757)
T 1e3p_A 636 DGTIYIGAADGPAAEAARATINGI 659 (757)
T ss_dssp ----CCCBSSHHHHCC--------
T ss_pred CceEEEecCCHHHHHHHHHHHHHh
Confidence 355777665 55666776666553
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.65 E-value=0.057 Score=61.66 Aligned_cols=66 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred CceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCC-HHHHHHHHHHHHHHhhh
Q 007293 364 DAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGE-YKNVQNALSEVVGRLRH 440 (609)
Q Consensus 364 ~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~-~~~V~~A~~~I~~~Lr~ 440 (609)
......+.||.++++.+||++|.+|+.|.++||+.|.|.. +..|.|.+. .+.+++|+..|...+.+
T Consensus 558 ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 558 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 3456788999999999999999999999999999997743 355667665 55777888877665543
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=89.57 E-value=0.068 Score=55.59 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=63.4
Q ss_pred cccccccccccchhhhhhhcc-CeeEEEecCCCCCCccEEEEcccccccCCCChHHHHHHHHH--hhhhhcccccCCCCC
Q 007293 283 WTASGIIGKRGAIVRSLQNAS-GALISFAAPLTKSGERVVTISALEYLDTRHSPVQNAAVLVF--ARSVEVEGQQGFSSG 359 (609)
Q Consensus 283 ~~vg~IIGk~G~~Ik~I~~~t-Ga~I~i~~~~~~s~er~vtIsG~e~p~~~~~~a~~A~~~i~--~~i~e~~~~~g~~~g 359 (609)
+-+|..||.+|.+|+.+.++. |-+|.+-.-.+ .++ .-+...+ .++....+.
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~-------------------d~~-~fi~nal~Pa~v~~v~~~------ 298 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSD-------------------DPK-QLIANALAPATVIEVEIL------ 298 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS-------------------SHH-HHHHHHTCSSCCSEEEEE------
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCC-------------------CHH-HHHHHhcCccEEEEEEEE------
Confidence 457999999999999999887 66666543211 111 1111110 011111000
Q ss_pred CCCCCceEEEEEeccccccccccCCCchhHHHHHhhCCeEEecCC
Q 007293 360 ENKGDAVAVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGG 404 (609)
Q Consensus 360 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~ 404 (609)
.....+..+.||.++.+.-|||+|.+++.-.+-||.+|.|...
T Consensus 299 --d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 299 --DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp --ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred --cCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 0123478999999999999999999999999999999999753
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=58.99 E-value=3.7 Score=34.15 Aligned_cols=28 Identities=11% Similarity=0.211 Sum_probs=23.8
Q ss_pred EEEEecCCcccceecCCChHHHHHHHHh
Q 007293 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (609)
Q Consensus 27 ~RilvP~~~vG~IIGk~G~~Ik~IreeT 54 (609)
.+|.+...+-|.|||++|+.|++|+.+.
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 5677788899999999999999988764
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=58.38 E-value=4.6 Score=36.83 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=25.0
Q ss_pred EEEEecCCcccceecCCChHHHHHHHHhCc
Q 007293 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTKC 56 (609)
Q Consensus 27 ~RilvP~~~vG~IIGk~G~~Ik~IreeTga 56 (609)
+.+-+-....|.||||.|.+++.|+--+..
T Consensus 35 i~i~i~ged~glLIGK~G~TL~ALQyL~~~ 64 (152)
T 2pt7_G 35 LLIDIDGEDSALLIGEKGYRYKALSYLLFN 64 (152)
T ss_dssp EEEEEEEGGGTTTTCGGGHHHHHHHHHHHH
T ss_pred EEEEEecCCcceEECCCCcchHHHHHHHHH
Confidence 445556889999999999999999988754
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=46.37 E-value=9 Score=34.90 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=45.6
Q ss_pred EEEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhccc
Q 007293 367 AVSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNLK 443 (609)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~~ 443 (609)
+..+.+-.+..|.||||.|.+++.||--+..-+ .+. ..-.-.+-|-|=-+.-+..+..++.++.+...
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v--n~~-------~~~~V~LDve~YRerReetL~~lA~~~A~kV~ 101 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWI--HPT-------YGYSIRLEISTFLQNQEKVMDTQLQSVIMTVH 101 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH--HHH-------HSCEEEEEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHh--hhc-------CCceEEEEhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 466777788999999999999999987662222 110 00123345666667777788888777776543
No 90
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=37.71 E-value=43 Score=25.66 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=32.0
Q ss_pred hHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 388 VSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 388 Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
|++-++..|+--... +.++-.+.|+|-|++|.+-+..=.++|.+.+
T Consensus 23 irqarkfagtvtytl---------dgndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 23 IRQARKFAGTVTYTL---------DGNDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp HHHHTTTTCEEEEEE---------CSSCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcceEEEEe---------cCCeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 444444555544333 3456789999999999998887788887654
No 91
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=35.57 E-value=13 Score=30.82 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.1
Q ss_pred EEEEEeccccccccccCCCchhHHHHH
Q 007293 367 AVSILVGADFVGCLTGSGSSAVSEMED 393 (609)
Q Consensus 367 t~~l~VP~~~vG~IIGkgG~~Ik~I~~ 393 (609)
..++.|-...-|.|||++|..|++|+.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 566777777889999999998888754
No 92
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=28.17 E-value=21 Score=34.92 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=24.3
Q ss_pred EEEEecCCcccceecCCChHHHHHHHHhC
Q 007293 27 FRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (609)
Q Consensus 27 ~RilvP~~~vG~IIGk~G~~Ik~IreeTg 55 (609)
.+|.+....-|.|||++|+.|++|+.+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l~ 74 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLVQ 74 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 56777888999999999999999887643
No 93
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.72 E-value=23 Score=33.86 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.0
Q ss_pred EEEEecCCcccceecCCChHHHHHHHHh
Q 007293 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (609)
Q Consensus 27 ~RilvP~~~vG~IIGk~G~~Ik~IreeT 54 (609)
.+|.+....-|.|||++|+.|++|+.+.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4566677889999999999999987653
No 94
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=26.27 E-value=28 Score=34.11 Aligned_cols=29 Identities=10% Similarity=0.051 Sum_probs=24.5
Q ss_pred EEEEEecCCcccceecCCChHHHHHHHHh
Q 007293 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (609)
Q Consensus 26 ~~RilvP~~~vG~IIGk~G~~Ik~IreeT 54 (609)
..+|.+....-|.|||++|+.|++|+.+.
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 35677788899999999999999988764
No 95
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.49 E-value=1e+02 Score=29.60 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=43.2
Q ss_pred EEEEeccccccccccCCCchhHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHH
Q 007293 368 VSILVGADFVGCLTGSGSSAVSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEV 434 (609)
Q Consensus 368 ~~l~VP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I 434 (609)
.-+.++...+.+++|+++..++.|.+.+++.|-+-. +-.|=|.++......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHH
Confidence 345789999999999999999999999999998843 33466888876555444444
No 96
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.44 E-value=29 Score=34.72 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=25.2
Q ss_pred ceEEEEEecc-ccccccccCCCchhHHHHHhh
Q 007293 365 AVAVSILVGA-DFVGCLTGSGSSAVSEMEDVT 395 (609)
Q Consensus 365 ~~t~~l~VP~-~~vG~IIGkgG~~Ik~I~~~T 395 (609)
.+...+.|.. ++-+-|||++|+.||+|....
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~a 270 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRA 270 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHH
Confidence 4778888877 578899999999999875543
No 97
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=24.98 E-value=21 Score=34.56 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=24.9
Q ss_pred EEEEEecCCcccceecCCChHHHHHHHHhC
Q 007293 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (609)
Q Consensus 26 ~~RilvP~~~vG~IIGk~G~~Ik~IreeTg 55 (609)
-.+|.+....-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 356777888999999999999999877643
No 98
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=23.18 E-value=27 Score=33.82 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.9
Q ss_pred EEEecCCcccceecCCChHHHHHHHHhCceEE
Q 007293 28 RLVCPTPVVGGLIGRSGSIISSIRRDTKCRIH 59 (609)
Q Consensus 28 RilvP~~~vG~IIGk~G~~Ik~IreeTga~I~ 59 (609)
.|-+.....|.||||.|.+++.||.-++.-+.
T Consensus 95 ~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 95 NVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 34446778999999999999999999885443
No 99
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=21.03 E-value=24 Score=33.73 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=22.1
Q ss_pred EEEEecCCcccceecCCChHHHHHHHHh
Q 007293 27 FRLVCPTPVVGGLIGRSGSIISSIRRDT 54 (609)
Q Consensus 27 ~RilvP~~~vG~IIGk~G~~Ik~IreeT 54 (609)
.+|.+....-|.|||++|+.|++|+++.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l 90 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 3455567788999999999999887653
No 100
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=20.87 E-value=1.1e+02 Score=26.25 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=34.0
Q ss_pred hHHHHHhhCCeEEecCCCcccccCCCCCcEEEEcCCHHHHHHHHHHHHHHhhhcc
Q 007293 388 VSEMEDVTGTDIKLVGGEQVLGCAAQNDVVIQISGEYKNVQNALSEVVGRLRHNL 442 (609)
Q Consensus 388 Ik~I~~~TGa~I~I~~~~~~P~~~~~~er~V~I~G~~~~V~~A~~~I~~~Lr~~~ 442 (609)
|++-++..|+--...+ .++-.+.|+|-|++|.+-+..=.++|...|
T Consensus 105 irqarkfagtvtytl~---------gn~l~i~itgvpeqvrkelakeaerl~~ef 150 (170)
T 4hhu_A 105 IRQARKFAGTVTYTLS---------GNRLVIVITGVPEQVRKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHTTCEEEEEEC---------SSEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceEEEEEe---------CCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 5666666676554433 445678999999999998888888888654
No 101
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.53 E-value=25 Score=34.39 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=24.8
Q ss_pred EEEEEecCCcccceecCCChHHHHHHHHhC
Q 007293 26 SFRLVCPTPVVGGLIGRSGSIISSIRRDTK 55 (609)
Q Consensus 26 ~~RilvP~~~vG~IIGk~G~~Ik~IreeTg 55 (609)
-.+|.+....-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 355677788899999999999999888653
Done!