BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007296
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 557 bits (1435), Expect = e-159, Method: Compositional matrix adjust.
Identities = 268/336 (79%), Positives = 301/336 (89%), Gaps = 1/336 (0%)
Query: 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFL 60
M+NLI+LVNKIQRACTALGDHG+ SALPTLWDSLP+IA LES+VGKDFL
Sbjct: 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFL 60
Query: 61 PRGSGIVTRRPLVLQLHKIQEG-KEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKA 119
PRGSGIVTRRPLVLQL KI +G +EYAEF+HLPRK+F DFAAVRKEI DETDRETGRSKA
Sbjct: 61 PRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKA 120
Query: 120 ISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAI 179
IS+VPIHLSI+SPNVVNLTLIDLPGLTKVAVDGQ +SIV+DIENMVRSYIEKPNCIILAI
Sbjct: 121 ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180
Query: 180 SPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGV 239
SPANQDLATSDAIKISREVDP GDRTFGVLTKIDLMDKGTDAV+ILEG+S+KL+YPW+GV
Sbjct: 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240
Query: 240 VNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIP 299
VNRSQADINK+VDMIAAR+RE EYF N+ EY HL ++MGSE+L K+LSKHLE VIKSRIP
Sbjct: 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIP 300
Query: 300 GLQSLISKTISELEAELTRLGKPIANDAGGKLYTAM 335
G+QSLI+KT+ ELE EL+RLGKPIA+ ++ A+
Sbjct: 301 GIQSLINKTVLELETELSRLGKPIAHGTDSRVDPAI 336
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 26/28 (92%)
Query: 578 DPAVMQRRTNLAKRLELYRSAQSEIEMV 605
DPA+M+RR+ ++KRLELYR+AQSEI+ V
Sbjct: 333 DPAIMERRSAISKRLELYRAAQSEIDAV 360
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 352 bits (904), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 197/496 (39%), Positives = 286/496 (57%), Gaps = 21/496 (4%)
Query: 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFL 60
M++LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 3 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 54
Query: 61 PRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAI 120
PRGSGIVTRRPLVLQL + EYAEF+H K+F DF VR EI ETDR TG +K I
Sbjct: 55 PRGSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 112
Query: 121 STVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAIS 180
S VPI+L ++SP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+S
Sbjct: 113 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVS 172
Query: 181 PANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240
PAN DLA SDA+K+++EVDP+G RT GV+TK+DLMD+GTDA D+LE K LR +IGVV
Sbjct: 173 PANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 232
Query: 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPG 300
NRSQ DI+ D+ AA E ++F + P Y HL DRMG+ YL KVL++ L I+ +PG
Sbjct: 233 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG 292
Query: 301 LQSLISKTISELEAELTRLGKPIANDAGGKLYTAMEISRAFDQIFKEHLDGVR------- 353
L++ + + +E E+ +D K +++ + F F++ ++G
Sbjct: 293 LRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYE 352
Query: 354 -PGGDKIYGVFDNQLPAGLKRLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIES 412
GG +I +F + P L +++FD+ + I A L P+ + +++
Sbjct: 353 LSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIVKK 412
Query: 413 CLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDESR 472
+ IR P VD ++ EL+ T +L+QYP LR E+ + ++
Sbjct: 413 QVKKIREPCLKCVDM---VISELISTVRQCTKKLQQYPRLREEMERIVTTHIREREGRTK 469
Query: 473 RATLQLVDMECCYLTV 488
+ L+D+E Y+
Sbjct: 470 EQVMLLIDIELAYMNT 485
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 348 bits (892), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 194/496 (39%), Positives = 286/496 (57%), Gaps = 21/496 (4%)
Query: 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFL 60
M++LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 26 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 77
Query: 61 PRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAI 120
PRGSGIVTRRPLVLQL + EYAEF+H K+F DF VR EI ETDR TG +K I
Sbjct: 78 PRGSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 135
Query: 121 STVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAIS 180
S VPI+L ++SP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+S
Sbjct: 136 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVS 195
Query: 181 PANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240
PAN DLA SDA+KI++EVDP+G RT GV+TK+DLMD+GTDA D+LE K LR +IGVV
Sbjct: 196 PANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 255
Query: 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPG 300
NRSQ DI+ D+ AA E ++F + P Y HL DRMG+ YL KVL++ L I+ +PG
Sbjct: 256 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG 315
Query: 301 LQSLISKTISELEAELTRLGKPIANDAGGKLYTAMEISRAFDQIFKEHLDGVR------- 353
L++ + + +E E+ +D K +++ + F F++ ++G
Sbjct: 316 LRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYE 375
Query: 354 -PGGDKIYGVFDNQLPAGLKRLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIES 412
GG +I +F + P L +++FD+ + I + L P+ + ++
Sbjct: 376 LSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKK 435
Query: 413 CLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDESR 472
+ ++ P+ VD + L ++K + +L+QYP LR E+ + ++
Sbjct: 436 QVQKLKEPSIKCVDMVVSELTSTIRKC---SEKLQQYPRLREEMERIVTTHIREREGRTK 492
Query: 473 RATLQLVDMECCYLTV 488
+ L+D+E Y+
Sbjct: 493 EQVMLLIDIELAYMNT 508
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/316 (50%), Positives = 214/316 (67%), Gaps = 10/316 (3%)
Query: 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFL 60
M++LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 57
Query: 61 PRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAI 120
PRGSGIVTRRPLVLQL + EYAEF+H K+F DF VR EI ETDR TG +K I
Sbjct: 58 PRGSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 115
Query: 121 STVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAIS 180
S VPI+L ++SP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+S
Sbjct: 116 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVS 175
Query: 181 PANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240
PAN DLA SDA+K+++EVDP+G RT GV+TK+DLMD+GTDA D+LE K LR +IGVV
Sbjct: 176 PANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 235
Query: 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPG 300
NRSQ DI+ D+ AA E ++F + P Y HL DRMG+ YL KVL++ L I+ +PG
Sbjct: 236 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG 295
Query: 301 LQSLISKTISELEAEL 316
L++ + + +E E+
Sbjct: 296 LRNKLQSQLLSIEKEV 311
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 311 bits (797), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 160/303 (52%), Positives = 208/303 (68%), Gaps = 10/303 (3%)
Query: 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFL 60
M++LI LVN++Q A +A+G + + LP IA LE+ VG+DFL
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFL 52
Query: 61 PRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAI 120
PRGSGIVTRRPLVLQL + EYAEF+H K+F DF VR EI ETDR TG +K I
Sbjct: 53 PRGSGIVTRRPLVLQL--VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGI 110
Query: 121 STVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAIS 180
S VPI+L ++SP+V+NLTL+DLPG+TKV V QP I I +M+ ++ K NC+ILA+S
Sbjct: 111 SPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVS 170
Query: 181 PANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240
PAN DLA SDA+KI++EVDP+G RT GV+TK+DLMD+GTDA D+LE K LR +IGVV
Sbjct: 171 PANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 230
Query: 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPG 300
NRSQ DI+ D+ AA E ++F + P Y HL DRMG+ YL KVL++ L I+ +PG
Sbjct: 231 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG 290
Query: 301 LQS 303
L++
Sbjct: 291 LRN 293
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 301 bits (771), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 157/315 (49%), Positives = 209/315 (66%), Gaps = 10/315 (3%)
Query: 2 DNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLP 61
++LI LVN++Q A +A+G + + LP IA LE+ VG+DFLP
Sbjct: 7 EDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLP 58
Query: 62 RGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAIS 121
RGSGIVTRRPLVLQL + EYAEF+H K+F DF VR EI ETDR TG +K IS
Sbjct: 59 RGSGIVTRRPLVLQL--VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGIS 116
Query: 122 TVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181
VPI+L ++SP+V+NLTL+DLPG TKV V QP I I + + ++ K NC+ILA+SP
Sbjct: 117 PVPINLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSP 176
Query: 182 ANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVN 241
AN DLA SDA+K+++EVDP+G RT GV+TK+DL D+GTDA D+LE K LR +IGVVN
Sbjct: 177 ANSDLANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYIGVVN 236
Query: 242 RSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGL 301
RSQ DI+ D+ AA E ++F + P Y HL DR G+ YL KVL++ L I+ +PGL
Sbjct: 237 RSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDTLPGL 296
Query: 302 QSLISKTISELEAEL 316
++ + + +E E+
Sbjct: 297 RNKLQSQLLSIEKEV 311
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 155/303 (51%), Positives = 204/303 (67%), Gaps = 10/303 (3%)
Query: 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFL 60
M+ LI LVN++Q A +ALG + LP IA LE+ VG+DFL
Sbjct: 19 MEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFL 70
Query: 61 PRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAI 120
PRGSGIVTRRPLVLQL I EYAEF+H K+F DF VR EI ETDR TG +K I
Sbjct: 71 PRGSGIVTRRPLVLQL--ITSKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGI 128
Query: 121 STVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAIS 180
S++PI+L ++SP+V+NLTLIDLPG+TKV V QP I I M+ +I + NC+ILA++
Sbjct: 129 SSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVT 188
Query: 181 PANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240
PAN DLA SDA+K+++EVDP+G RT GV+TK+DLMD+GTDA D+LE K LR ++GVV
Sbjct: 189 PANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVGVV 248
Query: 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPG 300
NRSQ DI+ D+ AA E ++F + P Y H+ DRMG+ +L KVL++ L I+ +P
Sbjct: 249 NRSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTLPN 308
Query: 301 LQS 303
++
Sbjct: 309 FRN 311
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 150/322 (46%), Positives = 208/322 (64%), Gaps = 15/322 (4%)
Query: 2 DNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGKDFLP 61
D LI ++NK+Q LG + LP I LE++VG+DFLP
Sbjct: 1 DQLIPVINKLQDVFNTLGSDPLD---------LPQIVVVGSQSSGKSSVLENIVGRDFLP 51
Query: 62 RGSGIVTRRPLVLQLHKI------QEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115
RGSGIVTRRPL+LQL + + +E+ EF+H P F DF+ +R+EI +TDR TG
Sbjct: 52 RGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTG 111
Query: 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCI 175
++K IS PI+L I+SP+VVNLTL+DLPG+TKV V QP I Q I MV +YI+K N I
Sbjct: 112 KNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAI 171
Query: 176 ILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP 235
I+A++PAN DLA SDA+++++EVDP G RT GV+TK+DLMDKGTDA+++L G+ L
Sbjct: 172 IVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231
Query: 236 WIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIK 295
+IGV+NRSQ DI + + + E YFKN P Y + +R G+ YL K L+K L I+
Sbjct: 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIR 291
Query: 296 SRIPGLQSLISKTISELEAELT 317
+P L+ +SK +S+++ EL+
Sbjct: 292 DTLPDLKVKVSKMLSDVQGELS 313
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 16/372 (4%)
Query: 2 DNLITLVNKIQRACTALGDH----GEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGK 57
+NL + + R C L D G E L +LP+IA LE++ G
Sbjct: 39 NNLCSQYEEKVRPCIDLIDSLRALGVEQDL-----ALPAIAVIGDQSSGKSSVLEALSGV 93
Query: 58 DFLPRGSGIVTRRPLVLQLHK-IQEGKEYAEFMHLPRK-RFNDFAAVRKEISDETDRETG 115
LPRGSGIVTR PLVL+L K + E K + + + +D + V KEI+ + G
Sbjct: 94 A-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG 152
Query: 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCI 175
IS I L I S +V +LTLIDLPG+T+VAV QP I I+ +++ YI++ I
Sbjct: 153 EGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI 212
Query: 176 ILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKLR 233
L + P+N D+AT++A+ +++EVDP GDRT G+LTK DL+DKGT+ VD++ + L+
Sbjct: 213 SLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLK 272
Query: 234 YPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEY--LGKVLSKHLE 291
++ V R Q +I + + A +RE +F+N P + L + + L + L+ L
Sbjct: 273 KGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELI 332
Query: 292 TVIKSRIPGLQSLISKTISELEAELTRLGKPIANDAGGKLYTAMEISRAFDQIFKEHLDG 351
T I +P L++ I +T + EL + G I D K++ ++ AF+Q + G
Sbjct: 333 THICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQG 392
Query: 352 VRPGGDKIYGVF 363
G++ +F
Sbjct: 393 EETVGEEDIRLF 404
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 16/372 (4%)
Query: 2 DNLITLVNKIQRACTALGDH----GEESALPTLWDSLPSIAXXXXXXXXXXXXLESVVGK 57
+NL + + R C L D G E L +LP+IA LE++ G
Sbjct: 14 NNLCSQYEEKVRPCIDLIDSLRALGVEQDL-----ALPAIAVIGDQSSGKSSVLEALSGV 68
Query: 58 DFLPRGSGIVTRRPLVLQLHK-IQEGKEYAEFMHLPRK-RFNDFAAVRKEISDETDRETG 115
LPRGSGIVTR PLVL+L K + E K + + + +D + V KEI+ + G
Sbjct: 69 A-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG 127
Query: 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCI 175
IS I L I S +V +LTLIDLPG+T+VAV QP I I+ +++ YI++ I
Sbjct: 128 EGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETI 187
Query: 176 ILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKLR 233
L + P+N D+AT++A+ +++EVDP GDRT G+LTK DL+DKGT+ VD++ + L+
Sbjct: 188 SLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLK 247
Query: 234 YPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEY--LGKVLSKHLE 291
++ V R Q +I + + A +RE +F+N P + L + + L + L+ L
Sbjct: 248 KGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELI 307
Query: 292 TVIKSRIPGLQSLISKTISELEAELTRLGKPIANDAGGKLYTAMEISRAFDQIFKEHLDG 351
T I +P L++ I +T + EL + G I D K++ ++ AF+Q + G
Sbjct: 308 THICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQG 367
Query: 352 VRPGGDKIYGVF 363
G++ +F
Sbjct: 368 EETVGEEDIRLF 379
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 356 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 406
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 221 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 271
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 220 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 270
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 221 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 271
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 208 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 258
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 208 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 258
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 212 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 262
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 226 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 276
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 227 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 277
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 210 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 260
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 223 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 273
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 225 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 275
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 225 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 275
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + + G+L LVQ
Sbjct: 224 IVEAGGMQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQ 274
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 389 ITEADGYQP---HLIAPEQGYRRLIESCLVTIRGPAEAAV--DAIHGILKELVQ 437
I EA G Q HL P Q RL+++CL T+R ++AA + G+L LVQ
Sbjct: 165 IVEAGGXQALGLHLTDPSQ---RLVQNCLWTLRNLSDAATKQEGXEGLLGTLVQ 215
>pdb|3EYJ|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYK|B Chain B, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 172
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 422 EAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDESR--------- 472
+AA+D I+G L L++K+ + ++++ E IQ LE+ ++++
Sbjct: 42 QAAIDQINGKLNRLIEKTNEKYHQIEK----EFEQVEGRIQDLEKYVEDTKIDLWSYNAE 97
Query: 473 -------RATLQLVDMECCYLTVEFFRKLPQDAEKGGNPTHSIFDRYSDTYLRRI 520
+ T+ + D E L R+L ++AE GN IF + + + I
Sbjct: 98 LLVALENQHTIDVTDSEMNKLFERVRRQLRENAEDQGNGCFEIFHQCDNNCIESI 152
>pdb|3PNN|A Chain A, The Crystal Structure Of A Glycosyltransferase From
Porphyromonas Gingivalis W83
Length = 303
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 347 EHLDGVRPGGDKI--YGVFDNQLPAGLKRLQFDKHLSMDNV--RKLITEADGYQP 397
+ LDG+ PGGD I Y V+D + AG RL F S + K++T+ +G P
Sbjct: 23 KQLDGIGPGGDTIXDYSVYD-AIRAGFGRLVFVIRHSFEKEFREKILTKYEGRIP 76
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 295 KSRIPGLQSLISKTISELEAELTRLGKPIANDAGGKLYTAMEISRAFDQIFKEHL--DGV 352
K RI G + KT L + K +A GG++YT +I+ ++I ++L G+
Sbjct: 246 KQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIGIKYLGPKGI 305
Query: 353 RPGGD 357
P D
Sbjct: 306 YPNVD 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,114,716
Number of Sequences: 62578
Number of extensions: 699968
Number of successful extensions: 1790
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1752
Number of HSP's gapped (non-prelim): 35
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)