Query 007296
Match_columns 609
No_of_seqs 373 out of 2862
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 21:39:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 2.3E-98 5E-103 829.8 48.4 596 1-609 4-657 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 3.8E-47 8.2E-52 375.0 25.0 239 1-249 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 1.8E-46 3.9E-51 387.0 25.4 265 222-488 2-275 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 1E-31 2.2E-36 277.5 34.5 421 3-437 283-725 (980)
5 smart00302 GED Dynamin GTPase 99.9 5.8E-24 1.2E-28 179.1 12.3 89 515-605 4-92 (92)
6 COG1159 Era GTPase [General fu 99.9 1.3E-22 2.8E-27 200.7 11.6 223 33-320 5-230 (298)
7 PF00350 Dynamin_N: Dynamin fa 99.9 1E-21 2.2E-26 185.7 15.5 166 37-212 1-168 (168)
8 PF02212 GED: Dynamin GTPase e 99.9 2.4E-21 5.2E-26 163.7 11.9 89 515-605 4-92 (92)
9 TIGR00436 era GTP-binding prot 99.8 1.7E-19 3.8E-24 183.9 11.8 210 35-309 1-211 (270)
10 PRK00089 era GTPase Era; Revie 99.8 4E-18 8.7E-23 176.1 12.2 214 33-309 4-218 (292)
11 PRK15494 era GTPase Era; Provi 99.7 1.5E-17 3.2E-22 174.6 12.4 211 35-310 53-264 (339)
12 COG1160 Predicted GTPases [Gen 99.7 2.5E-17 5.5E-22 172.0 12.3 160 34-257 3-163 (444)
13 PF02421 FeoB_N: Ferrous iron 99.7 3.4E-18 7.4E-23 157.8 2.7 149 36-252 2-154 (156)
14 COG0486 ThdF Predicted GTPase 99.7 1.9E-15 4E-20 158.5 19.9 179 4-256 194-373 (454)
15 PRK09866 hypothetical protein; 99.7 1.1E-12 2.4E-17 142.6 39.5 212 35-256 70-350 (741)
16 TIGR03156 GTP_HflX GTP-binding 99.6 8.4E-15 1.8E-19 154.2 15.8 158 33-254 188-347 (351)
17 PRK12298 obgE GTPase CgtA; Rev 99.6 1.1E-14 2.4E-19 154.9 15.6 181 34-275 159-349 (390)
18 COG1084 Predicted GTPase [Gene 99.6 7.2E-15 1.6E-19 147.0 13.1 157 3-218 136-296 (346)
19 KOG1423 Ras-like GTPase ERA [C 99.6 2.7E-15 5.8E-20 147.7 9.6 212 33-303 71-312 (379)
20 COG0218 Predicted GTPase [Gene 99.6 8.7E-15 1.9E-19 137.9 12.1 128 33-219 23-152 (200)
21 COG1160 Predicted GTPases [Gen 99.6 3.5E-15 7.7E-20 156.0 9.8 191 33-292 177-372 (444)
22 PRK11058 GTPase HflX; Provisio 99.6 2.4E-14 5.3E-19 154.1 15.9 161 33-256 196-359 (426)
23 PRK12299 obgE GTPase CgtA; Rev 99.6 3E-14 6.5E-19 148.8 14.5 165 33-257 157-326 (335)
24 TIGR00450 mnmE_trmE_thdF tRNA 99.5 4.5E-13 9.8E-18 145.1 21.6 179 4-258 181-359 (442)
25 PRK05291 trmE tRNA modificatio 99.5 2.8E-13 6E-18 147.5 20.1 155 33-258 214-369 (449)
26 cd01878 HflX HflX subfamily. 99.5 1.7E-13 3.6E-18 133.8 14.3 157 33-252 40-198 (204)
27 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 1.1E-13 2.5E-18 130.0 11.8 155 35-255 1-162 (168)
28 cd01867 Rab8_Rab10_Rab13_like 99.5 1.3E-13 2.8E-18 130.1 11.2 157 34-255 3-161 (167)
29 COG0370 FeoB Fe2+ transport sy 99.5 2.1E-13 4.6E-18 148.9 14.2 157 34-256 3-161 (653)
30 PRK12296 obgE GTPase CgtA; Rev 99.5 1.5E-13 3.2E-18 149.0 12.8 183 15-258 140-339 (500)
31 cd04163 Era Era subfamily. Er 99.5 2.9E-13 6.4E-18 126.2 13.2 157 34-251 3-161 (168)
32 TIGR03594 GTPase_EngA ribosome 99.5 3.4E-13 7.3E-18 147.0 15.6 166 33-255 171-340 (429)
33 cd01865 Rab3 Rab3 subfamily. 99.5 2.1E-13 4.4E-18 128.5 11.9 156 35-256 2-160 (165)
34 cd01898 Obg Obg subfamily. Th 99.5 1.8E-13 3.9E-18 129.0 11.5 157 36-252 2-164 (170)
35 cd04112 Rab26 Rab26 subfamily. 99.5 3.3E-13 7.2E-18 130.4 13.1 117 135-264 50-168 (191)
36 cd01868 Rab11_like Rab11-like. 99.5 3E-13 6.4E-18 127.1 12.2 156 34-254 3-160 (165)
37 cd01897 NOG NOG1 is a nucleola 99.5 5.2E-13 1.1E-17 125.7 13.5 157 35-253 1-162 (168)
38 PRK00454 engB GTP-binding prot 99.5 3.7E-13 7.9E-18 130.3 12.4 164 33-258 23-193 (196)
39 TIGR03598 GTPase_YsxC ribosome 99.5 3.7E-13 8.1E-18 128.7 12.0 155 33-247 17-178 (179)
40 cd01866 Rab2 Rab2 subfamily. 99.5 5.5E-13 1.2E-17 126.0 12.7 158 34-257 4-164 (168)
41 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 6E-13 1.3E-17 129.2 13.3 166 36-260 2-185 (196)
42 PRK03003 GTP-binding protein D 99.5 7.1E-13 1.5E-17 145.7 15.4 189 33-291 210-402 (472)
43 PRK03003 GTP-binding protein D 99.5 3.3E-13 7.1E-18 148.4 12.7 161 33-258 37-198 (472)
44 TIGR02729 Obg_CgtA Obg family 99.5 4.7E-13 1E-17 139.7 13.0 162 33-254 156-324 (329)
45 PRK12297 obgE GTPase CgtA; Rev 99.5 6.1E-13 1.3E-17 142.4 14.1 159 34-255 158-323 (424)
46 cd01861 Rab6 Rab6 subfamily. 99.5 5.2E-13 1.1E-17 124.7 12.0 154 36-254 2-157 (161)
47 cd01895 EngA2 EngA2 subfamily. 99.4 1.1E-12 2.4E-17 123.4 13.8 161 34-251 2-167 (174)
48 cd04122 Rab14 Rab14 subfamily. 99.4 4.9E-13 1.1E-17 125.9 11.3 155 35-254 3-159 (166)
49 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 5.2E-13 1.1E-17 125.6 11.4 157 34-255 2-160 (166)
50 PRK04213 GTP-binding protein; 99.4 7.9E-13 1.7E-17 128.7 12.6 163 33-256 8-189 (201)
51 cd04145 M_R_Ras_like M-Ras/R-R 99.4 8.5E-13 1.8E-17 123.6 12.3 107 135-254 50-159 (164)
52 PRK00093 GTP-binding protein D 99.4 7.5E-13 1.6E-17 144.5 13.7 165 33-254 172-339 (435)
53 cd04119 RJL RJL (RabJ-Like) su 99.4 5.6E-13 1.2E-17 125.0 10.8 154 36-255 2-163 (168)
54 KOG1191 Mitochondrial GTPase [ 99.4 3.8E-12 8.3E-17 133.3 17.7 144 13-219 251-406 (531)
55 cd04142 RRP22 RRP22 subfamily. 99.4 1.3E-12 2.8E-17 127.1 13.4 162 36-255 2-170 (198)
56 cd04136 Rap_like Rap-like subf 99.4 8.9E-13 1.9E-17 123.3 11.6 154 35-254 2-158 (163)
57 TIGR03594 GTPase_EngA ribosome 99.4 7.3E-13 1.6E-17 144.4 12.5 157 36-257 1-158 (429)
58 PF01926 MMR_HSR1: 50S ribosom 99.4 1.2E-12 2.6E-17 115.8 11.6 115 36-211 1-116 (116)
59 smart00173 RAS Ras subfamily o 99.4 1.4E-12 3E-17 122.3 12.3 154 36-255 2-158 (164)
60 PRK00093 GTP-binding protein D 99.4 1.1E-12 2.5E-17 143.1 13.5 158 34-256 1-159 (435)
61 cd04120 Rab12 Rab12 subfamily. 99.4 1.1E-12 2.4E-17 127.7 11.7 156 36-256 2-160 (202)
62 PRK09518 bifunctional cytidyla 99.4 2.2E-12 4.9E-17 148.4 16.1 161 33-258 274-435 (712)
63 cd04113 Rab4 Rab4 subfamily. 99.4 1.4E-12 3.1E-17 121.9 11.7 154 36-254 2-157 (161)
64 cd04109 Rab28 Rab28 subfamily. 99.4 1.1E-12 2.5E-17 129.2 11.5 158 36-257 2-164 (215)
65 COG2262 HflX GTPases [General 99.4 3.7E-12 8.1E-17 131.5 15.4 189 6-257 164-354 (411)
66 smart00175 RAB Rab subfamily o 99.4 1.8E-12 3.9E-17 121.2 11.9 155 36-256 2-159 (164)
67 cd04138 H_N_K_Ras_like H-Ras/N 99.4 2.1E-12 4.6E-17 120.3 11.9 153 35-254 2-157 (162)
68 PRK09518 bifunctional cytidyla 99.4 2.2E-12 4.7E-17 148.5 14.4 163 33-255 449-617 (712)
69 cd04139 RalA_RalB RalA/RalB su 99.4 2.3E-12 4.9E-17 120.5 11.9 154 36-255 2-158 (164)
70 cd01862 Rab7 Rab7 subfamily. 99.4 2.1E-12 4.5E-17 122.0 11.6 156 36-257 2-165 (172)
71 cd04101 RabL4 RabL4 (Rab-like4 99.4 2.9E-12 6.3E-17 120.1 12.5 107 134-254 51-159 (164)
72 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 1.6E-12 3.5E-17 123.2 10.8 159 36-259 2-165 (170)
73 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 5.1E-13 1.1E-17 123.7 7.0 164 33-261 21-187 (221)
74 cd04171 SelB SelB subfamily. 99.4 1.6E-12 3.5E-17 121.5 10.6 102 134-252 50-159 (164)
75 cd01860 Rab5_related Rab5-rela 99.4 2.5E-12 5.3E-17 120.4 11.8 154 36-254 3-158 (163)
76 cd01864 Rab19 Rab19 subfamily. 99.4 1.7E-12 3.6E-17 122.1 10.7 154 34-252 3-159 (165)
77 cd04144 Ras2 Ras2 subfamily. 99.4 2.6E-12 5.6E-17 124.1 12.2 115 135-262 47-166 (190)
78 cd04157 Arl6 Arl6 subfamily. 99.4 2.5E-12 5.5E-17 120.1 11.9 108 134-254 44-159 (162)
79 cd04164 trmE TrmE (MnmE, ThdF, 99.4 6.9E-12 1.5E-16 116.1 14.6 148 36-252 3-150 (157)
80 cd01879 FeoB Ferrous iron tran 99.4 2.4E-12 5.2E-17 119.6 11.3 108 135-254 43-152 (158)
81 PRK09554 feoB ferrous iron tra 99.4 2E-12 4.2E-17 148.4 12.7 161 34-256 3-165 (772)
82 cd04127 Rab27A Rab27a subfamil 99.4 2.1E-12 4.4E-17 123.3 10.9 107 135-255 63-173 (180)
83 cd01894 EngA1 EngA1 subfamily. 99.4 1.8E-12 3.9E-17 120.1 10.2 107 135-253 45-152 (157)
84 cd04175 Rap1 Rap1 subgroup. T 99.4 2.9E-12 6.4E-17 120.2 11.7 154 35-254 2-158 (164)
85 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 4.3E-12 9.4E-17 121.8 12.9 116 35-216 4-123 (183)
86 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 2.8E-12 6E-17 125.0 11.5 158 36-258 2-167 (201)
87 cd04176 Rap2 Rap2 subgroup. T 99.4 2.7E-12 5.9E-17 120.2 11.0 153 36-254 3-158 (163)
88 cd04110 Rab35 Rab35 subfamily. 99.4 3.8E-12 8.2E-17 123.9 12.1 160 33-259 5-167 (199)
89 cd04111 Rab39 Rab39 subfamily. 99.4 3.3E-12 7.1E-17 125.5 11.8 160 35-258 3-165 (211)
90 cd01890 LepA LepA subfamily. 99.4 3.4E-12 7.4E-17 121.5 11.2 103 134-254 66-172 (179)
91 cd00154 Rab Rab family. Rab G 99.4 3E-12 6.6E-17 118.3 10.6 152 35-252 1-155 (159)
92 cd04125 RabA_like RabA-like su 99.4 4E-12 8.7E-17 122.4 11.7 159 35-258 1-161 (188)
93 cd00880 Era_like Era (E. coli 99.4 9.9E-12 2.2E-16 114.4 13.6 110 134-251 44-156 (163)
94 cd04106 Rab23_lke Rab23-like s 99.4 4.3E-12 9.3E-17 118.6 11.2 106 135-254 51-158 (162)
95 cd01881 Obg_like The Obg-like 99.4 2.6E-12 5.6E-17 121.7 9.6 112 134-251 43-169 (176)
96 cd00881 GTP_translation_factor 99.4 5.4E-12 1.2E-16 120.8 11.8 69 134-217 61-129 (189)
97 PRK15467 ethanolamine utilizat 99.3 9.9E-12 2.1E-16 116.4 13.0 105 139-258 41-146 (158)
98 PLN03118 Rab family protein; P 99.3 9.1E-12 2E-16 122.4 13.3 162 34-261 14-179 (211)
99 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 8.3E-12 1.8E-16 118.6 12.3 155 36-256 4-161 (172)
100 cd04154 Arl2 Arl2 subfamily. 99.3 6.6E-12 1.4E-16 119.2 11.6 150 33-252 13-168 (173)
101 cd04140 ARHI_like ARHI subfami 99.3 7.3E-12 1.6E-16 117.9 11.7 154 35-254 2-160 (165)
102 cd04114 Rab30 Rab30 subfamily. 99.3 8E-12 1.7E-16 117.7 12.0 156 33-254 6-164 (169)
103 cd04123 Rab21 Rab21 subfamily. 99.3 9.5E-12 2.1E-16 115.9 12.1 154 36-254 2-157 (162)
104 cd01893 Miro1 Miro1 subfamily. 99.3 8.2E-12 1.8E-16 117.7 11.5 115 36-218 2-119 (166)
105 cd04156 ARLTS1 ARLTS1 subfamil 99.3 1E-11 2.2E-16 115.9 11.7 147 36-252 1-155 (160)
106 PLN03110 Rab GTPase; Provision 99.3 7.7E-12 1.7E-16 123.4 11.4 158 34-256 12-171 (216)
107 cd04104 p47_IIGP_like p47 (47- 99.3 1.2E-11 2.6E-16 120.1 12.6 120 35-216 2-121 (197)
108 PTZ00369 Ras-like protein; Pro 99.3 1.2E-11 2.6E-16 119.3 12.3 156 34-255 5-163 (189)
109 cd04159 Arl10_like Arl10-like 99.3 1.4E-11 3E-16 114.0 12.2 146 36-252 1-154 (159)
110 cd04177 RSR1 RSR1 subgroup. R 99.3 1.2E-11 2.5E-16 116.8 11.7 153 36-254 3-159 (168)
111 cd04160 Arfrp1 Arfrp1 subfamil 99.3 8.6E-12 1.9E-16 117.3 10.7 105 134-252 49-162 (167)
112 cd04151 Arl1 Arl1 subfamily. 99.3 9.1E-12 2E-16 116.3 10.8 105 135-253 43-154 (158)
113 cd04124 RabL2 RabL2 subfamily. 99.3 1.1E-11 2.4E-16 116.2 11.3 151 36-255 2-154 (161)
114 cd04117 Rab15 Rab15 subfamily. 99.3 9.8E-12 2.1E-16 116.6 10.9 154 36-254 2-157 (161)
115 PLN03108 Rab family protein; P 99.3 1.1E-11 2.3E-16 121.8 11.6 157 34-255 6-164 (210)
116 cd04158 ARD1 ARD1 subfamily. 99.3 1E-11 2.2E-16 117.4 10.8 112 134-259 42-161 (169)
117 cd04121 Rab40 Rab40 subfamily. 99.3 1.2E-11 2.7E-16 119.2 11.4 160 33-258 5-166 (189)
118 TIGR02528 EutP ethanolamine ut 99.3 2.1E-11 4.5E-16 111.6 12.4 100 138-252 38-138 (142)
119 cd04149 Arf6 Arf6 subfamily. 99.3 1.1E-11 2.3E-16 117.3 10.8 150 33-253 8-164 (168)
120 PF10662 PduV-EutP: Ethanolami 99.3 9.2E-12 2E-16 112.6 9.6 99 139-254 40-141 (143)
121 cd00876 Ras Ras family. The R 99.3 1.4E-11 3.1E-16 114.4 11.2 152 36-253 1-155 (160)
122 COG0699 Predicted GTPases (dyn 99.3 9.5E-10 2.1E-14 123.5 27.9 470 84-600 2-542 (546)
123 cd01863 Rab18 Rab18 subfamily. 99.3 2.5E-11 5.3E-16 113.4 12.6 150 36-252 2-155 (161)
124 cd04118 Rab24 Rab24 subfamily. 99.3 1.8E-11 3.8E-16 118.4 11.8 109 136-258 51-165 (193)
125 KOG0084 GTPase Rab1/YPT1, smal 99.3 8.5E-12 1.8E-16 116.2 8.9 163 31-258 6-171 (205)
126 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.9E-11 4E-16 115.5 11.3 71 134-218 42-116 (167)
127 cd00157 Rho Rho (Ras homology) 99.3 7.8E-12 1.7E-16 117.9 8.7 116 36-218 2-120 (171)
128 cd00878 Arf_Arl Arf (ADP-ribos 99.3 2.1E-11 4.6E-16 113.5 11.5 105 134-252 42-153 (158)
129 cd04116 Rab9 Rab9 subfamily. 99.3 3.5E-11 7.6E-16 113.6 12.9 152 33-253 4-165 (170)
130 cd04132 Rho4_like Rho4-like su 99.3 2.7E-11 5.9E-16 116.4 12.0 158 36-259 2-167 (187)
131 PLN03071 GTP-binding nuclear p 99.3 1.6E-11 3.5E-16 121.3 10.6 158 33-258 12-171 (219)
132 cd01876 YihA_EngB The YihA (En 99.3 3E-11 6.5E-16 112.9 11.9 121 36-218 1-126 (170)
133 cd04115 Rab33B_Rab33A Rab33B/R 99.3 1.3E-11 2.9E-16 116.7 9.4 154 34-251 2-161 (170)
134 smart00178 SAR Sar1p-like memb 99.3 5.6E-11 1.2E-15 114.2 13.8 114 33-216 16-132 (184)
135 COG3596 Predicted GTPase [Gene 99.3 4E-11 8.7E-16 117.7 12.7 123 33-218 37-164 (296)
136 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 2.8E-11 6.1E-16 115.1 11.5 150 34-253 15-170 (174)
137 cd04128 Spg1 Spg1p. Spg1p (se 99.3 2.2E-11 4.8E-16 116.8 10.8 155 36-256 2-163 (182)
138 cd04137 RheB Rheb (Ras Homolog 99.3 3.3E-11 7.2E-16 114.9 11.9 156 36-258 3-162 (180)
139 cd04146 RERG_RasL11_like RERG/ 99.3 2E-11 4.2E-16 114.8 10.0 107 135-254 47-159 (165)
140 cd04147 Ras_dva Ras-dva subfam 99.3 3.9E-11 8.5E-16 116.7 11.8 109 135-257 47-161 (198)
141 cd00879 Sar1 Sar1 subfamily. 99.3 8.3E-11 1.8E-15 113.3 13.9 152 33-254 18-186 (190)
142 KOG0078 GTP-binding protein SE 99.3 2.2E-11 4.7E-16 115.1 9.5 163 31-258 9-173 (207)
143 cd00877 Ran Ran (Ras-related n 99.2 2.4E-11 5.1E-16 114.7 9.6 107 135-258 49-158 (166)
144 smart00174 RHO Rho (Ras homolo 99.2 2.1E-11 4.5E-16 115.6 9.2 69 135-217 46-117 (174)
145 cd04150 Arf1_5_like Arf1-Arf5- 99.2 3.1E-11 6.7E-16 113.1 10.1 104 134-252 43-154 (159)
146 cd01891 TypA_BipA TypA (tyrosi 99.2 6.2E-11 1.3E-15 114.8 12.1 69 134-217 64-132 (194)
147 cd01874 Cdc42 Cdc42 subfamily. 99.2 4.9E-11 1.1E-15 113.6 11.1 116 35-217 2-120 (175)
148 smart00177 ARF ARF-like small 99.2 5.7E-11 1.2E-15 113.1 11.4 106 135-254 57-169 (175)
149 cd04148 RGK RGK subfamily. Th 99.2 1.7E-10 3.6E-15 114.3 15.0 110 135-259 50-163 (221)
150 cd04126 Rab20 Rab20 subfamily. 99.2 8.3E-11 1.8E-15 116.0 12.8 111 36-216 2-114 (220)
151 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 8.5E-11 1.8E-15 110.7 12.3 113 36-218 1-115 (164)
152 KOG1954 Endocytosis/signaling 99.2 3.8E-11 8.3E-16 121.0 9.9 168 33-218 57-227 (532)
153 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.2 1E-10 2.2E-15 116.2 12.7 123 27-216 6-131 (232)
154 cd01853 Toc34_like Toc34-like 99.2 1.8E-10 3.9E-15 115.5 14.5 129 33-219 30-166 (249)
155 PTZ00133 ADP-ribosylation fact 99.2 1.5E-10 3.2E-15 111.1 13.1 106 135-255 61-174 (182)
156 cd01892 Miro2 Miro2 subfamily. 99.2 9.3E-11 2E-15 111.0 11.4 153 33-254 3-161 (169)
157 PF04548 AIG1: AIG1 family; I 99.2 5.6E-11 1.2E-15 116.8 9.9 132 36-226 2-139 (212)
158 PLN00223 ADP-ribosylation fact 99.2 1.6E-10 3.5E-15 110.7 12.8 151 34-256 17-175 (181)
159 cd04155 Arl3 Arl3 subfamily. 99.2 9.5E-11 2.1E-15 110.9 11.0 150 33-253 13-169 (173)
160 TIGR00991 3a0901s02IAP34 GTP-b 99.2 2.7E-10 5.9E-15 115.9 14.8 125 32-217 36-168 (313)
161 cd04165 GTPBP1_like GTPBP1-lik 99.2 5E-11 1.1E-15 118.0 9.0 75 130-218 79-154 (224)
162 KOG0092 GTPase Rab5/YPT51 and 99.2 1.9E-11 4.2E-16 113.4 5.3 158 34-261 5-169 (200)
163 cd04143 Rhes_like Rhes_like su 99.2 2.1E-10 4.5E-15 115.4 13.1 154 36-256 2-168 (247)
164 cd04166 CysN_ATPS CysN_ATPS su 99.2 9.1E-11 2E-15 115.0 10.3 83 119-217 62-145 (208)
165 cd04133 Rop_like Rop subfamily 99.2 1.1E-10 2.3E-15 111.4 10.5 153 36-255 3-169 (176)
166 TIGR00491 aIF-2 translation in 99.2 2.4E-10 5.3E-15 127.4 14.9 133 33-216 3-135 (590)
167 PRK09602 translation-associate 99.2 4.3E-10 9.2E-15 120.1 16.2 39 35-73 2-40 (396)
168 TIGR00231 small_GTP small GTP- 99.2 2.2E-10 4.7E-15 105.3 12.2 29 35-64 2-30 (161)
169 TIGR00437 feoB ferrous iron tr 99.2 5.5E-11 1.2E-15 133.4 9.8 110 135-256 41-152 (591)
170 TIGR00487 IF-2 translation ini 99.2 1.9E-10 4.1E-15 128.6 13.8 117 32-216 85-201 (587)
171 cd01896 DRG The developmentall 99.2 1.9E-10 4.1E-15 114.7 12.3 24 36-59 2-25 (233)
172 PF00009 GTP_EFTU: Elongation 99.2 3.1E-11 6.8E-16 116.4 6.5 69 132-215 67-135 (188)
173 cd04134 Rho3 Rho3 subfamily. 99.2 1E-10 2.3E-15 112.8 9.9 154 36-256 2-171 (189)
174 cd01889 SelB_euk SelB subfamil 99.2 1.6E-10 3.5E-15 111.7 11.2 105 134-255 67-182 (192)
175 cd01871 Rac1_like Rac1-like su 99.2 1.6E-10 3.5E-15 109.9 10.8 115 36-217 3-120 (174)
176 PF00071 Ras: Ras family; Int 99.2 1.2E-10 2.6E-15 108.9 9.4 154 36-254 1-156 (162)
177 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 2.1E-10 4.6E-15 110.0 10.7 116 34-216 5-123 (182)
178 cd04131 Rnd Rnd subfamily. Th 99.1 1.9E-10 4.1E-15 110.0 10.2 114 36-216 3-119 (178)
179 cd04130 Wrch_1 Wrch-1 subfamil 99.1 1.5E-10 3.2E-15 109.9 9.4 115 36-217 2-119 (173)
180 smart00176 RAN Ran (Ras-relate 99.1 1.5E-10 3.2E-15 112.7 9.5 109 135-259 44-154 (200)
181 cd04135 Tc10 TC10 subfamily. 99.1 1.7E-10 3.7E-15 109.2 9.7 115 36-217 2-119 (174)
182 CHL00189 infB translation init 99.1 2.1E-10 4.5E-15 130.1 11.8 121 32-217 242-362 (742)
183 KOG1489 Predicted GTP-binding 99.1 7.8E-11 1.7E-15 117.3 7.2 157 33-252 195-360 (366)
184 cd01870 RhoA_like RhoA-like su 99.1 3E-10 6.4E-15 107.7 11.0 116 35-217 2-120 (175)
185 cd00882 Ras_like_GTPase Ras-li 99.1 2.8E-10 6E-15 103.4 10.0 103 134-250 44-151 (157)
186 PRK05306 infB translation init 99.1 3.3E-10 7.2E-15 129.6 12.8 116 32-216 288-403 (787)
187 TIGR00475 selB selenocysteine- 99.1 2.1E-10 4.6E-15 128.6 11.1 109 135-258 50-165 (581)
188 cd01875 RhoG RhoG subfamily. 99.1 4.2E-10 9E-15 108.8 11.3 155 35-256 4-174 (191)
189 cd01884 EF_Tu EF-Tu subfamily. 99.1 1.7E-10 3.6E-15 111.8 8.1 71 132-217 62-133 (195)
190 cd01899 Ygr210 Ygr210 subfamil 99.1 7.6E-10 1.6E-14 114.8 13.2 110 37-182 1-110 (318)
191 PF05049 IIGP: Interferon-indu 99.1 3.5E-10 7.7E-15 118.1 10.5 133 3-214 16-153 (376)
192 cd04102 RabL3 RabL3 (Rab-like3 99.1 1.4E-09 3E-14 105.9 13.1 70 135-217 54-144 (202)
193 cd01850 CDC_Septin CDC/Septin. 99.1 1.2E-09 2.6E-14 111.5 12.8 136 36-217 6-158 (276)
194 KOG0448 Mitofusin 1 GTPase, in 99.1 7.5E-09 1.6E-13 112.5 19.2 169 33-223 108-282 (749)
195 cd01886 EF-G Elongation factor 99.1 6.6E-10 1.4E-14 113.0 10.6 68 134-216 63-130 (270)
196 cd01888 eIF2_gamma eIF2-gamma 99.1 1.2E-09 2.5E-14 106.8 11.6 107 135-256 83-196 (203)
197 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.0 1.2E-09 2.7E-14 107.8 11.3 115 36-217 3-120 (222)
198 cd04105 SR_beta Signal recogni 99.0 1.9E-09 4.1E-14 105.3 12.3 117 35-218 1-125 (203)
199 cd04168 TetM_like Tet(M)-like 99.0 1.3E-09 2.8E-14 108.9 11.3 68 134-216 63-130 (237)
200 TIGR01393 lepA GTP-binding pro 99.0 1.4E-09 3E-14 122.2 12.4 168 34-255 3-176 (595)
201 cd01873 RhoBTB RhoBTB subfamil 99.0 1.1E-09 2.3E-14 106.3 10.0 66 135-216 66-134 (195)
202 PRK10512 selenocysteinyl-tRNA- 99.0 9.4E-10 2E-14 123.9 10.6 112 132-258 48-165 (614)
203 KOG1490 GTP-binding protein CR 99.0 7.6E-10 1.6E-14 116.0 8.9 155 5-218 138-297 (620)
204 COG1163 DRG Predicted GTPase [ 99.0 1.2E-09 2.7E-14 109.3 9.4 88 34-181 63-150 (365)
205 cd01885 EF2 EF2 (for archaea a 99.0 2.5E-09 5.4E-14 105.5 11.2 67 134-215 72-138 (222)
206 cd04169 RF3 RF3 subfamily. Pe 99.0 3.8E-09 8.1E-14 107.4 12.6 136 35-217 3-138 (267)
207 COG1100 GTPase SAR1 and relate 99.0 3.8E-09 8.3E-14 104.0 12.3 118 35-219 6-128 (219)
208 PRK04004 translation initiatio 99.0 4.6E-09 1E-13 117.7 13.9 67 135-216 71-137 (586)
209 COG0536 Obg Predicted GTPase [ 99.0 1E-09 2.2E-14 110.9 7.5 127 34-219 159-292 (369)
210 cd04129 Rho2 Rho2 subfamily. 99.0 2.6E-09 5.6E-14 102.8 10.0 107 135-255 49-169 (187)
211 KOG0093 GTPase Rab3, small G p 99.0 2.5E-09 5.4E-14 94.6 8.8 121 34-219 21-143 (193)
212 cd04167 Snu114p Snu114p subfam 99.0 3.6E-09 7.9E-14 104.1 10.9 133 36-215 2-136 (213)
213 KOG0098 GTPase Rab2, small G p 99.0 2.2E-09 4.8E-14 99.0 8.6 153 32-249 4-158 (216)
214 KOG0095 GTPase Rab30, small G 99.0 1.7E-09 3.7E-14 95.7 7.5 121 33-218 6-128 (213)
215 PF00025 Arf: ADP-ribosylation 99.0 1.9E-09 4.1E-14 102.7 8.4 151 33-254 13-171 (175)
216 PRK05433 GTP-binding protein L 98.9 5.8E-09 1.3E-13 117.4 13.4 170 33-256 6-181 (600)
217 TIGR00993 3a0901s04IAP86 chlor 98.9 6E-09 1.3E-13 114.2 12.9 125 35-217 119-251 (763)
218 PRK12317 elongation factor 1-a 98.9 6.3E-09 1.4E-13 113.2 12.9 142 34-216 6-153 (425)
219 cd04170 EF-G_bact Elongation f 98.9 6.2E-09 1.3E-13 106.2 11.7 69 134-217 63-131 (268)
220 cd04103 Centaurin_gamma Centau 98.9 6.8E-09 1.5E-13 97.1 10.6 102 135-254 47-154 (158)
221 KOG0091 GTPase Rab39, small G 98.9 2.3E-09 5E-14 96.5 6.7 158 35-256 9-170 (213)
222 TIGR00484 EF-G translation elo 98.9 9.9E-09 2.2E-13 118.1 13.5 134 33-217 9-142 (689)
223 cd01883 EF1_alpha Eukaryotic e 98.9 3E-09 6.5E-14 105.1 7.6 83 119-216 62-151 (219)
224 CHL00071 tufA elongation facto 98.9 4.8E-09 1E-13 113.4 8.8 71 133-218 73-144 (409)
225 cd01900 YchF YchF subfamily. 98.8 9.8E-09 2.1E-13 104.0 9.4 39 37-75 1-39 (274)
226 PF08477 Miro: Miro-like prote 98.8 5.1E-09 1.1E-13 92.6 6.6 24 36-59 1-24 (119)
227 PTZ00258 GTP-binding protein; 98.8 1.4E-08 3.1E-13 107.4 10.9 103 33-181 20-125 (390)
228 PLN00023 GTP-binding protein; 98.8 1.7E-08 3.6E-13 103.6 10.6 70 135-217 83-166 (334)
229 KOG0080 GTPase Rab18, small G 98.8 4.8E-09 1E-13 94.2 5.7 153 33-254 10-169 (209)
230 TIGR02034 CysN sulfate adenyly 98.8 1.2E-08 2.5E-13 110.2 10.0 101 133-249 78-187 (406)
231 KOG0394 Ras-related GTPase [Ge 98.8 9.6E-09 2.1E-13 94.7 6.8 160 33-257 8-176 (210)
232 PRK00007 elongation factor G; 98.8 2.1E-08 4.6E-13 115.3 11.0 135 33-218 9-143 (693)
233 PRK09601 GTP-binding protein Y 98.8 3.5E-08 7.6E-13 103.2 10.9 101 35-181 3-106 (364)
234 KOG2486 Predicted GTPase [Gene 98.8 2.9E-08 6.2E-13 97.6 9.4 162 32-251 134-308 (320)
235 PRK12739 elongation factor G; 98.8 2.2E-08 4.8E-13 115.2 10.2 134 33-217 7-140 (691)
236 PTZ00132 GTP-binding nuclear p 98.8 5.6E-08 1.2E-12 95.7 11.7 105 135-256 58-165 (215)
237 COG2229 Predicted GTPase [Gene 98.8 1.2E-07 2.6E-12 88.0 12.8 155 32-246 8-165 (187)
238 PLN03127 Elongation factor Tu; 98.8 2.3E-08 4.9E-13 108.8 9.4 131 34-217 61-192 (447)
239 PRK10218 GTP-binding protein; 98.8 4.9E-08 1.1E-12 109.5 12.2 131 33-217 4-135 (607)
240 TIGR03680 eif2g_arch translati 98.8 3E-08 6.5E-13 107.1 10.2 105 135-255 80-192 (406)
241 KOG0079 GTP-binding protein H- 98.8 4.9E-09 1.1E-13 92.8 3.3 121 32-218 6-128 (198)
242 KOG0075 GTP-binding ADP-ribosy 98.7 4.5E-08 9.7E-13 86.8 8.9 116 34-218 20-138 (186)
243 TIGR01394 TypA_BipA GTP-bindin 98.7 3.7E-08 8E-13 110.6 10.6 129 35-217 2-131 (594)
244 PRK05506 bifunctional sulfate 98.7 1.5E-08 3.4E-13 115.4 7.2 69 132-216 101-171 (632)
245 TIGR02836 spore_IV_A stage IV 98.7 9.5E-08 2.1E-12 99.7 12.1 143 35-215 18-193 (492)
246 PRK05124 cysN sulfate adenylyl 98.7 9.5E-08 2.1E-12 104.9 12.9 102 132-249 104-215 (474)
247 TIGR00485 EF-Tu translation el 98.7 2E-08 4.4E-13 108.1 7.0 131 34-217 12-143 (394)
248 TIGR00483 EF-1_alpha translati 98.7 7E-08 1.5E-12 105.1 11.1 102 133-249 83-197 (426)
249 PRK12735 elongation factor Tu; 98.7 5.1E-08 1.1E-12 105.0 9.9 70 133-217 73-143 (396)
250 PRK00741 prfC peptide chain re 98.7 1.4E-07 3E-12 104.6 13.3 138 33-217 9-146 (526)
251 COG4917 EutP Ethanolamine util 98.7 5.1E-08 1.1E-12 84.4 7.5 138 35-254 2-141 (148)
252 cd01882 BMS1 Bms1. Bms1 is an 98.7 4.8E-08 1E-12 96.9 8.4 69 132-218 80-149 (225)
253 TIGR00490 aEF-2 translation el 98.7 9.8E-08 2.1E-12 110.2 12.1 70 132-216 83-152 (720)
254 PRK00049 elongation factor Tu; 98.7 3.9E-08 8.3E-13 105.8 8.0 69 133-216 73-142 (396)
255 PRK12736 elongation factor Tu; 98.7 5.9E-08 1.3E-12 104.4 9.0 70 133-217 73-143 (394)
256 PF09439 SRPRB: Signal recogni 98.7 6.8E-08 1.5E-12 91.4 8.3 119 33-218 2-128 (181)
257 KOG0087 GTPase Rab11/YPT3, sma 98.7 8E-08 1.7E-12 90.8 8.6 121 31-216 11-133 (222)
258 PRK09435 membrane ATPase/prote 98.7 7.1E-08 1.5E-12 100.3 9.1 25 33-57 55-79 (332)
259 PLN03126 Elongation factor Tu; 98.7 7.1E-08 1.5E-12 105.6 9.3 131 34-217 81-212 (478)
260 KOG0073 GTP-binding ADP-ribosy 98.6 3.6E-07 7.8E-12 82.8 11.5 157 34-261 16-180 (185)
261 TIGR00503 prfC peptide chain r 98.6 1.2E-07 2.5E-12 105.2 10.3 137 33-216 10-146 (527)
262 KOG0097 GTPase Rab14, small G 98.6 1.3E-07 2.8E-12 83.0 7.6 152 31-247 8-161 (215)
263 PRK13351 elongation factor G; 98.6 1.5E-07 3.2E-12 108.6 10.3 134 33-217 7-140 (687)
264 KOG0086 GTPase Rab4, small G p 98.6 1.7E-07 3.7E-12 83.6 8.0 123 31-218 6-130 (214)
265 PRK04000 translation initiatio 98.6 2E-07 4.4E-12 100.7 10.3 24 34-57 9-32 (411)
266 PRK07560 elongation factor EF- 98.6 2.8E-07 6E-12 106.8 11.9 133 33-215 19-152 (731)
267 COG0532 InfB Translation initi 98.6 4.3E-07 9.4E-12 97.4 12.0 156 33-256 4-167 (509)
268 PTZ00416 elongation factor 2; 98.5 3E-07 6.6E-12 107.6 10.9 65 136-215 93-157 (836)
269 cd01858 NGP_1 NGP-1. Autoanti 98.5 2.8E-07 6.1E-12 86.1 8.6 27 35-61 103-129 (157)
270 PTZ00327 eukaryotic translatio 98.5 4.1E-07 8.9E-12 99.0 10.7 66 136-217 118-186 (460)
271 KOG0410 Predicted GTP binding 98.5 1.5E-07 3.3E-12 94.2 6.7 157 31-255 175-337 (410)
272 PF00735 Septin: Septin; Inte 98.5 3.4E-07 7.4E-12 93.6 9.3 138 36-218 6-158 (281)
273 cd04178 Nucleostemin_like Nucl 98.5 4.3E-07 9.4E-12 86.1 8.2 29 34-62 117-145 (172)
274 PLN00116 translation elongatio 98.5 5E-07 1.1E-11 106.0 10.4 66 135-215 98-163 (843)
275 cd01855 YqeH YqeH. YqeH is an 98.4 5.4E-07 1.2E-11 86.9 8.1 25 35-59 128-152 (190)
276 KOG0081 GTPase Rab27, small G 98.4 7.2E-08 1.6E-12 86.5 1.6 161 33-255 8-177 (219)
277 cd01849 YlqF_related_GTPase Yl 98.4 2.9E-07 6.4E-12 85.8 5.6 39 33-71 99-138 (155)
278 KOG0070 GTP-binding ADP-ribosy 98.4 7.3E-07 1.6E-11 82.9 8.0 152 34-256 17-175 (181)
279 KOG0395 Ras-related GTPase [Ge 98.4 1.3E-06 2.7E-11 84.7 9.1 153 33-252 2-158 (196)
280 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 5.9E-07 1.3E-11 82.3 6.4 25 35-59 84-108 (141)
281 PLN00043 elongation factor 1-a 98.4 1.6E-06 3.5E-11 94.5 10.6 71 132-215 82-158 (447)
282 KOG1145 Mitochondrial translat 98.3 4.3E-06 9.3E-11 89.2 12.3 115 33-215 152-266 (683)
283 PRK12740 elongation factor G; 98.3 2.6E-06 5.6E-11 98.2 10.8 69 134-217 59-127 (668)
284 PTZ00141 elongation factor 1- 98.3 2.4E-06 5.2E-11 93.2 9.6 69 132-214 82-157 (446)
285 PTZ00099 rab6; Provisional 98.3 1.6E-06 3.4E-11 82.7 7.0 117 134-264 28-147 (176)
286 KOG1707 Predicted Ras related/ 98.2 3.3E-06 7.1E-11 91.0 9.2 121 33-220 8-133 (625)
287 COG1161 Predicted GTPases [Gen 98.2 1.6E-06 3.5E-11 90.4 6.9 36 35-75 133-168 (322)
288 cd01856 YlqF YlqF. Proteins o 98.2 4E-06 8.7E-11 79.4 8.9 27 33-59 114-140 (171)
289 TIGR00750 lao LAO/AO transport 98.2 2.5E-05 5.4E-10 81.0 15.0 102 134-257 126-236 (300)
290 TIGR03596 GTPase_YlqF ribosome 98.2 4E-06 8.6E-11 85.9 8.8 29 34-62 118-146 (276)
291 COG0012 Predicted GTPase, prob 98.2 3E-06 6.5E-11 87.7 7.8 105 35-181 3-107 (372)
292 KOG3883 Ras family small GTPas 98.2 1.7E-05 3.6E-10 71.2 11.3 94 135-242 60-158 (198)
293 COG0480 FusA Translation elong 98.2 4.5E-06 9.7E-11 94.6 9.6 136 33-218 9-144 (697)
294 cd01851 GBP Guanylate-binding 98.2 5E-06 1.1E-10 82.4 7.7 32 33-65 6-39 (224)
295 KOG1532 GTPase XAB1, interacts 98.1 1.6E-05 3.5E-10 78.2 10.5 152 33-218 18-197 (366)
296 COG5256 TEF1 Translation elong 98.1 2.5E-05 5.4E-10 81.5 12.3 68 134-217 84-160 (428)
297 PRK09563 rbgA GTPase YlqF; Rev 98.1 3.7E-06 8.1E-11 86.6 6.3 26 34-59 121-146 (287)
298 TIGR00092 GTP-binding protein 98.1 1E-05 2.2E-10 84.9 9.4 104 35-181 3-107 (368)
299 TIGR01425 SRP54_euk signal rec 98.1 7.1E-05 1.5E-09 80.4 15.4 80 135-225 183-262 (429)
300 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 1.3E-05 2.8E-10 79.3 9.1 120 36-218 1-127 (232)
301 KOG4252 GTP-binding protein [S 98.1 9.1E-07 2E-11 81.1 0.8 68 136-218 70-140 (246)
302 KOG0090 Signal recognition par 98.1 9.4E-06 2E-10 77.2 7.5 116 34-219 38-162 (238)
303 PRK12289 GTPase RsgA; Reviewed 98.1 7E-06 1.5E-10 86.4 7.5 24 36-59 174-197 (352)
304 KOG1491 Predicted GTP-binding 98.1 6E-06 1.3E-10 83.6 6.6 103 33-181 19-124 (391)
305 PRK13768 GTPase; Provisional 98.1 2.4E-05 5.2E-10 79.0 11.0 75 135-218 97-178 (253)
306 TIGR00157 ribosome small subun 98.1 1.2E-05 2.7E-10 80.7 8.3 25 35-59 121-145 (245)
307 COG5019 CDC3 Septin family pro 98.0 2.8E-05 6.1E-10 80.0 10.6 82 135-218 82-178 (373)
308 TIGR03597 GTPase_YqeH ribosome 98.0 8.1E-06 1.8E-10 86.7 6.8 24 35-58 155-178 (360)
309 PRK12288 GTPase RsgA; Reviewed 98.0 1.6E-05 3.5E-10 83.7 8.8 24 36-59 207-230 (347)
310 PRK13796 GTPase YqeH; Provisio 98.0 5.6E-06 1.2E-10 88.1 5.2 24 35-58 161-184 (365)
311 PRK11889 flhF flagellar biosyn 98.0 3.3E-05 7.2E-10 81.2 10.5 153 34-226 241-401 (436)
312 KOG0088 GTPase Rab21, small G 98.0 3.9E-06 8.4E-11 75.5 3.1 119 34-218 13-134 (218)
313 cd01859 MJ1464 MJ1464. This f 98.0 3.1E-05 6.8E-10 72.0 9.1 27 33-59 100-126 (156)
314 PRK14845 translation initiatio 98.0 3.9E-05 8.4E-10 90.5 11.3 68 134-216 525-592 (1049)
315 KOG2655 Septin family protein 98.0 4.2E-05 9.2E-10 79.3 10.2 83 135-219 79-175 (366)
316 KOG0076 GTP-binding ADP-ribosy 97.9 1.3E-05 2.8E-10 73.6 5.2 111 134-257 68-185 (197)
317 KOG0071 GTP-binding ADP-ribosy 97.9 6.1E-05 1.3E-09 66.7 9.1 150 34-255 17-174 (180)
318 KOG1486 GTP-binding protein DR 97.9 9E-06 2E-10 78.8 4.3 25 34-58 62-86 (364)
319 PF00448 SRP54: SRP54-type pro 97.9 1.5E-05 3.2E-10 77.3 5.8 81 135-226 84-164 (196)
320 PRK14974 cell division protein 97.9 3.8E-05 8.2E-10 80.3 9.2 81 135-226 223-303 (336)
321 KOG0462 Elongation factor-type 97.9 5.3E-05 1.1E-09 81.2 9.5 135 33-218 59-193 (650)
322 PF03193 DUF258: Protein of un 97.9 1.4E-05 3E-10 74.3 4.4 25 35-59 36-60 (161)
323 PRK12726 flagellar biosynthesi 97.9 0.00021 4.6E-09 75.0 13.6 151 34-226 206-366 (407)
324 cd03112 CobW_like The function 97.9 7.1E-05 1.5E-09 70.0 9.0 23 35-57 1-23 (158)
325 KOG0393 Ras-related small GTPa 97.8 1.5E-05 3.3E-10 76.0 4.0 118 34-217 4-124 (198)
326 KOG0468 U5 snRNP-specific prot 97.8 0.00011 2.4E-09 80.1 10.8 134 33-215 127-262 (971)
327 KOG1547 Septin CDC10 and relat 97.8 8.2E-05 1.8E-09 71.9 8.8 80 135-216 104-198 (336)
328 PRK06731 flhF flagellar biosyn 97.8 6.9E-05 1.5E-09 76.0 8.6 154 33-226 74-235 (270)
329 PRK14722 flhF flagellar biosyn 97.8 0.00014 3E-09 77.0 10.9 24 34-57 137-160 (374)
330 KOG1424 Predicted GTP-binding 97.8 1.6E-05 3.5E-10 84.6 3.9 34 33-71 313-346 (562)
331 PRK14723 flhF flagellar biosyn 97.8 7E-05 1.5E-09 85.4 9.1 151 36-226 187-347 (767)
332 PF03029 ATP_bind_1: Conserved 97.8 3.2E-05 7E-10 77.2 5.5 37 39-81 1-37 (238)
333 PRK00098 GTPase RsgA; Reviewed 97.8 0.00012 2.6E-09 75.8 9.8 25 35-59 165-189 (298)
334 KOG0083 GTPase Rab26/Rab37, sm 97.8 4.7E-06 1E-10 72.8 -0.6 102 134-252 46-153 (192)
335 COG1217 TypA Predicted membran 97.7 8.4E-05 1.8E-09 78.2 7.9 134 33-219 4-137 (603)
336 PRK10416 signal recognition pa 97.7 0.00012 2.5E-09 76.3 9.0 84 134-226 196-283 (318)
337 cd01854 YjeQ_engC YjeQ/EngC. 97.7 9.1E-05 2E-09 76.3 7.8 25 35-59 162-186 (287)
338 cd03114 ArgK-like The function 97.7 0.00032 6.9E-09 64.8 10.6 22 36-57 1-22 (148)
339 PRK14721 flhF flagellar biosyn 97.7 0.00057 1.2E-08 73.5 13.8 157 34-226 191-350 (420)
340 COG1162 Predicted GTPases [Gen 97.7 9.3E-05 2E-09 75.1 7.1 24 34-57 164-187 (301)
341 PRK05703 flhF flagellar biosyn 97.6 0.00043 9.4E-09 75.0 12.2 82 135-226 300-381 (424)
342 COG0481 LepA Membrane GTPase L 97.6 0.00019 4E-09 75.9 8.9 173 33-257 8-184 (603)
343 KOG1143 Predicted translation 97.6 6.2E-05 1.3E-09 76.9 5.0 145 36-219 169-320 (591)
344 PRK12724 flagellar biosynthesi 97.6 0.00039 8.5E-09 74.2 11.1 84 134-226 299-383 (432)
345 PRK12727 flagellar biosynthesi 97.6 0.0004 8.6E-09 76.0 11.3 80 135-226 429-508 (559)
346 TIGR00073 hypB hydrogenase acc 97.6 0.00016 3.4E-09 70.8 7.6 25 33-57 21-45 (207)
347 KOG0072 GTP-binding ADP-ribosy 97.6 0.00013 2.9E-09 64.9 6.2 110 133-257 60-177 (182)
348 PRK12723 flagellar biosynthesi 97.5 0.00066 1.4E-08 72.4 11.9 151 35-226 175-336 (388)
349 TIGR00101 ureG urease accessor 97.5 0.0006 1.3E-08 66.3 10.4 48 206-255 141-192 (199)
350 KOG1144 Translation initiation 97.5 0.00051 1.1E-08 75.9 10.4 133 32-215 473-605 (1064)
351 KOG2485 Conserved ATP/GTP bind 97.5 0.0001 2.2E-09 74.3 4.6 26 33-58 142-167 (335)
352 COG3276 SelB Selenocysteine-sp 97.5 0.00037 8.1E-09 73.4 8.9 107 136-258 51-161 (447)
353 KOG2203 GTP-binding protein [G 97.5 0.096 2.1E-06 56.8 26.3 29 31-59 34-62 (772)
354 COG4108 PrfC Peptide chain rel 97.5 0.00042 9E-09 72.7 8.7 137 33-218 11-149 (528)
355 TIGR00064 ftsY signal recognit 97.5 0.0016 3.5E-08 66.4 13.0 83 135-226 155-241 (272)
356 KOG0458 Elongation factor 1 al 97.4 0.00049 1.1E-08 74.6 9.3 115 118-249 239-372 (603)
357 KOG0074 GTP-binding ADP-ribosy 97.4 0.0005 1.1E-08 61.1 7.7 116 34-218 17-135 (185)
358 PRK10867 signal recognition pa 97.4 0.00085 1.8E-08 72.6 10.8 80 135-225 184-263 (433)
359 PRK00771 signal recognition pa 97.4 0.00099 2.1E-08 72.2 10.9 80 136-226 177-256 (437)
360 PF03308 ArgK: ArgK protein; 97.4 7.5E-05 1.6E-09 74.0 1.9 25 33-57 28-52 (266)
361 COG1419 FlhF Flagellar GTP-bin 97.4 0.002 4.4E-08 67.9 12.5 155 34-226 203-362 (407)
362 cd03115 SRP The signal recogni 97.4 0.0012 2.6E-08 62.5 10.0 80 135-225 83-162 (173)
363 COG1703 ArgK Putative periplas 97.4 0.0045 9.7E-08 62.5 14.1 25 33-57 50-74 (323)
364 COG3640 CooC CO dehydrogenase 97.3 0.0046 1E-07 60.3 13.0 87 135-245 134-222 (255)
365 TIGR03348 VI_IcmF type VI secr 97.3 0.0012 2.7E-08 80.5 11.0 56 4-63 83-138 (1169)
366 COG0050 TufB GTPases - transla 97.2 0.0013 2.9E-08 65.6 8.9 131 35-218 13-144 (394)
367 KOG2484 GTPase [General functi 97.2 0.00048 1E-08 71.6 5.4 32 33-64 251-282 (435)
368 TIGR00959 ffh signal recogniti 97.2 0.0023 5E-08 69.2 10.9 81 135-226 183-263 (428)
369 PF05879 RHD3: Root hair defec 97.2 0.49 1.1E-05 55.1 30.2 23 40-63 1-23 (742)
370 COG5257 GCD11 Translation init 97.1 0.0014 3E-08 66.3 8.0 44 36-81 12-55 (415)
371 KOG0077 Vesicle coat complex C 97.1 0.0022 4.8E-08 58.8 8.4 129 11-219 7-138 (193)
372 PRK06995 flhF flagellar biosyn 97.1 0.0041 8.8E-08 68.1 11.5 91 136-239 336-426 (484)
373 COG5192 BMS1 GTP-binding prote 97.1 0.0019 4.1E-08 69.3 8.4 71 131-219 109-180 (1077)
374 KOG1487 GTP-binding protein DR 97.0 0.00082 1.8E-08 65.9 4.5 31 34-65 59-89 (358)
375 KOG0467 Translation elongation 96.9 0.0017 3.7E-08 72.3 6.7 129 33-214 8-136 (887)
376 KOG0461 Selenocysteine-specifi 96.8 0.0056 1.2E-07 62.4 8.8 65 135-219 70-139 (522)
377 PRK10463 hydrogenase nickel in 96.7 0.00092 2E-08 68.1 2.6 25 33-57 103-127 (290)
378 COG0541 Ffh Signal recognition 96.6 0.059 1.3E-06 57.3 15.3 79 135-224 183-261 (451)
379 COG2895 CysN GTPases - Sulfate 96.5 0.018 4E-07 59.2 10.0 143 33-220 5-157 (431)
380 cd01859 MJ1464 MJ1464. This f 96.4 0.0064 1.4E-07 56.4 5.8 93 161-257 2-94 (156)
381 PRK01889 GTPase RsgA; Reviewed 96.3 0.0071 1.5E-07 64.2 6.6 24 36-59 197-220 (356)
382 KOG3859 Septins (P-loop GTPase 96.3 0.017 3.8E-07 57.3 8.2 134 35-218 43-192 (406)
383 KOG0464 Elongation factor G [T 96.2 0.021 4.6E-07 59.5 8.8 136 32-218 35-170 (753)
384 cd01855 YqeH YqeH. YqeH is an 96.2 0.029 6.2E-07 53.9 9.5 117 161-288 24-149 (190)
385 KOG4181 Uncharacterized conser 96.1 0.37 8.1E-06 49.6 16.9 26 33-58 187-212 (491)
386 KOG1673 Ras GTPases [General f 95.8 0.0082 1.8E-07 54.4 3.3 114 35-215 21-137 (205)
387 KOG0780 Signal recognition par 95.8 0.023 5E-07 59.1 6.8 78 133-221 182-259 (483)
388 COG1136 SalX ABC-type antimicr 95.7 0.0081 1.8E-07 59.0 3.4 29 36-66 33-61 (226)
389 TIGR00157 ribosome small subun 95.7 0.0063 1.4E-07 61.2 2.5 91 161-252 26-116 (245)
390 KOG2423 Nucleolar GTPase [Gene 95.7 0.024 5.2E-07 59.0 6.5 25 35-59 308-332 (572)
391 smart00010 small_GTPase Small 95.7 0.032 7E-07 48.8 6.7 24 36-59 2-25 (124)
392 PRK11537 putative GTP-binding 95.6 0.046 1E-06 57.1 8.7 25 33-57 3-27 (318)
393 COG3840 ThiQ ABC-type thiamine 95.6 0.01 2.2E-07 55.7 3.3 28 35-63 26-53 (231)
394 PRK13695 putative NTPase; Prov 95.6 0.036 7.8E-07 52.5 7.1 54 157-212 82-136 (174)
395 COG1341 Predicted GTPase or GT 95.5 0.041 8.9E-07 58.0 7.8 25 33-57 72-96 (398)
396 KOG2749 mRNA cleavage and poly 95.5 0.15 3.2E-06 52.7 11.4 41 33-79 102-142 (415)
397 KOG3886 GTP-binding protein [S 95.3 0.022 4.8E-07 55.3 4.7 76 135-219 53-133 (295)
398 KOG0463 GTP-binding protein GP 95.3 0.059 1.3E-06 55.7 8.0 24 35-58 134-157 (641)
399 PF13555 AAA_29: P-loop contai 95.3 0.018 3.8E-07 44.5 3.1 22 35-56 24-45 (62)
400 cd00071 GMPK Guanosine monopho 95.2 0.016 3.6E-07 52.6 3.4 21 37-57 2-22 (137)
401 PRK12289 GTPase RsgA; Reviewed 95.1 0.027 5.8E-07 59.6 4.8 89 162-252 80-168 (352)
402 COG1116 TauB ABC-type nitrate/ 95.0 0.02 4.3E-07 56.6 3.5 28 35-63 30-57 (248)
403 PF03205 MobB: Molybdopterin g 95.0 0.018 3.9E-07 52.6 2.9 23 35-57 1-23 (140)
404 PF13521 AAA_28: AAA domain; P 94.9 0.014 3.1E-07 54.5 2.2 22 36-57 1-22 (163)
405 cd01858 NGP_1 NGP-1. Autoanti 94.9 0.065 1.4E-06 49.7 6.4 51 166-218 3-55 (157)
406 PF00005 ABC_tran: ABC transpo 94.8 0.023 5E-07 51.2 3.2 24 35-58 12-35 (137)
407 cd01130 VirB11-like_ATPase Typ 94.8 0.023 5.1E-07 54.4 3.2 31 35-67 26-56 (186)
408 TIGR03263 guanyl_kin guanylate 94.7 0.029 6.2E-07 53.3 3.7 22 36-57 3-24 (180)
409 COG4107 PhnK ABC-type phosphon 94.7 0.026 5.6E-07 52.5 3.2 32 35-68 33-64 (258)
410 COG1101 PhnK ABC-type uncharac 94.7 0.024 5.3E-07 54.7 3.1 23 35-57 33-55 (263)
411 COG0552 FtsY Signal recognitio 94.7 0.17 3.6E-06 52.3 9.2 82 135-225 222-307 (340)
412 PRK01889 GTPase RsgA; Reviewed 94.7 0.03 6.5E-07 59.5 4.0 79 169-250 110-188 (356)
413 KOG1534 Putative transcription 94.7 0.11 2.3E-06 50.0 7.2 21 36-56 5-25 (273)
414 TIGR03499 FlhF flagellar biosy 94.7 0.055 1.2E-06 55.6 5.8 23 35-57 195-217 (282)
415 KOG0460 Mitochondrial translat 94.6 0.12 2.6E-06 53.1 7.9 129 36-218 56-186 (449)
416 KOG0096 GTPase Ran/TC4/GSP1 (n 94.6 0.11 2.3E-06 49.1 6.9 105 135-255 59-165 (216)
417 PRK00300 gmk guanylate kinase; 94.4 0.032 7E-07 54.2 3.3 37 35-71 6-43 (205)
418 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.4 0.037 7.9E-07 50.8 3.3 23 36-58 28-50 (144)
419 COG0194 Gmk Guanylate kinase [ 94.4 0.029 6.3E-07 53.0 2.7 36 36-71 6-41 (191)
420 KOG1533 Predicted GTPase [Gene 94.4 0.087 1.9E-06 51.4 5.9 20 37-56 5-24 (290)
421 cd03225 ABC_cobalt_CbiO_domain 94.3 0.04 8.6E-07 53.8 3.7 29 36-66 29-57 (211)
422 cd03261 ABC_Org_Solvent_Resist 94.3 0.038 8.2E-07 55.0 3.6 23 36-58 28-50 (235)
423 TIGR01360 aden_kin_iso1 adenyl 94.3 0.034 7.5E-07 52.9 3.1 23 33-55 2-24 (188)
424 cd03264 ABC_drug_resistance_li 94.2 0.039 8.4E-07 53.9 3.4 29 35-65 26-54 (211)
425 PRK14737 gmk guanylate kinase; 94.2 0.046 1E-06 52.5 3.8 38 34-71 4-42 (186)
426 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.2 0.041 8.8E-07 54.0 3.6 28 36-65 32-59 (218)
427 TIGR01166 cbiO cobalt transpor 94.2 0.044 9.5E-07 52.6 3.6 23 36-58 20-42 (190)
428 cd01849 YlqF_related_GTPase Yl 94.1 0.1 2.3E-06 48.2 5.9 43 173-217 1-44 (155)
429 cd03224 ABC_TM1139_LivF_branch 94.1 0.047 1E-06 53.8 3.7 23 36-58 28-50 (222)
430 cd03222 ABC_RNaseL_inhibitor T 94.1 0.046 9.9E-07 52.1 3.4 25 34-58 25-49 (177)
431 PRK13541 cytochrome c biogenes 94.0 0.048 1E-06 52.6 3.6 24 35-58 27-50 (195)
432 COG0410 LivF ABC-type branched 94.0 0.046 1E-06 53.4 3.4 23 35-57 30-52 (237)
433 cd03215 ABC_Carb_Monos_II This 94.0 0.05 1.1E-06 51.9 3.7 24 35-58 27-50 (182)
434 cd03263 ABC_subfamily_A The AB 94.0 0.045 9.8E-07 53.8 3.5 23 36-58 30-52 (220)
435 cd03265 ABC_DrrA DrrA is the A 94.0 0.048 1E-06 53.7 3.6 22 36-57 28-49 (220)
436 cd03218 ABC_YhbG The ABC trans 94.0 0.048 1E-06 54.1 3.7 23 36-58 28-50 (232)
437 cd03226 ABC_cobalt_CbiO_domain 94.0 0.048 1E-06 53.0 3.6 24 35-58 27-50 (205)
438 TIGR00960 3a0501s02 Type II (G 94.0 0.048 1E-06 53.5 3.6 24 35-58 30-53 (216)
439 TIGR02475 CobW cobalamin biosy 94.0 0.31 6.7E-06 51.5 9.8 25 33-57 3-27 (341)
440 TIGR02673 FtsE cell division A 94.0 0.051 1.1E-06 53.2 3.7 23 36-58 30-52 (214)
441 cd03269 ABC_putative_ATPase Th 94.0 0.05 1.1E-06 53.1 3.6 23 36-58 28-50 (210)
442 PRK13851 type IV secretion sys 93.9 0.043 9.4E-07 57.8 3.3 33 34-68 162-194 (344)
443 KOG0469 Elongation factor 2 [T 93.9 0.064 1.4E-06 57.4 4.5 65 136-215 99-163 (842)
444 cd03258 ABC_MetN_methionine_tr 93.9 0.052 1.1E-06 53.9 3.7 28 36-65 33-60 (233)
445 cd03259 ABC_Carb_Solutes_like 93.9 0.052 1.1E-06 53.1 3.6 23 36-58 28-50 (213)
446 COG4559 ABC-type hemin transpo 93.9 0.055 1.2E-06 52.2 3.5 32 35-68 28-59 (259)
447 cd03229 ABC_Class3 This class 93.9 0.056 1.2E-06 51.4 3.6 22 36-57 28-49 (178)
448 cd00267 ABC_ATPase ABC (ATP-bi 93.8 0.059 1.3E-06 50.0 3.6 32 35-68 26-57 (157)
449 PRK11629 lolD lipoprotein tran 93.8 0.053 1.2E-06 53.9 3.5 23 36-58 37-59 (233)
450 COG1120 FepC ABC-type cobalami 93.8 0.053 1.2E-06 54.4 3.5 28 36-65 30-57 (258)
451 cd03254 ABCC_Glucan_exporter_l 93.8 0.056 1.2E-06 53.5 3.7 29 36-66 31-59 (229)
452 cd03292 ABC_FtsE_transporter F 93.8 0.055 1.2E-06 52.9 3.6 23 36-58 29-51 (214)
453 cd03266 ABC_NatA_sodium_export 93.8 0.056 1.2E-06 53.0 3.6 23 36-58 33-55 (218)
454 TIGR02315 ABC_phnC phosphonate 93.8 0.055 1.2E-06 54.1 3.6 23 36-58 30-52 (243)
455 cd03231 ABC_CcmA_heme_exporter 93.7 0.06 1.3E-06 52.2 3.7 29 35-65 27-55 (201)
456 PRK13540 cytochrome c biogenes 93.7 0.059 1.3E-06 52.2 3.6 25 34-58 27-51 (200)
457 cd03216 ABC_Carb_Monos_I This 93.7 0.062 1.3E-06 50.3 3.6 25 34-58 26-50 (163)
458 cd03293 ABC_NrtD_SsuB_transpor 93.7 0.058 1.3E-06 53.1 3.6 23 36-58 32-54 (220)
459 cd03219 ABC_Mj1267_LivG_branch 93.7 0.057 1.2E-06 53.7 3.6 28 36-65 28-55 (236)
460 cd03262 ABC_HisP_GlnQ_permease 93.7 0.061 1.3E-06 52.6 3.7 28 36-65 28-55 (213)
461 cd03369 ABCC_NFT1 Domain 2 of 93.7 0.059 1.3E-06 52.5 3.6 31 35-67 35-65 (207)
462 PRK13543 cytochrome c biogenes 93.7 0.059 1.3E-06 52.9 3.6 29 36-66 39-67 (214)
463 TIGR03608 L_ocin_972_ABC putat 93.7 0.06 1.3E-06 52.3 3.6 23 36-58 26-48 (206)
464 COG0411 LivG ABC-type branched 93.7 0.019 4E-07 56.5 -0.1 23 36-58 32-54 (250)
465 PRK13651 cobalt transporter AT 93.6 0.059 1.3E-06 56.0 3.6 29 36-66 35-63 (305)
466 cd02038 FleN-like FleN is a me 93.6 0.14 3E-06 46.5 5.7 65 135-215 45-110 (139)
467 cd03256 ABC_PhnC_transporter A 93.6 0.061 1.3E-06 53.6 3.6 23 36-58 29-51 (241)
468 COG3523 IcmF Type VI protein s 93.6 0.2 4.2E-06 60.3 8.2 27 32-59 123-149 (1188)
469 cd03230 ABC_DR_subfamily_A Thi 93.6 0.067 1.5E-06 50.6 3.7 23 36-58 28-50 (173)
470 PRK10751 molybdopterin-guanine 93.6 0.05 1.1E-06 51.4 2.7 25 33-57 5-29 (173)
471 cd03257 ABC_NikE_OppD_transpor 93.6 0.065 1.4E-06 52.9 3.7 29 35-65 32-60 (228)
472 PRK14250 phosphate ABC transpo 93.6 0.065 1.4E-06 53.6 3.7 30 36-67 31-60 (241)
473 PRK15177 Vi polysaccharide exp 93.6 0.063 1.4E-06 52.7 3.5 32 35-68 14-45 (213)
474 PRK10895 lipopolysaccharide AB 93.6 0.065 1.4E-06 53.6 3.7 29 35-65 30-58 (241)
475 PRK00098 GTPase RsgA; Reviewed 93.6 0.078 1.7E-06 54.9 4.3 82 169-251 78-159 (298)
476 cd03236 ABC_RNaseL_inhibitor_d 93.6 0.065 1.4E-06 54.2 3.7 33 34-68 26-58 (255)
477 cd02019 NK Nucleoside/nucleoti 93.6 0.064 1.4E-06 42.4 2.9 21 37-57 2-22 (69)
478 cd03249 ABC_MTABC3_MDL1_MDL2 M 93.6 0.063 1.4E-06 53.5 3.5 30 35-66 30-59 (238)
479 PF13207 AAA_17: AAA domain; P 93.6 0.058 1.3E-06 47.4 2.9 22 36-57 1-22 (121)
480 cd03235 ABC_Metallic_Cations A 93.5 0.067 1.4E-06 52.3 3.6 23 36-58 27-49 (213)
481 TIGR02211 LolD_lipo_ex lipopro 93.5 0.068 1.5E-06 52.6 3.7 24 35-58 32-55 (221)
482 cd03301 ABC_MalK_N The N-termi 93.5 0.067 1.5E-06 52.3 3.6 23 36-58 28-50 (213)
483 cd03223 ABCD_peroxisomal_ALDP 93.5 0.074 1.6E-06 50.0 3.7 28 36-65 29-56 (166)
484 cd03253 ABCC_ATM1_transporter 93.5 0.067 1.5E-06 53.2 3.6 30 35-66 28-57 (236)
485 cd03268 ABC_BcrA_bacitracin_re 93.5 0.068 1.5E-06 52.1 3.6 24 35-58 27-50 (208)
486 PRK13539 cytochrome c biogenes 93.5 0.071 1.5E-06 52.0 3.7 24 35-58 29-52 (207)
487 PRK11124 artP arginine transpo 93.5 0.067 1.5E-06 53.5 3.6 24 35-58 29-52 (242)
488 cd03260 ABC_PstB_phosphate_tra 93.5 0.06 1.3E-06 53.2 3.2 24 35-58 27-50 (227)
489 COG4525 TauB ABC-type taurine 93.4 0.065 1.4E-06 51.0 3.2 23 35-57 32-54 (259)
490 COG4988 CydD ABC-type transpor 93.4 0.066 1.4E-06 58.9 3.7 29 35-65 348-376 (559)
491 TIGR03410 urea_trans_UrtE urea 93.4 0.072 1.6E-06 52.8 3.7 24 35-58 27-50 (230)
492 cd03280 ABC_MutS2 MutS2 homolo 93.4 0.85 1.9E-05 44.1 11.2 20 36-55 30-49 (200)
493 PRK15112 antimicrobial peptide 93.4 0.07 1.5E-06 54.3 3.7 29 36-66 41-69 (267)
494 cd03214 ABC_Iron-Siderophores_ 93.4 0.077 1.7E-06 50.5 3.7 29 35-65 26-54 (180)
495 PRK11248 tauB taurine transpor 93.4 0.072 1.6E-06 53.8 3.7 23 36-58 29-51 (255)
496 COG5258 GTPBP1 GTPase [General 93.4 0.13 2.7E-06 53.7 5.3 66 137-218 203-271 (527)
497 TIGR01978 sufC FeS assembly AT 93.4 0.076 1.7E-06 53.0 3.8 22 36-57 28-49 (243)
498 TIGR03864 PQQ_ABC_ATP ABC tran 93.4 0.071 1.5E-06 53.1 3.6 23 36-58 29-51 (236)
499 cd03246 ABCC_Protease_Secretio 93.4 0.074 1.6E-06 50.3 3.5 24 35-58 29-52 (173)
500 cd03232 ABC_PDR_domain2 The pl 93.4 0.078 1.7E-06 51.1 3.8 24 35-58 34-57 (192)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2.3e-98 Score=829.77 Aligned_cols=596 Identities=41% Similarity=0.589 Sum_probs=545.6
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecC
Q 007296 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ 80 (609)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (609)
|+.++|++|++||+|..+|.. .++.+|+|+|||+||+||||+||+++|.+|+|||.|+|||+|++++|.+..
T Consensus 4 ~~~li~~vn~lqd~~~~l~~~--------~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~ 75 (657)
T KOG0446|consen 4 MRLLIPLSNPLQDKLEILGSS--------SFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVA 75 (657)
T ss_pred hhhccccchHHHHHHHHhcCC--------CcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeeccccc
Confidence 789999999999999999932 246899999999999999999999999999999999999999999999987
Q ss_pred CC-ccchhhc-cCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchH
Q 007296 81 EG-KEYAEFM-HLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIV 158 (609)
Q Consensus 81 ~~-~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~ 158 (609)
.+ .+|++|. |.+...++||.+++++|+.+++++.|.++|+|+.+|.+++++|+++++|+||+||+++++.++||.++.
T Consensus 76 ~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~ 155 (657)
T KOG0446|consen 76 GGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIE 155 (657)
T ss_pred CCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHH
Confidence 76 8999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceee
Q 007296 159 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIG 238 (609)
Q Consensus 159 ~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 238 (609)
.++++|++.|+..+++|||+|++||.|+++++++++++++||.|.|||||+||+|++++|++..+.+.|..+++++||++
T Consensus 156 ~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~ 235 (657)
T KOG0446|consen 156 EEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVG 235 (657)
T ss_pred HHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q 007296 239 VVNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAELTR 318 (609)
Q Consensus 239 v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~ 318 (609)
|+||++++++...+..++...|..||.+++.|..+..++|+++|.+.|...|..||++++|.+...|+..+.+.++++.+
T Consensus 236 vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~el~~ 315 (657)
T KOG0446|consen 236 VVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQDELNR 315 (657)
T ss_pred eeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHHHHHHhhccCC--------CCCchhHhHHhhhhHHhhcccCccccCChhHHHHHHH
Q 007296 319 LGKPIANDAGGKLYTAMEISRAFDQIFKEHLDGVR--------PGGDKIYGVFDNQLPAGLKRLQFDKHLSMDNVRKLIT 390 (609)
Q Consensus 319 lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~--------~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~ 390 (609)
+|. ..+..+....++.+++.|+..+...+.|+. +||+|++++|++.|+..+.++++.+.+...+|++++.
T Consensus 316 ~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~~~i~ 393 (657)
T KOG0446|consen 316 IGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIEKLVS 393 (657)
T ss_pred hcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHHHHHH
Confidence 996 322223334567778888888888888762 4789999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHHHHHHHHHHH
Q 007296 391 EADGYQPHLIAPEQGYRRLIESCLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDE 470 (609)
Q Consensus 391 ~~~g~~p~~~~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~ 470 (609)
|++|++|++|.|+.+|+.++++||+.+++|+++||+.|++++.+++++++..+ +|.|||.|+.++..++.++++++.++
T Consensus 394 ~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~~~~~~~~~~~-~l~rfp~l~~~~~~~~~~~~~~~~~~ 472 (657)
T KOG0446|consen 394 EASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELVRIVADSIRAT-ELKRFPVLYSELVEIASSLIAEGLDE 472 (657)
T ss_pred hccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999998753 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccch---hhhccCchh---hhh----------------CCCCCCCCC-------------------
Q 007296 471 SRRATLQLVDMECCYLTV---EFFRKLPQD---AEK----------------GGNPTHSIF------------------- 509 (609)
Q Consensus 471 a~~~i~~li~~E~~y~~t---d~~~~~~~~---~~~----------------~~~~~~~~~------------------- 509 (609)
++++|.++|+||.+|+|| ||++...+. ... ...+.....
T Consensus 473 t~~~v~~~i~~e~~yinT~h~df~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (657)
T KOG0446|consen 473 TKKAVKNLIDLEQSYLNTDHPDFRSLTDSALSSVTSPSIAAMKLISAQLLKEELGECNSALKAIKNAVGSIRLDPSDIVL 552 (657)
T ss_pred HHHHHHHHHHHHHHHhcCcChhhhhhHHHHHHHhhcccccccccccccccccccccccchhhhhcchhhhhhhcccchhh
Confidence 999999999999999988 455432111 110 000100000
Q ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhhcCCCHHHH
Q 007296 510 ------DRYSDTYLRRIGSTVLSYVNMVCASLRHSIPKSVVYCQVREAKRSLLDYFFAELGK-KEIKQLSSLLDEDPAVM 582 (609)
Q Consensus 510 ------~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~lq~~l~~~L~~-~~~~~~~~ll~E~~~i~ 582 (609)
......+++.|..++.+||+||+++++|+|||+|||+||+.+++.||.+|+..||+ .+ .+++||+|+|.++
T Consensus 553 ~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~~~~--~~~~ll~E~~~i~ 630 (657)
T KOG0446|consen 553 SRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYAGDE--QLESLLKEDPRIK 630 (657)
T ss_pred hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHccCHHHH
Confidence 01112356789999999999999999999999999999999999999999999999 54 5999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCC
Q 007296 583 QRRTNLAKRLELYRSAQSEIEMVAWDK 609 (609)
Q Consensus 583 ~kR~~l~~~~~~L~~A~~~l~~~~~~~ 609 (609)
.+|+.|++|+.+|++|+.++..+.|++
T Consensus 631 ~~R~~~~~~l~~L~~a~~ii~~~~~~~ 657 (657)
T KOG0446|consen 631 RRRELQQKRLLALQKALSILATVAQAK 657 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999998864
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=3.8e-47 Score=375.04 Aligned_cols=239 Identities=63% Similarity=0.974 Sum_probs=224.5
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecC
Q 007296 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ 80 (609)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (609)
||.|++++|+||++++.+|... ++++|+|+|||+|||||||+||+|+|..++|++.|.|||||+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~--------~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~- 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEK--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS- 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC-
Confidence 8999999999999999999642 2589999999999999999999999999899999999999999999875
Q ss_pred CCccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHH
Q 007296 81 EGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQD 160 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~ 160 (609)
..+|+++.+.+++.+.+++++++.|+++++.+.|.+++||+++|.++|++|++++++||||||+...+..+++.++...
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~ 150 (240)
T smart00053 72 -STEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQ 150 (240)
T ss_pred -CCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHH
Confidence 3578889988889999999999999999999999899999999999999999999999999999987777777888999
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEe
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 240 (609)
+++++..|++++++|||+|++++.|+.+++++++++.+++.+.|||+|+||+|..++++++.++++|+.+++++||++|+
T Consensus 151 i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~v~ 230 (240)
T smart00053 151 IKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIGVV 230 (240)
T ss_pred HHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred eCChhhhcc
Q 007296 241 NRSQADINK 249 (609)
Q Consensus 241 ~~s~~~i~~ 249 (609)
|||+++++.
T Consensus 231 nr~~~d~~~ 239 (240)
T smart00053 231 NRSQKDIEG 239 (240)
T ss_pred CCChHHhhc
Confidence 999998864
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1.8e-46 Score=386.99 Aligned_cols=265 Identities=32% Similarity=0.518 Sum_probs=240.9
Q ss_pred HHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHH
Q 007296 222 VDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGL 301 (609)
Q Consensus 222 ~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l 301 (609)
.+++.|+.++|++||++|+|||+++++...++.+++..|..||.++|+|+...+++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 68899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCChhhhHHHHHHHHHHHHHHHHHhhccCCC---------CCchhHhHHhhhhHHhhc
Q 007296 302 QSLISKTISELEAELTRLGKPIANDAGGKLYTAMEISRAFDQIFKEHLDGVRP---------GGDKIYGVFDNQLPAGLK 372 (609)
Q Consensus 302 ~~~i~~~l~~~~~eL~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~---------~~~~i~~~f~~~~~~~~~ 372 (609)
+.+|+..+.+++.+|..||++++.+.+++..+|++++++|++.+.++++|.+. +|++|.++|++.|...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999999777778889999999999999999999986 479999999999999998
Q ss_pred ccCccccCChhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccCchhhH
Q 007296 373 RLQFDKHLSMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTL 452 (609)
Q Consensus 373 ~~~~~~~~~~~~i~~~i~~~~g~~p~~~~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L 452 (609)
+.++...++.++|+++|+++.|+++++|+|+.+|+.||+++|++|++||.+|++.|++++.+++.+++. .+|.+||+|
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~~i~~~~~~--~~~~~fp~L 239 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQRIVEQVLE--KEFERFPNL 239 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHC--HHHTTSHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcc--hhcCCchHH
Confidence 888888889999999999999999999999999999999999999999999999999999999999876 599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccch
Q 007296 453 RVEVGNAAIQSLERMRDESRRATLQLVDMECCYLTV 488 (609)
Q Consensus 453 ~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~~y~~t 488 (609)
++++.+++.++++++..+|+++|+++|+||++|+||
T Consensus 240 ~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T 275 (295)
T PF01031_consen 240 KEAIKEAVQQLLEECREPAKEMIENLIDMELSYINT 275 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999998
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=1e-31 Score=277.47 Aligned_cols=421 Identities=25% Similarity=0.354 Sum_probs=285.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCC
Q 007296 3 NLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQE 81 (609)
Q Consensus 3 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~ 81 (609)
+||....+.-|+++.-...+..+ ..||+|||||+|||||+|+|+.+....+||||+| +.||-|..+.|...+-
T Consensus 283 SLIDMYSEVLD~Ls~YD~sYnt~------DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy 356 (980)
T KOG0447|consen 283 SLIDMYSEVLDVLSDYDASYNTQ------DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH 356 (980)
T ss_pred HHHHHHHHHHHHHhccccccccc------ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc
Confidence 46777777777777665544322 3799999999999999999999999999999999 7999998888764432
Q ss_pred CccchhhccCCC----CccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccch
Q 007296 82 GKEYAEFMHLPR----KRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESI 157 (609)
Q Consensus 82 ~~~~~~~~~~~~----~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~ 157 (609)
-.+.|..... .+-+|+.+++.+++-.+....-.|+++|+.+|.+.+.||+.+.+++||+||++..-+.+-..+.
T Consensus 357 --HVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dT 434 (980)
T KOG0447|consen 357 --HVALFKDSSREFDLTKEEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDT 434 (980)
T ss_pred --hhhhhccccccccccchhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccc
Confidence 1233332221 2235888999999988877766789999999999999999999999999999988777777778
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCC----cHHHHHhccccccC
Q 007296 158 VQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGT----DAVDILEGKSYKLR 233 (609)
Q Consensus 158 ~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~ 233 (609)
.+.|-.|.+.|+++||+||||+-+++.|...+-.-.+...+||.|.|||+|+||.|+.++.- ...++++|+..|.+
T Consensus 435 Kd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMK 514 (980)
T KOG0447|consen 435 KETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMK 514 (980)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchh
Confidence 88899999999999999999999999999988888899999999999999999999987632 36789999999988
Q ss_pred -CceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCcc---ccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007296 234 -YPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHL---TDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTI 309 (609)
Q Consensus 234 -~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~---~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l 309 (609)
+|||+|+.--+. ..-++.+-+..|+.||.++..+..- ++.+.+.+|.-..+.-++..+++++-.........-
T Consensus 515 ALGYfaVVTGrGn---ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDaFkAtr 591 (980)
T KOG0447|consen 515 ALGYFAVVTGKGN---SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADSFKATR 591 (980)
T ss_pred hcceeEEEecCCC---cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999863221 1123445567789999987544332 467888899999999999998888766555554444
Q ss_pred HHHHHHHHHcCCC-CCCChhh-----hHHHHHHHHHHHHHHHHHhhccCCCC--Cchh-HhHHhhhhHHhhcccCccccC
Q 007296 310 SELEAELTRLGKP-IANDAGG-----KLYTAMEISRAFDQIFKEHLDGVRPG--GDKI-YGVFDNQLPAGLKRLQFDKHL 380 (609)
Q Consensus 310 ~~~~~eL~~lg~~-~~~~~~~-----~~~~l~~~~~~f~~~~~~~~~g~~~~--~~~i-~~~f~~~~~~~~~~~~~~~~~ 380 (609)
-..+.|...-=+. +..+.++ +..++=.++ ..++.--+..+...+. ..++ ...|++.+..+...++-..+.
T Consensus 592 FNLEtEWKNnfpRlRel~RdELfdKAkgEILDEvi-~lsqv~~k~w~e~l~~~~~e~vs~~~~~~~~lpaA~~~~sg~Fn 670 (980)
T KOG0447|consen 592 FNLETEWKNNYPRLRELDRNELFEKAKNEILDEVI-SLSQVTPKHWEEILQQSLWERVSTHVIENIYLPAAQTMNSGTFN 670 (980)
T ss_pred hhhhhhhhhcChHhhhcChHHHHHHhhhhHHHHHH-hhhhcChhhHHHHHHHHHHHHhhhhhhhhccchhhhcccccccc
Confidence 4445544332111 1111111 001111111 1111101111100000 0000 012222221111111111111
Q ss_pred ChhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Q 007296 381 SMDNVRKLITEADGYQPHLIAPEQGYRRLIESCLVTIRGPAEAAVDAIHGILKELVQ 437 (609)
Q Consensus 381 ~~~~i~~~i~~~~g~~p~~~~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~ 437 (609)
+.-||+.. .+++. +.+.-.-|.+++.|-+.+...+-+|+-+-.+.|++.|.+.|.
T Consensus 671 ttvdIklk-~w~DK-qL~~k~ve~~w~tl~e~f~r~~~~~~~k~hd~ifd~lkeav~ 725 (980)
T KOG0447|consen 671 TTVDIKLK-QWTDK-QLPNKAVEVAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAVK 725 (980)
T ss_pred eeehhhhh-hhhhh-hcchhhhHHHHHHHHHHHHHHhccccccccchHHHHHHHHHH
Confidence 12222211 12222 233334588899999988888999998889999998888763
No 5
>smart00302 GED Dynamin GTPase effector domain.
Probab=99.91 E-value=5.8e-24 Score=179.05 Aligned_cols=89 Identities=40% Similarity=0.603 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 007296 515 TYLRRIGSTVLSYVNMVCASLRHSIPKSVVYCQVREAKRSLLDYFFAELGKKEIKQLSSLLDEDPAVMQRRTNLAKRLEL 594 (609)
Q Consensus 515 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~lq~~l~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~~~~ 594 (609)
.++++|+.++.|||+||+++++|+|||+||||||+.+++.||.+|++.||+++. +++||+|||+|++||+.|++++++
T Consensus 4 ~~~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~~~~--~~~LL~E~~~i~~kR~~~~~~l~~ 81 (92)
T smart00302 4 SELEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYKEEL--LDELLEEDPEIASKRKELKKRLEL 81 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCccc--HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999765 999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 007296 595 YRSAQSEIEMV 605 (609)
Q Consensus 595 L~~A~~~l~~~ 605 (609)
|++|+++|++|
T Consensus 82 L~~A~~~l~~v 92 (92)
T smart00302 82 LKKARQIIAAV 92 (92)
T ss_pred HHHHHHHHhcC
Confidence 99999999876
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.3e-22 Score=200.73 Aligned_cols=223 Identities=18% Similarity=0.339 Sum_probs=166.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
....|+|||.||+|||||+|+|+|.++ .++|+.|.++| .+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~QTTR-----------------------------------~~ 44 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR-----------------------------------NR 44 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCcchhh-----------------------------------hh
Confidence 567899999999999999999999998 89999998887 44
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.| |...+..+++||||||++..... +.+.+.+.+.+.+.++|.|+++ +++...+...+..
T Consensus 45 I~G-------------I~t~~~~QiIfvDTPGih~pk~~-----l~~~m~~~a~~sl~dvDlilfv-vd~~~~~~~~d~~ 105 (298)
T COG1159 45 IRG-------------IVTTDNAQIIFVDTPGIHKPKHA-----LGELMNKAARSALKDVDLILFV-VDADEGWGPGDEF 105 (298)
T ss_pred eeE-------------EEEcCCceEEEEeCCCCCCcchH-----HHHHHHHHHHHHhccCcEEEEE-EeccccCCccHHH
Confidence 555 66666789999999999986433 7788888899999999988765 4666656655543
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCCh---hhhcccccHHHHHHHHHHHhccCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQ---ADINKSVDMIAARRREHEYFKNSPE 269 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~i~~~~~~~~~~~~E~~ff~~~~~ 269 (609)
++..+.....|.|+++||+|...+......+.. ......+|..+++.|+ .+++.+........+|.++|+....
T Consensus 106 -il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 106 -ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred -HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhh
Confidence 555555566899999999999987753334433 2233355555555554 6778888888888899999998887
Q ss_pred CCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHcC
Q 007296 270 YGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAELTRLG 320 (609)
Q Consensus 270 ~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg 320 (609)
+++.++++ -..+.+++.++...+++||+....-.++....+..+..+.
T Consensus 183 itD~~~rf---~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~ 230 (298)
T COG1159 183 ITDRPERF---LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIH 230 (298)
T ss_pred ccCChHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEE
Confidence 87777766 3458899999999999999877543333333233333333
No 7
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.87 E-value=1e-21 Score=185.74 Aligned_cols=166 Identities=34% Similarity=0.495 Sum_probs=133.1
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCc--cchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 37 IAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGK--EYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
|+|+|.+|||||||||+|+|.+++|.+.+.||++|+.+++.+.+... .+..........+.++.++.+.+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 79999999999999999999999999999999999999987766532 1111112225567889999999988877777
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
+....++...+.+....+...+++||||||+....... .+++.+|+.++|++|+ |.+++.++..++...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~vi~-V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADVVIF-VVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEEEEE-EEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCEEEE-EeccCcccchHHHHHH
Confidence 66777888888888999999999999999997643321 3789999988887765 5578888888888889
Q ss_pred HHHhCCCCCceEEEeccc
Q 007296 195 SREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK~ 212 (609)
.+..++...++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 999999999999999995
No 8
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=99.86 E-value=2.4e-21 Score=163.73 Aligned_cols=89 Identities=28% Similarity=0.428 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 007296 515 TYLRRIGSTVLSYVNMVCASLRHSIPKSVVYCQVREAKRSLLDYFFAELGKKEIKQLSSLLDEDPAVMQRRTNLAKRLEL 594 (609)
Q Consensus 515 ~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~lq~~l~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~~~~ 594 (609)
.++++|++++.|||+||++||+|+|||+|+||||+.+.+.|+.+|+..||.++. +++||+|||+|+++|+.|++++++
T Consensus 4 ~~~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~--~~~Ll~Ed~~i~~kR~~l~~~~~~ 81 (92)
T PF02212_consen 4 REVEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEED--LEELLQEDPEIAEKREELKKKLER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG--CCCCT--GHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHH--HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999875 999999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 007296 595 YRSAQSEIEMV 605 (609)
Q Consensus 595 L~~A~~~l~~~ 605 (609)
|++|+++|++|
T Consensus 82 L~~A~~~L~~~ 92 (92)
T PF02212_consen 82 LKKAQQILSEV 92 (92)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 99999999876
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=1.7e-19 Score=183.92 Aligned_cols=210 Identities=14% Similarity=0.173 Sum_probs=138.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
..|+|+|.+|||||||+|+|+|.++ .+++..|.+++. ...
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~-----~~vs~~~~TTr~-----------------------------------~i~ 40 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKI-----SITSPKAQTTRN-----------------------------------RIS 40 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcE-----eecCCCCCcccC-----------------------------------cEE
Confidence 3699999999999999999999986 455555533330 000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
| +...+...+.||||||+.... ..+.+.+...+..++.++|.+++++++.+ .... + ..+
T Consensus 41 ~-------------i~~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl~VvD~~~-~~~~-~-~~i 99 (270)
T TIGR00436 41 G-------------IHTTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLILFVVDSDQ-WNGD-G-EFV 99 (270)
T ss_pred E-------------EEEcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEEEEEECCC-CCch-H-HHH
Confidence 1 222233468999999997642 12444455567788999999988765443 2222 1 234
Q ss_pred HHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccC-CceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCcc
Q 007296 195 SREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLR-YPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHL 273 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~ 273 (609)
...+...+.|+++|+||+|+.++.. ..+.+........ ..++.+++.++.|++++.+.+.....+.++++.....++.
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~ 178 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQ 178 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCC
Confidence 4445556789999999999975332 2222211111111 2578888888899998888887777777766665555554
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007296 274 TDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTI 309 (609)
Q Consensus 274 ~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l 309 (609)
+.++ ...+.+++.++.++++++|+-.....+.+
T Consensus 179 ~~~~---~~~e~ire~~~~~~~~e~p~~~~~~~~~~ 211 (270)
T TIGR00436 179 PDRF---KISEIIREKIIRYTKEEIPHSVRVEIERK 211 (270)
T ss_pred CHHH---HHHHHHHHHHHHhcccccCceEEEEEEEE
Confidence 4433 45589999999999999998776544443
No 10
>PRK00089 era GTPase Era; Reviewed
Probab=99.75 E-value=4e-18 Score=176.06 Aligned_cols=214 Identities=18% Similarity=0.305 Sum_probs=136.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
....|+|+|.+|||||||+|+|+|.++ .+++..|.+++ ..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~~tt~-----------------------------------~~ 43 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKPQTTR-----------------------------------HR 43 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCce-----eecCCCCCccc-----------------------------------cc
Confidence 467899999999999999999999987 44555553222 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..| +...+..+++||||||+.... ..+.+.+...+..++.++|+++++++. +..+...+ .
T Consensus 44 i~~-------------i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D~il~vvd~-~~~~~~~~-~ 103 (292)
T PRK00089 44 IRG-------------IVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVDLVLFVVDA-DEKIGPGD-E 103 (292)
T ss_pred EEE-------------EEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCCEEEEEEeC-CCCCChhH-H
Confidence 111 222234689999999997643 124455566677888999999887654 33333333 2
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcccccc-CCceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKL-RYPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYG 271 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~ 271 (609)
.++..+...+.|+++|+||+|+..........+....... ...++.+++.++.+++++...+.....+.++++.....+
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~t 183 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQIT 183 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 3555555557899999999999843222222222111111 134566777777788877777766666555555444444
Q ss_pred ccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 007296 272 HLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTI 309 (609)
Q Consensus 272 ~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l 309 (609)
+.+.+ ....+.+++.++.++++++|+-.....+.+
T Consensus 184 d~~~r---~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~ 218 (292)
T PRK00089 184 DRPER---FLAAEIIREKLLRLLGDELPYSVAVEIEKF 218 (292)
T ss_pred CCCHH---HHHHHHHHHHHHhhCCccCCceEEEEEEEE
Confidence 33332 234588899999999999998765444333
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=1.5e-17 Score=174.62 Aligned_cols=211 Identities=17% Similarity=0.234 Sum_probs=140.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
..|++||.+|||||||+|+|+|..+ .+++..|.+++
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~~tTr--------------------------------------- 88 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKVQTTR--------------------------------------- 88 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCCCCcc---------------------------------------
Confidence 3899999999999999999999886 34444442222
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
+.+.- +...+..++.||||||+..... .+...+...+..++.++|++++++++ ...+...+ ..+
T Consensus 89 --------~~~~~-~~~~~~~qi~~~DTpG~~~~~~-----~l~~~~~r~~~~~l~~aDvil~VvD~-~~s~~~~~-~~i 152 (339)
T PRK15494 89 --------SIITG-IITLKDTQVILYDTPGIFEPKG-----SLEKAMVRCAWSSLHSADLVLLIIDS-LKSFDDIT-HNI 152 (339)
T ss_pred --------CcEEE-EEEeCCeEEEEEECCCcCCCcc-----cHHHHHHHHHHHHhhhCCEEEEEEEC-CCCCCHHH-HHH
Confidence 00000 1112234789999999865321 24444444555678899999887654 33333322 124
Q ss_pred HHHhCCCCCceEEEecccCcCCCCC-cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCcc
Q 007296 195 SREVDPRGDRTFGVLTKIDLMDKGT-DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHL 273 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~ 273 (609)
+..+...+.+.|+|+||+|+.+... +..+.+.. ......++.+++.++.+++++++.+.....|.++++....+++.
T Consensus 153 l~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~--~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~ 230 (339)
T PRK15494 153 LDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTE--NHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDL 230 (339)
T ss_pred HHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHh--cCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4444445678899999999865321 11222211 11124578888888899999999998888999988888777776
Q ss_pred ccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 007296 274 TDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTIS 310 (609)
Q Consensus 274 ~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~ 310 (609)
+.++ ...+.+++.++.++++++|+-.....+.+.
T Consensus 231 ~~~~---~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~ 264 (339)
T PRK15494 231 PMRF---IAAEITREQLFLNLQKELPYKLTVQTEKWE 264 (339)
T ss_pred CHHH---HHHHHHHHHHHhhCCcccCceEEEEEEEEE
Confidence 6544 345889999999999999988765554444
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=2.5e-17 Score=171.97 Aligned_cols=160 Identities=22% Similarity=0.322 Sum_probs=116.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.|.|++||.||+|||||+|+|+|.+. .+|...|.+++ ++.
T Consensus 3 ~~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGvTR-----------------------------------Dr~ 42 (444)
T COG1160 3 TPVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGVTR-----------------------------------DRI 42 (444)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCCcc-----------------------------------CCc
Confidence 39999999999999999999999998 88998887777 333
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+. .. .....+.+|||+|+.... ++.+.+.+...+...+..+|+||++| ++..++...|. .
T Consensus 43 y~~------------~~-~~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilfvV-D~~~Git~~D~-~ 103 (444)
T COG1160 43 YGD------------AE-WLGREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILFVV-DGREGITPADE-E 103 (444)
T ss_pred cce------------eE-EcCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEEEE-eCCCCCCHHHH-H
Confidence 331 11 122358999999998642 34588999999999999999998755 66666666664 5
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCc-eeeEeeCChhhhcccccHHHHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP-WIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+|+.+.+.++|+|+|+||+|..+......++ +.+++| .+++++-.+.|+.++.+...+.
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----yslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYEF-----YSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHHH-----HhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence 8888888889999999999987444333333 444443 2344444456777766655554
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.70 E-value=3.4e-18 Score=157.75 Aligned_cols=149 Identities=26% Similarity=0.356 Sum_probs=95.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|.||+|||||+|+|+|.+. .++.+|.++.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~------~v~n~pG~Tv---------------------------------------- 35 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ------KVGNWPGTTV---------------------------------------- 35 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE------EEEESTTSSS----------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------eecCCCCCCe----------------------------------------
Confidence 699999999999999999999985 2334441111
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh--cCCceEEEEEecCCCcccchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
....-. +. .+...+.||||||+...... +. . +.++.+|+ .++|.+|+++++.+ .+..+.
T Consensus 36 -----~~~~g~--~~-~~~~~~~lvDlPG~ysl~~~--s~--e---e~v~~~~l~~~~~D~ii~VvDa~~----l~r~l~ 96 (156)
T PF02421_consen 36 -----EKKEGI--FK-LGDQQVELVDLPGIYSLSSK--SE--E---ERVARDYLLSEKPDLIIVVVDATN----LERNLY 96 (156)
T ss_dssp -----EEEEEE--EE-ETTEEEEEEE----SSSSSS--SH--H---HHHHHHHHHHTSSSEEEEEEEGGG----HHHHHH
T ss_pred -----eeeeEE--EE-ecCceEEEEECCCcccCCCC--Cc--H---HHHHHHHHhhcCCCEEEEECCCCC----HHHHHH
Confidence 110001 11 12358899999999875332 21 1 45677777 47998887665543 345667
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcH--HHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDA--VDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
++.++...|.|+++|+||+|...+.... .+.+. ..++.+.+.++++++++++++.+
T Consensus 97 l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls---~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 97 LTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLS---ERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp HHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHH---HHHTS-EEEEBTTTTBTHHHHHH
T ss_pred HHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHH---HHhCCCEEEEEeCCCcCHHHHHh
Confidence 8888888899999999999998655421 22222 23556777788888888776543
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.68 E-value=1.9e-15 Score=158.49 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCc
Q 007296 4 LITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGK 83 (609)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 83 (609)
|-.+..+|.++.+..... .. .-+--.||++|.||+|||||||+|+|.+. .+||..|.++|
T Consensus 194 l~~~~~~l~~ll~~~~~g---~i----lr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~GTTR-------- 253 (454)
T COG0486 194 LEELIAELDELLATAKQG---KI----LREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIAGTTR-------- 253 (454)
T ss_pred HHHHHHHHHHHHHhhhhh---hh----hhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCCCCcc--------
Confidence 444555555555444321 11 13567999999999999999999999998 99999996655
Q ss_pred cchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHH-HH
Q 007296 84 EYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQD-IE 162 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~-i~ 162 (609)
|.|.-.+.- +..++.++||.|+... +|..+. =-
T Consensus 254 ---------------------------------------Dviee~i~i-~G~pv~l~DTAGiRet------~d~VE~iGI 287 (454)
T COG0486 254 ---------------------------------------DVIEEDINL-NGIPVRLVDTAGIRET------DDVVERIGI 287 (454)
T ss_pred ---------------------------------------ceEEEEEEE-CCEEEEEEecCCcccC------ccHHHHHHH
Confidence 222222211 2457899999999853 233333 23
Q ss_pred HHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeC
Q 007296 163 NMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNR 242 (609)
Q Consensus 163 ~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 242 (609)
+-....++++|.++++ .+++..+...+- .+.. ..+.++|+++|+||.|+..+..... . ....+..+..++..
T Consensus 288 eRs~~~i~~ADlvL~v-~D~~~~~~~~d~-~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~-~----~~~~~~~~i~iSa~ 359 (454)
T COG0486 288 ERAKKAIEEADLVLFV-LDASQPLDKEDL-ALIE-LLPKKKPIIVVLNKADLVSKIELES-E----KLANGDAIISISAK 359 (454)
T ss_pred HHHHHHHHhCCEEEEE-EeCCCCCchhhH-HHHH-hcccCCCEEEEEechhcccccccch-h----hccCCCceEEEEec
Confidence 4567789999988765 455554444443 2333 5577899999999999987653110 0 22334457888888
Q ss_pred ChhhhcccccHHHH
Q 007296 243 SQADINKSVDMIAA 256 (609)
Q Consensus 243 s~~~i~~~~~~~~~ 256 (609)
+++|++.+...+..
T Consensus 360 t~~Gl~~L~~~i~~ 373 (454)
T COG0486 360 TGEGLDALREAIKQ 373 (454)
T ss_pred CccCHHHHHHHHHH
Confidence 88888776655544
No 15
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=1.1e-12 Score=142.61 Aligned_cols=212 Identities=19% Similarity=0.248 Sum_probs=116.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCc-cc---hhhcc-----CC-------------
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGK-EY---AEFMH-----LP------------- 92 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~-~~---~~~~~-----~~------------- 92 (609)
|.++|+|..|+|||||+|+|+|.+++|.+...+|.+|+.++........ .+ ..|.. .|
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~pg~re~~L~~dtvgfI~~ll~~Lp~~Lv~~f~atl~e 149 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTD 149 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecCCcCceeeecCCccchHHHHHHhhHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999977644322210 00 00000 00
Q ss_pred -CCccCChHHHHHHHHHHh----------------------hhhc---CCCCc------ccC-CceEEEEecCC-----C
Q 007296 93 -RKRFNDFAAVRKEISDET----------------------DRET---GRSKA------IST-VPIHLSIFSPN-----V 134 (609)
Q Consensus 93 -~~~~~~~~~v~~~i~~~~----------------------~~~~---g~~~~------~s~-~~i~l~i~~~~-----~ 134 (609)
.....|..++...|+... .+.. +..-. |-. -.|.++..... .
T Consensus 150 ~~~ad~d~~~L~~~i~~~~~~e~~y~g~~~if~~L~~lndivr~~~~l~~~~p~d~ya~~~~~p~iev~f~hl~g~l~~~ 229 (741)
T PRK09866 150 VLEIDKDMRALMQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVEFVHLAGLESYP 229 (741)
T ss_pred HHhcCccHHHHHHHHhcCcchhhhhhchhhHHHHHhhHHHHHHHHHhhcCCCcHHHHhhhhcCceeeeeeeecccccccc
Confidence 000112222222221110 0000 10001 100 12223333333 3
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCC--ceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGD--RTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~--rti~VltK~ 212 (609)
.+++||||||+..... ..+..++...+..+|+|+++| +++......+. .+++.+...++ |+++|+||+
T Consensus 230 ~QIIFVDTPGIhk~~~--------~~L~k~M~eqL~eADvVLFVV-Dat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--------PHLQKMLNQQLARASAVLAVL-DYTQLKSISDE-EVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred CCEEEEECCCCCCccc--------hHHHHHHHHHHhhCCEEEEEE-eCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcc
Confidence 5899999999986321 112334445799999887755 55544444442 36666665564 999999999
Q ss_pred CcCCCCCcH----HHHHhccccccC---CceeeEeeCChhhhcccccHHHH
Q 007296 213 DLMDKGTDA----VDILEGKSYKLR---YPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 213 D~~~~~~~~----~~~l~~~~~~l~---~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
|+.+...+. .+++........ -..++|+...+.+++.+++.+..
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 997644322 222221100112 23566666666777666555544
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.61 E-value=8.4e-15 Score=154.15 Aligned_cols=158 Identities=19% Similarity=0.281 Sum_probs=100.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|+|++||.+|||||||+|+|+|.++...+...+|+-|++-.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~------------------------------------- 230 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRR------------------------------------- 230 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEE-------------------------------------
Confidence 6799999999999999999999998753333333444332211
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~ 190 (609)
+..++...+.||||||+.+. -|.++.+.++. +..++.++|++++|++..+..... ..
T Consensus 231 ----------------i~~~~~~~i~l~DT~G~~~~----l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~ 289 (351)
T TIGR03156 231 ----------------LDLPDGGEVLLTDTVGFIRD----LPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEA 289 (351)
T ss_pred ----------------EEeCCCceEEEEecCccccc----CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHH
Confidence 33334457899999999652 23445555555 345789999998876554332211 11
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+..+.+.+...+.|+++|+||+|+.+.. .... ... ....++.+++.++.|++++...+
T Consensus 290 ~~~~L~~l~~~~~piIlV~NK~Dl~~~~-~v~~-~~~----~~~~~i~iSAktg~GI~eL~~~I 347 (351)
T TIGR03156 290 VEKVLEELGAEDIPQLLVYNKIDLLDEP-RIER-LEE----GYPEAVFVSAKTGEGLDLLLEAI 347 (351)
T ss_pred HHHHHHHhccCCCCEEEEEEeecCCChH-hHHH-HHh----CCCCEEEEEccCCCCHHHHHHHH
Confidence 2345666665578999999999997532 1211 111 01246777777777776655433
No 17
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.1e-14 Score=154.92 Aligned_cols=181 Identities=18% Similarity=0.156 Sum_probs=107.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+..|++||.||||||||||+|++...-......+||.|..-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 569999999999999999999998631111223444442211
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCC---CcccchH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPAN---QDLATSD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~---~d~~~~~ 190 (609)
+..++...++|+||||+...+..+ ..+. ..+ .++++++++++++++... .+... .
T Consensus 201 ---------------v~~~~~~~i~~vDtPGi~~~a~~~--~~Lg---~~~-l~~i~radvlL~VVD~s~~~~~d~~e-~ 258 (390)
T PRK12298 201 ---------------VRVDDERSFVVADIPGLIEGASEG--AGLG---IRF-LKHLERCRVLLHLIDIAPIDGSDPVE-N 258 (390)
T ss_pred ---------------EEeCCCcEEEEEeCCCccccccch--hhHH---HHH-HHHHHhCCEEEEEeccCcccccChHH-H
Confidence 222333468999999998754321 1122 222 357889999988775431 12211 1
Q ss_pred HHHHHHHhCC-----CCCceEEEecccCcCCCCCcHHHHHhccccccC--CceeeEeeCChhhhcccccHHHHHHHHHHH
Q 007296 191 AIKISREVDP-----RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLR--YPWIGVVNRSQADINKSVDMIAARRREHEY 263 (609)
Q Consensus 191 ~l~l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~--~g~~~v~~~s~~~i~~~~~~~~~~~~E~~f 263 (609)
...+.+++.. .+.|.|+|+||+|+.++.. ..+.+......+. ..++.+++.+..++++++..+.....+.++
T Consensus 259 ~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 259 ARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred HHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 1123333332 3589999999999975432 2222221111111 246778888888898888888777777666
Q ss_pred hccCCCCCcccc
Q 007296 264 FKNSPEYGHLTD 275 (609)
Q Consensus 264 f~~~~~~~~~~~ 275 (609)
++....+++.+.
T Consensus 338 ~~~~~~~td~~~ 349 (390)
T PRK12298 338 EEAEEAEAPEKV 349 (390)
T ss_pred cCCcccccCccH
Confidence 655555554433
No 18
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.60 E-value=7.2e-15 Score=147.01 Aligned_cols=157 Identities=23% Similarity=0.325 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHHhcCCC-CCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCC
Q 007296 3 NLITLVNKIQRACTALGDHG-EESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQE 81 (609)
Q Consensus 3 ~l~~~~~~lq~~~~~~~~~~-~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 81 (609)
.+.++++++.+-+.-++... .-.+||....++|+|+|+|.||+|||||+++|++.+. -+-.+|
T Consensus 136 R~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp------EvA~YP---------- 199 (346)
T COG1084 136 RVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP------EVAPYP---------- 199 (346)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC------ccCCCC----------
Confidence 35677777777776666432 1267888888999999999999999999999999874 222333
Q ss_pred CccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHH
Q 007296 82 GKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDI 161 (609)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i 161 (609)
|+.+.|.+.....+...+++|||||+-+-+. +-...|
T Consensus 200 --------------------------------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl-----~ErN~I 236 (346)
T COG1084 200 --------------------------------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPL-----EERNEI 236 (346)
T ss_pred --------------------------------------ccccceeEeeeecCCceEEEecCCcccCCCh-----HHhcHH
Confidence 4555566666666677899999999987543 344556
Q ss_pred HHHHHHhhcCCceEEEEEecCCC--cccchHHHHHHHHhCCCC-CceEEEecccCcCCCC
Q 007296 162 ENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPRG-DRTFGVLTKIDLMDKG 218 (609)
Q Consensus 162 ~~~v~~yi~~~~~iIL~v~~a~~--d~~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~~ 218 (609)
+..+...+++-+.+||++.+.+. +....+-..+.+++.+.- .|++.|+||+|..+.+
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 66666666764444455444332 344444445666666543 5899999999998654
No 19
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=2.7e-15 Score=147.69 Aligned_cols=212 Identities=15% Similarity=0.239 Sum_probs=133.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..-+|+|||.||+|||||.|.++|.++ .++||.+.+++ .+
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv-----~~vS~K~~TTr-----------------------------------~~ 110 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKV-----SAVSRKVHTTR-----------------------------------HR 110 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcc-----cccccccccee-----------------------------------ee
Confidence 355999999999999999999999998 56666665555 12
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~~~~ 191 (609)
+.| |...+..++.|+||||+.......+.. +...+..-....++.+|+++++++.++.. ......
T Consensus 111 ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~v 176 (379)
T KOG1423|consen 111 ILG-------------IITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRV 176 (379)
T ss_pred eeE-------------EEecCceEEEEecCCcccccchhhhHH-HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHH
Confidence 223 555666799999999998754432111 11112223456788999998776655332 233445
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcH---HHHHhcc--------------------ccccCCce------eeEeeC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDA---VDILEGK--------------------SYKLRYPW------IGVVNR 242 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~---~~~l~~~--------------------~~~l~~g~------~~v~~~ 242 (609)
+.+.+.+. ..|.|+|+||+|........ .+.+.+. ..+-..|| |.|+..
T Consensus 177 l~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL 254 (379)
T KOG1423|consen 177 LHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSAL 254 (379)
T ss_pred HHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecc
Confidence 66666665 47899999999987655422 1222211 11122455 677788
Q ss_pred ChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHH
Q 007296 243 SQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQS 303 (609)
Q Consensus 243 s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~ 303 (609)
++.|++++..++-..+...++.+....-+ +.....--.+.+++.|.+|+..++|+-.+
T Consensus 255 ~G~GikdlkqyLmsqa~~gpW~y~a~i~T---~~s~e~l~~e~VReklLd~~pqEVPY~lq 312 (379)
T KOG1423|consen 255 YGEGIKDLKQYLMSQAPPGPWKYPADIVT---EESPEFLCSESVREKLLDHLPQEVPYNLQ 312 (379)
T ss_pred cccCHHHHHHHHHhcCCCCCCCCCccccc---ccCHHHHHHHHHHHHHHhhCccccCcceE
Confidence 88898887777766554343333222111 21222223478888889999999887543
No 20
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.59 E-value=8.7e-15 Score=137.94 Aligned_cols=128 Identities=27% Similarity=0.377 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++|.||++|..|+||||+||+|+|..-|. -++..|..+++.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LA----rtSktPGrTq~iN---------------------------------- 64 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLA----RTSKTPGRTQLIN---------------------------------- 64 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCccee----ecCCCCCccceeE----------------------------------
Confidence 79999999999999999999999976332 3344453333211
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEE--EEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIIL--AISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL--~v~~a~~d~~~~~ 190 (609)
.+..+ ..+.|||+||+.-... |++..+.+..++..|++.-..+.. .++++.......|
T Consensus 65 ----------------ff~~~-~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D 124 (200)
T COG0218 65 ----------------FFEVD-DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD 124 (200)
T ss_pred ----------------EEEec-CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH
Confidence 11111 2388999999875433 557889999999999996332322 2456666666555
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~ 219 (609)
. ++...+...+.++++|+||+|.+..+.
T Consensus 125 ~-em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 125 R-EMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred H-HHHHHHHHcCCCeEEEEEccccCChhH
Confidence 4 588888888999999999999998764
No 21
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=3.5e-15 Score=155.99 Aligned_cols=191 Identities=20% Similarity=0.299 Sum_probs=124.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+..+|+|||.||+|||||+|+|+|.+. .+++..|.++
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~aGTT-------------------------------------- 213 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIAGTT-------------------------------------- 213 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCCCcc--------------------------------------
Confidence 578999999999999999999999987 4555444333
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.+.|...+. .+...+.||||.|+.+...-... ++..--.-+...|..+|.++| |.+|..++..++.
T Consensus 214 ---------RD~I~~~~e-~~~~~~~liDTAGiRrk~ki~e~--~E~~Sv~rt~~aI~~a~vvll-viDa~~~~~~qD~- 279 (444)
T COG1160 214 ---------RDSIDIEFE-RDGRKYVLIDTAGIRRKGKITES--VEKYSVARTLKAIERADVVLL-VIDATEGISEQDL- 279 (444)
T ss_pred ---------ccceeeeEE-ECCeEEEEEECCCCCcccccccc--eEEEeehhhHhHHhhcCEEEE-EEECCCCchHHHH-
Confidence 345555554 34568999999999876543211 111111224467888998866 5678888888885
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcc-cccc-CCceeeEeeCCh---hhhcccccHHHHHHHHHHHhccC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGK-SYKL-RYPWIGVVNRSQ---ADINKSVDMIAARRREHEYFKNS 267 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l-~~g~~~v~~~s~---~~i~~~~~~~~~~~~E~~ff~~~ 267 (609)
+++..+...|...++|+||||++++.+...+..... ...+ .++|..+...|+ .++..+++....
T Consensus 280 ~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~----------- 348 (444)
T COG1160 280 RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKE----------- 348 (444)
T ss_pred HHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHH-----------
Confidence 599999999999999999999998743222222211 1122 367777777665 444444433322
Q ss_pred CCCCccccccChHHHHHHHHHHHHH
Q 007296 268 PEYGHLTDRMGSEYLGKVLSKHLET 292 (609)
Q Consensus 268 ~~~~~~~~~~g~~~L~~~L~~~L~~ 292 (609)
.|.....+++++.|.+.|......
T Consensus 349 -~~~~~~~ri~Ts~LN~~l~~a~~~ 372 (444)
T COG1160 349 -IYECATRRISTSLLNRVLEDAVAK 372 (444)
T ss_pred -HHHHhccccCHHHHHHHHHHHHHh
Confidence 122233567887777777666543
No 22
>PRK11058 GTPase HflX; Provisional
Probab=99.58 E-value=2.4e-14 Score=154.07 Aligned_cols=161 Identities=17% Similarity=0.262 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.+|.|++||.+|||||||+|+|+|.++...+.-.+|+-|++-.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~------------------------------------- 238 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR------------------------------------- 238 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE-------------------------------------
Confidence 5799999999999999999999998763222222333332111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--H
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--D 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~ 190 (609)
+..++...+.|+||||+.+. .|.++.+.+.. +..+++++|++|+|++..+.....+ .
T Consensus 239 ----------------i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~ 297 (426)
T PRK11058 239 ----------------IDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIEA 297 (426)
T ss_pred ----------------EEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHH
Confidence 22233336789999998653 24445555554 3567889999988766544322111 1
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCc-eeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP-WIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+..+..++...+.|+++|+||+|+.+......+.. ..+.+ ++.+++.++.|+++++..+..
T Consensus 298 v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~-----~~~~~~~v~ISAktG~GIdeL~e~I~~ 359 (426)
T PRK11058 298 VNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRD-----EENKPIRVWLSAQTGAGIPLLFQALTE 359 (426)
T ss_pred HHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHH-----hcCCCceEEEeCCCCCCHHHHHHHHHH
Confidence 23456666666789999999999975321111111 11222 255677777777766655543
No 23
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3e-14 Score=148.76 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=98.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-++.|++||.||||||||||+|++.+.-..+...+|+.|..-.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~------------------------------------- 199 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV------------------------------------- 199 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE-------------------------------------
Confidence 4689999999999999999999987531112223444442211
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH--
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD-- 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~-- 190 (609)
+..++...++++||||+...+..+ . .+.....+++++++++|+|++..+.+ ..++
T Consensus 200 ----------------v~~~~~~~~~i~D~PGli~ga~~~--~----gLg~~flrhie~a~vlI~ViD~s~~~-s~e~~~ 256 (335)
T PRK12299 200 ----------------VRVDDYKSFVIADIPGLIEGASEG--A----GLGHRFLKHIERTRLLLHLVDIEAVD-PVEDYK 256 (335)
T ss_pred ----------------EEeCCCcEEEEEeCCCccCCCCcc--c----cHHHHHHHHhhhcCEEEEEEcCCCCC-CHHHHH
Confidence 222244578999999998654331 1 12233455778899888876654333 1122
Q ss_pred -HHHHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 -AIKISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 -~l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+...+..+++ ...|.++|+||+|+.+......+.++.........++.+++.+.+++++++..+...
T Consensus 257 ~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 257 TIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred HHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 2233333333 368999999999997644211111111111223456777777777777766655443
No 24
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.54 E-value=4.5e-13 Score=145.07 Aligned_cols=179 Identities=18% Similarity=0.198 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCc
Q 007296 4 LITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGK 83 (609)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 83 (609)
|..+.++|+++...... ..+ -+-++|+++|.+|||||||+|+|+|.++ .+++..|.+++
T Consensus 181 l~~~~~~l~~ll~~~~~----~~~----~~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~pgtTr-------- 239 (442)
T TIGR00450 181 LLSIIAELKDILNSYKL----EKL----DDGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIKGTTR-------- 239 (442)
T ss_pred HHHHHHHHHHHHHHHHH----HHh----hcCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCCcEE--------
Confidence 44555666666555521 122 2568999999999999999999999865 45555564433
Q ss_pred cchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHH
Q 007296 84 EYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIEN 163 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~ 163 (609)
+.+...+.. +...+.+|||||+..... .+...--.
T Consensus 240 ---------------------------------------d~~~~~i~~-~g~~v~l~DTaG~~~~~~-----~ie~~gi~ 274 (442)
T TIGR00450 240 ---------------------------------------DVVEGDFEL-NGILIKLLDTAGIREHAD-----FVERLGIE 274 (442)
T ss_pred ---------------------------------------EEEEEEEEE-CCEEEEEeeCCCcccchh-----HHHHHHHH
Confidence 011111111 224578999999865321 11111123
Q ss_pred HHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCC
Q 007296 164 MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRS 243 (609)
Q Consensus 164 ~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 243 (609)
....|++.+|++++|++.. ......+. +...+...+.|+|+|+||+|+.+. +...+. ..++..++.+++.+
T Consensus 275 ~~~~~~~~aD~il~V~D~s-~~~s~~~~--~l~~~~~~~~piIlV~NK~Dl~~~--~~~~~~----~~~~~~~~~vSak~ 345 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDAS-QPLTKDDF--LIIDLNKSKKPFILVLNKIDLKIN--SLEFFV----SSKVLNSSNLSAKQ 345 (442)
T ss_pred HHHHHHhhCCEEEEEEECC-CCCChhHH--HHHHHhhCCCCEEEEEECccCCCc--chhhhh----hhcCCceEEEEEec
Confidence 4568899999998876543 33222222 444454457899999999999654 222221 12334567777765
Q ss_pred hhhhcccccHHHHHH
Q 007296 244 QADINKSVDMIAARR 258 (609)
Q Consensus 244 ~~~i~~~~~~~~~~~ 258 (609)
.+++++++......
T Consensus 346 -~gI~~~~~~L~~~i 359 (442)
T TIGR00450 346 -LKIKALVDLLTQKI 359 (442)
T ss_pred -CCHHHHHHHHHHHH
Confidence 45556555544433
No 25
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.54 E-value=2.8e-13 Score=147.51 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+-++|+++|.+|||||||+|+|+|.++ .+++..|.+++
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~gtT~------------------------------------- 251 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIAGTTR------------------------------------- 251 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCccc-------------------------------------
Confidence 457999999999999999999999875 33444442221
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHH-HHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDI-ENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i-~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+.+...+.. +...+.+|||||+... .+..+.. -..+..+++++|++++|++. +......+
T Consensus 252 ----------d~~~~~i~~-~g~~i~l~DT~G~~~~------~~~ie~~gi~~~~~~~~~aD~il~VvD~-s~~~s~~~- 312 (449)
T PRK05291 252 ----------DVIEEHINL-DGIPLRLIDTAGIRET------DDEVEKIGIERSREAIEEADLVLLVLDA-SEPLTEED- 312 (449)
T ss_pred ----------ccEEEEEEE-CCeEEEEEeCCCCCCC------ccHHHHHHHHHHHHHHHhCCEEEEEecC-CCCCChhH-
Confidence 111111211 2346899999998642 2222221 12355789999999886654 33332222
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..+... ..+.|+++|+||+|+.+.... . ......++.+++.++.|+++++..+....
T Consensus 313 ~~~l~~--~~~~piiiV~NK~DL~~~~~~-~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 313 DEILEE--LKDKPVIVVLNKADLTGEIDL-E-------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred HHHHHh--cCCCCcEEEEEhhhccccchh-h-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 233333 446899999999999754321 1 11234678889999889888877766554
No 26
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.52 E-value=1.7e-13 Score=133.83 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=93.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|+|+|+|.+|||||||+|+|+|..+.+.+....|.-|..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~--------------------------------------- 80 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT--------------------------------------- 80 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee---------------------------------------
Confidence 57999999999999999999999987533332222222210
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~ 190 (609)
..+..++...++||||||+.... +....+.+.... .++.++|+++++++..+..... ..
T Consensus 81 --------------~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~ 141 (204)
T cd01878 81 --------------RRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIET 141 (204)
T ss_pred --------------EEEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHH
Confidence 01222233378999999986531 222333333333 4567899888876543322211 22
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+..+.+.+...+.++++|+||+|+.+..... ... ......++.+++..+.++++...
T Consensus 142 ~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-~~~----~~~~~~~~~~Sa~~~~gi~~l~~ 198 (204)
T cd01878 142 VEKVLKELGAEDIPMILVLNKIDLLDDEELE-ERL----EAGRPDAVFISAKTGEGLDELLE 198 (204)
T ss_pred HHHHHHHcCcCCCCEEEEEEccccCChHHHH-HHh----hcCCCceEEEEcCCCCCHHHHHH
Confidence 3455566665678999999999997644211 111 11223466777777666655444
No 27
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.51 E-value=1.1e-13 Score=130.04 Aligned_cols=155 Identities=16% Similarity=0.227 Sum_probs=89.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
|.|+|+|.+|||||||+|+|++..+.......+|+-. .
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~---~--------------------------------------- 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHI---G--------------------------------------- 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEee---c---------------------------------------
Confidence 7899999999999999999998876221111111110 0
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
...+....+...++++|||||.... ..+...++..+|++++++...+.+ .......
T Consensus 39 ---------~~~~~~~~~~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~il~v~d~~~~~--~~~~~~~ 94 (168)
T cd01887 39 ---------AFEVPAEVLKIPGITFIDTPGHEAF-------------TNMRARGASLTDIAILVVAADDGV--MPQTIEA 94 (168)
T ss_pred ---------cEEEecccCCcceEEEEeCCCcHHH-------------HHHHHHHHhhcCEEEEEEECCCCc--cHHHHHH
Confidence 0001111123468999999996432 445667788999998876554322 2222233
Q ss_pred HHHhCCCCCceEEEecccCcCCCCCc-HHHHHhccc------cccCCceeeEeeCChhhhcccccHHH
Q 007296 195 SREVDPRGDRTFGVLTKIDLMDKGTD-AVDILEGKS------YKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~------~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
...+...+.|.++|+||+|+.+...+ ....+.... ......++.+++..+.++.++++.+.
T Consensus 95 ~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T cd01887 95 IKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAIL 162 (168)
T ss_pred HHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHH
Confidence 33344467899999999998754321 122221110 11123566667766676666555444
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.49 E-value=1.3e-13 Score=130.05 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=96.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+++|++|+|||||++++++.+|-+ ....++...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~------------------------------------------ 39 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGID------------------------------------------ 39 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccce------------------------------------------
Confidence 5799999999999999999999987622 111111000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
.....+.+. .....+.+|||||..+. ..+...+++++|++|++++..+.+- ....+
T Consensus 40 --------~~~~~~~~~-~~~~~l~l~D~~g~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~ 97 (167)
T cd01867 40 --------FKIRTIELD-GKKIKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDEKSFENIRNW 97 (167)
T ss_pred --------EEEEEEEEC-CEEEEEEEEeCCchHHH-------------HHHHHHHhCCCCEEEEEEECcCHHHHHhHHHH
Confidence 000111111 12246889999995442 4566788999999988775433211 11234
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+..+....+.+.|+++|.||+|+.+......+.........+.+|+.+++.++.++++.+....
T Consensus 98 ~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 98 MRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred HHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 4444444556789999999999985432222222222233456788888888888877665444
No 29
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.1e-13 Score=148.86 Aligned_cols=157 Identities=21% Similarity=0.313 Sum_probs=110.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+++|+||+||||++|+|+|.+. .+.+.|.++. ++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q------~VgNwpGvTV-----------------------------------Ekk 41 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ------KVGNWPGVTV-----------------------------------EKK 41 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc------eecCCCCeeE-----------------------------------EEE
Confidence 45699999999999999999999985 5667776666 222
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.| ........+++||+||+..-... +.| +..+++|+. ++|+||-+|++.| ....
T Consensus 42 eg-------------~~~~~~~~i~ivDLPG~YSL~~~--S~D-----E~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG-------------KLKYKGHEIEIVDLPGTYSLTAY--SED-----EKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE-------------EEEecCceEEEEeCCCcCCCCCC--Cch-----HHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 22 11122345899999999876543 222 667889987 4788887776655 4556
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+.+.-++-..|.|+|+++|++|...+.....+.-+ ....++.+-+.++...++|+++.+.....
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~-L~~~LGvPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEK-LSKLLGVPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHH-HHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 77777888889999999999999876542222211 12456677778888888888776665543
No 30
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=1.5e-13 Score=148.96 Aligned_cols=183 Identities=21% Similarity=0.206 Sum_probs=101.0
Q ss_pred HHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCC
Q 007296 15 CTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRK 94 (609)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~ 94 (609)
|+..|..+.+..+--..--+..|++||.+|||||||||+|++.+.-..+...+|+.|..-.
T Consensus 140 ~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGv------------------- 200 (500)
T PRK12296 140 FALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGV------------------- 200 (500)
T ss_pred cccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEE-------------------
Confidence 3445555543222111224789999999999999999999997641112223444442111
Q ss_pred ccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCce
Q 007296 95 RFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNC 174 (609)
Q Consensus 95 ~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~ 174 (609)
+.. ....++|+||||++..+..+ ..+......+++++++
T Consensus 201 ----------------------------------v~~-~~~~f~laDtPGliegas~g------~gLg~~fLrhieradv 239 (500)
T PRK12296 201 ----------------------------------VQA-GDTRFTVADVPGLIPGASEG------KGLGLDFLRHIERCAV 239 (500)
T ss_pred ----------------------------------EEE-CCeEEEEEECCCCccccchh------hHHHHHHHHHHHhcCE
Confidence 111 22468999999998643221 1112223456788999
Q ss_pred EEEEEecCCC----ccc-chH-HHHHHHHh-----------CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCcee
Q 007296 175 IILAISPANQ----DLA-TSD-AIKISREV-----------DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWI 237 (609)
Q Consensus 175 iIL~v~~a~~----d~~-~~~-~l~l~~~~-----------d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 237 (609)
||+||+.++. +.. .-+ +...+..+ ...+.|.|+|+||+|+.+... ..+.+..........++
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVF 318 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEE
Confidence 9887765431 111 111 11112222 224689999999999964332 22222211111234567
Q ss_pred eEeeCChhhhcccccHHHHHH
Q 007296 238 GVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 238 ~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.+++.+.+++++++..+....
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 319 EVSAASREGLRELSFALAELV 339 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 777777777777665554443
No 31
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.49 E-value=2.9e-13 Score=126.16 Aligned_cols=157 Identities=18% Similarity=0.273 Sum_probs=92.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccc-cccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGI-VTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-.+|+++|.+||||||++|+++|.++.+.+... +|+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----------------------------------------- 41 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-----------------------------------------
Confidence 468999999999999999999998752222111 11100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+. .+.......+.+|||||+...... ....+......++..+|.+++++...+. ..... .
T Consensus 42 ------------~~-~~~~~~~~~~~liDtpG~~~~~~~-----~~~~~~~~~~~~~~~~d~i~~v~d~~~~-~~~~~-~ 101 (168)
T cd04163 42 ------------IR-GIYTDDDAQIIFVDTPGIHKPKKK-----LGERMVKAAWSALKDVDLVLFVVDASEP-IGEGD-E 101 (168)
T ss_pred ------------EE-EEEEcCCeEEEEEECCCCCcchHH-----HHHHHHHHHHHHHHhCCEEEEEEECCCc-cCchH-H
Confidence 00 122222357899999998764321 2233455667788999998887655433 22222 2
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcccccc-CCceeeEeeCChhhhcccc
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKL-RYPWIGVVNRSQADINKSV 251 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~ 251 (609)
.+.+.+...+.+.++|+||+|+........+.+....... ...++.+++..+.+++++.
T Consensus 102 ~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 102 FILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELL 161 (168)
T ss_pred HHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHH
Confidence 3445555557899999999999843323333332211222 2345556665555554433
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=3.4e-13 Score=147.00 Aligned_cols=166 Identities=19% Similarity=0.241 Sum_probs=97.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|+|||||+|+|+|.+..+. +..|.+++
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~-----~~~~gtt~------------------------------------- 208 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIV-----SDIAGTTR------------------------------------- 208 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeec-----CCCCCceE-------------------------------------
Confidence 457999999999999999999999875222 22221111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.+...+.. +...+++|||||+.+.... ...+.......+..+++.+|++|+|++ +......++ .
T Consensus 209 ----------~~~~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV~D-~~~~~~~~~-~ 273 (429)
T TIGR03594 209 ----------DSIDIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLVLD-ATEGITEQD-L 273 (429)
T ss_pred ----------CcEeEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEEEE-CCCCccHHH-H
Confidence 111111211 2236899999999765432 111222222334578999999988664 444454444 3
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcH---HHHHhcccccc-CCceeeEeeCChhhhcccccHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDA---VDILEGKSYKL-RYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~---~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
.+++.+...+.+.|+|+||+|+.+..... .+.+......+ ..+++.+++.++.++++.+....
T Consensus 274 ~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 274 RIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 56777766789999999999998322111 12222111111 13556666666666665554443
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.49 E-value=2.1e-13 Score=128.45 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=95.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccccc-ccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV-TRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-+|+++|++|||||||++++++..|-+.-.... +++.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~------------------------------------------ 39 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK------------------------------------------ 39 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE------------------------------------------
Confidence 479999999999999999999987622111000 0010
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~ 191 (609)
...+.. ......+.+|||||..+. ..+...|++++++++++++..+.. ....+|
T Consensus 40 ----------~~~~~~-~~~~~~~~l~Dt~g~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~ 95 (165)
T cd01865 40 ----------VKTVFR-NDKRVKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQDW 95 (165)
T ss_pred ----------EEEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHccCCcEEEEEEECCCHHHHHHHHHH
Confidence 000101 111246789999996542 556788999999998877654321 111334
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+.......+...|+++|+||+|+.+......+........++.+|+.+++.++.++++++.....
T Consensus 96 ~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 96 STQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred HHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44445555556889999999999765421111111111234456888888888888776665543
No 34
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.49 E-value=1.8e-13 Score=129.05 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=85.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
.|++||.+|||||||+|+|+|.+..+......|+-|..-
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~----------------------------------------- 40 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG----------------------------------------- 40 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcce-----------------------------------------
Confidence 489999999999999999998764111111122222100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC-cccc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ-DLAT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~-d~~~--~~~l 192 (609)
. +...+...+.||||||+....... .++ .......+..+|+++++++..+. +... ..+.
T Consensus 41 ----------~--~~~~~~~~~~l~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~ 102 (170)
T cd01898 41 ----------V--VRVDDGRSFVVADIPGLIEGASEG--KGL----GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIR 102 (170)
T ss_pred ----------E--EEcCCCCeEEEEecCcccCccccc--CCc----hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHH
Confidence 0 111222478999999986432211 111 12223345679999887765433 1111 1222
Q ss_pred HHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccc-cCCceeeEeeCChhhhccccc
Q 007296 193 KISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYK-LRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 193 ~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+......+ .+.|.++|+||+|+.++... .+.+...... ....++.+++.++.++++++.
T Consensus 103 ~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 164 (170)
T cd01898 103 NELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGLDELLR 164 (170)
T ss_pred HHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHH
Confidence 33333332 36899999999999765432 1211111111 134567777777766665544
No 35
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=3.3e-13 Score=130.41 Aligned_cols=117 Identities=12% Similarity=0.174 Sum_probs=77.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..+.||||||..+ ...+...|++.+|++|++++..+.+- ....++..+....+.+.|+++|+||+
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 50 VKLQIWDTAGQER-------------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEEeCCCcHH-------------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 3678999999543 24566788999999988775543211 11234455566666678999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHHHHh
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREHEYF 264 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff 264 (609)
|+........+.........+.+|+.+++.++.++++++..+.+...+....
T Consensus 117 Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 117 DMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred cchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 9974332111111111123346799999999999999888887777666543
No 36
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.48 E-value=3e-13 Score=127.09 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=95.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+|+|+++||||||++++++.++-+.....++..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------- 39 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE------------------------------------------- 39 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceE-------------------------------------------
Confidence 4689999999999999999999988622221111100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
+ ....+.+.+ ....+.+|||||..+. ..+...|++.++++|++++..+... ....+
T Consensus 40 ------~--~~~~~~~~~-~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 97 (165)
T cd01868 40 ------F--ATRSIQIDG-KTIKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKKQTFENVERW 97 (165)
T ss_pred ------E--EEEEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHHHCCCCEEEEEEECcCHHHHHHHHHH
Confidence 0 001111111 1236889999996542 5567788999999988776543211 11234
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+..++...+.+.|+++|.||+|+.+......+.........+.+|+.+++.++.++++.+..+
T Consensus 98 ~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 98 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred HHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 444555556678999999999987543211111111112235678999998888877665543
No 37
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.47 E-value=5.2e-13 Score=125.75 Aligned_cols=157 Identities=16% Similarity=0.258 Sum_probs=83.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
|.|+++|.+|||||||+|+|++..+ +.+.- ..|.-+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~------------------------------------------ 37 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSL------------------------------------------ 37 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccce------------------------------------------
Confidence 7899999999999999999999875 22110 111111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh-cCCceEEEEEecCCCcc-cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI-EKPNCIILAISPANQDL-ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi-~~~~~iIL~v~~a~~d~-~~~~~ 191 (609)
.+.....+...++||||||+...... .. ..+......++ ..+|++|++++..+... .....
T Consensus 38 ------------~~~~~~~~~~~~~i~Dt~G~~~~~~~--~~---~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~ 100 (168)
T cd01897 38 ------------FVGHFDYKYLRWQVIDTPGLLDRPLE--ER---NTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQ 100 (168)
T ss_pred ------------eEEEEccCceEEEEEECCCcCCcccc--CC---chHHHHHHHHHHhccCcEEEEEeCCcccccchHHH
Confidence 11111112357899999998543211 11 01111111122 23577777665433221 11222
Q ss_pred HHHHHHhCCC--CCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccH
Q 007296 192 IKISREVDPR--GDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 192 l~l~~~~d~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
..+...+... +.|+|+|+||+|+.+... ... ...........++.+++.++.++++++..
T Consensus 101 ~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~-~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (168)
T cd01897 101 LSLFEEIKPLFKNKPVIVVLNKIDLLTFED-LSE-IEEEEELEGEEVLKISTLTEEGVDEVKNK 162 (168)
T ss_pred HHHHHHHHhhcCcCCeEEEEEccccCchhh-HHH-HHHhhhhccCceEEEEecccCCHHHHHHH
Confidence 2333333322 689999999999975432 111 11111112345667777777777665543
No 38
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.47 E-value=3.7e-13 Score=130.29 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=96.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccc--cccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGI--VTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
.+|.|+|+|.+|||||||+|+|+|.++.+..++. +|+.+
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~--------------------------------------- 63 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI--------------------------------------- 63 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE---------------------------------------
Confidence 7899999999999999999999997643322111 11110
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCc---eEEEEEecCCCccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPN---CIILAISPANQDLA 187 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~---~iIL~v~~a~~d~~ 187 (609)
..... ..++.||||||+.... .+....+.+..++..|++..+ .+++ +.+++....
T Consensus 64 -----------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~~ 121 (196)
T PRK00454 64 -----------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVL-LIDSRHPLK 121 (196)
T ss_pred -----------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEE-EEecCCCCC
Confidence 01111 2579999999976432 233445566778888888664 3444 334443333
Q ss_pred chHHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 188 TSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 188 ~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..+ ..+.+.+...+.++++|+||+|+.+.+.. ..+.+..........++.+++.++.++++....+....
T Consensus 122 ~~~-~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 122 ELD-LQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHH-HHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 222 22344445567889999999999865421 11111111111134566677776677666665554443
No 39
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.46 E-value=3.7e-13 Score=128.65 Aligned_cols=155 Identities=22% Similarity=0.312 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|.|+|+|.+|+||||++|+|+|..+.+.- +..|
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~----~~~~----------------------------------------- 51 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLART----SKTP----------------------------------------- 51 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccc----cCCC-----------------------------------------
Confidence 6899999999999999999999998642221 1111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCC---ceEEEEEecCCCcccch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKP---NCIILAISPANQDLATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~---~~iIL~v~~a~~d~~~~ 189 (609)
|.+ .+.....+ + .++.+|||||+.... .+......+..+...|++.. +++++++ +++.++...
T Consensus 52 --~~t----~~~~~~~~--~--~~~~liDtpG~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ii~vv-d~~~~~~~~ 117 (179)
T TIGR03598 52 --GRT----QLINFFEV--N--DGFRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLEKRENLKGVVLLM-DIRHPLKEL 117 (179)
T ss_pred --Ccc----eEEEEEEe--C--CcEEEEeCCCCcccc---CChhHHHHHHHHHHHHHHhChhhcEEEEEe-cCCCCCCHH
Confidence 000 00001111 1 378999999976532 23334456677777888753 5666654 555555544
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhcccccc--CCceeeEeeCChhhh
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKL--RYPWIGVVNRSQADI 247 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l--~~g~~~v~~~s~~~i 247 (609)
+. .+.+.+...+.|+++|+||+|+++.... ..+.++...... ...++.+++.+++|+
T Consensus 118 ~~-~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 118 DL-EMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred HH-HHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 43 4556666678999999999999854311 111111111111 125677777776664
No 40
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.46 E-value=5.5e-13 Score=125.98 Aligned_cols=158 Identities=15% Similarity=0.142 Sum_probs=95.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+.+|+|||.+|||||||++++++..+-+......+...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~------------------------------------------ 41 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF------------------------------------------ 41 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE------------------------------------------
Confidence 57999999999999999999999876332221111100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
....+.+.+ ....+.+|||||..+ ...+...|++.+|+++++++..+ ...-+....
T Consensus 42 ---------~~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~il~v~d~~~-~~s~~~~~~ 97 (168)
T cd01866 42 ---------GARMITIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITR-RETFNHLTS 97 (168)
T ss_pred ---------EEEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECCC-HHHHHHHHH
Confidence 011111211 123678999999533 25667889999999988765442 222222222
Q ss_pred HH---HHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 194 IS---REVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 194 l~---~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+. +.....+.|.++|.||+|+.++.....+.........+..|+.+++.+..++++.+....+.
T Consensus 98 ~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 98 WLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 33 33333468999999999997543211111211222345678888888888887766554433
No 41
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.46 E-value=6e-13 Score=129.24 Aligned_cols=166 Identities=20% Similarity=0.341 Sum_probs=96.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc--ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG--IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|++||.+|||||||+|+|+|.+.+.++.. .+|+-+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~-------------------------------------- 43 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKES-------------------------------------- 43 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceee--------------------------------------
Confidence 699999999999999999999986554431 2333321111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH--H
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD--A 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~--~ 191 (609)
..+ +...+++|||||+..... ..+++...+...+.....+++++++++ ++.. +...+ .
T Consensus 44 -------------~~~---~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~~illVi-~~~~-~t~~d~~~ 103 (196)
T cd01852 44 -------------AVW---DGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPHAFLLVV-PLGR-FTEEEEQA 103 (196)
T ss_pred -------------EEE---CCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCEEEEEEE-ECCC-cCHHHHHH
Confidence 001 234789999999987542 223344444444444456788877655 5554 44333 2
Q ss_pred HHHHHHh-CCC-CCceEEEecccCcCCCCCcHHHHHhcc-------ccccCCceeeEeeCC-----hhhhcccccHHHHH
Q 007296 192 IKISREV-DPR-GDRTFGVLTKIDLMDKGTDAVDILEGK-------SYKLRYPWIGVVNRS-----QADINKSVDMIAAR 257 (609)
Q Consensus 192 l~l~~~~-d~~-~~rti~VltK~D~~~~~~~~~~~l~~~-------~~~l~~g~~~v~~~s-----~~~i~~~~~~~~~~ 257 (609)
++..+++ .+. -.++++|+|+.|..... ...+++... ....+.-|+...+.. +..+.+++..++..
T Consensus 104 l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~ 182 (196)
T cd01852 104 VETLQELFGEKVLDHTIVLFTRGDDLEGG-TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESM 182 (196)
T ss_pred HHHHHHHhChHhHhcEEEEEECccccCCC-cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHH
Confidence 2333332 111 26899999999988654 233333222 111222355555554 24566666767666
Q ss_pred HHH
Q 007296 258 RRE 260 (609)
Q Consensus 258 ~~E 260 (609)
..|
T Consensus 183 ~~~ 185 (196)
T cd01852 183 VKE 185 (196)
T ss_pred HHh
Confidence 666
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=7.1e-13 Score=145.72 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=109.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|++||.+|||||||+|+|+|.++. .++..|++++
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~-----~~s~~~gtT~------------------------------------- 247 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERS-----VVDDVAGTTV------------------------------------- 247 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcc-----cccCCCCccC-------------------------------------
Confidence 5789999999999999999999998752 2222221111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHH-HHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENM-VRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~-v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+.+...+.. +...+.||||||+.+..... ...+....+ ...+++++|++|+|++ ++.....++
T Consensus 248 ----------d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~D-a~~~~s~~~- 311 (472)
T PRK03003 248 ----------DPVDSLIEL-GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLID-ASEPISEQD- 311 (472)
T ss_pred ----------CcceEEEEE-CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEe-CCCCCCHHH-
Confidence 111111111 22357899999986542211 112222322 3467899999988765 444444433
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhcccccc-CCceeeEeeCChhhhcccccHHHHHHHHHHHhccCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKL-RYPWIGVVNRSQADINKSVDMIAARRREHEYFKNSP 268 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~ 268 (609)
+.++..+...+.++|+|+||+|+.+.... ..+.+....... ...++.+++.++.++++++........
T Consensus 312 ~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~--------- 382 (472)
T PRK03003 312 QRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE--------- 382 (472)
T ss_pred HHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---------
Confidence 35666666678999999999999753321 111111111111 135666777777777776655543211
Q ss_pred CCCccccccChHHHHHHHHHHHH
Q 007296 269 EYGHLTDRMGSEYLGKVLSKHLE 291 (609)
Q Consensus 269 ~~~~~~~~~g~~~L~~~L~~~L~ 291 (609)
....++.+..|.+.|.+.+.
T Consensus 383 ---~~~~~i~t~~ln~~~~~~~~ 402 (472)
T PRK03003 383 ---SWDTRIPTGRLNAWLGELVA 402 (472)
T ss_pred ---HhcccCCHHHHHHHHHHHHH
Confidence 11235667766666666543
No 43
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=3.3e-13 Score=148.39 Aligned_cols=161 Identities=17% Similarity=0.254 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|.|+|||.+|||||||+|+|+|..+ ..+...|+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-----~~v~~~~gvT-------------------------------------- 73 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-----AVVEDVPGVT-------------------------------------- 73 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-----ccccCCCCCC--------------------------------------
Confidence 579999999999999999999999764 2222233211
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.+.+...+.. +...+.||||||+... ...+...+...+..|++.+|++|+|++.. ......+ .
T Consensus 74 ---------~d~~~~~~~~-~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~il~VvD~~-~~~s~~~-~ 136 (472)
T PRK03003 74 ---------RDRVSYDAEW-NGRRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTADAVLFVVDAT-VGATATD-E 136 (472)
T ss_pred ---------EeeEEEEEEE-CCcEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEECC-CCCCHHH-H
Confidence 1112211221 2236889999998642 12355677788889999999998876544 3333222 2
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.++..+...+.|+|+|+||+|+.....+..+. +.+++ ..+.+++.++.+++++++.+....
T Consensus 137 ~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 137 AVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred HHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 35555556789999999999986533222222 12222 235688888888888776655443
No 44
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.46 E-value=4.7e-13 Score=139.69 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-++.|++||.+|||||||||+|++......+...+|+.|+.-.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~------------------------------------- 198 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV------------------------------------- 198 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE-------------------------------------
Confidence 4689999999999999999999987532222233455553222
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+...+...++|+||||+...+..+ . .+.....++++++++++++++..+.+. ..++
T Consensus 199 ----------------v~~~~~~~~~i~D~PGli~~a~~~--~----gLg~~flrhierad~ll~VvD~s~~~~~~~~e~ 256 (329)
T TIGR02729 199 ----------------VRVDDGRSFVIADIPGLIEGASEG--A----GLGHRFLKHIERTRVLLHLIDISPLDGRDPIED 256 (329)
T ss_pred ----------------EEeCCceEEEEEeCCCcccCCccc--c----cHHHHHHHHHHhhCEEEEEEcCccccccCHHHH
Confidence 111223578999999998644321 1 122334456778998888775543311 1111
Q ss_pred ---HHHHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 191 ---AIKISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ---~l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+.+....+.+ ...|.++|+||+|+.+... ..+..+.....+...++.+++.+..++++++..+
T Consensus 257 l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I 324 (329)
T TIGR02729 257 YEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEGLDELLYAL 324 (329)
T ss_pred HHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHH
Confidence 2222233332 3689999999999976532 2222221111223446666766666666554433
No 45
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.46 E-value=6.1e-13 Score=142.43 Aligned_cols=159 Identities=19% Similarity=0.216 Sum_probs=89.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
++.|++||.+|||||||||+|++.+.-..+...+|+.|..-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~-------------------------------------- 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV-------------------------------------- 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE--------------------------------------
Confidence 569999999999999999999997631111123344441111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC---cccc--
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ---DLAT-- 188 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~---d~~~-- 188 (609)
+..++...++|+||||+...+..+ ..+ ......++++++++|++++.++. +...
T Consensus 200 ---------------v~~~~~~~~~laD~PGliega~~~--~gL----g~~fLrhier~~llI~VID~s~~~~~dp~e~~ 258 (424)
T PRK12297 200 ---------------VETDDGRSFVMADIPGLIEGASEG--VGL----GHQFLRHIERTRVIVHVIDMSGSEGRDPIEDY 258 (424)
T ss_pred ---------------EEEeCCceEEEEECCCCccccccc--chH----HHHHHHHHhhCCEEEEEEeCCccccCChHHHH
Confidence 122224578999999998643321 111 12233456679999887765432 1111
Q ss_pred hHHHHHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 189 SDAIKISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 189 ~~~l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..+.+.+..+++ .+.|.++|+||+|+.+......++.+ .+...++.+++.+.+++++++..+.
T Consensus 259 ~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~----~l~~~i~~iSA~tgeGI~eL~~~L~ 323 (424)
T PRK12297 259 EKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKE----KLGPKVFPISALTGQGLDELLYAVA 323 (424)
T ss_pred HHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHH----HhCCcEEEEeCCCCCCHHHHHHHHH
Confidence 112223333333 46899999999997432211222211 1223456666666666665554443
No 46
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.45 E-value=5.2e-13 Score=124.74 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=89.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|++|||||||+++++|.++.+......|.-+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 39 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLS------------------------------------------ 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEE------------------------------------------
Confidence 68999999999999999999988633211111111100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~~l~ 193 (609)
..+.+.+ ....+.+|||||..+ ...++..+++.++++|+++...+.. +.. ..++.
T Consensus 40 ---------~~~~~~~-~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~ 96 (161)
T cd01861 40 ---------KTMYLED-KTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWID 96 (161)
T ss_pred ---------EEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHH
Confidence 0111111 113588999999543 2567888999999988876543311 111 12333
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
......+.+.|+++|+||+|+.+......+...........+++.+++....++++....+
T Consensus 97 ~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i 157 (161)
T cd01861 97 DVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKI 157 (161)
T ss_pred HHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 3333333368999999999996443222222221222334667777777777776655443
No 47
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.45 E-value=1.1e-12 Score=123.43 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=89.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.++|+++|.+++|||||+|+|+|..+.+.+....|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRD------------------------------------------ 39 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccC------------------------------------------
Confidence 57899999999999999999999865322221111100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.....+. .+..++++|||||+...... ...+..........++..+|++++++. ++..... ....
T Consensus 40 ----------~~~~~~~-~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~d-~~~~~~~-~~~~ 104 (174)
T cd01895 40 ----------SIDVPFE-YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVID-ATEGITE-QDLR 104 (174)
T ss_pred ----------ceeeEEE-ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEEe-CCCCcch-hHHH
Confidence 0000011 12346889999998764321 111111111223456788998888764 4444333 3334
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcH----HHHHhccccc-cCCceeeEeeCChhhhcccc
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDA----VDILEGKSYK-LRYPWIGVVNRSQADINKSV 251 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~----~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~ 251 (609)
+.+.+...+.+.++|+||+|+.+..... .+.+...... ....++.+++.++.++++..
T Consensus 105 ~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 105 IAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLF 167 (174)
T ss_pred HHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHH
Confidence 5555555678999999999998653211 1222211100 11346666666666655443
No 48
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.45 E-value=4.9e-13 Score=125.93 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=94.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-+|+++|+++||||||++++.+..|.+... ..+...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~-~t~~~~------------------------------------------- 38 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP-HTIGVE------------------------------------------- 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-ccccee-------------------------------------------
Confidence 479999999999999999999887622211 111000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~l 192 (609)
+ ....+.+.+ ....+.+|||||.... ..+...|+++++++|++++..+.. -....++
T Consensus 39 -----~--~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~ 97 (166)
T cd04122 39 -----F--GTRIIEVNG-QKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWL 97 (166)
T ss_pred -----E--EEEEEEECC-EEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 000111211 1236789999996432 566788999999999987654422 1112344
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
...+.....+.++++|.||+|+..+.....+.........+..|+.+++.++.++++.+...
T Consensus 98 ~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 98 TDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 44444444568899999999997554211111111122234678888888888887765433
No 49
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.45 E-value=5.2e-13 Score=125.62 Aligned_cols=157 Identities=15% Similarity=0.219 Sum_probs=94.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+|+|.+|||||||++++++..| +... .|+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~-~~~~-----~~t~---------------------------------------- 35 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY-TESY-----ISTI---------------------------------------- 35 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCcc----------------------------------------
Confidence 35899999999999999999998876 2111 1100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~ 191 (609)
+.......+.+.+ ....+.+|||||..+. ..+...|+++++++|++++..+.+ .....+
T Consensus 36 -----~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~ 96 (166)
T cd01869 36 -----GVDFKIRTIELDG-KTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQW 96 (166)
T ss_pred -----ceeEEEEEEEECC-EEEEEEEEECCCcHhH-------------HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHH
Confidence 0000000111111 1235789999995442 556778999999999987654422 111234
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+...+.....+.|.++|.||+|+........+.........+.+|+.+++..+.++++.+..+.
T Consensus 97 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 97 LQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred HHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 4444444445689999999999865432111111112223456788888888888877665444
No 50
>PRK04213 GTP-binding protein; Provisional
Probab=99.44 E-value=7.9e-13 Score=128.73 Aligned_cols=163 Identities=20% Similarity=0.285 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..+.|+++|.+|||||||+|+|+|..+ +.+. .|+..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~-----~~~~t~------------------------------------- 44 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGK-----RPGVTR------------------------------------- 44 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCC-----CCceee-------------------------------------
Confidence 578999999999999999999999874 3221 121111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc-C---CceEEEEEecCCCc---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE-K---PNCIILAISPANQD--- 185 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~---~~~iIL~v~~a~~d--- 185 (609)
+...+.. .++++|||||+...... ++...+.++.++..|+. . .+.+++++.+....
T Consensus 45 ----------~~~~~~~-----~~~~l~Dt~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~ 107 (201)
T PRK04213 45 ----------KPNHYDW-----GDFILTDLPGFGFMSGV--PKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEII 107 (201)
T ss_pred ----------CceEEee-----cceEEEeCCcccccccc--CHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccc
Confidence 1111111 16899999997443221 23335566777777775 3 35555555432211
Q ss_pred --cc----chHHHHHHHHhCCCCCceEEEecccCcCCCCCc-HHHHHhcccc--cc---CCceeeEeeCChhhhcccccH
Q 007296 186 --LA----TSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD-AVDILEGKSY--KL---RYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 186 --~~----~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~--~l---~~g~~~v~~~s~~~i~~~~~~ 253 (609)
+. .+....+...+...+.|+++|+||+|+.+...+ ..++.+.... +. ...++.+++.++ ++++++..
T Consensus 108 ~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~ 186 (201)
T PRK04213 108 ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEA 186 (201)
T ss_pred cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHH
Confidence 00 011123344444457899999999999754311 1222211111 00 013567777777 77766655
Q ss_pred HHH
Q 007296 254 IAA 256 (609)
Q Consensus 254 ~~~ 256 (609)
+..
T Consensus 187 l~~ 189 (201)
T PRK04213 187 IRK 189 (201)
T ss_pred HHH
Confidence 543
No 51
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.44 E-value=8.5e-13 Score=123.59 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=64.8
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHH-HHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIK-ISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~-l~~~~d~~~~rti~VltK 211 (609)
..+.+|||||..+. ..+...|++.+++++++++..+..- ....+.. +.+.....+.|+++|+||
T Consensus 50 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 116 (164)
T cd04145 50 AILDILDTAGQEEF-------------SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116 (164)
T ss_pred EEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 46789999996543 5567789999999998875543210 0111222 223334457899999999
Q ss_pred cCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 212 IDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+|+.+......+.........+..|+.+++.++.++++.+..+
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 117 ADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred ccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 9997543211111111122334567888888877777655433
No 52
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=7.5e-13 Score=144.51 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=96.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+.++|+|+|.+|+|||||+|+|+|.+..+.+ ..|.+++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-----~~~gtt~------------------------------------- 209 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-----DIAGTTR------------------------------------- 209 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec-----CCCCceE-------------------------------------
Confidence 4689999999999999999999998753222 2221111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.+...+. .+...+.+|||||+.+..... ..++.....-...+++.+|++|+++ ++..+...++.
T Consensus 210 ----------~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~ilVi-D~~~~~~~~~~- 274 (435)
T PRK00093 210 ----------DSIDTPFE-RDGQKYTLIDTAGIRRKGKVT--EGVEKYSVIRTLKAIERADVVLLVI-DATEGITEQDL- 274 (435)
T ss_pred ----------EEEEEEEE-ECCeeEEEEECCCCCCCcchh--hHHHHHHHHHHHHHHHHCCEEEEEE-eCCCCCCHHHH-
Confidence 11111121 233568999999987643321 1122222223456889999998865 55555555543
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhcccccc-CCceeeEeeCChhhhcccccHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKL-RYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.+++.+...+.++++|+||+|+.+... ...+.+....... ..+++.+++..+.++++.++..
T Consensus 275 ~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i 339 (435)
T PRK00093 275 RIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAI 339 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHH
Confidence 577777777899999999999984321 1122221111111 1345555665566665544433
No 53
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.44 E-value=5.6e-13 Score=125.02 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=91.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||++++++.++.+ . ..|+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~-----~~~t------------------------------------------- 32 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-K-----YLPT------------------------------------------- 32 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-C-----CCCc-------------------------------------------
Confidence 69999999999999999999988622 1 1110
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~ 193 (609)
.++......+.+.+ ....+.+|||||.... ..+...|+++++++|++++..+... ....++.
T Consensus 33 --~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~ 96 (168)
T cd04119 33 --IGIDYGVKKVSVRN-KEVRVNFFDLSGHPEY-------------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLK 96 (168)
T ss_pred --cceeEEEEEEEECC-eEEEEEEEECCccHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHH
Confidence 00000011111211 2347889999996432 4566788999999998875543211 1123333
Q ss_pred HHHH-hCC----CCCceEEEecccCcCCCCC-cHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 194 ISRE-VDP----RGDRTFGVLTKIDLMDKGT-DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 194 l~~~-~d~----~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
.+.. ..+ .+.|+++|+||+|+.++.. ...+... .....+..|+.+++.++.++++.+..+.
T Consensus 97 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 97 EMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred HHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 3333 222 5689999999999974322 1111110 1122235688888888877776665443
No 54
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3.8e-12 Score=133.26 Aligned_cols=144 Identities=29% Similarity=0.335 Sum_probs=94.3
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCC
Q 007296 13 RACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLP 92 (609)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~ 92 (609)
++.+-+........+ -.-++|||+|.||+|||||||+|+..+. .+|+..|.+++
T Consensus 251 ~v~s~l~~~~~~e~l----q~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~GTTR----------------- 304 (531)
T KOG1191|consen 251 DVLSHLNKADEIERL----QSGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVPGTTR----------------- 304 (531)
T ss_pred HHHHHHHhhhhHHHh----hcCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCCCcch-----------------
Confidence 566655533222233 2469999999999999999999999988 78888885555
Q ss_pred CCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCC
Q 007296 93 RKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKP 172 (609)
Q Consensus 93 ~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~ 172 (609)
|.|...+. ++...+.|+||.|+.+.... .++..--+-.++-++.+
T Consensus 305 ------------------------------Daiea~v~-~~G~~v~L~DTAGiRe~~~~----~iE~~gI~rA~k~~~~a 349 (531)
T KOG1191|consen 305 ------------------------------DAIEAQVT-VNGVPVRLSDTAGIREESND----GIEALGIERARKRIERA 349 (531)
T ss_pred ------------------------------hhheeEee-cCCeEEEEEeccccccccCC----hhHHHhHHHHHHHHhhc
Confidence 34444444 66778999999999882111 12222234567788899
Q ss_pred ceEEEEEecCCCcccchHHHHHHHHhCCC------------CCceEEEecccCcCCCCC
Q 007296 173 NCIILAISPANQDLATSDAIKISREVDPR------------GDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 173 ~~iIL~v~~a~~d~~~~~~l~l~~~~d~~------------~~rti~VltK~D~~~~~~ 219 (609)
|.|+++|.+...+. .++ +.+++.+... ..|.|.|.||.|+..+..
T Consensus 350 dvi~~vvda~~~~t-~sd-~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 350 DVILLVVDAEESDT-ESD-LKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred CEEEEEeccccccc-ccc-hHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 98877665533332 222 2233322221 268899999999987743
No 55
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.43 E-value=1.3e-12 Score=127.08 Aligned_cols=162 Identities=15% Similarity=0.156 Sum_probs=93.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|++|||||||++++++.+| |....+.+.......
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~---------------------------------------- 40 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRP---------------------------------------- 40 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCcccccccee----------------------------------------
Confidence 689999999999999999999876 332222111110000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH---HH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~---~l 192 (609)
.+.+ ......+.||||||....+.. ...........+++.+|++|+|++..+.+ +... +.
T Consensus 41 ----------~i~~-~~~~~~l~i~Dt~G~~~~~~~-----~~~e~~~~~~~~~~~ad~iilv~D~~~~~-S~~~~~~~~ 103 (198)
T cd04142 41 ----------AVVL-SGRVYDLHILDVPNMQRYPGT-----AGQEWMDPRFRGLRNSRAFILVYDICSPD-SFHYVKLLR 103 (198)
T ss_pred ----------EEEE-CCEEEEEEEEeCCCcccCCcc-----chhHHHHHHHhhhccCCEEEEEEECCCHH-HHHHHHHHH
Confidence 0111 111246789999998654311 12222334556789999998877654321 1111 12
Q ss_pred HHHHHh---CCCCCceEEEecccCcCCCCCcHHHHHhcc-ccccCCceeeEeeCChhhhcccccHHH
Q 007296 193 KISREV---DPRGDRTFGVLTKIDLMDKGTDAVDILEGK-SYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 193 ~l~~~~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+.+... .+.+.|+++|.||+|+.+......+.+... ....+.+|+.+++.++.++++++....
T Consensus 104 ~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~ 170 (198)
T cd04142 104 QQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELL 170 (198)
T ss_pred HHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 222222 245789999999999965432112222111 112357889999998888877665443
No 56
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.43 E-value=8.9e-13 Score=123.31 Aligned_cols=154 Identities=17% Similarity=0.173 Sum_probs=89.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|++|||||||++++++..| +.....+++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~------------------------------------------- 37 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDS------------------------------------------- 37 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhh-------------------------------------------
Confidence 4799999999999999999998765 22111111000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~l 192 (609)
.. ..+.+. .....+.||||||..+. ..+...|++++++++++++..+.. +. ...+.
T Consensus 38 ------~~--~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~ 95 (163)
T cd04136 38 ------YR--KQIEVD-GQQCMLEILDTAGTEQF-------------TAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLR 95 (163)
T ss_pred ------EE--EEEEEC-CEEEEEEEEECCCcccc-------------chHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 011111 12246789999997653 456678899999998877543321 11 11222
Q ss_pred HHHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 193 KISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
..+... ...+.|+++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+
T Consensus 96 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 96 EQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred HHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 223222 33468999999999987543211111111111223567888888877777655443
No 57
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.43 E-value=7.3e-13 Score=144.39 Aligned_cols=157 Identities=22% Similarity=0.290 Sum_probs=102.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
.|++||.+|||||||+|+|+|... .++...|.+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~g~t~---------------------------------------- 35 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-----AIVSDTPGVTR---------------------------------------- 35 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-----ceecCCCCccc----------------------------------------
Confidence 489999999999999999999864 22222332111
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 195 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~ 195 (609)
+.....+.. +...+.+|||||+... ...+.+.+...+..+++.+|+++++++ +.......+ ..++
T Consensus 36 -------d~~~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~vvD-~~~~~~~~d-~~i~ 100 (429)
T TIGR03594 36 -------DRKYGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFVVD-GREGLTPED-EEIA 100 (429)
T ss_pred -------CceEEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEEEe-CCCCCCHHH-HHHH
Confidence 111111111 2236899999998642 234667788889999999999888664 444444333 3456
Q ss_pred HHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccHHHHH
Q 007296 196 REVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 196 ~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+.+...+.|+++|+||+|+.+......+. ..++. .++.+++..+.+++++++.....
T Consensus 101 ~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~~i~~~ 158 (429)
T TIGR03594 101 KWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLDAILEL 158 (429)
T ss_pred HHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence 66656689999999999997654333222 23444 46777777777777666555443
No 58
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.43 E-value=1.2e-12 Score=115.79 Aligned_cols=115 Identities=25% Similarity=0.369 Sum_probs=73.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
+|+|+|.+|||||||+|+|+|.+..+.+.. .+|+.+.. .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~-~--------------------------------------- 40 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY-G--------------------------------------- 40 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-E---------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-e---------------------------------------
Confidence 689999999999999999999754333332 44544411 1
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
....+...+.|+||||+...... ....+. ...+.+.+..+|.+|+++. ++... .....++
T Consensus 41 --------------~~~~~~~~~~~vDtpG~~~~~~~---~~~~~~-~~~~~~~~~~~d~ii~vv~-~~~~~-~~~~~~~ 100 (116)
T PF01926_consen 41 --------------QFEYNNKKFILVDTPGINDGESQ---DNDGKE-IRKFLEQISKSDLIIYVVD-ASNPI-TEDDKNI 100 (116)
T ss_dssp --------------EEEETTEEEEEEESSSCSSSSHH---HHHHHH-HHHHHHHHCTESEEEEEEE-TTSHS-HHHHHHH
T ss_pred --------------eeeeceeeEEEEeCCCCcccchh---hHHHHH-HHHHHHHHHHCCEEEEEEE-CCCCC-CHHHHHH
Confidence 01112346689999999864321 001122 2334555588999888776 54422 2334457
Q ss_pred HHHhCCCCCceEEEecc
Q 007296 195 SREVDPRGDRTFGVLTK 211 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK 211 (609)
.+++. .+.|+++|+||
T Consensus 101 ~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 101 LRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHH-TTSEEEEEEES
T ss_pred HHHHh-cCCCEEEEEcC
Confidence 77776 78999999998
No 59
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.42 E-value=1.4e-12 Score=122.32 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=90.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|++|||||||++++++..+ +.....++....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~------------------------------------------- 37 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSY------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhE-------------------------------------------
Confidence 699999999999999999999875 222111110000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~ 193 (609)
...+.+ ......+.+|||||..+. ..+...|+++++++|++++..+... ....+..
T Consensus 38 --------~~~~~~-~~~~~~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (164)
T smart00173 38 --------RKQIEI-DGEVCLLDILDTAGQEEF-------------SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFRE 95 (164)
T ss_pred --------EEEEEE-CCEEEEEEEEECCCcccc-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000111 112246779999997653 4567788999999988765433210 0112222
Q ss_pred -HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 194 -ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 194 -l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+.+.......|+++|+||+|+.+......+.........+.+|+.+++.++.++++.+..+.
T Consensus 96 ~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 96 QILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred HHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 22333334679999999999976432111111111122346788888888888777665443
No 60
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=1.1e-12 Score=143.09 Aligned_cols=158 Identities=23% Similarity=0.290 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|.|++||.+|||||||+|+|+|... .++...|.+++
T Consensus 1 ~~~I~ivG~~~vGKStL~n~l~~~~~-----~~v~~~~~~t~-------------------------------------- 37 (435)
T PRK00093 1 KPVVAIVGRPNVGKSTLFNRLTGKRD-----AIVADTPGVTR-------------------------------------- 37 (435)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeeCCCCCCcc--------------------------------------
Confidence 48999999999999999999999864 12222221111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
+...-.+.. +...+.+|||||+... ..+....+...+..++..+|++|++++. .......+. .
T Consensus 38 ---------d~~~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vvd~-~~~~~~~~~-~ 100 (435)
T PRK00093 38 ---------DRIYGEAEW-LGREFILIDTGGIEPD-----DDGFEKQIREQAELAIEEADVILFVVDG-RAGLTPADE-E 100 (435)
T ss_pred ---------cceEEEEEE-CCcEEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEEC-CCCCCHHHH-H
Confidence 111111111 2257899999999762 1225566777788899999999887654 333333322 3
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCc-eeeEeeCChhhhcccccHHHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP-WIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+++.+...+.|+|+|+||+|..+......+. ..++.+ ++.+++..+.++++++..+..
T Consensus 101 ~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 101 IAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred HHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 4444444589999999999975432222222 233443 677888888887776655443
No 61
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.42 E-value=1.1e-12 Score=127.71 Aligned_cols=156 Identities=12% Similarity=0.180 Sum_probs=96.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+.+||||||++++.+..| +.... ||.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~-----~Ti------------------------------------------ 33 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACK-----SGV------------------------------------------ 33 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCC-----Ccc------------------------------------------
Confidence 799999999999999999998776 21111 100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~ 193 (609)
+.+|... .+.+.+ ....+.+|||||..+. ..+...|+++++++|+|++..+.+ + ....|+.
T Consensus 34 -~~~~~~~--~i~~~~-~~v~l~iwDtaGqe~~-------------~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~ 96 (202)
T cd04120 34 -GVDFKIK--TVELRG-KKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLPKWMK 96 (202)
T ss_pred -eeEEEEE--EEEECC-EEEEEEEEeCCCchhh-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 0011111 111211 2357889999997543 677889999999999977554322 1 1123555
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccc-cCCceeeEeeCChhhhcccccHHHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYK-LRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++.....+.++|+|.||+|+.+......+........ .+..|+.+++.++.++++.+.....
T Consensus 97 ~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 97 MIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred HHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 55655566789999999999965332111111111111 1356788888888888776655443
No 62
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.41 E-value=2.2e-12 Score=148.40 Aligned_cols=161 Identities=18% Similarity=0.248 Sum_probs=106.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.+|.|++||.+|+|||||+|+|+|..+ .++...|++++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pGvT~------------------------------------- 311 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPGVTR------------------------------------- 311 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCeeE-------------------------------------
Confidence 479999999999999999999999865 34444454333
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.+..... .+...+.+|||||+... .+++...+...+..|++.+|++|+|++ +...+...+.
T Consensus 312 ----------d~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~iL~VvD-a~~~~~~~d~- 373 (712)
T PRK09518 312 ----------DRVSYDAE-WAGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADAVVFVVD-GQVGLTSTDE- 373 (712)
T ss_pred ----------EEEEEEEE-ECCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCEEEEEEE-CCCCCCHHHH-
Confidence 11111111 12346889999998742 223666777888889999999988765 4444433332
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.+++.+...+.|+|+|+||+|+........+.. .+++ ..+.+++..+.|++++++.+....
T Consensus 374 ~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 374 RIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFW-----KLGLGEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred HHHHHHHhcCCCEEEEEECcccccchhhHHHHH-----HcCCCCeEEEECCCCCCchHHHHHHHHhc
Confidence 466666677899999999999865432222221 1222 134677778888887776655443
No 63
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.41 E-value=1.4e-12 Score=121.94 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=93.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||++++++..+-+......+..
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--------------------------------------------- 36 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE--------------------------------------------- 36 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee---------------------------------------------
Confidence 68999999999999999999887632221111100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc--chHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~--~~~~l~ 193 (609)
.....+.+. .....+.+|||||.... ..+...++++++++|++++..+..-. ...++.
T Consensus 37 ------~~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 96 (161)
T cd04113 37 ------FGSKIIRVG-GKRVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLS 96 (161)
T ss_pred ------EEEEEEEEC-CEEEEEEEEECcchHHH-------------HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000111121 12246789999996432 55678889999999887765442211 123333
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
..+.....+.++++|+||+|+........+............|+.+++.+..++++.+...
T Consensus 97 ~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 97 DARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred HHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 3444445578999999999997643221111111222334678888888888877665543
No 64
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.41 E-value=1.1e-12 Score=129.19 Aligned_cols=158 Identities=18% Similarity=0.155 Sum_probs=94.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|++||++|||||||++++++..| +... .|+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~-----~~T~~----------------------------------------- 34 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSY-----KQTIG----------------------------------------- 34 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCC-----CCcee-----------------------------------------
Confidence 689999999999999999998875 2221 11110
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~ 193 (609)
+......+.+.+.....+.||||||.... ..+...|++++|++|++++..+... ....|..
T Consensus 35 ----~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------------~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~ 97 (215)
T cd04109 35 ----LDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------------GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYS 97 (215)
T ss_pred ----EEEEEEEEEeCCCCEEEEEEEECCCcHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00000111122212346789999995432 5677889999999999876543211 1122444
Q ss_pred HHHHhCC---CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 194 ISREVDP---RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 194 l~~~~d~---~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
.+....+ .+.++++|.||+|+.+......+.........+.+|+.+++.++.++++.+..+...
T Consensus 98 ~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~ 164 (215)
T cd04109 98 MVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAE 164 (215)
T ss_pred HHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444332 345789999999997533211111111112234568888888888888777655543
No 65
>COG2262 HflX GTPases [General function prediction only]
Probab=99.41 E-value=3.7e-12 Score=131.51 Aligned_cols=189 Identities=16% Similarity=0.238 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccc
Q 007296 6 TLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEY 85 (609)
Q Consensus 6 ~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 85 (609)
.-|++|+.-+..+-......+-.......|.|++||..|||||||+|+|+|...+-.+.-+.|=-|++-+
T Consensus 164 ~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~---------- 233 (411)
T COG2262 164 RRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR---------- 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE----------
Confidence 3455566555555432111111112247999999999999999999999998863344444554443222
Q ss_pred hhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHH
Q 007296 86 AEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMV 165 (609)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v 165 (609)
+.-++...+.+-||-|+++ +-|..+.+.+++.
T Consensus 234 -------------------------------------------~~l~~g~~vlLtDTVGFI~----~LP~~LV~AFksT- 265 (411)
T COG2262 234 -------------------------------------------IELGDGRKVLLTDTVGFIR----DLPHPLVEAFKST- 265 (411)
T ss_pred -------------------------------------------EEeCCCceEEEecCccCcc----cCChHHHHHHHHH-
Confidence 3334456789999999998 3466677777664
Q ss_pred HHhhcCCceEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCC
Q 007296 166 RSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRS 243 (609)
Q Consensus 166 ~~yi~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 243 (609)
..-..++|.+++||+.++.++.. ....++..++.-...|+|.|+||+|++.... ....+.... . ..+.+++.+
T Consensus 266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~~~---~-~~v~iSA~~ 340 (411)
T COG2262 266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELERGS---P-NPVFISAKT 340 (411)
T ss_pred HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhhcC---C-CeEEEEecc
Confidence 34567899998877665554333 2345677888878899999999999986653 112211101 1 356677777
Q ss_pred hhhhcccccHHHHH
Q 007296 244 QADINKSVDMIAAR 257 (609)
Q Consensus 244 ~~~i~~~~~~~~~~ 257 (609)
+.+++.+...+...
T Consensus 341 ~~gl~~L~~~i~~~ 354 (411)
T COG2262 341 GEGLDLLRERIIEL 354 (411)
T ss_pred CcCHHHHHHHHHHH
Confidence 77776666555443
No 66
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.40 E-value=1.8e-12 Score=121.24 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=90.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|.++||||||++++++..+-+......+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~-------------------------------------------- 37 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDF-------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEE--------------------------------------------
Confidence 689999999999999999999875211111111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH---HH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~---~l 192 (609)
....+.+. .....+.+||+||... ...+...+++.+|++|+++...+. .+.+. ++
T Consensus 38 -------~~~~~~~~-~~~~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~l 95 (164)
T smart00175 38 -------KTKTIEVD-GKRVKLQIWDTAGQER-------------FRSITSSYYRGAVGALLVYDITNR-ESFENLKNWL 95 (164)
T ss_pred -------EEEEEEEC-CEEEEEEEEECCChHH-------------HHHHHHHHhCCCCEEEEEEECCCH-HHHHHHHHHH
Confidence 00111111 1123678999999543 245678889999999998765432 22222 33
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.........+.|+++|+||+|+........+.........+..|+.++...+.++++.+.....
T Consensus 96 ~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 96 KELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred HHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 3222333347899999999998753221111111111233455777777777777666555443
No 67
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.40 E-value=2.1e-12 Score=120.33 Aligned_cols=153 Identities=14% Similarity=0.186 Sum_probs=90.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|++|||||||++++++..|. .....++. ..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~-~~------------------------------------------ 37 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIE-DS------------------------------------------ 37 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcch-he------------------------------------------
Confidence 47999999999999999999988762 11111110 00
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~~l 192 (609)
+ ...+.+. .....+.+|||||..+. ..+...|++.+++++++++..+.. +.. ..+.
T Consensus 38 -----~---~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~ 95 (162)
T cd04138 38 -----Y---RKQVVID-GETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYR 95 (162)
T ss_pred -----E---EEEEEEC-CEEEEEEEEECCCCcch-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 0001111 11234778999996542 567788999999988876543321 111 1122
Q ss_pred H-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 193 K-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
. +.+.....+.|+++|+||+|+.+......+. ......++..|+.+++.++.|+++.+...
T Consensus 96 ~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 96 EQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQG-QDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred HHHHHhcCCCCCCEEEEEECcccccceecHHHH-HHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 2 2333344578999999999997643221111 11112234568888888888877765443
No 68
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=2.2e-12 Score=148.49 Aligned_cols=163 Identities=18% Similarity=0.256 Sum_probs=95.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|+|+++|.+|||||||+|+|+|.++ .+++..|.+++
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-----~~v~~~~gtT~------------------------------------- 486 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEER-----AVVNDLAGTTR------------------------------------- 486 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc-----cccCCCCCCCc-------------------------------------
Confidence 579999999999999999999999875 22232331111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHH-HHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENM-VRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~-v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+.+...+.. +..++.||||||+.+..... ...+....+ ...+++.+|++++|+ +++.....++
T Consensus 487 ----------d~~~~~~~~-~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilVi-Dat~~~s~~~- 550 (712)
T PRK09518 487 ----------DPVDEIVEI-DGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLF-DASQPISEQD- 550 (712)
T ss_pred ----------CcceeEEEE-CCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEE-ECCCCCCHHH-
Confidence 111111111 23468899999987533221 111222222 356788999998765 5555554444
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhccccccCCce---eeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKLRYPW---IGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~---~~v~~~s~~~i~~~~~~~~ 255 (609)
..++..+...+.++|+|+||+|+.+... ...+.+..... ..+| +.+++.++.++++++....
T Consensus 551 ~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~--~~~~~~ii~iSAktg~gv~~L~~~i~ 617 (712)
T PRK09518 551 LKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFD--RVTWARRVNLSAKTGWHTNRLAPAMQ 617 (712)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhcc--CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3466666667899999999999986432 11111111101 1233 4556666666666555443
No 69
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.39 E-value=2.3e-12 Score=120.47 Aligned_cols=154 Identities=18% Similarity=0.228 Sum_probs=91.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|.+|||||||++++++..+ +.+....+.-.. ..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~-~~---------------------------------------- 39 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSY-RK---------------------------------------- 39 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhE-EE----------------------------------------
Confidence 689999999999999999998875 332221111000 00
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~ 193 (609)
..........+.+|||||.... ..+...+++.+++++++++..+.+ + ....+..
T Consensus 40 -----------~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (164)
T cd04139 40 -----------KVVLDGEDVQLNILDTAGQEDY-------------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFRE 95 (164)
T ss_pred -----------EEEECCEEEEEEEEECCChhhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0011112235789999996543 456677899999998876543221 0 0122222
Q ss_pred -HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 194 -ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 194 -l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+.+.....+.|.++|+||+|+.+...............++.+|+.+++.++.++++.+..+.
T Consensus 96 ~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 96 QILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred HHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 33333345799999999999976322111111111223446788888888888877665443
No 70
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.39 E-value=2.1e-12 Score=121.97 Aligned_cols=156 Identities=15% Similarity=0.250 Sum_probs=90.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||++++++..+-+.....++..+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~------------------------------------------- 38 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEE-------------------------------------------
Confidence 6999999999999999999998752221111110000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---HHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~---~~l 192 (609)
...+.+.+ ....+.+||+||.... ..+...|+++++++|++++..+. .... .+.
T Consensus 39 --------~~~~~~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~ 95 (172)
T cd01862 39 --------TKEVTVDD-KLVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNP-KSFESLDSWR 95 (172)
T ss_pred --------EEEEEECC-EEEEEEEEeCCChHHH-------------HhHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHH
Confidence 00111111 2235789999996432 45677899999999887754332 1111 121
Q ss_pred H-HHHHhC---CCCCceEEEecccCcCCCCCcHHHHHhccccccC-CceeeEeeCChhhhcccccHHHHH
Q 007296 193 K-ISREVD---PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLR-YPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 193 ~-l~~~~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
. +..... +.+.|+++|+||+|+.++.....+.........+ ..++.+++..+.|+++.+..+...
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 1 223333 3478999999999998432211111111111222 567888888888777766555443
No 71
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.39 E-value=2.9e-12 Score=120.14 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=64.1
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEecc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK 211 (609)
...+.+|||||... ...+...+++++|+++++++..+.+... ..|+....... .+.|.++|+||
T Consensus 51 ~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK 116 (164)
T cd04101 51 TVELFIFDSAGQEL-------------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNK 116 (164)
T ss_pred EEEEEEEECCCHHH-------------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 35788999999543 2567788999999998877543321111 22333333333 35899999999
Q ss_pred cCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 212 IDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+|+.+................+..|+.+++..+.++++.+...
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 117 MDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred cccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9997543211111111112234567778777777776655443
No 72
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.39 E-value=1.6e-12 Score=123.25 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=94.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|++||+++||||||++++++..| +........
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~~t~~---------------------------------------------- 34 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYKATIG---------------------------------------------- 34 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcee----------------------------------------------
Confidence 699999999999999999999876 322211110
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~ 193 (609)
.......+.+.+ ....+.||||||..+. ..+...|++++|++++|++..+.+ +. ...|+.
T Consensus 35 ----~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~ 96 (170)
T cd04108 35 ----VDFEMERFEILG-VPFSLQLWDTAGQERF-------------KCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLE 96 (170)
T ss_pred ----eEEEEEEEEECC-EEEEEEEEeCCChHHH-------------HhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 000011111211 1246889999997543 556788999999998877553321 11 122333
Q ss_pred HH-HHhCCCCCceEEEecccCcCCCCC-c-HHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHH
Q 007296 194 IS-REVDPRGDRTFGVLTKIDLMDKGT-D-AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 194 l~-~~~d~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
.. +...+...++++|.||.|+.+... . ..+........++..|+.+++.++.++++.+..+.+...
T Consensus 97 ~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 97 DALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred HHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22 233454467899999999865432 1 111111112233456788888888887777666655443
No 73
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=5.1e-13 Score=123.68 Aligned_cols=164 Identities=21% Similarity=0.222 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..-.||++|+||+||||||++..-..| -+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~f-d~-------------------------------------------------- 49 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKF-DN-------------------------------------------------- 49 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhh-cc--------------------------------------------------
Confidence 568999999999999999999987766 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCC--CcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPAN--QDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~--~d~~~~~ 190 (609)
..+.+-|+..-.-.+.+.+. ...|.+|||+|..++ +.++..|++++.++|+|.+-.+ .-..++.
T Consensus 50 ~YqATIGiDFlskt~~l~d~-~vrLQlWDTAGQERF-------------rslipsY~Rds~vaviVyDit~~~Sfe~t~k 115 (221)
T KOG0094|consen 50 TYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVIVYDITDRNSFENTSK 115 (221)
T ss_pred cccceeeeEEEEEEEEEcCc-EEEEEEEecccHHHH-------------hhhhhhhccCCeEEEEEEeccccchHHHHHH
Confidence 11112222222222233332 457899999997664 8999999999999887754333 3344556
Q ss_pred HHHHHHHhCCC-CCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHH
Q 007296 191 AIKISREVDPR-GDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREH 261 (609)
Q Consensus 191 ~l~l~~~~d~~-~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~ 261 (609)
|++-++.-... +..+++|.||-|+.++..-..+.-+.....++--|..++...+.++.+++..+.+...+.
T Consensus 116 Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 116 WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 77655544433 467788999999998753222221122334455677888888888887776666655443
No 74
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.39 E-value=1.6e-12 Score=121.50 Aligned_cols=102 Identities=21% Similarity=0.283 Sum_probs=58.9
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--HHHHHHHHhCCCCCceEEEecc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~~l~l~~~~d~~~~rti~VltK 211 (609)
...+.+|||||..+. ......++..+|+++++++. ..++..+ +.+.+++... ..++++|+||
T Consensus 50 ~~~~~~~DtpG~~~~-------------~~~~~~~~~~ad~ii~V~d~-~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHEKF-------------IKNMLAGAGGIDLVLLVVAA-DEGIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChHHH-------------HHHHHhhhhcCCEEEEEEEC-CCCccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 347899999996432 33455678899999887654 3332222 2222333221 2489999999
Q ss_pred cCcCCCCC------cHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 212 IDLMDKGT------DAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 212 ~D~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+|+.+... +..+.+..... ....++.+++.++.++++++.
T Consensus 114 ~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~ 159 (164)
T cd04171 114 ADLVDEDWLELVEEEIRELLAGTFL-ADAPIFPVSAVTGEGIEELKE 159 (164)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCc-CCCcEEEEeCCCCcCHHHHHH
Confidence 99975421 11122211000 135677777777777766544
No 75
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.39 E-value=2.5e-12 Score=120.40 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=89.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||+|++++.++.+ .....+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~-------------------------------------------- 37 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAA-------------------------------------------- 37 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCcccee--------------------------------------------
Confidence 69999999999999999999998633 111111100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~ 193 (609)
+. ...+.+. .....+.+||+||..+ ...+...|+++++++|++++..+.+ +. ...++.
T Consensus 38 ----~~--~~~v~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 97 (163)
T cd01860 38 ----FL--TQTVNLD-DTTVKFEIWDTAGQER-------------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVK 97 (163)
T ss_pred ----EE--EEEEEEC-CEEEEEEEEeCCchHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHH
Confidence 00 0011111 1123578999999533 2455677899999998887654332 11 122333
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.+......+.++++|+||+|+.+......+............|+.+++.++.++.+.+..+
T Consensus 98 ~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 98 ELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred HHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 3333343467899999999987433211111111122233567888887777776655443
No 76
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.39 E-value=1.7e-12 Score=122.14 Aligned_cols=154 Identities=16% Similarity=0.178 Sum_probs=90.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+|+|+++||||||++++.+..+ +.... .|.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~-~~~~~-~t~-------------------------------------------- 36 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF-SERQG-NTI-------------------------------------------- 36 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC-cccCC-Ccc--------------------------------------------
Confidence 57899999999999999999998765 21111 010
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
+.......+.+. .....+.||||||... ...+...+++.+|+++++++..+... ....+
T Consensus 37 -----~~~~~~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~ 97 (165)
T cd01864 37 -----GVDFTMKTLEIE-GKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAIIAYDITRRSSFESVPHW 97 (165)
T ss_pred -----ceEEEEEEEEEC-CEEEEEEEEECCChHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHHH
Confidence 000000111111 1124688999999533 25677889999999998776544211 11235
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccC-CceeeEeeCChhhhccccc
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLR-YPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~ 252 (609)
+..+....+.+.|.++|+||+|+.+......+.........+ ..|+.+++..+.++++.+.
T Consensus 98 ~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 98 IEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred HHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 554555555678999999999997553211111111111222 3467777776666655443
No 77
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.39 E-value=2.6e-12 Score=124.10 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=69.8
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHHHHHHhC---CCCCceEEEe
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVD---PRGDRTFGVL 209 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~l~~~~d---~~~~rti~Vl 209 (609)
..+.||||||..+. ..+...|++++|++|++++..+... ....++....... +.+.|+|+|.
T Consensus 47 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 47 CMLEVLDTAGQEEY-------------TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEEECCCchhh-------------HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 35889999996542 4567789999999998775433211 1122333333333 2468999999
Q ss_pred cccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHHH
Q 007296 210 TKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREHE 262 (609)
Q Consensus 210 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ 262 (609)
||+|+.+......+.........+..|+.+++.++.++++.+..+.....+..
T Consensus 114 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~ 166 (190)
T cd04144 114 NKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQR 166 (190)
T ss_pred EChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999753321111111111223456888888888888887776665544433
No 78
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.39 E-value=2.5e-12 Score=120.07 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=63.3
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHHHHHHHH---hCCCCCceEEE
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKISRE---VDPRGDRTFGV 208 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~l~~~---~d~~~~rti~V 208 (609)
...+.+|||||..+. ..+...|+++++++|++++..+.. +. ...++..+.. +...+.|+++|
T Consensus 44 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 110 (162)
T cd04157 44 NLSFTAFDMSGQGKY-------------RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF 110 (162)
T ss_pred CEEEEEEECCCCHhh-------------HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence 346889999997542 567788999999999877654321 00 1122222211 12347899999
Q ss_pred ecccCcCCCCC--cHHHHHhccc-cccCCceeeEeeCChhhhcccccHH
Q 007296 209 LTKIDLMDKGT--DAVDILEGKS-YKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 209 ltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+||+|+.+... +..+.+.-.. ......++.+++.++.++++.+..+
T Consensus 111 ~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 111 ANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred EeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 99999975432 1122221111 1112246677788888877665543
No 79
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.39 E-value=6.9e-12 Score=116.10 Aligned_cols=148 Identities=22% Similarity=0.279 Sum_probs=85.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|+++||||||+|+++|..+.+.+ ..|.++.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~---------------------------------------- 37 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVS-----DIAGTTR---------------------------------------- 37 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEecc-----CCCCCcc----------------------------------------
Confidence 7999999999999999999998752211 1111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 195 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~ 195 (609)
+.....+. .....+++|||||+...... ........+..++.++++++++++. ........ ..+.
T Consensus 38 -------~~~~~~~~-~~~~~~~i~DtpG~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~v~d~-~~~~~~~~-~~~~ 102 (157)
T cd04164 38 -------DVIEESID-IGGIPVRLIDTAGIRETEDE-----IEKIGIERAREAIEEADLVLFVIDA-SRGLDEED-LEIL 102 (157)
T ss_pred -------ceEEEEEE-eCCEEEEEEECCCcCCCcch-----HHHHHHHHHHHHHhhCCEEEEEEEC-CCCCCHHH-HHHH
Confidence 01111111 12347899999998764321 2222223455677889988776644 43333323 2333
Q ss_pred HHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 196 REVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 196 ~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
.. ..+.++++|+||+|+.+.... ........++.+++..+.+++++..
T Consensus 103 ~~--~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 103 EL--PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred Hh--hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 33 446899999999999865432 1112234566666666555554443
No 80
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.39 E-value=2.4e-12 Score=119.64 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=63.5
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
.++.+|||||+...... +. . ..+...|+. .++++|++++.... . ....+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~~--~~--~---~~~~~~~~~~~~~d~vi~v~d~~~~--~--~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPY--SE--D---EKVARDFLLGEKPDLIVNVVDATNL--E--RNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCC--Ch--h---HHHHHHHhcCCCCcEEEEEeeCCcc--h--hHHHHHHHHHHcCCCEEEEEehh
Confidence 47899999998764321 11 1 345566775 89998887654331 1 12234444444578999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
|+.+......+. ......++..++.+++.++.+++..+..+
T Consensus 112 Dl~~~~~~~~~~-~~~~~~~~~~~~~iSa~~~~~~~~l~~~l 152 (158)
T cd01879 112 DEAEKRGIKIDL-DKLSELLGVPVVPTSARKGEGIDELKDAI 152 (158)
T ss_pred hhcccccchhhH-HHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence 997653211111 11112234567777777777766554433
No 81
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.38 E-value=2e-12 Score=148.41 Aligned_cols=161 Identities=21% Similarity=0.259 Sum_probs=100.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+++|.+|||||||+|+|+|.+. .+.+.|.++.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~------~vgn~pGvTv-------------------------------------- 38 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ------RVGNWAGVTV-------------------------------------- 38 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC------ccCCCCCceE--------------------------------------
Confidence 46899999999999999999999875 2222332222
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+...-.+ ..+...+.+|||||+.+......+.... +.+...|+. ++|++|++++..+. ...
T Consensus 39 ---------e~k~g~~-~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD~vI~VvDat~l----er~ 101 (772)
T PRK09554 39 ---------ERKEGQF-STTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNL----ERN 101 (772)
T ss_pred ---------eeEEEEE-EcCceEEEEEECCCccccccccccccHH---HHHHHHHHhccCCCEEEEEecCCcc----hhh
Confidence 0011112 2234578999999998754321112223 234556654 78999876654332 223
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+.+..++...+.|+++|+||+|+.++.....+. +.....++.+++.++.+.++++++.......
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHHHHH
Confidence 345566666789999999999997543321221 1122345677888888888888776665544
No 82
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.38 E-value=2.1e-12 Score=123.26 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=63.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---hHHHHHHHHh-CCCCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREV-DPRGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~~~l~l~~~~-d~~~~rti~Vlt 210 (609)
..+.||||||..+ ...+...|+++++++|++++..+. -+- ..|+...... ...+.|+++|.|
T Consensus 63 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 63 IHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTNE-QSFLNVRNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEEeCCChHH-------------HHHHHHHHhCCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 3578999999543 366788899999999887754332 111 2233222222 223578999999
Q ss_pred ccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 211 KIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
|+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 129 K~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 129 KADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred CccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999975432111111111122345678888877777776665443
No 83
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.38 E-value=1.8e-12 Score=120.13 Aligned_cols=107 Identities=19% Similarity=0.301 Sum_probs=64.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
..+.+|||||+..... .....+...+..+++++|.+++++... ......+ ..+.+.+...+.|+++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~d~ii~v~d~~-~~~~~~~-~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDDE-----GISKEIREQAELAIEEADVILFVVDGR-EGLTPAD-EEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCchh-----HHHHHHHHHHHHHHHhCCEEEEEEecc-ccCCccH-HHHHHHHHhcCCCEEEEEECccc
Confidence 4689999999876422 234445556677888999988876543 3322222 23444444557999999999999
Q ss_pred CCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccH
Q 007296 215 MDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 215 ~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~ 253 (609)
.+.... ...+ ..++. .++.++...+.++++++..
T Consensus 118 ~~~~~~-~~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (157)
T cd01894 118 IKEEDE-AAEF----YSLGFGEPIPISAEHGRGIGDLLDA 152 (157)
T ss_pred CChHHH-HHHH----HhcCCCCeEEEecccCCCHHHHHHH
Confidence 865432 1221 11222 3455666655665554443
No 84
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.38 E-value=2.9e-12 Score=120.24 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=90.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+++|++|||||||++++....+ +......+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~------------------------------------------- 37 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDS------------------------------------------- 37 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchhe-------------------------------------------
Confidence 3799999999999999999986654 22111111100
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~l 192 (609)
+ ...+.+. .....+.+|||||..+. ..+...|+++++++|++++..+.. +. ...+.
T Consensus 38 -----~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~ 95 (164)
T cd04175 38 -----Y---RKQVEVD-GQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLR 95 (164)
T ss_pred -----E---EEEEEEC-CEEEEEEEEECCCcccc-------------hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 0111221 12346789999997553 556778999999998877543221 11 11222
Q ss_pred HH-HHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 193 KI-SREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l-~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.. .+.....+.|+++|+||+|+.+......+........++..|+.+++.++.++++.+..+
T Consensus 96 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 96 EQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 22 222344568999999999997543211111111112334567888888777777665544
No 85
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.38 E-value=4.3e-12 Score=121.76 Aligned_cols=116 Identities=24% Similarity=0.375 Sum_probs=73.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-+|+++|.+|||||||++++++..+.. + .|+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~------~-~~t------------------------------------------ 34 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVN------T-VPT------------------------------------------ 34 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCC------c-CCc------------------------------------------
Confidence 469999999999999999999876521 1 121
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH---
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA--- 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~--- 191 (609)
.++....+.+.+.......+.+|||||..+. ..+...|++.++++|++++..+.+ ....+
T Consensus 35 ---~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~-~~~~~~~~ 97 (183)
T cd04152 35 ---KGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------------RPLWKSYTRCTDGIVFVVDSVDVE-RMEEAKTE 97 (183)
T ss_pred ---cccceeEEEeeccCCCceEEEEEECCCcHhH-------------HHHHHHHhccCCEEEEEEECCCHH-HHHHHHHH
Confidence 1111112222222223457889999996432 556788999999998877654321 11111
Q ss_pred H-HHHHHhCCCCCceEEEecccCcCC
Q 007296 192 I-KISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 192 l-~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
+ .+.+.....+.|+++|+||+|+.+
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccc
Confidence 1 122333345789999999999864
No 86
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=2.8e-12 Score=125.03 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=91.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||++++++..|.+. . .|+.-.
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~-~-----~~t~~~---------------------------------------- 35 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQH-Y-----KATIGV---------------------------------------- 35 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC-C-----CCceeE----------------------------------------
Confidence 699999999999999999998875211 1 111100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---HHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~---~~l 192 (609)
.+. ...+.+.......+.||||||..+. ..+...|+++++++|++++..+. ..-. .|.
T Consensus 36 ---d~~--~~~v~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~D~t~~-~s~~~~~~~~ 96 (201)
T cd04107 36 ---DFA--LKVIEWDPNTVVRLQLWDIAGQERF-------------GGMTRVYYRGAVGAIIVFDVTRP-STFEAVLKWK 96 (201)
T ss_pred ---EEE--EEEEEECCCCEEEEEEEECCCchhh-------------hhhHHHHhCCCCEEEEEEECCCH-HHHHHHHHHH
Confidence 000 0011111112346789999997442 56778899999999987754332 1111 122
Q ss_pred HHHHH-h---CCCCCceEEEecccCcCCCCCcHHHHHhccccccC-CceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISRE-V---DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLR-YPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~-~---d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..+.. + ...+.|+|+|.||+|+.+......+.+.......+ .+|+.+++.++.++++.+..+....
T Consensus 97 ~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 97 ADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred HHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 21111 1 12457999999999997422111111111111223 4688888888888777766555443
No 87
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.37 E-value=2.7e-12 Score=120.24 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=88.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|++++|||||++++.+..+.+.-.. ++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~---------------------------------------------- 35 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDP-TIE---------------------------------------------- 35 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCC-chh----------------------------------------------
Confidence 799999999999999999998876221111 000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~ 193 (609)
.+. ...+.+.+ ....+.||||||..+. ..+...|+++++++|++++..+.. + ....+..
T Consensus 36 ---~~~--~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~ 96 (163)
T cd04176 36 ---DFY--RKEIEVDS-SPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRD 96 (163)
T ss_pred ---heE--EEEEEECC-EEEEEEEEECCCcccc-------------cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000 01111211 1235789999996553 445677899999998876554321 1 1122222
Q ss_pred HHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
..... ...+.|+++|+||+|+.+................+.+|+.++++++.++++.+...
T Consensus 97 ~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 97 QIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred HHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 22222 33578999999999986533211111111112234567777777777776655433
No 88
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.37 E-value=3.8e-12 Score=123.92 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=96.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|||++|||||||++++.+..| +... .|+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~-~~~~-----~~t---------------------------------------- 38 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTF-SGSY-----ITT---------------------------------------- 38 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCc-----Ccc----------------------------------------
Confidence 467999999999999999999998875 1111 110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--- 189 (609)
.++......+.+. .....+.||||||.... ..+...|+++++++|+|++..+.. +..
T Consensus 39 -----~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~a~~iilv~D~~~~~-s~~~~~ 98 (199)
T cd04110 39 -----IGVDFKIRTVEIN-GERVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTNGE-SFVNVK 98 (199)
T ss_pred -----ccceeEEEEEEEC-CEEEEEEEEeCCCchhH-------------HHHHHHHhCCCcEEEEEEECCCHH-HHHHHH
Confidence 0000001111111 12236789999996442 566788999999998877654422 112
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
.|+....... ...|.++|+||+|+.+......+.........+..|+.+++..+.++++++..+.....
T Consensus 99 ~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 99 RWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 2333333332 34789999999999764321111111111233466888888888888887776655443
No 89
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=3.3e-12 Score=125.53 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=95.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|+++||||||++++++..+-+.. . |+.-
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~-----~ti~---------------------------------------- 36 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-D-----PTVG---------------------------------------- 36 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-C-----ceec----------------------------------------
Confidence 57999999999999999999998762221 1 1100
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l 192 (609)
..+. ...+.+.......+.+|||||..+. ..+...|+++++++|++++..+..- ....++
T Consensus 37 ---~d~~--~~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~ 98 (211)
T cd04111 37 ---VDFF--SRLIEIEPGVRIKLQLWDTAGQERF-------------RSITRSYYRNSVGVLLVFDITNRESFEHVHDWL 98 (211)
T ss_pred ---eEEE--EEEEEECCCCEEEEEEEeCCcchhH-------------HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHH
Confidence 0000 0011111112236889999996442 5567789999999988776543210 012233
Q ss_pred HHH-HHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KIS-REVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~-~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..+ +...+...+.++|.||+|+.+......+........++.+|+.+++.++.++++.+..+....
T Consensus 99 ~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 99 EEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred HHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 322 233445567889999999976432111111111223447788888888888887776665443
No 90
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.36 E-value=3.4e-12 Score=121.53 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=61.8
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ..++..|++.+|++|+|++.. .....+. +.........+.++++|+||+|
T Consensus 66 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~-~~~~~~~-~~~~~~~~~~~~~iiiv~NK~D 130 (179)
T cd01890 66 EYLLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDAT-QGVEAQT-LANFYLALENNLEIIPVINKID 130 (179)
T ss_pred cEEEEEEECCCChhh-------------HHHHHHHHHhcCeEEEEEECC-CCccHhh-HHHHHHHHHcCCCEEEEEECCC
Confidence 346889999998653 456778899999998877543 3322222 2222233345789999999999
Q ss_pred cCCCCCc-HHHHHhccccccCC---ceeeEeeCChhhhcccccHH
Q 007296 214 LMDKGTD-AVDILEGKSYKLRY---PWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 214 ~~~~~~~-~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~ 254 (609)
+.+.... ..+.+. ..++. .++.+++.++.++++++..+
T Consensus 131 l~~~~~~~~~~~~~---~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 172 (179)
T cd01890 131 LPSADPERVKQQIE---DVLGLDPSEAILVSAKTGLGVEDLLEAI 172 (179)
T ss_pred CCcCCHHHHHHHHH---HHhCCCcccEEEeeccCCCCHHHHHHHH
Confidence 8653211 111111 11222 36677777777776655444
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.36 E-value=3e-12 Score=118.26 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=88.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+++|.++|||||++|++.+..+.+... ..+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~-~t~~--------------------------------------------- 34 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK-STIG--------------------------------------------- 34 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC-Ccee---------------------------------------------
Confidence 379999999999999999999988632211 1000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~~~ 191 (609)
.......+.+. ....++.+||+||... ...+...+++++|++|++++..+.+ .. ..+
T Consensus 35 -----~~~~~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~ 94 (159)
T cd00154 35 -----VDFKSKTIEID-GKTVKLQIWDTAGQER-------------FRSITPSYYRGAHGAILVYDITNRE-SFENLDKW 94 (159)
T ss_pred -----eeeEEEEEEEC-CEEEEEEEEecCChHH-------------HHHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHH
Confidence 00001111111 1224678999999743 2557788999999998877654321 11 223
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+.........+.++++|+||+|+..+.....+.+.........+|+.+++..+.++++.+.
T Consensus 95 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 95 LKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred HHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 3333333334689999999999972222111111111122346677777776666655443
No 92
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.36 E-value=4e-12 Score=122.42 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=94.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|+++||||||++++++..|-+... |+.-
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~------~t~~---------------------------------------- 34 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK------STIG---------------------------------------- 34 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC------Ccee----------------------------------------
Confidence 379999999999999999999987621110 1000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l 192 (609)
.......+.+. .....+.+|||||.... ..+...+++++|++|++++..+.+- ....|+
T Consensus 35 -----~~~~~~~~~~~-~~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~ 95 (188)
T cd04125 35 -----VDFKIKTVYIE-NKIIKLQIWDTNGQERF-------------RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWI 95 (188)
T ss_pred -----eEEEEEEEEEC-CEEEEEEEEECCCcHHH-------------HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHH
Confidence 00000111121 12346789999995432 4567889999999998876543221 112234
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.......+...+.++|.||.|+.+......+.........+..|+.+++.++.++++.+..+....
T Consensus 96 ~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 96 NEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred HHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 444444455678999999999875432111111111122345688888888888887776555443
No 93
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.36 E-value=9.9e-12 Score=114.42 Aligned_cols=110 Identities=23% Similarity=0.327 Sum_probs=64.6
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
..++.+|||||+....... .........++..+|.+++++..... ...... .+.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~------~~~~~~~~~~~~~~d~il~v~~~~~~-~~~~~~-~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG------REREELARRVLERADLILFVVDADLR-ADEEEE-KLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccch------hhHHHHHHHHHHhCCEEEEEEeCCCC-CCHHHH-HHHHHHHhcCCeEEEEEEccc
Confidence 5689999999988754321 11124566788999998887655443 222222 134444556789999999999
Q ss_pred cCCCCCcHHHH---HhccccccCCceeeEeeCChhhhcccc
Q 007296 214 LMDKGTDAVDI---LEGKSYKLRYPWIGVVNRSQADINKSV 251 (609)
Q Consensus 214 ~~~~~~~~~~~---l~~~~~~l~~g~~~v~~~s~~~i~~~~ 251 (609)
+.......... ...........++.+++..+.++.+.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 116 LLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred cCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 98755322111 111122223456666666555554433
No 94
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.36 E-value=4.3e-12 Score=118.62 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=63.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..+.||||||..+ ...+...|++++++++++++..+.+. ....|+...+... .+.|+++|+||+
T Consensus 51 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECh
Confidence 4688999999543 25667889999999988765433221 1112332233222 368999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
|+.+......+........++.+|+.+++..+.++++.+..+
T Consensus 117 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 117 DLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 997643211111111122334567788887777766554433
No 95
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.35 E-value=2.6e-12 Score=121.66 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=58.3
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-----ccchH---HHHHHHHhCC-----
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-----LATSD---AIKISREVDP----- 200 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-----~~~~~---~l~l~~~~d~----- 200 (609)
...+.||||||+....... +.+ ..-...+++.+++++++++..+.+ ....+ +.........
T Consensus 43 ~~~~~i~DtpG~~~~~~~~--~~~----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (176)
T cd01881 43 GARIQVADIPGLIEGASEG--RGL----GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILG 116 (176)
T ss_pred CCeEEEEeccccchhhhcC--CCc----cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHH
Confidence 4578999999986432211 111 112345678899998877654431 11111 1111222221
Q ss_pred --CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccc
Q 007296 201 --RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSV 251 (609)
Q Consensus 201 --~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~ 251 (609)
.+.|+++|+||+|+.....................++.+++..+.++++..
T Consensus 117 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~ 169 (176)
T cd01881 117 LLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELI 169 (176)
T ss_pred HHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHH
Confidence 368999999999997654321110111111223446666666666555443
No 96
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.35 E-value=5.4e-12 Score=120.83 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...++||||||..+. ......+++.+|++++++.. ....... ...+.......+.++++|+||+|
T Consensus 61 ~~~~~liDtpG~~~~-------------~~~~~~~~~~~d~~i~v~d~-~~~~~~~-~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHEDF-------------SSEVIRGLSVSDGAILVVDA-NEGVQPQ-TREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHHH-------------HHHHHHHHHhcCEEEEEEEC-CCCCcHH-HHHHHHHHHHCCCCeEEEEECCC
Confidence 457999999997542 45567788899999887654 3322222 22233334446789999999999
Q ss_pred cCCC
Q 007296 214 LMDK 217 (609)
Q Consensus 214 ~~~~ 217 (609)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 97
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.35 E-value=9.9e-12 Score=116.37 Aligned_cols=105 Identities=14% Similarity=0.213 Sum_probs=61.9
Q ss_pred EEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 139 LIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 139 lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+|||||...... .....+ ..+++.+|+++++++..+.+.....+ +. .+. .+.++++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~~--------~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~~--~~-~~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHP--------RWYHAL-ITTLQDVDMLIYVHGANDPESRLPAG--LL-DIG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCCH--------HHHHHH-HHHHhcCCEEEEEEeCCCcccccCHH--HH-hcc-CCCCeEEEEEccccCccc
Confidence 699999754311 112222 34578999998876554332222222 22 222 357899999999985432
Q ss_pred Cc-HHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 219 TD-AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 219 ~~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.+ ..+.+. ......+|+.+++++++++++++.......
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 11 122221 122225788999999999988777665543
No 98
>PLN03118 Rab family protein; Provisional
Probab=99.35 E-value=9.1e-12 Score=122.38 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=95.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|||+++||||||++++++..+ +. ....+.
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~-~~-~~~t~~-------------------------------------------- 47 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSV-ED-LAPTIG-------------------------------------------- 47 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CC-cCCCce--------------------------------------------
Confidence 46999999999999999999998765 11 111100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-cc--hH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-AT--SD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~~--~~ 190 (609)
+......+.+ ......+.||||||..+. ..+...|+++++++|++++..+.+- .. ..
T Consensus 48 ------~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~ 107 (211)
T PLN03118 48 ------VDFKIKQLTV-GGKRLKLTIWDTAGQERF-------------RTLTSSYYRNAQGIILVYDVTRRETFTNLSDV 107 (211)
T ss_pred ------eEEEEEEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 0001111111 111236789999997553 5567789999999998876544211 11 11
Q ss_pred HHHHHHHhC-CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHH
Q 007296 191 AIKISREVD-PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREH 261 (609)
Q Consensus 191 ~l~l~~~~d-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~ 261 (609)
|........ ..+.+.++|.||+|+........+.........+..|+.+++.++.++++.+..+.....+.
T Consensus 108 ~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 108 WGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 222233222 24568999999999975432111111111122345678888888888888777666554443
No 99
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.34 E-value=8.3e-12 Score=118.56 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=93.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|++|+|||||++++.+..| |.....++. .
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~-~-------------------------------------------- 37 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIE-D-------------------------------------------- 37 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCccc-c--------------------------------------------
Confidence 799999999999999999998876 322111110 0
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c-chHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~-~~~~l~ 193 (609)
.+ ...+.+.+ ....+.||||||.... ..+...|++.++++|+|++..+..- . ..++..
T Consensus 38 ---~~---~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~ 97 (172)
T cd04141 38 ---AY---KQQARIDN-EPALLDILDTAGQAEF-------------TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKK 97 (172)
T ss_pred ---eE---EEEEEECC-EEEEEEEEeCCCchhh-------------HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHH
Confidence 00 00111211 2246889999997543 6678889999999998876543221 1 122333
Q ss_pred HHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 194 ISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 194 l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
..... ...+.|+++|.||+|+.+...-..+.........+.+|+.+++..+.++++.+..+..
T Consensus 98 ~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 98 LITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred HHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 44443 3346899999999998653311011111111223467888888888888776655543
No 100
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.34 E-value=6.6e-12 Score=119.16 Aligned_cols=150 Identities=16% Similarity=0.265 Sum_probs=89.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-++|+++|+++||||||++++++..+ +. ..|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~----------------------------------------- 44 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISP----------------------------------------- 44 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCC-----------------------------------------
Confidence 457999999999999999999998753 11 011
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~ 190 (609)
+.++....+. + +...+.+|||||... ...+...|+++++++++|++..+.+ +.. ..
T Consensus 45 ----t~g~~~~~~~--~---~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 102 (173)
T cd04154 45 ----TLGFQIKTLE--Y---EGYKLNIWDVGGQKT-------------LRPYWRNYFESTDALIWVVDSSDRLRLDDCKR 102 (173)
T ss_pred ----ccccceEEEE--E---CCEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHH
Confidence 0111111111 1 135688999999654 2556788999999998877654321 111 11
Q ss_pred HH-HHHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhccc-cccCCceeeEeeCChhhhccccc
Q 007296 191 AI-KISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKS-YKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 191 ~l-~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
++ .+.+.....+.|+++|+||+|+.+... +..+.+.... ......|+.+++.++.++++.+.
T Consensus 103 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 168 (173)
T cd04154 103 ELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGID 168 (173)
T ss_pred HHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHH
Confidence 11 122222234689999999999975432 1222322111 11234577777777777766544
No 101
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.34 E-value=7.3e-12 Score=117.86 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=90.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-+|+++|++|||||||++++++..| +... ..| .+....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~-~~t-~~~~~~--------------------------------------- 39 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESY-IPT-IEDTYR--------------------------------------- 39 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCc-CCc-chheEE---------------------------------------
Confidence 3699999999999999999999876 2211 111 010000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l 192 (609)
..+.. ......+.+|||||..+. ..+...|++.++++|++.+..+... ....+.
T Consensus 40 ----------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~ 95 (165)
T cd04140 40 ----------QVISC-SKNICTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSVTSKQSLEELKPIY 95 (165)
T ss_pred ----------EEEEE-CCEEEEEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 00001 112346889999997653 4456678889999988765433221 112233
Q ss_pred HHHHHhC---CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 193 KISREVD---PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l~~~~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
...++.. ..+.|+++|.||+|+.+......+.........+.+|+.+++.++.++++.+..+
T Consensus 96 ~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 96 ELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred HHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 3344432 2468999999999997532211111111112234678888888888877766544
No 102
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.34 E-value=8e-12 Score=117.72 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=90.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccccccc-ccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV-TRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
.+++|+|+|.++||||||++++++..+.| +.+.. +....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~--------------------------------------- 45 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFM--------------------------------------- 45 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEE---------------------------------------
Confidence 46999999999999999999999766522 21110 00000
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cch
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATS 189 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~ 189 (609)
...+.+. .....+.+||+||.... ..+...|++.+++++++++..+.+- ...
T Consensus 46 ------------~~~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (169)
T cd04114 46 ------------IKTVEIK-GEKIKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLP 99 (169)
T ss_pred ------------EEEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 0001111 11235789999996432 4556778999999988776533211 112
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.++..++.....+.+.++|.||+|+.++.....+..+.........++.+++.++.++++.+..+
T Consensus 100 ~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 164 (169)
T cd04114 100 EWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDL 164 (169)
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 34444455566678899999999987543211111111111112446666666666666555433
No 103
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.34 E-value=9.5e-12 Score=115.89 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=89.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|.+++|||||++++++..+-+... ..+......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~----------------------------------------- 39 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHE-STTQASFFQ----------------------------------------- 39 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC-CccceeEEE-----------------------------------------
Confidence 68999999999999999999987622111 111111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc--chHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~--~~~~l~ 193 (609)
.. +.+. .....+.+||+||.... ..+...|+.++++++++++..+.+.. ...++.
T Consensus 40 -------~~--~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 96 (162)
T cd04123 40 -------KT--VNIG-GKRIDLAIWDTAGQERY-------------HALGPIYYRDADGAILVYDITDADSFQKVKKWIK 96 (162)
T ss_pred -------EE--EEEC-CEEEEEEEEECCchHHH-------------HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 1111 11236889999995432 45667788899999887765433211 112233
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
..+...+.+.++++|+||+|+........+.........+..++.+++++..++++.+..+
T Consensus 97 ~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l 157 (162)
T cd04123 97 ELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSL 157 (162)
T ss_pred HHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 3344444578999999999997543211111111112234556777877777776655544
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.33 E-value=8.2e-12 Score=117.68 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=72.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|||+.|||||||++++.+..| |.... .| .+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~-~~-~~~~------------------------------------------ 36 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVP-RV-LPEI------------------------------------------ 36 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCC-Cc-ccce------------------------------------------
Confidence 689999999999999999999875 32211 01 1100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-cc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-AT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~~--~~~l 192 (609)
.+...+. .....+.+|||||.... ......+++.+++++++++..+.+. .. ..|.
T Consensus 37 --------~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~ 94 (166)
T cd01893 37 --------TIPADVT-PERVPTTIVDTSSRPQD-------------RANLAAEIRKANVICLVYSVDRPSTLERIRTKWL 94 (166)
T ss_pred --------Eeeeeec-CCeEEEEEEeCCCchhh-------------hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0111111 12346889999997542 3455677899999988765433211 11 1244
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
..++...+ +.|+++|+||+|+.+..
T Consensus 95 ~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 95 PLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHhCC-CCCEEEEEEchhccccc
Confidence 45555544 68999999999997654
No 105
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.33 E-value=1e-11 Score=115.95 Aligned_cols=147 Identities=15% Similarity=0.204 Sum_probs=84.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|.++||||||++++++..+ +. ..|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~-~~------~~~t------------------------------------------- 30 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAEL-VT------TIPT------------------------------------------- 30 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCc-cc------ccCc-------------------------------------------
Confidence 589999999999999999999875 11 1121
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 195 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~ 195 (609)
.++.... +..+....+.++||||.... ..+...|+++++++|++++..+.. ....+....
T Consensus 31 --~~~~~~~----~~~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~iv~v~D~~~~~-~~~~~~~~~ 90 (160)
T cd04156 31 --VGFNVEM----LQLEKHLSLTVWDVGGQEKM-------------RTVWKCYLENTDGLVYVVDSSDEA-RLDESQKEL 90 (160)
T ss_pred --cCcceEE----EEeCCceEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCcHH-HHHHHHHHH
Confidence 0010001 11223357899999997542 556678899999998876544321 112222212
Q ss_pred HH----hCCCCCceEEEecccCcCCCCC--cHHHHHhcccccc--CCceeeEeeCChhhhccccc
Q 007296 196 RE----VDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKL--RYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 196 ~~----~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l--~~g~~~v~~~s~~~i~~~~~ 252 (609)
.+ ....+.|+++|+||+|+.+... +....+....... ...++.+++.+++|+++.+.
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 155 (160)
T cd04156 91 KHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFR 155 (160)
T ss_pred HHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHH
Confidence 21 1224689999999999964321 1222221111111 12345566666667665544
No 106
>PLN03110 Rab GTPase; Provisional
Probab=99.33 E-value=7.7e-12 Score=123.39 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=95.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.-.|+|||+++||||||++++++..+ +... .|+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~-----~~t~---------------------------------------- 45 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEF-CLES-----KSTI---------------------------------------- 45 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCce----------------------------------------
Confidence 56999999999999999999999875 2211 1100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
++......+.+. .....+.||||||..+ ...+...|+++++++|++++..+... ....|
T Consensus 46 -----g~~~~~~~v~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 106 (216)
T PLN03110 46 -----GVEFATRTLQVE-GKTVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQTFDNVQRW 106 (216)
T ss_pred -----eEEEEEEEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhCCCCEEEEEEECCChHHHHHHHHH
Confidence 000000111121 1234788999999544 25677889999999988765433211 11345
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+..++...+.+.++++|.||+|+........+.........+.+|+.+++.++.++++.+..+..
T Consensus 107 ~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~ 171 (216)
T PLN03110 107 LRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILL 171 (216)
T ss_pred HHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 55556655667899999999998643321111111111223466777777777776665554443
No 107
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.32 E-value=1.2e-11 Score=120.14 Aligned_cols=120 Identities=24% Similarity=0.295 Sum_probs=70.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|.+|||||||+|+|+|..+ |......+... .+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~~~-~~t--------------------------------------- 40 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTGVV-ETT--------------------------------------- 40 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccCcc-ccc---------------------------------------
Confidence 4699999999999999999999764 32111111100 000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
.... .+..+..+++++|||||+...... ..+.++. ..+.+.|.++++ .+ .++...+. .+
T Consensus 41 -------~~~~--~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~l~~---~~~~~~d~~l~v-~~--~~~~~~d~-~~ 99 (197)
T cd04104 41 -------MKRT--PYPHPKFPNVTLWDLPGIGSTAFP-----PDDYLEE---MKFSEYDFFIII-SS--TRFSSNDV-KL 99 (197)
T ss_pred -------cCce--eeecCCCCCceEEeCCCCCcccCC-----HHHHHHH---hCccCcCEEEEE-eC--CCCCHHHH-HH
Confidence 0000 022234568999999998753221 1111111 124567877664 33 23444442 35
Q ss_pred HHHhCCCCCceEEEecccCcCC
Q 007296 195 SREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK~D~~~ 216 (609)
++.+...+.++++|+||+|+..
T Consensus 100 ~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 100 AKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred HHHHHHhCCCEEEEEecccchh
Confidence 5555556889999999999954
No 108
>PTZ00369 Ras-like protein; Provisional
Probab=99.32 E-value=1.2e-11 Score=119.34 Aligned_cols=156 Identities=14% Similarity=0.139 Sum_probs=89.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|+|++|||||||++++.+..| +......+. .
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~-~~~~~~t~~-~------------------------------------------ 40 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHF-IDEYDPTIE-D------------------------------------------ 40 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCchh-h------------------------------------------
Confidence 57999999999999999999998775 211110000 0
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
.+ ...+.+. .....+.+|||||..+. ..+...|++.++++|++++..+.+. ....+
T Consensus 41 -----~~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~ 98 (189)
T PTZ00369 41 -----SY---RKQCVID-EETCLLDILDTAGQEEY-------------SAMRDQYMRTGQGFLCVYSITSRSSFEEIASF 98 (189)
T ss_pred -----EE---EEEEEEC-CEEEEEEEEeCCCCccc-------------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00 0001111 11235779999997653 5567789999999988776544321 11222
Q ss_pred HHHHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
....... ...+.|+++|.||+|+.+................+..|+.+++.++.++++.+..+.
T Consensus 99 ~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~ 163 (189)
T PTZ00369 99 REQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163 (189)
T ss_pred HHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 2222222 334679999999999864321111111111122335677777777777766555443
No 109
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.32 E-value=1.4e-11 Score=113.98 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=84.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
.|+++|+++||||||+|+|+|.++ +.... +|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~-~~~~~-~t----------------------------------------------- 31 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF-SEDTI-PT----------------------------------------------- 31 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC-CcCcc-CC-----------------------------------------------
Confidence 489999999999999999999876 22111 11
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH--
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-- 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~-- 193 (609)
.++. ... +... ...+.+|||||.... ..+...|++.+++++++++....+ .......
T Consensus 32 --~~~~--~~~--~~~~-~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~ 90 (159)
T cd04159 32 --VGFN--MRK--VTKG-NVTLKVWDLGGQPRF-------------RSMWERYCRGVNAIVYVVDAADRT-ALEAAKNEL 90 (159)
T ss_pred --CCcc--eEE--EEEC-CEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCCHH-HHHHHHHHH
Confidence 0010 011 1111 256889999996442 566788999999998876543321 1111111
Q ss_pred --HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhc---c-ccccCCceeeEeeCChhhhccccc
Q 007296 194 --ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEG---K-SYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 194 --l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~---~-~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+.......+.|.++|+||+|+.+... ..++... . .......++.++++++.++++.+.
T Consensus 91 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 91 HDLLEKPSLEGIPLLVLGNKNDLPGALS-VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred HHHHcChhhcCCCEEEEEeCccccCCcC-HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 11211224689999999999876432 2222111 1 111123566777777666655443
No 110
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.32 E-value=1.2e-11 Score=116.81 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=89.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|++||.+||||||+++++++..+.+. ....+...
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~-------------------------------------------- 37 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFIES-YDPTIEDS-------------------------------------------- 37 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcc-cCCcchhe--------------------------------------------
Confidence 699999999999999999998876221 11111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~ 193 (609)
+ ...+.+ ......+.+|||||..+. ..+...|++.++.++++++..+.. + ....+..
T Consensus 38 ----~---~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~ 96 (168)
T cd04177 38 ----Y---RKQVEI-DGRQCDLEILDTAGTEQF-------------TAMRELYIKSGQGFLLVYSVTSEASLNELGELRE 96 (168)
T ss_pred ----E---EEEEEE-CCEEEEEEEEeCCCcccc-------------hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0 001111 112246789999997653 557778889999998876543321 1 1122333
Q ss_pred HHHH-hCCCCCceEEEecccCcCCCCCcHHHHHhccccccC-CceeeEeeCChhhhcccccHH
Q 007296 194 ISRE-VDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLR-YPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.... ....+.|+++|+||.|+.+......+...+.....+ .+|+.+++.++.++++.+...
T Consensus 97 ~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 97 QVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred HHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 2322 344578999999999997544211111111111222 567888888777776655433
No 111
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.32 E-value=8.6e-12 Score=117.28 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=62.2
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHH----HHhCCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS----REVDPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~----~~~d~~~~rti~Vl 209 (609)
...+.+|||||.... ..+...+++.+++++++++..+.+ ......... +.....+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQESL-------------RSLWDKYYAECHAIIYVIDSTDRE-RFEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECchHH-HHHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 457899999997542 556778899999998877654322 111221222 22223478999999
Q ss_pred cccCcCCCCC--cHHHHHhccccc---cCCceeeEeeCChhhhccccc
Q 007296 210 TKIDLMDKGT--DAVDILEGKSYK---LRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 210 tK~D~~~~~~--~~~~~l~~~~~~---l~~g~~~v~~~s~~~i~~~~~ 252 (609)
||+|+.+... +..+.+...... ....++.+++.++.++++.+.
T Consensus 115 NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~ 162 (167)
T cd04160 115 NKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIE 162 (167)
T ss_pred EccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHH
Confidence 9999865432 122333221111 123567777777777665443
No 112
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.32 E-value=9.1e-12 Score=116.26 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=61.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc--chHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA--TSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~--~~~~l~l~~~~d~~~~rti~VltK 211 (609)
..+.+|||||.... ..+...|++.++++|++++..+.. +. ......+.+.....+.|+++|+||
T Consensus 43 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 109 (158)
T cd04151 43 LKFQVWDLGGQTSI-------------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANK 109 (158)
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeC
Confidence 46889999997542 567788999999998877544321 11 111112223222346899999999
Q ss_pred cCcCCCCCcHHHHHh--ccc--cccCCceeeEeeCChhhhcccccH
Q 007296 212 IDLMDKGTDAVDILE--GKS--YKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~--~~~--~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
+|+.+... ..++.. +.. ......++.+++.++.++++.+..
T Consensus 110 ~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 154 (158)
T cd04151 110 QDMPGALS-EAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDW 154 (158)
T ss_pred CCCCCCCC-HHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHH
Confidence 99875431 122211 111 111123667777777777665543
No 113
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.32 E-value=1.1e-11 Score=116.23 Aligned_cols=151 Identities=20% Similarity=0.191 Sum_probs=88.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|||+++||||||++++++..|-|... .|..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQL--STYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcC--CceeeEEEE----------------------------------------
Confidence 68999999999999999999887633211 111110000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc--chHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~--~~~~l~ 193 (609)
..+.+ ......+.+|||||..+. ..+...|++++|++|++++..+.... ...++.
T Consensus 40 ---------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 96 (161)
T cd04124 40 ---------HNAKF-EGKTILVDFWDTAGQERF-------------QTMHASYYHKAHACILVFDVTRKITYKNLSKWYE 96 (161)
T ss_pred ---------EEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00011 112246789999996542 56778899999999887765332111 123444
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
.++...+ +.|+++|+||+|+.+... .+.. .........++.+++.++.++++.+....
T Consensus 97 ~i~~~~~-~~p~ivv~nK~Dl~~~~~--~~~~-~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 97 ELREYRP-EIPCIVVANKIDLDPSVT--QKKF-NFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred HHHHhCC-CCcEEEEEECccCchhHH--HHHH-HHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 4444333 589999999999853211 1111 11112234567777777777766655443
No 114
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.31 E-value=9.8e-12 Score=116.63 Aligned_cols=154 Identities=13% Similarity=0.156 Sum_probs=91.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|++++|||||++.+++..|.|... .|..+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~-------------------------------------------- 35 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGV-------------------------------------------- 35 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--Cceee--------------------------------------------
Confidence 68999999999999999999887632211 11000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~ 193 (609)
......+.+.+ ....+.+|||||..+. ..+...|++++++++++++..+..- ....++.
T Consensus 36 -----~~~~~~~~~~~-~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~ 96 (161)
T cd04117 36 -----DFKMKTIEVDG-IKVRIQIWDTAGQERY-------------QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVS 96 (161)
T ss_pred -----EEEEEEEEECC-EEEEEEEEeCCCcHhH-------------HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHH
Confidence 00000111211 1246789999996542 4567789999999988765433211 1122333
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.++...+.+.+.++|.||.|+.+......+.........+.+|+.+++.++.++++.+..+
T Consensus 97 ~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l 157 (161)
T cd04117 97 DVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRL 157 (161)
T ss_pred HHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 3334445568999999999997544211111111122344678888888877777655443
No 115
>PLN03108 Rab family protein; Provisional
Probab=99.31 E-value=1.1e-11 Score=121.79 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=93.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.-+|+|+|+++||||||++++++..|-|.......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--------------------------------------------- 40 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--------------------------------------------- 40 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc---------------------------------------------
Confidence 57899999999999999999999876332111000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~ 191 (609)
+......+.+.+. ...+.+|||||.... ..+...|++.++++|++++..+..... ..+
T Consensus 41 ------~~~~~~~i~~~~~-~i~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~ 100 (210)
T PLN03108 41 ------VEFGARMITIDNK-PIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLASW 100 (210)
T ss_pred ------ceEEEEEEEECCE-EEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHHH
Confidence 0000001112111 125789999996542 456778899999998877654432111 133
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+..+........|+++|.||+|+........+..+......+..|+.+++.++.++++.+....
T Consensus 101 ~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 101 LEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred HHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 3333334445689999999999975432111111111122345688888888877777554443
No 116
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.31 E-value=1e-11 Score=117.44 Aligned_cols=112 Identities=14% Similarity=0.217 Sum_probs=64.9
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHh----CCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vl 209 (609)
...+.+|||||.... ..+...|++.+|++|++++..+.. .-.++......+ ...+.|+++|.
T Consensus 42 ~~~i~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~s~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHKL-------------RPLWKHYYLNTQAVVFVVDSSHRD-RVSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChhc-------------chHHHHHhccCCEEEEEEeCCcHH-HHHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 357889999997543 456778899999999877654321 111121222211 22347899999
Q ss_pred cccCcCCCCC--cHHHHHhcccccc--CCceeeEeeCChhhhcccccHHHHHHH
Q 007296 210 TKIDLMDKGT--DAVDILEGKSYKL--RYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 210 tK~D~~~~~~--~~~~~l~~~~~~l--~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
||.|+.+..+ +..+++....... ...++.+++.++.|+++.+..+.....
T Consensus 108 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 108 NKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred eCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 9999965422 1223332111111 123445677777888877766654433
No 117
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.31 E-value=1.2e-11 Score=119.17 Aligned_cols=160 Identities=21% Similarity=0.162 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.+-+|+|+|+.++|||||+.++.+..| +.... .| +
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t--~----------------------------------------- 39 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYG-YN--M----------------------------------------- 39 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-Cc--c-----------------------------------------
Confidence 357899999999999999999998765 11110 00 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~ 190 (609)
+..+ ....+.+. .....+.||||||..+. ..+...|+++++++|||++..+.. -....
T Consensus 40 ----~~~~--~~~~i~~~-~~~~~l~iwDt~G~~~~-------------~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~ 99 (189)
T cd04121 40 ----GIDY--KTTTILLD-GRRVKLQLWDTSGQGRF-------------CTIFRSYSRGAQGIILVYDITNRWSFDGIDR 99 (189)
T ss_pred ----eeEE--EEEEEEEC-CEEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 0000 01111121 12246889999997553 567788999999999887544321 11123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
|+..+....+ +.|+|+|.||.|+........+..+......+..|+.+++.++.++++.+..+....
T Consensus 100 w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 100 WIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 4444444444 689999999999965322111112111223456799999999999988877665443
No 118
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.31 E-value=2.1e-11 Score=111.62 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=54.2
Q ss_pred EEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 138 TLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 138 tlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+|||||.... .......+. .+++++|++|+|++..+.. .... ..+.... +.|.++|+||+|+.+.
T Consensus 38 ~~iDt~G~~~~--------~~~~~~~~~-~~~~~ad~vilv~d~~~~~-s~~~-~~~~~~~---~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 38 GAIDTPGEYVE--------NRRLYSALI-VTAADADVIALVQSATDPE-SRFP-PGFASIF---VKPVIGLVTKIDLAEA 103 (142)
T ss_pred eeecCchhhhh--------hHHHHHHHH-HHhhcCCEEEEEecCCCCC-cCCC-hhHHHhc---cCCeEEEEEeeccCCc
Confidence 58999997321 122234443 3588999998876543322 2111 1222222 3589999999999753
Q ss_pred CCcHHHHHhccccccC-CceeeEeeCChhhhccccc
Q 007296 218 GTDAVDILEGKSYKLR-YPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 218 ~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~ 252 (609)
.... +.........+ .+++.+++.++.++++++.
T Consensus 104 ~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 104 DVDI-ERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred ccCH-HHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 3221 11111111122 2577788877777765443
No 119
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.31 E-value=1.1e-11 Score=117.31 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+++|.+|||||||++++++..+. .. .|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~--~~-----~~t---------------------------------------- 40 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV--TT-----IPT---------------------------------------- 40 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc--cc-----cCC----------------------------------------
Confidence 4579999999999999999999876551 11 121
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.++... . +.. ....+.+|||||..+. ..+...|++++|++|+|++..+.. .-..+.
T Consensus 41 -----~g~~~~--~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~a~~ii~v~D~t~~~-s~~~~~ 96 (168)
T cd04149 41 -----VGFNVE--T--VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDSADRD-RIDEAR 96 (168)
T ss_pred -----cccceE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEeCCchh-hHHHHH
Confidence 001000 0 111 2346889999997542 556778999999999987654422 122222
Q ss_pred HHHHHh----CCCCCceEEEecccCcCCCCC--cHHHHHhccc-cccCCceeeEeeCChhhhcccccH
Q 007296 193 KISREV----DPRGDRTFGVLTKIDLMDKGT--DAVDILEGKS-YKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 193 ~l~~~~----d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
....++ ...+.|+++|.||+|+.+... +..+.+.... ......++.+++.++.|+++.+..
T Consensus 97 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~ 164 (168)
T cd04149 97 QELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTW 164 (168)
T ss_pred HHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHH
Confidence 222222 123579999999999865322 2223321111 111224566777777777665543
No 120
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.30 E-value=9.2e-12 Score=112.57 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=56.6
Q ss_pred EEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 139 LIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 139 lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+|||||=.--. ..+..-......++|.|+++.++......-... +++.+ ..|+|||+||+|+....
T Consensus 40 ~IDTPGEyiE~---------~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~--fa~~f---~~pvIGVITK~Dl~~~~ 105 (143)
T PF10662_consen 40 TIDTPGEYIEN---------PRFYHALIVTAQDADVVLLLQDATEPRSVFPPG--FASMF---NKPVIGVITKIDLPSDD 105 (143)
T ss_pred EEECChhheeC---------HHHHHHHHHHHhhCCEEEEEecCCCCCccCCch--hhccc---CCCEEEEEECccCccch
Confidence 69999944211 112333445566899887765443322222332 34433 48999999999998433
Q ss_pred Cc---HHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 219 TD---AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 219 ~~---~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.+ +.+.|+.... ...|.|+..++++++++.+.+
T Consensus 106 ~~i~~a~~~L~~aG~---~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 106 ANIERAKKWLKNAGV---KEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred hhHHHHHHHHHHcCC---CCeEEEECCCCcCHHHHHHHH
Confidence 33 2344432111 234777888888887765543
No 121
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.30 E-value=1.4e-11 Score=114.43 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=89.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||++++++..+ +......+..+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~------------------------------------------ 37 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYR------------------------------------------ 37 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEE------------------------------------------
Confidence 489999999999999999998874 3333222221100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~ 193 (609)
....+ ......+.+||+||.... ..+...+++..+++|++++..+.+... ..+..
T Consensus 38 ---------~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 94 (160)
T cd00876 38 ---------KTIVV-DGETYTLDILDTAGQEEF-------------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYRE 94 (160)
T ss_pred ---------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00111 111246789999996542 556677889999998877654432111 11222
Q ss_pred HHHHhCC-CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccH
Q 007296 194 ISREVDP-RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 194 l~~~~d~-~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
......+ .+.|+++|+||+|+.+......+...........+|+.+++..+.++++.+..
T Consensus 95 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~ 155 (160)
T cd00876 95 QILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKL 155 (160)
T ss_pred HHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Confidence 2222222 57899999999999863321112221112223356777877777776655443
No 122
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=99.30 E-value=9.5e-10 Score=123.52 Aligned_cols=470 Identities=24% Similarity=0.260 Sum_probs=340.1
Q ss_pred cchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHH
Q 007296 84 EYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIEN 163 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~ 163 (609)
++..+.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...++.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (546)
T COG0699 2 EEFEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDEL 81 (546)
T ss_pred CcchhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHH
Confidence 34566777778888999999999999888888888999999999888888889999999999999888888888777778
Q ss_pred HHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCC
Q 007296 164 MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRS 243 (609)
Q Consensus 164 ~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 243 (609)
+-..++...+++|......+.+..+......++..++ +.++.+.++.+.+.... ++.|+..+.+..
T Consensus 82 ~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 147 (546)
T COG0699 82 LDLGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDAL 147 (546)
T ss_pred HHhhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCch
Confidence 8888999999999888888888888887777777665 77888877766532111 567777777778
Q ss_pred hhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007296 244 QADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAELTRLGKPI 323 (609)
Q Consensus 244 ~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~ 323 (609)
+.++........+...+..+|..++.+.+....++.+++...++..+..+++...|............ .+..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~- 220 (546)
T COG0699 148 ETDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN- 220 (546)
T ss_pred hHHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch-
Confidence 88888888888888899999999999988777899999999999999999998887666555444332 22221
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHhhccCCCCCchhHhHHhhhhHHhhcccCccccCChhHHHHHHHhhcCCCCCCCCch
Q 007296 324 ANDAGGKLYTAMEISRAFDQIFKEHLDGVRPGGDKIYGVFDNQLPAGLKRLQFDKHLSMDNVRKLITEADGYQPHLIAPE 403 (609)
Q Consensus 324 ~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~g~~p~~~~pe 403 (609)
.+......|...+....+| +++... ...+.....+....+.....++.|.+|..+...
T Consensus 221 ---------~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (546)
T COG0699 221 ---------EVLAVIQTLLKRLSELVRG-----ARIRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGL 278 (546)
T ss_pred ---------HHHHHHHHHHHHHHHHhcc-----chhhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccc
Confidence 1334445555555533333 333322 000111112233344555566777777677788
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007296 404 QGYRRLIESCLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDESRRATLQLVDMEC 483 (609)
Q Consensus 404 ~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li~~E~ 483 (609)
.++...+..++..+..+..+|+..+...+.++....+. ......||.+...+...+..+...........+...++.+.
T Consensus 279 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (546)
T COG0699 279 TLLDTLVETPIGQFDTQINQLLRKLISELVRILLKELE-SASSSPFPKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEE 357 (546)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 88999999999999999988888888877776333332 35678999999999999998888888888999999999888
Q ss_pred Cccch---hhhc---------cCc-h--------------hhhhCCCC---------------CC-----------C---
Q 007296 484 CYLTV---EFFR---------KLP-Q--------------DAEKGGNP---------------TH-----------S--- 507 (609)
Q Consensus 484 ~y~~t---d~~~---------~~~-~--------------~~~~~~~~---------------~~-----------~--- 507 (609)
.|+++ ++.. ... + .....+.. .. .
T Consensus 358 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (546)
T COG0699 358 RYINTKHPLFLSLRQAAAILSKVLDNLEALLRSLDDSRLRELSDMGLNSLLSNNLEEHLLGSDFSLYKFLNEFLELKKLD 437 (546)
T ss_pred HHHhhcCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcccchhHHHHHHHHhhcchhhHHHHHHHHhhhccch
Confidence 88873 1110 000 0 00000000 00 0
Q ss_pred -CC--------------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007296 508 -IF--------------DRYSDTYLRRIGSTVLSYVNMVCASLRHSIPKSVVYCQVREAKRSLLDYFFAELGKKEIKQLS 572 (609)
Q Consensus 508 -~~--------------~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~lq~~l~~~L~~~~~~~~~ 572 (609)
.. ........+.+...+.+| .++...+.+.++++++..+.+..+...+......++.... .+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 514 (546)
T COG0699 438 ALLATLGEALRRLTGLLPERKTLEKQLIKSLLESL-LILAQKIRDSVLKAIFELLKNKRKRLAQKQRLKRLYLEQL--ED 514 (546)
T ss_pred hhhccchHHHHHhhcccchhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 00 000011224567899999 9999999999999999999777766666666666665554 77
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007296 573 SLLDEDPAVMQRRTNLAKRLELYRSAQS 600 (609)
Q Consensus 573 ~ll~E~~~i~~kR~~l~~~~~~L~~A~~ 600 (609)
.+..+.+.+.+.|..+.+..+.+.++..
T Consensus 515 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (546)
T COG0699 515 ELLRTAEEILELRLLLEQFLEALKLAAR 542 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999888765
No 123
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.30 E-value=2.5e-11 Score=113.43 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=88.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|++|||||||+|++++..+.+......+
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~----------------------------------------------- 34 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIG----------------------------------------------- 34 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCccc-----------------------------------------------
Confidence 689999999999999999999875221111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH---HH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~---~l 192 (609)
.+.....+.+ ......+.+|||||..+. ..+...+++.+|+++++++..+. .+.+. ++
T Consensus 35 ----~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~ 95 (161)
T cd01863 35 ----VDFKVKTLTV-DGKKVKLAIWDTAGQERF-------------RTLTSSYYRGAQGVILVYDVTRR-DTFTNLETWL 95 (161)
T ss_pred ----ceEEEEEEEE-CCEEEEEEEEECCCchhh-------------hhhhHHHhCCCCEEEEEEECCCH-HHHHhHHHHH
Confidence 0001111111 122346889999996442 44567788999999887664332 11112 22
Q ss_pred HHHH-HhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 193 KISR-EVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 193 ~l~~-~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
..+. .....+.+.++|+||+|+.....+..+... .....+..|+.+++..+.++++.+.
T Consensus 96 ~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~~~~ 155 (161)
T cd01863 96 NELETYSTNNDIVKMLVGNKIDKENREVTREEGLK-FARKHNMLFIETSAKTRDGVQQAFE 155 (161)
T ss_pred HHHHHhCCCCCCcEEEEEECCcccccccCHHHHHH-HHHHcCCEEEEEecCCCCCHHHHHH
Confidence 3222 334567889999999999744333222221 1122345677777777766665443
No 124
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.30 E-value=1.8e-11 Score=118.38 Aligned_cols=109 Identities=13% Similarity=0.175 Sum_probs=64.7
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc--chHHHHHHHHhCCCCCceEEEecccC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~--~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
.+.+|||||..+. ..+...|+++++++|++++..+.... ...++..++...+ +.|+++|+||+|
T Consensus 51 ~l~i~D~~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~piilv~nK~D 116 (193)
T cd04118 51 TLGIWDTAGSERY-------------EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE-HCKIYLCGTKSD 116 (193)
T ss_pred EEEEEECCCchhh-------------hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC-CCCEEEEEEccc
Confidence 5779999996542 44566788899999887654332111 0123333444333 689999999999
Q ss_pred cCCCCCcH----HHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 214 LMDKGTDA----VDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 214 ~~~~~~~~----~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
+.+..... ...+.......+..|+.+++.++.++++++..+....
T Consensus 117 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 117 LIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred ccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 87532110 0111111122335577888888888877776665443
No 125
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=8.5e-12 Score=116.17 Aligned_cols=163 Identities=15% Similarity=0.187 Sum_probs=108.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 31 WDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
+.-|-.|+|+|+.|+|||.|+-++.+..| |-..
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~---------------------------------------------- 38 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTF-TESY---------------------------------------------- 38 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCc-chhh----------------------------------------------
Confidence 34688999999999999999999999876 2211
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC--cccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ--DLAT 188 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~--d~~~ 188 (609)
+.+-|+......+++.+.. ..|.+|||.|..++ +.++.+|.+++|.||+|.+-... --..
T Consensus 39 ----~sTIGVDf~~rt~e~~gk~-iKlQIWDTAGQERF-------------rtit~syYR~ahGii~vyDiT~~~SF~~v 100 (205)
T KOG0084|consen 39 ----ISTIGVDFKIRTVELDGKT-IKLQIWDTAGQERF-------------RTITSSYYRGAHGIIFVYDITKQESFNNV 100 (205)
T ss_pred ----cceeeeEEEEEEeeecceE-EEEEeeeccccHHH-------------hhhhHhhccCCCeEEEEEEcccHHHhhhH
Confidence 1233444444555565544 48999999997654 78899999999999987543221 1122
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCc-eeeEeeCChhhhcccccHHHHHH
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP-WIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..|+.-.+.....+.+.++|.||+|+.+...-..+..+.....+..+ |+.+++.++.++++.+.......
T Consensus 101 ~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 101 KRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred HHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHH
Confidence 34655566666667899999999999876532122222222344555 77777777766666555444433
No 126
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.29 E-value=1.9e-11 Score=115.53 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHh----CCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vl 209 (609)
...+.++||||..+ .+.+...|+++++++|++++..+.+ ....+......+ ...+.|+++|+
T Consensus 42 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 42 KYEVCIFDLGGGAN-------------FRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 35788999999643 2667889999999999987655432 222222222222 22478999999
Q ss_pred cccCcCCCC
Q 007296 210 TKIDLMDKG 218 (609)
Q Consensus 210 tK~D~~~~~ 218 (609)
||.|+.+..
T Consensus 108 NK~Dl~~~~ 116 (167)
T cd04161 108 NKQDKKNAL 116 (167)
T ss_pred eCCCCcCCC
Confidence 999997644
No 127
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.29 E-value=7.8e-12 Score=117.89 Aligned_cols=116 Identities=25% Similarity=0.280 Sum_probs=69.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|.+|||||||++++++..+ +.+ ..|+.....
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~-~~~-----~~~~~~~~~-------------------------------------- 37 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKF-PTE-----YVPTVFDNY-------------------------------------- 37 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCC-----CCCceeeee--------------------------------------
Confidence 689999999999999999999886 221 112111100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~~~l 192 (609)
...+.+ ......+.+|||||.... ..+...+++.+|+++++++..+..-.. ..++
T Consensus 38 --------~~~~~~-~~~~~~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 95 (171)
T cd00157 38 --------SATVTV-DGKQVNLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWI 95 (171)
T ss_pred --------EEEEEE-CCEEEEEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000001 111236889999997653 122335668899998877654421111 1233
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
.......+ +.|+++|+||+|+.+..
T Consensus 96 ~~~~~~~~-~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 96 PEIRHYCP-NVPIILVGTKIDLRDDE 120 (171)
T ss_pred HHHHhhCC-CCCEEEEEccHHhhhch
Confidence 33333333 69999999999997654
No 128
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.29 E-value=2.1e-11 Score=113.54 Aligned_cols=105 Identities=18% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hHH-HHHHHHhCCCCCceEEEec
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDA-IKISREVDPRGDRTFGVLT 210 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~~-l~l~~~~d~~~~rti~Vlt 210 (609)
...+.+|||||.... ..+...++..+++++++++..+.+ +.. ..+ ..+.+.....+.|+++|+|
T Consensus 42 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 42 NVSFTVWDVGGQDKI-------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 357899999996542 456778899999998877655432 111 111 1222333345789999999
Q ss_pred ccCcCCCCCcHHHHHhccc----cccCCceeeEeeCChhhhccccc
Q 007296 211 KIDLMDKGTDAVDILEGKS----YKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
|+|+..... ..++..... ......++.++..++.++++.+.
T Consensus 109 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 109 KQDLPGALS-VSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred ccCCccccC-HHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999976442 222221111 11234577777777776665443
No 129
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.28 E-value=3.5e-11 Score=113.61 Aligned_cols=152 Identities=16% Similarity=0.277 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..-+|+|+|+++||||||++++++..|.+......+ ..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~-----~~------------------------------------- 41 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG-----VE------------------------------------- 41 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCcee-----eE-------------------------------------
Confidence 467899999999999999999998876322111000 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~ 190 (609)
+ ....+.+ ......+.||||||..+ ...+...|++.+|++|++.+..+.+ +. ...
T Consensus 42 -------~--~~~~~~~-~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (170)
T cd04116 42 -------F--LNKDLEV-DGHFVTLQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSN 98 (170)
T ss_pred -------E--EEEEEEE-CCeEEEEEEEeCCChHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHH
Confidence 0 0001111 11234678999999543 2567788999999988775443321 11 122
Q ss_pred HHH-HHHHh---CCCCCceEEEecccCcCCCCCc---HHHHHhccccccC-CceeeEeeCChhhhcccccH
Q 007296 191 AIK-ISREV---DPRGDRTFGVLTKIDLMDKGTD---AVDILEGKSYKLR-YPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 191 ~l~-l~~~~---d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~ 253 (609)
+.. +.... .+.+.|+++|+||+|+.+.... ..++.+ .++ ..|+.+++.++.++.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~~~~~ 165 (170)
T cd04116 99 WKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR----ENGDYPYFETSAKDATNVAAAFEE 165 (170)
T ss_pred HHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH----HCCCCeEEEEECCCCCCHHHHHHH
Confidence 222 12211 1356799999999998743221 222222 222 35777787777776655443
No 130
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.28 E-value=2.7e-11 Score=116.35 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=91.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|++++|||||++++.+..| +.. ..|+...-
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~-----~~~t~~~~--------------------------------------- 36 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEE-----YVPTVFEN--------------------------------------- 36 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCC-----CCCeeeee---------------------------------------
Confidence 699999999999999999999875 322 12211110
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l 192 (609)
+ ...+.........+.+|||||..+. ..+...|++++|++|++++..+.. +.. ..|+
T Consensus 37 ----~---~~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~ 96 (187)
T cd04132 37 ----Y---VTNIQGPNGKIIELALWDTAGQEEY-------------DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWF 96 (187)
T ss_pred ----e---EEEEEecCCcEEEEEEEECCCchhH-------------HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0 0001111112346789999996432 445667899999998876543321 111 1133
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCc----HHHHHhccccccCC-ceeeEeeCChhhhcccccHHHHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTD----AVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~----~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
...+... .+.|.|+|.||.|+.+.... ..+.........+. .|+.+++.++.++++.+........
T Consensus 97 ~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 97 PEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 2233333 36899999999999754310 01111111122333 6777787777888877766654443
No 131
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.28 E-value=1.6e-11 Score=121.30 Aligned_cols=158 Identities=13% Similarity=0.184 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|||+++||||||+++++...| +.... |
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f-~~~~~-----~----------------------------------------- 44 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE-----P----------------------------------------- 44 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCC-CCccC-----C-----------------------------------------
Confidence 456999999999999999999887665 21111 1
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+.++....+.+...+ ....+.+|||||..+. ..+...|+++++++|+|++..+... ....
T Consensus 45 ----tig~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~ 106 (219)
T PLN03071 45 ----TIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT 106 (219)
T ss_pred ----ccceeEEEEEEEECC-eEEEEEEEECCCchhh-------------hhhhHHHcccccEEEEEEeCCCHHHHHHHHH
Confidence 001111111111111 2347889999997653 4566789999999988776544321 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
|+..++... .+.++++|.||+|+.+......++ . .....+..|+.+++.++.++++.+..+....
T Consensus 107 w~~~i~~~~-~~~piilvgNK~Dl~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 107 WHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred HHHHHHHhC-CCCcEEEEEEchhhhhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 444444443 368999999999986433211111 1 1112346788888888888888776665443
No 132
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.28 E-value=3e-11 Score=112.88 Aligned_cols=121 Identities=22% Similarity=0.343 Sum_probs=76.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccccc--ccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV--TRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~--Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.|+++|++|||||||+|+|++..+.|..++.. |+.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~------------------------------------------ 38 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLI------------------------------------------ 38 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeE------------------------------------------
Confidence 48999999999999999999655544443321 1111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCc---eEEEEEecCCCcccchH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPN---CIILAISPANQDLATSD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~---~iIL~v~~a~~d~~~~~ 190 (609)
....+ ...+++|||||+..... +.+..+.+..++..|+...+ .+++ +.+....... .
T Consensus 39 -----------~~~~~----~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~d~~~~~~~-~ 98 (170)
T cd01876 39 -----------NFFNV----NDKFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVL-LIDSRHGPTE-I 98 (170)
T ss_pred -----------EEEEc----cCeEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEE-EEEcCcCCCH-h
Confidence 00111 12889999999865432 33455666777888887643 4444 4444433222 2
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
...+.+.+...+.++++|+||+|++..+
T Consensus 99 ~~~~~~~l~~~~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 99 DLEMLDWLEELGIPFLVVLTKADKLKKS 126 (170)
T ss_pred HHHHHHHHHHcCCCEEEEEEchhcCChH
Confidence 2335555666678999999999997654
No 133
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.27 E-value=1.3e-11 Score=116.72 Aligned_cols=154 Identities=15% Similarity=0.204 Sum_probs=87.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|++||++++|||||++++++..+ |.... |+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~-----~t~---------------------------------------- 35 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF-PERTE-----ATI---------------------------------------- 35 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCccc-----cce----------------------------------------
Confidence 35899999999999999999998775 32211 100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
++......+.+. .....+.+|||||..... ..+...|++++|++|++++..+... ....|
T Consensus 36 -----~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 97 (170)
T cd04115 36 -----GVDFRERTVEID-GERIKVQLWDTAGQERFR------------KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSW 97 (170)
T ss_pred -----eEEEEEEEEEEC-CeEEEEEEEeCCChHHHH------------HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHH
Confidence 000000011111 122468899999964321 2457788999999988776543211 11223
Q ss_pred HHHHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCC---hhhhcccc
Q 007296 192 IKISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRS---QADINKSV 251 (609)
Q Consensus 192 l~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s---~~~i~~~~ 251 (609)
+..+... .....|+++|.||+|+........+...........+|+.+++.+ ..++++.+
T Consensus 98 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 98 IEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 3333332 234689999999999875432111111111122346788888776 34444433
No 134
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.27 E-value=5.6e-11 Score=114.18 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-++|+++|.+||||||++++++|..+- . ..+|.-|+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~--~-~~~t~~~~~~-------------------------------------- 54 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA--Q-HQPTQHPTSE-------------------------------------- 54 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccccceE--------------------------------------
Confidence 4589999999999999999999997651 0 0112222110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccchH-
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LATSD- 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~~~- 190 (609)
.+.+ +...+.++||||.... +.+...|+.+++++|++++..+.+ +....
T Consensus 55 -------------~~~~---~~~~~~~~D~~G~~~~-------------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~ 105 (184)
T smart00178 55 -------------ELAI---GNIKFTTFDLGGHQQA-------------RRLWKDYFPEVNGIVYLVDAYDKERFAESKR 105 (184)
T ss_pred -------------EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCcHHHHHHHHH
Confidence 0111 2346889999997542 566788999999999987654432 11111
Q ss_pred HH-HHHHHhCCCCCceEEEecccCcCC
Q 007296 191 AI-KISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 191 ~l-~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
.+ .+.+.....+.|+++|+||+|+..
T Consensus 106 ~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 106 ELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHcChhhcCCCEEEEEeCccccC
Confidence 11 122211224689999999999854
No 135
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.27 E-value=4e-11 Score=117.71 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=83.9
Q ss_pred CCCeEE-EEcCCCCCHHHHHHHhhCCCcCccc-ccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIA-VVGGQSSGKSSVLESVVGKDFLPRG-SGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~Iv-VvG~~ssGKSSllnal~g~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
.-|..+ ++|..++||||++|||.+...-|++ .+.||+.++..+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~----------------------------------- 81 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLR----------------------------------- 81 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHH-----------------------------------
Confidence 456666 9999999999999999976655555 455666553222
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCC-Ccccch
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPAN-QDLATS 189 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~-~d~~~~ 189 (609)
...+..+|+||||||+.+...+ ....+..++.|+.+.|.+++ +.++. .++...
T Consensus 82 -------------------~~~~~~~l~lwDtPG~gdg~~~------D~~~r~~~~d~l~~~DLvL~-l~~~~draL~~d 135 (296)
T COG3596 82 -------------------LSYDGENLVLWDTPGLGDGKDK------DAEHRQLYRDYLPKLDLVLW-LIKADDRALGTD 135 (296)
T ss_pred -------------------hhccccceEEecCCCcccchhh------hHHHHHHHHHHhhhccEEEE-eccCCCccccCC
Confidence 1122358999999999874322 33457888999999996544 55554 345444
Q ss_pred HHHHHHHHhC-C-CCCceEEEecccCcCCCC
Q 007296 190 DAIKISREVD-P-RGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 190 ~~l~l~~~~d-~-~~~rti~VltK~D~~~~~ 218 (609)
. ++++.+- + .++|+++|+|.+|...++
T Consensus 136 ~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 136 E--DFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred H--HHHHHHHHhccCceeEEEEehhhhhccc
Confidence 4 3444333 2 238999999999998776
No 136
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.27 E-value=2.8e-11 Score=115.05 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=85.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+++|.+++|||||++++++..+.+. .|+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-------~~t~---------------------------------------- 47 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-------SPTI---------------------------------------- 47 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-------CCcc----------------------------------------
Confidence 46899999999999999999988765211 1100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~ 190 (609)
|. +...+.+ +...+.++||||.... ..+...|++++|++|+|++..+.+ +.. ..
T Consensus 48 -~~------~~~~~~~---~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~ 104 (174)
T cd04153 48 -GS------NVEEIVY---KNIRFLMWDIGGQESL-------------RSSWNTYYTNTDAVILVIDSTDRERLPLTKEE 104 (174)
T ss_pred -cc------ceEEEEE---CCeEEEEEECCCCHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00 0001111 2357889999997542 455678899999999877654321 111 11
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhccc-cccCCceeeEeeCChhhhcccccH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKS-YKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
...+.+.....+.|+++|+||+|+.+... +..+.+.... ......++.+++.++.++++.+..
T Consensus 105 l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~ 170 (174)
T cd04153 105 LYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred HHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHH
Confidence 11122222224589999999999865321 1122221111 112234566666666777665543
No 137
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.27 E-value=2.2e-11 Score=116.77 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=89.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|+.++|||||++++.+..| +.... .|-
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~-~T~---------------------------------------------- 33 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDYI-QTL---------------------------------------------- 33 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCC-Ccc----------------------------------------------
Confidence 689999999999999999998876 22111 110
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~ 193 (609)
+.......+.+.+ ....+.+|||+|..+. ..+...|++++++++++++..+...-. ..|+.
T Consensus 34 ---g~~~~~~~i~~~~-~~~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~ 96 (182)
T cd04128 34 ---GVNFMEKTISIRG-TEITFSIWDLGGQREF-------------INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYR 96 (182)
T ss_pred ---ceEEEEEEEEECC-EEEEEEEEeCCCchhH-------------HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 0000001111211 1246889999996543 456778999999999887654432111 23555
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCC--c---HHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGT--D---AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~--~---~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++...+...+ |+|.||+|+...-. + ..+.........+..|+.+++.++.++++.+.....
T Consensus 97 ~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~ 163 (182)
T cd04128 97 QARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLA 163 (182)
T ss_pred HHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 55555555555 78999999963211 1 111111111122345777777777777766654443
No 138
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.27 E-value=3.3e-11 Score=114.94 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=91.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|.+|+|||||++++++..+ +.....++..... .
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~-~---------------------------------------- 40 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS-K---------------------------------------- 40 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE-E----------------------------------------
Confidence 689999999999999999998875 3222111111100 0
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH----
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA---- 191 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~---- 191 (609)
.+.+ ......+.+|||||..+. ..+...+...+++++++++..+.. .-+..
T Consensus 41 ----------~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~ 95 (180)
T cd04137 41 ----------IIRY-KGQDYHLEIVDTAGQDEY-------------SILPQKYSIGIHGYILVYSVTSRK-SFEVVKVIY 95 (180)
T ss_pred ----------EEEE-CCEEEEEEEEECCChHhh-------------HHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHH
Confidence 0001 111235789999996542 344557888899988876554321 11111
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..+.+.....+.|.|+|+||+|+........+.........+..++.+++.++.++.+.+.......
T Consensus 96 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 96 DKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred HHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2244444455689999999999865332111111111123335677888888777777666555443
No 139
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.26 E-value=2e-11 Score=114.81 Aligned_cols=107 Identities=17% Similarity=0.186 Sum_probs=60.9
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---hHHHHHHHHhC--CCCCceEEEe
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVD--PRGDRTFGVL 209 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~~~l~l~~~~d--~~~~rti~Vl 209 (609)
..+.+|||||..... ......+++.+|++|++++..+. .+- ..+...+.... ..+.|+++|+
T Consensus 47 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piilv~ 113 (165)
T cd04146 47 VSLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSITDR-SSFDEISQLKQLIREIKKRDREIPVILVG 113 (165)
T ss_pred EEEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEECCCH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 357799999977421 22355688899999887654332 111 22333444443 3468999999
Q ss_pred cccCcCCCCCcHHHHHhccccccCCceeeEeeCCh-hhhcccccHH
Q 007296 210 TKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQ-ADINKSVDMI 254 (609)
Q Consensus 210 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~-~~i~~~~~~~ 254 (609)
||+|+.....-..+.........+.+|+.+++..+ .++++.+..+
T Consensus 114 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 114 NKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 99998643221111111111223456777777665 4666655443
No 140
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.26 E-value=3.9e-11 Score=116.65 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=63.6
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH---HHH-HHHHhCCCCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIK-ISREVDPRGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~---~l~-l~~~~d~~~~rti~Vlt 210 (609)
..+.||||||.... ..+...|+.++|++|++++..+ ...... +.. +.......+.|+|+|+|
T Consensus 47 ~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYSF-------------PAMRKLSIQNSDAFALVYAVDD-PESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchhh-------------hHHHHHHhhcCCEEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 46789999997653 3456678999999988775433 211111 222 22223335789999999
Q ss_pred ccCcCCCCCc--HHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 211 KIDLMDKGTD--AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 211 K~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
|+|+...... ..+..+........+|+.+++.++.++++++......
T Consensus 113 K~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 161 (198)
T cd04147 113 KADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQ 161 (198)
T ss_pred ccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHH
Confidence 9999753211 1111110011223456777777777777666555443
No 141
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.25 E-value=8.3e-11 Score=113.30 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-++|+++|++|||||||++++++..+ . ...+|..|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~-~--~~~~T~~~~~--------------------------------------- 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL-A--QHVPTLHPTS--------------------------------------- 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-c--ccCCccCcce---------------------------------------
Confidence 578999999999999999999998764 1 1112222210
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~ 190 (609)
..+.+ +...+.++||||.... ..+...|+++++++|++++..+..... ..
T Consensus 56 ------------~~i~~---~~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~ 107 (190)
T cd00879 56 ------------EELTI---GNIKFKTFDLGGHEQA-------------RRLWKDYFPEVDGIVFLVDAADPERFQESKE 107 (190)
T ss_pred ------------EEEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 01111 1246789999995432 456778999999998877654321111 11
Q ss_pred H-HHHHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhcccc------------ccCCceeeEeeCChhhhcccccHH
Q 007296 191 A-IKISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSY------------KLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ~-l~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~------------~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+ ..+.+.....+.|+++|+||+|+.+... +..+.+..... .....|+.+++.+++|+++.+..+
T Consensus 108 ~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l 186 (190)
T cd00879 108 ELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWL 186 (190)
T ss_pred HHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHH
Confidence 1 1122222234689999999999864322 22333321110 011236667777777776655544
No 142
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=2.2e-11 Score=115.14 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=112.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 31 WDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
|..+-.|++||+++||||+++.++....| -|.+..+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f-------~~~~~sT------------------------------------- 44 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSF-------NTSFIST------------------------------------- 44 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccC-------cCCccce-------------------------------------
Confidence 35688999999999999999999998776 1111111
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LAT 188 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~ 188 (609)
-|+..+.-.+.+.+ ....|.+|||.|..+. +.++.+|++.+..++|+++-.+.. ...
T Consensus 45 -------iGIDFk~kti~l~g-~~i~lQiWDtaGQerf-------------~ti~~sYyrgA~gi~LvyDitne~Sfeni 103 (207)
T KOG0078|consen 45 -------IGIDFKIKTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDITNEKSFENI 103 (207)
T ss_pred -------EEEEEEEEEEEeCC-eEEEEEEEEcccchhH-------------HHHHHHHHhhcCeeEEEEEccchHHHHHH
Confidence 11222222222222 3357889999998765 889999999999999987654431 122
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..|++.+++..+.+.+.++|.||+|+.++..-..+.-+.....++..|+.+++.++.++.+.+..+.+..
T Consensus 104 ~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 104 RNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred HHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 4477888888888999999999999987554222222222344567789999988888877665555443
No 143
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.25 E-value=2.4e-11 Score=114.69 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=66.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---hHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~~~l~l~~~~d~~~~rti~VltK 211 (609)
..+.+|||||.... ..+...|+..+|++|+|++..+ ..+- ..++..+....+ +.|+++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~-~~piiiv~nK 113 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFDVTS-RVTYKNVPNWHRDLVRVCG-NIPIVLCGNK 113 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 46789999997543 2334567889999988765433 2111 223334444443 6899999999
Q ss_pred cCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 212 IDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
+|+.+...... ..+ ........|+.+++.++.++++.+..+....
T Consensus 114 ~Dl~~~~~~~~-~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 114 VDIKDRKVKAK-QIT-FHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred hhcccccCCHH-HHH-HHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 99974332211 111 1112345688899988888888777665443
No 144
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.25 E-value=2.1e-11 Score=115.56 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK 211 (609)
..+.+|||||.... ..+...+++++|++|++++..+.. +.. ..|+.......+ +.|+|+|.||
T Consensus 46 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCccc-------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEecC
Confidence 36889999997543 334556888999999876543321 111 123333333333 6899999999
Q ss_pred cCcCCC
Q 007296 212 IDLMDK 217 (609)
Q Consensus 212 ~D~~~~ 217 (609)
+|+.+.
T Consensus 112 ~Dl~~~ 117 (174)
T smart00174 112 LDLRED 117 (174)
T ss_pred hhhhhC
Confidence 999753
No 145
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.24 E-value=3.1e-11 Score=113.06 Aligned_cols=104 Identities=16% Similarity=0.239 Sum_probs=60.1
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHh----CCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vl 209 (609)
...+.+|||||..+. ..+...|++++|++|+|++..+.+ .-..+.+....+ .....|+++|+
T Consensus 43 ~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~~-s~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRE-RIGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 356899999997542 567788999999999887654432 112222222222 12357999999
Q ss_pred cccCcCCCCC--cHHHHHhccccccCCc--eeeEeeCChhhhccccc
Q 007296 210 TKIDLMDKGT--DAVDILEGKSYKLRYP--WIGVVNRSQADINKSVD 252 (609)
Q Consensus 210 tK~D~~~~~~--~~~~~l~~~~~~l~~g--~~~v~~~s~~~i~~~~~ 252 (609)
||.|+.+... +..+.+..... ...+ ++.+++.++.|+++.+.
T Consensus 109 NK~Dl~~~~~~~~i~~~~~~~~~-~~~~~~~~~~Sak~g~gv~~~~~ 154 (159)
T cd04150 109 NKQDLPNAMSAAEVTDKLGLHSL-RNRNWYIQATCATSGDGLYEGLD 154 (159)
T ss_pred ECCCCCCCCCHHHHHHHhCcccc-CCCCEEEEEeeCCCCCCHHHHHH
Confidence 9999965432 11222211111 1123 34566677777766544
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.24 E-value=6.2e-11 Score=114.85 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=48.2
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ..++..|++.+|++++|++..+ +...+ ...+.+.+...+.|.++|+||+|
T Consensus 64 ~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~~ilV~d~~~-~~~~~-~~~~~~~~~~~~~p~iiv~NK~D 128 (194)
T cd01891 64 DTKINIVDTPGHADF-------------GGEVERVLSMVDGVLLLVDASE-GPMPQ-TRFVLKKALELGLKPIVVINKID 128 (194)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHhcCEEEEEEECCC-CccHH-HHHHHHHHHHcCCCEEEEEECCC
Confidence 457899999997653 5567889999999988765533 22222 12234444445789999999999
Q ss_pred cCCC
Q 007296 214 LMDK 217 (609)
Q Consensus 214 ~~~~ 217 (609)
+.+.
T Consensus 129 l~~~ 132 (194)
T cd01891 129 RPDA 132 (194)
T ss_pred CCCC
Confidence 9754
No 147
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.23 E-value=4.9e-11 Score=113.64 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=73.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-+|+|||+.++|||||++++.+..| |.... |+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~-----pt~~~--------------------------------------- 36 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYV-----PTVFD--------------------------------------- 36 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-----Cceee---------------------------------------
Confidence 3699999999999999999998775 33221 11000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 191 (609)
.+ .+.+.+. .....+.||||||..+. ..+...|+++++++|+|++..+.+ +.. ..|
T Consensus 37 ----~~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 37 ----NY---AVTVMIG-GEPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred ----ee---EEEEEEC-CEEEEEEEEECCCccch-------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111111 12246889999997653 345567899999999987554322 111 124
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
....+...+ +.|+|+|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 444444443 5899999999998654
No 148
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.23 E-value=5.7e-11 Score=113.12 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHh----CCCCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPRGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~----d~~~~rti~Vlt 210 (609)
..+.+|||||..+. ..+...|+++++++|+|++..+.+ .-..+......+ ...+.|+++|+|
T Consensus 57 ~~l~l~D~~G~~~~-------------~~~~~~~~~~ad~ii~v~D~t~~~-s~~~~~~~l~~~~~~~~~~~~piilv~N 122 (175)
T smart00177 57 ISFTVWDVGGQDKI-------------RPLWRHYYTNTQGLIFVVDSNDRD-RIDEAREELHRMLNEDELRDAVILVFAN 122 (175)
T ss_pred EEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECCCHH-HHHHHHHHHHHHhhCHhhcCCcEEEEEe
Confidence 57889999997542 567889999999999987654432 112222222222 123578999999
Q ss_pred ccCcCCCCC--cHHHHHhcccccc-CCceeeEeeCChhhhcccccHH
Q 007296 211 KIDLMDKGT--DAVDILEGKSYKL-RYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 211 K~D~~~~~~--~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
|.|+.+... +..+.+.-....- ..-|+.++++++.|+++.+..+
T Consensus 123 K~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 123 KQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred CcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 999865432 1222221011111 1123356777777777665544
No 149
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.23 E-value=1.7e-10 Score=114.28 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=65.3
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc-CCceEEEEEecCCCccc--chHHHHHHHHhC-CCCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE-KPNCIILAISPANQDLA--TSDAIKISREVD-PRGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iIL~v~~a~~d~~--~~~~l~l~~~~d-~~~~rti~Vlt 210 (609)
..+.+|||||... .+...++. ++|++|+|++..+..-. ...++..+.... ..+.|+|+|.|
T Consensus 50 ~~l~i~Dt~G~~~---------------~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~N 114 (221)
T cd04148 50 STLVVIDHWEQEM---------------WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGN 114 (221)
T ss_pred EEEEEEeCCCcch---------------HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4688999999751 11223455 89999887655432111 122333333332 34689999999
Q ss_pred ccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHH
Q 007296 211 KIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
|+|+.+......+.........+.+|+.+++..+.++++++..+.....
T Consensus 115 K~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 115 KSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9999754321111111111223457888888888898888776665544
No 150
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.23 E-value=8.3e-11 Score=116.01 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=70.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|||+++||||||++++++..| +. . ..|--+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-~~-~-~~Tig~-------------------------------------------- 34 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-KD-T-VSTVGG-------------------------------------------- 34 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CC-C-CCccce--------------------------------------------
Confidence 689999999999999999999886 21 1 111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~~l~ 193 (609)
.+ ....+ ...++.||||||.... ..+...|+++++++|++++..+.. +.. ..++.
T Consensus 35 ---~~----~~~~~---~~~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~ 91 (220)
T cd04126 35 ---AF----YLKQW---GPYNISIWDTAGREQF-------------HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFL 91 (220)
T ss_pred ---EE----EEEEe---eEEEEEEEeCCCcccc-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 00001 1236889999997543 456778899999998876543321 111 11222
Q ss_pred HHHHhCCCCCceEEEecccCcCC
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~ 216 (609)
...+....+.++|+|.||+|+.+
T Consensus 92 ~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 92 GLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHhcCCCCcEEEEEECccccc
Confidence 22333344678999999999975
No 151
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.23 E-value=8.5e-11 Score=110.70 Aligned_cols=113 Identities=18% Similarity=0.277 Sum_probs=72.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
||+++|+++||||||++++++..+ +... .|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~p-------------------------------------------- 30 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VP-------------------------------------------- 30 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----cc--------------------------------------------
Confidence 689999999999999999998765 2111 11
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 195 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~ 195 (609)
+.++. .+ .+.. ....+.+|||||..+. ..+...|++++|++|++++..+.. ....+....
T Consensus 31 -t~g~~--~~--~i~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~l 90 (164)
T cd04162 31 -TTGFN--SV--AIPT-QDAIMELLEIGGSQNL-------------RKYWKRYLSGSQGLIFVVDSADSE-RLPLARQEL 90 (164)
T ss_pred -cCCcc--eE--EEee-CCeEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHHH
Confidence 01111 11 1222 2357899999996543 556778999999999877654422 111121222
Q ss_pred HHh--CCCCCceEEEecccCcCCCC
Q 007296 196 REV--DPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 196 ~~~--d~~~~rti~VltK~D~~~~~ 218 (609)
..+ ...+.|+++|.||.|+....
T Consensus 91 ~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 91 HQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 222 12578999999999986543
No 152
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.8e-11 Score=121.00 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=104.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcc---cccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHH
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPR---GSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDE 109 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~---~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 109 (609)
.-|.|.++|..|.||||+|+.|++.++ |. |..++|.+-..+....+...-.=....-.+...|..++.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~-------- 127 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNK-------- 127 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhh--------
Confidence 689999999999999999999999985 62 333445444333321111100000000111122222222
Q ss_pred hhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch
Q 007296 110 TDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS 189 (609)
Q Consensus 110 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~ 189 (609)
.+.+|-+...+..+.++-...+++|||||+..... |.-+-.-.+...+.-|+.++|.|||+.++..-|++..
T Consensus 128 ------FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeK--QrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdE 199 (532)
T KOG1954|consen 128 ------FGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEK--QRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE 199 (532)
T ss_pred ------hHHHHHHHHHHhcCChhhhhheeeeccCcccccch--hcccccCChHHHHHHHHHhccEEEEEechhhccccHH
Confidence 22233333334445566667899999999987532 2111222345677889999999999999888787654
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
-. ..+..+......+-+|+||.|.++..
T Consensus 200 f~-~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 200 FK-RVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred HH-HHHHHhhCCcceeEEEeccccccCHH
Confidence 43 46777777788999999999999754
No 153
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.22 E-value=1e-10 Score=116.18 Aligned_cols=123 Identities=18% Similarity=0.224 Sum_probs=79.7
Q ss_pred CCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHH
Q 007296 27 LPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEI 106 (609)
Q Consensus 27 ~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i 106 (609)
.|.+.+..-+|+|||+.++|||||++++++..| +... .|+...
T Consensus 6 ~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi~~------------------------------- 48 (232)
T cd04174 6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTVFE------------------------------- 48 (232)
T ss_pred cCcCceeeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCceee-------------------------------
Confidence 344445667999999999999999999998876 3221 121100
Q ss_pred HHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc
Q 007296 107 SDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL 186 (609)
Q Consensus 107 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~ 186 (609)
.+ ...+.+. .....|.||||||.... ..+...|+++++++|||.+..+.+-
T Consensus 49 ------------~~---~~~i~~~-~~~v~l~iwDTaG~e~~-------------~~~~~~~~~~ad~vIlVyDit~~~S 99 (232)
T cd04174 49 ------------NY---TAGLETE-EQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPET 99 (232)
T ss_pred ------------ee---EEEEEEC-CEEEEEEEEeCCCchhh-------------HHHHHHHcCCCcEEEEEEECCChHH
Confidence 00 0111121 12347889999996543 5567789999999998876544321
Q ss_pred -c--chHHHHHHHHhCCCCCceEEEecccCcCC
Q 007296 187 -A--TSDAIKISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 187 -~--~~~~l~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
. ...|...++...+ +.++|+|.||+|+.+
T Consensus 100 f~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 100 VDSALKKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 1 1345555555554 579999999999864
No 154
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.21 E-value=1.8e-10 Score=115.52 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=77.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
.-.+|+|+|.+|||||||+|+|+|....+.+.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 568999999999999999999999876444322 2333221111
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCC-cccc
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQ-DLAT 188 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~-d~~~ 188 (609)
. ..+...+++|||||+...... ....+.+.+.+..|++ ..+++++ |...+. ....
T Consensus 74 -----------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~idvIL~-V~rlD~~r~~~ 131 (249)
T cd01853 74 -----------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPDVVLY-VDRLDMYRRDY 131 (249)
T ss_pred -----------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCCEEEE-EEcCCCCCCCH
Confidence 1 112357899999999865321 1133445566777886 4566544 443332 2222
Q ss_pred h--HHHHHHHHhCCC--CCceEEEecccCcCCCCC
Q 007296 189 S--DAIKISREVDPR--GDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 189 ~--~~l~l~~~~d~~--~~rti~VltK~D~~~~~~ 219 (609)
. ..++..++.-.. -.++++|+||+|..++..
T Consensus 132 ~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 132 LDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 2 233333322111 157999999999986553
No 155
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.21 E-value=1.5e-10 Score=111.08 Aligned_cols=106 Identities=18% Similarity=0.327 Sum_probs=60.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHh-CC---CCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV-DP---RGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~-d~---~~~rti~Vlt 210 (609)
..+.+|||||..+. +.+...|++++|++|++++..+.+- ...+......+ .. ...|+++|+|
T Consensus 61 ~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~N 126 (182)
T PTZ00133 61 LKFTMWDVGGQDKL-------------RPLWRHYYQNTNGLIFVVDSNDRER-IGDAREELERMLSEDELRDAVLLVFAN 126 (182)
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhCHhhcCCCEEEEEe
Confidence 47889999997542 5678899999999998876543221 11222222222 11 3478999999
Q ss_pred ccCcCCCCCcHHHHHh--ccccccCCce--eeEeeCChhhhcccccHHH
Q 007296 211 KIDLMDKGTDAVDILE--GKSYKLRYPW--IGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~--~~~~~l~~g~--~~v~~~s~~~i~~~~~~~~ 255 (609)
|.|+.+... ..++.. +....-...| +.+++.++.|+++.+..+.
T Consensus 127 K~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 127 KQDLPNAMS-TTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCCCCCCC-HHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 999864322 112211 1110001122 3456666677776665544
No 156
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.21 E-value=9.3e-11 Score=110.99 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+..+|+++|+++||||||++++++..|-|.....++. +
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~-~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIK-P----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccC-c-----------------------------------------
Confidence 4678999999999999999999998862122111110 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.+.... +.+.+ ....+.++|++|-... ..+...|++++|++|++++..+ ...-....
T Consensus 41 ------~~~~~~--~~~~~-~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d~~~-~~s~~~~~ 97 (169)
T cd01892 41 ------RYAVNT--VEVYG-QEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYDSSD-PKSFSYCA 97 (169)
T ss_pred ------ceEEEE--EEECC-eEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEeCCC-HHHHHHHH
Confidence 000011 11111 2246789999996543 3345678899999988765433 21111222
Q ss_pred HHHHHhC-CCCCceEEEecccCcCCCCC----cHHHHHhccccccCC-ceeeEeeCChhhhcccccHH
Q 007296 193 KISREVD-PRGDRTFGVLTKIDLMDKGT----DAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l~~~~d-~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 254 (609)
.+.+.+. ..+.|+++|+||+|+.+... ...++. ..++. .++.+++.++.++++.+..+
T Consensus 98 ~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 98 EVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFC----RKLGLPPPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred HHHHHhccCCCCeEEEEEEcccccccccccccCHHHHH----HHcCCCCCEEEEeccCccHHHHHHHH
Confidence 3444442 33689999999999965432 112221 11222 34677777777776655443
No 157
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.20 E-value=5.6e-11 Score=116.81 Aligned_cols=132 Identities=26% Similarity=0.369 Sum_probs=75.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc--ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG--IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|+++|..+|||||+.|+|+|.+.++.+.+ .||+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-------------------------------------- 43 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-------------------------------------- 43 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee--------------------------------------
Confidence 699999999999999999999998777632 4554442222
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH--H
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD--A 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~--~ 191 (609)
. ..+...+++|||||+...... ++++.+.+...+.....++++++|| ++.+ .+...+ .
T Consensus 44 ---------------~-~~~g~~v~VIDTPGl~d~~~~--~~~~~~~i~~~l~~~~~g~ha~llV-i~~~-r~t~~~~~~ 103 (212)
T PF04548_consen 44 ---------------G-EVDGRQVTVIDTPGLFDSDGS--DEEIIREIKRCLSLCSPGPHAFLLV-IPLG-RFTEEDREV 103 (212)
T ss_dssp ---------------E-EETTEEEEEEE--SSEETTEE--HHHHHHHHHHHHHHTTT-ESEEEEE-EETT-B-SHHHHHH
T ss_pred ---------------e-eecceEEEEEeCCCCCCCccc--HHHHHHHHHHHHHhccCCCeEEEEE-EecC-cchHHHHHH
Confidence 0 112357899999999765331 2333333444333344568888776 4555 454433 3
Q ss_pred HHHHHH-hCC-CCCceEEEecccCcCCCCCcHHHHHh
Q 007296 192 IKISRE-VDP-RGDRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 192 l~l~~~-~d~-~~~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
++.... +.+ .-+.+|+|+|..|...... ..++++
T Consensus 104 l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-~~~~l~ 139 (212)
T PF04548_consen 104 LELLQEIFGEEIWKHTIVVFTHADELEDDS-LEDYLK 139 (212)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-HHHHHH
T ss_pred HHHHHHHccHHHHhHhhHHhhhcccccccc-HHHHHh
Confidence 333333 332 1367999999999887654 333433
No 158
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.20 E-value=1.6e-10 Score=110.71 Aligned_cols=151 Identities=17% Similarity=0.236 Sum_probs=88.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+++|.++||||||++++....+ +. . .||
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~-~-----~pt----------------------------------------- 48 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI-VT-T-----IPT----------------------------------------- 48 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-cc-c-----cCC-----------------------------------------
Confidence 46899999999999999999986554 21 1 121
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.++.. .. +.. ....+.+|||||..+ ...+...|++++|++|+|++..+.+ .-..+..
T Consensus 49 ----~g~~~--~~--~~~-~~~~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V~D~s~~~-s~~~~~~ 105 (181)
T PLN00223 49 ----IGFNV--ET--VEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRD-RVVEARD 105 (181)
T ss_pred ----cceeE--EE--EEE-CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCcHH-HHHHHHH
Confidence 01110 11 111 234688999999543 2677889999999999887654322 1222222
Q ss_pred HHHHh-C---CCCCceEEEecccCcCCCCCcHHHHHhcccc-cc-CCc--eeeEeeCChhhhcccccHHHH
Q 007296 194 ISREV-D---PRGDRTFGVLTKIDLMDKGTDAVDILEGKSY-KL-RYP--WIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 194 l~~~~-d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~-~l-~~g--~~~v~~~s~~~i~~~~~~~~~ 256 (609)
....+ . ..+.|+++|+||.|+.+... ..++...... .+ ... ++.+++.+++|+.+.+..+..
T Consensus 106 ~l~~~l~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 175 (181)
T PLN00223 106 ELHRMLNEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHHhcCHhhCCCCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHH
Confidence 22222 1 23579999999999865432 2222211001 11 112 234577777887776665543
No 159
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.20 E-value=9.5e-11 Score=110.91 Aligned_cols=150 Identities=19% Similarity=0.356 Sum_probs=85.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+++|.++||||||+++|.|..+ +. ..|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~------~~~----------------------------------------- 44 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SH------ITP----------------------------------------- 44 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cc------cCC-----------------------------------------
Confidence 467899999999999999999999754 10 011
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~ 190 (609)
+.++.... +.. +...+.+||+||.... ..++..|++.+++++++++..+..... ..
T Consensus 45 ----t~g~~~~~----i~~-~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~ 102 (173)
T cd04155 45 ----TQGFNIKT----VQS-DGFKLNVWDIGGQRAI-------------RPYWRNYFENTDCLIYVIDSADKKRLEEAGA 102 (173)
T ss_pred ----CCCcceEE----EEE-CCEEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHH
Confidence 01111011 111 1346889999996432 456778889999998877554321111 11
Q ss_pred HH-HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcc-ccccC---CceeeEeeCChhhhcccccH
Q 007296 191 AI-KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGK-SYKLR---YPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 191 ~l-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~-~~~l~---~g~~~v~~~s~~~i~~~~~~ 253 (609)
++ .+.+.....+.|+++|+||+|+.+... ..++.+.. ...+. ..++.+++.+++|+++.+..
T Consensus 103 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~ 169 (173)
T cd04155 103 ELVELLEEEKLAGVPVLVFANKQDLATAAP-AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNW 169 (173)
T ss_pred HHHHHHhChhhcCCCEEEEEECCCCccCCC-HHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHH
Confidence 11 122222334689999999999875432 22222211 11111 12345666666776665543
No 160
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.20 E-value=2.7e-10 Score=115.94 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccc-cccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGS-GIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
.+..+|+|+|.+|+||||++|+|+|.+....+. ..+|..|+...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~----------------------------------- 80 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS----------------------------------- 80 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE-----------------------------------
Confidence 468899999999999999999999987522221 11122221110
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCC-ccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQ-DLA 187 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~-d~~ 187 (609)
. ..+...+++|||||+.... ...+...+.++.|+. .+|++++|. ..+. ...
T Consensus 81 ------------------~-~~~G~~l~VIDTPGL~d~~------~~~e~~~~~ik~~l~~~g~DvVLyV~-rLD~~R~~ 134 (313)
T TIGR00991 81 ------------------R-TRAGFTLNIIDTPGLIEGG------YINDQAVNIIKRFLLGKTIDVLLYVD-RLDAYRVD 134 (313)
T ss_pred ------------------E-EECCeEEEEEECCCCCchH------HHHHHHHHHHHHHhhcCCCCEEEEEe-ccCcccCC
Confidence 0 1133578999999998632 233444566666665 478776653 3221 122
Q ss_pred --chHHHHHHHHhC--CCCCceEEEecccCcCCC
Q 007296 188 --TSDAIKISREVD--PRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 188 --~~~~l~l~~~~d--~~~~rti~VltK~D~~~~ 217 (609)
....++....+- ..-.++|+|+|+.|..++
T Consensus 135 ~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 135 TLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence 123344443332 112679999999998854
No 161
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.19 E-value=5e-11 Score=117.97 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=49.1
Q ss_pred ecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh-cCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEE
Q 007296 130 FSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI-EKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGV 208 (609)
Q Consensus 130 ~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi-~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~V 208 (609)
+......++|+||||..+. .+.+..... ..+|.+++++ ++..+...++ ..++..+...+.|.++|
T Consensus 79 ~~~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVv-da~~g~~~~d-~~~l~~l~~~~ip~ivv 144 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVV-AANAGIIGMT-KEHLGLALALNIPVFVV 144 (224)
T ss_pred eeeCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEE-ECCCCCcHHH-HHHHHHHHHcCCCEEEE
Confidence 3344567999999996542 133333322 2688887755 5555554444 34666677778999999
Q ss_pred ecccCcCCCC
Q 007296 209 LTKIDLMDKG 218 (609)
Q Consensus 209 ltK~D~~~~~ 218 (609)
+||+|+.++.
T Consensus 145 vNK~D~~~~~ 154 (224)
T cd04165 145 VTKIDLAPAN 154 (224)
T ss_pred EECccccCHH
Confidence 9999997643
No 162
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.9e-11 Score=113.38 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=100.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
--.|+++|+.|+|||||+.+++..+| +.....+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F-~e~~e~T---------------------------------------------- 37 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQF-HENIEPT---------------------------------------------- 37 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcc-ccccccc----------------------------------------------
Confidence 35799999999999999999998887 2211100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+..|-...+. + +.....+.+|||.|..+. +.++.-|++++++.|+|.+- +..-+-..+..
T Consensus 38 --IGaaF~tktv~--~-~~~~ikfeIWDTAGQERy-------------~slapMYyRgA~AAivvYDi-t~~~SF~~aK~ 98 (200)
T KOG0092|consen 38 --IGAAFLTKTVT--V-DDNTIKFEIWDTAGQERY-------------HSLAPMYYRGANAAIVVYDI-TDEESFEKAKN 98 (200)
T ss_pred --cccEEEEEEEE--e-CCcEEEEEEEEcCCcccc-------------cccccceecCCcEEEEEEec-ccHHHHHHHHH
Confidence 11122212211 1 222456779999998875 56788899999999886533 32222233333
Q ss_pred HHHHhCCCC---CceEEEecccCcCCCCC----cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHH
Q 007296 194 ISREVDPRG---DRTFGVLTKIDLMDKGT----DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREH 261 (609)
Q Consensus 194 l~~~~d~~~---~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~ 261 (609)
+.+++.... .-+-+|.||+|+.+... ++..+. ...++-|+.+++.++.++++.+..+.....+.
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yA----e~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYA----ESQGLLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHH----HhcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence 444444333 33456899999998443 233333 33568899999999999888777666554433
No 163
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.18 E-value=2.1e-10 Score=115.36 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=89.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||++++++..| +.....++. .
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f-~~~y~pTi~-d-------------------------------------------- 35 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRF-EEQYTPTIE-D-------------------------------------------- 35 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC-CCCCCCChh-H--------------------------------------------
Confidence 699999999999999999998776 322111000 0
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 195 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~ 195 (609)
+. ...+.+. .....+.||||||.... ..+...|+..+|++|+|++..+.+ +-+....+.
T Consensus 36 ----~~--~k~~~i~-~~~~~l~I~Dt~G~~~~-------------~~~~~~~~~~ad~iIlVfdv~~~~-Sf~~i~~~~ 94 (247)
T cd04143 36 ----FH--RKLYSIR-GEVYQLDILDTSGNHPF-------------PAMRRLSILTGDVFILVFSLDNRE-SFEEVCRLR 94 (247)
T ss_pred ----hE--EEEEEEC-CEEEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEeCCCHH-HHHHHHHHH
Confidence 00 0011121 11246789999996543 345566788999998876544322 111122222
Q ss_pred HHh------------CCCCCceEEEecccCcCCCCC-cHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 196 REV------------DPRGDRTFGVLTKIDLMDKGT-DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 196 ~~~------------d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++ ...+.|+|+|+||+|+..... ...++.+-........|+.+++.++.++++++..+..
T Consensus 95 ~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 95 EQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred HHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 222 223689999999999975322 2222211001112356888888888888877665543
No 164
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.18 E-value=9.1e-11 Score=115.04 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=48.1
Q ss_pred cccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHh
Q 007296 119 AISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV 198 (609)
Q Consensus 119 ~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~ 198 (609)
+++.+.....+. ++...+.||||||..+. ...+..+++.+|++|++++ +..+...+.. .....+
T Consensus 62 g~T~~~~~~~~~-~~~~~~~liDTpG~~~~-------------~~~~~~~~~~ad~~llVvD-~~~~~~~~~~-~~~~~~ 125 (208)
T cd04166 62 GITIDVAYRYFS-TPKRKFIIADTPGHEQY-------------TRNMVTGASTADLAILLVD-ARKGVLEQTR-RHSYIL 125 (208)
T ss_pred CcCeecceeEEe-cCCceEEEEECCcHHHH-------------HHHHHHhhhhCCEEEEEEE-CCCCccHhHH-HHHHHH
Confidence 344444443333 34568999999996432 1224457889999988765 4444332221 122222
Q ss_pred CCCC-CceEEEecccCcCCC
Q 007296 199 DPRG-DRTFGVLTKIDLMDK 217 (609)
Q Consensus 199 d~~~-~rti~VltK~D~~~~ 217 (609)
...+ .++|+|+||+|+.+.
T Consensus 126 ~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 126 SLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred HHcCCCcEEEEEEchhcccC
Confidence 2233 357889999999753
No 165
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.18 E-value=1.1e-10 Score=111.35 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=92.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+.++|||||+.+++...| +....+ |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 699999999999999999998876 332211 1000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l 192 (609)
.+. ..+.+.+ ....+.||||||..+. ..+...|+++++++|||.+-.+.. +.+ ..|.
T Consensus 37 ---~~~---~~~~~~~-~~v~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~ 96 (176)
T cd04133 37 ---NFS---ANVSVDG-NTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLISRASYENVLKKWV 96 (176)
T ss_pred ---eeE---EEEEECC-EEEEEEEEECCCCccc-------------cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHH
Confidence 010 1122222 2357889999997654 445667999999999986543321 222 2355
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCC----------cHHHHHhccccccCC-ceeeEeeCChhhhcccccHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGT----------DAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~----------~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..++...+ +.++|+|.||+|+.+... ...+.........+. +|+.+++.++.++++.+....
T Consensus 97 ~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 97 PELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred HHHHHhCC-CCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHH
Confidence 55555544 689999999999975421 001111111222333 577777777777766655443
No 166
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.18 E-value=2.4e-10 Score=127.43 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|.|+|+|.+++|||||||+|+|..+.....|-.|+-........ +.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~--------------------------------~~ 50 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPM--------------------------------DV 50 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeee--------------------------------cc
Confidence 5799999999999999999999998764333343443211111000 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..+. .....-..++. ...+.++||||||.... ..+...+++.+|+++|++. ++.+...+. .
T Consensus 51 ~~~~---~~~~~~~~~v~-~~~~~l~~iDTpG~e~f-------------~~l~~~~~~~aD~~IlVvD-~~~g~~~qt-~ 111 (590)
T TIGR00491 51 IEGI---CGDLLKKFKIR-LKIPGLLFIDTPGHEAF-------------TNLRKRGGALADLAILIVD-INEGFKPQT-Q 111 (590)
T ss_pred cccc---ccccccccccc-cccCcEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEE-CCcCCCHhH-H
Confidence 0000 00000000111 12346999999996542 4556678899999988764 443333222 2
Q ss_pred HHHHHhCCCCCceEEEecccCcCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
..+..+...+.|+|+|+||+|+.+
T Consensus 112 e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 112 EALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHcCCCEEEEEECCCccc
Confidence 333444445789999999999974
No 167
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.18 E-value=4.3e-10 Score=120.13 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=32.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEE
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLV 73 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~ 73 (609)
.+|++||.+|||||||+|+|++..+...+...||+-|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999998644455668877755
No 168
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.18 E-value=2.2e-10 Score=105.35 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=25.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGS 64 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~ 64 (609)
++|+++|.++||||||+|++++.. +|.+.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 589999999999999999999987 45443
No 169
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.18 E-value=5.5e-11 Score=133.44 Aligned_cols=110 Identities=19% Similarity=0.301 Sum_probs=70.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
.++.+|||||..+.... + .. +.+.+.|+. ++|.++++++..+ .+..+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~~--s--~~---e~v~~~~l~~~~aDvvI~VvDat~----ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTF--S--LE---EEVARDYLLNEKPDLVVNVVDASN----LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCcc--c--hH---HHHHHHHHhhcCCCEEEEEecCCc----chhhHHHHHHHHhcCCCEEEEEehh
Confidence 36889999998765332 1 11 344556654 6888877665443 2234555666666789999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
|+.++.....+. +.....++..++.+++++++|+++..+...+
T Consensus 110 Dl~~~~~i~~d~-~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRIDE-EKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhhH-HHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 997543211111 1112344577889999999999887776654
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.18 E-value=1.9e-10 Score=128.56 Aligned_cols=117 Identities=19% Similarity=0.302 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
...|.|+++|..++|||||+++|.+..+.....+-.| +
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT------~------------------------------------ 122 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGIT------Q------------------------------------ 122 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCcee------e------------------------------------
Confidence 4679999999999999999999998776221111111 1
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.+. ...+..++...++||||||..+. ..+...++..+|++||++ +++.+... ..
T Consensus 123 -------~ig----~~~v~~~~~~~i~~iDTPGhe~F-------------~~~r~rga~~aDiaILVV-da~dgv~~-qT 176 (587)
T TIGR00487 123 -------HIG----AYHVENEDGKMITFLDTPGHEAF-------------TSMRARGAKVTDIVVLVV-AADDGVMP-QT 176 (587)
T ss_pred -------cce----EEEEEECCCcEEEEEECCCCcch-------------hhHHHhhhccCCEEEEEE-ECCCCCCH-hH
Confidence 000 01122222237899999997653 445567788999998876 44433322 22
Q ss_pred HHHHHHhCCCCCceEEEecccCcCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
...++.....+.|+|+++||+|+.+
T Consensus 177 ~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 177 IEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HHHHHHHHHcCCCEEEEEECccccc
Confidence 3344555556789999999999864
No 171
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.17 E-value=1.9e-10 Score=114.69 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
+|+++|.+|||||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999863
No 172
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.17 E-value=3.1e-11 Score=116.36 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=48.0
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecc
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 211 (609)
.....++|+||||..+. ...+...++.+|++|++| ++..+...+. ...++.+...+.|.|+|+||
T Consensus 67 ~~~~~i~~iDtPG~~~f-------------~~~~~~~~~~~D~ailvV-da~~g~~~~~-~~~l~~~~~~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDF-------------IKEMIRGLRQADIAILVV-DANDGIQPQT-EEHLKILRELGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSHHH-------------HHHHHHHHTTSSEEEEEE-ETTTBSTHHH-HHHHHHHHHTT-SEEEEEET
T ss_pred ccccceeecccccccce-------------eecccceecccccceeee-eccccccccc-ccccccccccccceEEeeee
Confidence 45568999999996432 233445588999998865 5555544433 34556666667889999999
Q ss_pred cCcC
Q 007296 212 IDLM 215 (609)
Q Consensus 212 ~D~~ 215 (609)
+|+.
T Consensus 132 ~D~~ 135 (188)
T PF00009_consen 132 MDLI 135 (188)
T ss_dssp CTSS
T ss_pred ccch
Confidence 9998
No 173
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.17 E-value=1e-10 Score=112.78 Aligned_cols=154 Identities=21% Similarity=0.299 Sum_probs=89.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+++||||||++++++..| |... .|+...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~-~~~~-----~~t~~~---------------------------------------- 35 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF-PQVY-----EPTVFE---------------------------------------- 35 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcc-----CCccee----------------------------------------
Confidence 689999999999999999999876 3211 111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l 192 (609)
.+. ..+.+. .....+.||||||.... ..+...|++.++++|+|.+-.+.+ +.+ ..|+
T Consensus 36 ---~~~---~~i~~~-~~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~ 95 (189)
T cd04134 36 ---NYV---HDIFVD-GLHIELSLWDTAGQEEF-------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWL 95 (189)
T ss_pred ---eeE---EEEEEC-CEEEEEEEEECCCChhc-------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000 011111 12247889999997543 334556889999999876543322 221 1244
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHH----------Hhcc--ccccC-CceeeEeeCChhhhcccccHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDI----------LEGK--SYKLR-YPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~----------l~~~--~~~l~-~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
..++...+ +.|+++|.||+|+.+........ -++. ....+ ..|+.+++.++.++++.+..+..
T Consensus 96 ~~i~~~~~-~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~ 171 (189)
T cd04134 96 GEIREHCP-GVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAAR 171 (189)
T ss_pred HHHHHhCC-CCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHH
Confidence 44444433 68999999999997543210000 0000 11112 45777888777777776655543
No 174
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.17 E-value=1.6e-10 Score=111.69 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=56.6
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH--HHHHHHHhCCCCCceEEEecc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD--AIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~--~l~l~~~~d~~~~rti~VltK 211 (609)
...+++|||||.... +.. ....+..+|+++++++. ......+. .+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~~------------~~~-~~~~~~~~d~vi~VvD~-~~~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHASL------------IRT-IIGGAQIIDLMLLVVDA-TKGIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHHH------------HHH-HHHHHhhCCEEEEEEEC-CCCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 457899999996321 122 22445668888887654 33332222 2222222 36799999999
Q ss_pred cCcCCCCC--cHHHHHhcc----c---cccCCceeeEeeCChhhhcccccHHH
Q 007296 212 IDLMDKGT--DAVDILEGK----S---YKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 212 ~D~~~~~~--~~~~~l~~~----~---~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+|+..... ...+.+... . ......++.+++.++.+++++...+.
T Consensus 130 ~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~ 182 (192)
T cd01889 130 IDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLN 182 (192)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHH
Confidence 99975432 111111110 0 01234566677777666665554443
No 175
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.16 E-value=1.6e-10 Score=109.92 Aligned_cols=115 Identities=23% Similarity=0.271 Sum_probs=72.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|+.+||||||+.++++..| +... .|+...
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAF-PGEY-----IPTVFD---------------------------------------- 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCcC-----CCccee----------------------------------------
Confidence 689999999999999999998765 3221 111000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l 192 (609)
.....+.+. .....+.||||||.... ..+...|++++|++|++++..+.+ +.. ..|+
T Consensus 37 ------~~~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~ 96 (174)
T cd01871 37 ------NYSANVMVD-GKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWY 96 (174)
T ss_pred ------eeEEEEEEC-CEEEEEEEEECCCchhh-------------hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 000111121 12246789999996543 445667899999999987654432 111 1244
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...+...+ ..|+++|.||+|+.+.
T Consensus 97 ~~~~~~~~-~~piilvgnK~Dl~~~ 120 (174)
T cd01871 97 PEVRHHCP-NTPIILVGTKLDLRDD 120 (174)
T ss_pred HHHHHhCC-CCCEEEEeeChhhccC
Confidence 44444433 5899999999999653
No 176
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.16 E-value=1.2e-10 Score=108.93 Aligned_cols=154 Identities=19% Similarity=0.302 Sum_probs=96.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|||+.+||||||++++.+..| |..... |-
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~-t~---------------------------------------------- 32 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIP-TI---------------------------------------------- 32 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSET-TS----------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccc-cc----------------------------------------------
Confidence 589999999999999999999875 332211 11
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~l~ 193 (609)
++......+.+. .....+.+||+||..+. ..+...++++++++|++....+.. .....|+.
T Consensus 33 ---~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~ 95 (162)
T PF00071_consen 33 ---GIDSYSKEVSID-GKPVNLEIWDTSGQERF-------------DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLE 95 (162)
T ss_dssp ---SEEEEEEEEEET-TEEEEEEEEEETTSGGG-------------HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHH
T ss_pred ---cccccccccccc-ccccccccccccccccc-------------cccccccccccccccccccccccccccccccccc
Confidence 000001111111 22346889999996543 455677899999998876543321 11235666
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
......+...++++|.||.|+.+...-..+..+......+.+|+.++...+.++.+.+...
T Consensus 96 ~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 96 EIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQEL 156 (162)
T ss_dssp HHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHH
T ss_pred cccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHH
Confidence 6666777668999999999998633211111111223445889999888887776655433
No 177
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.15 E-value=2.1e-10 Score=109.96 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=75.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|++||+.++|||||++++.+..| +.... .|-..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------------------------------------ 40 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------------------------------------ 40 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee------------------------------------------
Confidence 45799999999999999999998876 32211 11000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~ 190 (609)
.+ ...+.+ ......+.||||+|..+. ..+...|+++++++|||.+..+.+ +.+ ..
T Consensus 41 -----~~---~~~~~~-~~~~~~l~iwDtaG~e~~-------------~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~ 98 (182)
T cd04172 41 -----NY---TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLKK 98 (182)
T ss_pred -----ee---EEEEEE-CCEEEEEEEEECCCchhh-------------HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 011112 122347889999996442 456678999999999887644321 111 34
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
|...++...+ ..+.|+|.||+|+.+
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 5555555555 589999999999864
No 178
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.14 E-value=1.9e-10 Score=109.95 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=73.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|+.++|||||++++.+..| |... .||...
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~---------------------------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVFE---------------------------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceEE----------------------------------------
Confidence 699999999999999999999876 4322 121100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc--chHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA--TSDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~--~~~~l 192 (609)
.++ ..+.+.+ ....+.+|||||.... ..+...|+++++++|+|.+..+.+ +. ...|.
T Consensus 37 ---~~~---~~~~~~~-~~~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~ 96 (178)
T cd04131 37 ---NYT---ASFEIDE-QRIELSLWDTSGSPYY-------------DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWR 96 (178)
T ss_pred ---EEE---EEEEECC-EEEEEEEEECCCchhh-------------hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHH
Confidence 000 1112222 2357889999996543 345567899999998877543322 11 13455
Q ss_pred HHHHHhCCCCCceEEEecccCcCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
..++...+ ..++|+|.||+|+.+
T Consensus 97 ~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 97 GEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHCC-CCCEEEEEEChhhhc
Confidence 55555555 589999999999864
No 179
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.14 E-value=1.5e-10 Score=109.91 Aligned_cols=115 Identities=19% Similarity=0.257 Sum_probs=69.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|++++|||||+.++.+..| +.. ..|+...
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~-~~~-----~~~t~~~---------------------------------------- 35 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGY-PTE-----YVPTAFD---------------------------------------- 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCC-----CCCceee----------------------------------------
Confidence 689999999999999999988765 221 1111100
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l 192 (609)
.....+.+.+ ....+.+|||||..+. ..+...|++++|++|++++..+.. +.. ..|+
T Consensus 36 ------~~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~ 95 (173)
T cd04130 36 ------NFSVVVLVDG-KPVRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWI 95 (173)
T ss_pred ------eeeEEEEECC-EEEEEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHH
Confidence 0001111221 2246789999997543 233455889999998877544322 111 2234
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...+... .+.|+++|.||+|+.+.
T Consensus 96 ~~~~~~~-~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 96 PEIRKHN-PKAPIILVGTQADLRTD 119 (173)
T ss_pred HHHHhhC-CCCCEEEEeeChhhccC
Confidence 3333332 35899999999998653
No 180
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.14 E-value=1.5e-10 Score=112.70 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=71.6
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHHHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..+.||||||..+. ..+...|+++++++|+|++..+.. + ....|...++... .+.|+++|.||+
T Consensus 44 ~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~ 109 (200)
T smart00176 44 IRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 109 (200)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECc
Confidence 57889999997553 567788999999998876544321 1 1123444444444 368999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHH
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
|+.+..... +.+. .....+..|+.+++.++.++++.+..+.....
T Consensus 110 Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 110 DVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred ccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 986433211 1111 11233567899999999998888877765443
No 181
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.14 E-value=1.7e-10 Score=109.22 Aligned_cols=115 Identities=21% Similarity=0.242 Sum_probs=68.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|.+++|||||++++.+..| +.... |+...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~-~~~~~-----~t~~~---------------------------------------- 35 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF-PEEYV-----PTVFD---------------------------------------- 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCC-----Cceee----------------------------------------
Confidence 689999999999999999998876 22211 11000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-c--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-T--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-~--~~~l 192 (609)
.....+.+.+ ....+.+|||||.... ..+...++++++++|+++...+..-. . ..+.
T Consensus 36 ------~~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~ 95 (174)
T cd04135 36 ------HYAVSVTVGG-KQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWV 95 (174)
T ss_pred ------eeEEEEEECC-EEEEEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 0000111111 1235789999996553 22334567889999887654332111 1 1233
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...+.. ..+.|.++|.||+|+.+.
T Consensus 96 ~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 96 PELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred HHHHhh-CCCCCEEEEeEchhhhcC
Confidence 344444 456899999999998654
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.14 E-value=2.1e-10 Score=130.08 Aligned_cols=121 Identities=17% Similarity=0.306 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
...|.|+|+|..++|||||+++|.+..+.....+-.|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiT------------------------------------------- 278 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGIT------------------------------------------- 278 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccc-------------------------------------------
Confidence 4689999999999999999999998765111111111
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
..+....+.+.. ......++||||||... +..+...++..+|++|||| ++..+...+ .
T Consensus 279 ------q~i~~~~v~~~~-~~~~~kItfiDTPGhe~-------------F~~mr~rg~~~aDiaILVV-DA~dGv~~Q-T 336 (742)
T CHL00189 279 ------QKIGAYEVEFEY-KDENQKIVFLDTPGHEA-------------FSSMRSRGANVTDIAILII-AADDGVKPQ-T 336 (742)
T ss_pred ------cccceEEEEEEe-cCCceEEEEEECCcHHH-------------HHHHHHHHHHHCCEEEEEE-ECcCCCChh-h
Confidence 001001111111 11235799999999643 2566778899999998877 444433322 2
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...++.+...+.|+|+|+||+|+.+.
T Consensus 337 ~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 337 IEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred HHHHHHHHhcCceEEEEEECCCcccc
Confidence 23444555667899999999999753
No 183
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.13 E-value=7.8e-11 Score=117.26 Aligned_cols=157 Identities=18% Similarity=0.283 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.++.|.+||-||||||||||||+..+---.....+|-.|.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~---------------------------------------- 234 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPH---------------------------------------- 234 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccc----------------------------------------
Confidence 4678899999999999999999987631122334444441
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~ 190 (609)
.| .+...+..++++-|+||+++.+..+ .-+... -.+.|+.++.+++|| +.+.. ....+
T Consensus 235 -iG------------~v~yddf~q~tVADiPGiI~GAh~n--kGlG~~----FLrHiER~~~l~fVv-D~s~~~~~~p~~ 294 (366)
T KOG1489|consen 235 -IG------------TVNYDDFSQITVADIPGIIEGAHMN--KGLGYK----FLRHIERCKGLLFVV-DLSGKQLRNPWQ 294 (366)
T ss_pred -cc------------eeeccccceeEeccCcccccccccc--CcccHH----HHHHHHhhceEEEEE-ECCCcccCCHHH
Confidence 01 0334445569999999999977653 112211 234466788776655 44433 11112
Q ss_pred HHH-HHHHhCC-----CCCceEEEecccCcCCCCCcHHHHHhccccccCCc-eeeEeeCChhhhccccc
Q 007296 191 AIK-ISREVDP-----RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP-WIGVVNRSQADINKSVD 252 (609)
Q Consensus 191 ~l~-l~~~~d~-----~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~ 252 (609)
.++ +..++.. ..++.++|+||+|+.+...+. +......++.+ .++|++.+++++..++.
T Consensus 295 ~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 295 QLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred HHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEEEeeeccccchHHHHH
Confidence 222 3333332 236799999999997443332 22222344444 67778888877665443
No 184
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.13 E-value=3e-10 Score=107.72 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=68.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|+++||||||++++.+..| |... .|+...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~-----~~t~~~--------------------------------------- 36 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVY-----VPTVFE--------------------------------------- 36 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCcccc---------------------------------------
Confidence 5799999999999999999999875 3221 110000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 191 (609)
.....+.+.+ ....+.+|||||.... ..+...++.++|+++++.+..+.+ +.. ..+
T Consensus 37 -------~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~ 95 (175)
T cd01870 37 -------NYVADIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 95 (175)
T ss_pred -------ceEEEEEECC-EEEEEEEEeCCCchhh-------------hhccccccCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0000111211 2236789999997542 223345678899988765433221 111 123
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...++... .+.|+++|.||+|+.+.
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 96 TPEVKHFC-PNVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHhhC-CCCCEEEEeeChhcccC
Confidence 33333333 36899999999998754
No 185
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.12 E-value=2.8e-10 Score=103.36 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=61.1
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH----HHHHHhCCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI----KISREVDPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l----~l~~~~d~~~~rti~Vl 209 (609)
...+++||+||.... ......+++.++++++++.. +.+....... .........+.++++|+
T Consensus 44 ~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 44 KVKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYDV-TDRESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred EEEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEEC-cCHHHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 357899999997653 22336788899998887644 3332222221 13334455679999999
Q ss_pred cccCcCCCCCcHHHH-HhccccccCCceeeEeeCChhhhccc
Q 007296 210 TKIDLMDKGTDAVDI-LEGKSYKLRYPWIGVVNRSQADINKS 250 (609)
Q Consensus 210 tK~D~~~~~~~~~~~-l~~~~~~l~~g~~~v~~~s~~~i~~~ 250 (609)
||+|+.+........ ..........+++.+++..+.++.+.
T Consensus 110 nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 110 NKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEEL 151 (157)
T ss_pred eccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHH
Confidence 999998654322211 11112223456777777666655443
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.12 E-value=3.3e-10 Score=129.58 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=75.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
...|.|+|+|..++|||||+++|.+..+. .+. .+.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e-----~~G--------------------------------------- 322 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGE-----AGG--------------------------------------- 322 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccc-----cCc---------------------------------------
Confidence 46899999999999999999999887651 110 110
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
++.+.-...+... ...++||||||...+ ..+...++..+|++|||+ ++..+... ..
T Consensus 323 --------IT~~iga~~v~~~-~~~ItfiDTPGhe~F-------------~~m~~rga~~aDiaILVV-dAddGv~~-qT 378 (787)
T PRK05306 323 --------ITQHIGAYQVETN-GGKITFLDTPGHEAF-------------TAMRARGAQVTDIVVLVV-AADDGVMP-QT 378 (787)
T ss_pred --------eeeeccEEEEEEC-CEEEEEEECCCCccc-------------hhHHHhhhhhCCEEEEEE-ECCCCCCH-hH
Confidence 0000000112111 246899999997653 445667888999998876 44443322 22
Q ss_pred HHHHHHhCCCCCceEEEecccCcCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
...++.+...+.|+|+|+||+|+.+
T Consensus 379 ~e~i~~a~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 379 IEAINHAKAAGVPIIVAINKIDKPG 403 (787)
T ss_pred HHHHHHHHhcCCcEEEEEECccccc
Confidence 3344555566789999999999964
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.12 E-value=2.1e-10 Score=128.61 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=66.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecccC
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLTKID 213 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D 213 (609)
..++||||||..+. ......++.++|++|++|+ ++.+...+.. +.+..+...+.+ .|+|+||+|
T Consensus 50 ~~v~~iDtPGhe~f-------------~~~~~~g~~~aD~aILVVD-a~~G~~~qT~-ehl~il~~lgi~~iIVVlNK~D 114 (581)
T TIGR00475 50 YRLGFIDVPGHEKF-------------ISNAIAGGGGIDAALLVVD-ADEGVMTQTG-EHLAVLDLLGIPHTIVVITKAD 114 (581)
T ss_pred EEEEEEECCCHHHH-------------HHHHHhhhccCCEEEEEEE-CCCCCcHHHH-HHHHHHHHcCCCeEEEEEECCC
Confidence 57899999995332 3344567789999988664 4444322221 222223334667 999999999
Q ss_pred cCCCCC------cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 214 LMDKGT------DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 214 ~~~~~~------~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
+.+... +..+++.+....-...++.+++.++.|++++...+....
T Consensus 115 lv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 115 RVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 986432 112222211111135678888888888887776665444
No 188
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.12 E-value=4.2e-10 Score=108.81 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=92.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+++|+.+||||||+.+++...| |... .||.-.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~~--------------------------------------- 38 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTVFD--------------------------------------- 38 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCceEe---------------------------------------
Confidence 4799999999999999999998775 3221 121100
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 191 (609)
.+ ...+.+ ......+.+|||||..+. +.+...|++++|++|+|.+..+.+ +.+ ..|
T Consensus 39 ----~~---~~~~~~-~~~~~~l~i~Dt~G~e~~-------------~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w 97 (191)
T cd01875 39 ----NY---SAQTAV-DGRTVSLNLWDTAGQEEY-------------DRLRTLSYPQTNVFIICFSIASPSSYENVRHKW 97 (191)
T ss_pred ----ee---EEEEEE-CCEEEEEEEEECCCchhh-------------hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 001112 122357889999997553 567778999999999876544332 111 123
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHH------------hccccccC-CceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDIL------------EGKSYKLR-YPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l------------~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
...++...+ +.|+++|.||.|+.+.......+. +......+ .+|+.+++.++.++++.+..+..
T Consensus 98 ~~~i~~~~~-~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 98 HPEVCHHCP-NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred HHHHHhhCC-CCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 333333333 689999999999965422111110 00011233 46777887777777776655543
No 189
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.11 E-value=1.7e-10 Score=111.82 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=47.3
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEec
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLT 210 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 210 (609)
.+...++|+||||..+. ..-+...+..+|+++++| ++..+...++ ...++.+...+.+ .|+|+|
T Consensus 62 ~~~~~i~~iDtPG~~~~-------------~~~~~~~~~~~D~~ilVv-da~~g~~~~~-~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 62 TANRHYAHVDCPGHADY-------------IKNMITGAAQMDGAILVV-SATDGPMPQT-REHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CCCeEEEEEECcCHHHH-------------HHHHHHHhhhCCEEEEEE-ECCCCCcHHH-HHHHHHHHHcCCCcEEEEEe
Confidence 34567899999997532 222345577899998865 4555554443 2355556666776 789999
Q ss_pred ccCcCCC
Q 007296 211 KIDLMDK 217 (609)
Q Consensus 211 K~D~~~~ 217 (609)
|+|++++
T Consensus 127 K~D~~~~ 133 (195)
T cd01884 127 KADMVDD 133 (195)
T ss_pred CCCCCCc
Confidence 9999753
No 190
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.10 E-value=7.6e-10 Score=114.79 Aligned_cols=110 Identities=21% Similarity=0.199 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcCC
Q 007296 37 IAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGR 116 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~ 116 (609)
|++||.+|||||||+|+|++..+-+.....||+-|+.-....... .|..++ +.....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~---------~~~~r~--------------~~~~~~ 57 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVE---------CPCKEL--------------GVSCNP 57 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecC---------CCchhh--------------hhhhcc
Confidence 689999999999999999999864444456777775433211000 000000 000000
Q ss_pred CCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecC
Q 007296 117 SKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPA 182 (609)
Q Consensus 117 ~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a 182 (609)
..+.+ +.+....++.+|||||+...+.. ...+.+....+++++|++++||...
T Consensus 58 ~~~~~-------~~~~~~v~i~l~D~aGlv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 58 RYGKC-------IDGKRYVPVELIDVAGLVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred ccccc-------ccCcCcceEEEEECCCCCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00000 11223346899999999864432 1223344566799999999887653
No 191
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.10 E-value=3.5e-10 Score=118.12 Aligned_cols=133 Identities=28% Similarity=0.409 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCc-----CcccccccccccEEEEEE
Q 007296 3 NLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDF-----LPRGSGIVTRRPLVLQLH 77 (609)
Q Consensus 3 ~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~-----lP~~~~~~Tr~p~~~~l~ 77 (609)
+|-..++++++++..+... --.|+|+|.+|+|||||||||-|..- -|+|..-+|..|
T Consensus 16 ~~~~~~s~i~~~l~~~~~~------------~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~------ 77 (376)
T PF05049_consen 16 NLQEVVSKIREALKDIDNA------------PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP------ 77 (376)
T ss_dssp -HHHHHHHHHHHHHHHHH--------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-------
T ss_pred CHHHHHHHHHHHHHHhhcC------------ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC------
Confidence 4567788888888777642 33899999999999999999988531 111111111111
Q ss_pred ecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccch
Q 007296 78 KIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESI 157 (609)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~ 157 (609)
-...+|+.|+++|||+||+...... .
T Consensus 78 -------------------------------------------------~~Y~~p~~pnv~lWDlPG~gt~~f~-----~ 103 (376)
T PF05049_consen 78 -------------------------------------------------TPYPHPKFPNVTLWDLPGIGTPNFP-----P 103 (376)
T ss_dssp -------------------------------------------------EEEE-SS-TTEEEEEE--GGGSS-------H
T ss_pred -------------------------------------------------eeCCCCCCCCCeEEeCCCCCCCCCC-----H
Confidence 1145788999999999998653211 1
Q ss_pred HHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 158 VQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 158 ~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.+..+.+ -+..-|.+|++ .+ ..+...++ .+++.+...|+++.+|-||+|.
T Consensus 104 ~~Yl~~~---~~~~yD~fiii-~s--~rf~~ndv-~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 104 EEYLKEV---KFYRYDFFIII-SS--ERFTENDV-QLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp HHHHHHT---TGGG-SEEEEE-ES--SS--HHHH-HHHHHHHHTT-EEEEEE--HHH
T ss_pred HHHHHHc---cccccCEEEEE-eC--CCCchhhH-HHHHHHHHcCCcEEEEEecccc
Confidence 1111111 13356776653 33 23444444 5899999999999999999996
No 192
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.08 E-value=1.4e-09 Score=105.89 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=47.9
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHHHHHHHHh--------------
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAIKISREV-------------- 198 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~l~l~~~~-------------- 198 (609)
..+.||||+|..+. ..+...|+++++++|+|.+-.+.+ -....|+..+...
T Consensus 54 ~~l~IwDtaG~e~~-------------~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 54 FFVELWDVGGSESV-------------KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEEecCCchhH-------------HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 35789999997543 667788999999999987554432 1123454444332
Q ss_pred -----CCCCCceEEEecccCcCCC
Q 007296 199 -----DPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 199 -----d~~~~rti~VltK~D~~~~ 217 (609)
.+...|+|+|.||+|+.++
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccCCCCceEEEEEECccchhh
Confidence 1235799999999999765
No 193
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.07 E-value=1.2e-09 Score=111.54 Aligned_cols=136 Identities=21% Similarity=0.323 Sum_probs=76.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccc-cccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT-RRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T-r~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.|+|||..|+|||||+|+|++..+.+.+..... ..+
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~------------------------------------------- 42 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEH------------------------------------------- 42 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccc-------------------------------------------
Confidence 799999999999999999999987544321110 000
Q ss_pred CCCCcccCCceEEEEecCC-CCCcEEEeCCCCccccCC-CCccchHHHHHHHHHHh------------hc--CCceEEEE
Q 007296 115 GRSKAISTVPIHLSIFSPN-VVNLTLIDLPGLTKVAVD-GQPESIVQDIENMVRSY------------IE--KPNCIILA 178 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~v~~y------------i~--~~~~iIL~ 178 (609)
...+.+-......+...+ ...+++|||||+...... ..-+.+.+.+.+.-..| +. +.++++++
T Consensus 43 -~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~ 121 (276)
T cd01850 43 -IDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYF 121 (276)
T ss_pred -cCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEE
Confidence 000000011111122111 236999999998764321 11122222222222222 22 25566666
Q ss_pred EecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 179 ISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 179 v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
+.+...++...+ +++++.+.. +.++|.|+||+|++.+
T Consensus 122 i~~~~~~l~~~D-~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 122 IEPTGHGLKPLD-IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred EeCCCCCCCHHH-HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 666554554444 457777764 7899999999999764
No 194
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.5e-09 Score=112.47 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=106.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.--.|++-|+.|+||||++||++-.++||.|.|.||.|-.++- -+++...+....+ ...-.|...+...+......
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Ve--gadG~e~vl~~~~--s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVE--GADGAEAVLATEG--SEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeec--ccCCcceeeccCC--CcccccHHHHhHHHHhcCcc
Confidence 3568999999999999999999999999999999999997776 1111122211111 11122333333222211111
Q ss_pred hcCCCCcccCCceEEEEecCCC------CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc
Q 007296 113 ETGRSKAISTVPIHLSIFSPNV------VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL 186 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~------~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~ 186 (609)
. . ....--+.|+.|+. .++.++|.||+.-.+.. ...+.++..++|.+|+|+ .+...+
T Consensus 184 ~-----~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~----------tswid~~cldaDVfVlV~-NaEntl 246 (749)
T KOG0448|consen 184 K-----D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL----------TSWIDSFCLDADVFVLVV-NAENTL 246 (749)
T ss_pred c-----c-cCcceEEEEEecCccchhhhccceeccCCCCCCchhh----------hHHHHHHhhcCCeEEEEe-cCccHh
Confidence 0 0 11223355666654 38999999999764332 667888999999998866 444444
Q ss_pred cchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHH
Q 007296 187 ATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVD 223 (609)
Q Consensus 187 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~ 223 (609)
+.+ +.++...+......++++.||+|......++.+
T Consensus 247 t~s-ek~Ff~~vs~~KpniFIlnnkwDasase~ec~e 282 (749)
T KOG0448|consen 247 TLS-EKQFFHKVSEEKPNIFILNNKWDASASEPECKE 282 (749)
T ss_pred HHH-HHHHHHHhhccCCcEEEEechhhhhcccHHHHH
Confidence 333 345777776664556666789999866555433
No 195
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.06 E-value=6.6e-10 Score=113.02 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=49.5
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ...+..+++.+|++|++| ++..+...+. ..+++.+...+.|.++++||+|
T Consensus 63 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVV-Da~~g~~~~t-~~~~~~~~~~~~p~ivviNK~D 127 (270)
T cd01886 63 DHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVF-DAVAGVEPQT-ETVWRQADRYNVPRIAFVNKMD 127 (270)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHHcCEEEEEE-ECCCCCCHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 457899999997642 234678899999998866 4544444333 3456666667889999999999
Q ss_pred cCC
Q 007296 214 LMD 216 (609)
Q Consensus 214 ~~~ 216 (609)
+..
T Consensus 128 ~~~ 130 (270)
T cd01886 128 RTG 130 (270)
T ss_pred CCC
Confidence 875
No 196
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.05 E-value=1.2e-09 Score=106.75 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=59.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..++||||||... +...+...+..+|+++++++........ .+.+..+... ...++|+|+||+
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEch
Confidence 4789999999422 2333455667789998876554322222 2233333222 124689999999
Q ss_pred CcCCCCC--cHHHHHhcccc---ccCCceeeEeeCChhhhcccccHHHH
Q 007296 213 DLMDKGT--DAVDILEGKSY---KLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 213 D~~~~~~--~~~~~l~~~~~---~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
|+.+... ...+.++.... .....++.+++.++.+++++++.+..
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 9975321 11111111111 12345677788877877776655543
No 197
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.04 E-value=1.2e-09 Score=107.77 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=72.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|||++++|||||++++++..| |.... .|-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~-pTi~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYV-PTVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccC-Ccccc--------------------------------------------
Confidence 689999999999999999999876 43221 11000
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-cc--hHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-AT--SDAI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~~--~~~l 192 (609)
.+ ...+.+. .....|.||||||.... ..+...|++++|++|+|++..+.+- .. ..|.
T Consensus 37 ---~~---~~~~~~~-~~~v~L~iwDt~G~e~~-------------~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~ 96 (222)
T cd04173 37 ---NY---TASFEID-KRRIELNMWDTSGSSYY-------------DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQ 96 (222)
T ss_pred ---ce---EEEEEEC-CEEEEEEEEeCCCcHHH-------------HHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 00 0112221 22357889999996542 4556678999999998876544321 11 1233
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...+...+ +.|+|+|.||+|+.+.
T Consensus 97 ~~~~~~~~-~~piiLVgnK~DL~~~ 120 (222)
T cd04173 97 GETQEFCP-NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHhhCC-CCCEEEEEECcccccc
Confidence 33334333 5899999999999653
No 198
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.04 E-value=1.9e-09 Score=105.27 Aligned_cols=117 Identities=18% Similarity=0.277 Sum_probs=72.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
|.|+++|+++||||||++.|.+..+.+.-. |-.|....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~---s~~~~~~~--------------------------------------- 38 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVT---SIEPNVAT--------------------------------------- 38 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccC---cEeecceE---------------------------------------
Confidence 789999999999999999999886521110 10110000
Q ss_pred CCCCcccCCceEEEEec-CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCC-ceEEEEEecCCCcccchHHH
Q 007296 115 GRSKAISTVPIHLSIFS-PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKP-NCIILAISPANQDLATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~-~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~-~~iIL~v~~a~~d~~~~~~l 192 (609)
..... .....+.+|||||..+. +.+...|++.+ +++|++++.....-...++.
T Consensus 39 ------------~~~~~~~~~~~~~l~D~pG~~~~-------------~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~ 93 (203)
T cd04105 39 ------------FILNSEGKGKKFRLVDVPGHPKL-------------RDKLLETLKNSAKGIVFVVDSATFQKNLKDVA 93 (203)
T ss_pred ------------EEeecCCCCceEEEEECCCCHHH-------------HHHHHHHHhccCCEEEEEEECccchhHHHHHH
Confidence 00000 12346889999997652 55667888888 99998877655311111111
Q ss_pred H----HHH--HhCCCCCceEEEecccCcCCCC
Q 007296 193 K----ISR--EVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 193 ~----l~~--~~d~~~~rti~VltK~D~~~~~ 218 (609)
. +.. .....+.|+++|.||.|+....
T Consensus 94 ~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 94 EFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 1 111 1223578999999999987543
No 199
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.04 E-value=1.3e-09 Score=108.88 Aligned_cols=68 Identities=22% Similarity=0.188 Sum_probs=48.4
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ...+..+++.+|++|+++.. ..+...+ ...+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVvd~-~~g~~~~-~~~~~~~~~~~~~P~iivvNK~D 127 (237)
T cd04168 63 DTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVISA-VEGVQAQ-TRILWRLLRKLNIPTIIFVNKID 127 (237)
T ss_pred CEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEEeC-CCCCCHH-HHHHHHHHHHcCCCEEEEEECcc
Confidence 457999999998653 34467788999999887654 4444332 22344555556889999999999
Q ss_pred cCC
Q 007296 214 LMD 216 (609)
Q Consensus 214 ~~~ 216 (609)
+..
T Consensus 128 ~~~ 130 (237)
T cd04168 128 RAG 130 (237)
T ss_pred ccC
Confidence 874
No 200
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.03 E-value=1.4e-09 Score=122.23 Aligned_cols=168 Identities=18% Similarity=0.263 Sum_probs=93.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+..|++||+.++|||||+++|+... |..++... +..+.|..+. ++.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~--------------------~~~~~D~~~~--------Ere 48 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM--------------------REQVLDSMDL--------ERE 48 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc--------------------cccccCCChH--------HHh
Confidence 5679999999999999999998743 22222110 0001111110 111
Q ss_pred cCCCCcccCCceEEEEe--cCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 114 TGRSKAISTVPIHLSIF--SPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~--~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.+.++....+.+... +.....+.||||||..+. ...+..|++.+|++||++ +++.+...+..
T Consensus 49 --rGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-------------~~~v~~~l~~aD~aILVv-Dat~g~~~qt~ 112 (595)
T TIGR01393 49 --RGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLV-DAAQGIEAQTL 112 (595)
T ss_pred --cCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEe-cCCCCCCHhHH
Confidence 123333444444433 222357899999998763 455778999999998866 45444433332
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCc-HHHHHhccccccCC---ceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTD-AVDILEGKSYKLRY---PWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..+.. ....+.++|+|+||+|+.+...+ ..+.+. ..++. .++.+++.++.+++++++.+.
T Consensus 113 ~~~~~-~~~~~ipiIiViNKiDl~~~~~~~~~~el~---~~lg~~~~~vi~vSAktG~GI~~Lle~I~ 176 (595)
T TIGR01393 113 ANVYL-ALENDLEIIPVINKIDLPSADPERVKKEIE---EVIGLDASEAILASAKTGIGIEEILEAIV 176 (595)
T ss_pred HHHHH-HHHcCCCEEEEEECcCCCccCHHHHHHHHH---HHhCCCcceEEEeeccCCCCHHHHHHHHH
Confidence 21211 22246789999999998643211 111111 11222 256667777777766655444
No 201
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.03 E-value=1.1e-09 Score=106.26 Aligned_cols=66 Identities=24% Similarity=0.148 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK 211 (609)
..|.||||||.... +...|+++++++|+|.+..+.. +.+ ..|...++...+ +.|+|+|.||
T Consensus 66 v~l~iwDTaG~~~~---------------~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgNK 129 (195)
T cd01873 66 VSLRLWDTFGDHDK---------------DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGCK 129 (195)
T ss_pred EEEEEEeCCCChhh---------------hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 47889999997531 2235889999999876544332 111 124444444443 5799999999
Q ss_pred cCcCC
Q 007296 212 IDLMD 216 (609)
Q Consensus 212 ~D~~~ 216 (609)
+|+.+
T Consensus 130 ~DL~~ 134 (195)
T cd01873 130 LDLRY 134 (195)
T ss_pred hhccc
Confidence 99864
No 202
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.02 E-value=9.4e-10 Score=123.88 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEec
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLT 210 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 210 (609)
++...++||||||..+ .+.+ +...+..+|+++||| +++.++..+.. ..+..+...+.+ .|+|+|
T Consensus 48 ~~g~~i~~IDtPGhe~------------fi~~-m~~g~~~~D~~lLVV-da~eg~~~qT~-ehl~il~~lgi~~iIVVlN 112 (614)
T PRK10512 48 PDGRVLGFIDVPGHEK------------FLSN-MLAGVGGIDHALLVV-ACDDGVMAQTR-EHLAILQLTGNPMLTVALT 112 (614)
T ss_pred CCCcEEEEEECCCHHH------------HHHH-HHHHhhcCCEEEEEE-ECCCCCcHHHH-HHHHHHHHcCCCeEEEEEE
Confidence 3444689999999643 2233 345678899998866 55555444332 222333334455 579999
Q ss_pred ccCcCCCCC--cHHHHHhccc--ccc-CCceeeEeeCChhhhcccccHHHHHH
Q 007296 211 KIDLMDKGT--DAVDILEGKS--YKL-RYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 211 K~D~~~~~~--~~~~~l~~~~--~~l-~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
|+|+.++.. ...+.+.... ..+ ...++.|++.++.+++.++..+....
T Consensus 113 KiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 113 KADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 999986431 1111111111 111 24578888888888888777666543
No 203
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.02 E-value=7.6e-10 Score=116.02 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCc
Q 007296 5 ITLVNKIQRACTALGDHG-EESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGK 83 (609)
Q Consensus 5 ~~~~~~lq~~~~~~~~~~-~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~ 83 (609)
..++.+.+..+..|-... .-+++|+...+.+++.|||.||+||||++|-++..+. -+..+|.
T Consensus 138 ~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv------evqpYaF----------- 200 (620)
T KOG1490|consen 138 ATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD------EVQPYAF----------- 200 (620)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc------ccCCccc-----------
Confidence 344445554444443211 2257888888899999999999999999999887664 2222332
Q ss_pred cchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHH
Q 007296 84 EYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIEN 163 (609)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~ 163 (609)
+...+.+.-.......+.++|||||.+.+. +....|+.
T Consensus 201 -------------------------------------TTksL~vGH~dykYlrwQViDTPGILD~pl-----EdrN~IEm 238 (620)
T KOG1490|consen 201 -------------------------------------TTKLLLVGHLDYKYLRWQVIDTPGILDRPE-----EDRNIIEM 238 (620)
T ss_pred -------------------------------------ccchhhhhhhhhheeeeeecCCccccCcch-----hhhhHHHH
Confidence 222222233444566889999999987543 34445555
Q ss_pred HHHHhhcCCceEEEEEecCC--CcccchHHHHHHHHhCCC--CCceEEEecccCcCCCC
Q 007296 164 MVRSYIEKPNCIILAISPAN--QDLATSDAIKISREVDPR--GDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 164 ~v~~yi~~~~~iIL~v~~a~--~d~~~~~~l~l~~~~d~~--~~rti~VltK~D~~~~~ 218 (609)
.+...+.+-.+.+|.+.+-+ .+.+..+-.++...+.|. .+++|+|+||+|.+...
T Consensus 239 qsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 239 QIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred HHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 55566666555666666543 344445555677777764 68899999999998654
No 204
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=109.31 Aligned_cols=88 Identities=25% Similarity=0.332 Sum_probs=60.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
--++++||.||+||||||++|+|.+--+.+...+|.-| +
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~-----------------------------------------V 101 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP-----------------------------------------V 101 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc-----------------------------------------c
Confidence 56999999999999999999999875333333444322 1
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
.| +...+...++++|+||++..+..|-. -. ..+..-++.+|.||+|++.
T Consensus 102 PG-------------~l~Y~ga~IQild~Pgii~gas~g~g--rG----~~vlsv~R~ADlIiiVld~ 150 (365)
T COG1163 102 PG-------------MLEYKGAQIQLLDLPGIIEGASSGRG--RG----RQVLSVARNADLIIIVLDV 150 (365)
T ss_pred cc-------------eEeecCceEEEEcCcccccCcccCCC--Cc----ceeeeeeccCCEEEEEEec
Confidence 22 33445678999999999987655321 01 2245667899999886543
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.99 E-value=2.5e-09 Score=105.53 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=49.5
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ...+..+++.+|++|++++ +..+...+ ...+++.....+.|.|+|+||+|
T Consensus 72 ~~~i~iiDTPG~~~f-------------~~~~~~~l~~aD~~ilVvD-~~~g~~~~-t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDF-------------SSEVTAALRLCDGALVVVD-AVEGVCVQ-TETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCcccc-------------HHHHHHHHHhcCeeEEEEE-CCCCCCHH-HHHHHHHHHHcCCCEEEEEECCC
Confidence 346889999998764 4567888999999988664 44444333 33456666666789999999999
Q ss_pred cC
Q 007296 214 LM 215 (609)
Q Consensus 214 ~~ 215 (609)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 206
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.99 E-value=3.8e-09 Score=107.40 Aligned_cols=136 Identities=13% Similarity=0.266 Sum_probs=77.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
..|+|+|.++||||||+|+|+... |...+.+ .+.-.. ..+....|+.... +.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~------g~i~~~g-~v~~~~------------~~~~t~~D~~~~e--------~~- 54 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFG------GAIREAG-AVKARK------------SRKHATSDWMEIE--------KQ- 54 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhc------CCcccCc-eecccc------------cCCCccCCCcHHH--------Hh-
Confidence 469999999999999999998643 2222222 111000 0011112222111 11
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
.+..++.....++ .+...+.||||||..+. ...+..+++.+|++|+|+.. ..+...+. ..+
T Consensus 55 -rg~si~~~~~~~~---~~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvda-~~g~~~~~-~~i 115 (267)
T cd04169 55 -RGISVTSSVMQFE---YRDCVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDA-AKGVEPQT-RKL 115 (267)
T ss_pred -CCCCeEEEEEEEe---eCCEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEEC-CCCccHHH-HHH
Confidence 1122222222322 23468999999997643 23356778899999887654 44433222 234
Q ss_pred HHHhCCCCCceEEEecccCcCCC
Q 007296 195 SREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+.....+.|+++++||+|+...
T Consensus 116 ~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 116 FEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHhcCCCEEEEEECCccCCC
Confidence 45555567899999999998654
No 207
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.99 E-value=3.8e-09 Score=104.03 Aligned_cols=118 Identities=26% Similarity=0.355 Sum_probs=82.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc--ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG--IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-+|+|+|+.|||||||++++.+..+ +.+.. +++..|....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~~------------------------------------- 47 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKTI------------------------------------- 47 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEEE-------------------------------------
Confidence 5899999999999999999999876 33222 1223332222
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC---cccch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ---DLATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~---d~~~~ 189 (609)
........+.+|||+|.... +.+...|..++++++++++.... +....
T Consensus 48 ----------------~~~~~~~~~~~~Dt~gq~~~-------------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~ 98 (219)
T COG1100 48 ----------------EPYRRNIKLQLWDTAGQEEY-------------RSLRPEYYRGANGILIVYDSTLRESSDELTE 98 (219)
T ss_pred ----------------EeCCCEEEEEeecCCCHHHH-------------HHHHHHHhcCCCEEEEEEecccchhhhHHHH
Confidence 11111345889999997653 67888999999999988765542 23334
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 219 (609)
.|...++...+...+++.|.||+|+.+...
T Consensus 99 ~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 99 EWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHhCCCCceEEEEecccccccchh
Confidence 455555666666789999999999987653
No 208
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.98 E-value=4.6e-09 Score=117.71 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=45.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
+.++||||||.... ..+...++..+|++||+++ +..++..+. ...+..+...+.|+++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~~IlVvD-a~~g~~~qt-~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEAF-------------TNLRKRGGALADIAILVVD-INEGFQPQT-IEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHHH-------------HHHHHHhHhhCCEEEEEEE-CCCCCCHhH-HHHHHHHHHcCCCEEEEEECcCC
Confidence 45899999997653 4455577888999988764 444333322 22333444467899999999998
Q ss_pred CC
Q 007296 215 MD 216 (609)
Q Consensus 215 ~~ 216 (609)
.+
T Consensus 136 ~~ 137 (586)
T PRK04004 136 IP 137 (586)
T ss_pred ch
Confidence 63
No 209
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.97 E-value=1e-09 Score=110.89 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=78.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+--|.+||-|||||||||++++..+---.+.-.+|-.|.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~Pn----------------------------------------- 197 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPN----------------------------------------- 197 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCc-----------------------------------------
Confidence 456789999999999999999988632223334555551
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
.| .+.+ .....+++-|.||++..+..| .-+... -.+.|+++..++.+++.+..+. ..++.
T Consensus 198 LG----------vV~~--~~~~sfv~ADIPGLIEGAs~G--~GLG~~----FLrHIERt~vL~hviD~s~~~~~dp~~~~ 259 (369)
T COG0536 198 LG----------VVRV--DGGESFVVADIPGLIEGASEG--VGLGLR----FLRHIERTRVLLHVIDLSPIDGRDPIEDY 259 (369)
T ss_pred cc----------EEEe--cCCCcEEEecCcccccccccC--CCccHH----HHHHHHhhheeEEEEecCcccCCCHHHHH
Confidence 01 1112 334578999999999987664 222222 2345667888877776554442 11222
Q ss_pred HHHHHHhCC-----CCCceEEEecccCcCCCCC
Q 007296 192 IKISREVDP-----RGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 192 l~l~~~~d~-----~~~rti~VltK~D~~~~~~ 219 (609)
..+..++.. ..++.++|+||+|+.....
T Consensus 260 ~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e 292 (369)
T COG0536 260 QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE 292 (369)
T ss_pred HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH
Confidence 223333332 3588999999999665443
No 210
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.97 E-value=2.6e-09 Score=102.82 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-c--hHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-T--SDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-~--~~~l~l~~~~d~~~~rti~VltK 211 (609)
..+.++||||..... .+...++.++++++++....+.+.. . ..|+..++...+ ..|.|+|.||
T Consensus 49 ~~l~i~Dt~g~~~~~-------------~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK 114 (187)
T cd04129 49 VQLALWDTAGQEEYE-------------RLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLK 114 (187)
T ss_pred EEEEEEECCCChhcc-------------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 367899999975432 1122366889988876544332211 1 124444544444 4899999999
Q ss_pred cCcCCCCCc--------HH--HHHhccccccC-CceeeEeeCChhhhcccccHHH
Q 007296 212 IDLMDKGTD--------AV--DILEGKSYKLR-YPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 212 ~D~~~~~~~--------~~--~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+|+.+.... .. +.........+ .+|+.+++.++.++++.+....
T Consensus 115 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 115 KDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred hhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHH
Confidence 998642210 00 00100011222 3577777777777776665444
No 211
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.5e-09 Score=94.60 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=85.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.-.|.|+|+.|+||+|++-+..|..|-|. .++.+.
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~a---fvsTvG------------------------------------------ 55 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTVG------------------------------------------ 55 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccc---eeeeee------------------------------------------
Confidence 45899999999999999999999988331 111111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~ 191 (609)
+..+...+ ..+.....+.+|||.|..+. +.++..|++++..+||+.+..|.. .+.++|
T Consensus 56 ------idFKvKTv-yr~~kRiklQiwDTagqEry-------------rtiTTayyRgamgfiLmyDitNeeSf~svqdw 115 (193)
T KOG0093|consen 56 ------IDFKVKTV-YRSDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNSVQDW 115 (193)
T ss_pred ------eeEEEeEe-eecccEEEEEEEecccchhh-------------hHHHHHHhhccceEEEEEecCCHHHHHHHHHH
Confidence 11111111 11223357889999997763 778899999999999998776653 233556
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~ 219 (609)
...++.+.-...++|+|.||||+-++..
T Consensus 116 ~tqIktysw~naqvilvgnKCDmd~eRv 143 (193)
T KOG0093|consen 116 ITQIKTYSWDNAQVILVGNKCDMDSERV 143 (193)
T ss_pred HHHheeeeccCceEEEEecccCCcccee
Confidence 6666666677899999999999976653
No 212
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.96 E-value=3.6e-09 Score=104.08 Aligned_cols=133 Identities=20% Similarity=0.317 Sum_probs=75.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
.|+|+|..++|||||+++|++... ..++.. ........| .+.... ++.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~------~~~~~~-----~~~~~~~~~-----------~d~~~~--------e~~-- 49 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTH------DLTPSG-----KDGWKPLRY-----------TDIRKD--------EQE-- 49 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcC------CCcccc-----cccCCceeE-----------CCCCHH--------HHH--
Confidence 589999999999999999998654 111100 000000000 000000 001
Q ss_pred CCCcccCCceEEEEec--CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 116 RSKAISTVPIHLSIFS--PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~--~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+..+....+.+.... .....+.+|||||..+. ...+..++..+|++|++++..+ ..... ...
T Consensus 50 ~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD~~~-~~~~~-~~~ 114 (213)
T cd04167 50 RGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVDVVE-GVTSN-TER 114 (213)
T ss_pred cCccccccceeEEEEcCCCCEEEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEECCC-CCCHH-HHH
Confidence 1122333334433332 22357899999997653 3456788899999988775433 33222 223
Q ss_pred HHHHhCCCCCceEEEecccCcC
Q 007296 194 ISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~ 215 (609)
+.+.....+.+.++|+||+|+.
T Consensus 115 ~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 115 LIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHcCCCEEEEEECcccC
Confidence 4444444568999999999986
No 213
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.2e-09 Score=98.99 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
..+-.++++|+.++|||+||-..++..|-|.-. +++-
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-------~TiG------------------------------------ 40 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-------LTIG------------------------------------ 40 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCcccccc-------ceee------------------------------------
Confidence 357789999999999999999999999854432 1111
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccch
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATS 189 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~ 189 (609)
+..-.-.+.|.+ ....|.+|||.|...+ ++++++|.+.+-..|||.+-.+.+ ....
T Consensus 41 --------vefg~r~~~id~-k~IKlqiwDtaGqe~f-------------rsv~~syYr~a~GalLVydit~r~sF~hL~ 98 (216)
T KOG0098|consen 41 --------VEFGARMVTIDG-KQIKLQIWDTAGQESF-------------RSVTRSYYRGAAGALLVYDITRRESFNHLT 98 (216)
T ss_pred --------eeeceeEEEEcC-ceEEEEEEecCCcHHH-------------HHHHHHHhccCcceEEEEEccchhhHHHHH
Confidence 001111111222 1236779999997654 889999999999888875443332 3345
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcc
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINK 249 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~ 249 (609)
.|+.-+++.....--++++.||+|+.....--.+.-+......++-|...++++++++++
T Consensus 99 ~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEE 158 (216)
T KOG0098|consen 99 SWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEE 158 (216)
T ss_pred HHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHH
Confidence 677777777655678889999999976543111111111122345555566666665544
No 214
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.7e-09 Score=95.66 Aligned_cols=121 Identities=18% Similarity=0.262 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-|-.|++||.-++||+.|....+..- ||-|.|.+--.-..
T Consensus 6 flfkivlvgnagvgktclvrrftqgl-fppgqgatigvdfm--------------------------------------- 45 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFM--------------------------------------- 45 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEE---------------------------------------
Confidence 57899999999999999999999774 57776633222211
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecC-CCc-ccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPA-NQD-LATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a-~~d-~~~~~ 190 (609)
...+++.+ +...|.+|||.|..+. ++++.+|.+.++++||+.+-. ... -...+
T Consensus 46 -----------iktvev~g-ekiklqiwdtagqerf-------------rsitqsyyrsahalilvydiscqpsfdclpe 100 (213)
T KOG0095|consen 46 -----------IKTVEVNG-EKIKLQIWDTAGQERF-------------RSITQSYYRSAHALILVYDISCQPSFDCLPE 100 (213)
T ss_pred -----------EEEEEECC-eEEEEEEeeccchHHH-------------HHHHHHHhhhcceEEEEEecccCcchhhhHH
Confidence 12233333 2357899999997664 889999999999999985432 211 23467
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
|+.-+.++.....-.|+|.||+|+.+..
T Consensus 101 wlreie~yan~kvlkilvgnk~d~~drr 128 (213)
T KOG0095|consen 101 WLREIEQYANNKVLKILVGNKIDLADRR 128 (213)
T ss_pred HHHHHHHHhhcceEEEeeccccchhhhh
Confidence 8877777777777789999999998764
No 215
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.95 E-value=1.9e-09 Score=102.69 Aligned_cols=151 Identities=18% Similarity=0.295 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.--+|+++|.++|||||+++.|.+..+ .+-.|
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~-------~~~~p----------------------------------------- 44 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEI-------SETIP----------------------------------------- 44 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSE-------EEEEE-----------------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccc-------cccCc-----------------------------------------
Confidence 467999999999999999999987654 11112
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.++.-.. +.. +...++++|++|-... +.+...|+++++++|+||++++.+ ..+++.
T Consensus 45 ----T~g~~~~~----i~~-~~~~~~~~d~gG~~~~-------------~~~w~~y~~~~~~iIfVvDssd~~-~l~e~~ 101 (175)
T PF00025_consen 45 ----TIGFNIEE----IKY-KGYSLTIWDLGGQESF-------------RPLWKSYFQNADGIIFVVDSSDPE-RLQEAK 101 (175)
T ss_dssp ----ESSEEEEE----EEE-TTEEEEEEEESSSGGG-------------GGGGGGGHTTESEEEEEEETTGGG-GHHHHH
T ss_pred ----ccccccce----eee-CcEEEEEEeccccccc-------------cccceeeccccceeEEEEecccce-eecccc
Confidence 11111111 111 3357899999996543 456788999999999988766543 222333
Q ss_pred HHHHH-h---CCCCCceEEEecccCcCCCCC--cHHHHHhccccccCCceee--EeeCChhhhcccccHH
Q 007296 193 KISRE-V---DPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKLRYPWIG--VVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l~~~-~---d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~--v~~~s~~~i~~~~~~~ 254 (609)
..... + .-.+.|+++++||.|+.+... +..+.+.-....-+..|.. +.+.+++|+.+.+.++
T Consensus 102 ~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL 171 (175)
T PF00025_consen 102 EELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWL 171 (175)
T ss_dssp HHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHH
T ss_pred cchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHH
Confidence 22222 2 234689999999999876433 2233332122222244443 4455566766655544
No 216
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.95 E-value=5.8e-09 Score=117.36 Aligned_cols=170 Identities=18% Similarity=0.256 Sum_probs=95.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.+..|+|||..++|||||+++|+... |..++... +..+.|..+. ++
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~--------------------~~~~lD~~~~--------Er 51 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM--------------------KAQVLDSMDL--------ER 51 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc--------------------ccccccCchH--------Hh
Confidence 46789999999999999999998642 22221110 0011111111 11
Q ss_pred hcCCCCcccCCceEEEEec--CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFS--PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~--~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
. .+.++....+.+.... .....+.||||||..+. ...+..+++.+|++||+|+ +..+...+.
T Consensus 52 e--rGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aILVVD-as~gv~~qt 115 (600)
T PRK05433 52 E--RGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGALLVVD-ASQGVEAQT 115 (600)
T ss_pred h--cCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEEEEEE-CCCCCCHHH
Confidence 1 1223333444444432 12346899999998764 4457788999999988664 444443333
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCc-HHHHHhccccccCC---ceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTD-AVDILEGKSYKLRY---PWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.. ........+.++|+|+||+|+.+...+ ..+.+.. .++. .++.+++.++.+++++++.+..
T Consensus 116 ~~-~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~---~lg~~~~~vi~iSAktG~GI~~Ll~~I~~ 181 (600)
T PRK05433 116 LA-NVYLALENDLEIIPVLNKIDLPAADPERVKQEIED---VIGIDASDAVLVSAKTGIGIEEVLEAIVE 181 (600)
T ss_pred HH-HHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHH---HhCCCcceEEEEecCCCCCHHHHHHHHHH
Confidence 22 222223356889999999998643211 1112211 1222 2566777777777766655543
No 217
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.95 E-value=6e-09 Score=114.24 Aligned_cols=125 Identities=20% Similarity=0.231 Sum_probs=77.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.+|+|||.+|+||||++|+|+|...+..+.. .+|....++.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 4899999999999999999999876554421 2332221111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCC---cccc
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQ---DLAT 188 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~---d~~~ 188 (609)
. ..+...+.+|||||+..... +....+.+...+..++. .+|++|+ |+.... +...
T Consensus 161 ---------------~-~idG~~L~VIDTPGL~dt~~---dq~~neeILk~Ik~~Lsk~gpDVVLl-V~RLd~~~~D~eD 220 (763)
T TIGR00993 161 ---------------G-LVQGVKIRVIDTPGLKSSAS---DQSKNEKILSSVKKFIKKNPPDIVLY-VDRLDMQTRDSND 220 (763)
T ss_pred ---------------E-EECCceEEEEECCCCCcccc---chHHHHHHHHHHHHHHhcCCCCEEEE-EEeCCCccccHHH
Confidence 0 01234789999999987532 22234455566666776 4776655 444332 2222
Q ss_pred hHHHHHHHHhCCC--CCceEEEecccCcCCC
Q 007296 189 SDAIKISREVDPR--GDRTFGVLTKIDLMDK 217 (609)
Q Consensus 189 ~~~l~l~~~~d~~--~~rti~VltK~D~~~~ 217 (609)
..+++....+-.. -..+|+|+|..|..++
T Consensus 221 ~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 221 LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2344444433322 2689999999999964
No 218
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.94 E-value=6.3e-09 Score=113.22 Aligned_cols=142 Identities=18% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccc-cEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRR-PLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~-p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
--.|+++|..++|||||+++|++..- ..++. .-.++ +. + ...+..-.++.-+.+... .++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g------~i~~~~~~~~~--~~------~---~~~g~~~~~~~~~~D~~~--~Er 66 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETG------AIDEHIIEELR--EE------A---KEKGKESFKFAWVMDRLK--EER 66 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcC------CcCHHHHHHHH--HH------H---HhcCCcccchhhhhccCH--hHh
Confidence 35799999999999999999997542 21111 00000 00 0 000000000111111111 112
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC--cccch-
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ--DLATS- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~--d~~~~- 189 (609)
..| ++.+.....+.. +...++||||||..+.. .. +...+..+|++|++++. +. +...+
T Consensus 67 ~rG----~T~d~~~~~~~~-~~~~i~liDtpG~~~~~------------~~-~~~~~~~aD~~ilVvDa-~~~~~~~~~~ 127 (425)
T PRK12317 67 ERG----VTIDLAHKKFET-DKYYFTIVDCPGHRDFV------------KN-MITGASQADAAVLVVAA-DDAGGVMPQT 127 (425)
T ss_pred hcC----ccceeeeEEEec-CCeEEEEEECCCcccch------------hh-HhhchhcCCEEEEEEEc-ccCCCCCcch
Confidence 223 333433333333 34689999999964321 22 23446789999887654 43 33332
Q ss_pred -HHHHHHHHhCCCC-CceEEEecccCcCC
Q 007296 190 -DAIKISREVDPRG-DRTFGVLTKIDLMD 216 (609)
Q Consensus 190 -~~l~l~~~~d~~~-~rti~VltK~D~~~ 216 (609)
..+.+++. .+ .++++|+||+|+.+
T Consensus 128 ~~~~~~~~~---~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 128 REHVFLART---LGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 22334433 34 36899999999975
No 219
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.93 E-value=6.2e-09 Score=106.20 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+++|||||.... ...+..++..+|++++++.+ ..+...+ ...+.+.+...+.|.++|+||+|
T Consensus 63 ~~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i~Vvd~-~~g~~~~-~~~~~~~~~~~~~p~iivvNK~D 127 (268)
T cd04170 63 GHKINLIDTPGYADF-------------VGETRAALRAADAALVVVSA-QSGVEVG-TEKLWEFADEAGIPRIIFINKMD 127 (268)
T ss_pred CEEEEEEECcCHHHH-------------HHHHHHHHHHCCEEEEEEeC-CCCCCHH-HHHHHHHHHHcCCCEEEEEECCc
Confidence 457899999997542 34466788899999886654 3333222 22344555566889999999999
Q ss_pred cCCC
Q 007296 214 LMDK 217 (609)
Q Consensus 214 ~~~~ 217 (609)
+...
T Consensus 128 ~~~~ 131 (268)
T cd04170 128 RERA 131 (268)
T ss_pred cCCC
Confidence 8754
No 220
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.92 E-value=6.8e-09 Score=97.15 Aligned_cols=102 Identities=10% Similarity=0.023 Sum_probs=59.5
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hHHHHHHHHhC-CCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISREVD-PRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~~l~l~~~~d-~~~~rti~VltK 211 (609)
..+.+|||+|... ..|.+.+|++|+|.+..+.+ +.+ ..++..+.... ....|+++|.||
T Consensus 47 ~~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 47 HLLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred EEEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 4688999999742 24667899999876544432 111 23333333333 245799999999
Q ss_pred cCcCCCCC-cH-HHHHhcccccc-CCceeeEeeCChhhhcccccHH
Q 007296 212 IDLMDKGT-DA-VDILEGKSYKL-RYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 212 ~D~~~~~~-~~-~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.|+..... .. .+..+...... ...|+.+++.++.++++.+...
T Consensus 109 ~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 109 DAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred HHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99853211 11 11111111122 3678889988888887766544
No 221
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.91 E-value=2.3e-09 Score=96.52 Aligned_cols=158 Identities=19% Similarity=0.240 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-+++|||+.-+||||||...+..+| |-=+ -||+-. |
T Consensus 9 frlivigdstvgkssll~~ft~gkf-aels-----dptvgv----------------------d---------------- 44 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTVGV----------------------D---------------- 44 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCccch----------------------H----------------
Confidence 4789999999999999999998876 2111 121100 0
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~l 192 (609)
|-... +++.......|.||||+|..+. ++++++|.+++-.++|+.+-.|.. .....|+
T Consensus 45 -----ffarl--ie~~pg~riklqlwdtagqerf-------------rsitksyyrnsvgvllvyditnr~sfehv~~w~ 104 (213)
T KOG0091|consen 45 -----FFARL--IELRPGYRIKLQLWDTAGQERF-------------RSITKSYYRNSVGVLLVYDITNRESFEHVENWV 104 (213)
T ss_pred -----HHHHH--HhcCCCcEEEEEEeeccchHHH-------------HHHHHHHhhcccceEEEEeccchhhHHHHHHHH
Confidence 00001 1122233457899999997654 889999999998887765544432 1123344
Q ss_pred HHHHH-hC-CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISRE-VD-PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~-~d-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+-|.. +. |...-..+|.+|+|+.....-..+..+......+.-|+..+.+++.++++...++..
T Consensus 105 ~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 105 KEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred HHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHH
Confidence 43332 33 555556788999999854432222222223455677888999999888877766654
No 222
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.90 E-value=9.9e-09 Score=118.07 Aligned_cols=134 Identities=13% Similarity=0.180 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..|+|+|..++|||||+|+|++..- ...+ ...+ . ++....|+... ++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~~~~-~~~~-----~-----------~g~~~~D~~~~--------e~ 57 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------RIHK-IGEV-----H-----------DGAATMDWMEQ--------EK 57 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------Cccc-cccc-----c-----------CCccccCCCHH--------HH
Confidence 578999999999999999999975421 1111 0000 0 00111122111 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..| ++-+.....+.. +...++||||||..+. ...+..+++.+|++|++++ +..+...++ .
T Consensus 58 ~rg----iti~~~~~~~~~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVvd-a~~g~~~~~-~ 117 (689)
T TIGR00484 58 ERG----ITITSAATTVFW-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVLD-AVGGVQPQS-E 117 (689)
T ss_pred hcC----CCEecceEEEEE-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEEe-CCCCCChhH-H
Confidence 122 232222222333 3458999999998753 2246788899999988764 444444433 3
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+++.+...+.|+++|+||+|+...
T Consensus 118 ~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 118 TVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 4556666678999999999999854
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.89 E-value=3e-09 Score=105.13 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=47.6
Q ss_pred cccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC------cccchHHH
Q 007296 119 AISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ------DLATSDAI 192 (609)
Q Consensus 119 ~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~------d~~~~~~l 192 (609)
+++.+.....+.. ....++||||||..+. ...+..++..+|++|+||+.... +...+. .
T Consensus 62 g~T~d~~~~~~~~-~~~~i~liDtpG~~~~-------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~-~ 126 (219)
T cd01883 62 GVTIDVGLAKFET-EKYRFTILDAPGHRDF-------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQT-R 126 (219)
T ss_pred ccCeecceEEEee-CCeEEEEEECCChHHH-------------HHHHHHHhhhCCEEEEEEECCCCccccccccccch-H
Confidence 3444444443333 4568999999996432 12234567789999887655432 121111 1
Q ss_pred HHHHHhCCCC-CceEEEecccCcCC
Q 007296 193 KISREVDPRG-DRTFGVLTKIDLMD 216 (609)
Q Consensus 193 ~l~~~~d~~~-~rti~VltK~D~~~ 216 (609)
.........+ .|+|+|+||+|+..
T Consensus 127 ~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 127 EHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHHcCCCeEEEEEEcccccc
Confidence 1222222233 67899999999984
No 224
>CHL00071 tufA elongation factor Tu
Probab=98.87 E-value=4.8e-09 Score=113.38 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=47.1
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLTK 211 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK 211 (609)
+...++|+||||..+ .+..+ ..-+..+|+++|+| ++..+...++. ..+..+...|.| .|+|+||
T Consensus 73 ~~~~~~~iDtPGh~~------------~~~~~-~~~~~~~D~~ilVv-da~~g~~~qt~-~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 73 ENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVV-SAADGPMPQTK-EHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred CCeEEEEEECCChHH------------HHHHH-HHHHHhCCEEEEEE-ECCCCCcHHHH-HHHHHHHHcCCCEEEEEEEc
Confidence 445789999999532 23333 44567899998865 45555544432 355556666777 6789999
Q ss_pred cCcCCCC
Q 007296 212 IDLMDKG 218 (609)
Q Consensus 212 ~D~~~~~ 218 (609)
+|+.+..
T Consensus 138 ~D~~~~~ 144 (409)
T CHL00071 138 EDQVDDE 144 (409)
T ss_pred cCCCCHH
Confidence 9998643
No 225
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.84 E-value=9.8e-09 Score=104.03 Aligned_cols=39 Identities=23% Similarity=0.235 Sum_probs=30.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEE
Q 007296 37 IAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQ 75 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~ 75 (609)
|++||.||||||||+|+|+|.+.-+.+...||+-|..-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~ 39 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGI 39 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeee
Confidence 589999999999999999999864445566777774433
No 226
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.84 E-value=5.1e-09 Score=92.61 Aligned_cols=24 Identities=33% Similarity=0.709 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
+|+|+|+.+||||||+++|.+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999875
No 227
>PTZ00258 GTP-binding protein; Provisional
Probab=98.84 E-value=1.4e-08 Score=107.40 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+-.+|++||.||||||||+|+|+|..........||+-|..-.+...+.. + +.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r-------------~--------------~~ 72 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDER-------------F--------------DW 72 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccch-------------h--------------hH
Confidence 56799999999999999999999988644455678877765553211110 0 00
Q ss_pred hcCCCCcccCCceEEEEecC---CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 113 ETGRSKAISTVPIHLSIFSP---NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~---~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
+.. +..| ...++.|+||||+......+ +.+.+-....|+++|+++++|..
T Consensus 73 l~~-------------~~~~~~~~~aqi~lvDtpGLv~ga~~g------~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 73 LCK-------------HFKPKSIVPAQLDITDIAGLVKGASEG------EGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred HHH-------------HcCCcccCCCCeEEEECCCcCcCCcch------hHHHHHHHHHHHHCCEEEEEEeC
Confidence 000 1111 12368999999999754331 22233445668899999887754
No 228
>PLN00023 GTP-binding protein; Provisional
Probab=98.83 E-value=1.7e-08 Score=103.62 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=47.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHHHHHHhCC------------
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVDP------------ 200 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~l~~~~d~------------ 200 (609)
..+.||||+|..+. +.+...|+++++++|+|++..+... ....|++.+.....
T Consensus 83 v~LqIWDTAGqErf-------------rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 83 FFVELWDVSGHERY-------------KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEEECCCChhh-------------hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 35789999997653 6678889999999999875544221 12234444443311
Q ss_pred CCCceEEEecccCcCCC
Q 007296 201 RGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 201 ~~~rti~VltK~D~~~~ 217 (609)
...++|+|.||+|+.++
T Consensus 150 ~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 150 LPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCcEEEEEECcccccc
Confidence 13689999999999754
No 229
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.83 E-value=4.8e-09 Score=94.21 Aligned_cols=153 Identities=22% Similarity=0.272 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-.-.|.+||+.++||||||-+.+...|-|-. |
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~-------~----------------------------------------- 41 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLH-------P----------------------------------------- 41 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccC-------C-----------------------------------------
Confidence 4679999999999999999999987762211 1
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~~~~ 191 (609)
.+-|+..+.-.+.+-+ +...|.||||+|..++ +.++.+|.+.+..||||.+-...| +.+-+
T Consensus 42 ---~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqErF-------------RtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd- 103 (209)
T KOG0080|consen 42 ---TTIGVDFKVKVMQVDG-KRLKLAIWDTAGQERF-------------RTLTPSYYRGAQGIILVYDVTSRDTFVKLD- 103 (209)
T ss_pred ---ceeeeeEEEEEEEEcC-ceEEEEEEeccchHhh-------------hccCHhHhccCceeEEEEEccchhhHHhHH-
Confidence 1223333344444444 3458999999997764 788999999999999986443333 11111
Q ss_pred HHHHHHhCCC----CCceEEEecccCcCCCCCcHHHHHhcccc--ccCCceeeEeeCChhhhcccccHH
Q 007296 192 IKISREVDPR----GDRTFGVLTKIDLMDKGTDAVDILEGKSY--KLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 192 l~l~~~~d~~----~~rti~VltK~D~~~~~~~~~~~l~~~~~--~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.++++++.. ..-.++|.||+|.-.+.. .+--+|... ..+.-|+..+++..+++...+...
T Consensus 104 -~W~~Eld~Ystn~diikmlVgNKiDkes~R~--V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel 169 (209)
T KOG0080|consen 104 -IWLKELDLYSTNPDIIKMLVGNKIDKESERV--VDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL 169 (209)
T ss_pred -HHHHHHHhhcCCccHhHhhhcccccchhccc--ccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence 245555533 234578999999753221 111112222 223335555555555555444333
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.83 E-value=1.2e-08 Score=110.19 Aligned_cols=101 Identities=13% Similarity=0.201 Sum_probs=57.5
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH--HHHHHHHhCCCCCceEEEec
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD--AIKISREVDPRGDRTFGVLT 210 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~--~l~l~~~~d~~~~rti~Vlt 210 (609)
+...++||||||..+. +.++. .-+..+|++||+| ++..++..+. .+.+++.+. ..+.|+|+|
T Consensus 78 ~~~~~~liDtPGh~~f------------~~~~~-~~~~~aD~allVV-da~~G~~~qt~~~~~~~~~~~--~~~iivviN 141 (406)
T TIGR02034 78 DKRKFIVADTPGHEQY------------TRNMA-TGASTADLAVLLV-DARKGVLEQTRRHSYIASLLG--IRHVVLAVN 141 (406)
T ss_pred CCeEEEEEeCCCHHHH------------HHHHH-HHHhhCCEEEEEE-ECCCCCccccHHHHHHHHHcC--CCcEEEEEE
Confidence 3458999999995432 23333 4567899998866 4555554433 334555443 246888999
Q ss_pred ccCcCCCCCcHHHHHhcc------cccc-CCceeeEeeCChhhhcc
Q 007296 211 KIDLMDKGTDAVDILEGK------SYKL-RYPWIGVVNRSQADINK 249 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~~~------~~~l-~~g~~~v~~~s~~~i~~ 249 (609)
|+|+.+...+..+.+... .... ...++.+++.++.++..
T Consensus 142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 999985332221111110 0111 23466777777666654
No 231
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.80 E-value=9.6e-09 Score=94.68 Aligned_cols=160 Identities=16% Similarity=0.253 Sum_probs=96.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.|-.|++.|++++|||||+|.++..+|.- ..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~-------------------------------------------------qy 38 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQ-------------------------------------------------QY 38 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHH-------------------------------------------------Hh
Confidence 57899999999999999999999988710 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEe-cCCCcccc-hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAIS-PANQDLAT-SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~-~a~~d~~~-~~ 190 (609)
....+..|-.+.+. |. .....|.+|||.|..+. +++-..|.+.+||.+|+.. +....+.+ .-
T Consensus 39 kaTIgadFltKev~--Vd-~~~vtlQiWDTAGQERF-------------qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~ 102 (210)
T KOG0394|consen 39 KATIGADFLTKEVQ--VD-DRSVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNNPKSFENLEN 102 (210)
T ss_pred ccccchhheeeEEE--Ec-CeEEEEEEEecccHHHh-------------hhcccceecCCceEEEEeecCChhhhccHHH
Confidence 00012223333333 22 34567899999998775 4555678899999988732 11111211 12
Q ss_pred HH-HHHHHh---CCCCCceEEEecccCcCCCCCc--HHHHHhcc-ccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AI-KISREV---DPRGDRTFGVLTKIDLMDKGTD--AVDILEGK-SYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l-~l~~~~---d~~~~rti~VltK~D~~~~~~~--~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
|. +++... +|..-|.|++.||+|+-+.... ..+..+.. .-.-..+||.+++..+.++...+.....+
T Consensus 103 Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 103 WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHH
Confidence 22 244444 4566799999999998653211 11111111 11224788888887776666655544433
No 232
>PRK00007 elongation factor G; Reviewed
Probab=98.79 E-value=2.1e-08 Score=115.29 Aligned_cols=135 Identities=13% Similarity=0.184 Sum_probs=82.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..|+|||.+++|||||+|+|+... |...+ .. +.. .+..+.|+.... +
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~------g~~~~-~g-----~v~-----------~~~~~~D~~~~E--------~ 57 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYT------GVNHK-IG-----EVH-----------DGAATMDWMEQE--------Q 57 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhc------CCccc-cc-----ccc-----------CCcccCCCCHHH--------H
Confidence 57899999999999999999997321 00000 00 000 001122222111 1
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..+++-+.....+.. ....++||||||..+. ..-+...+..+|++|++| ++..+...++ .
T Consensus 58 ----~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~f-------------~~ev~~al~~~D~~vlVv-da~~g~~~qt-~ 117 (693)
T PRK00007 58 ----ERGITITSAATTCFW-KDHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVF-DAVGGVEPQS-E 117 (693)
T ss_pred ----hCCCCEeccEEEEEE-CCeEEEEEeCCCcHHH-------------HHHHHHHHHHcCEEEEEE-ECCCCcchhh-H
Confidence 122333333333333 3458999999997542 112566778889888866 5666665555 3
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
.+++.+...+.|.|+++||+|+.+..
T Consensus 118 ~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 118 TVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 47777777889999999999998643
No 233
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.77 E-value=3.5e-08 Score=103.25 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=61.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|++||.||||||||+|+|+|.+....+...||+-|..-.+.-.+...++ + ..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~----------------l--------~~-- 56 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDK----------------L--------AE-- 56 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchh----------------h--------HH--
Confidence 589999999999999999999988533344567777754332111100000 0 00
Q ss_pred CCCCcccCCceEEEEecCC--C-CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 115 GRSKAISTVPIHLSIFSPN--V-VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~--~-~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
++.|. . ..+.|+|+||+...... .+.+.+-....++++|++++||..
T Consensus 57 --------------~~~p~~~~~a~i~lvD~pGL~~~a~~------g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 57 --------------IVKPKKIVPATIEFVDIAGLVKGASK------GEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred --------------hcCCccccCceEEEEECCCCCCCCCh------HHHHHHHHHHHHHhCCEEEEEEeC
Confidence 11111 1 25899999999874432 122333445667899999887654
No 234
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.77 E-value=2.9e-08 Score=97.56 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
...|++++.|..|+|||||||.++..+. -+.+ ....|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~-~~~t--~k~K~---------------------------------------- 170 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKN-IADT--SKSKN---------------------------------------- 170 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhh-hhhh--cCCCC----------------------------------------
Confidence 4678999999999999999999987653 1111 11011
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEE--EEEecCCCcccch
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCII--LAISPANQDLATS 189 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iI--L~v~~a~~d~~~~ 189 (609)
|.++.+ ..+ .-...+.+||+||+..... +.+..+.+.+++..|+.+-+..+ ++.+++...+...
T Consensus 171 ---g~Tq~i-------n~f-~v~~~~~~vDlPG~~~a~y---~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~ 236 (320)
T KOG2486|consen 171 ---GKTQAI-------NHF-HVGKSWYEVDLPGYGRAGY---GFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPT 236 (320)
T ss_pred ---ccceee-------eee-eccceEEEEecCCcccccC---CccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCC
Confidence 111111 111 1124788999999655322 23345556888999987543222 2234666666666
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCc--H---HHH---Hh---ccccccCCceeeEeeCChhhhcccc
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTD--A---VDI---LE---GKSYKLRYPWIGVVNRSQADINKSV 251 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~---~~~---l~---~~~~~l~~g~~~v~~~s~~~i~~~~ 251 (609)
|.. .+..+...+.|...|+||||.+..... . ..+ +. -......++|.-++.++..+++.+.
T Consensus 237 D~~-~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 237 DNP-EIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred ChH-HHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeee
Confidence 653 677778888999999999999754321 0 011 11 1123334567777777666665544
No 235
>PRK12739 elongation factor G; Reviewed
Probab=98.77 E-value=2.2e-08 Score=115.21 Aligned_cols=134 Identities=14% Similarity=0.215 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..|+|||..++|||||+|+|+... |...+.. ... .+..+.|+... ++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~------g~~~~~~------~v~-----------~~~~~~D~~~~--------E~ 55 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYT------GKSHKIG------EVH-----------DGAATMDWMEQ--------EQ 55 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhC------CCccccc------ccc-----------CCccccCCChh--------Hh
Confidence 57889999999999999999997532 1000000 000 00111222211 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..+++-+.....+.. +...++||||||..+. ...+..++..+|++|++| ++..+...++.
T Consensus 56 ----~rgiti~~~~~~~~~-~~~~i~liDTPG~~~f-------------~~e~~~al~~~D~~ilVv-Da~~g~~~qt~- 115 (691)
T PRK12739 56 ----ERGITITSAATTCFW-KGHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVF-DAVSGVEPQSE- 115 (691)
T ss_pred ----hcCCCccceeEEEEE-CCEEEEEEcCCCHHHH-------------HHHHHHHHHHhCeEEEEE-eCCCCCCHHHH-
Confidence 122333322222322 3458999999997542 234778889999988865 45555554443
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+++.+...+.|.|+++||+|+...
T Consensus 116 ~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 116 TVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCC
Confidence 4667777778999999999999854
No 236
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.76 E-value=5.6e-08 Score=95.73 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---HHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~---~~l~l~~~~d~~~~rti~VltK 211 (609)
..+.+|||||..+. ..+...|+..++++|++++. +...+-. .++....... ...++++|.||
T Consensus 58 i~i~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~-~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK 122 (215)
T PTZ00132 58 ICFNVWDTAGQEKF-------------GGLRDGYYIKGQCAIIMFDV-TSRITYKNVPNWHRDIVRVC-ENIPIVLVGNK 122 (215)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHhccCCEEEEEEEC-cCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 46789999996442 34556788889988886643 3222111 2222222232 34788899999
Q ss_pred cCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 212 IDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+|+.+..... +... .....+..|+.+++.++.++++.+..+.+
T Consensus 123 ~Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~ 165 (215)
T PTZ00132 123 VDVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEKPFLWLAR 165 (215)
T ss_pred ccCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9986533211 1111 11223456888888888877665554443
No 237
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.76 E-value=1.2e-07 Score=88.01 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
+.-..|+|+|.+++||+|++.+++... +++-.+..+..-.-.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~-~v~t~~~~~~~s~k~------------------------------------- 49 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKP-LVITEADASSVSGKG------------------------------------- 49 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccc-cceeecccccccccc-------------------------------------
Confidence 457899999999999999999999875 222212111100000
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
-....++.+.-.+.+. +...+.|+||||..+. +-|+.-+.+.+..+|++|+++ .+... .+
T Consensus 50 ---kr~tTva~D~g~~~~~--~~~~v~LfgtPGq~RF-------------~fm~~~l~~ga~gaivlVDss-~~~~~-~a 109 (187)
T COG2229 50 ---KRPTTVAMDFGSIELD--EDTGVHLFGTPGQERF-------------KFMWEILSRGAVGAIVLVDSS-RPITF-HA 109 (187)
T ss_pred ---ccceeEeecccceEEc--CcceEEEecCCCcHHH-------------HHHHHHHhCCcceEEEEEecC-CCcch-HH
Confidence 0001122222222222 3357899999998774 778888899999888876543 33322 45
Q ss_pred HHHHHHhCCCC-CceEEEecccCcCCCCC--cHHHHHhccccccCCceeeEeeCChhh
Q 007296 192 IKISREVDPRG-DRTFGVLTKIDLMDKGT--DAVDILEGKSYKLRYPWIGVVNRSQAD 246 (609)
Q Consensus 192 l~l~~~~d~~~-~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~ 246 (609)
..+...+.... .|.++.+||.|+.+... ...+++.-.. +..+-++...+..++
T Consensus 110 ~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~--~~~~vi~~~a~e~~~ 165 (187)
T COG2229 110 EEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL--LSVPVIEIDATEGEG 165 (187)
T ss_pred HHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc--CCCceeeeecccchh
Confidence 55666655555 89999999999987643 3445543211 345555555443333
No 238
>PLN03127 Elongation factor Tu; Provisional
Probab=98.76 E-value=2.3e-08 Score=108.83 Aligned_cols=131 Identities=16% Similarity=0.210 Sum_probs=75.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-..|+++|..++|||||+++|+|... ..|.. .... |. ..|... .+
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~--~~~~-------------~~---------~~D~~~--------~E-- 105 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA--KAVA-------------FD---------EIDKAP--------EE-- 105 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc--ccee-------------ec---------cccCCh--------hH--
Confidence 45699999999999999999986421 11110 0000 00 000000 01
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
...+++-+........ +...++|+||||..+ .+.+++. -+..+|+++|+| +++.+...++ .+
T Consensus 106 --~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~------------f~~~~~~-g~~~aD~allVV-da~~g~~~qt-~e 167 (447)
T PLN03127 106 --KARGITIATAHVEYET-AKRHYAHVDCPGHAD------------YVKNMIT-GAAQMDGGILVV-SAPDGPMPQT-KE 167 (447)
T ss_pred --hhcCceeeeeEEEEcC-CCeEEEEEECCCccc------------hHHHHHH-HHhhCCEEEEEE-ECCCCCchhH-HH
Confidence 1233444444444333 345789999999753 2344443 345699998865 5655554443 34
Q ss_pred HHHHhCCCCCc-eEEEecccCcCCC
Q 007296 194 ISREVDPRGDR-TFGVLTKIDLMDK 217 (609)
Q Consensus 194 l~~~~d~~~~r-ti~VltK~D~~~~ 217 (609)
.+..+...+.+ .|+|+||+|+++.
T Consensus 168 ~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 168 HILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHcCCCeEEEEEEeeccCCH
Confidence 55556666778 4789999999863
No 239
>PRK10218 GTP-binding protein; Provisional
Probab=98.75 E-value=4.9e-08 Score=109.48 Aligned_cols=131 Identities=14% Similarity=0.232 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCC-cCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKD-FLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
++..|+|+|..++|||||+++|++.. .+++.. .+. ... .|....
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~-~~~----~~v---------------------~D~~~~--------- 48 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRA-ETQ----ERV---------------------MDSNDL--------- 48 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCccccc-ccc----eee---------------------eccccc---------
Confidence 57899999999999999999999632 111110 000 000 000000
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
....+++-..-...+.. +...+.||||||..+. ...+..+++.+|++|++++. ..+...+..
T Consensus 49 ---E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df-------------~~~v~~~l~~aDg~ILVVDa-~~G~~~qt~ 110 (607)
T PRK10218 49 ---EKERGITILAKNTAIKW-NDYRINIVDTPGHADF-------------GGEVERVMSMVDSVLLVVDA-FDGPMPQTR 110 (607)
T ss_pred ---cccCceEEEEEEEEEec-CCEEEEEEECCCcchh-------------HHHHHHHHHhCCEEEEEEec-ccCccHHHH
Confidence 01122332222222322 3468999999997654 34567889999999887654 444333332
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
..++.+...+.|.|+|+||+|+...
T Consensus 111 -~~l~~a~~~gip~IVviNKiD~~~a 135 (607)
T PRK10218 111 -FVTKKAFAYGLKPIVVINKVDRPGA 135 (607)
T ss_pred -HHHHHHHHcCCCEEEEEECcCCCCC
Confidence 2344444467899999999998643
No 240
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.75 E-value=3e-08 Score=107.07 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=57.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c--chHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A--TSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~--~~~~l~l~~~~d~~~~rti~VltK 211 (609)
..++||||||..+. ...+..++..+|+++|+|+ ++... . +.+.+.++.... ..+.++|+||
T Consensus 80 ~~i~liDtPGh~~f-------------~~~~~~g~~~aD~aIlVVD-a~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 80 RRVSFVDAPGHETL-------------MATMLSGAALMDGALLVIA-ANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred cEEEEEECCCHHHH-------------HHHHHHHHHHCCEEEEEEE-CCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 46899999996432 2234555678899988665 44332 2 223333333222 2468999999
Q ss_pred cCcCCCCCc--HHHHHhccc---cccCCceeeEeeCChhhhcccccHHH
Q 007296 212 IDLMDKGTD--AVDILEGKS---YKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 212 ~D~~~~~~~--~~~~l~~~~---~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+|+.+.... ..+.+.... ......++.+++.++.+++.++..+.
T Consensus 144 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~ 192 (406)
T TIGR03680 144 IDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIE 192 (406)
T ss_pred cccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHH
Confidence 999864311 111111110 11134566677776666655444443
No 241
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.75 E-value=4.9e-09 Score=92.80 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
..|-...|+|++++|||||+-....-.| --+.-+++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtF-s~sYitTi------------------------------------------- 41 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTF-SGSYITTI------------------------------------------- 41 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhccc-ccceEEEe-------------------------------------------
Confidence 4577788999999999999999887665 11111111
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCC--Ccccch
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPAN--QDLATS 189 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~--~d~~~~ 189 (609)
|+....-.+.|.+ +...|.||||+|..+ ++.++..|.+.++.+|++.+-.| .-....
T Consensus 42 -------GvDfkirTv~i~G-~~VkLqIwDtAGqEr-------------Frtitstyyrgthgv~vVYDVTn~ESF~Nv~ 100 (198)
T KOG0079|consen 42 -------GVDFKIRTVDING-DRVKLQIWDTAGQER-------------FRTITSTYYRGTHGVIVVYDVTNGESFNNVK 100 (198)
T ss_pred -------eeeEEEEEeecCC-cEEEEEEeecccHHH-------------HHHHHHHHccCCceEEEEEECcchhhhHhHH
Confidence 1112222233443 335789999999654 48899999999999988754333 223335
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
.|++-++.-.+ ..+-++|.||.|..+..
T Consensus 101 rWLeei~~ncd-sv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 101 RWLEEIRNNCD-SVPKVLVGNKNDDPERR 128 (198)
T ss_pred HHHHHHHhcCc-cccceecccCCCCccce
Confidence 67766665555 46789999999987654
No 242
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.74 E-value=4.5e-08 Score=86.83 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
--.+.+||-|+|||||+.|.+.-..+ -++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~-~ed-------------------------------------------------- 48 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY-LED-------------------------------------------------- 48 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc-hhh--------------------------------------------------
Confidence 34789999999999999999875444 111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc---chH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA---TSD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~---~~~ 190 (609)
.+++.||. +.-...++..+.++|+||.-+. +.|...|.+..++|+.+|++|..+-- .++
T Consensus 49 miptvGfn-----mrk~tkgnvtiklwD~gGq~rf-------------rsmWerycR~v~aivY~VDaad~~k~~~sr~E 110 (186)
T KOG0075|consen 49 MIPTVGFN-----MRKVTKGNVTIKLWDLGGQPRF-------------RSMWERYCRGVSAIVYVVDAADPDKLEASRSE 110 (186)
T ss_pred hcccccce-----eEEeccCceEEEEEecCCCccH-------------HHHHHHHhhcCcEEEEEeecCCcccchhhHHH
Confidence 11222221 1122344567789999997664 89999999999999999888775422 223
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
-..+...-.-.|.|.++..||.|+.+.-
T Consensus 111 L~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 111 LHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred HHHHhcchhhcCCcEEEecccccCcccc
Confidence 2334444444689999999999987543
No 243
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.74 E-value=3.7e-08 Score=110.60 Aligned_cols=129 Identities=17% Similarity=0.281 Sum_probs=76.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC-cCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD-FLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..|+|||..++|||||+++|+... .+... +.++. .+.|.... ++.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~-~~v~~-------------------------~~~D~~~~--------Ere 47 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRAN-EAVAE-------------------------RVMDSNDL--------ERE 47 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCccc-cccee-------------------------ecccCchH--------HHh
Confidence 369999999999999999998531 11111 11110 11122221 111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.| .++......+. + +...+.||||||..+. ...+..+++.+|+++|+|+. ..+...+.. .
T Consensus 48 rG--iTI~~~~~~v~--~-~~~kinlIDTPGh~DF-------------~~ev~~~l~~aD~alLVVDa-~~G~~~qT~-~ 107 (594)
T TIGR01394 48 RG--ITILAKNTAIR--Y-NGTKINIVDTPGHADF-------------GGEVERVLGMVDGVLLLVDA-SEGPMPQTR-F 107 (594)
T ss_pred CC--ccEEeeeEEEE--E-CCEEEEEEECCCHHHH-------------HHHHHHHHHhCCEEEEEEeC-CCCCcHHHH-H
Confidence 12 22333333332 2 3468999999997553 34567889999999887654 444433322 2
Q ss_pred HHHHhCCCCCceEEEecccCcCCC
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
+++.+...+.|.|+|+||+|+.+.
T Consensus 108 ~l~~a~~~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 108 VLKKALELGLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCc
Confidence 344444467899999999998653
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.73 E-value=1.5e-08 Score=115.45 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=43.8
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--HHHHHHHHhCCCCCceEEEe
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPRGDRTFGVL 209 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~~l~l~~~~d~~~~rti~Vl 209 (609)
.+...++||||||..+ .+..+. ..+..+|+++|+| ++..+...+ +.+.++..+.. .+.|+|+
T Consensus 101 ~~~~~~~liDtPG~~~------------f~~~~~-~~~~~aD~~llVv-da~~g~~~~t~e~~~~~~~~~~--~~iivvv 164 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ------------YTRNMV-TGASTADLAIILV-DARKGVLTQTRRHSFIASLLGI--RHVVLAV 164 (632)
T ss_pred cCCceEEEEECCChHH------------HHHHHH-HHHHhCCEEEEEE-ECCCCccccCHHHHHHHHHhCC--CeEEEEE
Confidence 3456899999999543 123333 3477899988865 455444332 33345544421 5688899
Q ss_pred cccCcCC
Q 007296 210 TKIDLMD 216 (609)
Q Consensus 210 tK~D~~~ 216 (609)
||+|+.+
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999985
No 245
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.72 E-value=9.5e-08 Score=99.66 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=82.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc----------ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHH
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG----------IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRK 104 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~----------~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (609)
-.|.|||+-++|||||+|++++.-++|--+. +++..|..+.
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktI----------------------------- 68 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTI----------------------------- 68 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCc-----------------------------
Confidence 4699999999999999999999966554321 1111110000
Q ss_pred HHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchH----------------HHHHHHHHHh
Q 007296 105 EISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIV----------------QDIENMVRSY 168 (609)
Q Consensus 105 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~----------------~~i~~~v~~y 168 (609)
.+...+-+-.+.+.+.....-..++.||||+|+.....-|.-.... +..+-=+++-
T Consensus 69 --------tTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kV 140 (492)
T TIGR02836 69 --------MTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKV 140 (492)
T ss_pred --------ccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHH
Confidence 0000111222334443332223578999999988654333221111 1111125677
Q ss_pred hc-CCceEEEEEecCC------CcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 169 IE-KPNCIILAISPAN------QDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 169 i~-~~~~iIL~v~~a~------~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
|. +++..|+++++++ .+.... ..++..++...++|+|+|+||.|-.
T Consensus 141 I~dhstIgivVtTDgsi~dI~Re~y~~a-Ee~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 141 IQEHSTIGVVVTTDGTITDIPREDYVEA-EERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred HHhcCcEEEEEEcCCCccccccccchHH-HHHHHHHHHhcCCCEEEEEECcCCC
Confidence 87 7777766654653 122222 2357888888999999999999944
No 246
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.72 E-value=9.5e-08 Score=104.92 Aligned_cols=102 Identities=15% Similarity=0.168 Sum_probs=57.7
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--HHHHHHHHhCCCCCceEEEe
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPRGDRTFGVL 209 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~~l~l~~~~d~~~~rti~Vl 209 (609)
.+...++||||||..+ .+.+++.. +..+|+++|+| +++.+...+ +.+.++..+.. .++|+|+
T Consensus 104 ~~~~~i~~iDTPGh~~------------f~~~~~~~-l~~aD~allVV-Da~~G~~~qt~~~~~l~~~lg~--~~iIvvv 167 (474)
T PRK05124 104 TEKRKFIIADTPGHEQ------------YTRNMATG-ASTCDLAILLI-DARKGVLDQTRRHSFIATLLGI--KHLVVAV 167 (474)
T ss_pred cCCcEEEEEECCCcHH------------HHHHHHHH-HhhCCEEEEEE-ECCCCccccchHHHHHHHHhCC--CceEEEE
Confidence 4456899999999432 22344444 58899998865 455554332 23335554442 4689999
Q ss_pred cccCcCCCCCcHHH----HHhccccc----cCCceeeEeeCChhhhcc
Q 007296 210 TKIDLMDKGTDAVD----ILEGKSYK----LRYPWIGVVNRSQADINK 249 (609)
Q Consensus 210 tK~D~~~~~~~~~~----~l~~~~~~----l~~g~~~v~~~s~~~i~~ 249 (609)
||+|+.+...+..+ .+...... ....++.++..++.++..
T Consensus 168 NKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 168 NKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred EeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 99999853322111 11110011 124466677766676654
No 247
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.71 E-value=2e-08 Score=108.06 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=72.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
--.|+++|..++|||||+++|++.- ...|.+ +.+. + ...|.. . .++.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~---------~~~~------~---------~~~d~~--~------~E~~ 58 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVL-AKEGGA---------AARA------Y---------DQIDNA--P------EEKA 58 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhH-HHhhcc---------cccc------c---------ccccCC--H------HHHh
Confidence 4579999999999999999998652 111110 0000 0 000000 0 0111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+++-+...+.+.. +...++||||||..+. +.++ ...+..+|+++|++ ++..+...+. .+
T Consensus 59 ----rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~f------------~~~~-~~~~~~~D~~ilVv-da~~g~~~qt-~e 118 (394)
T TIGR00485 59 ----RGITINTAHVEYET-ENRHYAHVDCPGHADY------------VKNM-ITGAAQMDGAILVV-SATDGPMPQT-RE 118 (394)
T ss_pred ----cCcceeeEEEEEcC-CCEEEEEEECCchHHH------------HHHH-HHHHhhCCEEEEEE-ECCCCCcHHH-HH
Confidence 23333333443332 3457899999996432 2333 33456789988865 4554443333 23
Q ss_pred HHHHhCCCCCceE-EEecccCcCCC
Q 007296 194 ISREVDPRGDRTF-GVLTKIDLMDK 217 (609)
Q Consensus 194 l~~~~d~~~~rti-~VltK~D~~~~ 217 (609)
.+..+...+.+.+ +|+||+|+.+.
T Consensus 119 ~l~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 119 HILLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHHHcCCCEEEEEEEecccCCH
Confidence 4444445567765 68999999864
No 248
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.70 E-value=7e-08 Score=105.09 Aligned_cols=102 Identities=13% Similarity=0.306 Sum_probs=56.2
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccch--HHHHHHHHhCCCCCceEEE
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATS--DAIKISREVDPRGDRTFGV 208 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~--~~l~l~~~~d~~~~rti~V 208 (609)
+...++||||||..+. +. .+..++..+|++||+++..+.. ...+ ..+.+++... ..++|+|
T Consensus 83 ~~~~i~iiDtpGh~~f------------~~-~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDF------------IK-NMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHHH------------HH-HHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEEE
Confidence 3458999999995321 22 2344578899998877554331 2222 2223444432 2478899
Q ss_pred ecccCcCCCCCc--------HHHHHhccccc-cCCceeeEeeCChhhhcc
Q 007296 209 LTKIDLMDKGTD--------AVDILEGKSYK-LRYPWIGVVNRSQADINK 249 (609)
Q Consensus 209 ltK~D~~~~~~~--------~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~ 249 (609)
+||+|+.+...+ ..+++...... ....|+.+++.++.++.+
T Consensus 148 iNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 999999753221 11222111111 124567777777777655
No 249
>PRK12735 elongation factor Tu; Reviewed
Probab=98.70 E-value=5.1e-08 Score=104.97 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=44.7
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEecc
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTF-GVLTK 211 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK 211 (609)
+...++|+||||..+ .+..+ ..-+..+|.++|++. +..+...+.. +.+..+...+.+.+ +|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~-~~~~~~aD~~llVvd-a~~g~~~qt~-e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 73 ANRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVS-AADGPMPQTR-EHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCcEEEEEECCCHHH------------HHHHH-HhhhccCCEEEEEEE-CCCCCchhHH-HHHHHHHHcCCCeEEEEEEe
Confidence 445789999999632 22333 344668899888654 5444444432 34455555677865 57999
Q ss_pred cCcCCC
Q 007296 212 IDLMDK 217 (609)
Q Consensus 212 ~D~~~~ 217 (609)
+|+.+.
T Consensus 138 ~Dl~~~ 143 (396)
T PRK12735 138 CDMVDD 143 (396)
T ss_pred cCCcch
Confidence 999853
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.69 E-value=1.4e-07 Score=104.61 Aligned_cols=138 Identities=14% Similarity=0.262 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+.-.|+|||..+||||||.|+|+... |..++.. .+.-.+. ......|+.....
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~------g~i~~~g-~v~~~~~------------~~~~~~D~~~~E~-------- 61 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFG------GAIQEAG-TVKGRKS------------GRHATSDWMEMEK-------- 61 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC------CCccccc-eeecccc------------CccccCCCcHHHH--------
Confidence 57799999999999999999997321 1112211 1100000 0001122222111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
. .+..++.....+. . +...+.+|||||..+. ...+..+++.+|++|+|++. ..+...+ ..
T Consensus 62 ~--rgiSi~~~~~~~~--~-~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa-~~gv~~~-t~ 121 (526)
T PRK00741 62 Q--RGISVTSSVMQFP--Y-RDCLINLLDTPGHEDF-------------SEDTYRTLTAVDSALMVIDA-AKGVEPQ-TR 121 (526)
T ss_pred h--hCCceeeeeEEEE--E-CCEEEEEEECCCchhh-------------HHHHHHHHHHCCEEEEEEec-CCCCCHH-HH
Confidence 1 1122333333332 2 3457999999997653 33466788899999887654 4444333 23
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+.+.....+.|+++++||+|+...
T Consensus 122 ~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 122 KLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HHHHHHHhcCCCEEEEEECCccccc
Confidence 4555556678999999999998653
No 251
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.69 E-value=5.1e-08 Score=84.36 Aligned_cols=138 Identities=21% Similarity=0.253 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|++||..++||+||.++|-|.+.+++-+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykKTQA------------------------------------------------ 33 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKKTQA------------------------------------------------ 33 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcccce------------------------------------------------
Confidence 47999999999999999999999876554321
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKI 194 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l 194 (609)
++..++. .|||||-.-.. ..+..-.....++++.|++ |.+++...+.-.
T Consensus 34 ------------ve~~d~~-----~IDTPGEy~~~---------~~~Y~aL~tt~~dadvi~~-v~~and~~s~f~---- 82 (148)
T COG4917 34 ------------VEFNDKG-----DIDTPGEYFEH---------PRWYHALITTLQDADVIIY-VHAANDPESRFP---- 82 (148)
T ss_pred ------------eeccCcc-----ccCCchhhhhh---------hHHHHHHHHHhhccceeee-eecccCccccCC----
Confidence 1122222 59999955321 1112223344568888876 456665433322
Q ss_pred HHHhCCCCCceEEEecccCcCCCCC-c-HHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 195 SREVDPRGDRTFGVLTKIDLMDKGT-D-AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 195 ~~~~d~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
....++..+++|||+||.|+.+... . ....+. ..-....|.+.....++++++++.+
T Consensus 83 p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~---eaGa~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 83 PGFLDIGVKKVIGVVTKADLAEDADISLVKRWLR---EAGAEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred cccccccccceEEEEecccccchHhHHHHHHHHH---HcCCcceEEEeccCcccHHHHHHHH
Confidence 1234555677999999999985321 1 122222 1113445555555555665555443
No 252
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.68 E-value=4.8e-08 Score=96.94 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=44.2
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEec
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLT 210 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~Vlt 210 (609)
+....++++||||.. .. +...++.+|++++++ ++..+...++. .+...+...|.+ +|+|+|
T Consensus 80 ~~~~~i~~vDtPg~~---------------~~-~l~~ak~aDvVllvi-Da~~~~~~~~~-~i~~~l~~~g~p~vi~Vvn 141 (225)
T cd01882 80 GKKRRLTFIECPNDI---------------NA-MIDIAKVADLVLLLI-DASFGFEMETF-EFLNILQVHGFPRVMGVLT 141 (225)
T ss_pred cCCceEEEEeCCchH---------------HH-HHHHHHhcCEEEEEE-ecCcCCCHHHH-HHHHHHHHcCCCeEEEEEe
Confidence 355688999999842 11 223457789887765 55555544443 355555555666 466999
Q ss_pred ccCcCCCC
Q 007296 211 KIDLMDKG 218 (609)
Q Consensus 211 K~D~~~~~ 218 (609)
|+|++++.
T Consensus 142 K~D~~~~~ 149 (225)
T cd01882 142 HLDLFKKN 149 (225)
T ss_pred ccccCCcH
Confidence 99998543
No 253
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.68 E-value=9.8e-08 Score=110.23 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=49.2
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecc
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 211 (609)
.+...+.||||||..+. ...+..+++.+|++|+++. +..++..+. ..+.+.....+.+.++|+||
T Consensus 83 ~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVvd-a~~g~~~~t-~~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVC-AVEGVMPQT-ETVLRQALKENVKPVLFINK 147 (720)
T ss_pred CCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEEe-cCCCCCccH-HHHHHHHHHcCCCEEEEEEC
Confidence 34467899999998764 2346788899999988764 444443333 23555555556788999999
Q ss_pred cCcCC
Q 007296 212 IDLMD 216 (609)
Q Consensus 212 ~D~~~ 216 (609)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99864
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=98.67 E-value=3.9e-08 Score=105.85 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=44.7
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEecc
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTF-GVLTK 211 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK 211 (609)
+...++|+||||..+ .+.++ ...+..+|+++++|+ +..+...++ ..++..+...+.|.+ +|+||
T Consensus 73 ~~~~i~~iDtPG~~~------------f~~~~-~~~~~~aD~~llVVD-a~~g~~~qt-~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 73 EKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVS-AADGPMPQT-REHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCeEEEEEECCCHHH------------HHHHH-HhhhccCCEEEEEEE-CCCCCchHH-HHHHHHHHHcCCCEEEEEEee
Confidence 445789999999642 22333 344678999988654 544444333 234455555567875 68999
Q ss_pred cCcCC
Q 007296 212 IDLMD 216 (609)
Q Consensus 212 ~D~~~ 216 (609)
+|+++
T Consensus 138 ~D~~~ 142 (396)
T PRK00049 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99985
No 255
>PRK12736 elongation factor Tu; Reviewed
Probab=98.66 E-value=5.9e-08 Score=104.42 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=44.3
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecc
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLTK 211 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK 211 (609)
+...++||||||..+ .+.++ ..-+..+|+++|+| ++..++..+. ...+..+...|.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~-~~~~~~~d~~llVv-d~~~g~~~~t-~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVV-AATDGPMPQT-REHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEEEE-ECCCCCchhH-HHHHHHHHHcCCCEEEEEEEe
Confidence 345789999999532 22333 33356789998865 4555444433 2344445555777 5788999
Q ss_pred cCcCCC
Q 007296 212 IDLMDK 217 (609)
Q Consensus 212 ~D~~~~ 217 (609)
+|+.+.
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999753
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.66 E-value=6.8e-08 Score=91.45 Aligned_cols=119 Identities=19% Similarity=0.338 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-|.|+++|+.+||||+|+..|+...+. .++|.......
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~------------------------------------- 40 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIA------------------------------------- 40 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEE-------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCce-------------------------------------
Confidence 4689999999999999999999977542 12222211100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHH--hhcCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRS--YIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~--yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
..+..+....+.+||+||..+.. ..+... |+..+.+||++|+++...-...+
T Consensus 41 --------------~~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~ 94 (181)
T PF09439_consen 41 --------------YNVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELRD 94 (181)
T ss_dssp --------------CCGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHHH
T ss_pred --------------EEeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHHH
Confidence 00112334578999999987642 223333 68889999998876532111111
Q ss_pred HHH------HHHHhCCCCCceEEEecccCcCCCC
Q 007296 191 AIK------ISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 191 ~l~------l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+.+ ......+.+.|++++.||.|+....
T Consensus 95 ~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 95 VAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred HHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 111 1123446789999999999997643
No 257
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=8e-08 Score=90.83 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 31 WDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
+..+-.|+++|++++|||=||.+.+.-.|-+ -++-++-+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~-----~SksTIGve----------------------------------- 50 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSL-----ESKSTIGVE----------------------------------- 50 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCc-----ccccceeEE-----------------------------------
Confidence 3468899999999999999999999888832 222221111
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC--cccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ--DLAT 188 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~--d~~~ 188 (609)
.....+.|.+ ......||||.|..+. +.++..|.+.+...+|+.+-... --..
T Consensus 51 -----------f~t~t~~vd~-k~vkaqIWDTAGQERy-------------rAitSaYYrgAvGAllVYDITr~~Tfenv 105 (222)
T KOG0087|consen 51 -----------FATRTVNVDG-KTVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITRRQTFENV 105 (222)
T ss_pred -----------EEeeceeecC-cEEEEeeecccchhhh-------------ccccchhhcccceeEEEEechhHHHHHHH
Confidence 1111111211 2346679999998775 56788999999998887543221 1234
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCC
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
..|++-++.......++++|.||+|+..
T Consensus 106 ~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 106 ERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 5677777776666799999999999976
No 258
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.66 E-value=7.1e-08 Score=100.30 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-..|.|.|.+|||||||+++|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998764
No 259
>PLN03126 Elongation factor Tu; Provisional
Probab=98.65 E-value=7.1e-08 Score=105.55 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.-.|+++|..++|||||+++|++..- .+..+.+... .+.|... .++.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~~~--------------------~~~D~~~--------~Er~ 127 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPKKY--------------------DEIDAAP--------EERA 127 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhh-----hhcccccccc--------------------ccccCCh--------hHHh
Confidence 44689999999999999999997532 1222221000 0011110 0111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+++-+.....+. .+...++||||||..+ .+.++ ..-+..+|+.+|+| ++..+...+. .+
T Consensus 128 ----rGiTi~~~~~~~~-~~~~~i~liDtPGh~~------------f~~~~-~~g~~~aD~ailVV-da~~G~~~qt-~e 187 (478)
T PLN03126 128 ----RGITINTATVEYE-TENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVV-SGADGPMPQT-KE 187 (478)
T ss_pred ----CCeeEEEEEEEEe-cCCcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEEEE-ECCCCCcHHH-HH
Confidence 2233333222222 2445889999999644 22333 44456899998865 5555544443 23
Q ss_pred HHHHhCCCCCc-eEEEecccCcCCC
Q 007296 194 ISREVDPRGDR-TFGVLTKIDLMDK 217 (609)
Q Consensus 194 l~~~~d~~~~r-ti~VltK~D~~~~ 217 (609)
.+..+...|.+ .|+|+||+|+.+.
T Consensus 188 ~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 188 HILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHcCCCeEEEEEecccccCH
Confidence 44445555777 7789999999863
No 260
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.63 E-value=3.6e-07 Score=82.85 Aligned_cols=157 Identities=15% Similarity=0.230 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
=-+|.++|--||||||+++.+.|.+. +.--+|
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt--------------------------------------------- 47 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT---DTISPT--------------------------------------------- 47 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc---cccCCc---------------------------------------------
Confidence 35899999999999999999999763 111111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+|--+. +++ ....|+++|.-|... +++..++|....|++|+||+++. ...-++...
T Consensus 48 ----~gf~Ikt--l~~---~~~~L~iwDvGGq~~-------------lr~~W~nYfestdglIwvvDssD-~~r~~e~~~ 104 (185)
T KOG0073|consen 48 ----LGFQIKT--LEY---KGYTLNIWDVGGQKT-------------LRSYWKNYFESTDGLIWVVDSSD-RMRMQECKQ 104 (185)
T ss_pred ----cceeeEE--EEe---cceEEEEEEcCCcch-------------hHHHHHHhhhccCeEEEEEECch-HHHHHHHHH
Confidence 1111111 111 235789999999654 38889999999999999887643 333333332
Q ss_pred ----HHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhccc--cccCCceeeEeeCChhhhcccccHHHHHHHHH
Q 007296 194 ----ISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKS--YKLRYPWIGVVNRSQADINKSVDMIAARRREH 261 (609)
Q Consensus 194 ----l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~ 261 (609)
+..+-.-.|.+.+++.||.|+...-. +....+.-.. .......+.+...+++++.++++.......++
T Consensus 105 ~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 105 ELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 22233345789999999999973221 1111211111 22234556667778888888887776666553
No 261
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.63 E-value=1.2e-07 Score=105.20 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+...|+|||..+||||||+|+|+... |...+.+. +. .. + .......|+...+.
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~------g~i~~~g~-v~---~~-g--------~~~~t~~D~~~~E~-------- 62 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYG------GAIQTAGA-VK---GR-G--------SQRHAKSDWMEMEK-------- 62 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhC------CCccccce-ec---cc-c--------ccccccCCCCHHHH--------
Confidence 57899999999999999999986321 11111110 00 00 0 00001122221111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..++|-..-...+. .+...+.||||||..+. ...+..++..+|++|+++++. .++..+. .
T Consensus 63 ----~rgisi~~~~~~~~-~~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~-~gv~~~t-~ 122 (527)
T TIGR00503 63 ----QRGISITTSVMQFP-YRDCLVNLLDTPGHEDF-------------SEDTYRTLTAVDNCLMVIDAA-KGVETRT-R 122 (527)
T ss_pred ----hcCCcEEEEEEEEe-eCCeEEEEEECCChhhH-------------HHHHHHHHHhCCEEEEEEECC-CCCCHHH-H
Confidence 12233222122222 24468899999997542 334567888999998876554 3333322 2
Q ss_pred HHHHHhCCCCCceEEEecccCcCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
.+.+.....+.|+++++||+|+..
T Consensus 123 ~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 123 KLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHHhcCCCEEEEEECccccC
Confidence 244444446789999999999864
No 262
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.3e-07 Score=83.04 Aligned_cols=152 Identities=13% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 31 WDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
|.-+-.-++||+.++|||.||..++..+| ...||.++-
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkf-------madcphtig----------------------------------- 45 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIG----------------------------------- 45 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccc-----------------------------------
Confidence 44567889999999999999999999887 345663332
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec--CCCcccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP--ANQDLAT 188 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~--a~~d~~~ 188 (609)
+....-.+++.+. ...|.+|||.|..+. +.++++|.+.+-..+++.+- .+.....
T Consensus 46 ---------vefgtriievsgq-kiklqiwdtagqerf-------------ravtrsyyrgaagalmvyditrrstynhl 102 (215)
T KOG0097|consen 46 ---------VEFGTRIIEVSGQ-KIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHL 102 (215)
T ss_pred ---------eecceeEEEecCc-EEEEEEeecccHHHH-------------HHHHHHHhccccceeEEEEehhhhhhhhH
Confidence 1111112334333 347889999996653 88899999998776555322 2223344
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhh
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADI 247 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i 247 (609)
+.|+.-++.+-.-..-++++.||.|+-+...-..+..+......++-|...+..+++++
T Consensus 103 sswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nv 161 (215)
T KOG0097|consen 103 SSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNV 161 (215)
T ss_pred HHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcH
Confidence 67777777776555667888999999765532222221112223344555555555444
No 263
>PRK13351 elongation factor G; Reviewed
Probab=98.60 E-value=1.5e-07 Score=108.63 Aligned_cols=134 Identities=14% Similarity=0.213 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
....|+|+|..++|||||+++|+...- ...+ ...+. .+....|+.... +
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g------~~~~-~~~v~----------------~~~~~~d~~~~e--------~ 55 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTG------KIHK-MGEVE----------------DGTTVTDWMPQE--------Q 55 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcC------Cccc-ccccc----------------CCcccCCCCHHH--------H
Confidence 578999999999999999999985321 1000 00000 001111221111 1
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..| .++......+.. +...+.||||||..+. ...+..+++.+|++|++++. ..+...+. .
T Consensus 56 ~r~--~ti~~~~~~~~~---~~~~i~liDtPG~~df-------------~~~~~~~l~~aD~~ilVvd~-~~~~~~~~-~ 115 (687)
T PRK13351 56 ERG--ITIESAATSCDW---DNHRINLIDTPGHIDF-------------TGEVERSLRVLDGAVVVFDA-VTGVQPQT-E 115 (687)
T ss_pred hcC--CCcccceEEEEE---CCEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEEeC-CCCCCHHH-H
Confidence 111 122223333332 3468999999997653 45677889999999887654 43333222 2
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+.+.+...+.|.++|+||+|+...
T Consensus 116 ~~~~~~~~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 116 TVWRQADRYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHhcCCCEEEEEECCCCCCC
Confidence 3455566668999999999998753
No 264
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.7e-07 Score=83.58 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=86.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 31 WDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
|.-|-.++|+|+.++|||.||...+...| --++. |
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kf-kDdss------------------------H-------------------- 40 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKF-KDDSS------------------------H-------------------- 40 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhh-ccccc------------------------c--------------------
Confidence 44688999999999999999999998776 11100 0
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LAT 188 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~ 188 (609)
..+..|....|.+. .....|.+|||.|..+. ++.+++|.+.+-..+||.+..+.| .+.
T Consensus 41 ----TiGveFgSrIinVG---gK~vKLQIWDTAGQErF-------------RSVtRsYYRGAAGAlLVYD~TsrdsfnaL 100 (214)
T KOG0086|consen 41 ----TIGVEFGSRIVNVG---GKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRDSFNAL 100 (214)
T ss_pred ----eeeeeecceeeeec---CcEEEEEEeecccHHHH-------------HHHHHHHhccccceEEEEeccchhhHHHH
Confidence 01122333333332 24467899999997654 889999999988888876555544 333
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
..|+.-++.+.+...-+|++.||-|+-+..
T Consensus 101 tnWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 101 TNWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred HHHHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 567777888888878888889999986544
No 265
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.58 E-value=2e-07 Score=100.71 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
--.|+|+|..++|||||+++|+|.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCe
Confidence 457999999999999999999875
No 266
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.58 E-value=2.8e-07 Score=106.76 Aligned_cols=133 Identities=14% Similarity=0.244 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..|+|+|..++|||||+++|+... |..++.- ..+..+.|+...+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~-------------------~g~~~~~D~~~~E~-------- 65 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL-------------------AGEQLALDFDEEEQ-------- 65 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh-------------------cCcceecCccHHHH--------
Confidence 57899999999999999999997542 2222210 00011222222111
Q ss_pred hcCCCCcccCCceEEEEe-cCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIF-SPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~-~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
..| -++....+.+... ..+...++|+||||..+. ...+...++.+|++|++|+ +..+...+..
T Consensus 66 ~rg--iTi~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVvd-a~~g~~~~t~ 129 (731)
T PRK07560 66 ARG--ITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVD-AVEGVMPQTE 129 (731)
T ss_pred Hhh--hhhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEEE-CCCCCCccHH
Confidence 111 1122223333221 123346899999998764 3346677889999988664 4555444432
Q ss_pred HHHHHHhCCCCCceEEEecccCcC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
.+.+.+...+.+.|+++||+|+.
T Consensus 130 -~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 130 -TVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred -HHHHHHHHcCCCeEEEEECchhh
Confidence 34554444567889999999986
No 267
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=4.3e-07 Score=97.39 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=96.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-|-|+|+|.--.||||||-+|=+..+-+...|--|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGIT-------------------------------------------- 39 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGIT-------------------------------------------- 39 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCcee--------------------------------------------
Confidence 579999999999999999999988776444444333
Q ss_pred hcCCCCcccCCceEEEEecC--CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSP--NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
.+.=...+..+ +.+.++|+||||...+ ..|=.+=.+=+|++||+| +++.++..|.
T Consensus 40 ---------QhIGA~~v~~~~~~~~~itFiDTPGHeAF-------------t~mRaRGa~vtDIaILVV-a~dDGv~pQT 96 (509)
T COG0532 40 ---------QHIGAYQVPLDVIKIPGITFIDTPGHEAF-------------TAMRARGASVTDIAILVV-AADDGVMPQT 96 (509)
T ss_pred ---------eEeeeEEEEeccCCCceEEEEcCCcHHHH-------------HHHHhcCCccccEEEEEE-EccCCcchhH
Confidence 21111223333 4689999999996553 222222224478888865 6666665554
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcH--HHHHhcccccc----CCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDA--VDILEGKSYKL----RYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~--~~~l~~~~~~l----~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.. -...+...+.|+|+++||+|+.+...+. .+..+....+- ...++++++.+++|+++++.....
T Consensus 97 iE-AI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 97 IE-AINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred HH-HHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 32 3344445679999999999998554321 12222111111 133566677777888877765543
No 268
>PTZ00416 elongation factor 2; Provisional
Probab=98.54 E-value=3e-07 Score=107.61 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=49.1
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
.++|+||||..+. ..-+...++.+|++|+|| ++..++..+.. .+.+.+...+.|.|+++||+|+.
T Consensus 93 ~i~liDtPG~~~f-------------~~~~~~al~~~D~ailVv-da~~g~~~~t~-~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 93 LINLIDSPGHVDF-------------SSEVTAALRVTDGALVVV-DCVEGVCVQTE-TVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEEEEcCCCHHhH-------------HHHHHHHHhcCCeEEEEE-ECCCCcCccHH-HHHHHHHHcCCCEEEEEEChhhh
Confidence 5899999998653 222466678999998865 56666665554 46777777788999999999996
No 269
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.53 E-value=2.8e-07 Score=86.07 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLP 61 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP 61 (609)
..|+++|.+|+|||||+|+|.|....+
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~ 129 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCK 129 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCcee
Confidence 468899999999999999999987633
No 270
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.52 E-value=4.1e-07 Score=98.98 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=40.2
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHHHHHHHHhCCCCCceEEEeccc
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
.++||||||..+ .+++|+ .-+..+|.++|+|. ++.. ... .+.+.++..+.- .+.|+|+||+
T Consensus 118 ~i~~IDtPGH~~------------fi~~m~-~g~~~~D~alLVVd-a~~g~~~~qT~ehl~i~~~lgi--~~iIVvlNKi 181 (460)
T PTZ00327 118 HVSFVDCPGHDI------------LMATML-NGAAVMDAALLLIA-ANESCPQPQTSEHLAAVEIMKL--KHIIILQNKI 181 (460)
T ss_pred eEeeeeCCCHHH------------HHHHHH-HHHhhCCEEEEEEE-CCCCccchhhHHHHHHHHHcCC--CcEEEEEecc
Confidence 689999999432 234443 33568899888664 4432 222 233333333321 4689999999
Q ss_pred CcCCC
Q 007296 213 DLMDK 217 (609)
Q Consensus 213 D~~~~ 217 (609)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99853
No 271
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=94.17 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=101.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 31 WDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
..+.|.|+|||..|||||||+++|++..+.|.+.-..|--||.=.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~----------------------------------- 219 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS----------------------------------- 219 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhh-----------------------------------
Confidence 357999999999999999999999999998888766664442100
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch-
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 189 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~- 189 (609)
..-|......+.||-|++.. -|..+...++. +..-+..+|.|+.+++.++.++..+
T Consensus 220 ------------------a~Lpsg~~vlltDTvGFisd----LP~~LvaAF~A-TLeeVaeadlllHvvDiShP~ae~q~ 276 (410)
T KOG0410|consen 220 ------------------AHLPSGNFVLLTDTVGFISD----LPIQLVAAFQA-TLEEVAEADLLLHVVDISHPNAEEQR 276 (410)
T ss_pred ------------------ccCCCCcEEEEeechhhhhh----CcHHHHHHHHH-HHHHHhhcceEEEEeecCCccHHHHH
Confidence 12234446779999999873 34445555544 3455778999988776655555444
Q ss_pred -HHHHHHHHhCCC----CCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 190 -DAIKISREVDPR----GDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 190 -~~l~l~~~~d~~----~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..+...+.++-. ..++|=|=||+|..+... ..-+.+-.++++..+++.++++....
T Consensus 277 e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~----------e~E~n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 277 ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV----------EEEKNLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC----------ccccCCccccccccCccHHHHHHHHH
Confidence 345556666543 245666667777643221 12234456677777777666554433
No 272
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.52 E-value=3.4e-07 Score=93.57 Aligned_cols=138 Identities=25% Similarity=0.379 Sum_probs=73.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
.|.|||..|+|||||+|+|++..+.+......+... ...
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~-----------------------------------------~~~ 44 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA-----------------------------------------SIS 44 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc-----------------------------------------ccc
Confidence 589999999999999999999887544311110000 000
Q ss_pred CCCcccCCceEEEEecC-CCCCcEEEeCCCCccccCC-CCccchHHHHHHHHHHhhc-------------CCceEEEEEe
Q 007296 116 RSKAISTVPIHLSIFSP-NVVNLTLIDLPGLTKVAVD-GQPESIVQDIENMVRSYIE-------------KPNCIILAIS 180 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~-~~~~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~-------------~~~~iIL~v~ 180 (609)
.+..+...... +... -..+|++|||||+...-.. .....+...+.+--..|+. +.||++.++.
T Consensus 45 ~~~~i~~~~~~--l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~ 122 (281)
T PF00735_consen 45 RTLEIEERTVE--LEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIP 122 (281)
T ss_dssp SCEEEEEEEEE--EEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-
T ss_pred cccceeeEEEE--eccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEc
Confidence 00111111111 1111 1237999999998653211 1112233444444444443 1357766666
Q ss_pred cCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 181 PANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 181 ~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
|....+...|. ...+++... .++|=||.|+|.+...
T Consensus 123 pt~~~L~~~Di-~~mk~Ls~~-vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 123 PTGHGLKPLDI-EFMKRLSKR-VNVIPVIAKADTLTPE 158 (281)
T ss_dssp TTSSSS-HHHH-HHHHHHTTT-SEEEEEESTGGGS-HH
T ss_pred CCCccchHHHH-HHHHHhccc-ccEEeEEecccccCHH
Confidence 66666665554 577777765 7899999999998654
No 273
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.48 E-value=4.3e-07 Score=86.07 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPR 62 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~ 62 (609)
..+|+|+|.+|+|||||+|+|+|....++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~ 145 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV 145 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee
Confidence 46899999999999999999999876443
No 274
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.47 E-value=5e-07 Score=106.00 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=48.5
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
..++||||||..+. ..-+...++.+|+.|+|| ++..++..+.. .+.+.+...+.++|+++||+|+
T Consensus 98 ~~inliDtPGh~dF-------------~~e~~~al~~~D~ailVv-da~~Gv~~~t~-~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 98 YLINLIDSPGHVDF-------------SSEVTAALRITDGALVVV-DCIEGVCVQTE-TVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred eEEEEECCCCHHHH-------------HHHHHHHHhhcCEEEEEE-ECCCCCcccHH-HHHHHHHHCCCCEEEEEECCcc
Confidence 35789999997654 222456678899998866 45566655543 4667777778999999999999
Q ss_pred C
Q 007296 215 M 215 (609)
Q Consensus 215 ~ 215 (609)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 275
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.44 E-value=5.4e-07 Score=86.92 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=23.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
.++++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 6899999999999999999998764
No 276
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=7.2e-08 Score=86.47 Aligned_cols=161 Identities=15% Similarity=0.180 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-|.+..++|+.++||+|+|-..+...|- |.+.+++-
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~-------~qFIsTVG------------------------------------- 43 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFN-------TQFISTVG------------------------------------- 43 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCccc-------ceeEEEee-------------------------------------
Confidence 4667888999999999999999987761 11211111
Q ss_pred hcCCCCcccCCceEEEEecCC------CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC--
Q 007296 113 ETGRSKAISTVPIHLSIFSPN------VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ-- 184 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~------~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~-- 184 (609)
..|-++.+...-.+|+ ...|.+|||+|..+. ++++..|.+++=..+|..+-.+.
T Consensus 44 -----IDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERF-------------RSLTTAFfRDAMGFlLiFDlT~eqS 105 (219)
T KOG0081|consen 44 -----IDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERF-------------RSLTTAFFRDAMGFLLIFDLTSEQS 105 (219)
T ss_pred -----cccccceEEEeccCCCCCCcceEEEEeeeccccHHHH-------------HHHHHHHHHhhccceEEEeccchHH
Confidence 1111122222222222 236889999997654 88999999999888776543332
Q ss_pred cccchHHHHHHHHhC-CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 185 DLATSDAIKISREVD-PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 185 d~~~~~~l~l~~~~d-~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
-+....|+.-.+... -...-++++.||+|+.+...-..+.......+.+++|+..++-++.++++..+.+-
T Consensus 106 FLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Ll 177 (219)
T KOG0081|consen 106 FLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLL 177 (219)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHH
Confidence 122223332222211 12244788899999987653222222223456678999998887776665444433
No 277
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.42 E-value=2.9e-07 Score=85.75 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccccc-cccccc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRP 71 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p 71 (609)
.-++|+++|.+|+||||++|+|+|....+.+.+ .+|+.+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 568999999999999999999999765454433 344444
No 278
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=7.3e-07 Score=82.94 Aligned_cols=152 Identities=16% Similarity=0.253 Sum_probs=95.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
=-+|+++|=-||||||+|..|--.++ +|..|
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~-------vttvP------------------------------------------ 47 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTVP------------------------------------------ 47 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCc-------ccCCC------------------------------------------
Confidence 45899999999999999998865553 33355
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
+.||.-..+.+ ....+++||.-|..+. +.+.+.|.++.+.+|+||++...+--......
T Consensus 48 ---TiGfnVE~v~y-----kn~~f~vWDvGGq~k~-------------R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~e 106 (181)
T KOG0070|consen 48 ---TIGFNVETVEY-----KNISFTVWDVGGQEKL-------------RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEE 106 (181)
T ss_pred ---ccccceeEEEE-----cceEEEEEecCCCccc-------------ccchhhhccCCcEEEEEEeCCcHHHHHHHHHH
Confidence 22333222222 2568999999997653 67799999999999998876554321111112
Q ss_pred ---HHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhccccccCCceee--EeeCChhhhcccccHHHH
Q 007296 194 ---ISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKLRYPWIG--VVNRSQADINKSVDMIAA 256 (609)
Q Consensus 194 ---l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~--v~~~s~~~i~~~~~~~~~ 256 (609)
+...-+..+.++++..||.|+...-+ +..+.+.-..+.- ..|+. ..+.+++++.++++....
T Consensus 107 L~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 107 LHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHH
Confidence 33333345789999999999875543 2233332222222 45553 445667777776665543
No 279
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.39 E-value=1.3e-06 Score=84.66 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|..++|||+|.-...+..|... . -|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y-----~p----------------------------------------- 34 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVED-Y-----DP----------------------------------------- 34 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccc-c-----CC-----------------------------------------
Confidence 357899999999999999999998877222 0 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+...+-.+++. +. .....|.|+||+|.... ..|-..|+...++.++|..-.+ .-+-+++.
T Consensus 35 ---tied~y~k~~~--v~-~~~~~l~ilDt~g~~~~-------------~~~~~~~~~~~~gF~lVysitd-~~SF~~~~ 94 (196)
T KOG0395|consen 35 ---TIEDSYRKELT--VD-GEVCMLEILDTAGQEEF-------------SAMRDLYIRNGDGFLLVYSITD-RSSFEEAK 94 (196)
T ss_pred ---CccccceEEEE--EC-CEEEEEEEEcCCCcccC-------------hHHHHHhhccCcEEEEEEECCC-HHHHHHHH
Confidence 00000011111 22 23447789999994433 4566789999999987653322 11112222
Q ss_pred H----HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 193 K----ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 193 ~----l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
. +.+.-+....|+++|.||+|+........+-.+........+|+.++.....++++.+.
T Consensus 95 ~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 95 QLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred HHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHH
Confidence 2 32223444469999999999986433211111111344556788888766555555443
No 280
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=5.9e-07 Score=82.30 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..++++|.+|+|||||+|+|.|..+
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3899999999999999999999875
No 281
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.37 E-value=1.6e-06 Score=94.54 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=43.3
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-----chHHHHHHHHhCCCCC-ce
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPRGD-RT 205 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-----~~~~l~l~~~~d~~~~-rt 205 (609)
.....++|+||||..+. ...+..++..+|+.||||......+. .....+.+..+...|. +.
T Consensus 82 ~~~~~i~liDtPGh~df-------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~i 148 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDF-------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQM 148 (447)
T ss_pred CCCEEEEEEECCCHHHH-------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcE
Confidence 34457999999996443 33345677899999887654432121 0111223333334456 46
Q ss_pred EEEecccCcC
Q 007296 206 FGVLTKIDLM 215 (609)
Q Consensus 206 i~VltK~D~~ 215 (609)
|+++||+|+.
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8899999986
No 282
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=4.3e-06 Score=89.22 Aligned_cols=115 Identities=16% Similarity=0.263 Sum_probs=76.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-|.|.|+|.--.||||||.+|-+..+-....|
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~G----------------------------------------------- 184 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAG----------------------------------------------- 184 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcC-----------------------------------------------
Confidence 579999999999999999999988765222222
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
|++...=...+.-|+...+||.||||...+ ..|=.+-..-.|.++|| +++..+.-.|..
T Consensus 185 ------GITQhIGAF~V~~p~G~~iTFLDTPGHaAF-------------~aMRaRGA~vtDIvVLV-VAadDGVmpQT~- 243 (683)
T KOG1145|consen 185 ------GITQHIGAFTVTLPSGKSITFLDTPGHAAF-------------SAMRARGANVTDIVVLV-VAADDGVMPQTL- 243 (683)
T ss_pred ------CccceeceEEEecCCCCEEEEecCCcHHHH-------------HHHHhccCccccEEEEE-EEccCCccHhHH-
Confidence 222222223355666789999999996553 33433334456767665 566666555543
Q ss_pred HHHHHhCCCCCceEEEecccCcC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~ 215 (609)
+.++.....+.|+|+.+||+|.-
T Consensus 244 EaIkhAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 244 EAIKHAKSANVPIVVAINKIDKP 266 (683)
T ss_pred HHHHHHHhcCCCEEEEEeccCCC
Confidence 34444555678999999999965
No 283
>PRK12740 elongation factor G; Reviewed
Probab=98.30 E-value=2.6e-06 Score=98.15 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=48.9
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...++||||||..+. ...+..++..+|++++++.+ +.+...+ ...+.+.+...+.|.++|+||+|
T Consensus 59 ~~~i~liDtPG~~~~-------------~~~~~~~l~~aD~vllvvd~-~~~~~~~-~~~~~~~~~~~~~p~iiv~NK~D 123 (668)
T PRK12740 59 GHKINLIDTPGHVDF-------------TGEVERALRVLDGAVVVVCA-VGGVEPQ-TETVWRQAEKYGVPRIIFVNKMD 123 (668)
T ss_pred CEEEEEEECCCcHHH-------------HHHHHHHHHHhCeEEEEEeC-CCCcCHH-HHHHHHHHHHcCCCEEEEEECCC
Confidence 468999999997542 34466788899999887654 4443333 23355555566889999999999
Q ss_pred cCCC
Q 007296 214 LMDK 217 (609)
Q Consensus 214 ~~~~ 217 (609)
+...
T Consensus 124 ~~~~ 127 (668)
T PRK12740 124 RAGA 127 (668)
T ss_pred CCCC
Confidence 8754
No 284
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.29 E-value=2.4e-06 Score=93.23 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=41.4
Q ss_pred CCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc------chHHHHHHHHhCCCCCc-
Q 007296 132 PNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA------TSDAIKISREVDPRGDR- 204 (609)
Q Consensus 132 ~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~------~~~~l~l~~~~d~~~~r- 204 (609)
.+...++|+||||..+. +.++ ..-+..+|++||+|+ +..+.. .....+.+..+...|.|
T Consensus 82 ~~~~~i~lIDtPGh~~f------------~~~~-~~g~~~aD~ailVVd-a~~G~~e~~~~~~~qT~eh~~~~~~~gi~~ 147 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDF------------IKNM-ITGTSQADVAILVVA-STAGEFEAGISKDGQTREHALLAFTLGVKQ 147 (446)
T ss_pred cCCeEEEEEECCChHHH------------HHHH-HHhhhhcCEEEEEEE-cCCCceecccCCCccHHHHHHHHHHcCCCe
Confidence 34568899999995432 2333 344678999988665 444431 11112233334445655
Q ss_pred eEEEecccCc
Q 007296 205 TFGVLTKIDL 214 (609)
Q Consensus 205 ti~VltK~D~ 214 (609)
.|+++||+|.
T Consensus 148 iiv~vNKmD~ 157 (446)
T PTZ00141 148 MIVCINKMDD 157 (446)
T ss_pred EEEEEEcccc
Confidence 6799999994
No 285
>PTZ00099 rab6; Provisional
Probab=98.28 E-value=1.6e-06 Score=82.66 Aligned_cols=117 Identities=18% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hHHHHHHHHhCCCCCceEEEecc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~~l~l~~~~d~~~~rti~VltK 211 (609)
...+.||||||..+. ..+...|++++|++|+|++..+.. +.. ..|+..+......+.++|+|.||
T Consensus 28 ~v~l~iwDt~G~e~~-------------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQERF-------------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHHh-------------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 357899999997653 556778999999998877544321 111 23443333333345788999999
Q ss_pred cCcCCCCC-cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHHHHh
Q 007296 212 IDLMDKGT-DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREHEYF 264 (609)
Q Consensus 212 ~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff 264 (609)
+|+.+... ...+.. ......+..|+.+++.++.++++.+..+.....+.+-+
T Consensus 95 ~DL~~~~~v~~~e~~-~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 95 TDLGDLRKVTYEEGM-QKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cccccccCCCHHHHH-HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 99964321 111111 11222345678889999999999888877766665443
No 286
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.25 E-value=3.3e-06 Score=90.95 Aligned_cols=121 Identities=20% Similarity=0.260 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.--+|++||+.++|||||+=+|++.+| |-. +.-|.|-.+.
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef-~~~--VP~rl~~i~I------------------------------------- 47 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEF-VDA--VPRRLPRILI------------------------------------- 47 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhc-ccc--ccccCCcccc-------------------------------------
Confidence 345999999999999999999999986 221 2222221000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEE--ec-CCCcccch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAI--SP-ANQDLATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v--~~-a~~d~~~~ 189 (609)
+ . =..|+..+.++|||+--.. + +..+.+-++++|.|.++- +. .+.|--..
T Consensus 48 ---P-a----------dvtPe~vpt~ivD~ss~~~--------~-----~~~l~~EirkA~vi~lvyavd~~~T~D~ist 100 (625)
T KOG1707|consen 48 ---P-A----------DVTPENVPTSIVDTSSDSD--------D-----RLCLRKEIRKADVICLVYAVDDESTVDRIST 100 (625)
T ss_pred ---C-C----------ccCcCcCceEEEecccccc--------h-----hHHHHHHHhhcCEEEEEEecCChHHhhhhhh
Confidence 0 0 1235556789999973221 1 444567789999887653 21 33456667
Q ss_pred HHHHHHHHhC--CCCCceEEEecccCcCCCCCc
Q 007296 190 DAIKISREVD--PRGDRTFGVLTKIDLMDKGTD 220 (609)
Q Consensus 190 ~~l~l~~~~d--~~~~rti~VltK~D~~~~~~~ 220 (609)
.|+-+.++.- ....|+|+|.||+|..+..+.
T Consensus 101 ~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 101 KWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred hhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 7888888766 235899999999999876543
No 287
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.25 E-value=1.6e-06 Score=90.45 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=30.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEE
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQ 75 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~ 75 (609)
-++.|||-||+|||||||+|.|... ..+.++|.+++
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~PG~Tk 168 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRPGTTK 168 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCCceec
Confidence 4699999999999999999999986 56777885554
No 288
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.24 E-value=4e-06 Score=79.44 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..+.++++|.+|+|||||+|+|.+..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999999876
No 289
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.22 E-value=2.5e-05 Score=80.99 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=55.4
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
..++.||||||..... ...+..+|+++++..+... .+...+...+ .+.+.++|+||+|
T Consensus 126 g~D~viidT~G~~~~e----------------~~i~~~aD~i~vv~~~~~~----~el~~~~~~l--~~~~~ivv~NK~D 183 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE----------------VDIANMADTFVVVTIPGTG----DDLQGIKAGL--MEIADIYVVNKAD 183 (300)
T ss_pred CCCEEEEeCCCCchhh----------------hHHHHhhceEEEEecCCcc----HHHHHHHHHH--hhhccEEEEEccc
Confidence 4689999999965321 1235567877765433221 1111122222 2466799999999
Q ss_pred cCCCCCcH--HHHH----hc---cccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 214 LMDKGTDA--VDIL----EG---KSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 214 ~~~~~~~~--~~~l----~~---~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+.+..... ...+ .. ........++.+++.++++++++...+...
T Consensus 184 l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 184 GEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred ccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 98654210 0111 10 000111236778888888888777665543
No 290
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.22 E-value=4e-06 Score=85.89 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPR 62 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~ 62 (609)
-.+++|||.+|+|||||+|+|+|....++
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 46899999999999999999999875333
No 291
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=3e-06 Score=87.66 Aligned_cols=105 Identities=22% Similarity=0.249 Sum_probs=64.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.++.+||-||+|||||+||++....-+.+...||=-|.+=.. +.++ ..+ .....+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv-~v~d------------~rl-----------~~L~~~~ 58 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVV-YVPD------------CRL-----------DELAEIV 58 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEE-ecCc------------hHH-----------HHHHHhc
Confidence 578999999999999999999988655666778866632220 0000 000 0001111
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
+.+ +. + + ...+.|||.+|+.+.++.|. .+. +--..-|+++|+|+.||..
T Consensus 59 ~c~----~k-~---~----~~~ve~vDIAGLV~GAs~Ge--GLG----NkFL~~IRevdaI~hVVr~ 107 (372)
T COG0012 59 KCP----PK-I---R----PAPVEFVDIAGLVKGASKGE--GLG----NKFLDNIREVDAIIHVVRC 107 (372)
T ss_pred CCC----Cc-E---E----eeeeEEEEecccCCCcccCC--Ccc----hHHHHhhhhcCeEEEEEEe
Confidence 100 00 0 1 13688999999999887652 233 2334567899999998754
No 292
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.21 E-value=1.7e-05 Score=71.23 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=58.2
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH-HHHHhCC----CCCceEEEe
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK-ISREVDP----RGDRTFGVL 209 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~-l~~~~d~----~~~rti~Vl 209 (609)
..|.|.||.|+...+ .++-+.|++-+|+.+|+..+++. ..-+... +-+++|. ...++++..
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~--eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDP--ESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCH--HHHHHHHHHHHHHhhccccccccEEEEe
Confidence 368899999987642 45778999999999998766542 2222222 3445553 335788888
Q ss_pred cccCcCCCCCcHHHHHhccccccCCceeeEeeC
Q 007296 210 TKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNR 242 (609)
Q Consensus 210 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~ 242 (609)
||+|+.++.+-..++.+.....-+...+.|...
T Consensus 126 N~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~ 158 (198)
T KOG3883|consen 126 NKRDRAEPREVDMDVAQIWAKREKVKLWEVTAM 158 (198)
T ss_pred chhhcccchhcCHHHHHHHHhhhheeEEEEEec
Confidence 999998665533344333333333444445443
No 293
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=4.5e-06 Score=94.63 Aligned_cols=136 Identities=17% Similarity=0.246 Sum_probs=91.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.+..|.|+|.--+||||+.++|+-.. |..++ +.++. .+..+.|+.+...
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~----------------~g~~~~D~~e~Eq-------- 57 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH----------------DGAATMDWMEQEQ-------- 57 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc----------------CCCccCCCcHHHH--------
Confidence 57889999999999999999997432 33333 21111 1122334433221
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.++-++....+++...+ ...+.||||||..++.. -|.+.++-.|..++| +++..+...|..
T Consensus 58 --eRGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt~-------------EV~rslrvlDgavvV-vdaveGV~~QTE- 118 (697)
T COG0480 58 --ERGITITSAATTLFWKG--DYRINLIDTPGHVDFTI-------------EVERSLRVLDGAVVV-VDAVEGVEPQTE- 118 (697)
T ss_pred --hcCCEEeeeeeEEEEcC--ceEEEEeCCCCccccHH-------------HHHHHHHhhcceEEE-EECCCCeeecHH-
Confidence 23344555666655543 35889999999988743 356677778888765 466666666654
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
.+.++++..+.|.|+++||+|.+...
T Consensus 119 tv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 119 TVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHHhhcCCCeEEEEECccccccC
Confidence 47888888999999999999998544
No 294
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.15 E-value=5e-06 Score=82.38 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=27.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC--CcCccccc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK--DFLPRGSG 65 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~--~~lP~~~~ 65 (609)
+.-.|+|+|.+++|||+|||.|+|. .| +.+.+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~ 39 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDT 39 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCC
Confidence 5678999999999999999999998 54 55544
No 295
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.13 E-value=1.6e-05 Score=78.20 Aligned_cols=152 Identities=20% Similarity=0.229 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCC------------Cccchhhc----cCCC-Cc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQE------------GKEYAEFM----HLPR-KR 95 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~------------~~~~~~~~----~~~~-~~ 95 (609)
.-+.|+|||--+|||+|++..|.+.-. ... | .|-++.|-+.-. ...|.+.+ -+|+ ..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~--~~~---~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH--AKK---T-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh--hcc---C-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 467899999999999999999987421 110 1 144444322110 01222222 2232 22
Q ss_pred c-------CChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHh
Q 007296 96 F-------NDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSY 168 (609)
Q Consensus 96 ~-------~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~y 168 (609)
. +.|+++...|+...+ ..+..+|||||.+..-.=..+-.+ ++..+
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~----------------------~~~~~liDTPGQIE~FtWSAsGsI------Ite~l 143 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAE----------------------EFDYVLIDTPGQIEAFTWSASGSI------ITETL 143 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhc----------------------ccCEEEEcCCCceEEEEecCCccc------hHhhH
Confidence 2 234444444443321 246789999997652211011111 22233
Q ss_pred hcCCceEEEEEecCCCcccc----hHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 169 IEKPNCIILAISPANQDLAT----SDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 169 i~~~~~iIL~v~~a~~d~~~----~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
...-.+||..|++....-.. +-.+..+.-+-....|+|+|.||+|+.+.+
T Consensus 144 ass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 144 ASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred hhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 33334444444443221111 223333344556678999999999998765
No 296
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2.5e-05 Score=81.50 Aligned_cols=68 Identities=19% Similarity=0.362 Sum_probs=43.3
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-------ccch--HHHHHHHHhCCCCCc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-------LATS--DAIKISREVDPRGDR 204 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-------~~~~--~~l~l~~~~d~~~~r 204 (609)
...++++|+||... .+.+|+.. +.++|+.||+|.. +.+ ...| +..-+++.+. -..
T Consensus 84 k~~~tIiDaPGHrd------------FvknmItG-asqAD~aVLVV~a-~~~efE~g~~~~gQtrEH~~La~tlG--i~~ 147 (428)
T COG5256 84 KYNFTIIDAPGHRD------------FVKNMITG-ASQADVAVLVVDA-RDGEFEAGFGVGGQTREHAFLARTLG--IKQ 147 (428)
T ss_pred CceEEEeeCCchHH------------HHHHhhcc-hhhccEEEEEEEC-CCCccccccccCCchhHHHHHHHhcC--Cce
Confidence 45899999999322 23444332 4578999997654 433 2222 3333666554 367
Q ss_pred eEEEecccCcCCC
Q 007296 205 TFGVLTKIDLMDK 217 (609)
Q Consensus 205 ti~VltK~D~~~~ 217 (609)
.|+++||+|.++-
T Consensus 148 lIVavNKMD~v~w 160 (428)
T COG5256 148 LIVAVNKMDLVSW 160 (428)
T ss_pred EEEEEEccccccc
Confidence 8999999999963
No 297
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.12 E-value=3.7e-06 Score=86.56 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
-.+|+|||.+|+|||||+|+|+|...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 46899999999999999999999875
No 298
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.11 E-value=1e-05 Score=84.92 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=62.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc-CcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF-LPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+.+||-||+|||||+|+|++... -+.....||--|..-.+.. ++.+ ++.+ ...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v-~d~r---------------~d~L--------~~~ 58 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNP-SDPR---------------LDLL--------AIY 58 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEe-chhH---------------HHHH--------HHH
Confidence 4689999999999999999999874 3344467777774422211 1100 0000 000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
....+ + ....+.++|.||+...+..|.. + -+-..+.++.+|+++.||..
T Consensus 59 ~~~~~----------~---~~a~i~~~DiaGlv~gAs~g~G--l----gn~fL~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 59 IKPEK----------V---PPTTTEFVDIAGLVGGASKGEG--L----GNQFLANIREVDIIQHVVRC 107 (368)
T ss_pred hCCcC----------c---CCceEEEEeccccccchhcccC--c----chHHHHHHHhCCEEEEEEeC
Confidence 00000 0 0125789999999987655321 1 23456678899999887654
No 299
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.09 E-value=7.1e-05 Score=80.38 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=49.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||.... ...+...+..+. ...+++.++||++ +..+ +++...++.+...-..+-+|+||.|.
T Consensus 183 ~DvViIDTaGr~~~-----d~~lm~El~~i~--~~~~p~e~lLVld-a~~G---q~a~~~a~~F~~~~~~~g~IlTKlD~ 251 (429)
T TIGR01425 183 FDIIIVDTSGRHKQ-----EDSLFEEMLQVA--EAIQPDNIIFVMD-GSIG---QAAEAQAKAFKDSVDVGSVIITKLDG 251 (429)
T ss_pred CCEEEEECCCCCcc-----hHHHHHHHHHHh--hhcCCcEEEEEec-cccC---hhHHHHHHHHHhccCCcEEEEECccC
Confidence 58899999996542 112333333322 1335777777654 4432 34455666665555678899999999
Q ss_pred CCCCCcHHHHH
Q 007296 215 MDKGTDAVDIL 225 (609)
Q Consensus 215 ~~~~~~~~~~l 225 (609)
...+..+..+.
T Consensus 252 ~argG~aLs~~ 262 (429)
T TIGR01425 252 HAKGGGALSAV 262 (429)
T ss_pred CCCccHHhhhH
Confidence 87776555554
No 300
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.09 E-value=1.3e-05 Score=79.31 Aligned_cols=120 Identities=21% Similarity=0.293 Sum_probs=69.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc--ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG--IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|+++|..+|||||..+.+.+.. .|.++. -.|-.+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCce-----------------------------------------
Confidence 58999999999999999999874 355542 0111110
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc-----
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT----- 188 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~----- 188 (609)
.-.+.......+.+||.||....-.. .....-....++..++|.|++.-+.+...
T Consensus 39 ------------~~~v~~~~~~~l~iwD~pGq~~~~~~--------~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~ 98 (232)
T PF04670_consen 39 ------------KSHVRFLSFLPLNIWDCPGQDDFMEN--------YFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYL 98 (232)
T ss_dssp ------------EEEEECTTSCEEEEEEE-SSCSTTHT--------THTCCHHHHHCTESEEEEEEETT-STCHHHHHHH
T ss_pred ------------EEEEecCCCcEEEEEEcCCccccccc--------cccccHHHHHhccCEEEEEEEcccccHHHHHHHH
Confidence 01133344568899999998654211 00011233467888888876444344322
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
...+..+.+..| +..+.+.+.|+|++.++
T Consensus 99 ~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 99 SDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 223345667777 47888999999998644
No 301
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.09 E-value=9.1e-07 Score=81.11 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=44.8
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH-HHHHHHHhC--CCCCceEEEeccc
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD-AIKISREVD--PRGDRTFGVLTKI 212 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~-~l~l~~~~d--~~~~rti~VltK~ 212 (609)
.+.+|||.|... +..+++.|.+++.+-+||... .|...-+ .+.+-+++. -...|+++|-||+
T Consensus 70 r~mlWdtagqeE-------------fDaItkAyyrgaqa~vLVFST--TDr~SFea~~~w~~kv~~e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 70 RSMLWDTAGQEE-------------FDAITKAYYRGAQASVLVFST--TDRYSFEATLEWYNKVQKETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHhccchh-------------HHHHHHHHhccccceEEEEec--ccHHHHHHHHHHHHHHHHHhccCCeEEeeccc
Confidence 456899999654 366788999999988886543 2322222 222333222 2358999999999
Q ss_pred CcCCCC
Q 007296 213 DLMDKG 218 (609)
Q Consensus 213 D~~~~~ 218 (609)
|+++..
T Consensus 135 Dlveds 140 (246)
T KOG4252|consen 135 DLVEDS 140 (246)
T ss_pred hhhHhh
Confidence 998654
No 302
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=9.4e-06 Score=77.17 Aligned_cols=116 Identities=21% Similarity=0.313 Sum_probs=73.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-|.|.++|.++||||||+-.|+-..+ .+|++.+..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~----------~~TvtSiep----------------------------------- 72 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSH----------RGTVTSIEP----------------------------------- 72 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCc----------cCeeeeecc-----------------------------------
Confidence 47999999999999999988875433 222222211
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc---CCceEEEEEecCCCcccchH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE---KPNCIILAISPANQDLATSD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~---~~~~iIL~v~~a~~d~~~~~ 190 (609)
+.....+ +....++||.||-.+. +.-...|++ .+-+|++||+++..+-...+
T Consensus 73 ---------n~a~~r~---gs~~~~LVD~PGH~rl-------------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrd 127 (238)
T KOG0090|consen 73 ---------NEATYRL---GSENVTLVDLPGHSRL-------------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRD 127 (238)
T ss_pred ---------ceeeEee---cCcceEEEeCCCcHHH-------------HHHHHHHccccccceeEEEEEeccccchhhHH
Confidence 1111111 1224799999997763 455566666 57789898887765443333
Q ss_pred HHHH----HH--HhCCCCCceEEEecccCcCCCCC
Q 007296 191 AIKI----SR--EVDPRGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 191 ~l~l----~~--~~d~~~~rti~VltK~D~~~~~~ 219 (609)
+-.+ +- +....+.+++++.||-|+.-..+
T Consensus 128 vaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 128 VAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred HHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 3222 11 22456788999999999976554
No 303
>PRK12289 GTPase RsgA; Reviewed
Probab=98.08 E-value=7e-06 Score=86.42 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
.++|+|.+|+|||||||+|.|...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccc
Confidence 589999999999999999998764
No 304
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.08 E-value=6e-06 Score=83.61 Aligned_cols=103 Identities=24% Similarity=0.316 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+-+.|.+||-||+||||++|+|+....-|.....||-=|.+-+. ..+..+| + -...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V-------------~v~d~Rf---d--------~l~~ 74 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARV-------------EVPDSRF---D--------LLCP 74 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceecccccee-------------ecCchHH---H--------HHHH
Confidence 45689999999999999999999988645555567755532221 0011111 0 0011
Q ss_pred hcCCCCcccCCceEEEEecCCC---CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 113 ETGRSKAISTVPIHLSIFSPNV---VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
+|+|.. ..|+++|.+|+++.++.|+. + -+--.+.|+.+|+|+-+|..
T Consensus 75 ----------------~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G--L----GN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 75 ----------------IYGPKSKVPAFLTVYDIAGLVKGASAGEG--L----GNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred ----------------hcCCcceeeeeEEEEeecccccCcccCcC--c----hHHHHHhhhhccceeEEEEe
Confidence 233221 26899999999998877533 2 23345668889999887643
No 305
>PRK13768 GTPase; Provisional
Probab=98.08 E-value=2.4e-05 Score=79.03 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcC--CceEEEEEecCCCcccc-----hHHHHHHHHhCCCCCceEE
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEK--PNCIILAISPANQDLAT-----SDAIKISREVDPRGDRTFG 207 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iIL~v~~a~~d~~~-----~~~l~l~~~~d~~~~rti~ 207 (609)
.++.+|||||....... ......++ +++.. ++++++++ ++...... ..++.+..+. ..+.+.+.
T Consensus 97 ~~~~~~d~~g~~~~~~~------~~~~~~~~-~~l~~~~~~~ii~li-D~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF------RESGRKLV-ERLSGSSKSVVVFLI-DAVLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHhh------hHHHHHHH-HHHHhcCCeEEEEEe-chHHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 37899999997764321 11112222 33333 66666655 44322211 1122222222 34789999
Q ss_pred EecccCcCCCC
Q 007296 208 VLTKIDLMDKG 218 (609)
Q Consensus 208 VltK~D~~~~~ 218 (609)
|+||+|+.+..
T Consensus 168 v~nK~D~~~~~ 178 (253)
T PRK13768 168 VLNKADLLSEE 178 (253)
T ss_pred EEEhHhhcCch
Confidence 99999998764
No 306
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.05 E-value=1.2e-05 Score=80.69 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..++++|.+|+|||||||+|.|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 5899999999999999999998754
No 307
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.04 E-value=2.8e-05 Score=80.02 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=55.4
Q ss_pred CCcEEEeCCCCccccCCCC-ccchHHHHHHHHHHhhc--------------CCceEEEEEecCCCcccchHHHHHHHHhC
Q 007296 135 VNLTLIDLPGLTKVAVDGQ-PESIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDAIKISREVD 199 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~--------------~~~~iIL~v~~a~~d~~~~~~l~l~~~~d 199 (609)
.+|+++||||+...-.... -+-+.+.++..-..|+. +.+|++.++-|.+..+..-|.. ..+++.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe-~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE-AMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH-HHHHHh
Confidence 4789999999887533211 12245556666666654 2467777777777777777754 566666
Q ss_pred CCCCceEEEecccCcCCCC
Q 007296 200 PRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 200 ~~~~rti~VltK~D~~~~~ 218 (609)
. ....|=||.|.|.....
T Consensus 161 ~-~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDD 178 (373)
T ss_pred c-ccCeeeeeeccccCCHH
Confidence 4 37899999999998654
No 308
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.03 E-value=8.1e-06 Score=86.73 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 309
>PRK12288 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.6e-05 Score=83.67 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=22.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
.++++|.+|+|||||||+|+|...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 589999999999999999998764
No 310
>PRK13796 GTPase YqeH; Provisional
Probab=98.01 E-value=5.6e-06 Score=88.06 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
..++|||.+|||||||||+|.+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 479999999999999999998753
No 311
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=3.3e-05 Score=81.21 Aligned_cols=153 Identities=20% Similarity=0.265 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCC--------ccchhhccCCCCccCChHHHHHH
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEG--------KEYAEFMHLPRKRFNDFAAVRKE 105 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~ 105 (609)
-..|++||..||||||++..|.+. +...+. + +-+...+.. ..|+.....+-....+..++.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~~Gk----k----VglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~a 311 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHGKKK----T----VGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRA 311 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHHcCC----c----EEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHH
Confidence 358999999999999999999864 211110 0 011111111 12222222221112344444444
Q ss_pred HHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc
Q 007296 106 ISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD 185 (609)
Q Consensus 106 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d 185 (609)
+..... ....++.||||||-.... ......+..++.. ..++.++|| ++++.
T Consensus 312 L~~lk~--------------------~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~--~~PdevlLV-LsATt- 362 (436)
T PRK11889 312 LTYFKE--------------------EARVDYILIDTAGKNYRA-----SETVEEMIETMGQ--VEPDYICLT-LSASM- 362 (436)
T ss_pred HHHHHh--------------------ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhh--cCCCeEEEE-ECCcc-
Confidence 432211 012488999999975421 1122222222221 246666665 45432
Q ss_pred ccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHh
Q 007296 186 LATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 186 ~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
..++....++.+... ...=+|+||.|....+..+.++..
T Consensus 363 -k~~d~~~i~~~F~~~-~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 363 -KSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred -ChHHHHHHHHHhcCC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 234555677777663 456678999999988777777764
No 312
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.00 E-value=3.9e-06 Score=75.50 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
--.||++|.--+|||||+-+.+.-+|- |-.. +.+.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn------~kHl-----------------------------sTlQ---------- 47 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFN------CKHL-----------------------------STLQ---------- 47 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcc------hhhH-----------------------------HHHH----------
Confidence 358999999999999999999888771 1000 0000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
..|-.+.+. +.+ ...+|.||||+|..++ ..+-.-|.+++|..+||.+-...| +-+....
T Consensus 48 ----ASF~~kk~n--~ed-~ra~L~IWDTAGQErf-------------HALGPIYYRgSnGalLVyDITDrd-SFqKVKn 106 (218)
T KOG0088|consen 48 ----ASFQNKKVN--VED-CRADLHIWDTAGQERF-------------HALGPIYYRGSNGALLVYDITDRD-SFQKVKN 106 (218)
T ss_pred ----HHHhhcccc--ccc-ceeeeeeeeccchHhh-------------hccCceEEeCCCceEEEEeccchH-HHHHHHH
Confidence 011122222 222 3458999999998775 334456899999998875432222 2233333
Q ss_pred HHHH---hCCCCCceEEEecccCcCCCC
Q 007296 194 ISRE---VDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 194 l~~~---~d~~~~rti~VltK~D~~~~~ 218 (609)
+.++ ......-.++|.||+|+-.+.
T Consensus 107 WV~Elr~mlGnei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 107 WVLELRTMLGNEIELLIVGNKIDLEEER 134 (218)
T ss_pred HHHHHHHHhCCeeEEEEecCcccHHHhh
Confidence 4433 334445678899999996544
No 313
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.98 E-value=3.1e-05 Score=72.02 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
...+++++|.+|+||||++|++.+...
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 356789999999999999999998654
No 314
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.96 E-value=3.9e-05 Score=90.51 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
.|.++||||||.... ..+...+...+|+++||+ +++.++..+. ...+..+...+.|+|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe~F-------------~~lr~~g~~~aDivlLVV-Da~~Gi~~qT-~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHEAF-------------TSLRKRGGSLADLAVLVV-DINEGFKPQT-IEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEE-ECcccCCHhH-HHHHHHHHHcCCCEEEEEECCC
Confidence 467999999995442 344455677899998876 4554444333 2233344445789999999999
Q ss_pred cCC
Q 007296 214 LMD 216 (609)
Q Consensus 214 ~~~ 216 (609)
+.+
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 315
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=4.2e-05 Score=79.35 Aligned_cols=83 Identities=25% Similarity=0.437 Sum_probs=54.3
Q ss_pred CCcEEEeCCCCccccCCCC-ccchHHHHHHHHHHhhc-------------CCceEEEEEecCCCcccchHHHHHHHHhCC
Q 007296 135 VNLTLIDLPGLTKVAVDGQ-PESIVQDIENMVRSYIE-------------KPNCIILAISPANQDLATSDAIKISREVDP 200 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~-------------~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~ 200 (609)
.+||+|||||+.+.-.... -.-+...+.+.-..|+. +.+|.+.++.|.+.++..-|.. +.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~-~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE-FMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH-HHHHHhc
Confidence 4789999999876432211 12244455555566654 3467777777777777666654 5555543
Q ss_pred CCCceEEEecccCcCCCCC
Q 007296 201 RGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 201 ~~~rti~VltK~D~~~~~~ 219 (609)
...+|-||.|.|.+.+..
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 478999999999987653
No 316
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=1.3e-05 Score=73.62 Aligned_cols=111 Identities=14% Similarity=0.233 Sum_probs=72.8
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc--chHHHHHHHHhCCCCCceEEEec
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA--TSDAIKISREVDPRGDRTFGVLT 210 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~--~~~~l~l~~~~d~~~~rti~Vlt 210 (609)
...+.|||+-|.-. .+++...|...+++||.++++.+.+ +. .+.-.++...-.-.|.|.+..+|
T Consensus 68 ~~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 35789999988432 3899999999999999987766532 22 12222344445567899999999
Q ss_pred ccCcCCCCC--cHHHHHh-cccccc-CCceeeEeeCChhhhcccccHHHHH
Q 007296 211 KIDLMDKGT--DAVDILE-GKSYKL-RYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 211 K~D~~~~~~--~~~~~l~-~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
|-|+-+..+ +...++. ....+- ...+-+|+...++++++.+.+....
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~ 185 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKK 185 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHH
Confidence 999865442 2222222 122222 2567788888888888877766543
No 317
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=6.1e-05 Score=66.73 Aligned_cols=150 Identities=20% Similarity=0.280 Sum_probs=91.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
=-+|+.+|-..|||+|+|-.|.-.. .+|..|
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ip------------------------------------------ 47 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIP------------------------------------------ 47 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-------Cccccc------------------------------------------
Confidence 4579999999999999999886432 334344
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
+.||+-+.+. .....+.++|+.|..+ ++.+.++|......+|+|+++|..|--.....+
T Consensus 48 ---TvGFnvetVt-----ykN~kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~E 106 (180)
T KOG0071|consen 48 ---TVGFNVETVT-----YKNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNE 106 (180)
T ss_pred ---ccceeEEEEE-----eeeeEEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhhHHHHHHH
Confidence 2334332222 2345678999999655 488999999999999999988775422221112
Q ss_pred HHHHhCC---CCCceEEEecccCcCCCCC--cHHHHHhccccccC-CceeeE--eeCChhhhcccccHHH
Q 007296 194 ISREVDP---RGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKLR-YPWIGV--VNRSQADINKSVDMIA 255 (609)
Q Consensus 194 l~~~~d~---~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~-~g~~~v--~~~s~~~i~~~~~~~~ 255 (609)
+-+-+.. ...+.++..||-|+.+... +..++++-+. ++ ..|++. ...+++++.++++.+.
T Consensus 107 Lh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~--~r~~~W~vqp~~a~~gdgL~eglswls 174 (180)
T KOG0071|consen 107 LHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER--IRDRNWYVQPSCALSGDGLKEGLSWLS 174 (180)
T ss_pred HHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc--ccCCccEeeccccccchhHHHHHHHHH
Confidence 3332322 2356677789999976543 3455654322 33 455533 2234455555555443
No 318
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.92 E-value=9e-06 Score=78.84 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
=.+|++||-||+||||||..|++-.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcch
Confidence 4699999999999999999999764
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.92 E-value=1.5e-05 Score=77.28 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||..... .+..+.++++... + .++-++||+ +++.... +........+.. ...=+|+||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~-~-~~~~~~LVl-sa~~~~~--~~~~~~~~~~~~-~~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRD-----EELLEELKKLLEA-L-NPDEVHLVL-SATMGQE--DLEQALAFYEAF-GIDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTH-----HHHHHHHHHHHHH-H-SSSEEEEEE-EGGGGGH--HHHHHHHHHHHS-STCEEEEESTTS
T ss_pred CCEEEEecCCcchhh-----HHHHHHHHHHhhh-c-CCccceEEE-ecccChH--HHHHHHHHhhcc-cCceEEEEeecC
Confidence 489999999976431 1223333333322 2 555565654 5543322 211122222222 234567999999
Q ss_pred CCCCCcHHHHHh
Q 007296 215 MDKGTDAVDILE 226 (609)
Q Consensus 215 ~~~~~~~~~~l~ 226 (609)
........+++.
T Consensus 153 t~~~G~~l~~~~ 164 (196)
T PF00448_consen 153 TARLGALLSLAY 164 (196)
T ss_dssp SSTTHHHHHHHH
T ss_pred CCCcccceeHHH
Confidence 887766666654
No 320
>PRK14974 cell division protein FtsY; Provisional
Probab=97.92 E-value=3.8e-05 Score=80.30 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=50.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||..... .++...++.+.+ .-+++.++||+ ++.. -+++...++.....-...-+|+||.|.
T Consensus 223 ~DvVLIDTaGr~~~~-----~~lm~eL~~i~~--~~~pd~~iLVl-~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTD-----ANLMDELKKIVR--VTKPDLVIFVG-DALA---GNDAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCc-----HHHHHHHHHHHH--hhCCceEEEee-cccc---chhHHHHHHHHHhcCCCCEEEEeeecC
Confidence 478999999987532 223333433322 23577777654 5443 245555666655433457889999999
Q ss_pred CCCCCcHHHHHh
Q 007296 215 MDKGTDAVDILE 226 (609)
Q Consensus 215 ~~~~~~~~~~l~ 226 (609)
...+..+..+..
T Consensus 292 ~~~~G~~ls~~~ 303 (336)
T PRK14974 292 DAKGGAALSIAY 303 (336)
T ss_pred CCCccHHHHHHH
Confidence 888776666653
No 321
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.3e-05 Score=81.19 Aligned_cols=135 Identities=21% Similarity=0.287 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..++||..--.|||||..+|+..- | |+-+ +.+.+ ++.+.++-+ |
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~------------------~~~q~------q~LDkl~vE--R 104 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDN------------------NIGQE------QVLDKLQVE--R 104 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCC------------------CCchh------hhhhhhhhh--h
Confidence 46689999999999999999987542 1 1111 00111 122222211 1
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..| -++....-.+........-|.+|||||..++..+ |.+-+.-++.+||+| +|+.+...|...
T Consensus 105 ERG--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E-------------VsRslaac~G~lLvV-DA~qGvqAQT~a 168 (650)
T KOG0462|consen 105 ERG--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE-------------VSRSLAACDGALLVV-DASQGVQAQTVA 168 (650)
T ss_pred hcC--cEEEeeeeEEEEEcCCceEEEeecCCCcccccce-------------ehehhhhcCceEEEE-EcCcCchHHHHH
Confidence 122 2233333233222222345889999999887544 445556678888865 667777777655
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
.+...+ ..+..+|.|+||+|+-...
T Consensus 169 nf~lAf-e~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 169 NFYLAF-EAGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred HHHHHH-HcCCeEEEeeeccCCCCCC
Confidence 444433 3468999999999996543
No 322
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.87 E-value=1.4e-05 Score=74.33 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..++++|..+||||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 7899999999999999999999754
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00021 Score=75.04 Aligned_cols=151 Identities=16% Similarity=0.218 Sum_probs=80.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCC--------ccchhhccCCCCccCChHHHHHH
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEG--------KEYAEFMHLPRKRFNDFAAVRKE 105 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~ 105 (609)
-..|+++|++||||||++..|... +...+. .+.+...+.. ..|+.....+-....+..++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~--------~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a 276 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNR--------TVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA 276 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCC--------eEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence 456789999999999999999853 222221 1111122211 12222222222222455555444
Q ss_pred HHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCC
Q 007296 106 ISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPAN 183 (609)
Q Consensus 106 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~ 183 (609)
+..... ....++.||||||.... ....+.++ ..+.. .++.++| |.+++
T Consensus 277 l~~l~~--------------------~~~~D~VLIDTAGr~~~--------d~~~l~EL-~~l~~~~~p~~~~L-VLsag 326 (407)
T PRK12726 277 VQYMTY--------------------VNCVDHILIDTVGRNYL--------AEESVSEI-SAYTDVVHPDLTCF-TFSSG 326 (407)
T ss_pred HHHHHh--------------------cCCCCEEEEECCCCCcc--------CHHHHHHH-HHHhhccCCceEEE-ECCCc
Confidence 432210 01248899999997642 12222332 22332 4565555 44443
Q ss_pred CcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHh
Q 007296 184 QDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 184 ~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
...++...+++.+... ...-+|+||.|.......+..+..
T Consensus 327 --~~~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 327 --MKSADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred --ccHHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 2334455566655543 345677999999887776666653
No 324
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.85 E-value=7.1e-05 Score=69.96 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
|.++++|..+|||||+++.+.+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 78999999999999999999876
No 325
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.82 E-value=1.5e-05 Score=76.03 Aligned_cols=118 Identities=23% Similarity=0.244 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
--.++|||+-.+|||+||-+.+-..| |.+. .||+.-
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~y-----vPTVFd-------------------------------------- 39 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEEY-----VPTVFD-------------------------------------- 39 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcC-cccc-----cCeEEc--------------------------------------
Confidence 35799999999999999999987754 5443 343321
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecC---CCcccchH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPA---NQDLATSD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a---~~d~~~~~ 190 (609)
+-...+.+-......|.+|||.|...... ++-+ ...++|.++++..-. +.....+.
T Consensus 40 --------nys~~v~V~dg~~v~L~LwDTAGqedYDr----------lRpl---sY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 40 --------NYSANVTVDDGKPVELGLWDTAGQEDYDR----------LRPL---SYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred --------cceEEEEecCCCEEEEeeeecCCCccccc----------cccc---CCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 11112223212234688999999776411 2222 346778887754322 22222345
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
|+.-.+...| +.|+|+|.||.|+.+.
T Consensus 99 W~pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 99 WIPEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred hhHHHHhhCC-CCCEEEEeehHHhhhC
Confidence 5555566665 5899999999999843
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.00011 Score=80.12 Aligned_cols=134 Identities=16% Similarity=0.270 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..-.++++|.-.+|||+|+..|++... |.... +.+..|+.++.. - .+.
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~-----~~e~~lrytD~l------------------~------~E~-- 174 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTH-PDFSK-----NTEADLRYTDTL------------------F------YEQ-- 174 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceecc-ccccc-----cccccccccccc------------------h------hhH--
Confidence 356899999999999999999999864 44422 222222222110 0 001
Q ss_pred hcCCCCcccCCceEEEEecCCC--CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNV--VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~--~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
..+.++-..++.+-..+... .-++++||||..... +-+...++-+|.++|+++.+..=.-+.+
T Consensus 175 --eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~-------------DE~ta~l~~sDgvVlvvDv~EGVmlntE 239 (971)
T KOG0468|consen 175 --ERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS-------------DETTASLRLSDGVVLVVDVAEGVMLNTE 239 (971)
T ss_pred --hcCceEeecceEEEEecCcCceeeeeeecCCCcccch-------------HHHHHHhhhcceEEEEEEcccCceeeHH
Confidence 12333444555555444332 357899999987753 2233456778999887765543233322
Q ss_pred HHHHHHHhCCCCCceEEEecccCcC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
++++..-....++++|+||+|++
T Consensus 240 --r~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 240 --RIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred --HHHHHHHhccCcEEEEEehhHHH
Confidence 36677777789999999999974
No 327
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.82 E-value=8.2e-05 Score=71.88 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCccccCCCC-ccchHHHHHHHHHHhhc--------------CCceEEEEEecCCCcccchHHHHHHHHhC
Q 007296 135 VNLTLIDLPGLTKVAVDGQ-PESIVQDIENMVRSYIE--------------KPNCIILAISPANQDLATSDAIKISREVD 199 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~--------------~~~~iIL~v~~a~~d~~~~~~l~l~~~~d 199 (609)
.+|+++||||+.+.-..+. =+-+.+.|.+.-.+|++ ..+|++.++-|....+..-|. .+.+.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDi-eflkrLt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDI-EFLKRLT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccH-HHHHHHh
Confidence 3789999999876432211 12244445444444543 246777766665554444343 2444443
Q ss_pred CCCCceEEEecccCcCC
Q 007296 200 PRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 200 ~~~~rti~VltK~D~~~ 216 (609)
.. ..+|-|+-|.|.+.
T Consensus 183 ~v-vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 183 EV-VNVVPVIAKADTLT 198 (336)
T ss_pred hh-heeeeeEeeccccc
Confidence 22 56888999999864
No 328
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=6.9e-05 Score=76.01 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCC-----ccchhhccCCC---CccCChHHHHH
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEG-----KEYAEFMHLPR---KRFNDFAAVRK 104 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~-----~~~~~~~~~~~---~~~~~~~~v~~ 104 (609)
..+.|+++|.+++||||++..|.+.- ...+. .+-+...+.. ..|..+....+ ....+...+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~--------~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~ 144 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HGKKK--------TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR 144 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HHcCC--------eEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHH
Confidence 34799999999999999999998752 11110 1111111111 11211111111 11123334433
Q ss_pred HHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC
Q 007296 105 EISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ 184 (609)
Q Consensus 105 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~ 184 (609)
.+..... ....++.||||||-.... .+..+.+.++.. .-.++-++||+ +++.
T Consensus 145 ~l~~l~~--------------------~~~~D~ViIDt~Gr~~~~-----~~~l~el~~~~~--~~~~~~~~LVl-~a~~ 196 (270)
T PRK06731 145 ALTYFKE--------------------EARVDYILIDTAGKNYRA-----SETVEEMIETMG--QVEPDYICLTL-SASM 196 (270)
T ss_pred HHHHHHh--------------------cCCCCEEEEECCCCCcCC-----HHHHHHHHHHHh--hhCCCeEEEEE-cCcc
Confidence 3322110 012488999999976421 112222222221 22456566654 5442
Q ss_pred cccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHh
Q 007296 185 DLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 185 d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
..++....++.+... ...=+|+||.|.......+.++..
T Consensus 197 --~~~d~~~~~~~f~~~-~~~~~I~TKlDet~~~G~~l~~~~ 235 (270)
T PRK06731 197 --KSKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 235 (270)
T ss_pred --CHHHHHHHHHHhCCC-CCCEEEEEeecCCCCccHHHHHHH
Confidence 234566677777763 456678999999988776666654
No 329
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00014 Score=77.00 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
--.++++|++++||||++..|.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 330
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.79 E-value=1.6e-05 Score=84.56 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccccccccccc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRP 71 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p 71 (609)
+.-.|.+||-||+||||+||+|+|.+. --||+.|
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~Kk-----VsVS~TP 346 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKK-----VSVSSTP 346 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCce-----eeeecCC
Confidence 356889999999999999999999986 3466666
No 331
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=7e-05 Score=85.36 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=81.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCC--------CccchhhccCCCCccCChHHHHHHHH
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQE--------GKEYAEFMHLPRKRFNDFAAVRKEIS 107 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~i~ 107 (609)
.|++||.++|||||.+..|.+... +.... -.+-+...+. ...|++....+.....+..++.+.+.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~------kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~ 259 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGA------DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA 259 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCC------CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH
Confidence 679999999999999999998632 22110 0011111111 13344444434333345555544443
Q ss_pred HHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc
Q 007296 108 DETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA 187 (609)
Q Consensus 108 ~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~ 187 (609)
.. ...+++||||||..... ..+.+.+..+.. ...++-++||+ +++. .
T Consensus 260 ~~-----------------------~~~D~VLIDTAGRs~~d-----~~l~eel~~l~~--~~~p~e~~LVL-sAt~--~ 306 (767)
T PRK14723 260 AL-----------------------GDKHLVLIDTVGMSQRD-----RNVSEQIAMLCG--VGRPVRRLLLL-NAAS--H 306 (767)
T ss_pred Hh-----------------------cCCCEEEEeCCCCCccC-----HHHHHHHHHHhc--cCCCCeEEEEE-CCCC--c
Confidence 21 12378999999976531 113333322221 22455565654 5443 1
Q ss_pred chHHHHHHHHhCCCC--CceEEEecccCcCCCCCcHHHHHh
Q 007296 188 TSDAIKISREVDPRG--DRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 188 ~~~~l~l~~~~d~~~--~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
.++..++++.+.... ..+=+|+||.|....+..+.++..
T Consensus 307 ~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 307 GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 223333555554321 345678999999988877777764
No 332
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.76 E-value=3.2e-05 Score=77.20 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=22.3
Q ss_pred EEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCC
Q 007296 39 VVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQE 81 (609)
Q Consensus 39 VvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 81 (609)
|+|++||||||+..++... ++. --|.+..+.|-++.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~~----~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LES----NGRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HTT----T-S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHH--HHh----ccCCceEEEcchHhc
Confidence 7999999999999999863 222 125555556544433
No 333
>PRK00098 GTPase RsgA; Reviewed
Probab=97.75 E-value=0.00012 Score=75.77 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
-.++++|.+|+|||||+|+|+|...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 4799999999999999999999753
No 334
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.75 E-value=4.7e-06 Score=72.76 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC-ccc-chHHHHHHHHhCCCCCceEEEecc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ-DLA-TSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~-d~~-~~~~l~l~~~~d~~~~rti~VltK 211 (609)
...|.+|||.|..+. ++.+..|.+++|+++|+.+-+|. .+. .+.|+.-+.++.....-...+.||
T Consensus 46 kvklqiwdtagqerf-------------rsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk 112 (192)
T KOG0083|consen 46 KVKLQIWDTAGQERF-------------RSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNK 112 (192)
T ss_pred EEEEEEeeccchHHH-------------hhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccc
Confidence 357899999997664 78889999999999988665553 222 345666666666666678889999
Q ss_pred cCcCCCCC----cHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 212 IDLMDKGT----DAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 212 ~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+|+..+.. +-.++. ...+++|...+..++-+++-.+.
T Consensus 113 ~d~a~er~v~~ddg~kla----~~y~ipfmetsaktg~nvd~af~ 153 (192)
T KOG0083|consen 113 CDLAHERAVKRDDGEKLA----EAYGIPFMETSAKTGFNVDLAFL 153 (192)
T ss_pred cccchhhccccchHHHHH----HHHCCCceeccccccccHhHHHH
Confidence 99976432 222222 23456777777777666554443
No 335
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.73 E-value=8.4e-05 Score=78.21 Aligned_cols=134 Identities=18% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..|+||..--.|||||+.+|+...=--+..+-+ ..+..|-+++.+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v-------------------------~ERvMDSnDlEk-------- 50 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEV-------------------------AERVMDSNDLEK-------- 50 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccch-------------------------hhhhcCccchhh--------
Confidence 68899999999999999999998764200000000 011112222211
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..| -++-.+--. |. ++...+.+|||||..++... |.+-++=.|.++|+|++ ..+.-.|..+
T Consensus 51 ERG--ITILaKnTa--v~-~~~~~INIvDTPGHADFGGE-------------VERvl~MVDgvlLlVDA-~EGpMPQTrF 111 (603)
T COG1217 51 ERG--ITILAKNTA--VN-YNGTRINIVDTPGHADFGGE-------------VERVLSMVDGVLLLVDA-SEGPMPQTRF 111 (603)
T ss_pred hcC--cEEEeccce--ee-cCCeEEEEecCCCcCCccch-------------hhhhhhhcceEEEEEEc-ccCCCCchhh
Confidence 112 111111111 22 23467899999998876543 33334456788886654 4444444444
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~ 219 (609)
..++.-..|-+-|+|+||+|.-+...
T Consensus 112 -VlkKAl~~gL~PIVVvNKiDrp~Arp 137 (603)
T COG1217 112 -VLKKALALGLKPIVVINKIDRPDARP 137 (603)
T ss_pred -hHHHHHHcCCCcEEEEeCCCCCCCCH
Confidence 45555567889999999999976553
No 336
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.72 E-value=0.00012 Score=76.34 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHH---Hhh-cCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVR---SYI-EKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~---~yi-~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 209 (609)
..++.||||||...... ...+.+..+.+ ..+ ..++-.+||+ +++. .++++.-++.....-...-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl-~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVL-DATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEE-ECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 35899999999765321 12233333321 222 2466666654 5443 2333334444443335677899
Q ss_pred cccCcCCCCCcHHHHHh
Q 007296 210 TKIDLMDKGTDAVDILE 226 (609)
Q Consensus 210 tK~D~~~~~~~~~~~l~ 226 (609)
||.|....+..+.+++.
T Consensus 267 TKlD~t~~~G~~l~~~~ 283 (318)
T PRK10416 267 TKLDGTAKGGVVFAIAD 283 (318)
T ss_pred ECCCCCCCccHHHHHHH
Confidence 99998877766666653
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.70 E-value=9.1e-05 Score=76.27 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..++++|.+|+|||||+|+|+|...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 5899999999999999999999865
No 338
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.69 E-value=0.00032 Score=64.79 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|.++|..+|||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999764
No 339
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00057 Score=73.46 Aligned_cols=157 Identities=13% Similarity=0.177 Sum_probs=78.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcC---cccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFL---PRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~l---P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
-..|++||..++||||++..|.|...+ +...++.|.-. .+......-..|+..+..+.....+..++...+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~--~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-- 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS--YRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-- 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC--cchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH--
Confidence 458999999999999999999875211 11111111000 00000000022333333333333333333221111
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
-...++.+|||+|..... ....+.+..+. -...+.-.+||+ +++.. .++
T Consensus 267 ---------------------l~~~d~VLIDTaGrsqrd-----~~~~~~l~~l~--~~~~~~~~~LVl-~at~~--~~~ 315 (420)
T PRK14721 267 ---------------------LRGKHMVLIDTVGMSQRD-----QMLAEQIAMLS--QCGTQVKHLLLL-NATSS--GDT 315 (420)
T ss_pred ---------------------hcCCCEEEecCCCCCcch-----HHHHHHHHHHh--ccCCCceEEEEE-cCCCC--HHH
Confidence 112478999999987531 11223333221 112233455544 55432 233
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHh
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
..+.++.+... ...=+|+||.|.......+.+++.
T Consensus 316 ~~~~~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 316 LDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred HHHHHHHhcCC-CCCEEEEEeeeCCCCccHHHHHHH
Confidence 44456666553 345678999999888776777764
No 340
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.67 E-value=9.3e-05 Score=75.06 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
--..+++|..++|||||+|+|.+.
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCch
Confidence 347899999999999999999984
No 341
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.64 E-value=0.00043 Score=75.03 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=46.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||..... ......+..++.. ...+..+.| |++++.. ..+...+++.+...+ ..=+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~~~~L-Vl~a~~~--~~~l~~~~~~f~~~~-~~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPIDVYL-VLSATTK--YEDLKDIYKHFSRLP-LDGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCCeEEE-EEECCCC--HHHHHHHHHHhCCCC-CCEEEEecccc
Confidence 489999999985431 1122333344331 113334444 4555532 234444556666544 24578999999
Q ss_pred CCCCCcHHHHHh
Q 007296 215 MDKGTDAVDILE 226 (609)
Q Consensus 215 ~~~~~~~~~~l~ 226 (609)
........+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 877666666654
No 342
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.00019 Score=75.91 Aligned_cols=173 Identities=18% Similarity=0.278 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++....||..--.|||||-.+|+... |..+. .+.++++-+.++-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~------------------------------Rem~~Q~LDsMdi 51 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSE------------------------------REMRAQVLDSMDI 51 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcCh------------------------------HHHHHHhhhhhhh
Confidence 46677888888999999999997643 11111 1222233222332
Q ss_pred hcCCCCcccCCceEEEEecC--CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSP--NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~--~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
....|-++-...+++..... +...|.||||||..+++-+ |.+.+.-+...+|+| +|.+++..|.
T Consensus 52 ERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE-------------VSRSLAACEGalLvV-DAsQGveAQT 117 (603)
T COG0481 52 ERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-------------VSRSLAACEGALLVV-DASQGVEAQT 117 (603)
T ss_pred HhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE-------------ehhhHhhCCCcEEEE-ECccchHHHH
Confidence 22333445556666665544 3356889999998887543 334445566666654 6677777766
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCc-HHHHHhccccccC-CceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTD-AVDILEGKSYKLR-YPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
..+....++ .+--+|-|+||+|+-....+ +.+.++. .+.+. ..-..+++.++.|+++.++.+...
T Consensus 118 lAN~YlAle-~~LeIiPViNKIDLP~Adpervk~eIe~-~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 118 LANVYLALE-NNLEIIPVLNKIDLPAADPERVKQEIED-IIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHHHHHHH-cCcEEEEeeecccCCCCCHHHHHHHHHH-HhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 544443343 35779999999999654432 2222211 11111 234556777777777766555443
No 343
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=6.2e-05 Score=76.86 Aligned_cols=145 Identities=26% Similarity=0.407 Sum_probs=76.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccc----cccccEEEEEEecCCC-ccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGI----VTRRPLVLQLHKIQEG-KEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~----~Tr~p~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
+++|+|.--+|||||+--|+... |--|.|- .-|.|.+++-.++..- -+.-.| .......+.++-+. .
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~evlGF--d~~g~vVNY~~~~t-----a 240 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGF--DNRGKVVNYAQNMT-----A 240 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhcccc--cccccccchhhccc-----H
Confidence 89999999999999999998765 4444442 2245544442221110 000000 00011111111100 0
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LAT 188 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~ 188 (609)
+. |......-+||+|++|-.+.-.. .|..+ ..| .|++..|+| +|+.+ +++
T Consensus 241 EE----------------i~e~SSKlvTfiDLAGh~kY~~T--------Ti~gL-tgY--~Ph~A~LvV-sA~~Gi~~tT 292 (591)
T KOG1143|consen 241 EE----------------IVEKSSKLVTFIDLAGHAKYQKT--------TIHGL-TGY--TPHFACLVV-SADRGITWTT 292 (591)
T ss_pred HH----------------HHhhhcceEEEeecccchhhhee--------eeeec-ccC--CCceEEEEE-EcCCCCcccc
Confidence 00 11111224689999997654211 00111 122 367776655 55554 556
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCCC
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~ 219 (609)
.+.+-++..++ .|+++++||+|+.++.+
T Consensus 293 rEHLgl~~AL~---iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 293 REHLGLIAALN---IPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HHHHHHHHHhC---CCeEEEEEeeccccchh
Confidence 66666776664 79999999999998754
No 344
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00039 Score=74.16 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=46.2
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc-CCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE-KPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..++.||||||...... +..+.+..+....-. .+.-.+|| ++++.+ ..+....++.+... ...=+|+||.
T Consensus 299 ~~D~VLIDTaGr~~rd~-----~~l~eL~~~~~~~~~~~~~e~~LV-LsAt~~--~~~~~~~~~~f~~~-~~~glIlTKL 369 (432)
T PRK12724 299 GSELILIDTAGYSHRNL-----EQLERMQSFYSCFGEKDSVENLLV-LSSTSS--YHHTLTVLKAYESL-NYRRILLTKL 369 (432)
T ss_pred CCCEEEEeCCCCCccCH-----HHHHHHHHHHHhhcCCCCCeEEEE-EeCCCC--HHHHHHHHHHhcCC-CCCEEEEEcc
Confidence 34889999999764211 122222333221111 23345554 455432 23444455555443 4566789999
Q ss_pred CcCCCCCcHHHHHh
Q 007296 213 DLMDKGTDAVDILE 226 (609)
Q Consensus 213 D~~~~~~~~~~~l~ 226 (609)
|....+..+..++.
T Consensus 370 DEt~~~G~il~i~~ 383 (432)
T PRK12724 370 DEADFLGSFLELAD 383 (432)
T ss_pred cCCCCccHHHHHHH
Confidence 99888776666654
No 345
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0004 Score=75.95 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||..... ....+.+..+ .... ... .+| |++++.. ..++...++.+... ...-+|+||+|.
T Consensus 429 ~DLVLIDTaG~s~~D-----~~l~eeL~~L-~aa~-~~a-~lL-VLpAtss--~~Dl~eii~~f~~~-~~~gvILTKlDE 496 (559)
T PRK12727 429 YKLVLIDTAGMGQRD-----RALAAQLNWL-RAAR-QVT-SLL-VLPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLDE 496 (559)
T ss_pred CCEEEecCCCcchhh-----HHHHHHHHHH-HHhh-cCC-cEE-EEECCCC--hhHHHHHHHHHHhh-CCeEEEEecCcC
Confidence 589999999986421 1122222222 2222 222 223 3455432 33444455555443 457789999999
Q ss_pred CCCCCcHHHHHh
Q 007296 215 MDKGTDAVDILE 226 (609)
Q Consensus 215 ~~~~~~~~~~l~ 226 (609)
......+.+++.
T Consensus 497 t~~lG~aLsv~~ 508 (559)
T PRK12727 497 TGRFGSALSVVV 508 (559)
T ss_pred ccchhHHHHHHH
Confidence 776666666654
No 346
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.61 E-value=0.00016 Score=70.84 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.|+++|..+||||||+++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999864
No 347
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00013 Score=64.93 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc---cchHHHHHHHHhCCCCCceEEEe
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL---ATSDAIKISREVDPRGDRTFGVL 209 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~---~~~~~l~l~~~~d~~~~rti~Vl 209 (609)
.+..+.+||+-|.... +..++-|..+.+++|.||++++.|- +..+-..+..+-.-.+...+++.
T Consensus 60 KNLk~~vwdLggqtSi-------------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSI-------------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCcccc-------------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 4568899999997663 6789999999999999998887652 22333334444444567788899
Q ss_pred cccCcCCCCC--cHHHHHhccccccCC---ceeeEeeCChhhhcccccHHHHH
Q 007296 210 TKIDLMDKGT--DAVDILEGKSYKLRY---PWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 210 tK~D~~~~~~--~~~~~l~~~~~~l~~---g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
||.|....-+ ++...+. ...++. -.+..++..+.+++...++...-
T Consensus 127 nKqD~~~~~t~~E~~~~L~--l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 127 NKQDYSGALTRSEVLKMLG--LQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRP 177 (182)
T ss_pred ccccchhhhhHHHHHHHhC--hHHHhhheeEEEeeccccccCCcHHHHHHHHH
Confidence 9999865433 2222222 122222 22333344456777666666543
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00066 Score=72.40 Aligned_cols=151 Identities=18% Similarity=0.320 Sum_probs=78.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCC--------ccchhhccCCCCccCChHHHHHHH
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEG--------KEYAEFMHLPRKRFNDFAAVRKEI 106 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~i 106 (609)
..|++||.+|+||||.+-.|...-.+ .+ .+....+.+...+.- ..|++.+..|-....++.++...+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~-~~----~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGI-NS----DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh-hh----ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH
Confidence 47899999999999999988753110 00 001112222222221 223333322222223444443322
Q ss_pred HHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc---CCceEEEEEecCC
Q 007296 107 SDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE---KPNCIILAISPAN 183 (609)
Q Consensus 107 ~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~---~~~~iIL~v~~a~ 183 (609)
.. . ...++.||||||.... +.. .+.++ ..++. .+.-++| |.+++
T Consensus 250 ~~----~-------------------~~~DlVLIDTaGr~~~-------~~~-~l~el-~~~l~~~~~~~e~~L-Vlsat 296 (388)
T PRK12723 250 TQ----S-------------------KDFDLVLVDTIGKSPK-------DFM-KLAEM-KELLNACGRDAEFHL-AVSST 296 (388)
T ss_pred HH----h-------------------CCCCEEEEcCCCCCcc-------CHH-HHHHH-HHHHHhcCCCCeEEE-EEcCC
Confidence 21 1 1248999999997642 111 12222 22222 2223445 45665
Q ss_pred CcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHh
Q 007296 184 QDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 184 ~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
.. ..+..+.++.+.+. ..+=+|+||.|....+..+.+++.
T Consensus 297 ~~--~~~~~~~~~~~~~~-~~~~~I~TKlDet~~~G~~l~~~~ 336 (388)
T PRK12723 297 TK--TSDVKEIFHQFSPF-SYKTVIFTKLDETTCVGNLISLIY 336 (388)
T ss_pred CC--HHHHHHHHHHhcCC-CCCEEEEEeccCCCcchHHHHHHH
Confidence 43 23333455555543 356678999999888777777764
No 349
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.53 E-value=0.0006 Score=66.27 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=31.9
Q ss_pred EEEecccCcCCC-CCcH---HHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 206 FGVLTKIDLMDK-GTDA---VDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 206 i~VltK~D~~~~-~~~~---~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++|+||+|+.+. +.+. .+.++ .......++.+++.+++++++.++.+.
T Consensus 141 ~~~~~k~d~~~~~~~~~~~~~~~~~--~~~~~~~i~~~Sa~~g~gi~el~~~i~ 192 (199)
T TIGR00101 141 LLVINKIDLAPMVGADLGVMERDAK--KMRGEKPFIFTNLKTKEGLDTVIDWIE 192 (199)
T ss_pred EEEEEhhhccccccccHHHHHHHHH--HhCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 899999999853 2222 22222 123357789999999998887776554
No 350
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00051 Score=75.87 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
+.-|-++|+|.--+|||-||..|-|.++---.+|-.| ..-+..|.....++. .|.
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggit---------------------qqIgAt~fp~~ni~e----~tk 527 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGIT---------------------QQIGATYFPAENIRE----KTK 527 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhcccccccccccee---------------------eeccccccchHHHHH----HHH
Confidence 4789999999999999999999998765222222222 122233333333333 222
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.+...++ ..-..|.+.+|||||...+ .++-.....-+|.+||+| +...++..+..
T Consensus 528 ~~~~~~K-----------~~~kvPg~lvIdtpghEsF-------------tnlRsrgsslC~~aIlvv-dImhGlepqti 582 (1064)
T KOG1144|consen 528 ELKKDAK-----------KRLKVPGLLVIDTPGHESF-------------TNLRSRGSSLCDLAILVV-DIMHGLEPQTI 582 (1064)
T ss_pred HHHhhhh-----------hhcCCCeeEEecCCCchhh-------------hhhhhccccccceEEEEe-ehhccCCcchh
Confidence 2221111 0124678999999996553 334344455689898876 44455555543
Q ss_pred HHHHHHhCCCCCceEEEecccCcC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
.-+..+.....|+|+.|||+|.+
T Consensus 583 -ESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 -ESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred -HHHHHHHhcCCCeEEeehhhhhh
Confidence 23344455678999999999986
No 351
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.50 E-value=0.0001 Score=74.29 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.-+.+.|||-||+|||||+||+-...
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 35899999999999999999987654
No 352
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00037 Score=73.42 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=63.5
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEecccCc
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLTKIDL 214 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~D~ 214 (609)
.++|||.||.-+ .+.+|+. -+...|+.+|+| +++.++..+... .+.-+|-.|.+ -++|+||+|.
T Consensus 51 ~~~fIDvpgh~~------------~i~~mia-g~~~~d~alLvV-~~deGl~~qtgE-hL~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 51 VMGFIDVPGHPD------------FISNLLA-GLGGIDYALLVV-AADEGLMAQTGE-HLLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred ceEEeeCCCcHH------------HHHHHHh-hhcCCceEEEEE-eCccCcchhhHH-HHHHHHhcCCCceEEEEecccc
Confidence 789999999643 3344443 244577777754 666555555432 33334545544 5999999999
Q ss_pred CCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 215 MDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 215 ~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.++.. ...+++.... --...++.++..+++|++++...+..+.
T Consensus 116 ~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 116 VDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 97642 1123333222 1114456677777788877766655544
No 353
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=97.47 E-value=0.096 Score=56.76 Aligned_cols=29 Identities=45% Similarity=0.627 Sum_probs=26.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 31 WDSLPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 31 ~~~lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..+.-.|+|.|+||+|||||||.|.|-.|
T Consensus 34 Gl~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 34 GLSYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred CcceeEEEEecCcccchHHHHHHHhccCh
Confidence 35788999999999999999999999987
No 354
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00042 Score=72.71 Aligned_cols=137 Identities=15% Similarity=0.257 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCC--CccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQE--GKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
.-...+||-.|-||||||-|.|+= | |-.-+.+.+++-+++.. .++|. +++
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLl--f-----GgaIq~AG~Vk~rk~~~~a~SDWM--------------~iE------- 62 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLL--F-----GGAIQEAGTVKGRKSGKHAKSDWM--------------EIE------- 62 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHH--h-----cchhhhcceeeeccCCcccccHHH--------------HHH-------
Confidence 346789999999999999999862 1 22223333333222211 12222 221
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
+ .+|+|-..-.+... .+..-+.|.||||..+.+.. +.+-+.-.|+.++|+++| .++..+.
T Consensus 63 -k----qRGISVtsSVMqF~-Y~~~~iNLLDTPGHeDFSED-------------TYRtLtAvDsAvMVIDaA-KGiE~qT 122 (528)
T COG4108 63 -K----QRGISVTSSVMQFD-YADCLVNLLDTPGHEDFSED-------------TYRTLTAVDSAVMVIDAA-KGIEPQT 122 (528)
T ss_pred -H----hcCceEEeeEEEec-cCCeEEeccCCCCccccchh-------------HHHHHHhhheeeEEEecc-cCccHHH
Confidence 1 12333222222222 23446789999998776422 445566778887766554 4565554
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+++..-..-.+.|++-.+||+|.....
T Consensus 123 -~KLfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 123 -LKLFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred -HHHHHHHhhcCCceEEEeeccccccCC
Confidence 467777777899999999999986543
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.46 E-value=0.0016 Score=66.41 Aligned_cols=83 Identities=20% Similarity=0.297 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHH---Hhhc-CCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVR---SYIE-KPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~---~yi~-~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 210 (609)
.++.||||||.... .......+..+.. ..+. .++.++||+ +++. .++++..+......-...-+|+|
T Consensus 155 ~D~ViIDT~G~~~~-----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl-~a~~---~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 155 IDVVLIDTAGRLQN-----KVNLMDELKKIKRVIKKVDKDAPDEVLLVL-DATT---GQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred CCEEEEeCCCCCcc-----hHHHHHHHHHHHHHHhcccCCCCceEEEEE-ECCC---CHHHHHHHHHHHhhCCCCEEEEE
Confidence 58999999997652 1122233333322 1111 377777755 4443 23333344443332245778899
Q ss_pred ccCcCCCCCcHHHHHh
Q 007296 211 KIDLMDKGTDAVDILE 226 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~ 226 (609)
|+|....+..+..+..
T Consensus 226 KlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 226 KLDGTAKGGIILSIAY 241 (272)
T ss_pred ccCCCCCccHHHHHHH
Confidence 9999887766666654
No 356
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00049 Score=74.63 Aligned_cols=115 Identities=18% Similarity=0.264 Sum_probs=63.3
Q ss_pred CcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c--------cc
Q 007296 118 KAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L--------AT 188 (609)
Q Consensus 118 ~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~--------~~ 188 (609)
+||+-+.-...+. ++...+||+|.||.-.+- .+|+ .-+..+|..||||+. +.+ + .+
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhkdFi------------~nmi-~g~sqaD~avLvvd~-s~~~FE~gfd~~gQt 303 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHKDFI------------PNMI-SGASQADVAVLVVDA-STGEFESGFDPGGQT 303 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCccccc------------hhhh-ccccccceEEEEEEC-CcchhhhccCCCCch
Confidence 3444433333333 555689999999943331 2232 224568888887654 432 1 11
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcc---------ccc-cCCceeeEeeCChhhhcc
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGK---------SYK-LRYPWIGVVNRSQADINK 249 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~---------~~~-l~~g~~~v~~~s~~~i~~ 249 (609)
.+...+++.+. -.-.|+++||+|+++=..+..+.+.+. .+. -...|++++..+++++..
T Consensus 304 rEha~llr~Lg--i~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 304 REHALLLRSLG--ISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHcC--cceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 23334555554 256888999999996443322222221 111 124677777777776543
No 357
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.44 E-value=0.0005 Score=61.08 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
=-+|...|--||||+|+|..|.+.+. +. .|
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~--~h---lt--------------------------------------------- 46 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDP--RH---LT--------------------------------------------- 46 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCCh--hh---cc---------------------------------------------
Confidence 45899999999999999999999874 21 11
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH-
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI- 192 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l- 192 (609)
+++||+... +.+.....|++||..|... |+..+.+|..+.|.+|.|++++.......-..
T Consensus 47 --pT~GFn~k~----v~~~g~f~LnvwDiGGqr~-------------IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~e 107 (185)
T KOG0074|consen 47 --PTNGFNTKK----VEYDGTFHLNVWDIGGQRG-------------IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEE 107 (185)
T ss_pred --ccCCcceEE----EeecCcEEEEEEecCCccc-------------cchhhhhhhhccceEEEEEeCCchHhHHHHHHH
Confidence 234455333 3344456899999998654 36778999999999999877543322222222
Q ss_pred --HHHHHhCCCCCceEEEecccCcCCCC
Q 007296 193 --KISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 193 --~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
++..+..-...|+.+-.||-|++-..
T Consensus 108 l~ELleeeKl~~vpvlIfankQdlltaa 135 (185)
T KOG0074|consen 108 LVELLEEEKLAEVPVLIFANKQDLLTAA 135 (185)
T ss_pred HHHHhhhhhhhccceeehhhhhHHHhhc
Confidence 23344444456777778999986543
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=97.42 E-value=0.00085 Score=72.55 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=48.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||-... ++.+...+..+. ..+ .++.++||+. +.. .+++.+.++.+...-..+-+|+||.|.
T Consensus 184 ~DvVIIDTaGrl~~-----d~~lm~eL~~i~-~~v-~p~evllVld-a~~---gq~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 184 YDVVIVDTAGRLHI-----DEELMDELKAIK-AAV-NPDEILLVVD-AMT---GQDAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred CCEEEEeCCCCccc-----CHHHHHHHHHHH-Hhh-CCCeEEEEEe-ccc---HHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 58899999997542 112233332222 222 5666766554 432 366667777766444456788999998
Q ss_pred CCCCCcHHHHH
Q 007296 215 MDKGTDAVDIL 225 (609)
Q Consensus 215 ~~~~~~~~~~l 225 (609)
...+..+..+.
T Consensus 253 ~~rgG~alsi~ 263 (433)
T PRK10867 253 DARGGAALSIR 263 (433)
T ss_pred cccccHHHHHH
Confidence 76665555554
No 359
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.39 E-value=0.00099 Score=72.22 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=49.2
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
++.||||||.... ++++.+.+..+ ..+..++.++|++. +..+ +++.+.++.+...-..+-+|+||.|..
T Consensus 177 DvVIIDTAGr~~~-----d~~lm~El~~l--~~~~~pdevlLVvd-a~~g---q~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHAL-----EEDLIEEMKEI--KEAVKPDEVLLVID-ATIG---QQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccc-----hHHHHHHHHHH--HHHhcccceeEEEe-cccc---HHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 8899999997653 12222223222 12335777777654 4442 566667777655434566789999998
Q ss_pred CCCCcHHHHHh
Q 007296 216 DKGTDAVDILE 226 (609)
Q Consensus 216 ~~~~~~~~~l~ 226 (609)
..+..+..+..
T Consensus 246 a~~G~~ls~~~ 256 (437)
T PRK00771 246 AKGGGALSAVA 256 (437)
T ss_pred CcccHHHHHHH
Confidence 77766666643
No 360
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.38 E-value=7.5e-05 Score=74.02 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
+-+.|.|-|.|++|||||+++|...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999753
No 361
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.37 E-value=0.002 Score=67.89 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=91.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEE-EEecCC---CccchhhccCCCCccCChHHHHHHHHHH
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQ-LHKIQE---GKEYAEFMHLPRKRFNDFAAVRKEISDE 109 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~-l~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 109 (609)
-.-|++||+.|+||||.|--|..+.++--+ --+..+.+. -.+.+. -+.|+..+..|-....+..++.++|..-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~---~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK---KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc---CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 567999999999999999988876320000 011111111 001111 1567888888877778888777766543
Q ss_pred hhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCC-ceEEEEEecCCCcccc
Q 007296 110 TDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKP-NCIILAISPANQDLAT 188 (609)
Q Consensus 110 ~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~-~~iIL~v~~a~~d~~~ 188 (609)
. ..++.||||.|-... ....+.+| ..|+... +.-+..|.+++. ..
T Consensus 280 ~-----------------------~~d~ILVDTaGrs~~--------D~~~i~el-~~~~~~~~~i~~~Lvlsat~--K~ 325 (407)
T COG1419 280 R-----------------------DCDVILVDTAGRSQY--------DKEKIEEL-KELIDVSHSIEVYLVLSATT--KY 325 (407)
T ss_pred h-----------------------cCCEEEEeCCCCCcc--------CHHHHHHH-HHHHhccccceEEEEEecCc--ch
Confidence 2 238899999997653 22333333 3455543 333444566653 23
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHh
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILE 226 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~ 226 (609)
.+...+...+...+... +++||.|....-.+...++.
T Consensus 326 ~dlkei~~~f~~~~i~~-~I~TKlDET~s~G~~~s~~~ 362 (407)
T COG1419 326 EDLKEIIKQFSLFPIDG-LIFTKLDETTSLGNLFSLMY 362 (407)
T ss_pred HHHHHHHHHhccCCcce-eEEEcccccCchhHHHHHHH
Confidence 44445666666554433 46899998876556666664
No 362
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.36 E-value=0.0012 Score=62.49 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.++||||..... .+....+..+. ....++.+++++.+ .. ..+..+.+..+.....-.-+|+||+|.
T Consensus 83 ~d~viiDt~g~~~~~-----~~~l~~l~~l~--~~~~~~~~~lVv~~-~~---~~~~~~~~~~~~~~~~~~~viltk~D~ 151 (173)
T cd03115 83 FDVVIVDTAGRLQID-----ENLMEELKKIK--RVVKPDEVLLVVDA-MT---GQDAVNQAKAFNEALGITGVILTKLDG 151 (173)
T ss_pred CCEEEEECcccchhh-----HHHHHHHHHHH--hhcCCCeEEEEEEC-CC---ChHHHHHHHHHHhhCCCCEEEEECCcC
Confidence 478899999976431 11222332322 12347777776654 32 223334444443222256788999999
Q ss_pred CCCCCcHHHHH
Q 007296 215 MDKGTDAVDIL 225 (609)
Q Consensus 215 ~~~~~~~~~~l 225 (609)
........++.
T Consensus 152 ~~~~g~~~~~~ 162 (173)
T cd03115 152 DARGGAALSIR 162 (173)
T ss_pred CCCcchhhhhH
Confidence 88776555543
No 363
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0045 Score=62.51 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
+-+.|.|-|.|+||||||+++|.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHH
Confidence 5779999999999999999999743
No 364
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.0046 Score=60.28 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=55.8
Q ss_pred CCcEEEeC-CCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH-HHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDL-PGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD-AIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDt-PGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~-~l~l~~~~d~~~~rti~VltK~ 212 (609)
.++.+||| +|+... -+.-++..|.+|.|+.|+-..+.+++ ..+++.++. -+|+.+|+||+
T Consensus 134 ~e~VivDtEAGiEHf----------------gRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv 195 (255)
T COG3640 134 YEVVIVDTEAGIEHF----------------GRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKV 195 (255)
T ss_pred CcEEEEecccchhhh----------------ccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeec
Confidence 36789998 676543 33456789999888877665555544 223555544 28999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChh
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQA 245 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~ 245 (609)
|.. . ..+......+++...++.+.+++
T Consensus 196 ~e~--e----~~~~~~~~~~~~~vlg~iP~d~~ 222 (255)
T COG3640 196 DEE--E----ELLRELAEELGLEVLGVIPYDPE 222 (255)
T ss_pred cch--h----HHHHhhhhccCCeEEEEccCCHH
Confidence 865 1 12222334556677788887653
No 365
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.26 E-value=0.0012 Score=80.46 Aligned_cols=56 Identities=25% Similarity=0.358 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCccc
Q 007296 4 LITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRG 63 (609)
Q Consensus 4 l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~ 63 (609)
+-.+-.+++++...|.......+ .....||=.+|||+++|||||+|+.- |.+| |-.
T Consensus 83 ~~~l~~~~~~a~~~Lk~~~~~~~--~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 83 IRELRARFNEALALLKRSRLGGR--RYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHhhccccCc--hhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 44566777777777754321111 11258999999999999999999998 8875 554
No 366
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0013 Score=65.59 Aligned_cols=131 Identities=16% Similarity=0.314 Sum_probs=75.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-.|..||....|||||--||++.-. -.+ ...+.+++++.+.-++ +
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la-~~~-----------------------------~~~~~~y~~id~aPeE---k-- 57 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLA-KKG-----------------------------GAEAKAYDQIDNAPEE---K-- 57 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHH-hhc-----------------------------cccccchhhhccCchH---h--
Confidence 3688999999999999999997511 111 1122233333221111 1
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-chHHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAIK 193 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-~~~~l~ 193 (609)
..+++-++-+++... ...++..||.||..+ .+++|+.... +.|..||+|.++..... +-+-.-
T Consensus 58 --~rGITIntahveyet-~~rhyahVDcPGHaD------------YvKNMItgAa-qmDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 58 --ARGITINTAHVEYET-ANRHYAHVDCPGHAD------------YVKNMITGAA-QMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred --hcCceeccceeEEec-CCceEEeccCCChHH------------HHHHHhhhHH-hcCccEEEEEcCCCCCCcchhhhh
Confidence 123333333444333 346899999999543 3466665543 45666777655443332 223333
Q ss_pred HHHHhCCCCCceEEEecccCcCCCC
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+++++.- ..+++++||+|+++..
T Consensus 122 larqvGv--p~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQVGV--PYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhcCC--cEEEEEEecccccCcH
Confidence 6777642 3678889999999844
No 367
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.19 E-value=0.00048 Score=71.55 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGS 64 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~ 64 (609)
.--++.|||-||+|||||||+|......|+|.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~ 282 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGN 282 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCC
Confidence 45689999999999999999999887755554
No 368
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.18 E-value=0.0023 Score=69.18 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=49.3
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||.... +......+..+.. .-.++.++||+. +.. .+++.+.++.+...-..+=+|+||+|.
T Consensus 183 ~DvVIIDTaGr~~~-----d~~l~~eL~~i~~--~~~p~e~lLVvd-a~t---gq~~~~~a~~f~~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQI-----DEELMEELAAIKE--ILNPDEILLVVD-AMT---GQDAVNTAKTFNERLGLTGVVLTKLDG 251 (428)
T ss_pred CCEEEEeCCCcccc-----CHHHHHHHHHHHH--hhCCceEEEEEe-ccc---hHHHHHHHHHHHhhCCCCEEEEeCccC
Confidence 57899999997542 1223333333322 335777777664 442 366777777766433456777999997
Q ss_pred CCCCCcHHHHHh
Q 007296 215 MDKGTDAVDILE 226 (609)
Q Consensus 215 ~~~~~~~~~~l~ 226 (609)
...+..+..+..
T Consensus 252 ~~~~G~~lsi~~ 263 (428)
T TIGR00959 252 DARGGAALSVRS 263 (428)
T ss_pred cccccHHHHHHH
Confidence 766655555543
No 369
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.16 E-value=0.49 Score=55.12 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.2
Q ss_pred EcCCCCCHHHHHHHhhCCCcCccc
Q 007296 40 VGGQSSGKSSVLESVVGKDFLPRG 63 (609)
Q Consensus 40 vG~~ssGKSSllnal~g~~~lP~~ 63 (609)
.|.||+|||||||.|.|..| ++-
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~m 23 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DVM 23 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-ccc
Confidence 49999999999999999986 443
No 370
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0014 Score=66.29 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=32.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQE 81 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 81 (609)
.|.+||.--.|||||..||+|... ....--.++.+.++|.+.+.
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT--~~hseElkRgitIkLGYAd~ 55 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT--DRHSEELKRGITIKLGYADA 55 (415)
T ss_pred Eeeeeeecccchhhheehhhceee--echhHHHhcCcEEEeccccC
Confidence 578999999999999999999742 11122346677777766554
No 371
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0022 Score=58.80 Aligned_cols=129 Identities=17% Similarity=0.277 Sum_probs=80.8
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhcc
Q 007296 11 IQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMH 90 (609)
Q Consensus 11 lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~ 90 (609)
..+++..+|- +-+-..+++.|--||||||||+-|-..+. +.-.+|-.||.
T Consensus 7 F~~VLq~LgL----------~kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPTS----------------- 56 (193)
T KOG0077|consen 7 FSSVLQFLGL----------YKKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTS----------------- 56 (193)
T ss_pred HHHHHHHHHH----------hccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCCh-----------------
Confidence 3456777773 23678999999999999999999965542 11233433310
Q ss_pred CCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc
Q 007296 91 LPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE 170 (609)
Q Consensus 91 ~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~ 170 (609)
+. + .| .....|-+|+-|-... +...++|+.
T Consensus 57 --------------------E~------------l--~I---g~m~ftt~DLGGH~qA-------------rr~wkdyf~ 86 (193)
T KOG0077|consen 57 --------------------EE------------L--SI---GGMTFTTFDLGGHLQA-------------RRVWKDYFP 86 (193)
T ss_pred --------------------HH------------h--ee---cCceEEEEccccHHHH-------------HHHHHHHHh
Confidence 00 0 01 1346788999996542 778899999
Q ss_pred CCceEEEEEecCCCccc-chH-HHH-HHHHhCCCCCceEEEecccCcCCCCC
Q 007296 171 KPNCIILAISPANQDLA-TSD-AIK-ISREVDPRGDRTFGVLTKIDLMDKGT 219 (609)
Q Consensus 171 ~~~~iIL~v~~a~~d~~-~~~-~l~-l~~~~d~~~~rti~VltK~D~~~~~~ 219 (609)
.+|+|+..|+.+....- .+. .++ +.....-...|.++..||+|.-....
T Consensus 87 ~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 87 QVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred hhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 99999988776543211 111 111 11111123578999999999876543
No 372
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.07 E-value=0.0041 Score=68.06 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=47.6
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
++.+|||+|...... .+.+.+. ++.... .+.-.+|+ .++..+. .+..+.++.+... ..+-+|+||+|..
T Consensus 336 d~VLIDTaGr~~~d~-----~~~e~~~-~l~~~~-~p~e~~LV-LdAt~~~--~~l~~i~~~f~~~-~~~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRDR-----MVSEQIA-MLHGAG-APVKRLLL-LNATSHG--DTLNEVVQAYRGP-GLAGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhhH-----HHHHHHH-HHhccC-CCCeeEEE-EeCCCcH--HHHHHHHHHhccC-CCCEEEEeCCCCc
Confidence 688999999764210 1111111 111111 13334454 4554322 3333456666554 3566789999998
Q ss_pred CCCCcHHHHHhccccccCCceeeE
Q 007296 216 DKGTDAVDILEGKSYKLRYPWIGV 239 (609)
Q Consensus 216 ~~~~~~~~~l~~~~~~l~~g~~~v 239 (609)
.....+.+++.. ..+.+-|+.+
T Consensus 405 ~~~G~~l~i~~~--~~lPI~yvt~ 426 (484)
T PRK06995 405 ASLGGALDVVIR--YKLPLHYVSN 426 (484)
T ss_pred ccchHHHHHHHH--HCCCeEEEec
Confidence 877767777642 3333444443
No 373
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0019 Score=69.34 Aligned_cols=71 Identities=18% Similarity=0.381 Sum_probs=44.7
Q ss_pred cCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCC-CceEEEe
Q 007296 131 SPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRG-DRTFGVL 209 (609)
Q Consensus 131 ~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~-~rti~Vl 209 (609)
+.....+||...|. . + ..|+ ...+-+|.++| ++++|.++..... .++.-+.+.| .|++||+
T Consensus 109 sgK~RRiTflEcp~--D---------l----~~mi-DvaKIaDLVlL-lIdgnfGfEMETm-EFLnil~~HGmPrvlgV~ 170 (1077)
T COG5192 109 SGKTRRITFLECPS--D---------L----HQMI-DVAKIADLVLL-LIDGNFGFEMETM-EFLNILISHGMPRVLGVV 170 (1077)
T ss_pred ecceeEEEEEeChH--H---------H----HHHH-hHHHhhheeEE-EeccccCceehHH-HHHHHHhhcCCCceEEEE
Confidence 34445788888873 1 1 2222 22344676665 5678887766554 3555555555 5789999
Q ss_pred cccCcCCCCC
Q 007296 210 TKIDLMDKGT 219 (609)
Q Consensus 210 tK~D~~~~~~ 219 (609)
|..|+....+
T Consensus 171 ThlDlfk~~s 180 (1077)
T COG5192 171 THLDLFKNPS 180 (1077)
T ss_pred eecccccChH
Confidence 9999987654
No 374
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.98 E-value=0.00082 Score=65.87 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
..++-++|-||+||||++..|+|.. -|+.++
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~-s~vasy 89 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF-SEVAAY 89 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC-Cccccc
Confidence 3478889999999999999999985 355444
No 375
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0017 Score=72.32 Aligned_cols=129 Identities=24% Similarity=0.277 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
....|++|..--.|||||..+|+-..- -+..|.+..+|+-.+.+. + .+..
T Consensus 8 ~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfld~red----------------------e---q~rg 57 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFLDTRED----------------------E---QTRG 57 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeeccccch----------------------h---hhhc
Confidence 577899999999999999999986542 356677777774322111 0 0111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
++=+..++| + .+ ...-+.|||+||..++.. .+.+..+=+|..++ .+++..++..+..
T Consensus 58 itmkss~is-----~-~~--~~~~~nlidspghvdf~s-------------evssas~l~d~alv-lvdvvegv~~qt~- 114 (887)
T KOG0467|consen 58 ITMKSSAIS-----L-LH--KDYLINLIDSPGHVDFSS-------------EVSSASRLSDGALV-LVDVVEGVCSQTY- 114 (887)
T ss_pred eeeeccccc-----c-cc--CceEEEEecCCCccchhh-------------hhhhhhhhcCCcEE-EEeeccccchhHH-
Confidence 111112222 1 11 223578999999988743 34444455565533 4566666666654
Q ss_pred HHHHHhCCCCCceEEEecccCc
Q 007296 193 KISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~ 214 (609)
.+.|+.--.|.+.|.||||+|.
T Consensus 115 ~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 115 AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred HHHHHHHHccCceEEEEehhhh
Confidence 4788777778999999999994
No 376
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0056 Score=62.39 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCC---ceEEEEEecCCCcccchHHHH--HHHHhCCCCCceEEEe
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKP---NCIILAISPANQDLATSDAIK--ISREVDPRGDRTFGVL 209 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~---~~iIL~v~~a~~d~~~~~~l~--l~~~~d~~~~rti~Vl 209 (609)
.+++|||.||. ..+++..|..+ |..+| |+++..+..++.+.- +...+. ...++|+
T Consensus 70 lq~tlvDCPGH----------------asLIRtiiggaqiiDlm~l-viDv~kG~QtQtAEcLiig~~~c---~klvvvi 129 (522)
T KOG0461|consen 70 LQFTLVDCPGH----------------ASLIRTIIGGAQIIDLMIL-VIDVQKGKQTQTAECLIIGELLC---KKLVVVI 129 (522)
T ss_pred ceeEEEeCCCc----------------HHHHHHHHhhhheeeeeeE-EEehhcccccccchhhhhhhhhc---cceEEEE
Confidence 46799999995 34555555554 44444 456666666665432 333333 5688999
Q ss_pred cccCcCCCCC
Q 007296 210 TKIDLMDKGT 219 (609)
Q Consensus 210 tK~D~~~~~~ 219 (609)
||+|..+++.
T Consensus 130 nkid~lpE~q 139 (522)
T KOG0461|consen 130 NKIDVLPENQ 139 (522)
T ss_pred eccccccchh
Confidence 9999988754
No 377
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.70 E-value=0.00092 Score=68.11 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
....|.|+|.+||||||||+.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999875
No 378
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.059 Score=57.32 Aligned_cols=79 Identities=18% Similarity=0.323 Sum_probs=53.9
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||.|=... .+++-+.+..+ +-+-+|+-++||+++.. -|++.+.|+.++..-.=|=+|+||.|-
T Consensus 183 ~DvvIvDTAGRl~i-----de~Lm~El~~I--k~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 183 YDVVIVDTAGRLHI-----DEELMDELKEI--KEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred CCEEEEeCCCcccc-----cHHHHHHHHHH--HhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEcccC
Confidence 48899999996553 22233333222 33457888888776543 578888898888776677889999998
Q ss_pred CCCCCcHHHH
Q 007296 215 MDKGTDAVDI 224 (609)
Q Consensus 215 ~~~~~~~~~~ 224 (609)
-.+|.-++.+
T Consensus 252 daRGGaALS~ 261 (451)
T COG0541 252 DARGGAALSA 261 (451)
T ss_pred CCcchHHHhh
Confidence 7777644443
No 379
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.018 Score=59.17 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCc-CcccccccccccEEEEEEecCCCccchhhc------cCCCCccCChHHHHHH
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDF-LPRGSGIVTRRPLVLQLHKIQEGKEYAEFM------HLPRKRFNDFAAVRKE 105 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~ 105 (609)
.+-+++-||.---||||||-+|+--.- ++.+ -...+ +.......||+-+-+-
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eD---------------------Qla~l~~dS~~~~t~g~~~D~ALLvDG 63 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYED---------------------QLASLERDSKRKGTQGEKIDLALLVDG 63 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHH---------------------HHHHHhcccccccCCCCccchhhhhhh
Confidence 577899999999999999999875321 0100 00111 1222334566666665
Q ss_pred HHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc
Q 007296 106 ISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD 185 (609)
Q Consensus 106 i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d 185 (609)
++.+.+ .| ++-+ +....++.....+.+.||||..+. .++|+.. ..-+|..|++| +|..+
T Consensus 64 L~AERE--QG----ITID-VAYRyFsT~KRkFIiADTPGHeQY------------TRNMaTG-ASTadlAIlLV-DAR~G 122 (431)
T COG2895 64 LEAERE--QG----ITID-VAYRYFSTEKRKFIIADTPGHEQY------------TRNMATG-ASTADLAILLV-DARKG 122 (431)
T ss_pred hHHHHh--cC----ceEE-EEeeecccccceEEEecCCcHHHH------------hhhhhcc-cccccEEEEEE-ecchh
Confidence 554432 23 2211 122334445568999999996543 2444432 23467777655 55555
Q ss_pred ccchHHHH--HHHHhCCCCCc-eEEEecccCcCCCCCc
Q 007296 186 LATSDAIK--ISREVDPRGDR-TFGVLTKIDLMDKGTD 220 (609)
Q Consensus 186 ~~~~~~l~--l~~~~d~~~~r-ti~VltK~D~~~~~~~ 220 (609)
+..|.-.. ++.. .|.| +++.+||+|+++-..+
T Consensus 123 vl~QTrRHs~I~sL---LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 123 VLEQTRRHSFIASL---LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred hHHHhHHHHHHHHH---hCCcEEEEEEeeecccccCHH
Confidence 55544221 2222 3555 5666999999986543
No 380
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.36 E-value=0.0064 Score=56.40 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=54.7
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEe
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 240 (609)
++.+.+++++++|.+|++++ ++......+ ..+.+.+...+.|.++|+||+|+.+... ..+... ........++.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D-~~~~~~~~~-~~l~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~-~~~~~~~~~~~iS 77 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLD-ARDPELTRS-RKLERYVLELGKKLLIVLNKADLVPKEV-LEKWKS-IKESEGIPVVYVS 77 (156)
T ss_pred HHHHHHHHHhhCCEEEEEee-CCCCcccCC-HHHHHHHHhCCCcEEEEEEhHHhCCHHH-HHHHHH-HHHhCCCcEEEEE
Confidence 46788889999998887665 443222222 2344444445789999999999974321 111110 0011223456777
Q ss_pred eCChhhhcccccHHHHH
Q 007296 241 NRSQADINKSVDMIAAR 257 (609)
Q Consensus 241 ~~s~~~i~~~~~~~~~~ 257 (609)
+.++.+++++.......
T Consensus 78 a~~~~gi~~L~~~l~~~ 94 (156)
T cd01859 78 AKERLGTKILRRTIKEL 94 (156)
T ss_pred ccccccHHHHHHHHHHH
Confidence 77777777666555443
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=96.34 E-value=0.0071 Score=64.25 Aligned_cols=24 Identities=25% Similarity=0.702 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
.++++|.+|+|||||+|+|+|...
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcc
Confidence 799999999999999999999753
No 382
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.017 Score=57.30 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=76.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-.|..||..+-|||||++.|.+..| ++.++|..--.+.|+.. |-.+.
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~------------------------------Tyelq 89 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN------------------------------TYELQ 89 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc------------------------------hhhhh
Confidence 4689999999999999999999876 12223321111111100 00000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCC-CCccchHHHHHHHHHHhhc---------------CCceEEEE
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVD-GQPESIVQDIENMVRSYIE---------------KPNCIILA 178 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~---------------~~~~iIL~ 178 (609)
. +.-...|++|||-|+.+.-.. +.-+-+.+.+......|++ .-++.+.+
T Consensus 90 E---------------snvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYF 154 (406)
T KOG3859|consen 90 E---------------SNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYF 154 (406)
T ss_pred h---------------cCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEE
Confidence 0 111236899999998764332 2233355555555555543 13444555
Q ss_pred EecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 179 ISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 179 v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+.|....+-.-+-. ..+.+|. ...+|-||-|.|.+.+.
T Consensus 155 I~PTGH~LKslDLv-tmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 155 ISPTGHSLKSLDLV-TMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred ecCCCcchhHHHHH-HHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 66766555444432 4566664 36788899999987654
No 383
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.021 Score=59.46 Aligned_cols=136 Identities=17% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
.++..|.|+..--+||+|.-++|+-..=.-++.|- . ..+...+||-.+..
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~------------v-----------ddgdtvtdfla~er------- 84 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGD------------V-----------DDGDTVTDFLAIER------- 84 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccc------------c-----------CCCchHHHHHHHHH-------
Confidence 35668999999999999999998743210011110 0 12333445544322
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
..| ..+-...+.+ .+....+.+|||||..++... |.+.++--|.++ +|.+++.+...+.
T Consensus 85 -erg--itiqsaav~f---dwkg~rinlidtpghvdf~le-------------verclrvldgav-av~dasagve~qt- 143 (753)
T KOG0464|consen 85 -ERG--ITIQSAAVNF---DWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGAV-AVFDASAGVEAQT- 143 (753)
T ss_pred -hcC--ceeeeeeeec---ccccceEeeecCCCcceEEEE-------------HHHHHHHhcCeE-EEEeccCCcccce-
Confidence 112 2222223332 344567899999998876544 334444446564 4556666665544
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+..-++.+....|.+..+||+|.....
T Consensus 144 ltvwrqadk~~ip~~~finkmdk~~an 170 (753)
T KOG0464|consen 144 LTVWRQADKFKIPAHCFINKMDKLAAN 170 (753)
T ss_pred eeeehhccccCCchhhhhhhhhhhhhh
Confidence 456788888899999999999987543
No 384
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.19 E-value=0.029 Score=53.89 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcH---HHHH---hccccccC-
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDA---VDIL---EGKSYKLR- 233 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~---~~~l---~~~~~~l~- 233 (609)
++.++..|+++++.++++++....+..... .+... ..+.++++|+||+|+.++.... .... ........
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~--~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIP--RLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccch--hHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 688899999999999887764332211111 12121 2468999999999998644321 1121 00011111
Q ss_pred CceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCcc--ccccChHHHHHHHHH
Q 007296 234 YPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHL--TDRMGSEYLGKVLSK 288 (609)
Q Consensus 234 ~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~--~~~~g~~~L~~~L~~ 288 (609)
..++.+++.++.++++++..+..... ... ..-+ ....|-+.|-+.|..
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~------~~~-~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAK------KGG-DVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhh------cCC-cEEEEcCCCCCHHHHHHHHHH
Confidence 24667777777888776665544332 111 1111 245788777666654
No 385
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.37 Score=49.59 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
+.-.|.|+|.||+|||+||+-|.+..
T Consensus 187 df~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccC
Confidence 67789999999999999999999864
No 386
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=95.80 E-value=0.0082 Score=54.40 Aligned_cols=114 Identities=16% Similarity=0.245 Sum_probs=66.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-+|.++|+...||+||+=..+|..+ +++....
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~~~-----------------------------------------------de~~~q~- 52 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQNEY-----------------------------------------------DEEYTQT- 52 (205)
T ss_pred EEEEeecccccCceeeehhhhcchh-----------------------------------------------HHHHHHH-
Confidence 5899999999999999999888764 0000111
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~~~ 191 (609)
.|..|.++.+.+. +. ...+++||+-|..+. .+|+.-...++-+|+++. +-...... -+|
T Consensus 53 -~GvN~mdkt~~i~--~t-~IsfSIwdlgG~~~~-------------~n~lPiac~dsvaIlFmF-DLt~r~TLnSi~~W 114 (205)
T KOG1673|consen 53 -LGVNFMDKTVSIR--GT-DISFSIWDLGGQREF-------------INMLPIACKDSVAILFMF-DLTRRSTLNSIKEW 114 (205)
T ss_pred -hCccceeeEEEec--ce-EEEEEEEecCCcHhh-------------hccCceeecCcEEEEEEE-ecCchHHHHHHHHH
Confidence 2233444444432 21 236789999996542 344433444565665544 33322222 245
Q ss_pred HHHHHHhCCCCCceEEEecccCcC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
.+-|+.......| |.|.||.|..
T Consensus 115 Y~QAr~~NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 115 YRQARGLNKTAIP-ILVGTKYDLF 137 (205)
T ss_pred HHHHhccCCccce-EEeccchHhh
Confidence 5555555554333 6789999974
No 387
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.023 Score=59.14 Aligned_cols=78 Identities=26% Similarity=0.339 Sum_probs=45.1
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEeccc
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
+..++.||||.|-.+. ..++-+.+.+. .+.+ +||.||+|+ +++.+ +.+...++.+...-.-+-++|||.
T Consensus 182 e~fdvIIvDTSGRh~q-----e~sLfeEM~~v-~~ai-~Pd~vi~Vm-DasiG---Qaae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQ-----EASLFEEMKQV-SKAI-KPDEIIFVM-DASIG---QAAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred cCCcEEEEeCCCchhh-----hHHHHHHHHHH-Hhhc-CCCeEEEEE-ecccc---HhHHHHHHHHHHhhccceEEEEec
Confidence 3468999999996652 22233322222 2333 478787755 55543 233334444444444566889999
Q ss_pred CcCCCCCcH
Q 007296 213 DLMDKGTDA 221 (609)
Q Consensus 213 D~~~~~~~~ 221 (609)
|--.+|.-+
T Consensus 251 DGhakGGgA 259 (483)
T KOG0780|consen 251 DGHAKGGGA 259 (483)
T ss_pred ccCCCCCce
Confidence 987666533
No 388
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.75 E-value=0.0081 Score=58.99 Aligned_cols=29 Identities=45% Similarity=0.599 Sum_probs=25.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
.++|+|+.+||||||||-|.|.+- | ..|.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~-p-t~G~ 61 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK-P-TSGE 61 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC-C-CCce
Confidence 799999999999999999999985 6 4343
No 389
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.69 E-value=0.0063 Score=61.18 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEe
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 240 (609)
...+.+.|+++.|.+++|+...+.+.......++...+...+.+.++|+||+|+.+......+..+.. ...+..++.++
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~v~~~S 104 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQVLMTS 104 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCeEEEEe
Confidence 35667789999999988764433332222222222233335789999999999975432111222111 12344567777
Q ss_pred eCChhhhccccc
Q 007296 241 NRSQADINKSVD 252 (609)
Q Consensus 241 ~~s~~~i~~~~~ 252 (609)
+.++.++++++.
T Consensus 105 Aktg~gi~eLf~ 116 (245)
T TIGR00157 105 SKNQDGLKELIE 116 (245)
T ss_pred cCCchhHHHHHh
Confidence 777777766554
No 390
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.67 E-value=0.024 Score=59.00 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
-.|.+||-||+||||+||.|-...+
T Consensus 308 ISVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 308 ISVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeeecCCCCchHHHHHHHhhccc
Confidence 3467899999999999999987765
No 391
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.65 E-value=0.032 Score=48.84 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
+|+++|+.++||||++.++....|
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 689999999999999999966554
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.61 E-value=0.046 Score=57.05 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.+|-.+|-|--+||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5899999999999999999999854
No 393
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.59 E-value=0.01 Score=55.71 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=24.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRG 63 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~ 63 (609)
-+++|+|+.+||||||||-|.|... |.+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~-P~~ 53 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET-PAS 53 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC-CCC
Confidence 4799999999999999999999874 655
No 394
>PRK13695 putative NTPase; Provisional
Probab=95.56 E-value=0.036 Score=52.45 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEecC-CCcccchHHHHHHHHhCCCCCceEEEeccc
Q 007296 157 IVQDIENMVRSYIEKPNCIILAISPA-NQDLATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 157 ~~~~i~~~v~~yi~~~~~iIL~v~~a-~~d~~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
.......++...+++++.++ ++.. ..+.......+.+..+-..+.++|+|++|.
T Consensus 82 le~~~~~l~~~~l~~~~~ll--lDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 82 LERIGIPALERALEEADVII--IDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred HHHHHHHHHHhccCCCCEEE--EECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 44455666777778888753 3432 112222333445555556788999999984
No 395
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.52 E-value=0.041 Score=58.03 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-++|+|||+..||||||...|++.
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHH
Confidence 5799999999999999999888865
No 396
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.50 E-value=0.15 Score=52.75 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEec
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKI 79 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~ 79 (609)
..|+++|||+.++|||||..-|...-. --.|.|+-+.|-.+
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~nyav------k~gr~Plfv~LDvg 142 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLNYAV------KQGRRPLFVELDVG 142 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHHHHH------HcCCcceEEEcCCC
Confidence 699999999999999999988876422 12456665555443
No 397
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.35 E-value=0.022 Score=55.28 Aligned_cols=76 Identities=14% Similarity=0.293 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-----chHHHHHHHHhCCCCCceEEEe
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-----TSDAIKISREVDPRGDRTFGVL 209 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-----~~~~l~l~~~~d~~~~rti~Vl 209 (609)
.-|.+||-.|.... ++.....-=..-.++.+++|.+.+....++. .+.+++...+..|. .+++..+
T Consensus 53 l~LnlwDcGgqe~f--------men~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~-AkiF~l~ 123 (295)
T KOG3886|consen 53 LVLNLWDCGGQEEF--------MENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPE-AKIFCLL 123 (295)
T ss_pred heeehhccCCcHHH--------HHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCc-ceEEEEE
Confidence 45678999884321 1111111111234456667665543333222 24455666666665 7888899
Q ss_pred cccCcCCCCC
Q 007296 210 TKIDLMDKGT 219 (609)
Q Consensus 210 tK~D~~~~~~ 219 (609)
+|.|++..+.
T Consensus 124 hKmDLv~~d~ 133 (295)
T KOG3886|consen 124 HKMDLVQEDA 133 (295)
T ss_pred eechhcccch
Confidence 9999998764
No 398
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=95.34 E-value=0.059 Score=55.67 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-+|+|||.--+||||||--|+...
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecc
Confidence 489999999999999998888665
No 399
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.28 E-value=0.018 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
+..+|.|+.+|||||++.|+.=
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 400
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.24 E-value=0.016 Score=52.62 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 007296 37 IAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~ 57 (609)
|+|+|+++||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 401
>PRK12289 GTPase RsgA; Reviewed
Probab=95.06 E-value=0.027 Score=59.55 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEee
Q 007296 162 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVN 241 (609)
Q Consensus 162 ~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~ 241 (609)
..+.+.++.+.|.+++|+...+.++......++...+...+.+.|+|+||+|+++... ...... .....+..++.+++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~-~~~~~~-~~~~~g~~v~~iSA 157 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTE-QQQWQD-RLQQWGYQPLFISV 157 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHH-HHHHHH-HHHhcCCeEEEEEc
Confidence 3456677899998877665433333322212233333446799999999999985421 111111 11122334555566
Q ss_pred CChhhhccccc
Q 007296 242 RSQADINKSVD 252 (609)
Q Consensus 242 ~s~~~i~~~~~ 252 (609)
.++.+++++..
T Consensus 158 ~tg~GI~eL~~ 168 (352)
T PRK12289 158 ETGIGLEALLE 168 (352)
T ss_pred CCCCCHHHHhh
Confidence 66666655444
No 402
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.02 Score=56.65 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=24.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRG 63 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~ 63 (609)
=.|++||+.+|||||||+.|.|..- |.+
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 3799999999999999999999863 443
No 403
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.00 E-value=0.018 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.729 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 404
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.94 E-value=0.014 Score=54.49 Aligned_cols=22 Identities=32% Similarity=0.771 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
+|+|.|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999854
No 405
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.89 E-value=0.065 Score=49.74 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHhhcCCceEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 166 RSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 166 ~~yi~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
.+.++++|.+++++ ++...... ....+..... ..+.|.|+|+||+|+.++.
T Consensus 3 ~~~l~~aD~il~Vv-D~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 3 YKVIDSSDVVIQVL-DARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hHhhhhCCEEEEEE-ECCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 35578899887765 45443332 2233333332 3358999999999998643
No 406
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.82 E-value=0.023 Score=51.17 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|..+||||||+++|+|..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 378999999999999999999984
No 407
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.76 E-value=0.023 Score=54.45 Aligned_cols=31 Identities=29% Similarity=0.627 Sum_probs=24.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~ 67 (609)
-.++|+|.++|||||++++|+|. +|.+.+.+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~--i~~~~~~i 56 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF--IPPDERII 56 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh--cCCCCCEE
Confidence 46899999999999999999986 45444443
No 408
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.74 E-value=0.029 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|+++|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 409
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.026 Score=52.55 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=26.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
-.+.|||..+|||||||++|++. ++-.+|.+|
T Consensus 33 eVLgiVGESGSGKtTLL~~is~r--l~p~~G~v~ 64 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGR--LTPDAGTVT 64 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcc--cCCCCCeEE
Confidence 37899999999999999999997 555556544
No 410
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.72 E-value=0.024 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.689 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|.|+|..+||||||+|+|+|.
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~ 55 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGD 55 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCc
Confidence 47999999999999999999997
No 411
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.69 E-value=0.17 Score=52.28 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHH---HHHHhhcC-CceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIEN---MVRSYIEK-PNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~---~v~~yi~~-~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 210 (609)
.++.|+||.|=-.+. .++.+.++. .+...+.. |+-++| |.+|.. -+.++.-|+.+...-.=+=+|+|
T Consensus 222 ~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~ll-vlDAtt---Gqnal~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 222 IDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEILL-VLDATT---GQNALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred CCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceEEE-EEEccc---ChhHHHHHHHHHHhcCCceEEEE
Confidence 588999999965542 234444433 33344433 444655 445543 24455555555554455778899
Q ss_pred ccCcCCCCCcHHHHH
Q 007296 211 KIDLMDKGTDAVDIL 225 (609)
Q Consensus 211 K~D~~~~~~~~~~~l 225 (609)
|+|-..+|..+..+.
T Consensus 293 KlDgtAKGG~il~I~ 307 (340)
T COG0552 293 KLDGTAKGGIILSIA 307 (340)
T ss_pred ecccCCCcceeeeHH
Confidence 999777776544443
No 412
>PRK01889 GTPase RsgA; Reviewed
Probab=94.67 E-value=0.03 Score=59.48 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=43.3
Q ss_pred hcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhc
Q 007296 169 IEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADIN 248 (609)
Q Consensus 169 i~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~ 248 (609)
+.+.|.+++ |++++.++.....-+++-.+...+.+.++|+||+|+++......+.+... ..+...+.+++.++.+++
T Consensus 110 aANvD~vli-V~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFI-VCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEE-EEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCccHH
Confidence 457787655 45556566554433444444445778899999999986532222222221 222333445555555554
Q ss_pred cc
Q 007296 249 KS 250 (609)
Q Consensus 249 ~~ 250 (609)
.+
T Consensus 187 ~L 188 (356)
T PRK01889 187 VL 188 (356)
T ss_pred HH
Confidence 43
No 413
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=94.67 E-value=0.11 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.+.|+|+-||||||.-+++..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eEEEEccCCCCcchHHHHHHH
Confidence 467999999999999999864
No 414
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.66 E-value=0.055 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|+.||||||++..|.+.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 415
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.12 Score=53.06 Aligned_cols=129 Identities=18% Similarity=0.323 Sum_probs=76.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
.|.-||.--.||+||--||+..-- . .....+..++++.+.-++
T Consensus 56 NVGTIGHVDHGKTTLTaAITkila--~----------------------------~g~A~~~kydeID~APEE------- 98 (449)
T KOG0460|consen 56 NVGTIGHVDHGKTTLTAAITKILA--E----------------------------KGGAKFKKYDEIDKAPEE------- 98 (449)
T ss_pred cccccccccCCchhHHHHHHHHHH--h----------------------------ccccccccHhhhhcChhh-------
Confidence 355689999999999999986421 1 112234445544433222
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~ 193 (609)
+.+|++-+.-.++...+ ..++.=+|.||..+ .|++|+.... +-|..||||. |+.+. .+.+-+-
T Consensus 99 kaRGITIn~aHveYeTa-~RhYaH~DCPGHAD------------YIKNMItGaa-qMDGaILVVa-atDG~MPQTrEHlL 163 (449)
T KOG0460|consen 99 KARGITINAAHVEYETA-KRHYAHTDCPGHAD------------YIKNMITGAA-QMDGAILVVA-ATDGPMPQTREHLL 163 (449)
T ss_pred hhccceEeeeeeeeecc-ccccccCCCCchHH------------HHHHhhcCcc-ccCceEEEEE-cCCCCCcchHHHHH
Confidence 22344444445554443 35788899999543 3455544322 3456667654 44332 2334556
Q ss_pred HHHHhCCCCCceEEEecccCcCCCC
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+|+++.- ..+++.+||.|+++..
T Consensus 164 LArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 164 LARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHHcCC--ceEEEEEecccccCCH
Confidence 8888865 5678889999999654
No 416
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=0.11 Score=49.10 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-chHHHH-HHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAIK-ISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-~~~~l~-l~~~~d~~~~rti~VltK~ 212 (609)
..+..|||.|..+..... -.-||+..-+||++=+.+..-.. .+.|.+ +++ +... .|++.+.||.
T Consensus 59 irf~~wdtagqEk~gglr------------dgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~r-v~~N-iPiv~cGNKv 124 (216)
T KOG0096|consen 59 IRFNVWDTAGQEKKGGLR------------DGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVR-VREN-IPIVLCGNKV 124 (216)
T ss_pred EEEEeeecccceeecccc------------cccEEecceeEEEeeeeehhhhhcchHHHHHHHH-HhcC-CCeeeeccce
Confidence 356689999987754320 12577777677665333222222 233443 333 3332 7999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
|...+......+- .-..-.+-|+.+++.|.-+.+..+-.+.
T Consensus 125 Di~~r~~k~k~v~--~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 125 DIKARKVKAKPVS--FHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred eccccccccccce--eeecccceeEEeecccccccccchHHHh
Confidence 9876552211110 0112236788888777655554444433
No 417
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.44 E-value=0.032 Score=54.17 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=27.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC-cCccccccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD-FLPRGSGIVTRRP 71 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p 71 (609)
-.|+|+|.++||||||++.|.+.. -+....+.+||.|
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 368999999999999999999862 1223334566666
No 418
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.36 E-value=0.037 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|..++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999999974
No 419
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.36 E-value=0.029 Score=53.02 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=29.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRP 71 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p 71 (609)
-+++.|+.+||||||+.+|....-+--+.+.+||-|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 588999999999999999998754444556778777
No 420
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=94.36 E-value=0.087 Score=51.43 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHhhC
Q 007296 37 IAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g 56 (609)
-+|||+|||||||.-+.++.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47899999999998887764
No 421
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.30 E-value=0.04 Score=53.82 Aligned_cols=29 Identities=34% Similarity=0.393 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
.++++|+.+||||||++.|+|.. |...|-
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G~ 57 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL--GPTSGE 57 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCce
Confidence 68999999999999999999973 444443
No 422
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.30 E-value=0.038 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 423
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.28 E-value=0.034 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~ 55 (609)
+.|.|+|+|.++|||||+.+.|.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999999998
No 424
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.039 Score=53.93 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
..++++|+.+||||||++.|.|. +|..+|
T Consensus 26 g~~~i~G~nGsGKSTLl~~l~Gl--~~~~~G 54 (211)
T cd03264 26 GMYGLLGPNGAGKTTLMRILATL--TPPSSG 54 (211)
T ss_pred CcEEEECCCCCCHHHHHHHHhCC--CCCCcc
Confidence 38999999999999999999996 344444
No 425
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.23 E-value=0.046 Score=52.48 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCC-cCccccccccccc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKD-FLPRGSGIVTRRP 71 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p 71 (609)
-.-|+++|+++||||||+++|.... -+......+||-|
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 3458999999999999999998752 1122234455555
No 426
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.22 E-value=0.041 Score=54.05 Aligned_cols=28 Identities=39% Similarity=0.481 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
.++|+|+.+||||||++.|+|. +|...|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl--~~~~~G 59 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL--DRPTSG 59 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC--cCCCce
Confidence 7899999999999999999997 343444
No 427
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.17 E-value=0.044 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 428
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=94.12 E-value=0.1 Score=48.24 Aligned_cols=43 Identities=28% Similarity=0.396 Sum_probs=26.1
Q ss_pred ceEEEEEecCCCcccchHHHHHH-HHhCCCCCceEEEecccCcCCC
Q 007296 173 NCIILAISPANQDLATSDAIKIS-REVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 173 ~~iIL~v~~a~~d~~~~~~l~l~-~~~d~~~~rti~VltK~D~~~~ 217 (609)
|.+++ |+++......... .+. ..+...+.|.|+|+||+|+.++
T Consensus 1 Dvvl~-VvD~~~p~~~~~~-~i~~~~~~~~~~p~IiVlNK~Dl~~~ 44 (155)
T cd01849 1 DVILE-VLDARDPLGTRSP-DIERVLIKEKGKKLILVLNKADLVPK 44 (155)
T ss_pred CEEEE-EEeccCCccccCH-HHHHHHHhcCCCCEEEEEechhcCCH
Confidence 44555 4455543333221 233 3455567999999999999764
No 429
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.07 E-value=0.047 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999974
No 430
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.06 E-value=0.046 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
--.++++|+.+||||||++.|+|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3478999999999999999999974
No 431
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.05 E-value=0.048 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|..+||||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999974
No 432
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.04 E-value=0.046 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.++++|..+|||||+|++|+|.
T Consensus 30 eiv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 30 EIVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999997
No 433
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.04 E-value=0.05 Score=51.92 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|..+||||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
No 434
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.03 E-value=0.045 Score=53.80 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 435
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.048 Score=53.71 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|..+||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 436
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.02 E-value=0.048 Score=54.08 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|..+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 437
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.01 E-value=0.048 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|+.+||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999973
No 438
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.00 E-value=0.048 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|+.+||||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999973
No 439
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=93.99 E-value=0.31 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.+|-.+|.|--+||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5899999999999999999999853
No 440
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.97 E-value=0.051 Score=53.20 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 441
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.05 Score=53.09 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999973
No 442
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.95 E-value=0.043 Score=57.78 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=26.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
-..|+|+|+++|||||++++|++. +|.+..++|
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 356999999999999999999985 466555544
No 443
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=93.94 E-value=0.064 Score=57.38 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=43.2
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
-+.|||.||..+++.+ +...++-.|..++ |+++-.+..-|.. ..+++.-....+-++|+||+|..
T Consensus 99 LiNLIDSPGHVDFSSE-------------VTAALRVTDGALV-VVDcv~GvCVQTE-TVLrQA~~ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSSE-------------VTAALRVTDGALV-VVDCVSGVCVQTE-TVLRQAIAERIKPVLVMNKMDRA 163 (842)
T ss_pred eEEeccCCCcccchhh-------------hhheeEeccCcEE-EEEccCceEechH-HHHHHHHHhhccceEEeehhhHH
Confidence 3569999998887543 5566777777644 5565555555543 24555555556678899999974
No 444
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.92 E-value=0.052 Score=53.91 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
.++++|+.+||||||++.|+|.. |...|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 60 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE--RPTSG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 78999999999999999999973 44444
No 445
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.90 E-value=0.052 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|..+||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 446
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.87 E-value=0.055 Score=52.21 Aligned_cols=32 Identities=34% Similarity=0.661 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
-..+|+|+.++||||||.+|+|. +.|.+ |-|+
T Consensus 28 ev~ailGPNGAGKSTlLk~LsGe-l~p~~-G~v~ 59 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSGE-LSPDS-GEVT 59 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhCc-cCCCC-CeEe
Confidence 47899999999999999999997 34544 4443
No 447
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.056 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|+.+||||||++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 448
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.82 E-value=0.059 Score=50.00 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=25.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
..++|+|+.++|||||+++|.|.. |...|.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 488999999999999999999973 44445443
No 449
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.81 E-value=0.053 Score=53.89 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 450
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.81 E-value=0.053 Score=54.42 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
-++++|+.+|||||||.+|.|. ++-..|
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~--l~p~~G 57 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL--LKPKSG 57 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--CCCCCC
Confidence 5899999999999999999996 454444
No 451
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.056 Score=53.49 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
.++|+|+.+||||||++.|+|.. |-..|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~ 59 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY--DPQKGQ 59 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc--CCCCCE
Confidence 58999999999999999999973 444443
No 452
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.80 E-value=0.055 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|..+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 453
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.79 E-value=0.056 Score=53.05 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|..+||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999973
No 454
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.78 E-value=0.055 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999973
No 455
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.75 E-value=0.06 Score=52.23 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=24.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
-.++|+|..++|||||++.|.|.. |...|
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 55 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS--PPLAG 55 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 479999999999999999999973 44444
No 456
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.74 E-value=0.059 Score=52.22 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
--.++++|+.++|||||++.|.|..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999999974
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.74 E-value=0.062 Score=50.31 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
--.++++|+.++|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478899999999999999999974
No 458
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.058 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|..+||||||++.|+|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 459
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.73 E-value=0.057 Score=53.71 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
.++++|..+||||||++.|.|. +|..+|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl--~~~~~G 55 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF--LRPTSG 55 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC--CCCCCc
Confidence 7899999999999999999996 344444
No 460
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.72 E-value=0.061 Score=52.57 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
.++++|+.+||||||++.|+|.. |...|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 55 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE--EPDSG 55 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 78999999999999999999973 44444
No 461
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.71 E-value=0.059 Score=52.50 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=25.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~ 67 (609)
-.++|+|..++|||||++.|+|.. |..+|.+
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl~--~~~~G~i 65 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRFL--EAEEGKI 65 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc--CCCCCeE
Confidence 379999999999999999999973 4444543
No 462
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.70 E-value=0.059 Score=52.86 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
.++|+|..++|||||++.|+|.. |...|-
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~--~~~~G~ 67 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL--HVESGQ 67 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCee
Confidence 78899999999999999999973 444453
No 463
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.69 E-value=0.06 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|.|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 464
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=93.66 E-value=0.019 Score=56.54 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+++||+.+||||||+|.|+|..
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~ 54 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFY 54 (250)
T ss_pred EEEEECCCCCCceeeeeeecccc
Confidence 68999999999999999999963
No 465
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.65 E-value=0.059 Score=56.03 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
.++++|+.+||||||++.|+|. +|..+|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl--~~p~~G~ 63 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL--LLPDTGT 63 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC--CCCCCcE
Confidence 7999999999999999999997 3444454
No 466
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.64 E-value=0.14 Score=46.54 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=38.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc-hHHHHHHHHhCCCCCceEEEecccC
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~-~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
.+++++|+|+... ......+..+|.+++++.+...++.. ...++...... ...++.+|+|+++
T Consensus 45 yd~VIiD~p~~~~---------------~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~ 108 (139)
T cd02038 45 YDYIIIDTGAGIS---------------DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQL-RVLNFRVVVNRAE 108 (139)
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 5889999998432 12345678889887766553322211 11222222221 3467889999987
Q ss_pred cC
Q 007296 214 LM 215 (609)
Q Consensus 214 ~~ 215 (609)
.-
T Consensus 109 ~~ 110 (139)
T cd02038 109 SP 110 (139)
T ss_pred CH
Confidence 44
No 467
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.061 Score=53.64 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999973
No 468
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=0.2 Score=60.33 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..||=-+|||.+++||||+|..- |.+|
T Consensus 123 yeLPWy~viG~pgsGKTtal~~s-gl~F 149 (1188)
T COG3523 123 YELPWYMVIGPPGSGKTTALLNS-GLQF 149 (1188)
T ss_pred hcCCceEEecCCCCCcchHHhcc-cccC
Confidence 57999999999999999998764 6665
No 469
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.067 Score=50.57 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999973
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.58 E-value=0.05 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.++|+|..|||||||+++|.+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5789999999999999999999976
No 471
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.58 E-value=0.065 Score=52.92 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=24.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
-.++|+|+.+||||||++.|+|.. |...|
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 60 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL--KPTSG 60 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 389999999999999999999973 43444
No 472
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.58 E-value=0.065 Score=53.63 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~ 67 (609)
.++|+|+.+||||||++.|+|.. |-..|.+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 60 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI--DPTEGSI 60 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 68999999999999999999973 4344533
No 473
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=93.58 E-value=0.063 Score=52.67 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=25.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
-.++++|+.+||||||++.|+|.. |-.+|-++
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~--~~~sG~i~ 45 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLD--APDEGDFI 45 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc--cCCCCCEE
Confidence 368899999999999999999974 44455443
No 474
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.58 E-value=0.065 Score=53.56 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
-.++++|+.+||||||++.|.|.. |..+|
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~~--~~~~G 58 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGIV--PRDAG 58 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 378999999999999999999973 43444
No 475
>PRK00098 GTPase RsgA; Reviewed
Probab=93.56 E-value=0.078 Score=54.93 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=43.7
Q ss_pred hcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhc
Q 007296 169 IEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADIN 248 (609)
Q Consensus 169 i~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~ 248 (609)
+.+.|.+++++...+.+.......++...+...+.+.++|+||+|+.+......+... ....++..++.+++.++.+++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~-~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLA-LYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHH-HHHHCCCeEEEEeCCCCccHH
Confidence 4789988876654333322221112332333467899999999999743221111111 111233455666777666665
Q ss_pred ccc
Q 007296 249 KSV 251 (609)
Q Consensus 249 ~~~ 251 (609)
++.
T Consensus 157 ~L~ 159 (298)
T PRK00098 157 ELK 159 (298)
T ss_pred HHH
Confidence 443
No 476
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.56 E-value=0.065 Score=54.18 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
--.++|+|..+||||||++.|+|. ++-..|-++
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl--~~p~~G~I~ 58 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK--LKPNLGKFD 58 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--cCCCCceEe
Confidence 347999999999999999999997 344455443
No 477
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.56 E-value=0.064 Score=42.43 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 007296 37 IAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~ 57 (609)
|++.|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999864
No 478
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=93.55 E-value=0.063 Score=53.51 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=24.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
-.++|+|..+||||||++.|.|.. |..+|-
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~ 59 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERFY--DPTSGE 59 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhccC--CCCCCE
Confidence 378999999999999999999973 444443
No 479
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.55 E-value=0.058 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 480
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.53 E-value=0.067 Score=52.33 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999973
No 481
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.52 E-value=0.068 Score=52.58 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|+.+||||||++.|.|..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
No 482
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.52 E-value=0.067 Score=52.30 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 483
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.48 E-value=0.074 Score=49.97 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
.++|+|..+||||||++.|.|.. |..+|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~--~~~~G 56 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW--PWGSG 56 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCCc
Confidence 78999999999999999999973 43444
No 484
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.067 Score=53.20 Aligned_cols=30 Identities=33% Similarity=0.420 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
-.++|+|+.+||||||++.|.|.. |-..|.
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl~--~~~~G~ 57 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFY--DVSSGS 57 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc--CCCCCE
Confidence 378999999999999999999974 444443
No 485
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.47 E-value=0.068 Score=52.05 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|+.+||||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 368899999999999999999973
No 486
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.47 E-value=0.071 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|..++|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999974
No 487
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.47 E-value=0.067 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|..+||||||++.|+|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999974
No 488
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.46 E-value=0.06 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|..+||||||++.|+|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 378999999999999999999973
No 489
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.45 E-value=0.065 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.+|++|+.+||||||||-+.|.
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhcC
Confidence 47899999999999999999996
No 490
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.066 Score=58.92 Aligned_cols=29 Identities=34% Similarity=0.548 Sum_probs=24.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
-.+++||..+||||||++.|.|. +|...|
T Consensus 348 ~~talvG~SGaGKSTLl~lL~G~--~~~~~G 376 (559)
T COG4988 348 QLTALVGASGAGKSTLLNLLLGF--LAPTQG 376 (559)
T ss_pred cEEEEECCCCCCHHHHHHHHhCc--CCCCCc
Confidence 38999999999999999999995 554444
No 491
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.42 E-value=0.072 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|..+||||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999974
No 492
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=93.41 E-value=0.85 Score=44.13 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 007296 36 SIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (609)
.+++.|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 493
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.40 E-value=0.07 Score=54.28 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGI 66 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~ 66 (609)
.++|+|+.+||||||++.|+|.. |..+|.
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~--~p~~G~ 69 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI--EPTSGE 69 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CCCCCE
Confidence 78899999999999999999973 434443
No 494
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.40 E-value=0.077 Score=50.52 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=24.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
-.++++|+.++|||||++.|.|.. |...|
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~--~~~~G 54 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL--KPSSG 54 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCc
Confidence 378999999999999999999973 43444
No 495
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.39 E-value=0.072 Score=53.83 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|..+||||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 496
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=93.38 E-value=0.13 Score=53.73 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=40.5
Q ss_pred cEEEeCCCCccccCCCCccchHHHHHHHHHHhh-cCCceEEEEEecCCCcccc--hHHHHHHHHhCCCCCceEEEecccC
Q 007296 137 LTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI-EKPNCIILAISPANQDLAT--SDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 137 ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi-~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
+.||||-|.... + +..++-.+ ++.|-.+|+ ++|+.+... .+-+-++- ..+.|+|+|+||+|
T Consensus 203 VsfVDtvGHEpw--------L----rTtirGL~gqk~dYglLv-VaAddG~~~~tkEHLgi~~---a~~lPviVvvTK~D 266 (527)
T COG5258 203 VSFVDTVGHEPW--------L----RTTIRGLLGQKVDYGLLV-VAADDGVTKMTKEHLGIAL---AMELPVIVVVTKID 266 (527)
T ss_pred EEEEecCCccHH--------H----HHHHHHHhccccceEEEE-EEccCCcchhhhHhhhhhh---hhcCCEEEEEEecc
Confidence 569999996543 2 23333333 357877664 566665443 22222222 23589999999999
Q ss_pred cCCCC
Q 007296 214 LMDKG 218 (609)
Q Consensus 214 ~~~~~ 218 (609)
+.+..
T Consensus 267 ~~~dd 271 (527)
T COG5258 267 MVPDD 271 (527)
T ss_pred cCcHH
Confidence 99765
No 497
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.38 E-value=0.076 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=21.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++|+|..+||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999997
No 498
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.38 E-value=0.071 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|..+||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78899999999999999999974
No 499
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.38 E-value=0.074 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|+.++|||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 378999999999999999999973
No 500
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.078 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|+.+||||||+..|.|..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999974
Done!