Query 007296
Match_columns 609
No_of_seqs 373 out of 2862
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 4.1E-96 1E-100 827.1 60.3 593 1-608 26-768 (772)
2 3szr_A Interferon-induced GTP- 100.0 2.8E-86 9.6E-91 744.8 53.5 565 10-606 29-607 (608)
3 3t34_A Dynamin-related protein 100.0 8.1E-53 2.8E-57 446.0 30.0 330 1-330 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 2.6E-48 8.8E-53 410.2 36.9 338 1-348 6-345 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 6.8E-41 2.3E-45 347.8 29.7 309 2-319 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 8.3E-39 2.9E-43 329.3 33.8 298 1-308 1-298 (299)
7 3ljb_A Interferon-induced GTP- 100.0 7.7E-40 2.6E-44 325.7 21.6 251 327-581 3-271 (271)
8 2j69_A Bacterial dynamin-like 99.8 5.7E-18 2E-22 192.7 28.4 172 33-217 68-245 (695)
9 3iev_A GTP-binding protein ERA 99.7 1.4E-18 4.9E-23 179.3 7.6 213 33-304 9-223 (308)
10 1wf3_A GTP-binding protein; GT 99.7 3.1E-18 1E-22 176.0 8.3 207 33-304 6-215 (301)
11 1ega_A Protein (GTP-binding pr 99.6 3.9E-17 1.3E-21 167.9 0.5 204 33-302 7-214 (301)
12 3iby_A Ferrous iron transport 99.6 2.4E-15 8.3E-20 150.8 8.1 157 34-255 1-162 (256)
13 4dhe_A Probable GTP-binding pr 99.5 1.7E-14 5.8E-19 140.8 10.8 169 33-257 28-208 (223)
14 1kao_A RAP2A; GTP-binding prot 99.5 2.7E-14 9.4E-19 131.7 11.4 157 35-257 4-163 (167)
15 1mky_A Probable GTP-binding pr 99.5 9.7E-15 3.3E-19 158.0 7.7 193 34-288 1-202 (439)
16 2xtp_A GTPase IMAP family memb 99.5 2.2E-14 7.5E-19 144.0 9.8 168 33-262 21-210 (260)
17 2qu8_A Putative nucleolar GTP- 99.5 4.7E-14 1.6E-18 138.6 11.7 136 25-218 20-158 (228)
18 3tkl_A RAS-related protein RAB 99.5 4E-14 1.4E-18 134.8 10.8 161 33-258 15-177 (196)
19 3q72_A GTP-binding protein RAD 99.5 2.5E-14 8.7E-19 132.3 8.9 157 34-257 2-161 (166)
20 1svi_A GTP-binding protein YSX 99.5 6.9E-14 2.4E-18 133.2 11.8 163 33-255 22-190 (195)
21 2hjg_A GTP-binding protein ENG 99.5 2.7E-14 9.4E-19 154.3 10.0 189 34-287 3-196 (436)
22 2g6b_A RAS-related protein RAB 99.5 4.1E-14 1.4E-18 132.8 9.6 159 33-255 9-169 (180)
23 2il1_A RAB12; G-protein, GDP, 99.5 5.2E-14 1.8E-18 134.3 10.0 158 33-255 25-185 (192)
24 1xzp_A Probable tRNA modificat 99.5 5.8E-14 2E-18 152.7 11.6 160 34-258 243-403 (482)
25 1g16_A RAS-related protein SEC 99.5 2.6E-14 9E-19 132.5 7.6 157 34-257 3-162 (170)
26 2bme_A RAB4A, RAS-related prot 99.5 5.8E-14 2E-18 132.6 10.1 160 33-258 9-171 (186)
27 3lxw_A GTPase IMAP family memb 99.5 7.9E-14 2.7E-18 139.0 11.1 169 33-260 20-208 (247)
28 2nzj_A GTP-binding protein REM 99.5 7.2E-14 2.5E-18 130.3 10.2 161 33-257 3-166 (175)
29 3gee_A MNME, tRNA modification 99.5 1.5E-14 5.1E-19 157.2 6.3 160 34-257 233-395 (476)
30 1z08_A RAS-related protein RAB 99.5 2.7E-14 9.3E-19 132.5 7.2 159 33-256 5-165 (170)
31 2dyk_A GTP-binding protein; GT 99.5 4.7E-14 1.6E-18 129.7 8.7 155 34-254 1-156 (161)
32 1z0f_A RAB14, member RAS oncog 99.5 3.7E-14 1.3E-18 132.7 8.1 157 33-254 14-172 (179)
33 3bc1_A RAS-related protein RAB 99.5 1.4E-13 4.9E-18 130.3 12.3 110 135-257 70-182 (195)
34 2oil_A CATX-8, RAS-related pro 99.5 6.7E-14 2.3E-18 133.3 9.7 158 33-255 24-183 (193)
35 1u8z_A RAS-related protein RAL 99.5 6.4E-14 2.2E-18 129.3 9.2 157 33-255 3-162 (168)
36 1zbd_A Rabphilin-3A; G protein 99.5 1.3E-13 4.5E-18 132.4 11.8 159 33-256 7-167 (203)
37 2a9k_A RAS-related protein RAL 99.5 1.2E-13 4E-18 130.2 11.2 161 33-259 17-180 (187)
38 2fg5_A RAB-22B, RAS-related pr 99.5 2.7E-14 9.2E-19 136.2 6.8 159 33-256 22-182 (192)
39 1z0j_A RAB-22, RAS-related pro 99.5 5.5E-14 1.9E-18 130.3 8.7 157 33-254 5-163 (170)
40 3pqc_A Probable GTP-binding pr 99.5 1.7E-13 5.9E-18 130.1 12.3 163 33-256 22-190 (195)
41 4djt_A GTP-binding nuclear pro 99.5 2.8E-14 9.5E-19 138.8 6.8 164 33-260 10-175 (218)
42 1c1y_A RAS-related protein RAP 99.5 6.2E-14 2.1E-18 129.6 8.8 155 35-255 4-162 (167)
43 3lxx_A GTPase IMAP family memb 99.5 5.6E-14 1.9E-18 139.2 9.0 130 33-218 28-161 (239)
44 2qtf_A Protein HFLX, GTP-bindi 99.5 2.6E-13 9E-18 142.7 14.0 176 33-267 178-361 (364)
45 4dcu_A GTP-binding protein ENG 99.5 5.9E-14 2E-18 152.6 9.3 158 32-254 21-179 (456)
46 2bov_A RAla, RAS-related prote 99.5 1.6E-13 5.4E-18 131.8 11.3 162 33-260 13-177 (206)
47 3kkq_A RAS-related protein M-R 99.5 9.3E-14 3.2E-18 130.9 9.4 160 32-257 16-179 (183)
48 3i8s_A Ferrous iron transport 99.5 3E-14 1E-18 144.3 6.3 155 34-254 3-163 (274)
49 3cph_A RAS-related protein SEC 99.5 8.8E-14 3E-18 134.4 9.3 162 33-260 19-182 (213)
50 2fn4_A P23, RAS-related protei 99.5 7.5E-14 2.6E-18 130.8 8.1 160 33-258 8-170 (181)
51 4dcu_A GTP-binding protein ENG 99.5 1.9E-13 6.4E-18 148.6 12.4 166 33-256 194-365 (456)
52 2erx_A GTP-binding protein DI- 99.5 1.6E-13 5.3E-18 127.3 10.2 156 34-255 3-162 (172)
53 3t5d_A Septin-7; GTP-binding p 99.5 2.3E-13 7.9E-18 137.8 12.3 173 34-253 8-197 (274)
54 4dsu_A GTPase KRAS, isoform 2B 99.5 1.7E-13 5.8E-18 129.4 10.6 158 34-258 4-164 (189)
55 2hjg_A GTP-binding protein ENG 99.5 2.3E-13 7.8E-18 147.1 12.9 167 33-256 174-345 (436)
56 2ew1_A RAS-related protein RAB 99.5 1.4E-13 4.9E-18 132.6 10.1 161 33-258 25-187 (201)
57 2lkc_A Translation initiation 99.5 1.1E-13 3.7E-18 129.6 9.0 156 33-257 7-168 (178)
58 2hup_A RAS-related protein RAB 99.5 1.4E-13 4.7E-18 132.5 9.8 161 33-258 28-191 (201)
59 3clv_A RAB5 protein, putative; 99.5 2.4E-13 8.1E-18 129.8 11.4 105 135-256 93-200 (208)
60 2y8e_A RAB-protein 6, GH09086P 99.5 7.8E-14 2.7E-18 130.5 7.8 156 34-254 14-171 (179)
61 2gf9_A RAS-related protein RAB 99.5 1E-13 3.6E-18 131.6 8.7 159 33-256 21-181 (189)
62 3a1s_A Iron(II) transport prot 99.5 7.9E-14 2.7E-18 139.9 8.2 155 33-256 4-163 (258)
63 3tw8_B RAS-related protein RAB 99.5 3.5E-14 1.2E-18 133.1 5.2 157 33-256 8-167 (181)
64 1ek0_A Protein (GTP-binding pr 99.5 1.3E-13 4.4E-18 127.6 8.9 153 35-253 4-162 (170)
65 3b1v_A Ferrous iron uptake tra 99.4 7.5E-14 2.6E-18 141.1 7.8 152 34-255 3-159 (272)
66 1upt_A ARL1, ADP-ribosylation 99.4 1.1E-13 3.7E-18 128.6 8.3 153 33-256 6-165 (171)
67 2ce2_X GTPase HRAS; signaling 99.4 1.8E-13 6.3E-18 125.8 9.7 154 35-256 4-161 (166)
68 2cxx_A Probable GTP-binding pr 99.4 2.7E-13 9.4E-18 128.2 11.0 162 34-256 1-180 (190)
69 2a5j_A RAS-related protein RAB 99.4 1.2E-13 4.2E-18 131.4 8.6 160 33-257 20-181 (191)
70 3geh_A MNME, tRNA modification 99.4 5.7E-14 2E-18 152.1 7.0 158 34-257 224-381 (462)
71 1wms_A RAB-9, RAB9, RAS-relate 99.4 2.6E-13 8.8E-18 126.9 10.6 159 33-256 6-170 (177)
72 3dz8_A RAS-related protein RAB 99.4 9.8E-14 3.3E-18 132.1 7.8 159 33-256 22-182 (191)
73 2bcg_Y Protein YP2, GTP-bindin 99.4 1.6E-13 5.4E-18 132.2 9.1 160 33-257 7-168 (206)
74 2efe_B Small GTP-binding prote 99.4 2.6E-13 8.9E-18 127.4 10.2 157 33-255 11-170 (181)
75 1z2a_A RAS-related protein RAB 99.4 8.9E-14 3E-18 128.6 6.8 156 33-254 4-161 (168)
76 2hxs_A RAB-26, RAS-related pro 99.4 5.7E-14 2E-18 131.5 5.6 160 33-256 5-169 (178)
77 1r2q_A RAS-related protein RAB 99.4 1.9E-13 6.5E-18 126.5 8.8 155 34-254 6-163 (170)
78 2p5s_A RAS and EF-hand domain 99.4 1.2E-13 4.2E-18 132.4 7.6 157 33-254 27-191 (199)
79 1zj6_A ADP-ribosylation factor 99.4 5.8E-13 2E-17 126.2 12.2 153 33-256 15-174 (187)
80 4bas_A ADP-ribosylation factor 99.4 3.5E-13 1.2E-17 128.6 10.7 158 32-258 15-187 (199)
81 3q85_A GTP-binding protein REM 99.4 2.1E-13 7.1E-18 126.5 8.8 159 34-256 2-163 (169)
82 3oes_A GTPase rhebl1; small GT 99.4 8.6E-14 2.9E-18 133.7 6.3 159 33-258 23-185 (201)
83 2qpt_A EH domain-containing pr 99.4 2.2E-13 7.6E-18 150.8 10.5 167 33-218 64-234 (550)
84 2gj8_A MNME, tRNA modification 99.4 5.6E-13 1.9E-17 124.9 11.8 156 34-254 4-160 (172)
85 1r8s_A ADP-ribosylation factor 99.4 4.8E-13 1.6E-17 123.4 11.2 148 36-255 2-157 (164)
86 1ky3_A GTP-binding protein YPT 99.4 2.1E-13 7.1E-18 127.9 8.8 158 33-257 7-175 (182)
87 1z06_A RAS-related protein RAB 99.4 2.5E-13 8.4E-18 129.0 9.2 154 33-251 19-179 (189)
88 2o52_A RAS-related protein RAB 99.4 1.4E-13 4.7E-18 132.3 7.1 161 33-259 24-187 (200)
89 2f7s_A C25KG, RAS-related prot 99.4 2.6E-13 9E-18 131.8 9.1 110 135-258 84-197 (217)
90 2h57_A ADP-ribosylation factor 99.4 3.5E-13 1.2E-17 128.0 9.8 155 33-255 20-182 (190)
91 3t5g_A GTP-binding protein RHE 99.4 1.5E-13 5.1E-18 129.2 7.1 160 33-258 5-167 (181)
92 2fu5_C RAS-related protein RAB 99.4 9.2E-14 3.2E-18 130.9 5.5 159 33-256 7-167 (183)
93 2yc2_C IFT27, small RAB-relate 99.4 1.3E-13 4.5E-18 132.5 6.0 69 135-216 73-146 (208)
94 1vg8_A RAS-related protein RAB 99.4 3.4E-13 1.2E-17 129.6 9.0 158 33-255 7-170 (207)
95 3con_A GTPase NRAS; structural 99.4 5.2E-13 1.8E-17 126.6 10.0 156 33-256 20-179 (190)
96 2wji_A Ferrous iron transport 99.4 1.6E-13 5.4E-18 127.6 6.1 152 34-254 3-159 (165)
97 3k53_A Ferrous iron transport 99.4 1.1E-13 3.8E-18 139.9 5.4 156 33-257 2-163 (271)
98 1zd9_A ADP-ribosylation factor 99.4 1.1E-12 3.7E-17 124.6 11.5 150 34-254 22-179 (188)
99 4dkx_A RAS-related protein RAB 99.4 3.3E-13 1.1E-17 131.7 8.0 157 35-256 14-172 (216)
100 2q3h_A RAS homolog gene family 99.4 3.1E-13 1E-17 129.6 7.7 119 32-217 18-139 (201)
101 1x3s_A RAS-related protein RAB 99.4 6.4E-13 2.2E-17 126.2 9.8 161 33-260 14-178 (195)
102 2atv_A RERG, RAS-like estrogen 99.4 6.7E-13 2.3E-17 126.8 10.0 157 33-256 27-187 (196)
103 1lnz_A SPO0B-associated GTP-bi 99.4 8E-14 2.7E-18 145.2 3.2 164 34-258 158-328 (342)
104 1ksh_A ARF-like protein 2; sma 99.4 1.1E-12 3.9E-17 123.8 10.8 156 33-260 17-180 (186)
105 1moz_A ARL1, ADP-ribosylation 99.4 7.9E-13 2.7E-17 124.4 9.5 155 33-258 17-178 (183)
106 3qq5_A Small GTP-binding prote 99.4 7.5E-13 2.6E-17 141.6 10.2 162 33-258 33-194 (423)
107 2x77_A ADP-ribosylation factor 99.4 2E-13 6.9E-18 129.5 4.9 153 33-257 21-181 (189)
108 2gf0_A GTP-binding protein DI- 99.4 1.1E-12 3.6E-17 125.2 10.0 156 33-255 7-166 (199)
109 3cbq_A GTP-binding protein REM 99.4 1.4E-12 4.7E-17 125.0 10.5 160 33-256 22-184 (195)
110 1mh1_A RAC1; GTP-binding, GTPa 99.4 4E-13 1.4E-17 126.5 6.5 118 33-217 4-124 (186)
111 3t1o_A Gliding protein MGLA; G 99.4 3.5E-13 1.2E-17 128.2 6.0 105 135-256 74-188 (198)
112 2h17_A ADP-ribosylation factor 99.4 1.1E-12 3.8E-17 123.6 9.5 150 32-252 19-175 (181)
113 2fh5_B SR-beta, signal recogni 99.4 1.7E-12 5.8E-17 125.7 10.9 119 33-218 6-131 (214)
114 3llu_A RAS-related GTP-binding 99.4 2.1E-12 7.2E-17 123.5 11.3 157 32-254 18-191 (196)
115 1fzq_A ADP-ribosylation factor 99.4 2E-12 6.8E-17 122.1 10.8 151 33-255 15-173 (181)
116 3cpj_B GTP-binding protein YPT 99.4 3.8E-13 1.3E-17 131.5 5.8 157 33-255 12-171 (223)
117 2gco_A H9, RHO-related GTP-bin 99.3 4.9E-13 1.7E-17 128.4 5.4 116 35-217 26-144 (201)
118 3l0i_B RAS-related protein RAB 99.3 5.3E-14 1.8E-18 135.0 -1.5 152 33-253 32-189 (199)
119 3c5c_A RAS-like protein 12; GD 99.3 9.8E-13 3.4E-17 124.9 7.2 157 33-256 20-182 (187)
120 3reg_A RHO-like small GTPase; 99.3 4.7E-13 1.6E-17 127.6 5.0 157 33-256 22-184 (194)
121 2fv8_A H6, RHO-related GTP-bin 99.3 2.9E-13 1E-17 130.7 3.5 116 35-217 26-144 (207)
122 2wjg_A FEOB, ferrous iron tran 99.3 6.9E-13 2.4E-17 125.5 5.9 156 33-257 6-166 (188)
123 2b6h_A ADP-ribosylation factor 99.3 9.1E-13 3.1E-17 125.8 6.6 151 33-255 28-186 (192)
124 2atx_A Small GTP binding prote 99.3 1.8E-12 6.3E-17 123.4 8.3 117 34-217 18-137 (194)
125 3q3j_B RHO-related GTP-binding 99.3 1.5E-12 5.1E-17 126.6 7.4 159 32-257 25-200 (214)
126 2j1l_A RHO-related GTP-binding 99.3 1.8E-12 6E-17 126.0 7.8 117 34-217 34-153 (214)
127 3gj0_A GTP-binding nuclear pro 99.3 7.1E-13 2.4E-17 129.2 4.6 110 135-260 64-175 (221)
128 2j0v_A RAC-like GTP-binding pr 99.3 8.1E-13 2.8E-17 127.8 4.7 118 33-217 8-128 (212)
129 2iwr_A Centaurin gamma 1; ANK 99.3 3.8E-12 1.3E-16 119.2 8.9 149 33-255 6-164 (178)
130 1m2o_B GTP-binding protein SAR 99.3 8.5E-12 2.9E-16 118.8 11.2 149 33-252 22-184 (190)
131 1f6b_A SAR1; gtpases, N-termin 99.3 4.4E-12 1.5E-16 121.6 9.2 113 33-216 24-140 (198)
132 1mky_A Probable GTP-binding pr 99.3 7.9E-12 2.7E-16 135.1 12.2 168 33-256 179-351 (439)
133 3bwd_D RAC-like GTP-binding pr 99.3 6.9E-13 2.4E-17 124.5 3.2 118 33-217 7-127 (182)
134 1m7b_A RND3/RHOE small GTP-bin 99.3 2.1E-12 7.3E-17 122.0 6.5 117 33-216 6-125 (184)
135 2e87_A Hypothetical protein PH 99.3 1.6E-11 5.4E-16 129.1 13.7 160 33-254 166-330 (357)
136 3th5_A RAS-related C3 botulinu 99.0 2.6E-13 8.8E-18 130.6 0.0 118 33-217 29-149 (204)
137 4gzl_A RAS-related C3 botulinu 99.3 7.1E-13 2.4E-17 127.8 2.7 119 33-218 29-150 (204)
138 2ged_A SR-beta, signal recogni 99.3 1.9E-11 6.3E-16 116.1 12.5 119 33-218 47-172 (193)
139 1gwn_A RHO-related GTP-binding 99.3 4E-12 1.4E-16 122.8 7.1 117 33-216 27-146 (205)
140 3ihw_A Centg3; RAS, centaurin, 99.3 9.8E-12 3.3E-16 117.8 9.6 152 33-257 19-177 (184)
141 1h65_A Chloroplast outer envel 99.3 1.6E-11 5.5E-16 123.8 10.9 126 33-218 38-170 (270)
142 2g3y_A GTP-binding protein GEM 99.2 8.2E-12 2.8E-16 121.3 8.1 162 33-257 36-200 (211)
143 1nrj_B SR-beta, signal recogni 99.2 1E-11 3.6E-16 120.5 8.8 115 33-218 11-136 (218)
144 3r7w_A Gtpase1, GTP-binding pr 99.2 1.2E-11 4.1E-16 127.2 8.9 122 35-216 4-129 (307)
145 3o47_A ADP-ribosylation factor 99.2 8.2E-12 2.8E-16 129.7 7.6 150 36-256 167-323 (329)
146 3dpu_A RAB family protein; roc 99.2 2.3E-11 7.9E-16 134.8 10.5 166 33-258 40-206 (535)
147 3izy_P Translation initiation 99.2 2.7E-12 9.2E-17 140.8 2.0 155 33-255 3-163 (537)
148 3def_A T7I23.11 protein; chlor 99.2 6.8E-11 2.3E-15 118.7 12.1 125 33-217 35-166 (262)
149 3lvq_E ARF-GAP with SH3 domain 99.2 7.5E-11 2.6E-15 129.5 12.6 151 34-256 322-480 (497)
150 1wxq_A GTP-binding protein; st 99.2 7.4E-12 2.5E-16 133.1 4.2 38 36-73 2-39 (397)
151 2cjw_A GTP-binding protein GEM 99.2 1.4E-11 4.9E-16 117.5 5.6 109 136-256 57-168 (192)
152 2wkq_A NPH1-1, RAS-related C3 99.2 2.4E-11 8.1E-16 125.7 7.7 117 33-217 154-274 (332)
153 2zej_A Dardarin, leucine-rich 99.1 1.8E-11 6.3E-16 115.7 4.9 69 135-217 56-127 (184)
154 4a9a_A Ribosome-interacting GT 99.1 4.7E-11 1.6E-15 125.3 7.7 122 33-215 71-195 (376)
155 2f9l_A RAB11B, member RAS onco 99.1 6.9E-11 2.4E-15 113.2 8.0 160 33-257 4-165 (199)
156 3sjy_A Translation initiation 99.1 2E-10 6.8E-15 122.7 11.6 68 135-218 75-145 (403)
157 3p26_A Elongation factor 1 alp 99.1 1.2E-10 3.9E-15 127.4 9.3 182 33-252 32-230 (483)
158 3izq_1 HBS1P, elongation facto 99.1 2.5E-10 8.5E-15 127.9 11.7 181 33-250 166-362 (611)
159 2qag_A Septin-2, protein NEDD5 99.1 1.1E-10 3.8E-15 122.6 7.9 113 136-252 96-225 (361)
160 1wb1_A Translation elongation 99.1 1.3E-10 4.6E-15 126.7 8.4 160 33-257 18-186 (482)
161 3tr5_A RF-3, peptide chain rel 99.1 2.7E-10 9.3E-15 125.3 10.5 138 33-217 12-149 (528)
162 3j2k_7 ERF3, eukaryotic polype 99.1 2.6E-10 8.9E-15 123.0 10.1 68 135-216 95-169 (439)
163 1oix_A RAS-related protein RAB 99.0 3.2E-10 1.1E-14 107.9 7.6 120 33-217 28-149 (191)
164 2ywe_A GTP-binding protein LEP 99.0 5.8E-10 2E-14 123.9 9.8 134 33-217 5-140 (600)
165 1zun_B Sulfate adenylate trans 99.0 1E-09 3.5E-14 118.3 11.3 67 134-217 103-172 (434)
166 1g7s_A Translation initiation 99.0 2.4E-10 8.2E-15 127.3 6.5 67 135-216 70-136 (594)
167 1zo1_I IF2, translation initia 99.0 6.5E-11 2.2E-15 128.8 1.2 114 33-217 3-118 (501)
168 3cb4_D GTP-binding protein LEP 99.0 5.5E-10 1.9E-14 124.3 8.5 134 33-217 3-138 (599)
169 2elf_A Protein translation elo 99.0 9.8E-10 3.4E-14 115.7 9.7 62 135-214 60-125 (370)
170 1s0u_A EIF-2-gamma, translatio 99.0 2.9E-09 9.8E-14 113.8 12.4 103 135-254 81-192 (408)
171 1pui_A ENGB, probable GTP-bind 99.0 1.6E-09 5.5E-14 104.1 9.4 126 33-218 25-153 (210)
172 2www_A Methylmalonic aciduria 98.9 9.4E-10 3.2E-14 115.0 8.1 25 33-57 73-97 (349)
173 1kk1_A EIF2gamma; initiation o 98.9 1.9E-09 6.4E-14 115.4 10.3 67 135-217 83-152 (410)
174 1f60_A Elongation factor EEF1A 98.9 7.9E-10 2.7E-14 119.9 6.7 143 33-216 6-159 (458)
175 3p32_A Probable GTPase RV1496/ 98.9 3E-09 1E-13 111.5 10.8 104 134-259 171-283 (355)
176 2c78_A Elongation factor TU-A; 98.9 1.8E-09 6.2E-14 115.3 8.4 66 134-216 74-142 (405)
177 2h5e_A Peptide chain release f 98.9 4.2E-09 1.4E-13 115.9 11.3 70 134-218 81-150 (529)
178 3c5h_A Glucocorticoid receptor 98.9 8.3E-10 2.8E-14 110.3 4.7 83 171-255 162-250 (255)
179 1udx_A The GTP-binding protein 98.9 3.7E-09 1.3E-13 112.6 9.8 164 34-258 157-323 (416)
180 1jny_A EF-1-alpha, elongation 98.9 3.3E-09 1.1E-13 114.3 9.6 67 134-217 83-159 (435)
181 1jal_A YCHF protein; nucleotid 98.9 2.3E-09 7.7E-14 111.9 7.6 37 35-71 3-39 (363)
182 3r7w_B Gtpase2, GTP-binding pr 98.9 8.8E-09 3E-13 105.6 11.5 116 36-217 1-121 (331)
183 2qag_C Septin-7; cell cycle, c 98.8 1E-08 3.5E-13 109.3 9.7 81 135-217 88-182 (418)
184 3mca_A HBS1, elongation factor 98.8 1.6E-10 5.6E-15 128.9 -4.8 66 135-216 255-329 (592)
185 2xex_A Elongation factor G; GT 98.8 5.4E-09 1.9E-13 118.8 7.6 69 134-217 74-142 (693)
186 1r5b_A Eukaryotic peptide chai 98.8 3.6E-09 1.2E-13 115.0 4.6 67 134-216 120-195 (467)
187 2qnr_A Septin-2, protein NEDD5 98.7 1.4E-08 4.9E-13 103.8 8.1 179 35-260 19-214 (301)
188 1d2e_A Elongation factor TU (E 98.7 1.4E-08 4.7E-13 108.2 7.9 66 134-216 65-133 (397)
189 1dar_A EF-G, elongation factor 98.7 1.6E-08 5.4E-13 115.0 8.5 69 134-217 76-144 (691)
190 2rdo_7 EF-G, elongation factor 98.7 5.2E-08 1.8E-12 110.9 12.5 68 135-217 82-149 (704)
191 1n0u_A EF-2, elongation factor 98.7 1.1E-08 3.9E-13 118.6 6.8 66 135-215 98-163 (842)
192 3avx_A Elongation factor TS, e 98.7 1.8E-08 6E-13 117.6 7.5 66 134-216 358-426 (1289)
193 2qag_B Septin-6, protein NEDD5 98.7 3.7E-08 1.3E-12 104.6 9.4 135 33-218 41-192 (427)
194 3ec1_A YQEH GTPase; atnos1, at 98.7 8.3E-09 2.9E-13 108.6 3.7 23 35-57 163-185 (369)
195 2dy1_A Elongation factor G; tr 98.7 2.6E-08 8.8E-13 112.8 7.8 132 33-215 8-139 (665)
196 3h2y_A GTPase family protein; 98.6 1.5E-08 5.1E-13 106.6 4.9 126 35-218 161-289 (368)
197 2p67_A LAO/AO transport system 98.6 4.8E-08 1.6E-12 101.7 8.4 25 33-57 55-79 (341)
198 2ohf_A Protein OLA1, GTP-bindi 98.6 3.1E-08 1.1E-12 104.3 6.7 106 33-181 21-126 (396)
199 2qm8_A GTPase/ATPase; G protei 98.6 2.9E-07 9.7E-12 95.6 11.8 25 33-57 54-78 (337)
200 2dby_A GTP-binding protein; GD 98.5 1.3E-07 4.6E-12 99.0 8.6 108 35-181 2-109 (368)
201 3sop_A Neuronal-specific septi 98.5 3.8E-07 1.3E-11 91.6 9.3 82 135-218 60-156 (270)
202 3vqt_A RF-3, peptide chain rel 98.4 1.5E-07 5.3E-12 103.9 6.1 136 33-217 30-167 (548)
203 1yrb_A ATP(GTP)binding protein 98.4 7.4E-07 2.5E-11 88.6 9.5 28 32-59 12-44 (262)
204 2j37_W Signal recognition part 98.4 6.6E-07 2.3E-11 97.3 9.2 79 134-224 183-262 (504)
205 2wsm_A Hydrogenase expression/ 98.3 3.2E-07 1.1E-11 88.8 5.3 25 33-57 29-53 (221)
206 3j25_A Tetracycline resistance 98.3 3.3E-07 1.1E-11 103.3 5.5 134 34-218 2-135 (638)
207 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 5E-07 1.7E-11 95.3 6.2 41 33-73 19-60 (392)
208 4fn5_A EF-G 1, elongation fact 98.3 5.9E-07 2E-11 102.5 6.8 137 33-217 12-152 (709)
209 3dm5_A SRP54, signal recogniti 98.3 9.9E-06 3.4E-10 86.4 15.0 80 135-225 183-262 (443)
210 1tq4_A IIGP1, interferon-induc 98.2 6E-06 2.1E-10 87.6 12.6 121 33-215 68-188 (413)
211 1puj_A YLQF, conserved hypothe 98.2 1.5E-06 5E-11 87.9 5.8 26 34-59 120-145 (282)
212 1f5n_A Interferon-induced guan 98.1 5E-06 1.7E-10 91.9 9.2 27 33-59 37-63 (592)
213 2hf9_A Probable hydrogenase ni 98.0 6.8E-06 2.3E-10 79.6 7.4 27 33-59 37-63 (226)
214 3kl4_A SRP54, signal recogniti 98.0 6.1E-05 2.1E-09 80.3 14.1 83 134-225 179-261 (433)
215 3cnl_A YLQF, putative uncharac 97.9 6.9E-06 2.4E-10 82.0 5.3 25 35-59 100-124 (262)
216 2v3c_C SRP54, signal recogniti 97.9 2.5E-05 8.4E-10 83.6 9.8 80 133-224 179-260 (432)
217 1rj9_A FTSY, signal recognitio 97.6 0.00022 7.5E-09 72.6 10.2 86 136-226 186-271 (304)
218 3q5d_A Atlastin-1; G protein, 97.5 4.6E-05 1.6E-09 81.5 4.7 25 33-57 66-90 (447)
219 1j8m_F SRP54, signal recogniti 97.5 0.00036 1.2E-08 70.8 11.0 82 134-225 180-262 (297)
220 3e70_C DPA, signal recognition 97.5 0.00035 1.2E-08 71.9 9.6 79 136-225 213-291 (328)
221 2yhs_A FTSY, cell division pro 97.4 0.00031 1.1E-08 75.6 8.9 83 135-226 376-462 (503)
222 2xxa_A Signal recognition part 97.4 0.00063 2.2E-08 72.7 11.2 80 135-225 184-263 (433)
223 2px0_A Flagellar biosynthesis 97.4 0.0015 5E-08 66.3 13.2 80 134-226 182-263 (296)
224 1vma_A Cell division protein F 97.3 0.00043 1.5E-08 70.5 8.1 84 134-226 186-273 (306)
225 1zu4_A FTSY; GTPase, signal re 96.9 0.0043 1.5E-07 63.5 11.3 84 134-226 191-278 (320)
226 2ffh_A Protein (FFH); SRP54, s 96.9 0.0015 5E-08 69.5 7.3 80 135-225 181-260 (425)
227 2og2_A Putative signal recogni 96.8 0.0024 8.3E-08 66.3 8.6 86 136-226 242-327 (359)
228 3b9q_A Chloroplast SRP recepto 96.6 0.003 1E-07 64.1 7.5 86 136-226 185-270 (302)
229 1cip_A Protein (guanine nucleo 96.6 0.00069 2.4E-08 70.4 2.6 69 134-215 192-273 (353)
230 1u0l_A Probable GTPase ENGC; p 96.6 0.0009 3.1E-08 68.0 2.9 100 136-252 64-165 (301)
231 1t9h_A YLOQ, probable GTPase E 96.5 0.0011 3.8E-08 67.4 2.9 24 35-58 174-197 (307)
232 1zcb_A G alpha I/13; GTP-bindi 96.4 0.0024 8.1E-08 66.6 4.8 69 134-215 200-281 (362)
233 1ls1_A Signal recognition part 96.3 0.013 4.4E-07 59.2 9.9 82 134-226 180-261 (295)
234 3ohm_A Guanine nucleotide-bind 95.8 0.0038 1.3E-07 64.0 2.7 70 134-216 166-248 (327)
235 4fid_A G protein alpha subunit 95.5 0.011 3.7E-07 60.8 4.9 70 134-216 160-242 (340)
236 4dzz_A Plasmid partitioning pr 95.3 0.06 2.1E-06 50.4 9.2 66 135-215 76-143 (206)
237 4ido_A Atlastin-1; GTPase, GTP 95.2 0.012 4E-07 62.7 4.3 23 33-55 66-88 (457)
238 2yv5_A YJEQ protein; hydrolase 95.1 0.0063 2.1E-07 61.7 1.8 87 164-251 72-160 (302)
239 3ney_A 55 kDa erythrocyte memb 95.1 0.0082 2.8E-07 56.8 2.3 37 33-71 18-58 (197)
240 1azs_C GS-alpha; complex (lyas 94.8 0.019 6.5E-07 60.4 4.3 69 134-215 216-297 (402)
241 1ex7_A Guanylate kinase; subst 94.7 0.011 3.7E-07 55.5 2.1 35 37-71 4-40 (186)
242 1puj_A YLQF, conserved hypothe 94.7 0.049 1.7E-06 54.5 7.1 86 162-255 14-101 (282)
243 2rcn_A Probable GTPase ENGC; Y 94.5 0.022 7.5E-07 59.0 4.1 23 36-58 217-239 (358)
244 3tif_A Uncharacterized ABC tra 94.5 0.019 6.4E-07 55.9 3.2 24 35-58 32-55 (235)
245 1kgd_A CASK, peripheral plasma 94.4 0.015 5.1E-07 53.9 2.4 23 35-57 6-28 (180)
246 2xtz_A Guanine nucleotide-bind 94.4 0.015 5.3E-07 60.1 2.6 70 134-216 182-264 (354)
247 2pcj_A ABC transporter, lipopr 94.4 0.019 6.3E-07 55.5 3.0 23 36-58 32-54 (224)
248 1lvg_A Guanylate kinase, GMP k 94.3 0.016 5.5E-07 54.7 2.4 23 35-57 5-27 (198)
249 1ye8_A Protein THEP1, hypothet 94.3 0.018 6.1E-07 53.5 2.6 22 36-57 2-23 (178)
250 3tau_A Guanylate kinase, GMP k 94.3 0.021 7E-07 54.3 3.0 24 34-57 8-31 (208)
251 1u0l_A Probable GTPase ENGC; p 94.3 0.024 8.3E-07 57.3 3.7 25 35-59 170-194 (301)
252 4g1u_C Hemin import ATP-bindin 94.2 0.026 9E-07 56.0 3.8 23 36-58 39-61 (266)
253 1g6h_A High-affinity branched- 94.2 0.022 7.7E-07 56.1 3.2 23 36-58 35-57 (257)
254 1mv5_A LMRA, multidrug resista 94.2 0.028 9.7E-07 54.9 3.9 23 36-58 30-52 (243)
255 1sgw_A Putative ABC transporte 94.2 0.023 8E-07 54.4 3.2 23 36-58 37-59 (214)
256 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.021 7.2E-07 58.6 3.1 30 36-67 173-202 (330)
257 3h2y_A GTPase family protein; 94.2 0.032 1.1E-06 58.1 4.5 118 159-288 57-182 (368)
258 3gfo_A Cobalt import ATP-bindi 94.2 0.023 7.9E-07 56.7 3.2 23 36-58 36-58 (275)
259 2gza_A Type IV secretion syste 94.1 0.023 8E-07 59.0 3.3 31 35-67 176-206 (361)
260 1znw_A Guanylate kinase, GMP k 94.1 0.019 6.5E-07 54.5 2.4 22 36-57 22-43 (207)
261 1zp6_A Hypothetical protein AT 94.1 0.024 8.1E-07 52.6 3.0 22 36-57 11-32 (191)
262 1b0u_A Histidine permease; ABC 94.1 0.025 8.4E-07 56.0 3.2 23 36-58 34-56 (262)
263 2onk_A Molybdate/tungstate ABC 94.1 0.026 8.7E-07 55.2 3.2 24 35-58 25-48 (240)
264 2pze_A Cystic fibrosis transme 94.1 0.026 8.8E-07 54.7 3.2 23 36-58 36-58 (229)
265 1ji0_A ABC transporter; ATP bi 93.9 0.028 9.6E-07 54.8 3.2 23 36-58 34-56 (240)
266 2cbz_A Multidrug resistance-as 93.9 0.026 8.8E-07 55.0 2.9 23 36-58 33-55 (237)
267 2oap_1 GSPE-2, type II secreti 93.9 0.025 8.6E-07 61.5 3.1 31 36-68 262-292 (511)
268 1np6_A Molybdopterin-guanine d 93.9 0.026 9E-07 52.2 2.8 25 33-57 5-29 (174)
269 2ff7_A Alpha-hemolysin translo 93.9 0.031 1.1E-06 54.8 3.4 23 36-58 37-59 (247)
270 3tr0_A Guanylate kinase, GMP k 93.9 0.023 7.8E-07 53.4 2.3 23 35-57 8-30 (205)
271 1vpl_A ABC transporter, ATP-bi 93.8 0.03 1E-06 55.3 3.2 23 36-58 43-65 (256)
272 3c8u_A Fructokinase; YP_612366 93.8 0.023 7.8E-07 53.9 2.3 24 34-57 22-45 (208)
273 1s96_A Guanylate kinase, GMP k 93.8 0.024 8E-07 54.6 2.3 25 34-58 16-40 (219)
274 2olj_A Amino acid ABC transpor 93.8 0.03 1E-06 55.4 3.2 23 36-58 52-74 (263)
275 2nq2_C Hypothetical ABC transp 93.7 0.031 1.1E-06 55.0 3.2 31 36-68 33-63 (253)
276 2ixe_A Antigen peptide transpo 93.7 0.035 1.2E-06 55.2 3.4 23 36-58 47-69 (271)
277 2d2e_A SUFC protein; ABC-ATPas 93.7 0.03 1E-06 54.9 2.9 22 36-57 31-52 (250)
278 3a00_A Guanylate kinase, GMP k 93.6 0.027 9.1E-07 52.4 2.3 22 36-57 3-24 (186)
279 1z6g_A Guanylate kinase; struc 93.6 0.027 9.2E-07 54.0 2.4 22 36-57 25-46 (218)
280 2ihy_A ABC transporter, ATP-bi 93.6 0.036 1.2E-06 55.4 3.4 23 36-58 49-71 (279)
281 2yz2_A Putative ABC transporte 93.6 0.035 1.2E-06 55.1 3.2 23 36-58 35-57 (266)
282 3nh6_A ATP-binding cassette SU 93.3 0.03 1E-06 56.7 2.3 23 36-58 82-104 (306)
283 2zu0_C Probable ATP-dependent 93.3 0.038 1.3E-06 54.9 2.9 22 36-57 48-69 (267)
284 3l82_B F-box only protein 4; T 93.2 0.13 4.4E-06 48.9 6.2 96 159-255 113-218 (227)
285 4gp7_A Metallophosphoesterase; 93.2 0.044 1.5E-06 50.2 3.0 21 36-56 11-31 (171)
286 2qor_A Guanylate kinase; phosp 93.1 0.031 1.1E-06 52.8 1.9 25 33-57 11-35 (204)
287 2qi9_C Vitamin B12 import ATP- 93.0 0.052 1.8E-06 53.3 3.4 23 36-58 28-50 (249)
288 2yv5_A YJEQ protein; hydrolase 93.0 0.063 2.1E-06 54.2 4.0 22 35-57 166-187 (302)
289 2f1r_A Molybdopterin-guanine d 92.9 0.023 7.7E-07 52.5 0.6 24 34-57 2-25 (171)
290 1kag_A SKI, shikimate kinase I 92.9 0.04 1.4E-06 50.1 2.3 23 35-57 5-27 (173)
291 1htw_A HI0065; nucleotide-bind 92.9 0.042 1.5E-06 49.9 2.4 22 36-57 35-56 (158)
292 2ghi_A Transport protein; mult 92.9 0.053 1.8E-06 53.5 3.3 23 36-58 48-70 (260)
293 3asz_A Uridine kinase; cytidin 92.9 0.041 1.4E-06 52.0 2.4 22 36-57 8-29 (211)
294 3ec2_A DNA replication protein 92.8 0.075 2.6E-06 48.8 4.0 41 6-57 21-61 (180)
295 2eyu_A Twitching motility prot 92.8 0.043 1.5E-06 54.2 2.4 23 35-57 26-48 (261)
296 2j41_A Guanylate kinase; GMP, 92.8 0.046 1.6E-06 51.3 2.5 24 35-58 7-30 (207)
297 2v9p_A Replication protein E1; 92.7 0.045 1.5E-06 55.4 2.5 23 35-57 127-149 (305)
298 3ec1_A YQEH GTPase; atnos1, at 92.7 0.056 1.9E-06 56.3 3.3 119 160-289 60-185 (369)
299 2bbs_A Cystic fibrosis transme 92.5 0.056 1.9E-06 54.3 2.8 23 36-58 66-88 (290)
300 2bbw_A Adenylate kinase 4, AK4 92.5 0.069 2.3E-06 52.0 3.4 25 34-58 27-54 (246)
301 3b85_A Phosphate starvation-in 92.4 0.045 1.6E-06 52.1 2.0 30 36-68 24-53 (208)
302 4eun_A Thermoresistant glucoki 92.4 0.051 1.7E-06 51.1 2.3 23 35-57 30-52 (200)
303 2bdt_A BH3686; alpha-beta prot 92.4 0.053 1.8E-06 50.3 2.4 21 36-56 4-24 (189)
304 3lw7_A Adenylate kinase relate 92.2 0.076 2.6E-06 47.9 3.2 20 35-54 2-21 (179)
305 2pjz_A Hypothetical protein ST 92.2 0.077 2.6E-06 52.5 3.4 23 36-58 32-54 (263)
306 3fvq_A Fe(3+) IONS import ATP- 92.2 0.067 2.3E-06 55.3 3.0 23 36-58 32-54 (359)
307 3tui_C Methionine import ATP-b 92.1 0.074 2.5E-06 55.1 3.2 24 35-58 55-78 (366)
308 2yyz_A Sugar ABC transporter, 92.0 0.075 2.6E-06 55.0 3.2 23 36-58 31-53 (359)
309 2it1_A 362AA long hypothetical 92.0 0.074 2.5E-06 55.1 3.2 23 36-58 31-53 (362)
310 3kb2_A SPBC2 prophage-derived 92.0 0.083 2.8E-06 47.7 3.2 22 35-56 2-23 (173)
311 1xjc_A MOBB protein homolog; s 92.0 0.091 3.1E-06 48.3 3.4 25 33-57 3-27 (169)
312 1z47_A CYSA, putative ABC-tran 92.0 0.078 2.7E-06 54.8 3.2 23 36-58 43-65 (355)
313 3aez_A Pantothenate kinase; tr 91.9 0.06 2.1E-06 54.7 2.3 23 35-57 91-113 (312)
314 4a74_A DNA repair and recombin 91.9 0.06 2.1E-06 51.3 2.2 30 36-65 27-56 (231)
315 1g29_1 MALK, maltose transport 91.9 0.079 2.7E-06 55.2 3.2 23 36-58 31-53 (372)
316 1knq_A Gluconate kinase; ALFA/ 91.9 0.066 2.2E-06 48.9 2.4 24 34-57 8-31 (175)
317 1t9h_A YLOQ, probable GTPase E 91.9 0.074 2.5E-06 53.8 2.9 54 165-218 80-133 (307)
318 3lnc_A Guanylate kinase, GMP k 91.8 0.054 1.8E-06 52.1 1.7 23 35-57 28-51 (231)
319 2i3b_A HCR-ntpase, human cance 91.8 0.067 2.3E-06 50.1 2.3 22 36-57 3-24 (189)
320 3kta_A Chromosome segregation 91.7 0.065 2.2E-06 49.3 2.1 24 34-57 26-49 (182)
321 1v43_A Sugar-binding transport 91.7 0.086 2.9E-06 54.9 3.2 23 36-58 39-61 (372)
322 1cke_A CK, MSSA, protein (cyti 91.6 0.078 2.7E-06 50.5 2.7 23 35-57 6-28 (227)
323 3jvv_A Twitching mobility prot 91.6 0.069 2.4E-06 55.3 2.4 22 36-57 125-146 (356)
324 3rlf_A Maltose/maltodextrin im 91.6 0.09 3.1E-06 54.8 3.2 23 36-58 31-53 (381)
325 3uie_A Adenylyl-sulfate kinase 91.4 0.078 2.7E-06 49.8 2.4 24 34-57 25-48 (200)
326 1odf_A YGR205W, hypothetical 3 91.3 0.2 7E-06 50.1 5.4 24 34-57 31-54 (290)
327 3d31_A Sulfate/molybdate ABC t 91.2 0.073 2.5E-06 54.9 2.1 23 36-58 28-50 (348)
328 4e22_A Cytidylate kinase; P-lo 91.1 0.11 3.7E-06 50.9 3.2 26 34-59 27-55 (252)
329 1jjv_A Dephospho-COA kinase; P 91.0 0.11 3.9E-06 48.7 3.1 21 36-56 4-24 (206)
330 2if2_A Dephospho-COA kinase; a 90.9 0.091 3.1E-06 49.2 2.3 22 35-56 2-23 (204)
331 1lw7_A Transcriptional regulat 90.9 0.08 2.7E-06 54.9 2.1 24 35-58 171-194 (365)
332 2jeo_A Uridine-cytidine kinase 90.8 0.095 3.2E-06 51.0 2.4 22 36-57 27-48 (245)
333 1oxx_K GLCV, glucose, ABC tran 90.8 0.069 2.4E-06 55.2 1.4 23 36-58 33-55 (353)
334 1f2t_A RAD50 ABC-ATPase; DNA d 90.7 0.12 4E-06 46.3 2.7 22 34-55 23-44 (149)
335 2jaq_A Deoxyguanosine kinase; 90.7 0.13 4.5E-06 47.8 3.2 22 36-57 2-23 (205)
336 2qt1_A Nicotinamide riboside k 90.7 0.12 4.2E-06 48.5 3.0 23 35-57 22-44 (207)
337 3t61_A Gluconokinase; PSI-biol 90.7 0.1 3.6E-06 48.8 2.5 24 34-57 18-41 (202)
338 1ly1_A Polynucleotide kinase; 90.6 0.13 4.4E-06 46.8 2.9 21 36-56 4-24 (181)
339 1nij_A Hypothetical protein YJ 90.5 0.078 2.7E-06 54.0 1.4 26 33-58 3-28 (318)
340 2ewv_A Twitching motility prot 90.4 0.1 3.5E-06 54.3 2.3 22 36-57 138-159 (372)
341 2kjq_A DNAA-related protein; s 90.4 0.1 3.5E-06 46.8 2.0 25 33-57 35-59 (149)
342 1p9r_A General secretion pathw 90.3 0.11 3.7E-06 55.1 2.4 23 35-57 168-190 (418)
343 1sq5_A Pantothenate kinase; P- 90.1 0.11 3.6E-06 52.6 2.1 23 35-57 81-103 (308)
344 3vaa_A Shikimate kinase, SK; s 90.1 0.13 4.6E-06 48.0 2.7 23 34-56 25-47 (199)
345 1qhx_A CPT, protein (chloramph 90.0 0.15 5.3E-06 46.4 2.9 23 35-57 4-26 (178)
346 1rz3_A Hypothetical protein rb 90.0 0.12 4E-06 48.7 2.1 24 34-57 22-45 (201)
347 2ehv_A Hypothetical protein PH 89.9 0.12 4.2E-06 49.7 2.4 21 36-56 32-52 (251)
348 2vp4_A Deoxynucleoside kinase; 89.9 0.13 4.4E-06 49.5 2.4 23 35-57 21-43 (230)
349 2ga8_A Hypothetical 39.9 kDa p 89.8 0.31 1E-05 50.2 5.3 47 1-57 1-47 (359)
350 3gd7_A Fusion complex of cysti 89.8 0.14 4.9E-06 53.5 2.9 23 36-58 49-71 (390)
351 1nks_A Adenylate kinase; therm 89.8 0.15 5.1E-06 46.9 2.7 22 35-56 2-23 (194)
352 1kht_A Adenylate kinase; phosp 89.7 0.16 5.6E-06 46.6 2.9 22 35-56 4-25 (192)
353 3cnl_A YLQF, putative uncharac 89.7 0.12 4.2E-06 50.9 2.1 50 162-217 12-61 (262)
354 3trf_A Shikimate kinase, SK; a 89.7 0.19 6.4E-06 46.2 3.3 22 34-55 5-26 (185)
355 2npi_A Protein CLP1; CLP1-PCF1 89.6 0.13 4.4E-06 55.2 2.3 26 33-58 137-162 (460)
356 1y63_A LMAJ004144AAA protein; 89.5 0.2 6.8E-06 46.2 3.3 25 33-57 9-33 (184)
357 3l2o_B F-box only protein 4; s 89.4 0.49 1.7E-05 47.2 6.1 95 161-256 200-304 (312)
358 3tqc_A Pantothenate kinase; bi 89.3 0.15 5E-06 52.0 2.4 22 36-57 94-115 (321)
359 1via_A Shikimate kinase; struc 89.2 0.19 6.6E-06 45.7 3.0 22 35-56 5-26 (175)
360 3b5x_A Lipid A export ATP-bind 89.2 0.2 7E-06 55.3 3.6 23 36-58 371-393 (582)
361 2iyv_A Shikimate kinase, SK; t 89.2 0.19 6.6E-06 46.1 3.0 22 35-56 3-24 (184)
362 2rhm_A Putative kinase; P-loop 89.1 0.18 6.2E-06 46.4 2.7 22 35-56 6-27 (193)
363 4a82_A Cystic fibrosis transme 89.0 0.16 5.5E-06 56.1 2.6 23 36-58 369-391 (578)
364 1yqt_A RNAse L inhibitor; ATP- 89.0 0.25 8.7E-06 54.0 4.2 31 36-68 314-344 (538)
365 1yqt_A RNAse L inhibitor; ATP- 89.0 0.24 8.2E-06 54.2 3.9 23 36-58 49-71 (538)
366 3ozx_A RNAse L inhibitor; ATP 88.9 0.24 8.3E-06 54.1 3.9 30 36-67 296-325 (538)
367 3iij_A Coilin-interacting nucl 88.9 0.24 8.1E-06 45.3 3.3 23 33-55 10-32 (180)
368 3cm0_A Adenylate kinase; ATP-b 88.9 0.21 7E-06 45.9 2.9 20 36-55 6-25 (186)
369 3euj_A Chromosome partition pr 88.8 0.15 5.1E-06 54.8 2.1 24 35-58 30-53 (483)
370 3qf7_A RAD50; ABC-ATPase, ATPa 88.8 0.22 7.4E-06 51.7 3.3 24 33-56 22-45 (365)
371 3qf4_A ABC transporter, ATP-bi 88.8 0.18 6.3E-06 55.8 2.9 23 36-58 371-393 (587)
372 2plr_A DTMP kinase, probable t 88.7 0.21 7.3E-06 46.7 2.9 22 35-56 5-26 (213)
373 2yl4_A ATP-binding cassette SU 88.7 0.18 6.1E-06 56.0 2.7 23 36-58 372-394 (595)
374 3qf4_B Uncharacterized ABC tra 88.7 0.19 6.4E-06 55.8 2.9 23 36-58 383-405 (598)
375 2v54_A DTMP kinase, thymidylat 88.6 0.22 7.5E-06 46.4 2.9 23 35-57 5-27 (204)
376 3fb4_A Adenylate kinase; psych 88.6 0.24 8E-06 46.8 3.2 21 36-56 2-22 (216)
377 3b60_A Lipid A export ATP-bind 88.5 0.21 7.2E-06 55.2 3.2 23 36-58 371-393 (582)
378 2c95_A Adenylate kinase 1; tra 88.5 0.23 8E-06 45.8 3.0 23 34-56 9-31 (196)
379 3bk7_A ABC transporter ATP-bin 88.4 0.29 1E-05 54.3 4.2 31 36-68 384-414 (607)
380 3j16_B RLI1P; ribosome recycli 88.2 0.32 1.1E-05 54.0 4.4 23 36-58 105-127 (608)
381 1jbk_A CLPB protein; beta barr 88.2 0.55 1.9E-05 42.5 5.4 24 34-57 43-66 (195)
382 2pez_A Bifunctional 3'-phospho 88.2 0.2 6.9E-06 45.8 2.4 23 35-57 6-28 (179)
383 3dl0_A Adenylate kinase; phosp 88.1 0.26 8.9E-06 46.5 3.2 21 36-56 2-22 (216)
384 2z0h_A DTMP kinase, thymidylat 88.1 0.25 8.5E-06 45.7 3.0 21 36-56 2-22 (197)
385 2cdn_A Adenylate kinase; phosp 88.1 0.32 1.1E-05 45.3 3.8 24 33-56 18-42 (201)
386 2x8a_A Nuclear valosin-contain 88.0 0.2 6.9E-06 49.7 2.4 21 37-57 47-67 (274)
387 1ixz_A ATP-dependent metallopr 88.0 0.2 6.9E-06 48.7 2.4 22 36-57 51-72 (254)
388 1e6c_A Shikimate kinase; phosp 88.0 0.27 9.2E-06 44.4 3.0 22 35-56 3-24 (173)
389 3bk7_A ABC transporter ATP-bin 87.9 0.3 1E-05 54.2 3.9 23 36-58 119-141 (607)
390 2w0m_A SSO2452; RECA, SSPF, un 87.8 0.22 7.4E-06 47.2 2.4 22 36-57 25-46 (235)
391 1gtv_A TMK, thymidylate kinase 87.7 0.12 4.3E-06 48.5 0.6 22 36-57 2-23 (214)
392 2yvu_A Probable adenylyl-sulfa 87.6 0.28 9.6E-06 45.1 2.9 24 34-57 13-36 (186)
393 2wwf_A Thymidilate kinase, put 87.6 0.37 1.3E-05 45.1 3.9 23 34-56 10-32 (212)
394 2pbr_A DTMP kinase, thymidylat 87.5 0.28 9.7E-06 45.1 2.9 21 36-56 2-22 (195)
395 2bwj_A Adenylate kinase 5; pho 87.5 0.29 9.9E-06 45.3 3.0 23 34-56 12-34 (199)
396 1nn5_A Similar to deoxythymidy 87.4 0.27 9.2E-06 46.1 2.7 22 35-56 10-31 (215)
397 1tev_A UMP-CMP kinase; ploop, 87.4 0.29 1E-05 45.0 2.9 22 35-56 4-25 (196)
398 1cr0_A DNA primase/helicase; R 87.4 0.22 7.4E-06 49.8 2.2 22 36-57 37-58 (296)
399 4b4t_L 26S protease subunit RP 87.3 2.8 9.4E-05 44.4 10.7 23 35-57 216-238 (437)
400 2pt5_A Shikimate kinase, SK; a 87.3 0.33 1.1E-05 43.7 3.1 21 36-56 2-22 (168)
401 3qks_A DNA double-strand break 87.2 0.29 1E-05 46.1 2.9 22 34-55 23-44 (203)
402 3nwj_A ATSK2; P loop, shikimat 87.1 0.26 8.8E-06 48.3 2.4 23 34-56 48-70 (250)
403 1zd8_A GTP:AMP phosphotransfer 87.0 0.32 1.1E-05 46.4 3.0 23 34-56 7-29 (227)
404 3ozx_A RNAse L inhibitor; ATP 86.9 0.31 1E-05 53.3 3.2 23 36-58 27-49 (538)
405 3a4m_A L-seryl-tRNA(SEC) kinas 86.7 0.34 1.2E-05 47.4 3.2 23 34-56 4-26 (260)
406 1gvn_B Zeta; postsegregational 86.6 0.72 2.5E-05 46.0 5.5 21 36-56 35-55 (287)
407 1iy2_A ATP-dependent metallopr 86.5 0.28 9.6E-06 48.5 2.4 21 37-57 76-96 (278)
408 1in4_A RUVB, holliday junction 86.4 0.31 1.1E-05 49.7 2.8 24 34-57 51-74 (334)
409 3ake_A Cytidylate kinase; CMP 86.4 0.4 1.4E-05 44.6 3.3 22 35-56 3-24 (208)
410 1e4v_A Adenylate kinase; trans 86.4 0.35 1.2E-05 45.6 2.9 21 36-56 2-22 (214)
411 1zak_A Adenylate kinase; ATP:A 86.3 0.34 1.2E-05 46.0 2.8 23 34-56 5-27 (222)
412 1qf9_A UMP/CMP kinase, protein 86.3 0.34 1.2E-05 44.4 2.7 22 35-56 7-28 (194)
413 1vht_A Dephospho-COA kinase; s 86.3 0.35 1.2E-05 45.7 2.9 22 35-56 5-26 (218)
414 1ukz_A Uridylate kinase; trans 86.1 0.41 1.4E-05 44.6 3.2 23 34-56 15-37 (203)
415 1aky_A Adenylate kinase; ATP:A 86.1 0.41 1.4E-05 45.4 3.3 23 34-56 4-26 (220)
416 1uf9_A TT1252 protein; P-loop, 85.9 0.36 1.2E-05 44.8 2.7 24 34-57 8-31 (203)
417 2vli_A Antibiotic resistance p 85.8 0.29 9.9E-06 44.6 1.9 23 34-56 5-27 (183)
418 1svm_A Large T antigen; AAA+ f 85.8 0.31 1.1E-05 50.7 2.4 23 35-57 170-192 (377)
419 3exa_A TRNA delta(2)-isopenten 85.6 0.49 1.7E-05 47.8 3.6 24 34-57 3-26 (322)
420 3j16_B RLI1P; ribosome recycli 85.5 0.46 1.6E-05 52.7 3.8 22 37-58 381-402 (608)
421 1m7g_A Adenylylsulfate kinase; 85.4 0.35 1.2E-05 45.6 2.4 23 35-57 26-48 (211)
422 1qhl_A Protein (cell division 85.3 0.077 2.7E-06 51.2 -2.3 23 36-58 29-51 (227)
423 2cvh_A DNA repair and recombin 85.2 0.36 1.2E-05 45.3 2.4 22 35-56 21-42 (220)
424 2chg_A Replication factor C sm 85.1 0.64 2.2E-05 43.2 4.1 24 34-57 38-61 (226)
425 2xb4_A Adenylate kinase; ATP-b 85.1 0.47 1.6E-05 45.2 3.1 21 36-56 2-22 (223)
426 2ze6_A Isopentenyl transferase 85.1 0.36 1.2E-05 47.1 2.4 22 35-56 2-23 (253)
427 3tlx_A Adenylate kinase 2; str 85.0 1 3.5E-05 43.5 5.6 23 34-56 29-51 (243)
428 1fnn_A CDC6P, cell division co 84.9 0.88 3E-05 46.7 5.4 24 34-57 44-67 (389)
429 1n0w_A DNA repair protein RAD5 84.9 0.38 1.3E-05 46.0 2.4 23 35-57 25-47 (243)
430 2dhr_A FTSH; AAA+ protein, hex 84.7 0.83 2.8E-05 49.3 5.2 49 6-57 38-87 (499)
431 3qkt_A DNA double-strand break 84.6 0.42 1.4E-05 48.8 2.7 23 34-56 23-45 (339)
432 1zuh_A Shikimate kinase; alpha 84.5 0.51 1.7E-05 42.5 3.0 24 33-56 6-29 (168)
433 2p65_A Hypothetical protein PF 84.4 0.6 2.1E-05 42.1 3.4 24 34-57 43-66 (187)
434 2obl_A ESCN; ATPase, hydrolase 84.4 0.39 1.3E-05 49.4 2.3 24 35-58 72-95 (347)
435 3thx_A DNA mismatch repair pro 84.1 3.9 0.00013 47.6 10.7 19 36-54 664-682 (934)
436 1sxj_E Activator 1 40 kDa subu 84.0 0.42 1.4E-05 48.7 2.4 25 33-57 35-59 (354)
437 2iw3_A Elongation factor 3A; a 83.9 0.35 1.2E-05 56.4 1.9 23 36-58 701-723 (986)
438 4eaq_A DTMP kinase, thymidylat 83.9 0.53 1.8E-05 45.2 2.9 23 35-57 27-49 (229)
439 3a8t_A Adenylate isopentenyltr 83.8 0.77 2.6E-05 46.8 4.2 23 35-57 41-63 (339)
440 2dpy_A FLII, flagellum-specifi 83.8 0.42 1.4E-05 50.8 2.3 24 35-58 158-181 (438)
441 3fkq_A NTRC-like two-domain pr 83.8 19 0.00064 36.9 15.0 92 134-244 259-351 (373)
442 3be4_A Adenylate kinase; malar 83.7 0.57 1.9E-05 44.3 3.0 23 34-56 5-27 (217)
443 4f4c_A Multidrug resistance pr 83.7 0.49 1.7E-05 57.5 3.1 23 36-58 446-468 (1321)
444 1ak2_A Adenylate kinase isoenz 83.6 0.61 2.1E-05 44.7 3.3 23 34-56 16-38 (233)
445 2p5t_B PEZT; postsegregational 83.5 0.39 1.3E-05 46.8 1.8 23 35-57 33-55 (253)
446 4f4c_A Multidrug resistance pr 83.5 0.44 1.5E-05 57.9 2.6 23 36-58 1107-1129(1321)
447 2grj_A Dephospho-COA kinase; T 83.4 0.59 2E-05 43.7 2.9 24 33-56 11-34 (192)
448 1w1w_A Structural maintenance 83.4 0.5 1.7E-05 50.0 2.7 24 35-58 27-50 (430)
449 2o5v_A DNA replication and rep 83.3 0.46 1.6E-05 49.0 2.4 25 33-57 25-49 (359)
450 3g5u_A MCG1178, multidrug resi 83.0 0.56 1.9E-05 56.8 3.2 23 36-58 418-440 (1284)
451 1e69_A Chromosome segregation 82.8 0.48 1.7E-05 48.0 2.3 24 34-57 24-47 (322)
452 2w58_A DNAI, primosome compone 82.6 1.8 6.3E-05 39.9 6.1 23 35-57 55-77 (202)
453 3r20_A Cytidylate kinase; stru 82.4 0.74 2.5E-05 44.4 3.3 22 35-56 10-31 (233)
454 3auy_A DNA double-strand break 82.4 0.59 2E-05 48.4 2.7 23 33-55 24-46 (371)
455 1sxj_C Activator 1 40 kDa subu 82.3 0.85 2.9E-05 46.4 3.9 25 33-57 45-69 (340)
456 1nlf_A Regulatory protein REPA 82.3 0.52 1.8E-05 46.6 2.2 21 36-56 32-52 (279)
457 1q3t_A Cytidylate kinase; nucl 82.2 0.6 2.1E-05 44.8 2.6 24 33-56 15-38 (236)
458 4aby_A DNA repair protein RECN 82.2 0.22 7.4E-06 52.4 -0.7 24 34-57 60-83 (415)
459 3foz_A TRNA delta(2)-isopenten 82.1 0.67 2.3E-05 46.7 2.9 22 35-56 11-32 (316)
460 1lv7_A FTSH; alpha/beta domain 82.0 0.57 2E-05 45.5 2.3 22 36-57 47-68 (257)
461 3bos_A Putative DNA replicatio 81.9 0.8 2.7E-05 43.3 3.3 24 34-57 52-75 (242)
462 1ltq_A Polynucleotide kinase; 81.6 0.71 2.4E-05 45.9 2.9 21 36-56 4-24 (301)
463 2rcn_A Probable GTPase ENGC; Y 81.5 0.56 1.9E-05 48.4 2.1 49 169-218 128-176 (358)
464 2ius_A DNA translocase FTSK; n 81.4 0.7 2.4E-05 50.0 2.9 24 33-56 166-189 (512)
465 3co5_A Putative two-component 81.4 1.4 4.9E-05 38.5 4.6 22 36-57 29-50 (143)
466 1uj2_A Uridine-cytidine kinase 81.3 0.76 2.6E-05 44.6 3.0 22 35-56 23-44 (252)
467 3k9g_A PF-32 protein; ssgcid, 81.1 5.7 0.00019 38.4 9.3 89 134-243 144-233 (267)
468 3sr0_A Adenylate kinase; phosp 81.1 0.87 3E-05 43.0 3.2 22 36-57 2-23 (206)
469 1d2n_A N-ethylmaleimide-sensit 80.7 1.4 4.7E-05 43.1 4.6 24 34-57 64-87 (272)
470 2f6r_A COA synthase, bifunctio 80.5 0.97 3.3E-05 44.8 3.5 20 36-55 77-96 (281)
471 1tue_A Replication protein E1; 80.4 0.77 2.6E-05 43.4 2.5 21 36-56 60-80 (212)
472 3n70_A Transport activator; si 79.8 2.4 8.3E-05 37.1 5.5 22 36-57 26-47 (145)
473 3h4m_A Proteasome-activating n 79.5 1.7 5.9E-05 42.6 4.9 24 34-57 51-74 (285)
474 3cr8_A Sulfate adenylyltranfer 79.4 0.51 1.7E-05 51.7 1.0 22 36-57 371-392 (552)
475 3umf_A Adenylate kinase; rossm 79.1 1.1 3.8E-05 42.7 3.2 23 35-57 30-52 (217)
476 2ph1_A Nucleotide-binding prot 78.6 5.4 0.00018 38.6 8.2 66 134-214 128-194 (262)
477 1p5z_B DCK, deoxycytidine kina 78.5 0.85 2.9E-05 44.5 2.3 25 33-57 23-47 (263)
478 2ce7_A Cell division protein F 78.5 1.7 5.8E-05 46.6 4.7 22 36-57 51-72 (476)
479 3g5u_A MCG1178, multidrug resi 78.3 1.1 3.6E-05 54.4 3.4 23 36-58 1061-1083(1284)
480 1njg_A DNA polymerase III subu 78.1 1.3 4.3E-05 41.6 3.3 23 35-57 46-68 (250)
481 2qmh_A HPR kinase/phosphorylas 77.5 1.3 4.4E-05 41.7 3.0 24 34-57 34-57 (205)
482 2iw3_A Elongation factor 3A; a 77.3 0.97 3.3E-05 52.6 2.6 23 36-58 463-485 (986)
483 2r62_A Cell division protease 77.2 1.4 4.9E-05 42.8 3.5 22 36-57 46-67 (268)
484 2ocp_A DGK, deoxyguanosine kin 77.1 1.2 3.9E-05 42.9 2.7 22 36-57 4-25 (241)
485 3cf0_A Transitional endoplasmi 77.1 1.8 6E-05 43.2 4.2 23 35-57 50-72 (301)
486 3zvl_A Bifunctional polynucleo 77.1 1.2 4E-05 47.0 2.9 23 34-56 258-280 (416)
487 3d3q_A TRNA delta(2)-isopenten 76.9 1.2 4.2E-05 45.4 2.9 23 35-57 8-30 (340)
488 3t15_A Ribulose bisphosphate c 76.9 1.4 4.7E-05 44.0 3.3 24 33-56 34-58 (293)
489 3ux8_A Excinuclease ABC, A sub 76.7 0.98 3.3E-05 50.7 2.4 20 36-55 350-369 (670)
490 1a7j_A Phosphoribulokinase; tr 76.5 0.82 2.8E-05 45.6 1.5 23 34-56 5-27 (290)
491 2dr3_A UPF0273 protein PH0284; 76.4 1.2 4.2E-05 42.4 2.7 21 36-56 25-45 (247)
492 4ag6_A VIRB4 ATPase, type IV s 76.3 1.3 4.4E-05 46.0 3.0 26 33-58 34-59 (392)
493 1sxj_D Activator 1 41 kDa subu 76.2 1.9 6.6E-05 43.5 4.3 25 33-57 57-81 (353)
494 1pzn_A RAD51, DNA repair and r 76.2 1 3.5E-05 46.2 2.2 23 36-58 133-155 (349)
495 1bif_A 6-phosphofructo-2-kinas 75.8 1.4 4.7E-05 47.2 3.1 22 36-57 41-62 (469)
496 2qz4_A Paraplegin; AAA+, SPG7, 75.7 3.6 0.00012 39.5 5.9 24 34-57 39-62 (262)
497 2iut_A DNA translocase FTSK; n 75.4 1.4 4.7E-05 48.2 3.0 24 33-56 213-236 (574)
498 3b9p_A CG5977-PA, isoform A; A 75.4 1.2 4E-05 44.1 2.3 24 34-57 54-77 (297)
499 3pfi_A Holliday junction ATP-d 75.2 2.8 9.7E-05 42.2 5.2 25 33-57 54-78 (338)
500 2h92_A Cytidylate kinase; ross 74.9 1.6 5.4E-05 41.0 2.9 22 35-56 4-25 (219)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=4.1e-96 Score=827.11 Aligned_cols=593 Identities=38% Similarity=0.639 Sum_probs=522.0
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecC
Q 007296 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ 80 (609)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (609)
|++||+++|+|||.+..+|... ++++|+|+|||.+|||||||||+|+|.+|||++.++|||||+++++.+.+
T Consensus 26 ~~~li~~inkl~d~l~~lg~~~--------~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~ 97 (772)
T 3zvr_A 26 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 97 (772)
T ss_dssp GGGHHHHHHHHHHHHHTTTCCG--------GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhcCccc--------cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCC
Confidence 7899999999999999999642 25899999999999999999999999999999999999999999999876
Q ss_pred CCccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHH
Q 007296 81 EGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQD 160 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~ 160 (609)
. +|+.+.+..+..+.+++++..+|+..++...|.+++|+.+++.++|++|+.++++||||||+...+..+||.++...
T Consensus 98 ~--~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~ 175 (772)
T 3zvr_A 98 T--EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ 175 (772)
T ss_dssp S--CEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHH
T ss_pred c--chhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHH
Confidence 4 78999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEe
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 240 (609)
+..++..|+.....+||+|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.+...++++||..|+
T Consensus 176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV 255 (772)
T 3zvr_A 176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 255 (772)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECC
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceE
Confidence 99999999987666778888999999999987899999999999999999999998877666777666677788999999
Q ss_pred eCChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHcC
Q 007296 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAELTRLG 320 (609)
Q Consensus 241 ~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg 320 (609)
++|+.......++.++...|..||..+|+|..+.++.|+..|++.|++.|..||+++||+++.+|+.++..++.+++++|
T Consensus 256 ~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~ 335 (772)
T 3zvr_A 256 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYK 335 (772)
T ss_dssp CCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhC
Confidence 99997766667788888889999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHHHHHhhccCC--------CCCchhHhHHhhhhHHhhcccCccccCChhHHHHHHHhh
Q 007296 321 KPIANDAGGKLYTAMEISRAFDQIFKEHLDGVR--------PGGDKIYGVFDNQLPAGLKRLQFDKHLSMDNVRKLITEA 392 (609)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~--------~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 392 (609)
.++++++.++..++++++++|++.|.++++|.+ .||+||+++|++.|+..+.++++++.+++++|+++|+|+
T Consensus 336 ~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~ 415 (772)
T 3zvr_A 336 NFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNI 415 (772)
T ss_dssp HHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHC
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHHHhC
Confidence 888877777777899999999999999999998 588999999999999999999999999999999999999
Q ss_pred cCCCCCCCCchHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHHHHHHHHHHHHH
Q 007296 393 DGYQPHLIAPEQGYRRLIESCLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDESR 472 (609)
Q Consensus 393 ~g~~p~~~~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~ 472 (609)
+|++|++|+|+.+|+.||++||++|++||++||+.|+++|.+++++|. .+|.|||+|++++.+++.+.|++++.+|+
T Consensus 416 ~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~~iv~~~Lre~~~~t~ 492 (772)
T 3zvr_A 416 HDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEMERIVTTHIREREGRTK 492 (772)
T ss_dssp C------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999884 48999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccchh---hhccC--c-------------hh----h-h------------hCCCC-------------
Q 007296 473 RATLQLVDMECCYLTVE---FFRKL--P-------------QD----A-E------------KGGNP------------- 504 (609)
Q Consensus 473 ~~i~~li~~E~~y~~td---~~~~~--~-------------~~----~-~------------~~~~~------------- 504 (609)
++|.+||+||++||||+ |.+.. . ++ + . ++|+.
T Consensus 493 ~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (772)
T 3zvr_A 493 EQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNKKKTSGNQDEILVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSW 572 (772)
T ss_dssp HHHHHHHHHHHTCCCTTCTTCCCC---------------------CCEEEEEEEEESSSCCC---CCEEEEEEESSEEEE
T ss_pred HHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhhcccccCCccccceeeeeeeecccccccCCCccceeecccccccc
Confidence 99999999999999995 33210 0 00 0 0 00000
Q ss_pred ---------------------------------------CCCC------------------------------C-C----
Q 007296 505 ---------------------------------------THSI------------------------------F-D---- 510 (609)
Q Consensus 505 ---------------------------------------~~~~------------------------------~-~---- 510 (609)
.... . +
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (772)
T 3zvr_A 573 YKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERVGD 652 (772)
T ss_dssp ESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC----
T ss_pred ccchhhhcccccccccccccchhhhccccccccccccCCccccccchhhhhhhhccccccchhhHHhhhhcccCCccccc
Confidence 0000 0 0
Q ss_pred -----C------------CcH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 007296 511 -----R------------YSD---TYLRRIGSTVLSYVNMVCASLRHSIPKSVVYCQVREAKRSLLDYFFAELGKKEIKQ 570 (609)
Q Consensus 511 -----~------------~~~---~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~lq~~l~~~L~~~~~~~ 570 (609)
+ +++ -+++.|+.+|+|||.||+|++.|+|||+|||||||.+++.++.+|+..||+.+.
T Consensus 653 ~~~~~~~~~~~~~~~~~~~~~q~~~q~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~~~ly~~~~-- 730 (772)
T 3zvr_A 653 KEKASETEENGSDSFMHSMDPQLERQVETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELLANLYSCGD-- 730 (772)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTCC--
T ss_pred cccccccCCccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--
Confidence 0 001 135789999999999999999999999999999999999999999999999875
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 007296 571 LSSLLDEDPAVMQRRTNLAKRLELYRSAQSEIEMVAWD 608 (609)
Q Consensus 571 ~~~ll~E~~~i~~kR~~l~~~~~~L~~A~~~l~~~~~~ 608 (609)
+++||.|+|++++||++|.+++++|++|.++|++|+++
T Consensus 731 ~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i~~~ 768 (772)
T 3zvr_A 731 QNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDINTT 768 (772)
T ss_dssp TTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999764
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.8e-86 Score=744.75 Aligned_cols=565 Identities=27% Similarity=0.404 Sum_probs=483.0
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhc
Q 007296 10 KIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFM 89 (609)
Q Consensus 10 ~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~ 89 (609)
++.|.+..+|... .+++|+|+|||++||||||||++|+|. .+|+++|.||++|..+.+.+......|....
T Consensus 29 ~~id~l~~~gv~~--------~l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i 99 (608)
T 3szr_A 29 DLIDSLRALGVEQ--------DLALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNEDKWRGKV 99 (608)
T ss_dssp HHHHHHHHHSCCS--------SCCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSSCCEEEE
T ss_pred HHHHHHHhCCCCC--------cccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccccceeEE
Confidence 4456677777531 258999999999999999999999998 4699999999999999888766544443322
Q ss_pred cC--CCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHH
Q 007296 90 HL--PRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRS 167 (609)
Q Consensus 90 ~~--~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~ 167 (609)
+- ....+.++..+.+.+........+.+.+++.+.+.+.+.++..|+++|+|+||+...+..+++.+....+.+++..
T Consensus 100 ~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 100 SYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp SCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred eeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 21 1245678888888888887777788889999999999999999999999999999998889999999999999999
Q ss_pred hhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhccccccCCceeeEeeCChh
Q 007296 168 YIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKLRYPWIGVVNRSQA 245 (609)
Q Consensus 168 yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~ 245 (609)
|+.++.++++++++++.|.++++++++++.+++.|.|||+|+||+|++++++. +.+++.|...++++||++|+|+|++
T Consensus 180 ~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v~nr~~~ 259 (608)
T 3szr_A 180 YIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQ 259 (608)
T ss_dssp HTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECCCCSCTT
T ss_pred HHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEEecCchh
Confidence 99999999999999999999999999999999999999999999999988763 5788888999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHhccCCCCCcccc--ccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHcCCCC
Q 007296 246 DINKSVDMIAARRREHEYFKNSPEYGHLTD--RMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAELTRLGKPI 323 (609)
Q Consensus 246 ~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~--~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg~~~ 323 (609)
+++...+..++...|..||.+++||+.+.+ ++|+++|+++|+++|.+||+++||.++.+|+..+.++++||..||.++
T Consensus 260 ~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~~~ 339 (608)
T 3szr_A 260 EIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGVDI 339 (608)
T ss_dssp CTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred hcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999987754 899999999999999999999999999999999999999999999998
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHhhccCCCCC---chhHhHHhhhhHHhhcccCc----cccCChhHHHHHHHhhcCCC
Q 007296 324 ANDAGGKLYTAMEISRAFDQIFKEHLDGVRPGG---DKIYGVFDNQLPAGLKRLQF----DKHLSMDNVRKLITEADGYQ 396 (609)
Q Consensus 324 ~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~---~~i~~~f~~~~~~~~~~~~~----~~~~~~~~i~~~i~~~~g~~ 396 (609)
++++++++.++++++++|++.++++++|.+..+ .+++..+++.|..+...+.. ......++|++.++++.|.+
T Consensus 340 ~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 419 (608)
T 3szr_A 340 PEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAE 419 (608)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHccCCC
Confidence 888888888999999999999999999997533 57777777777766544321 11234678999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007296 397 PHLIAPEQGYRRLIESCLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDESRRATL 476 (609)
Q Consensus 397 p~~~~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~ 476 (609)
+++|+|+.+|+.||++||++|++||.+|++.|++++..++.++.. .+|.|||+|++++.+++.++++++.++|+++|+
T Consensus 420 ~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~ 497 (608)
T 3szr_A 420 LPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIR 497 (608)
T ss_dssp SSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765 589999999999999999999999999999999
Q ss_pred HHHHHhcCccchhh-hccCchhhhhCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007296 477 QLVDMECCYLTVEF-FRKLPQDAEKGGNPTHSIFDRYSDTYLRRIGSTVLSYVNMVCASLRHSIPKSVVYCQVREAKRSL 555 (609)
Q Consensus 477 ~li~~E~~y~~td~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv~~~~~~l 555 (609)
++|+||+.||++|. |.. + ...+.+|+.+|+|||+||+||++|+|||+||||||+.+++.|
T Consensus 498 ~li~mE~~~~~~d~~~~~--------~-----------~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~l 558 (608)
T 3szr_A 498 LHFQMEQIVYGAFQSSSA--------T-----------DSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQL 558 (608)
T ss_dssp HHHHHHHHCCCC----------------------------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHhhccccCCccccC--------C-----------CccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999998863 320 0 111357999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 007296 556 LDYFFAELGKKEIKQLSSLLDEDPAVMQRRTNLAKRLELYRSAQSEIEMVA 606 (609)
Q Consensus 556 q~~l~~~L~~~~~~~~~~ll~E~~~i~~kR~~l~~~~~~L~~A~~~l~~~~ 606 (609)
|.+|++.||+.+. +++||+|||+|++||+.|++++++|++|+++|++|.
T Consensus 559 q~~l~~~l~~~~~--~~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~~~ 607 (608)
T 3szr_A 559 QKAMLQLLQDKDT--YSWLLKERSDTSDKRKFLKERLARLTQARRRLAQFP 607 (608)
T ss_dssp HHHHHTTTTCHHH--HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcchh--HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998765 999999999999999999999999999999999874
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=8.1e-53 Score=446.01 Aligned_cols=330 Identities=85% Similarity=1.276 Sum_probs=294.6
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecC
Q 007296 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ 80 (609)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (609)
||+|||++|+||++++.+|..+....|+..+..+|+|+|||++|||||||||+|+|.+|+|++.++|||+|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred ChhHHHHHHHHHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCC
Confidence 89999999999999999997655566777778999999999999999999999999999999999999999999998877
Q ss_pred CC-ccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHH
Q 007296 81 EG-KEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQ 159 (609)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~ 159 (609)
.. ..|+.+.+.++..+.+|+.++.++..++....|.+.+|+.+++.+++++|+.++++||||||+.+....+|+.++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 81 DGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVK 160 (360)
T ss_dssp SCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHH
T ss_pred CcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHH
Confidence 65 67888999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeE
Q 007296 160 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGV 239 (609)
Q Consensus 160 ~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 239 (609)
.+..++..|+++++++|+++++++.+..+++++.+++.+++.+.|+|+|+||+|+++++....+++++....+++||++|
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEE
Confidence 99999999999999999999999989888999999999999999999999999999888777888888888999999999
Q ss_pred eeCChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHc
Q 007296 240 VNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAELTRL 319 (609)
Q Consensus 240 ~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~l 319 (609)
+++|++++++..+..++...|..||.++++|..+.+++|+.+|+++|+++|.+||+++||.++.+|+..+.+++++|.+|
T Consensus 241 ~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~l 320 (360)
T 3t34_A 241 VNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRL 320 (360)
T ss_dssp CCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC----
T ss_pred EECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhh
Q 007296 320 GKPIANDAGGK 330 (609)
Q Consensus 320 g~~~~~~~~~~ 330 (609)
|+++++++.++
T Consensus 321 g~~~~~~~~~~ 331 (360)
T 3t34_A 321 GKPIAHGTDSR 331 (360)
T ss_dssp -----------
T ss_pred CCCCCCCHHHH
Confidence 99998776544
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=2.6e-48 Score=410.24 Aligned_cols=338 Identities=51% Similarity=0.821 Sum_probs=308.2
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecC
Q 007296 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ 80 (609)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (609)
|+.|++++|+|||.+..+|... .+++|+|+|||+||||||||+|+|+|.+|+|++.++||++|+++++.+.+
T Consensus 6 ~~~l~~~~~~l~d~l~~~g~~~--------~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~ 77 (353)
T 2x2e_A 6 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNAT 77 (353)
T ss_dssp CCSCHHHHHHHHHHHHTTTCGG--------GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHcCCCC--------CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCC
Confidence 8999999999999999998641 24799999999999999999999999999999999999999999998875
Q ss_pred CCccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHH
Q 007296 81 EGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQD 160 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~ 160 (609)
.+|++|.+.++..+++++.+..+++.++.++.|.+.+++...+.+++++|+..+++||||||+.+.+..+|+.++.+.
T Consensus 78 --~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~ 155 (353)
T 2x2e_A 78 --TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ 155 (353)
T ss_dssp --SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHH
T ss_pred --ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHH
Confidence 478999999999999999999999999999988889999999999999999999999999999998888889998899
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEe
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 240 (609)
+.+++..|+.+++++||+|++++.++.++++..+++.+++.+.|+++|+||+|+++++.+..+++++...++++||+.|+
T Consensus 156 ~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 156 IRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 235 (353)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEE
Confidence 99999999999999999999999999999988899999999999999999999998776667777777778889999999
Q ss_pred eCChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHcC
Q 007296 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAELTRLG 320 (609)
Q Consensus 241 ~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~eL~~lg 320 (609)
++|+.+.....++.+....|.+||+.++.|+...+++|+..|++.|++.|..|++++||++..+++..+..++.++..++
T Consensus 236 ~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~ 315 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYK 315 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99997776667777777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhhH--HHHHHHHHHHHHHHHHh
Q 007296 321 KPIANDAGGKL--YTAMEISRAFDQIFKEH 348 (609)
Q Consensus 321 ~~~~~~~~~~~--~~l~~~~~~f~~~~~~~ 348 (609)
..++.++..+. .++++++++|++.|...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 345 (353)
T 2x2e_A 316 NFRPDKHGTDSRVDEMLRMYHALKEALSII 345 (353)
T ss_dssp HHCCCSSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 87776654444 78999999999988654
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=6.8e-41 Score=347.75 Aligned_cols=309 Identities=52% Similarity=0.843 Sum_probs=246.2
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCC
Q 007296 2 DNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQE 81 (609)
Q Consensus 2 ~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~ 81 (609)
|+||+++|+|||+++.+|.. ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+.+.
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~---------~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~ 71 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD---------PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPI 71 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC---------TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCC
T ss_pred CchHHHHHHHHHHHHHcCCC---------CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCC
Confidence 57999999999999988853 147999999999999999999999999999999999999999999888632
Q ss_pred ------CccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCcc
Q 007296 82 ------GKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPE 155 (609)
Q Consensus 82 ------~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~ 155 (609)
...|+.+.+.++..+.++.++.+++..++.++.|.+.+|+.+++.+++++|+..+++||||||+.+.+..+++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~ 151 (315)
T 1jwy_B 72 ADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPT 151 (315)
T ss_dssp CTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------
T ss_pred cccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCch
Confidence 36788899999999999999999999999888888889999999999999999999999999998766666777
Q ss_pred chHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCc
Q 007296 156 SIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP 235 (609)
Q Consensus 156 ~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g 235 (609)
.+.+.+..++..|++.+|++|+++++++.++..++...+++.+++.+.|+++|+||+|+.+......+.+.+....++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 231 (315)
T 1jwy_B 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLG 231 (315)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCC
Confidence 78888999999999999999999888777777666667889999999999999999999977655667776555566689
Q ss_pred eeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 007296 236 WIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKTISELEAE 315 (609)
Q Consensus 236 ~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~l~~~~~e 315 (609)
|+.+++.|+.+++.+....+....+..||..+++|..+..+.|+..|.+.+++.+..++++++|++..+++..+.+++++
T Consensus 232 ~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~~ 311 (315)
T 1jwy_B 232 FIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQGE 311 (315)
T ss_dssp EEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred eEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999887888888888888999888888887788999999999999999999999999999999999999999
Q ss_pred HHHc
Q 007296 316 LTRL 319 (609)
Q Consensus 316 L~~l 319 (609)
|.+|
T Consensus 312 l~~~ 315 (315)
T 1jwy_B 312 LSTY 315 (315)
T ss_dssp ----
T ss_pred HHhC
Confidence 9765
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=8.3e-39 Score=329.29 Aligned_cols=298 Identities=57% Similarity=0.912 Sum_probs=261.1
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecC
Q 007296 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQ 80 (609)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~ 80 (609)
|++|++++++|||.+..+|... ..++|+|+|||.+|||||||+|+|+|.+++|++.++||++|+++++.+..
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~ 72 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNA--------DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNST 72 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCT--------TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHhcCCCC--------CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCC
Confidence 9999999999999999988631 24799999999999999999999999999999999999999999998775
Q ss_pred CCccchhhccCCCCccCChHHHHHHHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHH
Q 007296 81 EGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQD 160 (609)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~ 160 (609)
.+|+++.+..+..+++++.+...++..+.++.|.+.+++.+.+.+++++|+..+++||||||+......++++++...
T Consensus 73 --~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~ 150 (299)
T 2aka_B 73 --TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ 150 (299)
T ss_dssp --SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHH
T ss_pred --cccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHH
Confidence 467888888888899999999999888888888888999999999999998899999999999987666677777788
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEe
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVV 240 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~ 240 (609)
+..++..|++.++++||+|++++.++..+++..+++.+++.+.|+++|+||+|+.+++....+.+++....++.||..+.
T Consensus 151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 230 (299)
T 2aka_B 151 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 230 (299)
T ss_dssp HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEE
Confidence 89999999999999998888988888888877799999999999999999999998765556677655556667888888
Q ss_pred eCChhhhcccccHHHHHHHHHHHhccCCCCCccccccChHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 007296 241 NRSQADINKSVDMIAARRREHEYFKNSPEYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSLISKT 308 (609)
Q Consensus 241 ~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~i~~~ 308 (609)
+.|+.......+.......|.+||+.++.|.....++|+..|.+.|++.+..|+++++|++..+++.+
T Consensus 231 ~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 231 NRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 88876554555566666779999999889999989999999999999999999999999999998875
No 7
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.7e-40 Score=325.71 Aligned_cols=251 Identities=10% Similarity=0.154 Sum_probs=191.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCC---CCchhHhHHhhhhHHhhcccCccccCC----hhHHHHHHHhhcCCCCCC
Q 007296 327 AGGKLYTAMEISRAFDQIFKEHLDGVRP---GGDKIYGVFDNQLPAGLKRLQFDKHLS----MDNVRKLITEADGYQPHL 399 (609)
Q Consensus 327 ~~~~~~~l~~~~~~f~~~~~~~~~g~~~---~~~~i~~~f~~~~~~~~~~~~~~~~~~----~~~i~~~i~~~~g~~p~~ 399 (609)
+.+++.||++.++.|++.+.+++.|... |+.|++..++..|.+|...++-..... .++|....+++.|+++|.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 4567889999999999999999999863 567999999999998887654321111 246666778899999999
Q ss_pred CCchHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007296 400 IAPEQGYRRLIESCLVTIRGPAEAAVDAIHGILKELVQKSISETVELKQYPTLRVEVGNAAIQSLERMRDESRRATLQLV 479 (609)
Q Consensus 400 ~~pe~af~~li~~~i~~l~~Pa~~cv~~V~~~l~~~v~~~~~~~~~~~rfp~L~~~i~~~~~~~l~~~~~~a~~~i~~li 479 (609)
|+|+.+|+.||++||++|++||++|++.|++++.+++.++.. .+|+|||+|++++.+++.+++.+|..+|+++|+++|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988775 699999999999999999999999999999999999
Q ss_pred HHhcCccchh-hhccCchhh----hhCC--CCCCC---CCCCCcH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 007296 480 DMECCYLTVE-FFRKLPQDA----EKGG--NPTHS---IFDRYSD-TYLRRIGSTVLSYVNMVCASLRHSIPKSVVYCQV 548 (609)
Q Consensus 480 ~~E~~y~~td-~~~~~~~~~----~~~~--~~~~~---~~~~~~~-~~~~~i~~~v~aYf~iv~k~i~D~VPk~I~~~lv 548 (609)
+||+.+||+| .|....+.+ .+.. .+..+ ....... +.+++|+.+|.|||+||++|++|+|||+|+||||
T Consensus 161 ~mE~~vytqD~~Y~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~l~sYf~i~~~rl~d~IP~~I~~~ll 240 (271)
T 3ljb_A 161 QMEQIVYCQDQVYRGALQKVREKELEEEKKKKSWDFGAFQSSSATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFML 240 (271)
T ss_dssp HHHTSCC----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccCCHHHHHHHHHHHHHHhcccccccccccccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999888886 343221111 0000 00000 0011123 5678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCCCHHH
Q 007296 549 REAKRSLLDYFFAELGKKEIKQLSSLLDEDPAV 581 (609)
Q Consensus 549 ~~~~~~lq~~l~~~L~~~~~~~~~~ll~E~~~i 581 (609)
+.+++.||++|++.||+++. +++||+|||++
T Consensus 241 ~~~~~~lQ~~ml~~l~~~~~--~~~LL~E~~d~ 271 (271)
T 3ljb_A 241 QTYGQQLQKAMLQLLQDKDT--YSWLLKERSDT 271 (271)
T ss_dssp HHHHHHHHHHHHHTTSCGGG--HHHHTCCC---
T ss_pred HHHHHHHHHHHHHHHhchhh--HHHHhcCCCCC
Confidence 99999999999999999875 99999999985
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=5.7e-18 Score=192.74 Aligned_cols=172 Identities=19% Similarity=0.257 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHH---HH
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEIS---DE 109 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~---~~ 109 (609)
+-++|+|+|.+|+|||||+|+|+|.+++|++..+||++|+.+.+.. .......+.++......++..+...+. +.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~--~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGP--EKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECS--SCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCC--CCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4679999999999999999999999999999999999999987532 111111111111111112222221110 01
Q ss_pred hhhhcCCCCcccCCceEEEEecCCC---CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc
Q 007296 110 TDRETGRSKAISTVPIHLSIFSPNV---VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL 186 (609)
Q Consensus 110 ~~~~~g~~~~~s~~~i~l~i~~~~~---~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~ 186 (609)
.....+.+.........++++.|.. .+++||||||+..... ...++..|++++|++|+|+ +++...
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~Vv-da~~~~ 214 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILFVM-RASQPC 214 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEEEE-ETTSTT
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEEEE-eCCCcc
Confidence 1111222233444566677777653 4899999999876422 2567889999999987765 555555
Q ss_pred cchHHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 187 ATSDAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 187 ~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
..++...+.+.+...+.|+++|+||+|+.+.
T Consensus 215 s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 215 TLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp CHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred chhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 5555433445666678899999999999754
No 9
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.74 E-value=1.4e-18 Score=179.25 Aligned_cols=213 Identities=15% Similarity=0.247 Sum_probs=133.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..+.|+++|.+|||||||+|+|+|.++ .+++..|.+++
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~-----~i~s~~~~tT~------------------------------------- 46 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKV-----SIISPKAGTTR------------------------------------- 46 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSCCCC-------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc-----cccCCCCCcee-------------------------------------
Confidence 577999999999999999999999987 33333331111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.+......+...+++||||||+.+... ...+.+.+...+..|++.+|+++++++. +......+..
T Consensus 47 ----------~~~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~-~~~~~~~~~~ 112 (308)
T 3iev_A 47 ----------MRVLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDA-TEGWRPRDEE 112 (308)
T ss_dssp ----------SCEEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEET-TTBSCHHHHH
T ss_pred ----------eEEEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeC-CCCCCchhHH
Confidence 1111111222245789999999987431 2346677788889999999999887654 4333333322
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcccccc--CCceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKL--RYPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEY 270 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l--~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~ 270 (609)
.+...+...+.|+++|+||+|+.+......+.+......+ ...++.+++.++.++++++..+.....+...++.....
T Consensus 113 ~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~ 192 (308)
T 3iev_A 113 IYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMI 192 (308)
T ss_dssp HHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCC
T ss_pred HHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccc
Confidence 1255555567899999999999843333333322111122 24577777777788887777666655444433333223
Q ss_pred CccccccChHHHHHHHHHHHHHHHHhhcHHHHHH
Q 007296 271 GHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSL 304 (609)
Q Consensus 271 ~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~ 304 (609)
.+.+.+ ....+.+++.+..++++++|+-...
T Consensus 193 td~~~~---~~~~e~irek~~~~~~~eiP~~~~v 223 (308)
T 3iev_A 193 TDLPLR---LLAAEIVREKAMMLTREEVPTSIAV 223 (308)
T ss_dssp BCCCHH---HHHHHHHHHHHHHTCCTTHHHHCEE
T ss_pred cCCCHH---HHHHHHHHHHHHhhhhhhcCCeeEE
Confidence 222222 2345778888888888899976543
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.73 E-value=3.1e-18 Score=176.01 Aligned_cols=207 Identities=15% Similarity=0.183 Sum_probs=127.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..+.|+|||.+|||||||+|+|+|.++ .+++..|.+++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~-----~ivs~~~~tTr------------------------------------- 43 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKV-----APISPRPQTTR------------------------------------- 43 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSCCCC-------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCce-----eeecCCCCcee-------------------------------------
Confidence 467899999999999999999999987 33444442111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.+. .+...+...+.||||||+.+.. ..+.+.+...+..|++.+|+++++++.. ......+ .
T Consensus 44 ----------~~i~-~i~~~~~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~VvD~~-~~~~~~~-~ 105 (301)
T 1wf3_A 44 ----------KRLR-GILTEGRRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWVVDLR-HPPTPED-E 105 (301)
T ss_dssp ----------SCEE-EEEEETTEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEEEETT-SCCCHHH-H
T ss_pred ----------EEEE-EEEEeCCcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEEEECC-CCCChHH-H
Confidence 0010 0222234578999999998632 2356667788899999999998876543 3333332 2
Q ss_pred HHHHHhCCC--CCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCC
Q 007296 193 KISREVDPR--GDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEY 270 (609)
Q Consensus 193 ~l~~~~d~~--~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~ 270 (609)
.+.+.+... +.|+++|+||+|+.+......+.++.. .....++.+++.++.+++++++.+.....+.++++....+
T Consensus 106 ~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~ 183 (301)
T 1wf3_A 106 LVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYA 183 (301)
T ss_dssp HHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCC
T ss_pred HHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccc
Confidence 233334333 689999999999975432123333221 0012345555555677777766665544444444433333
Q ss_pred -CccccccChHHHHHHHHHHHHHHHHhhcHHHHHH
Q 007296 271 -GHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQSL 304 (609)
Q Consensus 271 -~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~~~ 304 (609)
++.++++ ...+.+++.+.+.+++++|+....
T Consensus 184 ~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~~v 215 (301)
T 1wf3_A 184 KSDQTFGE---WVAEILREEAMKRLWHEVPYAVAT 215 (301)
T ss_dssp SBSSCHHH---HHHHHHHHHHHHTCCTTHHHHCEE
T ss_pred cCCCCHHH---HHHHHHHHHHHHHhhcccCceEEE
Confidence 3333332 345777888888888999976643
No 11
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.62 E-value=3.9e-17 Score=167.90 Aligned_cols=204 Identities=15% Similarity=0.239 Sum_probs=116.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..+.|+|||.+|||||||+|+|+|..+. +++..|.+++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-----i~s~~~~tTr------------------------------------- 44 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-----ITSRKAQTTR------------------------------------- 44 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-----ECCCCSSCCS-------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-----ccCCCCCcce-------------------------------------
Confidence 4678999999999999999999998762 2232221100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCc-cccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLT-KVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+.+ ..+...+...++|+||||+. ... ..+.+.+...+..+++.+|++++++.. .. +...+.
T Consensus 45 ----------~~~-~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~vl~Vvd~-~~-~~~~~~ 106 (301)
T 1ega_A 45 ----------HRI-VGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVELVIFVVEG-TR-WTPDDE 106 (301)
T ss_dssp ----------SCE-EEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEEEEEEEET-TC-CCHHHH
T ss_pred ----------eeE-EEEEEECCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCEEEEEEeC-CC-CCHHHH
Confidence 000 01222234578999999987 321 012222333356678889988876654 33 444432
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCce---eeEeeCChhhhcccccHHHHHHHHHHHhccCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPW---IGVVNRSQADINKSVDMIAARRREHEYFKNSP 268 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~---~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~ 268 (609)
.+++.+...+.|.|+|+||+|+........+.+.. +.-.+|+ +.+++..+.+++++.+.......+.++++...
T Consensus 107 -~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~--l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~ 183 (301)
T 1ega_A 107 -MVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQF--LASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPED 183 (301)
T ss_dssp -HHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHH--HHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTT
T ss_pred -HHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHH--HHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCcc
Confidence 35666666679999999999998622223333321 1112344 44444445666665555544433444433333
Q ss_pred CCCccccccChHHHHHHHHHHHHHHHHhhcHHHH
Q 007296 269 EYGHLTDRMGSEYLGKVLSKHLETVIKSRIPGLQ 302 (609)
Q Consensus 269 ~~~~~~~~~g~~~L~~~L~~~L~~~i~~~LP~l~ 302 (609)
...+.+.++ ...+.+++.+.+.+.+++|+-.
T Consensus 184 ~~~d~~~~~---~~~e~~re~l~~~l~~e~p~~~ 214 (301)
T 1ega_A 184 YITDRSQRF---MASEIIREKLMRFLGAELPYSV 214 (301)
T ss_dssp CCSCCSHHH---HHHHHHHHHHHHHHGGGCCTTE
T ss_pred ccCCCCHHH---HHHHHHHHHHHHHhCCCCCeEE
Confidence 333333322 2446677777777777777553
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.57 E-value=2.4e-15 Score=150.79 Aligned_cols=157 Identities=14% Similarity=0.231 Sum_probs=99.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|+|+++|.+|||||||+|+|+|..+ ..+ ..|+
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~-~v~-----~~pg----------------------------------------- 33 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQ-RVG-----NWPG----------------------------------------- 33 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSE-EEE-----ECTT-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-Ccc-----CCCC-----------------------------------------
Confidence 48999999999999999999999874 222 1220
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh--cCCceEEEEEecCCCcccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
++.+...-.+.. +...+.||||||+......++..... +.+...|+ .++|++|++++..+ ....
T Consensus 34 ------~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~vi~VvDas~----~~~~ 99 (256)
T 3iby_A 34 ------VTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCIINVIDACH----LERH 99 (256)
T ss_dssp ------SSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEEEEEEEGGG----HHHH
T ss_pred ------ceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEEEEEeeCCC----chhH
Confidence 000000111111 12378999999998754321111222 45677888 89999988776544 2344
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+.+...+...+.|+++|+||+|+.+... +...+ ...++.+++.+++.++.|+++++..+.
T Consensus 100 ~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~vi~~SA~~g~gi~el~~~i~ 162 (256)
T 3iby_A 100 LYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKL----ESLLGCSVIPIQAHKNIGIPALQQSLL 162 (256)
T ss_dssp HHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHH----HHHHCSCEEECBGGGTBSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHH----HHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 5577777888999999999999975432 22222 123456778888887788877665554
No 13
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.54 E-value=1.7e-14 Score=140.78 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=102.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|+|+|+|.+|||||||+|+|+|..++. .++..|
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~----~~~~~~----------------------------------------- 62 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLA----FASKTP----------------------------------------- 62 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSS----CTTCCC-----------------------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcce----eecCCC-----------------------------------------
Confidence 68999999999999999999999987321 111111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcC---CceEEEEEecCCCcccch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEK---PNCIILAISPANQDLATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~---~~~iIL~v~~a~~d~~~~ 189 (609)
| .+.......+...+...++||||||+..... +....+.+..++..|++. +|.+|+++ ++.......
T Consensus 63 --~----~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~-d~~~~~~~~ 132 (223)
T 4dhe_A 63 --G----RTQHINYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMM-DARRPLTEL 132 (223)
T ss_dssp --C----SCCCEEEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCCCHH
T ss_pred --C----cccceEEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEE-eCCCCCCHH
Confidence 0 0111111223223446899999999875432 334456677888888887 55576655 444443333
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhcccc-------ccCCceeeEeeCChhhhcccccHHHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSY-------KLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~-------~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+ ..+.+.+...+.|+++|+||+|+.+.... ..+.+..... .....++.+++.++.++++++..+...
T Consensus 133 ~-~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 133 D-RRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp H-HHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 2 33555555567899999999999864321 1111111111 123456777777777777666655443
No 14
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.54 E-value=2.7e-14 Score=131.68 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=94.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|++|||||||+|++++..+.+.. ...+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~------------------------------------------ 40 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKY-DPTIEDFY------------------------------------------ 40 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccC-CCCcceeE------------------------------------------
Confidence 47999999999999999999987752211 11111000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l 192 (609)
...+.+ ......+.||||||.... ..+...|++.+++++++++..+... ....++
T Consensus 41 ---------~~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 97 (167)
T 1kao_A 41 ---------RKEIEV-DSSPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR 97 (167)
T ss_dssp ---------EEEEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHH
T ss_pred ---------EEEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHH
Confidence 000111 111235889999996543 5567788999999988775543211 011222
Q ss_pred H-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 193 K-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 193 ~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
. +.+.....+.|+++|+||+|+.+......+.........+.+|+.+++.++.++++++..+...
T Consensus 98 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 163 (167)
T 1kao_A 98 DQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163 (167)
T ss_dssp HHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHH
Confidence 2 3344455678999999999997543211111111112234578888888888887776655443
No 15
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.52 E-value=9.7e-15 Score=157.98 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=109.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|.|++||.+|||||||+|+|+|..+ .++...|.+++
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g~T~-------------------------------------- 37 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEGVTR-------------------------------------- 37 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCCCcc--------------------------------------
Confidence 58999999999999999999999875 33444443332
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
+.+.-.+.. +...+.+|||||+..... ..+.+.+...+..|++.+|++|++++ +.......+ ..
T Consensus 38 ---------d~~~~~~~~-~~~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V~D-~~~~~~~~d-~~ 101 (439)
T 1mky_A 38 ---------DPVQDTVEW-YGKTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFVVD-GKRGITKED-ES 101 (439)
T ss_dssp ---------CCSEEEEEE-TTEEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEEEE-TTTCCCHHH-HH
T ss_pred ---------ceeeEEEEE-CCeEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEEEE-CCCCCCHHH-HH
Confidence 111111111 223688999999875321 22455678888999999999988764 444443333 12
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccHHHHHHHHHHHh-ccC-CCC
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAARRREHEYF-KNS-PEY 270 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff-~~~-~~~ 270 (609)
++..+...+.|+++|+||+|+.+.. ..+... ....++. .++.+++.++.+++++++.+.....+...- ... ..-
T Consensus 102 i~~~l~~~~~p~ilv~NK~D~~~~~--~~~~~~-~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~ 178 (439)
T 1mky_A 102 LADFLRKSTVDTILVANKAENLREF--EREVKP-ELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEIT 178 (439)
T ss_dssp HHHHHHHHTCCEEEEEESCCSHHHH--HHHTHH-HHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCC
T ss_pred HHHHHHHcCCCEEEEEeCCCCcccc--HHHHHH-HHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccc
Confidence 3443433578999999999986321 011101 1123444 467788888888888777666555443210 000 000
Q ss_pred C--cc----ccccChHHHHHHHHH
Q 007296 271 G--HL----TDRMGSEYLGKVLSK 288 (609)
Q Consensus 271 ~--~~----~~~~g~~~L~~~L~~ 288 (609)
. .+ .+..|...|.+.|..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHhC
Confidence 0 11 146788877776654
No 16
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.52 E-value=2.2e-14 Score=143.96 Aligned_cols=168 Identities=18% Similarity=0.178 Sum_probs=99.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccc--cccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGI--VTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
..++|+|+|.+|||||||+|+|+|...++.+... +|+.....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~------------------------------------ 64 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKS------------------------------------ 64 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEE------------------------------------
Confidence 5679999999999999999999998854544332 23222111
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
....+...+.||||||+...... .....+.+...+..+++.+|++|+|+.... +...+
T Consensus 65 ------------------~~~~~~~~i~iiDTpG~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~ 122 (260)
T 2xtp_A 65 ------------------QGSWGNREIVIIDTPDMFSWKDH--CEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQD 122 (260)
T ss_dssp ------------------EEEETTEEEEEEECCGGGGSSCC--CHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHHH
T ss_pred ------------------EEEeCCCEEEEEECcCCCCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHHH
Confidence 11112346899999998875432 222333445566678899999988776543 33222
Q ss_pred --HHHHHHHhCCC--CCceEEEec-ccCcCCCCCcHHH------------HHhccccccCCc-e--eeEeeCChhhhccc
Q 007296 191 --AIKISREVDPR--GDRTFGVLT-KIDLMDKGTDAVD------------ILEGKSYKLRYP-W--IGVVNRSQADINKS 250 (609)
Q Consensus 191 --~l~l~~~~d~~--~~rti~Vlt-K~D~~~~~~~~~~------------~l~~~~~~l~~g-~--~~v~~~s~~~i~~~ 250 (609)
....+..+... +.+.|+|+| |+|+.+. ...+ ++.. ....++ | +.+++..+.+++++
T Consensus 123 ~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~SA~~~~gv~~l 198 (260)
T 2xtp_A 123 QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--SLMDYMHDSDNKALSKLVAA--CGGRICAFNNRAEGSNQDDQVKEL 198 (260)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHH--TTTCEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhhccEEEEEEcccccCCc--cHHHHHHhcchHHHHHHHHH--hCCeEEEecCcccccccHHHHHHH
Confidence 22334433221 467888888 9999843 2322 2211 111111 3 34444455678887
Q ss_pred ccHHHHHHHHHH
Q 007296 251 VDMIAARRREHE 262 (609)
Q Consensus 251 ~~~~~~~~~E~~ 262 (609)
+..+.....+..
T Consensus 199 ~~~i~~~~~~~~ 210 (260)
T 2xtp_A 199 MDCIEDLLMEKN 210 (260)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 777776666544
No 17
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.51 E-value=4.7e-14 Score=138.61 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=79.3
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHH
Q 007296 25 SALPTLWDSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRK 104 (609)
Q Consensus 25 ~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (609)
..+|......++|+|+|.+|||||||+|+|+|..+.+.....+|+..
T Consensus 20 ~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~--------------------------------- 66 (228)
T 2qu8_A 20 QGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL--------------------------------- 66 (228)
T ss_dssp --CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CE---------------------------------
T ss_pred ccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceee---------------------------------
Confidence 45666556788999999999999999999999876211111111111
Q ss_pred HHHHHhhhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC
Q 007296 105 EISDETDRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ 184 (609)
Q Consensus 105 ~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~ 184 (609)
.+.....+...+.||||||....+... ... .....+..|...+|++|+|++..+.
T Consensus 67 ---------------------~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~~--~~~~~~~~~~~~~d~~i~v~d~~~~ 121 (228)
T 2qu8_A 67 ---------------------YVGHFDHKLNKYQIIDTPGLLDRAFEN--RNT--IEMTTITALAHINGVILFIIDISEQ 121 (228)
T ss_dssp ---------------------EEEEEEETTEEEEEEECTTTTTSCGGG--CCH--HHHHHHHHHHTSSEEEEEEEETTCT
T ss_pred ---------------------eeeeeecCCCeEEEEECCCCcCcccch--hhh--HHHHHHHHhhccccEEEEEEecccc
Confidence 011111123478999999986532210 000 0012234567788988887654432
Q ss_pred c-ccchHHHHHHHHhCCC--CCceEEEecccCcCCCC
Q 007296 185 D-LATSDAIKISREVDPR--GDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 185 d-~~~~~~l~l~~~~d~~--~~rti~VltK~D~~~~~ 218 (609)
. +....+..+...+... +.|+++|+||+|+.+..
T Consensus 122 ~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 122 CGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp TSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred cCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 1 2223344555555543 78999999999998653
No 18
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=134.85 Aligned_cols=161 Identities=15% Similarity=0.180 Sum_probs=100.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+.+......|.-.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 53 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 53 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE-----------------------------------------
Confidence 467999999999999999999999876222111111100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~ 190 (609)
....+.+ ......+.||||||.... ..+...|++.+|++|+|++..+.. .....
T Consensus 54 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 109 (196)
T 3tkl_A 54 ----------KIRTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109 (196)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHH
Confidence 0001111 111236889999996543 335678999999998877654421 11233
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
++..+......+.|+++|+||+|+.+................+..|+.+++.++.++++.+..+....
T Consensus 110 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 110 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 55556666666889999999999976543211111111223446788888888888877766555443
No 19
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.51 E-value=2.5e-14 Score=132.32 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=78.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+|+|++|||||||+|+++|..+-+......+.+..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR----------------------------------------- 40 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-----------------------------------------
Confidence 568999999999999999999987652222111111100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc--chHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~--~~~~ 191 (609)
.+.+ ......+.+|||||.... ..+...|++.+++++++++..+...- ...+
T Consensus 41 ------------~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 94 (166)
T 3q72_A 41 ------------SIVV-DGEEASLMVYDIWEQDGG-------------RWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 94 (166)
T ss_dssp ------------EEEE-TTEEEEEEEEECC----------------------------CCEEEEEEETTCHHHHHHHHHH
T ss_pred ------------EEEE-CCEEEEEEEEECCCCccc-------------hhhhhhhhhhCCEEEEEEECCCHHHHHHHHHH
Confidence 0011 112236789999996653 45667889999999887755432210 1122
Q ss_pred HHHH-HHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 192 IKIS-REVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 192 l~l~-~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+... +.....+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 95 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 95 RVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQ 161 (166)
T ss_dssp HHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Confidence 2222 22234578999999999998654321221111122234567777777777777666555443
No 20
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.50 E-value=6.9e-14 Score=133.20 Aligned_cols=163 Identities=20% Similarity=0.293 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|.+|||||||+|+|+|..+.+... ..|
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTS----SKP----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccC----CCC-----------------------------------------
Confidence 67999999999999999999999987522111 001
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCC---ceEEEEEecCCCcccch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKP---NCIILAISPANQDLATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~---~~iIL~v~~a~~d~~~~ 189 (609)
| .+.......+ ...+.+|||||+.... .+.+..+....+...|++.+ ++++++++ ++......
T Consensus 57 --~----~t~~~~~~~~----~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d-~~~~~~~~ 122 (195)
T 1svi_A 57 --G----KTQTLNFYII----NDELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELKAVVQIVD-LRHAPSND 122 (195)
T ss_dssp ---------CCEEEEEE----TTTEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCCCHH
T ss_pred --C----ceeeEEEEEE----CCcEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEE-CCCCCCHH
Confidence 0 0001111111 1379999999976532 23344566778888888877 78877654 44333333
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhc-cccccCCceeeEeeCChhhhcccccHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEG-KSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~-~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+ ..+.+.+...+.|+++|+||+|+.+...- ..+.+.. ........|+.+++.++.++++++..+.
T Consensus 123 ~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 123 D-VQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp H-HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred H-HHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHH
Confidence 2 23444444467899999999999875421 1111111 1112234566666666666666555443
No 21
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.50 E-value=2.7e-14 Score=154.29 Aligned_cols=189 Identities=17% Similarity=0.245 Sum_probs=105.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.|.|++||.+|||||||+|+|+|..+ .++...|.+++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~g~T~-------------------------------------- 39 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPGVTR-------------------------------------- 39 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCCcc--------------------------------------
Confidence 68999999999999999999999875 33444443222
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
+.....+. .+...+.+|||||+... ..++.+.+...+..|++.+|++|++++ +.......+ ..
T Consensus 40 ---------d~~~~~~~-~~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vvD-~~~~~~~~d-~~ 102 (436)
T 2hjg_A 40 ---------DRIYSSAE-WLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVN-GREGVTAAD-EE 102 (436)
T ss_dssp ----------CEEEECT-TCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEEE-TTTCSCHHH-HH
T ss_pred ---------ceEEEEEE-ECCceEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEe-CCCCCCHHH-HH
Confidence 11111111 22357999999998742 122667788889999999999988765 444444333 34
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCc
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGH 272 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~ 272 (609)
+++.+...+.|+++|+||+|+.+...... ..+.+++ .++.+++..+.++.++++.+.....+.+--...+.-..
T Consensus 103 ~~~~l~~~~~pvilv~NK~D~~~~~~~~~-----~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~k 177 (436)
T 2hjg_A 103 VAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQ 177 (436)
T ss_dssp HHHHHTTCCSCEEEEEECCCC-----CCC-----SSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEE
T ss_pred HHHHHHHcCCCEEEEEECccCccchhhHH-----HHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcE
Confidence 66767777899999999999975432211 1223343 45667777777887776655443322110000000001
Q ss_pred c----ccccChHHHHHHHH
Q 007296 273 L----TDRMGSEYLGKVLS 287 (609)
Q Consensus 273 ~----~~~~g~~~L~~~L~ 287 (609)
+ ....|...|..+|.
T Consensus 178 i~lvG~~nvGKSSLin~l~ 196 (436)
T 2hjg_A 178 FCLIGRPNVGKSSLVNAML 196 (436)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 1 14678888776664
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=4.1e-14 Score=132.75 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=90.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|++++..+.+.....++......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~-------------------------------------- 50 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRN-------------------------------------- 50 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEE--------------------------------------
Confidence 457999999999999999999999876332221111111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
..+.+ ......+.+|||||.... ..+...|++++|++|+|++..+... ....
T Consensus 51 ------------~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 104 (180)
T 2g6b_A 51 ------------KVLDV-DGVKVKLQMWDTAGQERF-------------RSVTHAYYRDAHALLLLYDVTNKASFDNIQA 104 (180)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHccCCCEEEEEEECCCHHHHHHHHH
Confidence 00111 111236889999996542 4567788999999988775543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++..+....+.+.|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+.
T Consensus 105 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 169 (180)
T 2g6b_A 105 WLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169 (180)
T ss_dssp HHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 44555555557789999999999986432111111111112234566666666666666555443
No 23
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.49 E-value=5.2e-14 Score=134.30 Aligned_cols=158 Identities=12% Similarity=0.169 Sum_probs=91.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+.+......+
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-------------------------------------------- 60 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG-------------------------------------------- 60 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTT--------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccc--------------------------------------------
Confidence 456899999999999999999999875211111100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~ 190 (609)
.......+.+ ......+.||||||..+. ..+...|++.+|++|+|++..+.. + ....
T Consensus 61 -------~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~ 119 (192)
T 2il1_A 61 -------VDFKIKTVEL-RGKKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLPK 119 (192)
T ss_dssp -------EEEEEEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -------eeEEEEEEEE-CCeEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 0000011111 111246889999996542 566788999999998877554321 1 1133
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccc-cCCceeeEeeCChhhhcccccHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYK-LRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++..++...+.+.++++|+||+|+.+......+........ ....|+.+++.++.++++++..+.
T Consensus 120 ~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 120 WMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 44566666677899999999999975432111111111111 134566677766666666555443
No 24
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=5.8e-14 Score=152.73 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=98.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-++|++||.+|||||||+|+|+|.++ .+++..|.+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~-----a~vs~~~gT---------------------------------------- 277 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDR-----AIVTDIPGT---------------------------------------- 277 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTB-----CCCCCSSCC----------------------------------------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCC-----CccCCCCCe----------------------------------------
Confidence 36899999999999999999999875 234444411
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCc-cccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLT-KVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~-~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+..+.... +.+ +...++||||||+. ...... ...--.....|++.+|++|+|++..+ ....+ ..
T Consensus 278 ---T~d~~~~~--i~~---~g~~~~l~DTaG~~~~~~~~v-----e~~gi~~~~~~~~~aD~vl~VvD~s~-~~s~~-~~ 342 (482)
T 1xzp_A 278 ---TRDVISEE--IVI---RGILFRIVDTAGVRSETNDLV-----ERLGIERTLQEIEKADIVLFVLDASS-PLDEE-DR 342 (482)
T ss_dssp ---SSCSCCEE--EEE---TTEEEEEEESSCCCSSCCTTC-----CCCCHHHHHHHHHHCSEEEEEEETTS-CCCHH-HH
T ss_pred ---eeeeEEEE--Eec---CCeEEEEEECCCccccchhhH-----HHHHHHHHHHHhhcccEEEEEecCCC-CCCHH-HH
Confidence 11111111 112 23468999999987 532211 10002345678999999988776543 22222 23
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
++...+ .+.|+|+|+||+|+.+.. +..++.. . ......++.+++.+++++++++..+....
T Consensus 343 ~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~-~-~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 343 KILERI--KNKRYLVVINKVDVVEKI-NEEEIKN-K-LGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp HHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH-H-HTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred HHHHHh--cCCCEEEEEECccccccc-CHHHHHH-H-hcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 444544 368999999999997542 2222211 0 11224688889888889988887666543
No 25
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.49 E-value=2.6e-14 Score=132.51 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=91.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+|+|++|||||||+|++++..+.+......+.-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 40 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF------------------------------------------ 40 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE------------------------------------------
Confidence 46899999999999999999999876222111111000
Q ss_pred cCCCCcccCCceEEEEecC-CCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 114 TGRSKAISTVPIHLSIFSP-NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~-~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
.... +... ....+.||||||.... ..+...|++++|++|++++..+... ....
T Consensus 41 ---------~~~~--~~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (170)
T 1g16_A 41 ---------KIKT--VDINGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIKQ 96 (170)
T ss_dssp ---------EEEE--EESSSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHH
T ss_pred ---------EEEE--EEECCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 0001 1111 1236889999996543 2235678899999988775543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
++..+......+.|+++|+||+|+.+......+ ........+..|+.+++.++.++++.+..+...
T Consensus 97 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 97 WFKTVNEHANDEAQLLLVGNKSDMETRVVTADQ-GEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 162 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHH-HHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECccCCcCccCHHH-HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 444555555567899999999999543322111 111111223467777777777776665554443
No 26
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.49 E-value=5.8e-14 Score=132.58 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|++++..+.+......+.-. .
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~------------------------------------- 48 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEF---G------------------------------------- 48 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEE---E-------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE---E-------------------------------------
Confidence 467999999999999999999998876222111111000 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
...+.+ ......+.||||||.... ..+...|++++|++|++++..+... ....
T Consensus 49 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 103 (186)
T 2bme_A 49 -----------SKIINV-GGKYVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNALTN 103 (186)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 000111 111236889999996542 5678889999999988775543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC-cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT-DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
++..+......+.|+++|+||+|+.+... ...+.. ......+..|+.+++.++.++++.+..+....
T Consensus 104 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 104 WLTDARMLASQNIVIILCGNKKDLDADREVTFLEAS-RFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHH-HHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 44444555566789999999999975332 111111 11122335677777777777776665554433
No 27
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.49 E-value=7.9e-14 Score=139.04 Aligned_cols=169 Identities=17% Similarity=0.164 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccc--cccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGI--VTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
.-.+|++||.+|||||||+|+|+|..++..+... +|+.+....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~----------------------------------- 64 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGS----------------------------------- 64 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEE-----------------------------------
Confidence 4568999999999999999999999875544332 444332111
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch-
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS- 189 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~- 189 (609)
+ ..+...++||||||+....... .+.....+......+.+.+|++|+|+.... +...
T Consensus 65 ------------------~-~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~~ 122 (247)
T 3lxw_A 65 ------------------R-RWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGR--FTAQD 122 (247)
T ss_dssp ------------------E-EETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEETTB--CCHHH
T ss_pred ------------------E-EECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeCCC--CCHHH
Confidence 1 1123468999999997532210 011222222222333489999988765443 3322
Q ss_pred -HHHHHHHHh-CC--CCCceEEEecccCcCCCCCcHHHHHhc--------cccccCCceeeEeeCC-----hhhhccccc
Q 007296 190 -DAIKISREV-DP--RGDRTFGVLTKIDLMDKGTDAVDILEG--------KSYKLRYPWIGVVNRS-----QADINKSVD 252 (609)
Q Consensus 190 -~~l~l~~~~-d~--~~~rti~VltK~D~~~~~~~~~~~l~~--------~~~~l~~g~~~v~~~s-----~~~i~~~~~ 252 (609)
.+++.+.+. .+ .+.++|+|.||.|+.+. +..+++.. .....+..|+.+.+.. ..++.+++.
T Consensus 123 ~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~ 200 (247)
T 3lxw_A 123 QQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG--SLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLG 200 (247)
T ss_dssp HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhhccEEEEEEchHhcCCC--CHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHH
Confidence 233444443 22 15789999999999653 23333221 1112233355444443 256666666
Q ss_pred HHHHHHHH
Q 007296 253 MIAARRRE 260 (609)
Q Consensus 253 ~~~~~~~E 260 (609)
.+.....+
T Consensus 201 ~i~~~~~~ 208 (247)
T 3lxw_A 201 MVEGLVLE 208 (247)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 28
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.49 E-value=7.2e-14 Score=130.29 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||+|+|+|..+.+....+.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~------------------------------------------- 39 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED------------------------------------------- 39 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS-------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc-------------------------------------------
Confidence 3579999999999999999999998762211111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~-~~~ 190 (609)
+ ....+.+. .....+.+|||||..... ...+...|++.++++|++++..+... . ...
T Consensus 40 -------~--~~~~~~~~-~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (175)
T 2nzj_A 40 -------V--YERTLTVD-GEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADRGSFESASE 98 (175)
T ss_dssp -------E--EEEEEEET-TEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHH
T ss_pred -------e--eEEEEEEC-CEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCHHHHHHHHH
Confidence 0 00011111 112367899999975421 13456678899999988765443211 1 112
Q ss_pred HHHHHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
++..+... ...+.|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+...
T Consensus 99 ~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 99 LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQ 166 (175)
T ss_dssp HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 22223332 23478999999999997643211111111112233567777777777777766555443
No 29
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.49 E-value=1.5e-14 Score=157.25 Aligned_cols=160 Identities=14% Similarity=0.197 Sum_probs=81.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|+|.+|||||||+|+|+|.++ .+++..|.+++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~gtT~-------------------------------------- 269 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMPGTTR-------------------------------------- 269 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC----------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCCceE--------------------------------------
Confidence 35699999999999999999999865 34555553332
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---H
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS---D 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~---~ 190 (609)
.+... .+.+ +...++||||||+.+.... +....-..+..|++.+|++|+|++..+. .... .
T Consensus 270 -----d~~~~--~i~~---~g~~l~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~~-~s~~~~~~ 333 (476)
T 3gee_A 270 -----DYIEE--CFIH---DKTMFRLTDTAGLREAGEE-----IEHEGIRRSRMKMAEADLILYLLDLGTE-RLDDELTE 333 (476)
T ss_dssp --------CE--EEEE---TTEEEEEEC-------------------------CCCSSCSEEEEEEETTTC-SSGGGHHH
T ss_pred -----EEEEE--EEEE---CCeEEEEEECCCCCcchhH-----HHHHHHHHHHhhcccCCEEEEEEECCCC-cchhhhHH
Confidence 00000 1112 2346899999998653211 1111123356688999999887765443 2221 4
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
...+.+.+. +.|+|+|+||+|+.+......+.+... . ...++.+++.++.++++++..+...
T Consensus 334 ~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~~~l~~~--~-~~~~i~vSAktg~GI~eL~~~i~~~ 395 (476)
T 3gee_A 334 IRELKAAHP--AAKFLTVANKLDRAANADALIRAIADG--T-GTEVIGISALNGDGIDTLKQHMGDL 395 (476)
T ss_dssp HHHHHHHCT--TSEEEEEEECTTSCTTTHHHHHHHHHH--H-TSCEEECBTTTTBSHHHHHHHHTHH
T ss_pred HHHHHHhcC--CCCEEEEEECcCCCCccchhHHHHHhc--C-CCceEEEEECCCCCHHHHHHHHHHH
Confidence 445666665 689999999999986543211112111 0 1457777777778887776655443
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.49 E-value=2.7e-14 Score=132.55 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|++++..+.+......+.-..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 44 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL---------------------------------------- 44 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE----------------------------------------
Confidence 3578999999999999999999988752211111110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
...+.+ ......+.+|||||.... ..+...|++++|++|++++..+.+. ....
T Consensus 45 -----------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z08_A 45 -----------TKKLNI-GGKRVNLAIWDTAGQERF-------------HALGPIYYRDSNGAILVYDITDEDSFQKVKN 99 (170)
T ss_dssp -----------EEEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 000111 111236889999996542 3455678899999988775543221 1122
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..++...+.+.|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+..
T Consensus 100 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1z08_A 100 WVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 165 (170)
T ss_dssp HHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 333344444456899999999999764321111111111223456777777777777766655443
No 31
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.49 E-value=4.7e-14 Score=129.70 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=91.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|+|+|+|++|||||||+|++++..+.+.+ ..|..+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-----~~~~~~--------------------------------------- 36 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVA-----DVPGVT--------------------------------------- 36 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeecc-----CCCCce---------------------------------------
Confidence 489999999999999999999988752111 111000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+.....+.. +...+.+|||||..... +...........+++.++++|++++..+ .....+ ..
T Consensus 37 --------~~~~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~-~~ 99 (161)
T 2dyk_A 37 --------RDLKEGVVET-DRGRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVLFAVDGRA-ELTQAD-YE 99 (161)
T ss_dssp ---------CCEEEEEEE-TTEEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEEEEEESSS-CCCHHH-HH
T ss_pred --------ecceEEEEEe-CCceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEEEEEECCC-cccHhH-HH
Confidence 0011111111 12368899999987532 1334456777889999999988765543 222222 11
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~ 254 (609)
+.+.+...+.|+++|+||+|+.+......++. .++. .|+.+++.++.++++.+..+
T Consensus 100 ~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 100 VAEYLRRKGKPVILVATKVDDPKHELYLGPLY-----GLGFGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp HHHHHHHHTCCEEEEEECCCSGGGGGGCGGGG-----GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEECcccccchHhHHHHH-----hCCCCCeEEEecccCCChHHHHHHH
Confidence 22222224689999999999986532222221 2333 57777777777776655433
No 32
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.49 E-value=3.7e-14 Score=132.68 Aligned_cols=157 Identities=12% Similarity=0.133 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+ +......+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 52 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEF---------------------------------------- 52 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEE----------------------------------------
Confidence 467999999999999999999999875 221111111110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
....+.+ ......+.||||||.... ..+...|++++|++|++++..+... ....
T Consensus 53 ----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 108 (179)
T 1z0f_A 53 ----------GTRIIEV-SGQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLSS 108 (179)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEECTTGGGT-------------CHHHHHHHHTCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEECCCChHh-------------hhhHHHHhccCCEEEEEEeCcCHHHHHHHHH
Confidence 0011111 111236889999995442 4567889999999988775543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
++..+......+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++.+..+
T Consensus 109 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (179)
T 1z0f_A 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA 172 (179)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 4444555555678999999999997543211111111112234567777777777776655443
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.48 E-value=1.4e-13 Score=130.34 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=64.8
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHHHHHHhCC-CCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP-RGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~-~~~rti~VltK 211 (609)
..+.||||||.... ..+...|++++|++|+|++..+.+... ..++..+..... .+.|+++|+||
T Consensus 70 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 70 IHLQLWDTAGLERF-------------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp EEEEEEEECCSGGG-------------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred EEEEEEeCCCcHHH-------------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 36889999997543 567889999999998877554321111 223333333332 57899999999
Q ss_pred cCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 212 IDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+|+.+......+.+.......+..|+.+++.++.++++++..+...
T Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 182 (195)
T 3bc1_A 137 SDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182 (195)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9997643211111111111223456666666666666655544433
No 34
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.48 E-value=6.7e-14 Score=133.28 Aligned_cols=158 Identities=10% Similarity=0.117 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+.+...... .....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~--------------------------------------- 63 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI-GVEFS--------------------------------------- 63 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS-SEEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc-ceeEE---------------------------------------
Confidence 35799999999999999999999987632211110 00000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
...+.+ ......+.||||||..+. ..+...|++.++++|+|++..+... ....
T Consensus 64 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~ 118 (193)
T 2oil_A 64 -----------TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVVER 118 (193)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 001111 112246889999998653 2346788999999988765433211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++++..+.
T Consensus 119 ~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 119 WLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp HHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 33334444455789999999999976432111111111112234567777766666666555443
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.48 E-value=6.4e-14 Score=129.34 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=91.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|++++..+ +.....++.......
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 44 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 44 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEE-------------------------------------
Confidence 356899999999999999999998875 322222221111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+.+ ......+.||||||.... ..+...|++.+|++|++++..+.+. ....
T Consensus 45 --------------~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 45 --------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp --------------EEE-TTEEEEEEEEECCC---C-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCcchh-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 001 111236889999996542 5677889999999988775543211 0112
Q ss_pred HHH-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 191 AIK-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 191 ~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++. +.......+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHH
Confidence 222 33334445789999999999976432111111111112234567777777777766555443
No 36
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=1.3e-13 Score=132.37 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+.+...... .....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---~~~~~------------------------------------- 46 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV---GIDFK------------------------------------- 46 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC---SEEEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc---ceeEE-------------------------------------
Confidence 46799999999999999999999987622211100 00000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
...+.+ ......+.||||||..+. ..+...|++++|++|+|++..+... ....
T Consensus 47 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 101 (203)
T 1zbd_A 47 -----------VKTIYR-NDKRIKLQIWDTAGLERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQD 101 (203)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTGGGCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCeEEEEEEEECCCchhh-------------cchHHHhhcCCCEEEEEEECcCHHHHHHHHH
Confidence 001111 112246889999997543 5677889999999988775543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..+......+.|+++|+||+|+.+......+........++..|+.+++.++.++++++..+..
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (203)
T 1zbd_A 102 WSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD 167 (203)
T ss_dssp HHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444555567899999999999764321111111111122345666666666666655554443
No 37
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.48 E-value=1.2e-13 Score=130.16 Aligned_cols=161 Identities=17% Similarity=0.210 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+ +.....++.......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 58 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 58 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEE-------------------------------------
Confidence 567999999999999999999998875 322222221111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+.+ ......+.||||||.... ..+...|++.++++|++++..+... ....
T Consensus 59 --------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 110 (187)
T 2a9k_A 59 --------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATAD 110 (187)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 001 111236889999996543 5677889999999988775543211 1112
Q ss_pred HHH-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHH
Q 007296 191 AIK-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 191 ~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
++. +.......+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++++..+.....
T Consensus 111 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 111 FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 222 334444457899999999999764321111111111223345677777777777776665554443
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=2.7e-14 Score=136.24 Aligned_cols=159 Identities=14% Similarity=0.138 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|+|++..+ +..... | +
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~-~--~----------------------------------------- 56 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHF-DHNISP-T--I----------------------------------------- 56 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCC-CTTCCC-C--S-----------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCC-CCCcCC-C--c-----------------------------------------
Confidence 467999999999999999999999875 211110 0 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+.+.....+.+ ......+.||||||..+. ..+...|++.++++|+|++..+.+. ....
T Consensus 57 ------~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~ 116 (192)
T 2fg5_A 57 ------GASFMTKTVPC-GNELHKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITKQDSFYTLKK 116 (192)
T ss_dssp ------SEEEEEEEEEC-SSSEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCTHHHHHHHH
T ss_pred ------ceeEEEEEEEe-CCEEEEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCCHHHHHHHHH
Confidence 00000001111 112246889999996543 3446688999999988775543221 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..+....+.+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++++..+..
T Consensus 117 ~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 117 WVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISR 182 (192)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence 444455555667899999999999753321111111111223456777777777777766655443
No 39
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.48 E-value=5.5e-14 Score=130.33 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|++++..+.+..... ... ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~--~~-------------------------------------- 43 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPT-IGA--SF-------------------------------------- 43 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCC-CSE--EE--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc-eeE--EE--------------------------------------
Confidence 3468999999999999999999998762221110 000 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~-~~~ 190 (609)
....+.+ ......+.+|||||..+. ..+...|++.+|++|++++..+... . ...
T Consensus 44 ----------~~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 44 ----------MTKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence 0000111 111246889999997543 3456788999999988765543221 1 123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
++..+........++++|+||+|+.+......+.........+..|+.+++.++.++++++..+
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 4444555555678899999999997643211111111112234566777777666666555433
No 40
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.48 E-value=1.7e-13 Score=130.09 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|+|+|+|++|||||||+|+|+|..+-+.+....+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-------------------------------------------- 57 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGK-------------------------------------------- 57 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCC--------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCC--------------------------------------------
Confidence 678999999999999999999999874222111111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCC---ceEEEEEecCCCcccch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKP---NCIILAISPANQDLATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~---~~iIL~v~~a~~d~~~~ 189 (609)
+...... . ....+.+|||||+..... +.........+...|++.+ +++++++ ++.......
T Consensus 58 --------t~~~~~~-~---~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~-d~~~~~~~~ 121 (195)
T 3pqc_A 58 --------TRSINFY-L---VNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLV-DGRIPPQDS 121 (195)
T ss_dssp --------CCCEEEE-E---ETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCCCHH
T ss_pred --------ccCeEEE-E---ECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEe-cCCCCCCHH
Confidence 0000000 0 123688999999765322 2333455677888888876 6666655 444333332
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhccccc-cCCceeeEeeCChhhhcccccHHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYK-LRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
. ..+.+.+...+.|+++|+||+|+.+.... ..+.+...... ....|+.+++.++.++++++..+..
T Consensus 122 ~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 122 D-LMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp H-HHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred H-HHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHH
Confidence 2 23444444457899999999999865421 11222111111 1245677777777777666655543
No 41
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.48 E-value=2.8e-14 Score=138.80 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=99.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|+|..+ +.... .|.-.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~-~t~~~----------------------------------------- 46 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRF-EKNYN-ATVGA----------------------------------------- 46 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCST-TCEEE-TTTTE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-Cccce-----------------------------------------
Confidence 346999999999999999999998875 21111 11000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~ 190 (609)
....+...........+.||||||..... .+...|+..+|++|+|++..+.. .....
T Consensus 47 --------~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 105 (218)
T 4djt_A 47 --------VNHPVTFLDDQGNVIKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLAR 105 (218)
T ss_dssp --------EEEEEEEEBTTSCEEEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred --------eeEEEEEEeCCCcEEEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHH
Confidence 00000100101111358899999976542 23457889999998876554321 11223
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRRE 260 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 260 (609)
++..+....+.+.++++|+||+|+.+......+............|+.+++.++.++++.+..+.....+
T Consensus 106 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 106 WVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp HHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 4455555556678999999999997653222222222223345678899999999998888777655543
No 42
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.48 E-value=6.2e-14 Score=129.56 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=90.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|++|||||||+|++++..+ +.....++.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 41 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR----------------------------------------- 41 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-----------------------------------------
Confidence 5799999999999999999998765 2222111111100
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~l 192 (609)
..+.+ ......+.+|||||.... ..+...|+++++++|++++..+.. + ....++
T Consensus 42 ----------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 97 (167)
T 1c1y_A 42 ----------KQVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLR 97 (167)
T ss_dssp ----------EEEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 00001 111236889999997653 345678889999998877544321 1 112233
Q ss_pred H-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcccccc-CCceeeEeeCChhhhcccccHHH
Q 007296 193 K-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKL-RYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 193 ~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
. +.+.....+.|+++|+||+|+.+......+......... ...|+.+++.++.++++++..+.
T Consensus 98 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 98 EQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp HHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHH
Confidence 2 333344567899999999999754321111111111122 35677777777777766555443
No 43
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.48 E-value=5.6e-14 Score=139.18 Aligned_cols=130 Identities=17% Similarity=0.216 Sum_probs=77.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccccc--ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG--IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
..++|+|||.+|||||||+|+|+|..+++.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 568999999999999999999999987444322 2333331111
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
+. .+...++||||||+...... ..+..+.+...+..+.+.++++|+++.....+.....
T Consensus 73 ------------------~~-~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~ 131 (239)
T 3lxx_A 73 ------------------SS-WKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHK 131 (239)
T ss_dssp ------------------EE-ETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHH
T ss_pred ------------------EE-eCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHH
Confidence 11 12246889999999865432 3344556667777777889999887654322222222
Q ss_pred HHHHHHH-hC-CCCCceEEEecccCcCCCC
Q 007296 191 AIKISRE-VD-PRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 191 ~l~l~~~-~d-~~~~rti~VltK~D~~~~~ 218 (609)
++..... +. ....++++|+||+|+.+..
T Consensus 132 ~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 132 ATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 3332221 11 1235899999999998654
No 44
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.47 E-value=2.6e-13 Score=142.69 Aligned_cols=176 Identities=23% Similarity=0.295 Sum_probs=99.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.+|.|++||.+|||||||+|+|+|..+...+...+|+-|++-
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~-------------------------------------- 219 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRY-------------------------------------- 219 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEE--------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEE--------------------------------------
Confidence 578899999999999999999999875222222233222111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccc--
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LAT-- 188 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~-- 188 (609)
.+.+ ++ ..+.++||||+... .|.+..+.+... ..++..+|.++++++..+.+ ...
T Consensus 220 -------------~i~~--~g-~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~~~ 278 (364)
T 2qtf_A 220 -------------AIPI--NN-RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLIETL 278 (364)
T ss_dssp -------------EEEE--TT-EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHHHH
T ss_pred -------------EEEE--CC-EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHHHH
Confidence 1112 22 46789999997652 244455555544 45788999998876544322 111
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCCCc-HHHHHhcccccc---CCceeeEeeCChhhhcccccHHHHHHHHHHHh
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKGTD-AVDILEGKSYKL---RYPWIGVVNRSQADINKSVDMIAARRREHEYF 264 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~~l~~~~~~l---~~g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff 264 (609)
..+..+++.+...+.++|+|.||+|+.+.+.. ....+......+ ...++.+++.++.++++++..+.....+...+
T Consensus 279 ~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 279 QSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCCC
Confidence 12345666776667899999999999865411 111110000111 12456677777778877777666655555544
Q ss_pred ccC
Q 007296 265 KNS 267 (609)
Q Consensus 265 ~~~ 267 (609)
..+
T Consensus 359 ~~~ 361 (364)
T 2qtf_A 359 HHH 361 (364)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 45
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.47 E-value=5.9e-14 Score=152.57 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=91.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
+..|.|++||.+|||||||+|+|+|..+ +.+...|.+++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v~~~~g~t~------------------------------------ 59 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTPGVTR------------------------------------ 59 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-----C----------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCCcce------------------------------------
Confidence 4689999999999999999999999876 33333332222
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+.....+. .....+++|||||+... ...+.+.+...+..|++.+|++|++++ +...+...+
T Consensus 60 -----------~~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~VvD-~~~~~~~~d- 120 (456)
T 4dcu_A 60 -----------DRIYSSAE-WLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVN-GREGVTAAD- 120 (456)
T ss_dssp ------------CEEEECT-TCSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEE-SSSCSCHHH-
T ss_pred -----------eEEEEEEE-ECCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEEEe-CCCCCChHH-
Confidence 11222222 23458999999998732 233577788899999999999988765 444444433
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCc-eeeEeeCChhhhcccccHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYP-WIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~ 254 (609)
..+++.+...+.++++|+||+|+.+...... ..+.+++| ++.+++..+.++.++++..
T Consensus 121 ~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~-----e~~~lg~~~~~~iSA~~g~gv~~L~~~i 179 (456)
T 4dcu_A 121 EEVAKILYRTKKPVVLAVNKLDNTEMRANIY-----DFYSLGFGEPYPISGTHGLGLGDLLDAV 179 (456)
T ss_dssp HHHHHHHTTCCSCEEEEEECC---------C-----CSGGGSSSSEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECccchhhhhhHH-----HHHHcCCCceEEeecccccchHHHHHHH
Confidence 3477777778899999999999875432111 12333332 3455555556666555444
No 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=131.81 Aligned_cols=162 Identities=17% Similarity=0.209 Sum_probs=98.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||+|+|++..+ +.....++.......
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 54 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKK------------------------------------- 54 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEE-------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEE-------------------------------------
Confidence 568999999999999999999998875 322222221111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+.+ ......+.||||||.... ..+...|++.++++|++++..+.+. ....
T Consensus 55 --------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 106 (206)
T 2bov_A 55 --------------VVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATAD 106 (206)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 111 111236889999996543 5677889999999988765543211 1122
Q ss_pred HHH-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHH
Q 007296 191 AIK-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRRE 260 (609)
Q Consensus 191 ~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 260 (609)
++. +.......+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++++..+.....+
T Consensus 107 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 107 FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 333 2333344578999999999997643211111111112234567888888888887777666554443
No 47
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.47 E-value=9.3e-14 Score=130.89 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=95.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
....+|+|+|++|||||||+|++++..+ +......+.... ..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------ 57 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSY-LK------------------------------------ 57 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEE-EE------------------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCcccee-EE------------------------------------
Confidence 3566899999999999999999998765 322222211111 00
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cch
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATS 189 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~ 189 (609)
.+ ........+.+|||||.... ..+...|++++|++|++++..+.. + ...
T Consensus 58 --------------~~-~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 58 --------------HT-EIDNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp --------------EE-EETTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EE-EeCCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 01111224678999996553 234567889999998877554321 1 112
Q ss_pred HHHH-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeC-ChhhhcccccHHHHH
Q 007296 190 DAIK-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNR-SQADINKSVDMIAAR 257 (609)
Q Consensus 190 ~~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~-s~~~i~~~~~~~~~~ 257 (609)
.++. +.+.....+.|+++|+||+|+.+......+.........+..|+.+++. ++.++++.+..+...
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 179 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHH
Confidence 2333 3344456678999999999997643321221211122334678888888 777777766555443
No 48
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.47 E-value=3e-14 Score=144.33 Aligned_cols=155 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccc-cccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGI-VTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-++|+++|.+|||||||+|+|+|..+ +.+.-. +|.-+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~----------------------------------------- 40 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVER----------------------------------------- 40 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEE-----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEE-----------------------------------------
Confidence 47899999999999999999999875 322211 11111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh--cCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~v~~a~~d~~~~~ 190 (609)
..-.+.. ....+.||||||+............. +.+.+.|+ +++|++|++++..+. ..
T Consensus 41 ------------~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~~----~~ 100 (274)
T 3i8s_A 41 ------------KEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASNL----ER 100 (274)
T ss_dssp ------------EEEEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGGH----HH
T ss_pred ------------EEEEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCCh----HH
Confidence 1111222 23478899999998765322112232 33456665 689999887765542 22
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
.+.+...+...+.|+++|+||+|+.+... +...+. ..++.+++.+++.++.|+++++..+
T Consensus 101 ~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~----~~lg~~~i~~SA~~g~gi~el~~~i 163 (274)
T 3i8s_A 101 NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALS----ARLGCPVIPLVSTRGRGIEALKLAI 163 (274)
T ss_dssp HHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHH----HHHTSCEEECCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHH----HhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 33344444445799999999999875432 222221 2334667778887778877665544
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=8.8e-14 Score=134.43 Aligned_cols=162 Identities=20% Similarity=0.213 Sum_probs=98.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||+|+|++..+.+.....++.-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 57 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDF----------------------------------------- 57 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-----------------------------------------
Confidence 578999999999999999999998876222111111100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~-~~~ 190 (609)
....+.+ ......+.||||||.... ..+...|++.+|++|+|++..+... . ...
T Consensus 58 ----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 113 (213)
T 3cph_A 58 ----------KIKTVDI-NGKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIKQ 113 (213)
T ss_dssp ----------EEEEEEE-TTEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 0001111 111236899999996543 2335678999999988776543211 1 124
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRRE 260 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 260 (609)
++..+....+.+.|+++|+||+|+.+......+. .......+..|+.+++.++.++++++..+.....+
T Consensus 114 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 114 WFKTVNEHANDEAQLLLVGNKSDMETRVVTADQG-EALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHH-HHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCcccccCHHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4455555556678999999999995333221111 11111234567888888888888777766655444
No 50
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.46 E-value=7.5e-14 Score=130.81 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||+|+|++..+ +.....++.......
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~------------------------------------- 49 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKI------------------------------------- 49 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEE-------------------------------------
Confidence 567999999999999999999999865 222222221111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~-~~~ 190 (609)
+.+ ......+.||||||.... ..+...|++.++++|++++..+... . ...
T Consensus 50 --------------~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 101 (181)
T 2fn4_A 50 --------------CSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVGK 101 (181)
T ss_dssp --------------EEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHH
Confidence 001 111236789999997653 2345678889999988775443211 0 112
Q ss_pred HHH-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AIK-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
++. +.+.....+.|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 102 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 102 LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 222 33555666789999999999976432111111111122345677777777777777666555443
No 51
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.46 E-value=1.9e-13 Score=148.59 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=98.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+++|.+|+|||||+|+|+|.+. ..++..|++++
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~-----~~~~~~~gtt~------------------------------------- 231 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER-----VIVSNVAGTTR------------------------------------- 231 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc-----cccCCCCCeEE-------------------------------------
Confidence 578999999999999999999999864 23333442222
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHH-HHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENM-VRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~-v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.+ ....+.. +...++||||||+.+....... .+....+ ...|++.+|++|++++ +...+..++
T Consensus 232 ------~~--~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~---~e~~~~~~~~~~~~~ad~~llviD-~~~~~~~~~- 295 (456)
T 4dcu_A 232 ------DA--VDTSFTY---NQQEFVIVDTAGMRKKGKVYET---TEKYSVLRALKAIDRSEVVAVVLD-GEEGIIEQD- 295 (456)
T ss_dssp ------CT--TSEEEEE---TTEEEEETTGGGTTTBTTBCCC---CSHHHHHHHHHHHHHCSEEEEEEE-TTTCCCHHH-
T ss_pred ------EE--EEEEEEE---CCceEEEEECCCCCcCcccchH---HHHHHHHHHHHHHhhCCEEEEEEe-CCCCcCHHH-
Confidence 00 0111111 2237899999998765432111 1122222 3468899999988654 444554444
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcH----HHHHhcccccc-CCceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDA----VDILEGKSYKL-RYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~----~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
..++..+...+.++|+|+||+|+.+..... .+.+....... ..+|+.+++.++.++++++..+..
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHH
Confidence 345555555789999999999998755322 22222111111 245666666666777776655543
No 52
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.6e-13 Score=127.34 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=90.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|+|++|||||||+|++++..+.+ .. ..| .+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~-~~t-~~~~~~-------------------------------------- 41 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-SY-IPT-VEDTYR-------------------------------------- 41 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-SC-CCC-SCEEEE--------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CC-CCC-ccccEE--------------------------------------
Confidence 3589999999999999999999987521 11 111 111111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~ 191 (609)
. .+ ........+.+|||||..+. ..+...|++.+|++|++++..+.. +. ...+
T Consensus 42 ---------~--~~-~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 96 (172)
T 2erx_A 42 ---------Q--VI-SCDKSICTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPI 96 (172)
T ss_dssp ---------E--EE-EETTEEEEEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHH
T ss_pred ---------E--EE-EECCEEEEEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHH
Confidence 0 00 01111236889999997653 456778899999998877554321 11 1223
Q ss_pred HHHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+..+.+... .+.|+++|+||+|+.+................+..|+.+++.++.++++++..+.
T Consensus 97 ~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 162 (172)
T 2erx_A 97 YEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162 (172)
T ss_dssp HHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHH
Confidence 333333321 3689999999999975432111111111122235677777777777766555443
No 53
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.46 E-value=2.3e-13 Score=137.77 Aligned_cols=173 Identities=16% Similarity=0.227 Sum_probs=87.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------ 45 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------ 45 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC------------------------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc------------------------------------------
Confidence 35899999999999999999999887554431111000
Q ss_pred cCCCCcccCCceEEEEecCC-CCCcEEEeCCCCccccCC-CCccchHHHHHHHHHHhhcC-------------CceEEEE
Q 007296 114 TGRSKAISTVPIHLSIFSPN-VVNLTLIDLPGLTKVAVD-GQPESIVQDIENMVRSYIEK-------------PNCIILA 178 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~-------------~~~iIL~ 178 (609)
.. ++..+.....+...+ ...++||||||+...... ..-..+.+.+.+....|+.. +|+++++
T Consensus 46 -~~--t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~ 122 (274)
T 3t5d_A 46 -KK--TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYF 122 (274)
T ss_dssp ------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEE
T ss_pred -CC--ceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEE
Confidence 00 011111122222211 237899999998653221 11122333334444666664 6788888
Q ss_pred EecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhccccccCCceeeEeeCChhhhcccccH
Q 007296 179 ISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 179 v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
+.+++..+...+ ..+.+.+.. +.|+|+|+||+|+.....- ..+.+.......+..++.+.+.++++++++...
T Consensus 123 i~~~~~~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~ 197 (274)
T 3t5d_A 123 IAPSGHGLKPLD-IEFMKRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKK 197 (274)
T ss_dssp ECSCCSSCCHHH-HHHHHHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHH
T ss_pred ecCCCCCCCHHH-HHHHHHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHH
Confidence 877765555544 347777776 8999999999999754321 111111111122344555666666666555443
No 54
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.46 E-value=1.7e-13 Score=129.43 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=92.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|+|++|||||||+|+|++..+ +.....++.......
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~-------------------------------------- 44 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQ-------------------------------------- 44 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEE--------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEE--------------------------------------
Confidence 35899999999999999999998875 222222221110000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~ 191 (609)
+ ........+.||||||.... ..+...|++.+++++++++..+... ....+
T Consensus 45 -------------~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 45 -------------V-VIDGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97 (189)
T ss_dssp -------------E-EETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred -------------E-EECCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 0 01111235779999996653 3356688899999988765543211 11223
Q ss_pred HH-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 192 IK-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 192 l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
+. +.......+.|+++|+||+|+.+...... .........+..|+.+++.++.++++++..+....
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRTVDTK-QAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCSSCHH-HHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccccCHH-HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 22 23334456789999999999985443221 11111223345677787777778777766555443
No 55
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.46 E-value=2.3e-13 Score=147.05 Aligned_cols=167 Identities=15% Similarity=0.215 Sum_probs=97.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|++||++|||||||+|+|+|..+ ..++..|.+++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~-----~~~~~~~gtT~------------------------------------- 211 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEER-----VIVSNVAGTTR------------------------------------- 211 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-----EEEC--------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCc-----eeecCCCCcee-------------------------------------
Confidence 568999999999999999999999876 22333332222
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
... ... +.. +...+.||||||+.+..... +.++..-......|++.+|+++++++ ++.....++ .
T Consensus 212 ------d~~--~~~--~~~-~~~~~~l~DT~G~~~~~~~~--~~~e~~~~~~~~~~~~~ad~~llv~D-~~~~~s~~~-~ 276 (436)
T 2hjg_A 212 ------DAV--DTS--FTY-NQQEFVIVDTAGMRKKGKVY--ETTEKYSVLRALKAIDRSEVVAVVLD-GEEGIIEQD-K 276 (436)
T ss_dssp --------C--CEE--EEE-TTEEEEETTHHHHTCBTTBC--CCCSHHHHHHHHHHHHHCSEEEEEEE-TTTCCCHHH-H
T ss_pred ------eee--EEE--EEE-CCeEEEEEECCCcCcCcccc--chHHHHHHHHHHHHHHhCCEEEEEEc-CCcCCcHHH-H
Confidence 000 011 111 12358999999986643321 11111111123468899999888664 444444444 3
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHH-HH---Hhcc-ccccCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAV-DI---LEGK-SYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~-~~---l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++..+...+.++|+|+||+|+.+...... ++ +... ......+++.+++.++.++++++.....
T Consensus 277 ~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 277 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHH
Confidence 466655556899999999999987543221 11 1111 1111245667777777788776665544
No 56
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=1.4e-13 Score=132.64 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=97.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..+ +...+.+.-.. .
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~--~-------------------------------------- 63 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVD--F-------------------------------------- 63 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEE--E--------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCcccee--E--------------------------------------
Confidence 357999999999999999999998875 32221111000 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
....+.+ ......+.||||||..+. ..+...|++.+|++|+|++..+... ....
T Consensus 64 ----------~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~ 119 (201)
T 2ew1_A 64 ----------MIKTVEI-NGEKVKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLPE 119 (201)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHGGGSTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 0001111 111236889999996542 5677889999999988775543221 1134
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
++..+....+.+.++++|+||+|+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 120 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 120 WLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 55555666666789999999999975432111111111122335677777777777776665554433
No 57
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.46 E-value=1.1e-13 Score=129.59 Aligned_cols=156 Identities=13% Similarity=0.260 Sum_probs=96.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||+++|++..+.+.....+|.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~------------------------------------------ 44 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQH------------------------------------------ 44 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTT------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEe------------------------------------------
Confidence 68999999999999999999999988632221111111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+... .+.+ +...+.+|||||...... +...|+..+|++|++++. +.. .....+
T Consensus 45 -------~~~~--~~~~---~~~~~~l~Dt~G~~~~~~-------------~~~~~~~~~d~~i~v~d~-~~~-~~~~~~ 97 (178)
T 2lkc_A 45 -------IGAY--QVTV---NDKKITFLDTPGHEAFTT-------------MRARGAQVTDIVILVVAA-DDG-VMPQTV 97 (178)
T ss_dssp -------CCCC--EEEE---TTEEEEESCCCSSSSSSC-------------SCCSSCCCCCEEEEEEET-TCC-CCHHHH
T ss_pred -------eeEE--EEEe---CCceEEEEECCCCHHHHH-------------HHHHHHhhCCEEEEEEEC-CCC-CcHHHH
Confidence 1111 1111 123678999999765432 234677889999887753 332 234445
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCC-cHHHHHhcc-ccccC----CceeeEeeCChhhhcccccHHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGT-DAVDILEGK-SYKLR----YPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~-~~~l~----~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
..+..+...+.|+++|+||+|+.+... ...+.+... ..... ..|+.+++.++.++++++..+...
T Consensus 98 ~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 168 (178)
T 2lkc_A 98 EAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLV 168 (178)
T ss_dssp HHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHh
Confidence 566666666789999999999986431 222222211 11111 357777777778887777665543
No 58
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=132.51 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=95.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..+ +.... |+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~-----~t~--------------------------------------- 62 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAF-SERQG-----STI--------------------------------------- 62 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCC-CCCCC-----CCc---------------------------------------
Confidence 467999999999999999999998875 21111 100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+..+. ...+.+ ......+.||||||..+. ..+...|++.+|++|+|++..+... ....
T Consensus 63 ----~~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 122 (201)
T 2hup_A 63 ----GVDFT--MKTLEI-QGKRVKLQIWDTAGQERF-------------RTITQSYYRSANGAILAYDITKRSSFLSVPH 122 (201)
T ss_dssp ------CEE--EEEEEE-TTEEEEEEEECCTTCGGG-------------HHHHHHHHTTCSEEEEEEETTBHHHHHTHHH
T ss_pred ----ceEEE--EEEEEE-CCEEEEEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 00000 011111 111247889999997543 5678899999999998776543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCC-ceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
++..+......+.++++|+||+|+.+......+.+.......+. .|+.+++.++.++++++..+....
T Consensus 123 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 123 WIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 44444555556789999999999976332111111111122334 667777777777777666554443
No 59
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.46 E-value=2.4e-13 Score=129.77 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH---HHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~---~l~l~~~~d~~~~rti~VltK 211 (609)
..+.||||||.... ..+...|++.+|++|+|++..+ ...... ++..+.... +.|+++|+||
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~-~~s~~~~~~~~~~i~~~~--~~piilv~NK 156 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFDISN-SNTLDRAKTWVNQLKISS--NYIIILVANK 156 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEETTC-HHHHHHHHHHHHHHHHHS--CCEEEEEEEC
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCC-HHHHHHHHHHHHHHHhhC--CCcEEEEEEC
Confidence 46889999996543 3356788999999988765433 222222 222223222 3899999999
Q ss_pred cCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 212 IDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+|..+......+... .....+..|+.+++.++.++++++..+..
T Consensus 157 ~D~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 200 (208)
T 3clv_A 157 IDKNKFQVDILEVQK-YAQDNNLLFIQTSAKTGTNIKNIFYMLAE 200 (208)
T ss_dssp TTCC-CCSCHHHHHH-HHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred CCcccccCCHHHHHH-HHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence 993222222222111 11223456777777777777666555443
No 60
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.45 E-value=7.8e-14 Score=130.45 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|+|++|||||||+|++++..+.+......+.-. .
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~---~-------------------------------------- 52 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDF---L-------------------------------------- 52 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E--------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEE---E--------------------------------------
Confidence 36899999999999999999998776222111111000 0
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~ 191 (609)
...+.+ ......+.+|||||.... ..+...|++++|++|+|++..+.. + ....+
T Consensus 53 ----------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 53 ----------SKTMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108 (179)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred ----------EEEEEE-CCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 000111 111236889999996543 334668889999998877554321 1 11233
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+..+....+.+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 171 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 333344444578999999999997543211111111112234567777777777776655443
No 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.45 E-value=1e-13 Score=131.57 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|+|++..+.+......+ +..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~---~~~-------------------------------------- 59 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG---IDF-------------------------------------- 59 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCC---CEE--------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcee---EEE--------------------------------------
Confidence 356999999999999999999999876222111000 000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
....+.+ ......+.||||||..... .+...|++.+|++|+|++..+... ....
T Consensus 60 ----------~~~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 115 (189)
T 2gf9_A 60 ----------KVKTVYR-HDKRIKLQIWDTAGQERYR-------------TITTAYYRGAMGFLLMYDIANQESFAAVQD 115 (189)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEECCSCCSSC-------------CSGGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEeCCCcHHHh-------------hhHHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 0001111 1122468899999976532 235678899999988775543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..+......+.|+++|+||+|+.+......+........++..|+.+++.++.++++++..+..
T Consensus 116 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 181 (189)
T 2gf9_A 116 WATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181 (189)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444455555567899999999999764321111111111122345666666666666655554443
No 62
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.45 E-value=7.9e-14 Score=139.93 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-++|+++|++|||||||+|+|+|..+ +.+ ..|
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~-----~~p----------------------------------------- 36 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVA-----NWP----------------------------------------- 36 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEE-----ECT-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-ccc-----CCC-----------------------------------------
Confidence 357899999999999999999999875 221 111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh--cCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~v~~a~~d~~~~~ 190 (609)
| .++...... +.. ....+.||||||....... ... +.+...|+ .++|++|++++..+. ..
T Consensus 37 --g--~tv~~~~~~--~~~-~~~~~~l~DtpG~~~~~~~----~~~---e~v~~~~~~~~~~d~ii~V~D~t~~----~~ 98 (258)
T 3a1s_A 37 --G--VTVEKKEGV--FTY-KGYTINLIDLPGTYSLGYS----SID---EKIARDYLLKGDADLVILVADSVNP----EQ 98 (258)
T ss_dssp --T--SCCEEEEEE--EEE-TTEEEEEEECCCCSSCCSS----SHH---HHHHHHHHHHSCCSEEEEEEETTSC----HH
T ss_pred --C--ceEEEEEEE--EEE-CCeEEEEEECCCcCccCCC----CHH---HHHHHHHHhhcCCCEEEEEeCCCch----hh
Confidence 0 001111111 111 2357899999998765332 111 34566777 479999887765442 23
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.+.+..++...+.|+++|+||+|+.+... +...+. ..++.+++.+++.++.|+++++..+..
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQ----KHLGIPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHH----HHHCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHH----HHcCCCEEEEEeeCCcCHHHHHHHHHH
Confidence 34455666667899999999999864322 222222 233467777788777888777665544
No 63
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.45 E-value=3.5e-14 Score=133.12 Aligned_cols=157 Identities=12% Similarity=0.089 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|.+|||||||+|+|+|..+.+......|.-.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~----------------------------------------- 46 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF----------------------------------------- 46 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE-----------------------------------------
Confidence 578999999999999999999999876211111111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--- 189 (609)
....+.+ ......+.+|||||..... .+...|++.+|++|+|++..+. ....
T Consensus 47 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 101 (181)
T 3tw8_B 47 ----------KIRTVEI-NGEKVKLQIWDTAGQERFR-------------TITSTYYRGTHGVIVVYDVTSA-ESFVNVK 101 (181)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEETTGGGCS-------------SCCGGGGTTCSEEEEEEETTCH-HHHHHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEcCCCchhhh-------------hhHHHHhccCCEEEEEEECCCH-HHHHHHH
Confidence 0001111 1111368899999965432 2345788999999887655432 2222
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++....... .+.|+++|+||+|+.+................+..|+.+++.++.++++++..+..
T Consensus 102 ~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 102 RWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp HHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 2333333333 25899999999998754321111111111222345666666666666655544433
No 64
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=1.3e-13 Score=127.64 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=88.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|++|||||||+|++++..+.+......+.-.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~------------------------------------------- 40 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAF------------------------------------------- 40 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE-------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-------------------------------------------
Confidence 5799999999999999999998875222111111000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---HH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS---DA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~---~~ 191 (609)
....+.+ ......+.+|||||.... ..+...|++++|++|++++..+. .... .+
T Consensus 41 --------~~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~ 97 (170)
T 1ek0_A 41 --------LTQRVTI-NEHTVKFEIWDTAGQERF-------------ASLAPXYYRNAQAALVVYDVTKP-QSFIKARHW 97 (170)
T ss_dssp --------EEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCH-HHHHHHHHH
T ss_pred --------EEEEEEE-CCEEEEEEEEECCCChhh-------------hhhhhhhhccCcEEEEEEecCCh-HHHHHHHHH
Confidence 0001111 111236889999996543 34577889999999887655432 1111 23
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
+.........+.|+++|+||+|+.+... ...+.........+..|+.+++.++.++++++..
T Consensus 98 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1ek0_A 98 VKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 3333334445789999999999976421 1111111111122345666676666666654443
No 65
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.45 E-value=7.5e-14 Score=141.07 Aligned_cols=152 Identities=20% Similarity=0.320 Sum_probs=95.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.++|+++|++|||||||+|+|+|..+. +...|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~------v~~~pg----------------------------------------- 35 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR------VGNWPG----------------------------------------- 35 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC------CCSSSC-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc------ccCCCC-----------------------------------------
Confidence 578999999999999999999998642 122221
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.+.+.....+.. ...+.+|||||....... ... +.+...|+. ++|++|++++..+. ...
T Consensus 36 ------~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~----~~~---e~v~~~~~~~~~~d~vi~V~D~t~~----e~~ 96 (272)
T 3b1v_A 36 ------VTVERKSGLVKK--NKDLEIQDLPGIYSMSPY----SPE---AKVARDYLLSQRADSILNVVDATNL----ERN 96 (272)
T ss_dssp ------CCCSCEEEECTT--CTTEEEEECCCCSCSSCS----SHH---HHHHHHHHHTTCCSEEEEEEEGGGH----HHH
T ss_pred ------CcEEEEEEEEec--CCeEEEEECCCcCccCCC----ChH---HHHHHHHHhcCCCCEEEEEecCCch----HhH
Confidence 001111111222 457999999998875322 111 456677876 59999887765432 223
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
+.+..++...+.|+++|+||+|+..... +...+. ..++.+++.+++.++.|+++++..+.
T Consensus 97 ~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~----~~lg~~vi~~SA~~g~gi~el~~~i~ 159 (272)
T 3b1v_A 97 LYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS----YHLGVPVVATSALKQTGVDQVVKKAA 159 (272)
T ss_dssp HHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH----HHHTSCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH----HHcCCCEEEEEccCCCCHHHHHHHHH
Confidence 3344444446899999999999864321 222222 22345677888888888877665543
No 66
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.45 E-value=1.1e-13 Score=128.55 Aligned_cols=153 Identities=13% Similarity=0.203 Sum_probs=90.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|++|||||||+|++++..+.. ..|+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-------~~~t---------------------------------------- 38 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-------TIPT---------------------------------------- 38 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-------CCCC----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-------cCCc----------------------------------------
Confidence 46799999999999999999999876521 1110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.++... .+.+ +...+.+|||||.... ..+...|++++|++|+|++..+.. ......
T Consensus 39 -----~~~~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 94 (171)
T 1upt_A 39 -----IGFNVE--TVTY---KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRD-RIGISK 94 (171)
T ss_dssp -----SSEEEE--EEEE---TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCT-THHHHH
T ss_pred -----CccceE--EEEE---CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHH-HHHHHH
Confidence 001000 1111 1357899999997653 334567899999998877554322 122222
Q ss_pred HHHH-HhC---CCCCceEEEecccCcCCCCC--cHHHHHh-ccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISR-EVD---PRGDRTFGVLTKIDLMDKGT--DAVDILE-GKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~-~~d---~~~~rti~VltK~D~~~~~~--~~~~~l~-~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.... .+. ..+.|+++|+||+|+.+... ...+.+. ......+..|+.+++.++.++++.+..+..
T Consensus 95 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 165 (171)
T 1upt_A 95 SELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 165 (171)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHH
Confidence 2222 222 25789999999999986532 1222221 011122335666666666777666655443
No 67
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.45 E-value=1.8e-13 Score=125.79 Aligned_cols=154 Identities=14% Similarity=0.190 Sum_probs=90.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|.+|||||||+|++++..+.+ ....++.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~----------------------------------------- 41 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-ECDPTIEDSYR----------------------------------------- 41 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-CCCTTCCEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc-ccCCccceEEE-----------------------------------------
Confidence 479999999999999999999887522 21111110000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~~~ 191 (609)
..+.+ ......+.+|||||..+. ..+...|++.++++|++++..+. ... ..+
T Consensus 42 ----------~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~ 96 (166)
T 2ce2_X 42 ----------KQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNT-KSFEDIHQY 96 (166)
T ss_dssp ----------EEEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCH-HHHHHHHHH
T ss_pred ----------EEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCH-HHHHHHHHH
Confidence 00011 111235789999996543 34567888999999887755432 111 223
Q ss_pred HHHHHH-hCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISRE-VDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+..+.. ....+.|+++|+||+|+.+......+ ........+.+++.+++.++.++++.+..+..
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHH-HHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhcccCHHH-HHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 332333 33347899999999999864322111 11111223456777777777777665554443
No 68
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.45 E-value=2.7e-13 Score=128.24 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+++|+|+|++|||||||+|+++|..+ +.+.. .+|+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~------------------------------------------- 36 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTR------------------------------------------- 36 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTT-------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccc-------------------------------------------
Confidence 47899999999999999999999875 32211 1111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcC-CceEEE--EEecCCCcccc-
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEK-PNCIIL--AISPANQDLAT- 188 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~-~~~iIL--~v~~a~~d~~~- 188 (609)
....+.+ ..+.+|||||+..... .+....+.+..+...|++. ++.+++ .|+++......
T Consensus 37 ----------~~~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 37 ----------KIIEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ----------SCEEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ----------eeEEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 1112222 1789999999754322 2333455667778888776 553322 23343321100
Q ss_pred hHH---------HHHHHHhCCCCCceEEEecccCcCCCCC-cHHHHHhcccccc---CCceeeEeeCChhhhcccccHHH
Q 007296 189 SDA---------IKISREVDPRGDRTFGVLTKIDLMDKGT-DAVDILEGKSYKL---RYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 189 ~~~---------l~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l---~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..+ ..+.+.+...+.|+++|+||+|+.+... ...++......+. ...|+.+++.++.++++.+..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 111 1233444445789999999999986531 1222221101100 11346666666666666555444
Q ss_pred H
Q 007296 256 A 256 (609)
Q Consensus 256 ~ 256 (609)
.
T Consensus 180 ~ 180 (190)
T 2cxx_A 180 E 180 (190)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.45 E-value=1.2e-13 Score=131.43 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=93.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|+|++..+.+......+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 55 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-------------------------------------------- 55 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CC--------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------------------------------------------
Confidence 456899999999999999999999876222111100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
..+. ...+.+ ......+.||||||.... ..+...|+++++++|+|++..+.+. ....
T Consensus 56 -----~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 114 (191)
T 2a5j_A 56 -----VEFG--ARMVNI-DGKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTS 114 (191)
T ss_dssp -----SSEE--EEEEEE-TTEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----ceeE--EEEEEE-CCEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 0000 011111 111246889999996543 2235678999999988776543221 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 115 ~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (191)
T 2a5j_A 115 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4444455555678999999999997543211111111112233467777777777777666554433
No 70
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.45 E-value=5.7e-14 Score=152.10 Aligned_cols=158 Identities=21% Similarity=0.226 Sum_probs=87.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+++|.+|||||||+|+|+|.++ .+++..|++++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~gtT~-------------------------------------- 260 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDR-----AIVTDLPGTTR-------------------------------------- 260 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHB-----SCCSCCTTCCH--------------------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCCeeE--------------------------------------
Confidence 34699999999999999999999765 33444442111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+.... +.+ +..+++||||||+...... .....-.....+++.+|+++++++..+ .....+ ..
T Consensus 261 -----d~~~~~--i~~---~g~~v~liDT~G~~~~~~~-----ve~~gi~~~~~~~~~aD~vl~VvD~s~-~~~~~~-~~ 323 (462)
T 3geh_A 261 -----DVVESQ--LVV---GGIPVQVLDTAGIRETSDQ-----VEKIGVERSRQAANTADLVLLTIDAAT-GWTTGD-QE 323 (462)
T ss_dssp -----HHHHHE--EEE---TTEEEEECC-------------------------CCCCSCSEEEEEEETTT-CSCHHH-HH
T ss_pred -----EEEEEE--EEE---CCEEEEEEECCccccchhH-----HHHHHHHHHhhhhhcCCEEEEEeccCC-CCCHHH-HH
Confidence 000001 111 2346889999998653111 111111234567889999988765443 333332 34
Q ss_pred HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+.+.+.. .|+++|+||+|+.+.... ..+ .......+++.+++.++.|+++++..+...
T Consensus 324 i~~~l~~--~piivV~NK~Dl~~~~~~--~~~--~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~ 381 (462)
T 3geh_A 324 IYEQVKH--RPLILVMNKIDLVEKQLI--TSL--EYPENITQIVHTAAAQKQGIDSLETAILEI 381 (462)
T ss_dssp HHHHHTT--SCEEEEEECTTSSCGGGS--TTC--CCCTTCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHhccC--CcEEEEEECCCCCcchhh--HHH--HHhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5555543 699999999999765321 111 112234568888888888888877666543
No 71
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.44 E-value=2.6e-13 Score=126.87 Aligned_cols=159 Identities=15% Similarity=0.206 Sum_probs=91.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||+|++++..+.+.. .|+
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------~~~---------------------------------------- 39 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL------FHT---------------------------------------- 39 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----------C----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC------CCc----------------------------------------
Confidence 4679999999999999999999988752111 110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~-~~~ 190 (609)
.+.......+.+ ......+.||||||.... ..+...|++.++++|++++..+... . ...
T Consensus 40 -----~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 100 (177)
T 1wms_A 40 -----IGVEFLNKDLEV-DGHFVTMQIWDTAGQERF-------------RSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN 100 (177)
T ss_dssp -----CSEEEEEEEEEE-TTEEEEEEEEECCCCGGG-------------HHHHGGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----eeeeEEEEEEEE-CCEEEEEEEEeCCCchhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 000000011111 111236889999996542 5667789999999988765443211 1 122
Q ss_pred HHHHHHHhC----CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVD----PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++....... ..+.|+++|+||+|+.+......+...-........|+.+++.++.++++.+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 101 WKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp HHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 333222222 256899999999999743322222111001123456777777777777766654443
No 72
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=9.8e-14 Score=132.11 Aligned_cols=159 Identities=15% Similarity=0.172 Sum_probs=96.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+.+......+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 57 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG-------------------------------------------- 57 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEET--------------------------------------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCee--------------------------------------------
Confidence 567999999999999999999998775221110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~ 190 (609)
.......+.+ ......+.||||||... ...+...|++.+|++|+|++..+.. .....
T Consensus 58 -------~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 116 (191)
T 3dz8_A 58 -------IDFKVKTVYR-HEKRVKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESFNAVQD 116 (191)
T ss_dssp -------TTEEEEEEEE-TTTTEEEEEECHHHHHH-------------CHHHHHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------eEEEEEEEEE-CCEEEEEEEEeCCChHH-------------HHHHHHHHHccCCEEEEEEECcCHHHHHHHHH
Confidence 0000111111 12234689999999443 2667889999999998877654321 11133
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..+......+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 117 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 117 WATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 555556666678999999999999654322111111111223456777777776776665554443
No 73
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.44 E-value=1.6e-13 Score=132.24 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=92.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+++|++..+ +......+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~-------------------------------------------- 41 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTY-TNDYISTI-------------------------------------------- 41 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCC-CTTCCCSS--------------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcc--------------------------------------------
Confidence 457999999999999999999999875 22211100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+.......+.+ ......+.||||||..... .+...|++.+|++|+|++..+.+. ....
T Consensus 42 ------~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~vilv~d~~~~~s~~~~~~ 101 (206)
T 2bcg_Y 42 ------GVDFKIKTVEL-DGKTVKLQIWDTAGQERFR-------------TITSSYYRGSHGIIIVYDVTDQESFNGVKM 101 (206)
T ss_dssp ------CCCEEEEEEEE-TTEEEEEEEECCTTTTTTT-------------CCCGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------cceeEEEEEEE-CCEEEEEEEEeCCChHHHH-------------HHHHHhccCCCEEEEEEECcCHHHHHHHHH
Confidence 00000011111 1112368899999976532 235578899999988775543211 1122
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
++..+......+.++++|+||+|+.+......+.........+..|+.+++.++.++++++..+...
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 102 WLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQ 168 (206)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3444455555678999999999997643211111111111233456666666666666655544433
No 74
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.44 E-value=2.6e-13 Score=127.35 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|++++..+.+......+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-------------------------------------------- 46 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG-------------------------------------------- 46 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSC--------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCce--------------------------------------------
Confidence 356899999999999999999998876221111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~ 189 (609)
.......+.+ ......+.||||||.... ..+...|++.+|++|+|++..+ .... .
T Consensus 47 -------~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~ 104 (181)
T 2efe_B 47 -------AAFFSQTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVFDVTN-QASFERAK 104 (181)
T ss_dssp -------CSEEEEEEEE-TTEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEEEEEETTC-HHHHHHHH
T ss_pred -------eEEEEEEEEE-CCEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEEEEEECCC-HHHHHHHH
Confidence 0000001111 111236889999996543 3456788999999988765433 2221 2
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
.++..+......+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++++..+.
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 233334444445789999999999976443111111111112334577777777777766555443
No 75
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.44 E-value=8.9e-14 Score=128.64 Aligned_cols=156 Identities=17% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|+|++..+ +......+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~----------------------------------------- 41 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIF-TKDYKKTIGVD----------------------------------------- 41 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCC-CCCSSCCCSSS-----------------------------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCceEEE-----------------------------------------
Confidence 357899999999999999999998765 22111110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~ 190 (609)
+ ....+.+ ......+.+|||||.... ..+...|++.+|++|++++..+.. +. ...
T Consensus 42 -------~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 98 (168)
T 1z2a_A 42 -------F--LERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAISS 98 (168)
T ss_dssp -------E--EEEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------E--EEEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHH
Confidence 0 0011111 111246889999996543 234567899999998877554322 11 112
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
++..+.... .+.|+++|+||+|+.+......+.+.......+..|+.+++.++.++++.+..+
T Consensus 99 ~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 99 WREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp HHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred HHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 333222222 468999999999997643211111111112233456666666666665555443
No 76
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.44 E-value=5.7e-14 Score=131.49 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=91.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..+ +......+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~-------------------------------------------- 39 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTI-------------------------------------------- 39 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTT--------------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCce--------------------------------------------
Confidence 457899999999999999999998775 21110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
+.......+.+.+.....+.+|||||.... ..+...|++++|++|+|++..+.+. ....
T Consensus 40 ------~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (178)
T 2hxs_A 40 ------GLDFFLRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLED 100 (178)
T ss_dssp ------TSSEEEEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------eEEEEEEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 000001111121111257899999997653 2346788999999988776543221 1122
Q ss_pred HHHHHHHhCC--CCCc-eEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDP--RGDR-TFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~--~~~r-ti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..+....+ .+.+ +++|+||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 101 ~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 101 WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 3333333211 1345 7899999999764321111111111123456777888777777766655443
No 77
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.43 E-value=1.9e-13 Score=126.52 Aligned_cols=155 Identities=15% Similarity=0.173 Sum_probs=89.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+|+|++|||||||+|++++..+.+.... |. ....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~-~~~~--------------------------------------- 43 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--TI-GAAF--------------------------------------- 43 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CS-SEEE---------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--cc-ceEE---------------------------------------
Confidence 46899999999999999999998765221110 00 0000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~ 191 (609)
....+.+ ......+.+|||||.... ..+...|++.+|++|++++..+.. +. ...+
T Consensus 44 ---------~~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 100 (170)
T 1r2q_A 44 ---------LTQTVCL-DDTTVKFEIWDTAGQERY-------------HSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100 (170)
T ss_dssp ---------EEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred ---------EEEEEEE-CCEEEEEEEEeCCCcHHh-------------hhhhHHhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 0000111 111236889999996543 345678899999998877554321 11 1123
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCC-cHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGT-DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+..+......+.++++|+||+|+.+... ...+.. ......+..|+.+++.++.++++++..+
T Consensus 101 ~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 101 VKELQRQASPNIVIALSGNKADLANKRAVDFQEAQ-SYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp HHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEECccCccccccCHHHHH-HHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 3333333445688999999999975432 111111 1111233456667777767766655443
No 78
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=132.42 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|+|++..+. .... |+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~-----~t---------------------------------------- 60 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENIS-----AT---------------------------------------- 60 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCC-----CC----------------------------------------
Confidence 4679999999999999999999988752 1110 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
.+.+.....+.+ ......+.||||||.... ..+...|++.+|++|+|++..+... ....
T Consensus 61 -----~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~ 121 (199)
T 2p5s_A 61 -----LGVDFQMKTLIV-DGERTVLQLWDTAGQERF-------------RSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121 (199)
T ss_dssp ---------CEEEEEEE-TTEEEEEEEEECTTCTTC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -----ccceeEEEEEEE-CCEEEEEEEEECCCCcch-------------hhhHHHHHhhCCEEEEEEECCChHHHHHHHH
Confidence 000000111111 112246889999996543 5677889999999988775543211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC------CCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK------GTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~------~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
++..++.....+.|+++|+||+|+.+. .....+.........+..|+.+++.++.++++.+..+
T Consensus 122 ~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l 191 (199)
T 2p5s_A 122 WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHL 191 (199)
T ss_dssp HHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHH
Confidence 445555555567899999999999631 1100111111111223456666666666666555443
No 79
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=5.8e-13 Score=126.17 Aligned_cols=153 Identities=12% Similarity=0.186 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|.+|||||||+|++++..+. .. .|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~-----~~----------------------------------------- 46 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--HT-----SP----------------------------------------- 46 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--EE-----EC-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--cC-----cC-----------------------------------------
Confidence 4689999999999999999999987751 10 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.++... .+.+ +...+.+|||||..+. ..+...|++++|++|+|++..+.+ .-....
T Consensus 47 ----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 103 (187)
T 1zj6_A 47 ----TIGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRE-RISVTR 103 (187)
T ss_dssp ----CSCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTT-THHHHH
T ss_pred ----CCccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHH-HHHHHH
Confidence 1111111 1112 2357899999998653 334568899999998877654432 122222
Q ss_pred HHHHHh-C---CCCCceEEEecccCcCCCCC--cHHHHHhcc-ccccCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISREV-D---PRGDRTFGVLTKIDLMDKGT--DAVDILEGK-SYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~~-d---~~~~rti~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.....+ . ..+.|+++|+||+|+.+... +..+.+... ....+..|+.+++.++.++++++..+..
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (187)
T 1zj6_A 104 EELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 174 (187)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHH
Confidence 222222 1 35789999999999976432 122222111 1122345677777777777766655543
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.43 E-value=3.5e-13 Score=128.64 Aligned_cols=158 Identities=11% Similarity=0.146 Sum_probs=93.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
...++|+|+|++|||||||+++|++..+.......++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~------------------------------------------- 51 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATV------------------------------------------- 51 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCS-------------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccc-------------------------------------------
Confidence 3678999999999999999999999886221111111
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
++.... +. .....+.||||||..+. ..+...|++++|++|+|++..+.+ .....
T Consensus 52 -------~~~~~~----~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~ 105 (199)
T 4bas_A 52 -------GYNVET----FE-KGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSDHL-RLCVV 105 (199)
T ss_dssp -------SEEEEE----EE-ETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTCGG-GHHHH
T ss_pred -------ceeEEE----EE-eCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCcHH-HHHHH
Confidence 111000 11 23357899999998653 345568899999999877654432 11122
Q ss_pred HHHHHHhCC-----------CCCceEEEecccCcCCCCC--cHHHHHhccc--cccCCceeeEeeCChhhhcccccHHHH
Q 007296 192 IKISREVDP-----------RGDRTFGVLTKIDLMDKGT--DAVDILEGKS--YKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~l~~~~d~-----------~~~rti~VltK~D~~~~~~--~~~~~l~~~~--~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
......+.. .+.++|+|+||+|+.+... ...+.+.... ......|+.+++.++.++++++..+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 106 KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHH
Confidence 122222211 2689999999999986532 1122221000 113345677777777777776665554
Q ss_pred HH
Q 007296 257 RR 258 (609)
Q Consensus 257 ~~ 258 (609)
..
T Consensus 186 ~~ 187 (199)
T 4bas_A 186 TA 187 (199)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 81
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.43 E-value=2.1e-13 Score=126.52 Aligned_cols=159 Identities=10% Similarity=0.053 Sum_probs=85.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+.+|+|+|++|||||||+++++|..+-.......|.-.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDT------------------------------------------ 39 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CE------------------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCe------------------------------------------
Confidence 46899999999999999999998765111111111000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~~ 191 (609)
. ...+.+ ......+.+|||||..... ..+...|++.+|+++++++..+.. + ....+
T Consensus 40 -------~--~~~~~~-~~~~~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 97 (169)
T 3q85_A 40 -------Y--ERRIMV-DKEEVTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 97 (169)
T ss_dssp -------E--EEEEEE-TTEEEEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred -------e--eEEEEE-CCeEEEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHHH
Confidence 0 001111 1112467899999986531 124456778899998877554321 1 11223
Q ss_pred HH-HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 192 IK-ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 192 l~-l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+. +.......+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 98 ~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (169)
T 3q85_A 98 LLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163 (169)
T ss_dssp HHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHH
Confidence 33 233333347899999999999754322112221112233456777777777777766655543
No 82
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.43 E-value=8.6e-14 Score=133.73 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=93.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+ +......+.... ..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 63 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEF-SEGYDPTVENTY-SK------------------------------------- 63 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSCCCCCSEEEE-EE-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCC-CCCCCCccceEE-EE-------------------------------------
Confidence 567899999999999999999999876 222211111110 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.+ ........+.||||||..... .+...|++.+|++|++++..+.+ ......
T Consensus 64 -------------~~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 115 (201)
T 3oes_A 64 -------------IV-TLGKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLH-SFQVIE 115 (201)
T ss_dssp -------------EE-C----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHH-HHHHHH
T ss_pred -------------EE-EECCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHH-HHHHHH
Confidence 00 001123467899999976542 23557889999998877554321 111222
Q ss_pred HHHHHh----CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREV----DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.+...+ ...+.|+++|+||+|+.+................+..|+.+++.++.++++.+..+....
T Consensus 116 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 116 SLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp HHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222222 334689999999999975443111111111223345788888888888887776665443
No 83
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.43 E-value=2.2e-13 Score=150.81 Aligned_cols=167 Identities=16% Similarity=0.218 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcC--cccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFL--PRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~l--P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 110 (609)
..|.|+|+|.+|||||||+|+|+|.++. +.+...+|.+.+.+.. ...+.. . ++... +.+ .....
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~--~~~~~i----~--~g~~l-----~~~-~~~~~ 129 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMH--GETEGT----V--PGNAL-----VVD-PEKPF 129 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEEC--CSSSEE----E--CCC----------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEE--CCcccc----c--CCcee-----eec-CcccH
Confidence 5799999999999999999999999864 4666666655444431 111000 0 00000 000 00000
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHH--HHHHHHHhhcCCceEEEEEecCCCcccc
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQD--IENMVRSYIEKPNCIILAISPANQDLAT 188 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~--i~~~v~~yi~~~~~iIL~v~~a~~d~~~ 188 (609)
..+...+..+....++..+.++....++||||||+..... ..+... +..++..|+..+|++|+++++.+.+...
T Consensus 130 ~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~ 205 (550)
T 2qpt_A 130 RKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISD 205 (550)
T ss_dssp --------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCH
T ss_pred HHHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCH
Confidence 0111112334455555554433334799999999876321 111111 4577888999999998877654434433
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
. ...+++.+...+.++++|+||+|+.+..
T Consensus 206 ~-~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 206 E-FSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp H-HHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred H-HHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 3 3346777777788999999999998643
No 84
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.43 E-value=5.6e-13 Score=124.93 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=89.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|++||.+|||||||+|+|+|..+ + .++..|
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~-~----~~~~~~------------------------------------------ 36 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREA-A----IVTDIA------------------------------------------ 36 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC-S----CCCSST------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-c----eeeCCC------------------------------------------
Confidence 45899999999999999999999764 1 112222
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccchHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAI 192 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~~~~l 192 (609)
+.+..+... .+.+ +...+.+|||||+.+... ......-.....|++.+|+++++++..+.. .....++
T Consensus 37 -~~t~~~~~~--~~~~---~~~~~~l~Dt~G~~~~~~-----~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~ 105 (172)
T 2gj8_A 37 -GTTRDVLRE--HIHI---DGMPLHIIDTAGLREASD-----EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW 105 (172)
T ss_dssp -TCCCSCEEE--EEEE---TTEEEEEEECCCCSCCSS-----HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHC
T ss_pred -CceeceeeE--EEEE---CCeEEEEEECCCcccchh-----HHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH
Confidence 011111001 1111 123578999999875321 111111122346789999998877554322 2223344
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
..+....+.+.|+++|+||+|+.+...+. .......|+.+++.++.++++++..+
T Consensus 106 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-------~~~~~~~~~~~SA~~g~gv~~l~~~l 160 (172)
T 2gj8_A 106 PEFIARLPAKLPITVVRNKADITGETLGM-------SEVNGHALIRLSARTGEGVDVLRNHL 160 (172)
T ss_dssp HHHHHHSCTTCCEEEEEECHHHHCCCCEE-------EEETTEEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHhcccCCCEEEEEECccCCcchhhh-------hhccCCceEEEeCCCCCCHHHHHHHH
Confidence 44555555678999999999996533210 01122456666776667776655544
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.43 E-value=4.8e-13 Score=123.37 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|++|||||||+|++++..+ +. ..|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~------~~~-------------------------------------------- 30 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VT------TIP-------------------------------------------- 30 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SC------CCC--------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Cc------ccC--------------------------------------------
Confidence 699999999999999999998765 21 111
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKIS 195 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~ 195 (609)
+.++. ... +.. +...+.+|||||.... ..+...|++++|++|++++..+. ..........
T Consensus 31 -t~~~~--~~~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~ 90 (164)
T 1r8s_A 31 -TIGFN--VET--VEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDR-ERVNEAREEL 90 (164)
T ss_dssp -CSSCC--EEE--EEC-SSCEEEEEECCCCGGG-------------HHHHHHHTTTCSEEEEEEETTCG-GGHHHHHHHH
T ss_pred -cCcee--EEE--EEE-CCEEEEEEEcCCChhh-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHHHHHH
Confidence 00010 001 111 2357899999997542 56778899999999887655432 1122222222
Q ss_pred HHh----CCCCCceEEEecccCcCCCCCcHHHHHhccc----cccCCceeeEeeCChhhhcccccHHH
Q 007296 196 REV----DPRGDRTFGVLTKIDLMDKGTDAVDILEGKS----YKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 196 ~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..+ ...+.|+++|+||+|+.+... ..++..... .....+|+.+++.++.++++.+..+.
T Consensus 91 ~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 91 MRMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHhchhhcCCeEEEEEECcCCcCCCC-HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 222 224689999999999976432 222222111 11223466666666677766555443
No 86
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.43 E-value=2.1e-13 Score=127.87 Aligned_cols=158 Identities=12% Similarity=0.185 Sum_probs=87.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|++++..+.+......+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-------------------------------------------- 42 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG-------------------------------------------- 42 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CC--------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccc--------------------------------------------
Confidence 467999999999999999999999875211111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
.......+.+.+.....+.+|||||.... ..+...|++.+|++|+|++..+... ....
T Consensus 43 -------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 102 (182)
T 1ky3_A 43 -------ADFLTKEVTVDGDKVATMQVWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNASSFENIKS 102 (182)
T ss_dssp -------CSCEEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------eEEEEEEEEEcCCcEEEEEEEECCCChHh-------------hhhhHHHhhcCCEEEEEEECCChHHHHHHHH
Confidence 00001111111122346889999995432 4556788999999988775543221 1112
Q ss_pred HHHHHHHh----CCCCCceEEEecccCcCCCCC--c---HHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREV----DPRGDRTFGVLTKIDLMDKGT--D---AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~----d~~~~rti~VltK~D~~~~~~--~---~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
++...... ...+.|+++|+||+|+.+... . ..++.. ......|+.+++.++.++++++..+...
T Consensus 103 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~---~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 103 WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK---SLGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH---HTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH---hcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 22222222 235789999999999964322 1 122221 1234567888887777777766555443
No 87
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.43 E-value=2.5e-13 Score=128.99 Aligned_cols=154 Identities=14% Similarity=0.180 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+.+......+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 54 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG-------------------------------------------- 54 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCS--------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcc--------------------------------------------
Confidence 457999999999999999999998876221111100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHH-HHHHHhhcCCceEEEEEecCCCcc--cch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIE-NMVRSYIEKPNCIILAISPANQDL--ATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~-~~v~~yi~~~~~iIL~v~~a~~d~--~~~ 189 (609)
.......+.+ ......+.||||||..+. . .+...|++++|++|+|++..+... ...
T Consensus 55 -------~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 113 (189)
T 1z06_A 55 -------VDFRERAVDI-DGERIKIQLWDTAGQERF-------------RKSMVQHYYRNVHAVVFVYDMTNMASFHSLP 113 (189)
T ss_dssp -------CCEEEEEEEE-TTEEEEEEEEECCCSHHH-------------HTTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred -------eEEEEEEEEE-CCEEEEEEEEECCCchhh-------------hhhhhHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 0000011111 111246889999996432 3 567889999999988775543211 112
Q ss_pred HHHHHH-HHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCCh---hhhcccc
Q 007296 190 DAIKIS-REVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQ---ADINKSV 251 (609)
Q Consensus 190 ~~l~l~-~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~i~~~~ 251 (609)
.++..+ +.....+.++++|+||+|+.+......+.........+..|+.+++.++ .++++.+
T Consensus 114 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~ 179 (189)
T 1z06_A 114 AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF 179 (189)
T ss_dssp HHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHH
Confidence 333333 3344567899999999999754321111111111223456777777776 4444433
No 88
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.42 E-value=1.4e-13 Score=132.32 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|+|++..+.+......+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~-------------------------------------------- 59 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG-------------------------------------------- 59 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCccc--------------------------------------------
Confidence 457999999999999999999999876221111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
..+. ...+.+ ......+.||||||.... ..+...|++.+|++|+|++..+... ....
T Consensus 60 -----~~~~--~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 118 (200)
T 2o52_A 60 -----VEFG--SRVVNV-GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNSLAA 118 (200)
T ss_dssp -----CCEE--EEEEEE-TTEEEEEEEECCTTHHHH-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----ceeE--EEEEEE-CCeeeEEEEEcCCCcHhH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 0000 011111 111247889999995432 2345678999999988775543221 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC-cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT-DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
++..+......+.++++|+||+|+.+... ...+... .....+..|+.+++.++.++++++..+.....
T Consensus 119 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 119 WLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34444444556789999999999975432 1111111 11223456788888888888777766654443
No 89
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.42 E-value=2.6e-13 Score=131.75 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=67.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCC----CCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP----RGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~----~~~rti~Vlt 210 (609)
..+.||||||... ...+...|++.+|++|+|++..+ .........+...+.. .+.|+++|+|
T Consensus 84 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~-~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLMFDLTS-QQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESHHH-------------HHHHHHHHHTTCCEEEEEEETTC-HHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCcHh-------------HHhHHHHHhcCCCEEEEEEECcC-HHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 3688999999432 36678899999999988765433 2222222234444432 5689999999
Q ss_pred ccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 211 KIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
|+|+.+......+.........+..|+.+++.++.++++++..+....
T Consensus 150 K~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 150 KADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp CTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 999975432111111111122345677777777777776666554443
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.42 E-value=3.5e-13 Score=128.04 Aligned_cols=155 Identities=16% Similarity=0.210 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|+|..+++..... |.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-t~------------------------------------------- 55 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP-TI------------------------------------------- 55 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCC-CS-------------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCC-cc-------------------------------------------
Confidence 5679999999999999999999998732322211 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~ 190 (609)
++... . +.. +...+.||||||.... ..+...|++++|++|+|++..+.. +.. ..
T Consensus 56 ------~~~~~--~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~ 111 (190)
T 2h57_A 56 ------GFSIE--K--FKS-SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKE 111 (190)
T ss_dssp ------SEEEE--E--EEC-SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEETTCHHHHHHHHH
T ss_pred ------ceeEE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 11000 1 111 2357899999996653 334567899999998876543321 111 11
Q ss_pred HHH-HHHHhCC--CCCceEEEecccCcCCCCC--cHHHHHhccc-cccCCceeeEeeCChhhhcccccHHH
Q 007296 191 AIK-ISREVDP--RGDRTFGVLTKIDLMDKGT--DAVDILEGKS-YKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 191 ~l~-l~~~~d~--~~~rti~VltK~D~~~~~~--~~~~~l~~~~-~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++. +...... .+.++++|+||+|+.+... +..+.+.... ......|+.+++.++.++++++..+.
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 112 ELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 182 (190)
T ss_dssp HHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 222 2222222 5789999999999976432 1223322111 11234566777777777766655444
No 91
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.42 E-value=1.5e-13 Score=129.22 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||+|++++..+ +......+.... ..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~-~~------------------------------------- 45 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTF-TK------------------------------------- 45 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEE-EE-------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccE-EE-------------------------------------
Confidence 457999999999999999999997665 322222221111 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc--chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA--TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~--~~~ 190 (609)
.+.+ ......+.||||||..... .+...|++.+|++|++++..+.+.. ...
T Consensus 46 -------------~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (181)
T 3t5g_A 46 -------------LITV-NGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKSFEVIKV 98 (181)
T ss_dssp -------------EEEE-TTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHH
Confidence 0001 1112367899999977642 2345688899999887755432110 111
Q ss_pred HH-HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 191 AI-KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 191 ~l-~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
++ .+.+.....+.|+++|+||+|+.+......+.........+..|+.+++.++.++++.+..+....
T Consensus 99 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 99 IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 22 233444555789999999999975443212222212223345688888888888887776555433
No 92
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.42 E-value=9.2e-14 Score=130.93 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..+ +... .|+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-----~~t~--------------------------------------- 41 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTF-----ISTI--------------------------------------- 41 (183)
T ss_dssp EEEEEEEECCCCC-----------------CH-----HHHH---------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCC-----CCcc---------------------------------------
Confidence 357899999999999999999998765 2111 1100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
| ..+. ...+.+ ......+.||||||.... ..+...|++++|++|+|++..+... ....
T Consensus 42 --~--~~~~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 101 (183)
T 2fu5_C 42 --G--IDFK--IRTIEL-DGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGIMLVYDITNEKSFDNIRN 101 (183)
T ss_dssp --C--EEEE--EEEEEE-TTEEEEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHH
T ss_pred --c--ceeE--EEEEEE-CCEEEEEEEEcCCCChhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 0 0000 001111 111246889999996543 3456678999999988775543211 1122
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..+......+.|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+..
T Consensus 102 ~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 167 (183)
T 2fu5_C 102 WIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167 (183)
T ss_dssp HHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 344444444457899999999999764321111111111122345666666666666665554443
No 93
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.41 E-value=1.3e-13 Score=132.45 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHHHHHHhCC---CCCceEEEe
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVDP---RGDRTFGVL 209 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~l~~~~d~---~~~rti~Vl 209 (609)
..+.||||||.... ..+...|++++|++|+|++..+... ....++..+....+ .+.|+++|+
T Consensus 73 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 73 VELFLLDTAGSDLY-------------KEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEEETTTTHHH-------------HHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEEECCCcHHH-------------HHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 46899999997542 5677889999999988775543221 11234444444444 578999999
Q ss_pred cccCcCC
Q 007296 210 TKIDLMD 216 (609)
Q Consensus 210 tK~D~~~ 216 (609)
||+|+.+
T Consensus 140 nK~Dl~~ 146 (208)
T 2yc2_C 140 NKTDLPP 146 (208)
T ss_dssp ECC----
T ss_pred ECcccch
Confidence 9999976
No 94
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.41 E-value=3.4e-13 Score=129.63 Aligned_cols=158 Identities=14% Similarity=0.201 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|+|++..+.+......+.-. .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~------------------------------------- 46 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF---L------------------------------------- 46 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE---E-------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE---E-------------------------------------
Confidence 467999999999999999999999876322111111000 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~-~~~ 190 (609)
...+.+ ......+.||||||..... .+...|++++|++|++++..+... . ...
T Consensus 47 -----------~~~~~~-~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 101 (207)
T 1vg8_A 47 -----------TKEVMV-DDRLVTMQIWDTAGQERFQ-------------SLGVAFYRGADCCVLVFDVTAPNTFKTLDS 101 (207)
T ss_dssp -----------EEEEES-SSCEEEEEEEEECSSGGGS-------------CSCCGGGTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEeCCCcHHHH-------------HhHHHHHhCCcEEEEEEECCCHHHHHHHHH
Confidence 000111 1112368899999965532 234568899999988765433211 1 112
Q ss_pred HHHHHHH-hC---CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 191 AIKISRE-VD---PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 191 ~l~l~~~-~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++..+.. .. +.+.|+++|+||+|+.+......+...-........|+.+++.++.++++++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 170 (207)
T 1vg8_A 102 WRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170 (207)
T ss_dssp HHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 3322222 21 24689999999999984432221111100112334566666666666655554443
No 95
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.41 E-value=5.2e-13 Score=126.64 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=84.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|.+|||||||+|+|++..+.+. ...++......
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~-------------------------------------- 60 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRK-------------------------------------- 60 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSC-CCTTCCEEEEE--------------------------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccc-cCCccceEEEE--------------------------------------
Confidence 346899999999999999999998875221 11111111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~ 189 (609)
.+.+ ......+.||||||.... ..+...|++.++++|++++..+.. .. .
T Consensus 61 -------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 112 (190)
T 3con_A 61 -------------QVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNSK-SFADIN 112 (190)
T ss_dssp -------------EEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHH-HHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCChHHH-------------HHHHHHhhCcCCEEEEEEECcCHH-HHHHHH
Confidence 0111 111235889999996542 456678999999998876543321 11 2
Q ss_pred HHHHHHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 190 DAIKISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 190 ~~l~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++..+... ...+.|+++|+||+|+.+......+.. ......+..|+.+++.++.++++.+..+..
T Consensus 113 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 179 (190)
T 3con_A 113 LYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAH-ELAKSYGIPFIETSAKTRQGVEDAFYTLVR 179 (190)
T ss_dssp HHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHH-HHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHH-HHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 233333332 335789999999999976432221111 111123345666666666666665554443
No 96
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.41 E-value=1.6e-13 Score=127.63 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=88.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-++|+++|++|||||||+|+|+|..+ +.+ ..|+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~-----~~~~~t--------------------------------------- 37 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIG-----NWPGVT--------------------------------------- 37 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC----------C---------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-ecc-----CCCCcc---------------------------------------
Confidence 36899999999999999999999865 222 122100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+......+.+ +...+.+|||||....... . ..+.+...|+. ++++++++++..+.+ ..
T Consensus 38 ------~~~~~~~~~~---~~~~l~i~Dt~G~~~~~~~----~---~~~~~~~~~~~~~~~~~~i~v~D~~~~~----~~ 97 (165)
T 2wji_A 38 ------VEKKEGEFEY---NGEKFKVVDLPGVYSLTAN----S---IDEIIARDYIINEKPDLVVNIVDATALE----RN 97 (165)
T ss_dssp ------CCCCEEEEEE---TTEEEEEEECCCCSCSSSS----S---HHHHHHHHHHHHHCCSEEEEEEETTCHH----HH
T ss_pred ------eeeeEEEEEE---CCcEEEEEECCCcccCCCc----c---hhHHHHHHHHhcCCCCEEEEEecCCchh----Hh
Confidence 0011111111 1246899999998765321 1 12356677775 899888776554321 11
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
..+..++...+.|+++|+||+|+.+... +..++.+ .++..|+.+++.++.++++++..+
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~SA~~~~~v~~l~~~l 159 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK----ILGVKVVPLSAAKKMGIEELKKAI 159 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHH----HHTSCEEECBGGGTBSHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHH----HhCCCEEEEEcCCCCCHHHHHHHH
Confidence 2233333334789999999999864321 2222221 223567777777777776655544
No 97
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.40 E-value=1.1e-13 Score=139.88 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=95.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+++|++|||||||+|+|+|..+ +.+.-..+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~-------------------------------------------- 36 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGV-------------------------------------------- 36 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTS--------------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCe--------------------------------------------
Confidence 468999999999999999999999875 33321111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh--cCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI--EKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~v~~a~~d~~~~~ 190 (609)
++...... +.. +...+.+|||||+...... ... ..++..|+ .++|++|++++..+. ..
T Consensus 37 ------t~~~~~~~--~~~-~~~~~~l~DtpG~~~~~~~----~~~---~~~~~~~~~~~~~d~vi~v~D~~~~----~~ 96 (271)
T 3k53_A 37 ------TVEKKEGI--MEY-REKEFLVVDLPGIYSLTAH----SID---ELIARNFILDGNADVIVDIVDSTCL----MR 96 (271)
T ss_dssp ------SCEEEEEE--EEE-TTEEEEEEECCCCSCCCSS----CHH---HHHHHHHHHTTCCSEEEEEEEGGGH----HH
T ss_pred ------EEEeeEEE--EEE-CCceEEEEeCCCccccccC----CHH---HHHHHHhhhccCCcEEEEEecCCcc----hh
Confidence 00000111 111 2235899999998865432 111 33566777 689999887765442 23
Q ss_pred HHHHHHHhCCCC-CceEEEecccCcCCCC---CcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRG-DRTFGVLTKIDLMDKG---TDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~-~rti~VltK~D~~~~~---~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
.+.+..++...+ .|+++|+||+|+.+.. .+...+ ...++.+++.+++.++.++++++..+...
T Consensus 97 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l----~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 97 NLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKM----RKELGVPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHH----HHHHSSCEEECBGGGTBTHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHH----HHHcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 333444444445 8999999999986422 122222 12345667777777777777766655443
No 98
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.40 E-value=1.1e-12 Score=124.60 Aligned_cols=150 Identities=16% Similarity=0.206 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|+|.+|||||||+|+|++..+ +..... |-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~-t~-------------------------------------------- 55 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQF-NEDMIP-TV-------------------------------------------- 55 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCC-CC--------------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCC-CCccCC-CC--------------------------------------------
Confidence 46899999999999999999998775 211111 10
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
++.. .. +. .....+.||||||..+. ..+...|++++|++|+|++..+.+ .......
T Consensus 56 -----~~~~--~~--~~-~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~~~ 111 (188)
T 1zd9_A 56 -----GFNM--RK--IT-KGNVTIKLWDIGGQPRF-------------RSMWERYCRGVSAIVYMVDAADQE-KIEASKN 111 (188)
T ss_dssp -----SEEE--EE--EE-ETTEEEEEEEECCSHHH-------------HTTHHHHHTTCSEEEEEEETTCGG-GHHHHHH
T ss_pred -----ceeE--EE--EE-eCCEEEEEEECCCCHhH-------------HHHHHHHHccCCEEEEEEECCCHH-HHHHHHH
Confidence 0000 00 11 12347889999996542 456778999999998877554322 2222222
Q ss_pred HHHHh----CCCCCceEEEecccCcCCCCCcHHHHHhccc----cccCCceeeEeeCChhhhcccccHH
Q 007296 194 ISREV----DPRGDRTFGVLTKIDLMDKGTDAVDILEGKS----YKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 194 l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
....+ ...+.|+++|+||+|+.+... ..++..... ......|+.+++.++.++++++..+
T Consensus 112 ~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l 179 (188)
T 1zd9_A 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGALD-EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179 (188)
T ss_dssp HHHHHHTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHhCcccCCCCEEEEEECCCCccCCC-HHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHH
Confidence 22222 235789999999999976432 222222111 1122345666666666666655444
No 99
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.40 E-value=3.3e-13 Score=131.68 Aligned_cols=157 Identities=20% Similarity=0.266 Sum_probs=96.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-+|+|||+++||||||++++++..| +... .||.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f-~~~~-----~~Ti----------------------------------------- 46 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSF-DNTY-----QATI----------------------------------------- 46 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-C-----------------------------------------------------
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCC-CCCc-----CCcc-----------------------------------------
Confidence 4899999999999999999998776 2221 1110
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--ccchHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--LATSDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~~~~~~l 192 (609)
++......+.+ ......+.||||||..+. ..+...|+++++++|++.+..+.. .....|+
T Consensus 47 ----g~d~~~k~~~~-~~~~v~l~iwDtaGqe~~-------------~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~ 108 (216)
T 4dkx_A 47 ----GIDFLSKTMYL-EDRTIRLQLWDTAGLERF-------------RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWI 108 (216)
T ss_dssp -------CEEEEEEC-SSCEEEEEEECCSCTTTC-------------GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred ----ceEEEEEEEEe-cceEEEEEEEECCCchhh-------------hhHHHHHhccccEEEEEeecchhHHHHHHHHHH
Confidence 00000011111 122346789999997764 556788999999998876544322 1123455
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
..++...+.+.|+|+|.||+|+.+...-..+.........+..|+.+++.++.++++.+..+.+
T Consensus 109 ~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~ 172 (216)
T 4dkx_A 109 DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 172 (216)
T ss_dssp HHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHH
Confidence 5555555567899999999999765421111111112234567888888888888776655443
No 100
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.40 E-value=3.1e-13 Score=129.56 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
....+|+|+|++|||||||++++++..+ +.....++......
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~------------------------------------- 59 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSA------------------------------------- 59 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEE-------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEE-------------------------------------
Confidence 4578999999999999999999999874 32222222111000
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-cc--
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-AT-- 188 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~~-- 188 (609)
.+.+ ......+.||||||..+.. .+...|++++|++|+|++..+... ..
T Consensus 60 --------------~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 111 (201)
T 2q3h_A 60 --------------VVSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNVS 111 (201)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHHH
Confidence 0111 1112357799999986542 234568899999988775543221 11
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
..++..+....+ +.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 112 EKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 123334444444 6899999999999753
No 101
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=6.4e-13 Score=126.21 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=94.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|+++||||||+|+|++..+.+......+ ..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~-~~----------------------------------------- 51 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG-VD----------------------------------------- 51 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCS-EE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccc-eE-----------------------------------------
Confidence 346999999999999999999999876222111110 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.....+.+ ......+.||||||.... ..+...|++.+|++|+|++..+. .......
T Consensus 52 ---------~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~ 107 (195)
T 1x3s_A 52 ---------FKVKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYDVTRR-DTFVKLD 107 (195)
T ss_dssp ---------EEEEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEETTCH-HHHHTHH
T ss_pred ---------EEEEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECcCH-HHHHHHH
Confidence 00001111 111246889999997653 23466889999999887654332 1111111
Q ss_pred HHHHHhC----CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHH
Q 007296 193 KISREVD----PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRRE 260 (609)
Q Consensus 193 ~l~~~~d----~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 260 (609)
.+...+. ..+.++++|+||+|+.+......+... .....+..|+.+++.++.++++++..+.....+
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLK-FARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHH-HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHH-HHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 2233332 246889999999999644322211111 112234557777777778888777666554443
No 102
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=6.7e-13 Score=126.82 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=91.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..+.+.. ..++... ..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~t~~~~--~~------------------------------------- 66 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DPTLEST--YR------------------------------------- 66 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CTTCCEE--EE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-CCCCCce--EE-------------------------------------
Confidence 4579999999999999999999998762211 1111000 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~ 190 (609)
..+.+ ......+.||||||... ..+...|++.++++|+|++..+.+ + ....
T Consensus 67 ------------~~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 119 (196)
T 2atv_A 67 ------------HQATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLP 119 (196)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHHH
Confidence 00011 11124678999999764 245678889999998877654321 1 1122
Q ss_pred HHHHHHH-hCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChh-hhcccccHHHH
Q 007296 191 AIKISRE-VDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQA-DINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~-~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~-~i~~~~~~~~~ 256 (609)
++..+.. ....+.|+++|+||+|+.+......+.........+..|+.+++.++. ++++.+..+..
T Consensus 120 ~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 120 LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 187 (196)
T ss_dssp HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHH
Confidence 3333333 344578999999999997643211111111111224566777776666 66665554443
No 103
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.39 E-value=8e-14 Score=145.24 Aligned_cols=164 Identities=19% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+|.|++||.+|||||||||+|++..+...+...+|..|+.-.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~-------------------------------------- 199 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGM-------------------------------------- 199 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEE--------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEE--------------------------------------
Confidence 689999999999999999999987642222222333331111
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCC---Ccccc--
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPAN---QDLAT-- 188 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~---~d~~~-- 188 (609)
+..++...++|+||||+...+..+ ..+. ....++++.++++|++++.++ .+...
T Consensus 200 ---------------v~~~~~~~~~l~DtPG~i~~a~~~--~~l~----~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~ 258 (342)
T 1lnz_A 200 ---------------VETDDGRSFVMADLPGLIEGAHQG--VGLG----HQFLRHIERTRVIVHVIDMSGLEGRDPYDDY 258 (342)
T ss_dssp ---------------EECSSSCEEEEEEHHHHHHHTTCT--TTTH----HHHHHHHHHCCEEEEEEESSCSSCCCHHHHH
T ss_pred ---------------EEeCCCceEEEecCCCCccccccc--chhH----HHHHHHHHhccEEEEEEECCcccccChHHHH
Confidence 222233578999999987643221 1121 112344567999988776654 22111
Q ss_pred hHHHHHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 189 SDAIKISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 189 ~~~l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..+...+..+.+ ...|+++|+||+|+.+......++.+. ......++.+++.+..++++++..+....
T Consensus 259 ~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~--l~~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 259 LTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEK--LTDDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHH--CCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHH--hhcCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 123334444443 468999999999997543222222211 11114677778887788877776655443
No 104
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.39 E-value=1.1e-12 Score=123.81 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|++|||||||+|++++... ..... |.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~-t~------------------------------------------- 50 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTISP-TL------------------------------------------- 50 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCCC-CS-------------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Ccccc-cC-------------------------------------------
Confidence 467999999999999999999998762 21111 10
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
++... .+.+ +...+.+|||||..+. ..+...|++++|++|+|++..+. .......
T Consensus 51 ------~~~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~ 105 (186)
T 1ksh_A 51 ------GFNIK--TLEH---RGFKLNIWDVGGQKSL-------------RSYWRNYFESTDGLIWVVDSADR-QRMQDCQ 105 (186)
T ss_dssp ------SEEEE--EEEE---TTEEEEEEEECCSHHH-------------HTTGGGGCTTCSEEEEEEETTCG-GGHHHHH
T ss_pred ------ccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEECcCH-HHHHHHH
Confidence 01101 1111 2357899999997542 44567889999999887754432 2222222
Q ss_pred HHHHH----hCCCCCceEEEecccCcCCCCCcHHHHHhccc----cccCCceeeEeeCChhhhcccccHHHHHHHH
Q 007296 193 KISRE----VDPRGDRTFGVLTKIDLMDKGTDAVDILEGKS----YKLRYPWIGVVNRSQADINKSVDMIAARRRE 260 (609)
Q Consensus 193 ~l~~~----~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 260 (609)
..... ....+.|+++|+||+|+.+... ..++.+... ......|+.+++.++.++++++..+.....+
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 106 RELQSLLVEERLAGATLLIFANKQDLPGALS-CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhChhcCCCcEEEEEeCccCCCCCC-HHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 22222 2234689999999999976532 222221111 1223456677777777777777666554443
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.38 E-value=7.9e-13 Score=124.36 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|++|||||||+|++++..+.+.. |
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-------~----------------------------------------- 48 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK-------P----------------------------------------- 48 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-------S-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC-------C-----------------------------------------
Confidence 4679999999999999999999987651100 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.++... .+.+ +...+.+|||||..+.. .+...|++++|++|++++..+. .......
T Consensus 49 ----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~ 105 (183)
T 1moz_A 49 ----TIGFNVE--TLSY---KNLKLNVWDLGGQTSIR-------------PYWRCYYADTAAVIFVVDSTDK-DRMSTAS 105 (183)
T ss_dssp ----STTCCEE--EEEE---TTEEEEEEEEC----CC-------------TTGGGTTTTEEEEEEEEETTCT-TTHHHHH
T ss_pred ----cCccceE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhccCCEEEEEEECCCH-HHHHHHH
Confidence 1111111 1111 23578999999986532 2345788999999887654332 2222222
Q ss_pred HHHHHhC----CCCCceEEEecccCcCCCCC--cHHHHHhcc-ccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREVD----PRGDRTFGVLTKIDLMDKGT--DAVDILEGK-SYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~d----~~~~rti~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
.....+. ..+.|+++|+||+|+.+... +..+.+... .......|+.+++.++.++++++..+....
T Consensus 106 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 106 KELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp HHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred HHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 2333322 45789999999999976432 122222111 011223566777777777776666554443
No 106
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.38 E-value=7.5e-13 Score=141.56 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=99.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..+.|+|+|..|+|||||+|+|+|.++.+ +++.|.+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~-----~~~~~gt--------------------------------------- 68 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSI-----VSDYAGT--------------------------------------- 68 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC--------------------------------------------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCc-----cCCCCCe---------------------------------------
Confidence 57899999999999999999999987622 2222211
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.+.....+...+...+.||||||+......++. . ...+..|+.++|++|++++ ++.......++
T Consensus 69 --------T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~-~-----~~~~~~~l~~aD~vllVvD-~~~~~~~~~~l 133 (423)
T 3qq5_A 69 --------TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL-R-----VEKARRVFYRADCGILVTD-SAPTPYEDDVV 133 (423)
T ss_dssp ---------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC-C-----HHHHHHHHTSCSEEEEECS-SSCCHHHHHHH
T ss_pred --------eeeeEEEEEEECCCCeEEEEECcCCCcccchhHH-H-----HHHHHHHHhcCCEEEEEEe-CCChHHHHHHH
Confidence 0111111122223337899999999875432111 1 2335678999999988764 43222223344
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
..+++ .+.|+|+|+||+|+.+.... +..+......+..|+.+++.++.++++++..+....
T Consensus 134 ~~l~~---~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 134 NLFKE---MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp HHHHH---TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred HHHHh---cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44444 47899999999999876543 222222334456788888888888888877766554
No 107
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.38 E-value=2e-13 Score=129.50 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=89.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|++|||||||+|++++..+ +. ..|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~------~~~----------------------------------------- 52 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-VT------TVP----------------------------------------- 52 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-EE------ECS-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CC------cCC-----------------------------------------
Confidence 467999999999999999999988765 11 011
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.++... .+.+ +...+.+|||||..+... +...|++++|++|+|++..+.. ......
T Consensus 53 ----t~~~~~~--~~~~---~~~~~~~~Dt~G~~~~~~-------------~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 109 (189)
T 2x77_A 53 ----TVGVNLE--TLQY---KNISFEVWDLGGQTGVRP-------------YWRCYFSDTDAVIYVVDSTDRD-RMGVAK 109 (189)
T ss_dssp ----STTCCEE--EEEE---TTEEEEEEEECCSSSSCC-------------CCSSSSTTCCEEEEEEETTCCT-THHHHH
T ss_pred ----CCceEEE--EEEE---CCEEEEEEECCCCHhHHH-------------HHHHHhhcCCEEEEEEeCCCHH-HHHHHH
Confidence 0011111 1111 235789999999765422 2446788999998877554322 122222
Q ss_pred HHH----HHhCCCCCceEEEecccCcCCCCCcHHHHHhcc----ccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 193 KIS----REVDPRGDRTFGVLTKIDLMDKGTDAVDILEGK----SYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 193 ~l~----~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~----~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
... ......+.|+++|+||+|+.+... ..++.... .......|+.+++.++.++++.+..+...
T Consensus 110 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 110 HELYALLDEDELRKSLLLIFANKQDLPDAAS-EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVER 181 (189)
T ss_dssp HHHHHHHTCSTTTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcCCCeEEEEEECCCCcCCCC-HHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHH
Confidence 222 222235789999999999976532 22222111 11122345666666667776666555443
No 108
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=1.1e-12 Score=125.25 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|.+|||||||+|+|++..+ +.... .| .+....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~-~t-~~~~~~------------------------------------- 46 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RDTYI-PT-IEDTYR------------------------------------- 46 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC-CCTTS-CC-CCEEEE-------------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC-CCccc-Cc-ccccee-------------------------------------
Confidence 457999999999999999999998765 21111 11 010000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~ 190 (609)
. .+ ........+.||||||.... ..+...|++.+|++|++++..+.. +. ...
T Consensus 47 ----------~--~~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (199)
T 2gf0_A 47 ----------Q--VI-SCDKSVCTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVFSVTSKQSLEELGP 100 (199)
T ss_dssp ----------E--EE-EETTEEEEEEEEECCGGGSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHH
T ss_pred ----------E--EE-EECCEEEEEEEEeCCChHHh-------------HHHHHHhhccCCEEEEEEECcCHHHHHHHHH
Confidence 0 00 01111236889999996543 466778899999998877654321 11 122
Q ss_pred HHHHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 191 AIKISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 191 ~l~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
++..+..+.. .+.|+++|+||+|+.+......+. .......+..|+.+++.++.++++++..+.
T Consensus 101 ~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 101 IYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREA-QAVAQEWKCAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp HHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHH-HHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHH-HHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Confidence 3333444332 357999999999998643222111 111122345677777777777776665444
No 109
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=124.96 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=92.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|||++|||||||+++++|..+ +......|-..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~----------------------------------------- 59 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPED----------------------------------------- 59 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTT-----------------------------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccc-----------------------------------------
Confidence 567999999999999999999988653 11110001000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-c-cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-L-ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~-~~~~ 190 (609)
+. ...+.+ ......+.+|||||..... ..+...|++.++++|+|++..+.. + ....
T Consensus 60 -------~~--~~~~~~-~~~~~~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 117 (195)
T 3cbq_A 60 -------TY--ERRIMV-DKEEVTLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117 (195)
T ss_dssp -------EE--EEEEEE-TTEEEEEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -------eE--EEEEEE-CCEEEEEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHH
Confidence 00 001111 1112357799999976421 235667889999998877554321 1 1123
Q ss_pred HHHHHHHhCC-CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 191 AIKISREVDP-RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d~-~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
++..+....+ .+.|+|+|.||+|+.+......+.........+..|+.+++.++.++++.+..+..
T Consensus 118 ~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 118 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184 (195)
T ss_dssp HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHH
Confidence 4333333332 47899999999999764321111111111123456888888888887776665544
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.37 E-value=4e-13 Score=126.52 Aligned_cols=118 Identities=20% Similarity=0.191 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|.+|||||||++++++..+ +.....++.....
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 43 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYS--------------------------------------- 43 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEE---------------------------------------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeE---------------------------------------
Confidence 346899999999999999999998765 2221111111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccch--
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LATS-- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~~-- 189 (609)
..+.+ ......+.+|||||.... ..+...|++.+|++|+|++..+.. +...
T Consensus 44 ------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 44 ------------ANVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRA 97 (186)
T ss_dssp ------------EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence 00111 111235779999998654 234556889999998877554321 1111
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 98 KWYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp THHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEeEccccccc
Confidence 24444555444 7899999999999764
No 111
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.37 E-value=3.5e-13 Score=128.16 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=64.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-c----hHHHHHHHHh--CCCCCceEE
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-T----SDAIKISREV--DPRGDRTFG 207 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-~----~~~l~l~~~~--d~~~~rti~ 207 (609)
..+.||||||.... ..+...|++++|++|+|++....... + .....+..++ ...+.|+++
T Consensus 74 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 74 TRFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred eEEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 36889999997653 45677899999999887755421000 1 1111233333 335789999
Q ss_pred EecccCcCCCCC--cHHHHHhccccccCC-ceeeEeeCChhhhcccccHHHH
Q 007296 208 VLTKIDLMDKGT--DAVDILEGKSYKLRY-PWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 208 VltK~D~~~~~~--~~~~~l~~~~~~l~~-g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
|+||+|+.+... +..+.+ ...+. .|+.+++.++.++++.+..+..
T Consensus 141 v~NK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 188 (198)
T 3t1o_A 141 QVNKRDLPDALPVEMVRAVV----DPEGKFPVLEAVATEGKGVFETLKEVSR 188 (198)
T ss_dssp EEECTTSTTCCCHHHHHHHH----CTTCCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred EEEchhcccccCHHHHHHHH----HhcCCceEEEEecCCCcCHHHHHHHHHH
Confidence 999999976532 122222 22334 6677777666777666655443
No 112
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.37 E-value=1.1e-12 Score=123.60 Aligned_cols=150 Identities=11% Similarity=0.152 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
....+|+|+|.+|||||||+|+|++..+ .. ..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~----~~------------------------------------------- 50 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VH----TS------------------------------------------- 50 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EE----EE-------------------------------------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-Cc----cC-------------------------------------------
Confidence 3567999999999999999999999875 10 00
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.+.++... .+.+ +...+.+|||||..+. ..+...|++++|++|+|++..+. ......
T Consensus 51 ----~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~-~s~~~~ 107 (181)
T 2h17_A 51 ----PTIGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDR-ERISVT 107 (181)
T ss_dssp ----CCSSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCT-TTHHHH
T ss_pred ----CcCceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 01111111 1222 2357899999998653 23456789999999887755432 222222
Q ss_pred HHHHHHh-C---CCCCceEEEecccCcCCCCC--cHHHHHhcc-ccccCCceeeEeeCChhhhccccc
Q 007296 192 IKISREV-D---PRGDRTFGVLTKIDLMDKGT--DAVDILEGK-SYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 192 l~l~~~~-d---~~~~rti~VltK~D~~~~~~--~~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
......+ . ..+.++++|+||+|+.+... +..+.+... ....+..|+.+++.++.++++++.
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 175 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLE 175 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 2222222 2 35789999999999976432 122222111 111223566666666666665444
No 113
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.37 E-value=1.7e-12 Score=125.69 Aligned_cols=119 Identities=15% Similarity=0.197 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|++|||||||++++++..+ +.... .|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~-~~~~~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQT-SITDS----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCC-CCSCE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccC-Cccee-----------------------------------------
Confidence 468999999999999999999998875 22211 11000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHH-HHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIEN-MVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~-~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
...+.+.+.....+.||||||..+. .. +...|+++++++|+|++..+..-.....
T Consensus 43 -----------~~~~~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 98 (214)
T 2fh5_B 43 -----------SAIYKVNNNRGNSLTLIDLPGHESL-------------RFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98 (214)
T ss_dssp -----------EEEEECSSTTCCEEEEEECCCCHHH-------------HHHHHHHHGGGEEEEEEEEETTTHHHHHHHH
T ss_pred -----------eEEEEecCCCccEEEEEECCCChhH-------------HHHHHHHHHhhCCEEEEEEECCCcCHHHHHH
Confidence 0011122211357899999997542 33 6788999999998877654311111112
Q ss_pred HH----HHHH--hCCCCCceEEEecccCcCCCC
Q 007296 192 IK----ISRE--VDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 192 l~----l~~~--~d~~~~rti~VltK~D~~~~~ 218 (609)
.. +... ....+.|+++|+||+|+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 99 AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 12 2221 234568999999999998654
No 114
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.37 E-value=2.1e-12 Score=123.49 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=93.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
....+|+|+|+.|||||||++++.|. +.+. . |
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~-~---~------------------------------------------- 49 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPN-E---T------------------------------------------- 49 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGG-G---G-------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCc-c---e-------------------------------------------
Confidence 36789999999999999999999986 3221 0 0
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHH---HHhhcCCceEEEEEecCCCc-cc
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMV---RSYIEKPNCIILAISPANQD-LA 187 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v---~~yi~~~~~iIL~v~~a~~d-~~ 187 (609)
.+..+....+...+.+.....+.||||||..+... +. ..|+++++++|+|++..+.- -.
T Consensus 50 ----~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 112 (196)
T 3llu_A 50 ----LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD-------------PTFDYEMIFRGTGALIYVIDAQDDYMEA 112 (196)
T ss_dssp ----GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC-------------TTCCHHHHHHTCSEEEEEEETTSCCHHH
T ss_pred ----eeeccccceeeeeccCCCeeEEEEEECCCCHHHHh-------------hhhhcccccccCCEEEEEEECCCchHHH
Confidence 01112223333334444556899999999765321 22 67889999998877654420 11
Q ss_pred chHHHHHHHHh--CCCCCceEEEecccCcCCCCCc------H-----HHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 188 TSDAIKISREV--DPRGDRTFGVLTKIDLMDKGTD------A-----VDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 188 ~~~~l~l~~~~--d~~~~rti~VltK~D~~~~~~~------~-----~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
...+..+...+ ...+.++++|+||+|+.+.... . .++........+..|+.+++.+ .++++.+..+
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 12222344433 2347899999999999763210 0 1111111113445677888777 7776655433
No 115
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.36 E-value=2e-12 Score=122.11 Aligned_cols=151 Identities=17% Similarity=0.260 Sum_probs=90.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+++|++|||||||++++++..+ + .. .|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~----~~--~~----------------------------------------- 46 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-S----HI--TP----------------------------------------- 46 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-E----EE--EE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-C----cc--cC-----------------------------------------
Confidence 578999999999999999999999754 1 00 01
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.++... .+.+ +...+.+|||||.... ..+...|++++|++|++++..+.. ......
T Consensus 47 ----t~g~~~~--~~~~---~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~ 103 (181)
T 1fzq_A 47 ----TQGFNIK--SVQS---QGFKLNVWDIGGQRKI-------------RPYWRSYFENTDILIYVIDSADRK-RFEETG 103 (181)
T ss_dssp ----ETTEEEE--EEEE---TTEEEEEEECSSCGGG-------------HHHHHHHHTTCSEEEEEEETTCGG-GHHHHH
T ss_pred ----cCCeEEE--EEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECcCHH-HHHHHH
Confidence 0011101 1111 1357889999997543 566788999999999877554322 112221
Q ss_pred HHHHH----hCCCCCceEEEecccCcCCCCCcHHHHHhc--c--ccccCCceeeEeeCChhhhcccccHHH
Q 007296 193 KISRE----VDPRGDRTFGVLTKIDLMDKGTDAVDILEG--K--SYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 193 ~l~~~----~d~~~~rti~VltK~D~~~~~~~~~~~l~~--~--~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..... ....+.|+++|+||+|+.+... ..++.+. . .......|+.+++.++.++++.+..+.
T Consensus 104 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 173 (181)
T 1fzq_A 104 QELTELLEEEKLSCVPVLIFANKQDLLTAAP-ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVC 173 (181)
T ss_dssp HHHHHHTTCGGGTTCCEEEEEECTTSTTCCC-HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCEEEEEECcCcccCCC-HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHH
Confidence 22222 2235689999999999976542 2222111 1 111223566677777777776655443
No 116
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.36 E-value=3.8e-13 Score=131.55 Aligned_cols=157 Identities=12% Similarity=0.130 Sum_probs=86.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+++|++..+.+......+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~-------------------------------------------- 47 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG-------------------------------------------- 47 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------C--------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--------------------------------------------
Confidence 467999999999999999999999876211110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--- 189 (609)
..+. ...+.+ ......+.||||||..+. ..+...|++.++++|+|++..+ .....
T Consensus 48 -----~~~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~D~~~-~~s~~~~~ 105 (223)
T 3cpj_B 48 -----VEFA--TRTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVYDISK-SSSYENCN 105 (223)
T ss_dssp -----CSEE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEEC-CC-HHHHHHHH
T ss_pred -----ceeE--EEEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEEeCCC-HHHHHHHH
Confidence 0000 011111 111246889999997653 2235678899999988765433 22212
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
.++..+......+.|+++|+||+|+.+......+.........+..|+.+++.++.++++++..+.
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 234444555556789999999999975432111111111112234566666666666665554443
No 117
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.34 E-value=4.9e-13 Score=128.44 Aligned_cols=116 Identities=18% Similarity=0.208 Sum_probs=72.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|++|||||||++++++..+ +.....++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------- 61 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFEN------------------------------------------- 61 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCC-------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccce-------------------------------------------
Confidence 4899999999999999999999875 32211111000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 191 (609)
+. ..+.+ ......+.||||||.... ..+...|++++|++|+|++..+.. +.. ..+
T Consensus 62 -----~~---~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (201)
T 2gco_A 62 -----YI---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 119 (201)
T ss_dssp -----CE---EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTH
T ss_pred -----EE---EEEEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 01111 111236889999996543 233456889999998876543321 111 224
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...++...+ +.|+++|+||+|+.+.
T Consensus 120 ~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 120 TPEVKHFCP-NVPIILVGNKKDLRQD 144 (201)
T ss_dssp HHHHHHHST-TCCEEEEEECGGGTTC
T ss_pred HHHHHHhCC-CCCEEEEEecHHhhcC
Confidence 444454443 6899999999999864
No 118
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.34 E-value=5.3e-14 Score=134.96 Aligned_cols=152 Identities=15% Similarity=0.203 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|.+|||||||+|+|++..+........|.-.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 70 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF----------------------------------------- 70 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceE-----------------------------------------
Confidence 457999999999999999999999875211111111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~ 190 (609)
....+.+ ......+.||||||..... .+...|++.+|++|+|++..+... ....
T Consensus 71 ----------~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 126 (199)
T 3l0i_B 71 ----------KIRTIEL-DGKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVYDVTDQESFNNVKQ 126 (199)
T ss_dssp ----------EEEEEEE-TTEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC-CCCSHHHHHHHH
T ss_pred ----------EEEEEEE-CCEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 0001111 1112368899999966542 224468899999988765443211 1123
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC----cHHHHHhccccccCCceeeEeeCChhhhcccccH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT----DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDM 253 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~----~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~ 253 (609)
++..+....+.+.++++|+||+|+.+... +...+. ...+..|+.+++.++.++++++..
T Consensus 127 ~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 127 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFA----DSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp HHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHH----HTTTCCBCCCCC---HHHHHHHHH
T ss_pred HHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHH----HHcCCeEEEEECCCCCCHHHHHHH
Confidence 34444555555789999999999975432 122222 223456777777777777665543
No 119
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.34 E-value=9.8e-13 Score=124.90 Aligned_cols=157 Identities=12% Similarity=0.123 Sum_probs=88.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..| +.....++.....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 59 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYS--------------------------------------- 59 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE---------------------------------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceee---------------------------------------
Confidence 345899999999999999999998875 3222111111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~ 190 (609)
..+.+ ......+.||||||..... .+ ..|++.++++|+|++..+.. +. ...
T Consensus 60 ------------~~~~~-~~~~~~l~i~Dt~G~~~~~-------------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~ 112 (187)
T 3c5c_A 60 ------------SEETV-DHQPVHLRVMDTADLDTPR-------------NC-ERYLNWAHAFLVVYSVDSRQSFDSSSS 112 (187)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC---CC-------------CT-HHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCCcch-------------hH-HHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 00111 1122467899999976531 11 36889999998876554321 11 112
Q ss_pred HHHHHHHhC---CCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEee-CChhhhcccccHHHH
Q 007296 191 AIKISREVD---PRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVN-RSQADINKSVDMIAA 256 (609)
Q Consensus 191 ~l~l~~~~d---~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~-~s~~~i~~~~~~~~~ 256 (609)
++..+.... ..+.++++|+||+|+.+......+........++..|+.+++ .++.++++.+..+..
T Consensus 113 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 113 YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHH
Confidence 333232221 246899999999999754321111111111223456777887 777777776655443
No 120
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.34 E-value=4.7e-13 Score=127.57 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||+|++++..+ +.....++......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 62 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSH-------------------------------------- 62 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEE--------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEE--------------------------------------
Confidence 356999999999999999999999875 32221111111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-c--h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-T--S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-~--~ 189 (609)
.+.+ ......+.||||||.... ..+...|++++|++|+|++..+..-. . .
T Consensus 63 -------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 115 (194)
T 3reg_A 63 -------------VMKY-KNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNNRTSFDNIST 115 (194)
T ss_dssp -------------EEEE-TTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCCHHHHHHHHH
Confidence 0001 111235789999996543 33456789999999887755432111 1 2
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhccccccCCc-eeeEeeCChhhhcccccHHHH
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKLRYP-WIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g-~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++..++... .+.|+++|+||+|+.+... ...+.........+.. |+.+++.++.++++.+..+..
T Consensus 116 ~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 184 (194)
T 3reg_A 116 KWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184 (194)
T ss_dssp THHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHH
Confidence 2334444443 3589999999999986421 1111111111223333 777777777777766655443
No 121
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=2.9e-13 Score=130.66 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=71.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+|+|++|||||||+|+|++..+ +.....++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------- 61 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFEN------------------------------------------- 61 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-C-------CCE-------------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccce-------------------------------------------
Confidence 5899999999999999999999875 22111111000
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SDA 191 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~~ 191 (609)
+. ..+.+ ......+.||||||.... ..+...|++++|++|+|++..+.. +.. ..+
T Consensus 62 -----~~---~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 119 (207)
T 2fv8_A 62 -----YV---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW 119 (207)
T ss_dssp -----EE---EEEEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTH
T ss_pred -----EE---EEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 00111 111236889999997654 233556889999998876544321 111 223
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
+..++...+ +.|+++|+||+|+.+.
T Consensus 120 ~~~~~~~~~-~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 120 VPEVKHFCP-NVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHST-TCCEEEEEECGGGGGC
T ss_pred HHHHHHhCC-CCCEEEEEEchhhhcc
Confidence 444444433 6899999999999754
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=6.9e-13 Score=125.46 Aligned_cols=156 Identities=21% Similarity=0.273 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-++|+++|++|||||||+++|+|..+.+.....+|.-+
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~----------------------------------------- 44 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEK----------------------------------------- 44 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEE-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccc-----------------------------------------
Confidence 457999999999999999999999765211111111111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~ 190 (609)
.... +.. +...+.+|||||....... .. -+.+...|+. .+++++++++..+ . ..
T Consensus 45 ----------~~~~--~~~-~~~~~~l~Dt~G~~~~~~~----~~---~~~~~~~~~~~~~~~~~i~v~d~~~--~--~~ 100 (188)
T 2wjg_A 45 ----------KEGE--FEY-NGEKFKVVDLPGVYSLTAN----SI---DEIIARDYIINEKPDLVVNIVDATA--L--ER 100 (188)
T ss_dssp ----------EEEE--EEE-TTEEEEEEECCCCSCCSSS----SH---HHHHHHHHHHHHCCSEEEEEEEGGG--H--HH
T ss_pred ----------eEEE--EEe-CCcEEEEEECCCcCccccc----cH---HHHHHHHHHhccCCCEEEEEecchh--H--HH
Confidence 0011 111 1246889999998765321 11 1345566665 5888877665433 1 22
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC---cHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT---DAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~---~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
...+...+...+.|+++|+||+|+..... ...++.+ .++..|+.+++.++.++++++..+...
T Consensus 101 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 166 (188)
T 2wjg_A 101 NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEK----ILGVKVVPLSAAKKMGIEELKKAISIA 166 (188)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHH----HHTSCEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHH----HhCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 22344444446789999999999864321 2222221 223567777777777777666655443
No 123
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.33 E-value=9.1e-13 Score=125.77 Aligned_cols=151 Identities=12% Similarity=0.188 Sum_probs=86.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|++|||||||++++++..+ +. ..|+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~------~~~t---------------------------------------- 60 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT------TIPT---------------------------------------- 60 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE------EEEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc------cCCc----------------------------------------
Confidence 457999999999999999999998775 21 1110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.++... . +.. +...+.+|||||..+. ..+...|++++|++|+|++..+. .......
T Consensus 61 -----~~~~~~--~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~-~s~~~~~ 116 (192)
T 2b6h_A 61 -----IGFNVE--T--VEY-KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDR-ERVQESA 116 (192)
T ss_dssp -----TTEEEE--E--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCG-GGHHHHH
T ss_pred -----CceeEE--E--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHHH
Confidence 000000 1 111 2357899999997653 33466789999999887655432 2222222
Q ss_pred HHHHHh----CCCCCceEEEecccCcCCCCCcHHHHHhccc----cccCCceeeEeeCChhhhcccccHHH
Q 007296 193 KISREV----DPRGDRTFGVLTKIDLMDKGTDAVDILEGKS----YKLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 193 ~l~~~~----d~~~~rti~VltK~D~~~~~~~~~~~l~~~~----~~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
.....+ ...+.|+++|+||+|+.+... ..++..... .....+|+.+++.++.++++++..+.
T Consensus 117 ~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 117 DELQKMLQEDELRDAVLLVFANKQDMPNAMP-VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp HHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHHhcccccCCCeEEEEEECCCCCCCCC-HHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 222222 224689999999999976432 222222111 11223466666666677766555443
No 124
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.33 E-value=1.8e-12 Score=123.36 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=74.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
..+|+|+|++|||||||++++++..+ +.....++.....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 56 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYA---------------------------------------- 56 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeE----------------------------------------
Confidence 45999999999999999999998865 3222211111100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccch--H
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LATS--D 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~~--~ 190 (609)
..+.+ ......+.||||||..+. ..+...|++++|++|+|++..+.. +... .
T Consensus 57 -----------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 111 (194)
T 2atx_A 57 -----------VSVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEE 111 (194)
T ss_dssp -----------EEEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00111 111236789999997654 234567899999998877554322 1111 2
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
++..++...+ +.|+++|+||+|+.+.
T Consensus 112 ~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 112 WVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 4444444443 6899999999999764
No 125
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.32 E-value=1.5e-12 Score=126.60 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
....+|+|+|++|||||||++++++..+ +.....++.....
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~~-------------------------------------- 65 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYT-------------------------------------- 65 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEE--------------------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeEE--------------------------------------
Confidence 4567999999999999999999998875 2221111100000
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c--c
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A--T 188 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~--~ 188 (609)
..+.+ ......+.||||||..+. ..+...|++++|++|+|++..+..- . .
T Consensus 66 -------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 66 -------------ACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 118 (214)
T ss_dssp -------------EEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHH
Confidence 00111 112236789999997654 3345678999999998876544321 1 2
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCCC------------CcHHHHHhccccccCC-ceeeEeeCChhh-hcccccHH
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDKG------------TDAVDILEGKSYKLRY-PWIGVVNRSQAD-INKSVDMI 254 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~~------------~~~~~~l~~~~~~l~~-g~~~v~~~s~~~-i~~~~~~~ 254 (609)
..|+..++...+ +.|+++|+||+|+.+.. ....+.........+. .|+.+++.++.+ +++++..+
T Consensus 119 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l 197 (214)
T 3q3j_B 119 KKWRTEILDYCP-STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197 (214)
T ss_dssp THHHHHHHHHCT-TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHH
Confidence 345555555543 68999999999997531 1001111111122334 566777776666 76666555
Q ss_pred HHH
Q 007296 255 AAR 257 (609)
Q Consensus 255 ~~~ 257 (609)
...
T Consensus 198 ~~~ 200 (214)
T 3q3j_B 198 SML 200 (214)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 126
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=126.00 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=59.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|+|++|||||||+++|++..+ +.....++.....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 72 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYM---------------------------------------- 72 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEE----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEE----------------------------------------
Confidence 45899999999999999999999875 3222111110000
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--hH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--SD 190 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~~ 190 (609)
..+.+. .....+.||||||.... ..+...|+++++++|+|++..+.. +.. ..
T Consensus 73 -----------~~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 127 (214)
T 2j1l_A 73 -----------VNLQVK-GKPVHLHIWDTAGQDDY-------------DRLRPLFYPDASVLLLCFDVTSPNSFDNIFNR 127 (214)
T ss_dssp -----------EEEEET-TEEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHT
T ss_pred -----------EEEEEC-CEEEEEEEEECCCchhh-------------hHHHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 001111 11236889999996543 455677899999998877544321 111 12
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
++..++... .+.|+++|+||+|+.+.
T Consensus 128 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 128 WYPEVNHFC-KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp HHHHHHHHC-SSCCEEEEEECGGGGSC
T ss_pred HHHHHHHhC-CCCCEEEEEEChhhhcc
Confidence 334444443 35899999999999864
No 127
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.31 E-value=7.1e-13 Score=129.24 Aligned_cols=110 Identities=14% Similarity=0.123 Sum_probs=68.2
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--cchHHHHHHHHhCCCCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--ATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..+.||||||.... ..+...|+++++++|+|++..+... ....++..+....+ +.|+++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECT
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECC
Confidence 46889999996543 2335678899999988775543211 11234444444433 68999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHHHH
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARRRE 260 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~~E 260 (609)
|+.+..... .........+..|+.+++.++.++++.+..+.....+
T Consensus 130 Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 130 DIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp TSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred ccccccccH--HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 997644211 1111112234567888888888888877766655443
No 128
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.31 E-value=8.1e-13 Score=127.78 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++++|||||++++++..+ +.....++.....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 47 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFS--------------------------------------- 47 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEE---------------------------------------
Confidence 457899999999999999999998765 3222111111100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~ 189 (609)
..+.+ ......+.||||||..... .+...|++++|++|++++..+.. +.. .
T Consensus 48 ------------~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~ 101 (212)
T 2j0v_A 48 ------------ANVAV-DGQIVNLGLWDTAGQEDYS-------------RLRPLSYRGADIFVLAFSLISKASYENVLK 101 (212)
T ss_dssp ------------EEEEC-SSCEEEEEEECCCCCCCCC-------------C--CGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCcHHHH-------------HHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 01111 1122468899999986542 24556899999998877554321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 102 KWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 34444555444 6899999999999754
No 129
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.30 E-value=3.8e-12 Score=119.16 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=84.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|++|||||||++++++..|-+ . . .|-...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~-~-~t~~~~---------------------------------------- 42 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-L-E-KTESEQ---------------------------------------- 42 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-C-S-SCSSSE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-c-C-CCccee----------------------------------------
Confidence 34689999999999999999999987622 1 1 110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--- 189 (609)
+ ...+.+ ......+.+|||||..+ ..|++++|++|+|++..+.. ...
T Consensus 43 -------~---~~~~~~-~~~~~~l~i~Dt~G~~~------------------~~~~~~~d~~ilv~D~~~~~-s~~~~~ 92 (178)
T 2iwr_A 43 -------Y---KKEMLV-DGQTHLVLIREEAGAPD------------------AKFSGWADAVIFVFSLEDEN-SFQAVS 92 (178)
T ss_dssp -------E---EEEEEE-TTEEEEEEEEECSSSCC------------------HHHHHHCSEEEEEEETTCHH-HHHHHH
T ss_pred -------E---EEEEEE-CCEEEEEEEEECCCCch------------------hHHHHhCCEEEEEEECcCHH-HHHHHH
Confidence 0 001111 11123678999999653 35788899998877554321 111
Q ss_pred HHHHHHHHhC---CCCCceEEEecccCcCCCC---CcHHHHHhcccccc-CCceeeEeeCChhhhcccccHHH
Q 007296 190 DAIKISREVD---PRGDRTFGVLTKIDLMDKG---TDAVDILEGKSYKL-RYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 190 ~~l~l~~~~d---~~~~rti~VltK~D~~~~~---~~~~~~l~~~~~~l-~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
.++..+..+. ..+.|+++|+||+|+.+.. ....+. ....... ...|+.+++.++.++++.+..+.
T Consensus 93 ~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 93 RLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA-RALXADMKRCSYYETXATYGLNVDRVFQEVA 164 (178)
T ss_dssp HHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH-HHHHHHHSSEEEEEEBTTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH-HHHHHhhcCCeEEEEeccccCCHHHHHHHHH
Confidence 2222333332 2468999999999995321 111111 1011111 34677777777777766555443
No 130
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.30 E-value=8.5e-12 Score=118.75 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|++|||||||++++++..+ +. -..|.-+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~-~~--~~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL-AT--LQPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC-CC--CCCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-Cc--cccCCCCC----------------------------------------
Confidence 456999999999999999999998775 11 01111110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.-.+.+ . ...+.+|||||.... +.+...|++++|++|++++..+.. .-....
T Consensus 59 -----------~~~~~~--~-~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 110 (190)
T 1m2o_B 59 -----------SEELAI--G-NIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPE-RFDEAR 110 (190)
T ss_dssp -----------EEEEEE--T-TEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGG-GHHHHH
T ss_pred -----------eEEEEE--C-CEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChH-HHHHHH
Confidence 011111 1 257889999998653 234567889999998877554322 112222
Q ss_pred HHHHH----hCCCCCceEEEecccCcCCCCC--cHHHHHhccc--------cccCCceeeEeeCChhhhccccc
Q 007296 193 KISRE----VDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKS--------YKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 193 ~l~~~----~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~--------~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
..... ....+.|+++|+||+|+.+... +..+.+.... ......|+.+++.++.++++.+.
T Consensus 111 ~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 184 (190)
T 1m2o_B 111 VELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 184 (190)
T ss_dssp HHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHH
T ss_pred HHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHH
Confidence 22222 2235789999999999976322 1222221110 01123466666666666655444
No 131
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.30 E-value=4.4e-12 Score=121.64 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+++|++|||||||++++++..+ +. -..|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t-------------------------------------------- 56 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPT-------------------------------------------- 56 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CC--------------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCC--------------------------------------------
Confidence 457999999999999999999998765 11 0001
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.+.. ...+.+ . ...+.+|||||.... +.+...|++++|++|++++..+.+ ......
T Consensus 57 -----~~~~--~~~~~~--~-~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~-s~~~~~ 112 (198)
T 1f6b_A 57 -----LHPT--SEELTI--A-GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHE-RLLESK 112 (198)
T ss_dssp -----CCCS--CEEEEE--T-TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGG-GHHHHH
T ss_pred -----CCce--eEEEEE--C-CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHH-HHHHHH
Confidence 0111 111122 1 257899999997543 234567899999998877654322 112221
Q ss_pred HHHHHh----CCCCCceEEEecccCcCC
Q 007296 193 KISREV----DPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 193 ~l~~~~----d~~~~rti~VltK~D~~~ 216 (609)
.....+ ...+.|+++|+||+|+.+
T Consensus 113 ~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 113 EELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 222222 335789999999999975
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.30 E-value=7.9e-12 Score=135.07 Aligned_cols=168 Identities=20% Similarity=0.281 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|++||++|||||||+|+|+|..+ ..++..|.+++
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-----~~v~~~~gtT~------------------------------------- 216 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-----ALVSPIPGTTR------------------------------------- 216 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECCCC-----------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-----cccCCCCCCcC-------------------------------------
Confidence 468999999999999999999999875 23344443222
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
... ...+.+. ..++.+|||||+.+..... ++.........+..+++.+++++++++ +......++ .
T Consensus 217 ------d~~--~~~i~~~---g~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vllv~d-~~~~~~~~~-~ 282 (439)
T 1mky_A 217 ------DPV--DDEVFID---GRKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADVVVIVLD-ATQGITRQD-Q 282 (439)
T ss_dssp --------C--CEEEEET---TEEEEESSCSCC------------CCSCCHHHHHHHHHCSEEEEEEE-TTTCCCHHH-H
T ss_pred ------Cce--EEEEEEC---CEEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCEEEEEEe-CCCCCCHHH-H
Confidence 000 0111121 2367899999986432210 000000001123567888998887664 433333333 3
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCc-HHH---HHhccccc-cCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTD-AVD---ILEGKSYK-LRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~-~~~---~l~~~~~~-l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.++..+...+.++++|+||+|+.+.... ..+ .+...... ...+++.+++.++.++++++.....
T Consensus 283 ~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~ 351 (439)
T 1mky_A 283 RMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNL 351 (439)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4555555568999999999999865421 111 11111111 1234566666667777776665543
No 133
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.29 E-value=6.9e-13 Score=124.54 Aligned_cols=118 Identities=25% Similarity=0.305 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|+|||||++++++..+ +... .|+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~-----~~t~~~------------------------------------- 43 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDY-----VPTVFD------------------------------------- 43 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCC-----CCeeee-------------------------------------
Confidence 467999999999999999999998764 2211 111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-cc--h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-AT--S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~~--~ 189 (609)
.+.. .+ .+ ......+.||||||..+. ..+...|++++|++|++++..+... .. .
T Consensus 44 ------~~~~-~~--~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 100 (182)
T 3bwd_D 44 ------NFSA-NV--VV-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSK 100 (182)
T ss_dssp -------CBC-CC--C--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------eEEE-EE--EE-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 0000 00 01 112346789999997653 2345678899999988775543211 11 1
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 101 KWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp THHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 24444555444 6899999999999754
No 134
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.29 E-value=2.1e-12 Score=121.97 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..+ +.... .|.......
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~~~~~------------------------------------- 46 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYTA------------------------------------- 46 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEEEE-------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeEEE-------------------------------------
Confidence 357899999999999999999999875 32211 111110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-cc--h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-AT--S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~~--~ 189 (609)
.+.+ ......+.||||||.... ..+...|+++++++|++++..+... .. .
T Consensus 47 -------------~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (184)
T 1m7b_A 47 -------------SFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLK 99 (184)
T ss_dssp -------------EEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCHHHHHHHHH
Confidence 0111 112236789999997553 2234568899999988775543211 11 1
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
.+...++...+ +.|+++|+||+|+.+
T Consensus 100 ~~~~~i~~~~~-~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 100 KWKGEIQEFCP-NTKMLLVGCKSDLRT 125 (184)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHCC-CCCEEEEEEcchhhc
Confidence 23334444443 689999999999975
No 135
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.29 E-value=1.6e-11 Score=129.05 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=87.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccc-ccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRG-SGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
..+.|+++|.+|||||||+|+|+|..+ ..+ ...+|+.+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~------------------------------------ 208 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQ------------------------------------ 208 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEE------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEE------------------------------------
Confidence 578999999999999999999999864 221 112222221100
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC---cccc
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ---DLAT 188 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~---d~~~ 188 (609)
+.. ....+.+|||||+....... ...+. ...+..+...+|+++++++..+. +...
T Consensus 209 -----------------~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad~illV~D~s~~~~~~~~~ 266 (357)
T 2e87_A 209 -----------------FED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLEE 266 (357)
T ss_dssp -----------------EEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCSEEEEEECTTCTTSSCHHH
T ss_pred -----------------EEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCCEEEEEEeCCccccCCHHH
Confidence 111 13468899999987643221 11111 22334455678988887653332 2222
Q ss_pred -hHHHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 189 -SDAIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 189 -~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
..++..+....+ +.++|+|+||+|+.+... ..+... .......+++.+++.+++|+++++..+
T Consensus 267 ~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~-~~~~~~-~~~~~~~~~~~iSA~~g~gi~~l~~~i 330 (357)
T 2e87_A 267 QIHLFEEVHGEFK-DLPFLVVINKIDVADEEN-IKRLEK-FVKEKGLNPIKISALKGTGIDLVKEEI 330 (357)
T ss_dssp HHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH-HHHHHH-HHHHTTCCCEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCEEEEEECcccCChHH-HHHHHH-HHHhcCCCeEEEeCCCCcCHHHHHHHH
Confidence 223333333333 789999999999975431 111111 011123445555555555555544433
No 136
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.96 E-value=2.6e-13 Score=130.58 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=72.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|+|+|.+|||||||++++++..+ +......+...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~----------------------------------------- 66 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDN----------------------------------------- 66 (204)
Confidence 457899999999999999999998765 21111100000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc--h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT--S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~--~ 189 (609)
+ ...+.+ ......+.||||||..+. ..+...|++++|++|+|++..+.. +.. .
T Consensus 67 -------~---~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~ 122 (204)
T 3th5_A 67 -------Y---SANVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRA 122 (204)
Confidence 0 000001 112246779999997543 456677899999998876543321 111 1
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 123 ~~~~~l~~~~~-~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 123 KWYPEVRHHCP-NTPIILVGTKLDLRDD 149 (204)
Confidence 23333333222 6899999999999764
No 137
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.28 E-value=7.1e-13 Score=127.80 Aligned_cols=119 Identities=20% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+-.+|+|+|.+|||||||++++++..+ +......+......
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 69 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA-------------------------------------- 69 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEE--------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEE--------------------------------------
Confidence 457999999999999999999998765 22211111110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc---h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT---S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~---~ 189 (609)
.+.+ ......+.||||||.... ..+...|++.+|++|+|++..+..... .
T Consensus 70 -------------~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 122 (204)
T 4gzl_A 70 -------------NVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRA 122 (204)
T ss_dssp -------------EEEC-C-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -------------EEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHH
Confidence 0001 111235679999998653 234567899999998877544321111 1
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
.++..++... .+.|+++|+||+|+.+..
T Consensus 123 ~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 123 KWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp THHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 2334444444 468999999999998643
No 138
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.9e-11 Score=116.13 Aligned_cols=119 Identities=21% Similarity=0.311 Sum_probs=71.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..++|+|+|.+|||||||+|+|+|..+.+ ..++..|+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~~~------------------------------------- 86 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLSAA------------------------------------- 86 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCceee-------------------------------------
Confidence 57899999999999999999999987521 11111121000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--- 189 (609)
. .....+.+|||||....... +.......+..++++|+|++.........
T Consensus 87 ------~------------~~~~~~~l~Dt~G~~~~~~~---------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 139 (193)
T 2ged_A 87 ------D------------YDGSGVTLVDFPGHVKLRYK---------LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTA 139 (193)
T ss_dssp ------C------------CCCTTCSEEEETTCCBSSCC---------HHHHHHHHGGGEEEEEEEEETTCCHHHHHHHH
T ss_pred ------e------------ecCCeEEEEECCCCchHHHH---------HHHHHHhhcccCCEEEEEEECCCCchhHHHHH
Confidence 0 03458899999998764321 23334445556899988765541111111
Q ss_pred HHHH-HHHHh---CCCCCceEEEecccCcCCCC
Q 007296 190 DAIK-ISREV---DPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 190 ~~l~-l~~~~---d~~~~rti~VltK~D~~~~~ 218 (609)
.++. +.... .+.+.|+++|+||+|+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 140 EFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 1111 11111 34578999999999998654
No 139
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.27 E-value=4e-12 Score=122.78 Aligned_cols=117 Identities=19% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|++|||||||++++++..+ +.... .|......
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~-~t~~~~~~-------------------------------------- 66 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENYT-------------------------------------- 66 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEEE--------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CccceeEE--------------------------------------
Confidence 346899999999999999999999875 32211 11111000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-cc--h
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-AT--S 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~~--~ 189 (609)
..+.+ ......+.||||||.... ..+...|+++++++|+|++..+... .. .
T Consensus 67 ------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~ 120 (205)
T 1gwn_A 67 ------------ASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLK 120 (205)
T ss_dssp ------------EEEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00111 112236889999997653 2234568899999988775543211 11 2
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~ 216 (609)
.|+..++...+ +.|+++|+||+|+.+
T Consensus 121 ~~~~~i~~~~~-~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 121 KWKGEIQEFCP-NTKMLLVGCKSDLRT 146 (205)
T ss_dssp THHHHHHHHCT-TCEEEEEEECGGGGG
T ss_pred HHHHHHHHHCC-CCCEEEEEechhhcc
Confidence 23334444433 689999999999975
No 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.27 E-value=9.8e-12 Score=117.75 Aligned_cols=152 Identities=11% Similarity=0.099 Sum_probs=88.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.--+|+|+|++|||||||++++++..| +.... .|.- .
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~-~t~~----~------------------------------------- 55 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEES-PEGG----R------------------------------------- 55 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCC-TTCE----E-------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CCcc----e-------------------------------------
Confidence 456999999999999999999998876 22211 1100 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--- 189 (609)
+ ...+.+. .....+.||||||.... . |++.++++|+|++..+. ..-+
T Consensus 56 -------~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~-----~~~~~~~~i~v~d~~~~-~s~~~~~ 105 (184)
T 3ihw_A 56 -------F---KKEIVVD-GQSYLLLIRDEGGPPEL-------------Q-----FAAWVDAVVFVFSLEDE-ISFQTVY 105 (184)
T ss_dssp -------E---EEEEEET-TEEEEEEEEECSSSCCH-------------H-----HHHHCSEEEEEEETTCH-HHHHHHH
T ss_pred -------E---EEEEEEC-CEEEEEEEEECCCChhh-------------h-----eecCCCEEEEEEECcCH-HHHHHHH
Confidence 0 0011111 11235778999997542 1 78889999887655432 1112
Q ss_pred HHHHHHHHhC-CCCCceEEEecccCcCCCCC--cHHHHHhccccccC-CceeeEeeCChhhhcccccHHHHH
Q 007296 190 DAIKISREVD-PRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKLR-YPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 190 ~~l~l~~~~d-~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~-~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
.|+..+.... ..+.++++|.||+|+.+... ...+.........+ ..|+.+++.++.++++.+..+...
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 106 NYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQK 177 (184)
T ss_dssp HHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 2333333222 24679999999999963221 11111111112233 578888888888887776655543
No 141
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.25 E-value=1.6e-11 Score=123.83 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
.-++|+|+|.+|+|||||+|+|+|..+.+.+.. .+|+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--------------------------------------- 78 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--------------------------------------- 78 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE---------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE---------------------------------------
Confidence 467999999999999999999999886433322 1222221
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccch
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATS 189 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~ 189 (609)
...+.. +...++||||||+..... ........+..|+. .+|++++++......+...
T Consensus 79 --------------~~~~~~-~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~ 137 (270)
T 1h65_A 79 --------------MVSRSR-AGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNL 137 (270)
T ss_dssp --------------EEEEEE-TTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHH
T ss_pred --------------EEEEee-CCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHH
Confidence 111211 234689999999876432 11222334445543 6888888754322233322
Q ss_pred --HHHHHHHHhCCCC--CceEEEecccCcCCCC
Q 007296 190 --DAIKISREVDPRG--DRTFGVLTKIDLMDKG 218 (609)
Q Consensus 190 --~~l~l~~~~d~~~--~rti~VltK~D~~~~~ 218 (609)
.+++.+......+ .++++|+||+|+.++.
T Consensus 138 ~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 138 DKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3333333332222 5899999999997643
No 142
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=8.2e-12 Score=121.29 Aligned_cols=162 Identities=13% Similarity=0.098 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|||++|||||||+|+++|... .+++..|+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~-----~~~~~~~~---------------------------------------- 70 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHD-----SMDSDCEV---------------------------------------- 70 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCC-----TTCCC-------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-----CCCCcCCc----------------------------------------
Confidence 457899999999999999999998643 11121120
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~ 190 (609)
.+..+... .+.+. .....+.++||+|.... ...+...|.+.++++|+|++-.+.. +. ...
T Consensus 71 ---~g~d~~~~--~i~~~-~~~~~l~~~Dt~g~~~~------------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~ 132 (211)
T 2g3y_A 71 ---LGEDTYER--TLMVD-GESATIILLDMWENKGE------------NEWLHDHCMQVGDAYLIVYSITDRASFEKASE 132 (211)
T ss_dssp ---CCTTEEEE--EEEET-TEEEEEEEECCTTTTHH------------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHH
T ss_pred ---cceeeEEE--EEEEC-CeeeEEEEeecCCCcch------------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 00000000 11121 11235679999995421 1345566788899998876543321 11 112
Q ss_pred HHHHHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
+...+... ...+.|+|+|.||+|+.+......+.........+..|+.+++.++.++++++..+...
T Consensus 133 ~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~ 200 (211)
T 2g3y_A 133 LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQ 200 (211)
T ss_dssp HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 32223322 23468999999999997532211111110111223467778888888887777655443
No 143
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.25 E-value=1e-11 Score=120.46 Aligned_cols=115 Identities=24% Similarity=0.393 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|+|+|+|++|||||||+++|++..+.+. ..+..|+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~~~------------------------------------- 50 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAA------------------------------------- 50 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEET-------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceEEE-------------------------------------
Confidence 689999999999999999999999875221 1122221111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcC----CceEEEEEecC-CCc-c
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEK----PNCIILAISPA-NQD-L 186 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~----~~~iIL~v~~a-~~d-~ 186 (609)
.+ ....+.+|||||.... ..+...|++. ++++|++++.. +.+ +
T Consensus 51 ------~~------------~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~ 99 (218)
T 1nrj_B 51 ------DY------------DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKL 99 (218)
T ss_dssp ------TG------------GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTTCC
T ss_pred ------Ee------------eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChHHH
Confidence 00 2347899999998653 3345556555 89988877655 211 1
Q ss_pred cc-hHHHH-HHHHh---CCCCCceEEEecccCcCCCC
Q 007296 187 AT-SDAIK-ISREV---DPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 187 ~~-~~~l~-l~~~~---d~~~~rti~VltK~D~~~~~ 218 (609)
.. ..++. +.... .+.+.|+++|+||+|+.+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 100 TTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 11 11221 11111 45678999999999998765
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.23 E-value=1.2e-11 Score=127.21 Aligned_cols=122 Identities=19% Similarity=0.256 Sum_probs=73.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|+++|++|||||||+|++++... ...+..|
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-----~~~~~~~------------------------------------------- 35 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-----AFDTRRL------------------------------------------- 35 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-----TGGGGGC-------------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-----CccccCc-------------------------------------------
Confidence 5899999999999999999998742 1122222
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHH
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI 192 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l 192 (609)
|.+.++... .+.+ .+...+.+|||||..+. .......+...|++++|++|+|++..+..... ..+.
T Consensus 36 ~~Ti~~~~~--~~~~--~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~ 103 (307)
T 3r7w_A 36 GATIDVEHS--HLRF--LGNMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFA 103 (307)
T ss_dssp CCCCSEEEE--EEEE--TTTEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHH
T ss_pred CCccceEEE--EEEe--CCceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHH
Confidence 111111111 1112 22457899999997542 11222456778899999998877654432111 1222
Q ss_pred HHHHHhC--CCCCceEEEecccCcCC
Q 007296 193 KISREVD--PRGDRTFGVLTKIDLMD 216 (609)
Q Consensus 193 ~l~~~~d--~~~~rti~VltK~D~~~ 216 (609)
.....+. ..+.|+++|+||+|+.+
T Consensus 104 ~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 104 KALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHHHHHhCCCCeEEEEEecccccc
Confidence 2232221 23689999999999986
No 145
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.23 E-value=8.2e-12 Score=129.72 Aligned_cols=150 Identities=16% Similarity=0.244 Sum_probs=86.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+|+|.+|||||||+++|++..+ + +..||.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~------~~~pT~------------------------------------------ 197 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-V------TTIPTI------------------------------------------ 197 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-E------EEEEET------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-C------Cccccc------------------------------------------
Confidence 799999999999999999998875 1 111210
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH---HH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD---AI 192 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~---~l 192 (609)
++. ... +.. ....++||||||.... ..+...|++.+|++|+|++..+.+..... +.
T Consensus 198 ---~~~--~~~--~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~ 256 (329)
T 3o47_A 198 ---GFN--VET--VEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 256 (329)
T ss_dssp ---TEE--EEE--EEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHH
T ss_pred ---ceE--EEE--Eec-CcEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCchHHHHHHHHHHH
Confidence 000 001 111 2347899999995443 33467889999999887765432211111 11
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhc--c--ccccCCceeeEeeCChhhhcccccHHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEG--K--SYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~--~--~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
.+.+.....+.|+|+|+||+|+.+... ..++... . .......|+.+++.++.++++++..+..
T Consensus 257 ~~~~~~~~~~~piilV~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 257 RMLAEDELRDAVLLVFANKQDLPNAMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp HHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHhhhccCCCeEEEEEECccCCcccC-HHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence 222222234789999999999986542 2222211 1 1122345667777777777776655543
No 146
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.21 E-value=2.3e-11 Score=134.79 Aligned_cols=166 Identities=10% Similarity=0.124 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|++||.+|||||||+|+++|..| +......+........
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~t~g~~~~~~~------------------------------------ 82 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQTHGLNVVTKQ------------------------------------ 82 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC------------CCCEEEEE------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEec------------------------------------
Confidence 567999999999999999999999875 2211111111100000
Q ss_pred hcCCCCcccCCceEEEEe-cCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHH
Q 007296 113 ETGRSKAISTVPIHLSIF-SPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~-~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
.+....+. +. ......+.+|||||..... .+...|+++++++|+|++. +..-....+
T Consensus 83 -~~~~~~v~-------~~~~~~~~~~~i~Dt~G~e~~~-------------~~~~~~l~~~d~ii~V~D~-s~~~~~~~~ 140 (535)
T 3dpu_A 83 -APNIKGLE-------NDDELKECLFHFWDFGGQEIMH-------------ASHQFFMTRSSVYMLLLDS-RTDSNKHYW 140 (535)
T ss_dssp -GGGSGGGT-------TCSTTTTCEEEEECCCSCCTTT-------------TTCHHHHHSSEEEEEEECG-GGGGGHHHH
T ss_pred -ccccccee-------ecCCCceEEEEEEECCcHHHHH-------------HHHHHHccCCcEEEEEEeC-CCchhHHHH
Confidence 00000000 01 1123468999999955432 2345678899999887654 333334455
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
+..+....+ +.|+|+|+||+|+.+......+.+.......+..++.+++.++.|+++++..+....
T Consensus 141 ~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 141 LRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp HHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred HHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence 656666554 589999999999986543222222222333445688888888899888777665544
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.20 E-value=2.7e-12 Score=140.83 Aligned_cols=155 Identities=13% Similarity=0.197 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|.|+|+|.+++|||||+++|++..+.....+..|.-.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 579999999999999999999998765222111111111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
.... +..++...++||||||..... .+...+++.+|++||++ +++.+... .+.
T Consensus 42 --------~~~~----v~~~~g~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~vILVV-Da~dg~~~-qt~ 94 (537)
T 3izy_P 42 --------GAFL----VSLPSGEKITFLDTPGHAAFS-------------AMRARGTQVTDIVILVV-AADDGVMK-QTV 94 (537)
T ss_dssp --------TSCC----BCSSCSSCCBCEECSSSCCTT-------------TSBBSSSBSBSSCEEEC-BSSSCCCH-HHH
T ss_pred --------eEEE----EEeCCCCEEEEEECCChHHHH-------------HHHHHHHccCCEEEEEE-ECCCCccH-HHH
Confidence 0000 222334579999999976542 23446788899998866 44444333 334
Q ss_pred HHHHHhCCCCCceEEEecccCcCCCCCc-H-HHHHhcccc----ccCCceeeEeeCChhhhcccccHHH
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDKGTD-A-VDILEGKSY----KLRYPWIGVVNRSQADINKSVDMIA 255 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~~~~-~-~~~l~~~~~----~l~~g~~~v~~~s~~~i~~~~~~~~ 255 (609)
..+..+...+.|+|+|+||+|+.+...+ . ..+...... .....|+.+++.++.++++++..+.
T Consensus 95 e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~ 163 (537)
T 3izy_P 95 ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATI 163 (537)
T ss_dssp HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHH
Confidence 4556666678899999999999754321 1 112111111 1122455566666666666555443
No 148
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.20 E-value=6.8e-11 Score=118.69 Aligned_cols=125 Identities=16% Similarity=0.224 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCccccc-ccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSG-IVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
.-.+|+|+|..|+|||||+|+|+|..+.+.+.. .+|..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 77 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMV------------------------------------- 77 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEE-------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEE-------------------------------------
Confidence 467999999999999999999999875222211 112211111
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccch
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATS 189 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~ 189 (609)
.+.. +...++||||||+...... .+.....+..++. .++++++|+......+...
T Consensus 78 ----------------~~~~-~~~~l~liDTpG~~~~~~~------~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~ 134 (262)
T 3def_A 78 ----------------SRTM-GGFTINIIDTPGLVEAGYV------NHQALELIKGFLVNRTIDVLLYVDRLDVYAVDEL 134 (262)
T ss_dssp ----------------EEEE-TTEEEEEEECCCSEETTEE------CHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHH
T ss_pred ----------------EEEE-CCeeEEEEECCCCCCcccc------hHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHH
Confidence 1111 2347899999999765322 2233344455554 5677777643322233322
Q ss_pred --HHHHHHHHhCCCC--CceEEEecccCcCCC
Q 007296 190 --DAIKISREVDPRG--DRTFGVLTKIDLMDK 217 (609)
Q Consensus 190 --~~l~l~~~~d~~~--~rti~VltK~D~~~~ 217 (609)
.+++.++.....+ .++++|+||+|+.+.
T Consensus 135 ~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 135 DKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 3444444432222 489999999999754
No 149
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.18 E-value=7.5e-11 Score=129.46 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=91.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
-.+|+|||.+|||||||+|+|++..+ +. ...|.-+...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~--------------------------------------- 359 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVE--------------------------------------- 359 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEE---------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEE---------------------------------------
Confidence 45899999999999999999999874 11 1112211110
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.+.. ....+.||||||.... ..+...|++++|++|+|++..+. ........
T Consensus 360 --------------~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~~-~s~~~~~~ 410 (497)
T 3lvq_E 360 --------------TVTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADR-DRIDEARQ 410 (497)
T ss_dssp --------------EEES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTCG-GGHHHHHH
T ss_pred --------------EEEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcch-hHHHHHHH
Confidence 0222 2357899999996653 33467899999999887755432 22222222
Q ss_pred ----HHHHhCCCCCceEEEecccCcCCCCCcHHHHHhcccc----ccCCceeeEeeCChhhhcccccHHHH
Q 007296 194 ----ISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSY----KLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 194 ----l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~----~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
+.+.....+.|+|+|+||+|+.+... ..++...... .....|+.+++.++.|+++++..+..
T Consensus 411 ~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 411 ELHRIINDREMRDAIILIFANKQDLPDAMK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECCSSSSCCC-HHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHhhhhhcCCCcEEEEEECCCCCcCCC-HHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 22222235789999999999976432 2222221111 11223666777777787776665543
No 150
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=7.4e-12 Score=133.08 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=21.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEE
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLV 73 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~ 73 (609)
+|++||.+|||||||+|+|+|..........||+-|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 69999999999999999999987322222335655543
No 151
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.18 E-value=1.4e-11 Score=117.47 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=58.5
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-cc-chHHHHHHHHh-CCCCCceEEEeccc
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LA-TSDAIKISREV-DPRGDRTFGVLTKI 212 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~-~~~~l~l~~~~-d~~~~rti~VltK~ 212 (609)
.+.++||+|.... . ..+...|++.++++|++++-.+.+ +. ...+...+... ...+.++++|.||+
T Consensus 57 ~l~~~Dt~~~~~~-----~-------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGE-----N-------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcch-----h-------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 5678999996431 0 123345777889988876543321 11 12333333433 34578999999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHH
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~ 256 (609)
|+.+......+.........+..|+.+++.++.++++++..+..
T Consensus 125 Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~ 168 (192)
T 2cjw_A 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVR 168 (192)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred hhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHH
Confidence 98753221111111001122345677777777777666554443
No 152
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.17 E-value=2.4e-11 Score=125.67 Aligned_cols=117 Identities=22% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+++|.+|+|||||++++++..+ +.....+|.......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~------------------------------------- 195 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSAN------------------------------------- 195 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEE-------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEE-------------------------------------
Confidence 468999999999999999999998765 222222221110000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch---
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--- 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--- 189 (609)
+.+ ......+.||||||.... ..+...|++.+|++|+|++..+. ....
T Consensus 196 --------------~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~ 246 (332)
T 2wkq_A 196 --------------VMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSP-ASFHHVR 246 (332)
T ss_dssp --------------EEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCH-HHHHHHH
T ss_pred --------------EEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCH-HHHHHHH
Confidence 001 111235679999997654 23456789999999887654432 1111
Q ss_pred -HHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 190 -DAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 190 -~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 23344444444 7899999999999754
No 153
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.15 E-value=1.8e-11 Score=115.66 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=43.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc--c-cchHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD--L-ATSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d--~-~~~~~l~l~~~~d~~~~rti~VltK 211 (609)
..+.+|||||..+. ..+...|++++++++++++..+.. + ....|+..+....+ +.|+++|.||
T Consensus 56 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~nK 121 (184)
T 2zej_A 56 LVLNVWDFAGREEF-------------YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVGTH 121 (184)
T ss_dssp CEEEEEEECSHHHH-------------HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEEEC
T ss_pred eEEEEEecCCCHHH-------------HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEEEC
Confidence 46889999996542 334567888889887765433221 1 11233333333333 5889999999
Q ss_pred cCcCCC
Q 007296 212 IDLMDK 217 (609)
Q Consensus 212 ~D~~~~ 217 (609)
+|+.+.
T Consensus 122 ~Dl~~~ 127 (184)
T 2zej_A 122 LDVSDE 127 (184)
T ss_dssp GGGCCH
T ss_pred CCcccc
Confidence 999753
No 154
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.7e-11 Score=125.27 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
-.++|++||.||||||||+|+|+|.+....+...||+-|..-.
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~------------------------------------- 113 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGV------------------------------------- 113 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEE-------------------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEE-------------------------------------
Confidence 4679999999999999999999998764555556777663222
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+.. ....++|+||||+...+..+ ..+ -.-+...++.+|+|+++| +++.+...-+.+
T Consensus 114 ----------------~~~-~~~~i~l~D~pGl~~~a~~~--~~~----g~~~l~~i~~ad~il~vv-D~~~p~~~~~~i 169 (376)
T 4a9a_A 114 ----------------IRY-KGAKIQMLDLPGIIDGAKDG--RGR----GKQVIAVARTCNLLFIIL-DVNKPLHHKQII 169 (376)
T ss_dssp ----------------EEE-TTEEEEEEECGGGCCC-------CH----HHHHHHHHHHCSEEEEEE-ETTSHHHHHHHH
T ss_pred ----------------EEe-CCcEEEEEeCCCccCCchhh--hHH----HHHHHHHHHhcCcccccc-ccCccHHHHHHH
Confidence 111 22468899999998754432 112 233456678899887765 444333222211
Q ss_pred H-HHHHhC--CCCCceEEEecccCcC
Q 007296 193 K-ISREVD--PRGDRTFGVLTKIDLM 215 (609)
Q Consensus 193 ~-l~~~~d--~~~~rti~VltK~D~~ 215 (609)
. -+..++ -...|.++|+||.|.-
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhh
Confidence 1 112222 1346789999999963
No 155
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.13 E-value=6.9e-11 Score=113.15 Aligned_cols=160 Identities=14% Similarity=0.151 Sum_probs=84.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|+.|||||||+++|+|..+ +.......
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~-------------------------------------------- 38 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTI-------------------------------------------- 38 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCC-CC---CCC--------------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcc--------------------------------------------
Confidence 357899999999999999999999875 22111100
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~ 190 (609)
+.....-.+.+.+ ....+.+|||||.... +.+...|.+.+++++++++..+.. +.. ..
T Consensus 39 ------~~~~~~~~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (199)
T 2f9l_A 39 ------GVEFATRSIQVDG-KTIKAQIWDTAGQERY-------------RRITSAYYRGAVGALLVYDIAKHLTYENVER 98 (199)
T ss_dssp ------SCEEEEEEEEETT-EEEEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred ------ceeEEEEEEEECC-EEEEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 0000000111111 1135678999996543 223456778899887766433211 111 12
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
++..++.....+.+++.|+||+|+.+......+.........+..|+.+++.++.++++.+..+...
T Consensus 99 ~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 99 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 3333344444578999999999996532211111110111122344555555555555555444433
No 156
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.11 E-value=2e-10 Score=122.69 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-c--chHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL-A--TSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~-~--~~~~l~l~~~~d~~~~rti~VltK 211 (609)
..++||||||..+. ...+..++..+|++||+++.. ... . +.+++.+++.+.. .++|+|+||
T Consensus 75 ~~~~iiDtPGh~~~-------------~~~~~~~~~~~D~~ilVvda~-~~~~~~qt~~~~~~~~~~~~--~~iivviNK 138 (403)
T 3sjy_A 75 RRISFIDAPGHEVL-------------MATMLSGAALMDGAILVVAAN-EPFPQPQTREHFVALGIIGV--KNLIIVQNK 138 (403)
T ss_dssp EEEEEEECCCCGGG-------------HHHHHHHHTTCSEEEEEEETT-SCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred ceEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEEECC-CCCCcHHHHHHHHHHHHcCC--CCEEEEEEC
Confidence 36899999996442 455677889999998876544 333 2 2334445554432 479999999
Q ss_pred cCcCCCC
Q 007296 212 IDLMDKG 218 (609)
Q Consensus 212 ~D~~~~~ 218 (609)
+|+.+..
T Consensus 139 ~Dl~~~~ 145 (403)
T 3sjy_A 139 VDVVSKE 145 (403)
T ss_dssp GGGSCHH
T ss_pred ccccchH
Confidence 9998643
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.10 E-value=1.2e-10 Score=127.45 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=90.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+++|.+++|||||+++|++... .+..+....+. + .....+..-.++..+.+.... ++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~-----~i~~~~~~~~~--~---------~~~~~g~~~~~~~~~~d~~~~--e~ 93 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQLRKLQ--R---------ESETMGKSSFKFAWIMDQTNE--ER 93 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTT-----SSCHHHHHHHC--C----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC-----CccHHHHHHHH--H---------HHHhcCCCcchhhhhhccchh--Hh
Confidence 356899999999999999999987531 11110000000 0 000000000011111111111 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc------c
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD------L 186 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d------~ 186 (609)
..+++.+.....+..+ ...++||||||..+. ...+..+++.+|++||+++..+.. +
T Consensus 94 ----~~GiTi~~~~~~~~~~-~~~~~iiDTPG~~~f-------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~ 155 (483)
T 3p26_A 94 ----ERGVTVSICTSHFSTH-RANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFDL 155 (483)
T ss_dssp -----CCSSCCCCEEEEECS-SCEEEEECCCCCGGG-------------HHHHHHHHTTCSEEEEEEECCC------CCC
T ss_pred ----hcCcceEeeeEEEecC-CceEEEEECCCcHHH-------------HHHHHHhhhhCCEEEEEEECCCCccccccch
Confidence 1233333333334433 458999999998653 556678899999999877554321 1
Q ss_pred cch--HHHHHHHHhCCCCCceEEEecccCcCCCCCcH----HHHHhccc--ccc---CCceeeEeeCChhhhccccc
Q 007296 187 ATS--DAIKISREVDPRGDRTFGVLTKIDLMDKGTDA----VDILEGKS--YKL---RYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 187 ~~~--~~l~l~~~~d~~~~rti~VltK~D~~~~~~~~----~~~l~~~~--~~l---~~g~~~v~~~s~~~i~~~~~ 252 (609)
..+ +.+.++.... -.++|+|+||+|+.+..... .+.+.... ... ...|+.+++.++.+++++..
T Consensus 156 ~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~ 230 (483)
T 3p26_A 156 DGQTKEHMLLASSLG--IHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 230 (483)
T ss_dssp CHHHHHHHHHHHHTT--CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCC
T ss_pred hhhHHHHHHHHHHcC--CCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCc
Confidence 122 2222333332 14699999999998633211 11111110 011 24567777777788776554
No 158
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.09 E-value=2.5e-10 Score=127.87 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|++||.+|+|||||+|+|++... .+..+.- ..+.......+..-.++.-+.+....+ +
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i-----------~~~~~~~~~~g~~~~~~a~~~d~~~~e--~ 227 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL-----------RKLQRESETMGKSSFKFAWIMDQTNEE--R 227 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH-----------HHHHHHSSCSSSSCCSSSHHHHHHHHH--H
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH-----------HHHHhhhhhccccccceeeeeccchhh--h
Confidence 467999999999999999999998743 1111100 000000001111111222222222222 2
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc------c
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD------L 186 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d------~ 186 (609)
..|.+. ...... +.. ....++||||||..+. ...+..+++.+|++||+|+..+.. .
T Consensus 228 ~~GiTi--d~~~~~--~~~-~~~~~~iiDTPG~e~f-------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~ 289 (611)
T 3izq_1 228 ERGVTV--SICTSH--FST-HRANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFDL 289 (611)
T ss_dssp HTTTCC--SCSCCE--EEC-SSCEEEEEECCSSSCH-------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCT
T ss_pred hCCeeE--eeeeEE--Eec-CCceEEEEECCCCccc-------------HHHHHHHHhhcCceEEEEECCCCcccccchh
Confidence 223222 222222 223 2357999999997553 455667889999998877543311 1
Q ss_pred cchHHHHHHHHhCCCC-CceEEEecccCcCCCCCcH----HHHHhcccccc-----CCceeeEeeCChhhhccc
Q 007296 187 ATSDAIKISREVDPRG-DRTFGVLTKIDLMDKGTDA----VDILEGKSYKL-----RYPWIGVVNRSQADINKS 250 (609)
Q Consensus 187 ~~~~~l~l~~~~d~~~-~rti~VltK~D~~~~~~~~----~~~l~~~~~~l-----~~g~~~v~~~s~~~i~~~ 250 (609)
..+. ...+..+...+ .++|+|+||+|+.+..... .+.+......+ ...|+.+++.++.++.++
T Consensus 290 ~~qt-~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 290 DGQT-KEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TSHH-HHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hhHH-HHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1222 22333333344 4599999999998632211 11111111111 245667777777777654
No 159
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=122.64 Aligned_cols=113 Identities=15% Similarity=0.235 Sum_probs=50.8
Q ss_pred CcEEEeCCCCccccCC-CCccchHHHHHHHHHHhhcCC-------------ceEEEEEecCCCcccchHHHHHHHHhCCC
Q 007296 136 NLTLIDLPGLTKVAVD-GQPESIVQDIENMVRSYIEKP-------------NCIILAISPANQDLATSDAIKISREVDPR 201 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~~-------------~~iIL~v~~a~~d~~~~~~l~l~~~~d~~ 201 (609)
.+++|||||+...... ..-..+...+......|++.+ ++++++|.++...+...+. .+.+.+. .
T Consensus 96 ~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~-~ 173 (361)
T 2qag_A 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH-N 173 (361)
T ss_dssp EEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC-S
T ss_pred ceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc-c
Confidence 6899999998543211 001123344444444666543 3566666665555544443 4666665 5
Q ss_pred CCceEEEecccCcCCCCCcHH---HHHhccccccCCceeeEeeCChhhhccccc
Q 007296 202 GDRTFGVLTKIDLMDKGTDAV---DILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 202 ~~rti~VltK~D~~~~~~~~~---~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+.++|+|+||+|+.+... .. +.+.......+..|+.+++.++.+ ++.+.
T Consensus 174 ~~piIlV~NK~Dl~~~~e-v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~ 225 (361)
T 2qag_A 174 KVNIVPVIAKADTLTLKE-RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFK 225 (361)
T ss_dssp -SCEEEEEECCSSSCHHH-HHHHHHHHHHHTTCC-CCSCCCC----------CH
T ss_pred CCCEEEEEECCCCCCHHH-HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHH
Confidence 689999999999986432 11 122222223345666666666655 44443
No 160
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.08 E-value=1.3e-10 Score=126.70 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=88.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-++|+++|..++|||||+++|+|.+.. ....+.+. ++
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~----~~~d~~~~--------------------------------------e~ 55 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIAST----SAHDKLPE--------------------------------------SQ 55 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC------------------------------------------------------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcc----cccccccc--------------------------------------cc
Confidence 4578999999999999999999987620 00001110 01
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--H
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--D 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~ 190 (609)
..|.+..+... .+.+ +...++||||||..+ ....+..++..+|++||+++ ++.+...+ +
T Consensus 56 ~~GiTi~~~~~--~~~~---~~~~i~iiDtPGh~~-------------~~~~~~~~~~~aD~~ilVvd-a~~g~~~qt~e 116 (482)
T 1wb1_A 56 KRGITIDIGFS--AFKL---ENYRITLVDAPGHAD-------------LIRAVVSAADIIDLALIVVD-AKEGPKTQTGE 116 (482)
T ss_dssp --------CCC--EEEE---TTEEEEECCCSSHHH-------------HHHHHHHHTTSCCEEEEEEE-TTTCSCHHHHH
T ss_pred cCccEEecceE--EEEE---CCEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEe-cCCCccHHHHH
Confidence 11111111111 1112 235799999999633 24456678899999988765 44433222 2
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCCCC--c----HHHHHhcc-ccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDKGT--D----AVDILEGK-SYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~~~--~----~~~~l~~~-~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
.+.+++. .+.|.|+|+||+|+.++.. . ..+++... .+. ...++.+++.++.++++++..+...
T Consensus 117 ~l~~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~-~~~ii~vSA~~g~gI~~L~~~L~~~ 186 (482)
T 1wb1_A 117 HMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK-NSSIIPISAKTGFGVDELKNLIITT 186 (482)
T ss_dssp HHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG-GCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc-cceEEEEECcCCCCHHHHHHHHHHh
Confidence 3334443 4688899999999986321 0 11222211 111 3456666666667776665555443
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.07 E-value=2.7e-10 Score=125.30 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..+.|+|+|.+|||||||+|+|++..-.....|.+.... ..+.. +.+.... .+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~-------------------~~~~~------~~d~~~~--e~ 64 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK-------------------AARHA------TSDWMEL--EK 64 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC-----------------------CC------HHHHHHH--HH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc-------------------cccce------ecccchh--hh
Confidence 478999999999999999999974321110001000000 00000 1111111 11
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
..| .++......+.. ....++||||||..+. ...+..|++.+|++|+++++. .....+ ..
T Consensus 65 ~~G--iTi~~~~~~~~~---~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa~-~g~~~~-t~ 124 (528)
T 3tr5_A 65 QRG--ISVTTSVMQFPY---KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDAA-KGVEPR-TI 124 (528)
T ss_dssp HHC--CSSSSSEEEEEE---TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETT-TCSCHH-HH
T ss_pred cCC--eeEEEeEEEEEe---CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeCC-CCCCHH-HH
Confidence 122 223333333332 2357999999998764 335778999999998876554 333333 33
Q ss_pred HHHHHhCCCCCceEEEecccCcCCC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+.+.+...+.|+++|+||+|+...
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccc
Confidence 4556666678999999999999643
No 162
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.07 E-value=2.6e-10 Score=123.00 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc------hHHHHHHHHhCCCCCc-eEE
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT------SDAIKISREVDPRGDR-TFG 207 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~------~~~l~l~~~~d~~~~r-ti~ 207 (609)
..++||||||..+. ...+..+++.+|++||+|+.. .+... ......+..+...+.+ +|+
T Consensus 95 ~~~~iiDTPGh~~f-------------~~~~~~~~~~aD~~ilVVDa~-~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 95 KHFTILDAPGHKSF-------------VPNMIGGASQADLAVLVISAR-KGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred eEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECC-CCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence 48999999996543 445567788999998877543 33210 1122233333334566 899
Q ss_pred EecccCcCC
Q 007296 208 VLTKIDLMD 216 (609)
Q Consensus 208 VltK~D~~~ 216 (609)
|+||+|+.+
T Consensus 161 viNK~Dl~~ 169 (439)
T 3j2k_7 161 LINKMDDPT 169 (439)
T ss_pred EeecCCCcc
Confidence 999999964
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.02 E-value=3.2e-10 Score=107.86 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
...+|+|+|+.|||||||+++|+|..+ |.......-
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~------------------------------------------- 63 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIG------------------------------------------- 63 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCS-------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccc-------------------------------------------
Confidence 357999999999999999999999875 322211000
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccc-hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LAT-SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~-~~ 190 (609)
.....-.+.+.+ ....+.+|||||..+.. .++..|++.++.+++++...+.. +.+ ..
T Consensus 64 -------~~~~~~~i~~~g-~~~~~~i~Dt~g~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 122 (191)
T 1oix_A 64 -------VEFATRSIQVDG-KTIKAQIWDTAGLERYR-------------AITSAYYRGAVGALLVYDIAKHLTYENVER 122 (191)
T ss_dssp -------EEEEEEEEEETT-EEEEEEEEEECSCCSSS-------------CCCHHHHTTCCEEEEEEETTCHHHHHTHHH
T ss_pred -------eEEEEEEEEECC-EEEEEEEEECCCCcchh-------------hhhHHHhhcCCEEEEEEECcCHHHHHHHHH
Confidence 000000111111 11245689999986542 23456778888887765433221 111 12
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
++..++.......+++.|+||+|+.+.
T Consensus 123 ~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 123 WLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccc
Confidence 333334444556899999999999653
No 164
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.01 E-value=5.8e-10 Score=123.92 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
+++.|+|+|..++|||||+++|++.. +..++... . ..+.|..+ .++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~--~------------------~~~~D~~~--------~Er 50 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREK--R------------------EQLLDTLD--------VER 50 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCcccccc--c------------------ccccccch--------hhh
Confidence 47899999999999999999997532 11111100 0 00000000 001
Q ss_pred hcCCCCcccCCceEEEEecCC--CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPN--VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
. .+.++....+.+....++ ...++||||||..+. ...+..+++.+|++||+|+ +..+...+.
T Consensus 51 e--rGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVVD-a~~gv~~qt 114 (600)
T 2ywe_A 51 E--RGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLID-ASQGIEAQT 114 (600)
T ss_dssp -------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEEE-TTTBCCHHH
T ss_pred c--ccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEEE-CCCCccHHH
Confidence 1 122333344455444322 246889999998764 3456778899999988664 444443333
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.. ........+.|+|+|+||+|+.+.
T Consensus 115 ~~-~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 115 VA-NFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp HH-HHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HH-HHHHHHHCCCCEEEEEeccCcccc
Confidence 22 222223357899999999999754
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.00 E-value=1e-09 Score=118.29 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHHHHHHhCCCCC-ceEEEec
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPRGD-RTFGVLT 210 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~~~~-rti~Vlt 210 (609)
...++||||||..+. ...+..|+..+|++||+++. +..... .+++.++... +. ++|+|+|
T Consensus 103 ~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa-~~g~~~qt~~~l~~~~~~---~~~~iIvviN 165 (434)
T 1zun_B 103 KRKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDA-RYGVQTQTRRHSYIASLL---GIKHIVVAIN 165 (434)
T ss_dssp SEEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEET-TTCSCHHHHHHHHHHHHT---TCCEEEEEEE
T ss_pred CceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEEC-CCCCcHHHHHHHHHHHHc---CCCeEEEEEE
Confidence 457999999996543 34455788999999887654 443322 2334445443 43 5899999
Q ss_pred ccCcCCC
Q 007296 211 KIDLMDK 217 (609)
Q Consensus 211 K~D~~~~ 217 (609)
|+|+.+.
T Consensus 166 K~Dl~~~ 172 (434)
T 1zun_B 166 KMDLNGF 172 (434)
T ss_dssp CTTTTTS
T ss_pred cCcCCcc
Confidence 9999863
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.00 E-value=2.4e-10 Score=127.28 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=45.0
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
+.++||||||..+... +...+++.+|++|||++ ++.+...+. ...++.+...+.|+|+|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~~-------------~~~r~~~~aD~aILVvD-a~~Gv~~qT-~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTT-------------LRKRGGALADLAILIVD-INEGFKPQT-QEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCTT-------------SBCSSSBSCSEEEEEEE-TTTCCCHHH-HHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEEE-CCCCccHhH-HHHHHHHHHcCCeEEEEeccccc
Confidence 3689999999876532 23357788999988765 444433322 22333344457899999999999
Q ss_pred CC
Q 007296 215 MD 216 (609)
Q Consensus 215 ~~ 216 (609)
.+
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 75
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.99 E-value=6.5e-11 Score=128.79 Aligned_cols=114 Identities=19% Similarity=0.308 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|.|+|+|..++|||||+++|.+..+.....+..|.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~------------------------------------------- 39 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQ------------------------------------------- 39 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCC-------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeE-------------------------------------------
Confidence 5799999999999999999999876542111111110
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~ 190 (609)
.+.... +.. +...++||||||...... +...++..+|++||+++ ++.+... .+
T Consensus 40 ------~i~~~~----v~~-~~~~i~~iDTPGhe~f~~-------------~~~~~~~~aD~aILVVd-a~~g~~~qT~e 94 (501)
T 1zo1_I 40 ------HIGAYH----VET-ENGMITFLDTPGHAAFTS-------------MRARGAQATDIVVLVVA-ADDGVMPQTIE 94 (501)
T ss_dssp ------CSSCCC----CCT-TSSCCCEECCCTTTCCTT-------------SBCSSSBSCSSEEEEEE-TTTBSCTTTHH
T ss_pred ------eEEEEE----EEE-CCEEEEEEECCCcHHHHH-------------HHHHHHhhCCEEEEEee-cccCccHHHHH
Confidence 000000 111 234789999999766432 23456788999988775 4443322 23
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.+..++ ..+.|+|+|+||+|+.+.
T Consensus 95 ~l~~~~---~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 95 AIQHAK---AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp HHHHHH---HTTCCEEEEEECSSSSTT
T ss_pred HHHHHH---hcCceEEEEEEecccccc
Confidence 333333 356889999999999753
No 168
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.98 E-value=5.5e-10 Score=124.29 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=70.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..|+|+|..++|||||+++|++.. +..++.. .. ..+.|... .++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~--~~------------------~~~~D~~~--------~Er 48 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQIC------GGLSDRE--ME------------------AQVLDSMD--------LER 48 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHT------TC----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc------CCccccc--cc------------------ccccccch--------hhh
Confidence 47899999999999999999998632 1111100 00 00000000 001
Q ss_pred hcCCCCcccCCceEEEEecCC--CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 113 ETGRSKAISTVPIHLSIFSPN--VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~--~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
. .+.++....+.+.....+ ...++||||||..+. ...+..+++.+|++||+++ +......+.
T Consensus 49 e--rGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVVD-a~~gv~~qt 112 (599)
T 3cb4_D 49 E--RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVVD-AGQGVEAQT 112 (599)
T ss_dssp ----------CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEEE-TTTCCCTHH
T ss_pred c--ccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEE-CCCCCCHHH
Confidence 1 122233344444443212 247889999998664 4457788899999988765 444443333
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
.. ........+.|+|+|+||+|+.+.
T Consensus 113 ~~-~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 113 LA-NCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HH-HHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HH-HHHHHHHCCCCEEEeeeccCcccc
Confidence 22 222222346899999999999764
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.98 E-value=9.8e-10 Score=115.70 Aligned_cols=62 Identities=18% Similarity=0.174 Sum_probs=42.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHHHHHHhCCCCCce-EEEec-
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPRGDRT-FGVLT- 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~l~~~~d~~~~rt-i~Vlt- 210 (609)
..++||||||..+. ...+..+++.+|++||+++ +.+... .+++.+++. .+.+. |+|+|
T Consensus 60 ~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvNN 121 (370)
T 2elf_A 60 RNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALTR 121 (370)
T ss_dssp SEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEECC
T ss_pred eEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEEe
Confidence 46899999997653 2334567799999999876 444433 233334443 35666 99999
Q ss_pred ccCc
Q 007296 211 KIDL 214 (609)
Q Consensus 211 K~D~ 214 (609)
|+|+
T Consensus 122 K~Dl 125 (370)
T 2elf_A 122 SDST 125 (370)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9999
No 170
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.95 E-value=2.9e-09 Score=113.84 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=53.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc---cchHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL---ATSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK 211 (609)
..++||||||..+ +......++..+|++||+++ ++... .+.+.+.+++.+. ..++|+|+||
T Consensus 81 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVvd-a~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGHET-------------LMATMLSGASLMDGAILVIA-ANEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHTTCSCCSEEEEEEE-TTSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCHHH-------------HHHHHHHhHhhCCEEEEEEE-CCCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 3689999999532 12334456677899988765 44333 1223333444332 2479999999
Q ss_pred cCcCCCCC--cH----HHHHhccccccCCceeeEeeCChhhhcccccHH
Q 007296 212 IDLMDKGT--DA----VDILEGKSYKLRYPWIGVVNRSQADINKSVDMI 254 (609)
Q Consensus 212 ~D~~~~~~--~~----~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~ 254 (609)
+|+.+... .. .+++... ......++.+++.++.++++++..+
T Consensus 145 ~Dl~~~~~~~~~~~~i~~~l~~~-~~~~~~~i~vSA~~g~gi~~L~~~l 192 (408)
T 1s0u_A 145 IDLVDEKQAEENYEQIKEFVKGT-IAENAPIIPISAHHEANIDVLLKAI 192 (408)
T ss_dssp TTSSCTTTTTTHHHHHHHHHTTS-TTTTCCEEEC------CHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhhc-CCCCCeEEEeeCCCCCCHHHHHHHH
Confidence 99986542 11 2222210 1112456666666666665444433
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.95 E-value=1.6e-09 Score=104.13 Aligned_cols=126 Identities=22% Similarity=0.351 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-..|+++|.+|||||||+|+|+|..+.. .++..+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~----~~~~~~----------------------------------------- 59 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLA----RTSKTP----------------------------------------- 59 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------------------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc----cccCCC-----------------------------------------
Confidence 45689999999999999999999986411 111111
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc---CCceEEEEEecCCCcccch
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE---KPNCIILAISPANQDLATS 189 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~---~~~~iIL~v~~a~~d~~~~ 189 (609)
|.+. . .-.+.+. + .+.++||||+..... +....+.++..+..|++ ..+.+++++ ++.......
T Consensus 60 --G~~~--~--~~~~~~~--~--~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-d~~~~~~~~ 125 (210)
T 1pui_A 60 --GRTQ--L--INLFEVA--D--GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLM-DIRHPLKDL 125 (210)
T ss_dssp -----C--C--EEEEEEE--T--TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEE-ETTSCCCHH
T ss_pred --ccce--e--eEEEEec--C--CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEE-ECCCCCchh
Confidence 1000 0 0011111 1 688999999864211 11223344555556664 566666654 443332222
Q ss_pred HHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 190 DAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 190 ~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+ ..+...+...+.+.++|.||+|+...+
T Consensus 126 ~-~~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 126 D-QQMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp H-HHHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred H-HHHHHHHHHcCCCeEEEEecccCCCch
Confidence 1 123333334568899999999998654
No 172
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.95 E-value=9.4e-10 Score=115.02 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999984
No 173
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.94 E-value=1.9e-09 Score=115.39 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc---cchHHHHHHHHhCCCCCceEEEecc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL---ATSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~---~~~~~l~l~~~~d~~~~rti~VltK 211 (609)
..++||||||..+ +.......+..+|++||+++ ++... .+.+.+.+++.+. ..++|+|+||
T Consensus 83 ~~i~iiDtPGh~~-------------f~~~~~~~~~~~D~~ilVvd-a~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHEA-------------LMTTMLAGASLMDGAILVIA-ANEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHHH-------------HHHHHHHCGGGCSEEEEEEE-TTSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCChHH-------------HHHHHHhhhhhCCEEEEEEE-CCCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 4689999999533 13344566778899988765 44332 2233444555443 2578999999
Q ss_pred cCcCCC
Q 007296 212 IDLMDK 217 (609)
Q Consensus 212 ~D~~~~ 217 (609)
+|+.+.
T Consensus 147 ~Dl~~~ 152 (410)
T 1kk1_A 147 IELVDK 152 (410)
T ss_dssp GGGSCH
T ss_pred ccCCCH
Confidence 999864
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.92 E-value=7.9e-10 Score=119.90 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCC-cCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKD-FLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETD 111 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 111 (609)
....|+++|.+++|||||+|+|++.. .++... + ..+..-....+..-.+++-+.+.... +
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~----------------~~~~~~~~~~g~~~~~~a~~~d~~~~--e 66 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I----------------EKFEKEAAELGKGSFKYAWVLDKLKA--E 66 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H----------------HHHHHHGGGGSSSCCCHHHHHHHHHH--H
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H----------------HHhhhhHHhcCCcchhhhhhhccchh--H
Confidence 35789999999999999999998641 111000 0 00000000000001123323232222 1
Q ss_pred hhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc-----
Q 007296 112 RETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL----- 186 (609)
Q Consensus 112 ~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~----- 186 (609)
+..|.+..+. . ..+..+ ...++||||||..+. ...+..++..+|++||+++. ....
T Consensus 67 r~~GiTi~~~--~--~~~~~~-~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvda-~~g~~~~sf 127 (458)
T 1f60_A 67 RERGITIDIA--L--WKFETP-KYQVTVIDAPGHRDF-------------IKNMITGTSQADCAILIIAG-GVGEFEAGI 127 (458)
T ss_dssp HHTTCCCSCS--C--EEEECS-SEEEEEEECCCCTTH-------------HHHHHHSSSCCSEEEEEEEC-SHHHHHHHT
T ss_pred HhcCcEEEEE--E--EEEecC-CceEEEEECCCcHHH-------------HHHHHhhhhhCCEEEEEEeC-CcCcccccc
Confidence 2233322222 1 123332 347999999996542 44567889999999887654 3322
Q ss_pred ----cchHHHHHHHHhCCCCCc-eEEEecccCcCC
Q 007296 187 ----ATSDAIKISREVDPRGDR-TFGVLTKIDLMD 216 (609)
Q Consensus 187 ----~~~~~l~l~~~~d~~~~r-ti~VltK~D~~~ 216 (609)
.+.+.+.+++. .+.+ +|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12222333333 3454 899999999984
No 175
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.92 E-value=3e-09 Score=111.50 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=57.5
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
..++.||||||+... ....+..+|.+|+++++...+.. +. +...+ ...+.++|+||+|
T Consensus 171 ~~~~iiiDTpGi~~~----------------~~~~~~~aD~vl~V~d~~~~~~~-~~---l~~~~--~~~p~ivVlNK~D 228 (355)
T 3p32_A 171 GFDVILIETVGVGQS----------------EVAVANMVDTFVLLTLARTGDQL-QG---IKKGV--LELADIVVVNKAD 228 (355)
T ss_dssp TCCEEEEEECSCSSH----------------HHHHHTTCSEEEEEEESSTTCTT-TT---CCTTS--GGGCSEEEEECCC
T ss_pred CCCEEEEeCCCCCcH----------------HHHHHHhCCEEEEEECCCCCccH-HH---HHHhH--hhcCCEEEEECCC
Confidence 358999999997541 11235889999887765433211 11 11111 1358899999999
Q ss_pred cCCCCC--cHHHHHhccc--c-----ccCCceeeEeeCChhhhcccccHHHHHHH
Q 007296 214 LMDKGT--DAVDILEGKS--Y-----KLRYPWIGVVNRSQADINKSVDMIAARRR 259 (609)
Q Consensus 214 ~~~~~~--~~~~~l~~~~--~-----~l~~g~~~v~~~s~~~i~~~~~~~~~~~~ 259 (609)
+.+... ...+.+.... . ....+++.+++.+++|+++++..+.....
T Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 229 GEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 974321 0111111100 0 01234566666677788877776655543
No 176
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.90 E-value=1.8e-09 Score=115.28 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--HHHHHHHHhCCCCCc-eEEEec
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPRGDR-TFGVLT 210 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~Vlt 210 (609)
...++||||||..+. ...+..++..+|++|++++..+ ....+ +++.+++. .+.| +++|+|
T Consensus 74 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~-g~~~qt~~~l~~~~~---~~ip~iivviN 136 (405)
T 2c78_A 74 KRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAAD-GPMPQTREHILLARQ---VGVPYIVVFMN 136 (405)
T ss_dssp SCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETTT-CCCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECCC-CCcHHHHHHHHHHHH---cCCCEEEEEEE
Confidence 457999999997653 4456678899999988775543 33222 23334433 4667 789999
Q ss_pred ccCcCC
Q 007296 211 KIDLMD 216 (609)
Q Consensus 211 K~D~~~ 216 (609)
|+|+.+
T Consensus 137 K~Dl~~ 142 (405)
T 2c78_A 137 KVDMVD 142 (405)
T ss_dssp CGGGCC
T ss_pred CccccC
Confidence 999985
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.89 E-value=4.2e-09 Score=115.89 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=51.1
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ...+..|++.+|++|+++++.+ ....+ ...+.+.+...+.|+++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~~-g~~~~-t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAAK-GVEDR-TRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTT-CSCHH-HHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCCc-cchHH-HHHHHHHHHHcCCCEEEEEcCcC
Confidence 357999999998654 2346778999999988775543 33322 23466666777899999999999
Q ss_pred cCCCC
Q 007296 214 LMDKG 218 (609)
Q Consensus 214 ~~~~~ 218 (609)
+....
T Consensus 146 l~~~~ 150 (529)
T 2h5e_A 146 RDIRD 150 (529)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97643
No 178
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.88 E-value=8.3e-10 Score=110.28 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=45.5
Q ss_pred CCceEEEEEecCCC---cccc-hHHHHHHHHh-CCCCCceEEEecccCcCCCCCcHHHHHhccccc-cCCceeeEeeCCh
Q 007296 171 KPNCIILAISPANQ---DLAT-SDAIKISREV-DPRGDRTFGVLTKIDLMDKGTDAVDILEGKSYK-LRYPWIGVVNRSQ 244 (609)
Q Consensus 171 ~~~~iIL~v~~a~~---d~~~-~~~l~l~~~~-d~~~~rti~VltK~D~~~~~~~~~~~l~~~~~~-l~~g~~~v~~~s~ 244 (609)
++|++|+|++..+. .+.. ..++..+... ...+.|+++|+||+|+.+... . +........ ....|+.+++.++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-v-~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-I-RDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-H-HHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-H-HHHHHHHHhcCCCeEEEEECCCC
Confidence 68999887765442 1111 2233323222 334689999999999964321 1 111111111 2456777777777
Q ss_pred hhhcccccHHH
Q 007296 245 ADINKSVDMIA 255 (609)
Q Consensus 245 ~~i~~~~~~~~ 255 (609)
.++++++..+.
T Consensus 240 ~gv~elf~~l~ 250 (255)
T 3c5h_A 240 VNVDLAFSTLV 250 (255)
T ss_dssp BSHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77776655443
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.88 E-value=3.7e-09 Score=112.58 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=87.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.+.|++||.+||||||||++|+|......+....|..|..-.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~-------------------------------------- 198 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGV-------------------------------------- 198 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEE--------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeE--------------------------------------
Confidence 467999999999999999999997531112222233331100
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCccc-chHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLA-TSDAI 192 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~-~~~~l 192 (609)
+...+...++++|+||+......+ ..+... ....++.++.++.++......+. .+.+.
T Consensus 199 ---------------V~~~~~~~~~l~DtpGli~~a~~~--~~L~~~----fl~~~era~~lL~vvDls~~~~~~ls~g~ 257 (416)
T 1udx_A 199 ---------------VEVSEEERFTLADIPGIIEGASEG--KGLGLE----FLRHIARTRVLLYVLDAADEPLKTLETLR 257 (416)
T ss_dssp ---------------EECSSSCEEEEEECCCCCCCGGGS--CCSCHH----HHHHHTSSSEEEEEEETTSCHHHHHHHHH
T ss_pred ---------------EEecCcceEEEEeccccccchhhh--hhhhHH----HHHHHHHHHhhhEEeCCccCCHHHHHHHH
Confidence 122223568999999997643221 111111 12346678888776654311111 11122
Q ss_pred HHHHHhCC--CCCceEEEecccCcCCCCCcHHHHHhccccccCCceeeEeeCChhhhcccccHHHHHH
Q 007296 193 KISREVDP--RGDRTFGVLTKIDLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAARR 258 (609)
Q Consensus 193 ~l~~~~d~--~~~rti~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~~ 258 (609)
+-...+.+ ...|.|+|+||+|+... ...+.+.......+..++.+++.+.+++++++..+....
T Consensus 258 ~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 258 KEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp HHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 22222221 24789999999999764 222222111112234456666666667766665554443
No 180
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.88 E-value=3.3e-09 Score=114.28 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-------ccchH--HHHHHHHhCCCC-C
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-------LATSD--AIKISREVDPRG-D 203 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-------~~~~~--~l~l~~~~d~~~-~ 203 (609)
...++||||||..+. ...+..+++.+|++||+++..+ + +..+. .+.+++. .+ .
T Consensus 83 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~ 145 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-------------VKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLD 145 (435)
T ss_dssp SCEEEECCCSSSTTH-------------HHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCT
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCC
Confidence 357999999997653 3456778999999998776544 3 22222 2223333 34 3
Q ss_pred ceEEEecccCcCCC
Q 007296 204 RTFGVLTKIDLMDK 217 (609)
Q Consensus 204 rti~VltK~D~~~~ 217 (609)
++|+|+||+|+.+.
T Consensus 146 ~iivviNK~Dl~~~ 159 (435)
T 1jny_A 146 QLIVAVNKMDLTEP 159 (435)
T ss_dssp TCEEEEECGGGSSS
T ss_pred eEEEEEEcccCCCc
Confidence 68999999999863
No 181
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=2.3e-09 Score=111.89 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=26.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRP 71 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p 71 (609)
.+|++||.+|||||||+|+|+|..+.......||.-|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p 39 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEP 39 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECc
Confidence 4799999999999999999999874223333456555
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.86 E-value=8.8e-09 Score=105.60 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=72.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhcC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRETG 115 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 115 (609)
+|+++|+.+|||||+++.+.+. +.|.... |- +
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~~--~~---------------------------------------------~ 32 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQPLDTL--YL---------------------------------------------E 32 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCSGGGT--TC---------------------------------------------C
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCCCccc--ee---------------------------------------------c
Confidence 5899999999999999998876 3343211 10 1
Q ss_pred CCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc--hHHHH
Q 007296 116 RSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK 193 (609)
Q Consensus 116 ~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~--~~~l~ 193 (609)
.+.++... . + . ....|.+|||||..+.... .+ +...|+++++++|+|++..+. ... ..+.+
T Consensus 33 ~Tig~~~~--~--v-~-~~v~LqIWDTAGQErf~~~----~l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~ 95 (331)
T 3r7w_B 33 STSNPSLE--H--F-S-TLIDLAVMELPGQLNYFEP----SY------DSERLFKSVGALVYVIDSQDE-YINAITNLAM 95 (331)
T ss_dssp CCCSCCCE--E--E-C-SSSCEEEEECCSCSSSCCC----SH------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHH
T ss_pred CeeeeeeE--E--E-c-cEEEEEEEECCCchhccch----hh------hhhhhccCCCEEEEEEECCch-HHHHHHHHHH
Confidence 11222211 1 2 1 2368999999998775210 00 357899999999987755443 211 11212
Q ss_pred H---HHHhCCCCCceEEEecccCcCCC
Q 007296 194 I---SREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 194 l---~~~~d~~~~rti~VltK~D~~~~ 217 (609)
+ ++...| +.++++|.||+|+.++
T Consensus 96 ~l~~~~~~~~-~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 96 IIEYAYKVNP-SINIEVLIHKVDGLSE 121 (331)
T ss_dssp HHHHHHHHCT-TCEEEEECCCCCSSCS
T ss_pred HHHHHhhcCC-CCcEEEEEECcccCch
Confidence 2 233344 6899999999999864
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.79 E-value=1e-08 Score=109.25 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=40.9
Q ss_pred CCcEEEeCCCCccccCCC-CccchHHHHHHHHHHh-----------hcCCc--eEEEEEecCCCcccchHHHHHHHHhCC
Q 007296 135 VNLTLIDLPGLTKVAVDG-QPESIVQDIENMVRSY-----------IEKPN--CIILAISPANQDLATSDAIKISREVDP 200 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~-~~~~~~~~i~~~v~~y-----------i~~~~--~iIL~v~~a~~d~~~~~~l~l~~~~d~ 200 (609)
+.++++||||+....... .-..+.+.+......| +.+++ ++++++.|....+...+ ..+.+.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 478999999987542110 0112222233333334 34444 35454444333444444 346666765
Q ss_pred CCCceEEEecccCcCCC
Q 007296 201 RGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 201 ~~~rti~VltK~D~~~~ 217 (609)
+.++|.|+||+|+..+
T Consensus 167 -~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTP 182 (418)
T ss_dssp -TSEEEEEEESTTSSCH
T ss_pred -cCcEEEEEEcccCccH
Confidence 7899999999999864
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.78 E-value=1.6e-10 Score=128.92 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=33.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCC----cc--c--chHHHHHHHHhCCCCCc-e
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQ----DL--A--TSDAIKISREVDPRGDR-T 205 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~----d~--~--~~~~l~l~~~~d~~~~r-t 205 (609)
..++||||||..+.... +..++..+|++||+|+.... ++ . +.+.+.++.. .+.+ +
T Consensus 255 ~~i~iiDTPGh~~f~~~-------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~i 318 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG-------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEI 318 (592)
T ss_dssp ----CCEEESSSEEEEE-------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCE
T ss_pred eEEEEEECCChHHHHHH-------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeE
Confidence 57899999998764221 23466789999887654431 12 2 2233334443 3554 8
Q ss_pred EEEecccCcCC
Q 007296 206 FGVLTKIDLMD 216 (609)
Q Consensus 206 i~VltK~D~~~ 216 (609)
|+|+||+|+.+
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 99999999986
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.78 E-value=5.4e-09 Score=118.84 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=48.2
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ...+..+++.+|.+|++++.. .....+. ..+.+.+...+.|+++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvDa~-~g~~~~~-~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLDAQ-SGVEPQT-ETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEETT-TBSCHHH-HHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEECCC-CCCcHHH-HHHHHHHHHcCCCEEEEEECCC
Confidence 357999999998764 234677888999998876554 3333332 2333444445789999999999
Q ss_pred cCCC
Q 007296 214 LMDK 217 (609)
Q Consensus 214 ~~~~ 217 (609)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.75 E-value=3.6e-09 Score=115.01 Aligned_cols=67 Identities=19% Similarity=0.252 Sum_probs=38.0
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc--------cchHHHHHHHHhCCCCCc-
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL--------ATSDAIKISREVDPRGDR- 204 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~--------~~~~~l~l~~~~d~~~~r- 204 (609)
...++||||||..+. ...+..++..+|++||+|+..+..+ .+.+.+.++. ..+.+
T Consensus 120 ~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~---~~~vp~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR---TQGINH 183 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH---HTTCSS
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH---HcCCCE
Confidence 357899999997653 2335667899999998775443211 1222333333 34566
Q ss_pred eEEEecccCcCC
Q 007296 205 TFGVLTKIDLMD 216 (609)
Q Consensus 205 ti~VltK~D~~~ 216 (609)
+|+|+||+|+.+
T Consensus 184 iivviNK~Dl~~ 195 (467)
T 1r5b_A 184 LVVVINKMDEPS 195 (467)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECccCCC
Confidence 899999999965
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.73 E-value=1.4e-08 Score=103.84 Aligned_cols=179 Identities=17% Similarity=0.225 Sum_probs=77.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
-.|+|||+.|||||||++.|.|...+|.+ |+.- ....+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~-gi~~-~g~~~~--------------------------------------- 57 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPER-VISG-AAEKIE--------------------------------------- 57 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCC-Cccc-CCcccC---------------------------------------
Confidence 47799999999999999999997544443 2100 000000
Q ss_pred CCCCcccCCceEEEEecC-CCCCcEEEeCCCCccccCC-CCccchHHHHHHHHHHhhcCC-------------ceEEEEE
Q 007296 115 GRSKAISTVPIHLSIFSP-NVVNLTLIDLPGLTKVAVD-GQPESIVQDIENMVRSYIEKP-------------NCIILAI 179 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~-~~~~ltlvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~~-------------~~iIL~v 179 (609)
.+..+ ..+.+.+..+ ....++++||||+...... ..-..+...+......|+... +++++++
T Consensus 58 -~t~~~--~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ld 134 (301)
T 2qnr_A 58 -RTVQI--EASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFI 134 (301)
T ss_dssp ----------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEE
T ss_pred -CcceE--eeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeee
Confidence 00000 1111112211 2357899999998432110 001123333333333555432 3355545
Q ss_pred ecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCc--HHHHHhccccccCCceeeEeeCChhhhcccccHHHHH
Q 007296 180 SPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD--AVDILEGKSYKLRYPWIGVVNRSQADINKSVDMIAAR 257 (609)
Q Consensus 180 ~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~~~~~~ 257 (609)
.|....+...+ ..+.+.+.+ ..++++|+||.|+.....- ..+.........+..|+.+++.++ ++++.+......
T Consensus 135 ePt~~~Ld~~~-~~~l~~l~~-~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 135 SPFGHGLKPLD-VAFMKAIHN-KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp CSSSSSCCHHH-HHHHHHHTT-TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHH
T ss_pred cCcccCCCHHH-HHHHHHHHh-cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHH
Confidence 44333343333 356666654 4689999999999754310 111111112223456777777777 787777665554
Q ss_pred HHH
Q 007296 258 RRE 260 (609)
Q Consensus 258 ~~E 260 (609)
..+
T Consensus 212 i~~ 214 (301)
T 2qnr_A 212 LKA 214 (301)
T ss_dssp HHT
T ss_pred hhc
Confidence 444
No 188
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.72 E-value=1.4e-08 Score=108.16 Aligned_cols=66 Identities=14% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--HHHHHHHHhCCCCCc-eEEEec
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPRGDR-TFGVLT 210 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~Vlt 210 (609)
...++||||||..+. ...+..+++.+|++||+++.. .....+ +.+.+++. .+.| .|+|+|
T Consensus 65 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~-~g~~~qt~e~l~~~~~---~~vp~iivviN 127 (397)
T 1d2e_A 65 ARHYAHTDCPGHADY-------------VKNMITGTAPLDGCILVVAAN-DGPMPQTREHLLLARQ---IGVEHVVVYVN 127 (397)
T ss_dssp SCEEEEEECSSHHHH-------------HHHHHHTSSCCSEEEEEEETT-TCSCHHHHHHHHHHHH---TTCCCEEEEEE
T ss_pred CeEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECC-CCCCHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 457999999996542 345667889999998877543 333222 22333333 4677 689999
Q ss_pred ccCcCC
Q 007296 211 KIDLMD 216 (609)
Q Consensus 211 K~D~~~ 216 (609)
|+|+.+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999985
No 189
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.71 E-value=1.6e-08 Score=115.01 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=48.6
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
...+.||||||..+. ...+..+++.+|.+|+++++.+ ....+. ....+.+...+.|.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~~-g~~~~t-~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSSQ-GVEPQS-ETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETTT-CSCHHH-HHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECCC-Ccchhh-HHHHHHHHHcCCCEEEEEECCC
Confidence 457999999998653 4567888999999988776543 333222 2233334445789999999999
Q ss_pred cCCC
Q 007296 214 LMDK 217 (609)
Q Consensus 214 ~~~~ 217 (609)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9754
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.71 E-value=5.2e-08 Score=110.87 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
..+.||||||..+. ...+..+++.+|++|+++++. .+...+ ...+.+.+...+.|.++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~-~gv~~q-t~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVDF-------------TIEVERSMRVLDGAVMVYCAV-GGVQPQ-SETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccch-------------HHHHHHHHHHCCEEEEEEeCC-CCCcHH-HHHHHHHHHHcCCCEEEEEeCCCc
Confidence 57999999998653 445778889999998876554 333322 223445555567899999999999
Q ss_pred CCC
Q 007296 215 MDK 217 (609)
Q Consensus 215 ~~~ 217 (609)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.70 E-value=1.1e-08 Score=118.59 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=47.4
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
..+.||||||..+. ...+..|++.+|++|++++. ......+. ....+.+...+.+.|+|+||+|+
T Consensus 98 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvDa-~~g~~~qt-~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDT-IEGVCVQT-ETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEET-TTBSCHHH-HHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEeC-CCCCCHHH-HHHHHHHHHcCCCeEEEEECCCc
Confidence 46899999998775 33577889999999887654 44433333 23344444557899999999998
Q ss_pred C
Q 007296 215 M 215 (609)
Q Consensus 215 ~ 215 (609)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 7
No 192
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.68 E-value=1.8e-08 Score=117.62 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccch--HHHHHHHHhCCCCCc-eEEEec
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATS--DAIKISREVDPRGDR-TFGVLT 210 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~--~~l~l~~~~d~~~~r-ti~Vlt 210 (609)
...++||||||..+. ...+..+++.+|++||+|+.. .....+ +.+.+++. .+.| +|+|+|
T Consensus 358 ~~kI~IIDTPGHedF-------------~~~mi~gas~AD~aILVVDAt-dGv~~QTrEhL~ll~~---lgIP~IIVVIN 420 (1289)
T 3avx_A 358 TRHYAHVDCPGHADY-------------VKNMITGAAQMDGAILVVAAT-DGPMPQTREHILLGRQ---VGVPYIIVFLN 420 (1289)
T ss_dssp SCEEEEEECCCHHHH-------------HHHHHHTSCCCSEEEEEEETT-TCSCTTHHHHHHHHHH---HTCSCEEEEEE
T ss_pred CEEEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEcCC-ccCcHHHHHHHHHHHH---cCCCeEEEEEe
Confidence 457999999996542 345667889999998876543 333222 33444444 3567 689999
Q ss_pred ccCcCC
Q 007296 211 KIDLMD 216 (609)
Q Consensus 211 K~D~~~ 216 (609)
|+|+.+
T Consensus 421 KiDLv~ 426 (1289)
T 3avx_A 421 KCDMVD 426 (1289)
T ss_dssp CCTTCC
T ss_pred eccccc
Confidence 999985
No 193
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.68 E-value=3.7e-08 Score=104.64 Aligned_cols=135 Identities=17% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..|.++|||..|||||||||+|+|..+.... +....|..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~--~~~~~~~~--------------------------------------- 79 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEP--ATHTQPGV--------------------------------------- 79 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSC---------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCc--CCCCCccc---------------------------------------
Confidence 3566999999999999999999998542111 00000100
Q ss_pred hcCCCCcccCCceEEEEecCC-CCCcEEEeCCCCccccCCC-Cccc----hHHHHHHHHHHhhc---------C--CceE
Q 007296 113 ETGRSKAISTVPIHLSIFSPN-VVNLTLIDLPGLTKVAVDG-QPES----IVQDIENMVRSYIE---------K--PNCI 175 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~-~~~ltlvDtPGi~~~~~~~-~~~~----~~~~i~~~v~~yi~---------~--~~~i 175 (609)
....+.+....+. .+.++++|+||+....... .... +..++......|.. + .|++
T Consensus 80 --------~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~ 151 (427)
T 2qag_B 80 --------QLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVC 151 (427)
T ss_dssp --------EEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEE
T ss_pred --------eEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEE
Confidence 0011122222222 2378999999986532110 0011 22333344444421 1 2356
Q ss_pred EEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 176 ILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 176 IL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
++++.+++.++...+ ..+++.+. .+.++|.|+||+|.+.+.
T Consensus 152 v~fI~d~~~~l~~~D-ieilk~L~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 152 LYFIAPTGHSLKSLD-LVTMKKLD-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp EEEECCCC---CHHH-HHHHHHTC-SCSEEEEEESCGGGSCHH
T ss_pred EEEEeCCCCCCCHHH-HHHHHHHh-hCCCEEEEEcchhccchH
Confidence 677888877776666 46888887 679999999999998654
No 194
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.65 E-value=8.3e-09 Score=108.62 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|.+|+|||||+|+|+|.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999986
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.65 E-value=2.6e-08 Score=112.84 Aligned_cols=132 Identities=19% Similarity=0.251 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
....|+|+|..++|||||+++|++........|.+ . .+..+.|+.... +
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~---------------------~g~~~~d~~~~e--------~ 56 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--E---------------------EGTTTTDYTPEA--------K 56 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--G---------------------GTCCSSCCSHHH--------H
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--c---------------------CCcccccCCHHH--------H
Confidence 46789999999999999999999754310111111 0 011112221110 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
. .+.++...... +.. ....+.||||||..+. ...+..+++.+|.+++++++ ......+. .
T Consensus 57 ~--~giti~~~~~~--~~~-~~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD~-~~g~~~qt-~ 116 (665)
T 2dy1_A 57 L--HRTTVRTGVAP--LLF-RGHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVSA-EAGVQVGT-E 116 (665)
T ss_dssp H--TTSCCSCEEEE--EEE-TTEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEET-TTCSCHHH-H
T ss_pred h--cCCeEEecceE--Eee-CCEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEcC-CcccchhH-H
Confidence 1 11222222222 222 2457899999997653 45677889999999887764 43333322 2
Q ss_pred HHHHHhCCCCCceEEEecccCcC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~ 215 (609)
.+.+.+...+.+.|+|+||+|+.
T Consensus 117 ~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 117 RAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHccCCEEEEecCCchh
Confidence 34444444578999999999997
No 196
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.64 E-value=1.5e-08 Score=106.61 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=67.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccc-ccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRG-SGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
.+|+++|.+|+|||||+|+|+|......+ ...++..|.+++
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~-------------------------------------- 202 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL-------------------------------------- 202 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------------------------------------------
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec--------------------------------------
Confidence 57999999999999999999987431101 111233332221
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhh--cCCceEEEEEecCCCcccchHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYI--EKPNCIILAISPANQDLATSDA 191 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iIL~v~~a~~d~~~~~~ 191 (609)
+.....+ ...+.++||||+...... ...+. .+....++ +..+.+++++.+... .... .
T Consensus 203 ---------~~~~~~~----~~~~~liDtPG~~~~~~~--~~~l~---~~~l~~~~~~~~i~~~~~~l~~~~~-~~~g-~ 262 (368)
T 3h2y_A 203 ---------DLIDIPL----DEESSLYDTPGIINHHQM--AHYVG---KQSLKLITPTKEIKPMVFQLNEEQT-LFFS-G 262 (368)
T ss_dssp ---------CEEEEES----SSSCEEEECCCBCCTTSG--GGGSC---HHHHHHHSCSSCCCCEEEEECTTEE-EEET-T
T ss_pred ---------ceEEEEe----cCCeEEEeCCCcCcHHHH--HHHhh---HHHHHHhccccccCceEEEEcCCCE-EEEc-c
Confidence 1111111 124899999999764311 11111 12222333 456666665544221 1111 1
Q ss_pred HHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 192 IKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 192 l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+.....+...+.++++|+||+|.+...
T Consensus 263 l~~~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 263 LARFDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp TEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred eEEEEEecCCCceEEEEecCccccccc
Confidence 112233444568899999999998654
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.63 E-value=4.8e-08 Score=101.75 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 198
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.62 E-value=3.1e-08 Score=104.30 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
.-.+|++||.+|||||||+|+|+|..+.......||.-|..-...- ++ .. +..+ . .
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v-~~------------~r---~~~l----~----~ 76 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV-PD------------ER---FDFL----C----Q 76 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC-CC------------HH---HHHH----H----H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE-CC------------cc---ceee----c----c
Confidence 3568999999999999999999998752222334555553322110 00 00 0000 0 0
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
..... . . ....++||||||+.+.... .+.+......|++++|+|++|+..
T Consensus 77 ~~~p~--------~--~---~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~VvD~ 126 (396)
T 2ohf_A 77 YHKPA--------S--K---IPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLTRA 126 (396)
T ss_dssp HHCCS--------E--E---ECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEEEC
T ss_pred ccCcc--------c--c---cccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEEec
Confidence 00000 0 0 0125899999999875432 112223467889999999887654
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.56 E-value=2.9e-07 Score=95.64 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999974
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.53 E-value=1.3e-07 Score=99.02 Aligned_cols=108 Identities=17% Similarity=0.197 Sum_probs=60.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhhc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRET 114 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 114 (609)
.+|++||.+|||||||+|+|+|......+...||..|+.-.. ..++ .. +........
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~-~v~~------------------~~----l~~~~~~~~ 58 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV-PLED------------------ER----LYALQRTFA 58 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE-ECCC------------------HH----HHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE-ecCh------------------HH----HHHHHHHhc
Confidence 579999999999999999999875322333456777754332 1110 00 111111111
Q ss_pred CCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEec
Q 007296 115 GRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISP 181 (609)
Q Consensus 115 g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~ 181 (609)
. ... ........+.||||||+.+....+ +.+. +....+++.+|+|++|+..
T Consensus 59 ~-~~~---------~~~~~~~~i~lvDtpGl~~~a~~~--~~lg----~~fl~~ir~ad~ii~VvD~ 109 (368)
T 2dby_A 59 K-GER---------VPPVVPTHVEFVDIAGLVKGAHKG--EGLG----NQFLAHIREVAAIAHVLRC 109 (368)
T ss_dssp B-TTB---------CCCEECCEEEEEECCSCCCCCCSS--SCTT----HHHHHHHHTCSEEEEEEEC
T ss_pred c-ccc---------ccccCCceEEEEECCCcccccccc--chHH----HHHHHHHHhCCEEEEEEEC
Confidence 0 000 000012368899999998765432 1122 3345678999999887654
No 201
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.45 E-value=3.8e-07 Score=91.61 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=48.8
Q ss_pred CCcEEEeCCCCccccCCCCc-cchHHHHHHHHHHhh--------------cCCceEEEEEecCCCcccchHHHHHHHHhC
Q 007296 135 VNLTLIDLPGLTKVAVDGQP-ESIVQDIENMVRSYI--------------EKPNCIILAISPANQDLATSDAIKISREVD 199 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~-~~~~~~i~~~v~~yi--------------~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d 199 (609)
+.++++|+||+......... +.+.+.+..-...++ ..+.+.++++++....+...+ ..+++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 47899999998754322111 112222222222221 124677777776666666655 45777777
Q ss_pred CCCCceEEEecccCcCCCC
Q 007296 200 PRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 200 ~~~~rti~VltK~D~~~~~ 218 (609)
.. .++|.|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 66 8999999999998654
No 202
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.43 E-value=1.5e-07 Score=103.89 Aligned_cols=136 Identities=15% Similarity=0.245 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccC--CCCccCChHHHHHHHHHHh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHL--PRKRFNDFAAVRKEISDET 110 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~i~~~~ 110 (609)
....|+|||...+|||||.++|+-.. |...+.- ....+ .+..+.|+.+++.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~t------G~i~~~G---------------~V~~~~~~~~~~~D~~~~Er------ 82 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFG------GAIQMAG---------------SVKARKAARHATSDWMAMER------ 82 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHT------TCHHHHH---------------HHHHC---------------------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhc------Ccccccc---------------eeecCccccccccCChHHHH------
Confidence 35679999999999999999996321 1111100 00000 0011222222211
Q ss_pred hhhcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchH
Q 007296 111 DRETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSD 190 (609)
Q Consensus 111 ~~~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~ 190 (609)
..+-++....+.+.. +...+.||||||..++... +...++-+|..|++| +|..+...+.
T Consensus 83 ----eRGITI~s~~~~~~~---~~~~iNlIDTPGHvDF~~E-------------v~raL~~~DgAvlVv-da~~GV~~qT 141 (548)
T 3vqt_A 83 ----ERGISVTTSVMQFPY---RDRVVNLLDTPGHQDFSED-------------TYRVLTAVDSALVVI-DAAKGVEAQT 141 (548)
T ss_dssp ---------CTTTEEEEEE---TTEEEEEECCCCGGGCSHH-------------HHHHHHSCSEEEEEE-ETTTBSCHHH
T ss_pred ----HCCCcEeeceEEEEE---CCEEEEEEeCCCcHHHHHH-------------HHHHHHhcCceEEEe-ecCCCccccc
Confidence 122334455555443 3457999999999887433 567788899998866 5555555554
Q ss_pred HHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 191 AIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 191 ~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
. .+.+.+...+.|.|+++||+|....
T Consensus 142 ~-~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 142 R-KLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp H-HHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred H-HHHHHHHHhCCceEEEEecccchhc
Confidence 3 3666777778999999999998644
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.39 E-value=7.4e-07 Score=88.64 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHhh-----CCCc
Q 007296 32 DSLPSIAVVGGQSSGKSSVLESVV-----GKDF 59 (609)
Q Consensus 32 ~~lP~IvVvG~~ssGKSSllnal~-----g~~~ 59 (609)
...+.++++|..||||||++++|. |.+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v 44 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKV 44 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 357899999999999999999998 6655
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.37 E-value=6.6e-07 Score=97.33 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=45.6
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEeccc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLTKI 212 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~ 212 (609)
..++.||||||..... ..+...+..... ++ .++.+++++.+ .... ++...++.+... .+ +++|+||+
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i-~pd~vllVvDa-~~g~---~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AI-QPDNIVYVMDA-SIGQ---ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HH-CCSEEEEEEET-TCCT---THHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hh-cCceEEEEEec-cccc---cHHHHHHHHHhh-cCceEEEEeCC
Confidence 3589999999987521 123333333222 33 78888776654 4332 233455554432 45 58999999
Q ss_pred CcCCCCCcHHHH
Q 007296 213 DLMDKGTDAVDI 224 (609)
Q Consensus 213 D~~~~~~~~~~~ 224 (609)
|....+..+..+
T Consensus 251 D~~~~~g~~l~~ 262 (504)
T 2j37_W 251 DGHAKGGGALSA 262 (504)
T ss_dssp TSCCCCTHHHHH
T ss_pred ccccchHHHHHH
Confidence 998665444443
No 205
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.34 E-value=3.2e-07 Score=88.79 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.|+|+|.+|||||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999975
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.32 E-value=3.3e-07 Score=103.27 Aligned_cols=134 Identities=20% Similarity=0.220 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDRE 113 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 113 (609)
+-.|+|||...+|||||.++|+-.. |..++.- .. ..+..+.|+.+.+ +.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~------G~i~~~g------~v-----------~~g~~~~D~~~~E--------re 50 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNS------GAITELG------SV-----------DKGTTRTDNTLLE--------RQ 50 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHH------TCCSSCS------SC-----------CCSCCSTTCSTTH--------HH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHc------CCCcccc------cc-----------ccCCcccCCcHHH--------Hh
Confidence 4468999999999999999996211 1111100 00 0112233333221 11
Q ss_pred cCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHH
Q 007296 114 TGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIK 193 (609)
Q Consensus 114 ~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~ 193 (609)
.| -++....+.+. ++...+.||||||..++. .-+...++-+|..|++| +|..+...+.. .
T Consensus 51 RG--ITI~s~~~~~~---~~~~~iNlIDTPGH~DF~-------------~Ev~raL~~~DgavlVV-Da~~GV~~qT~-~ 110 (638)
T 3j25_A 51 RG--ITIQTGITSFQ---WENTKVNIIDTPGHMDFL-------------AEVYRSLSVLDGAILLI-SAKDGVQAQTR-I 110 (638)
T ss_dssp HS--SCSSCCCCCCB---CSSCBCCCEECCCSSSTH-------------HHHHHHHTTCSEEECCE-ESSCTTCSHHH-H
T ss_pred CC--CcEEeeeEEEE---ECCEEEEEEECCCcHHHH-------------HHHHHHHHHhCEEEEEE-eCCCCCcHHHH-H
Confidence 12 22333333322 234578999999988763 33667788899998865 55566665543 3
Q ss_pred HHHHhCCCCCceEEEecccCcCCCC
Q 007296 194 ISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 194 l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+.+.+...+.|.|+++||+|.....
T Consensus 111 v~~~a~~~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 111 LFHALRKMGIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHHTCSCEECCEECCSSSCC
T ss_pred HHHHHHHcCCCeEEEEeccccccCC
Confidence 5666666678999999999986543
No 207
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.30 E-value=5e-07 Score=95.31 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCc-CcccccccccccEE
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDF-LPRGSGIVTRRPLV 73 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~-lP~~~~~~Tr~p~~ 73 (609)
.-..|++||.+|||||||+|+|+|..+ .......||+-|+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 356899999999999999999999875 23333456666643
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.29 E-value=5.9e-07 Score=102.51 Aligned_cols=137 Identities=13% Similarity=0.175 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
++..|+|||...+|||||.++|+-.. |...+ ...+. .+..+.|+.+.+.
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~-~g~v~----------------~~~~~~D~~~~E~-------- 60 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHK-LGEVH----------------DGAATTDWMVQEQ-------- 60 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHH-C-----------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCc-Cceec----------------CCCccCCChHHHH--------
Confidence 46789999999999999999997321 11111 10000 0112223322211
Q ss_pred hcCCCCcccCCceEEEEecCC----CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc
Q 007296 113 ETGRSKAISTVPIHLSIFSPN----VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT 188 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~----~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~ 188 (609)
.++-++....+.+...+.. ...+.||||||..++. .-|...++-+|..|++| ++..+...
T Consensus 61 --eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~-------------~Ev~~aLr~~DgavlvV-DaveGV~~ 124 (709)
T 4fn5_A 61 --ERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT-------------IEVERSLRVLDGAVVVF-CGTSGVEP 124 (709)
T ss_dssp ---------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH-------------HHHHHHHHHCSEEEEEE-ETTTCSCH
T ss_pred --HcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH-------------HHHHHHHHHhCeEEEEE-ECCCCCch
Confidence 1233445566666554332 3468999999998873 33566778899998766 55555555
Q ss_pred hHHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 189 SDAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 189 ~~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
+.. .+.+.+...+.|.|+|+||+|....
T Consensus 125 qT~-~v~~~a~~~~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 125 QSE-TVWRQANKYGVPRIVYVNKMDRQGA 152 (709)
T ss_dssp HHH-HHHHHHHHHTCCEEEEEECSSSTTC
T ss_pred hHH-HHHHHHHHcCCCeEEEEccccccCc
Confidence 443 4666666778999999999998643
No 209
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.26 E-value=9.9e-06 Score=86.39 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=50.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||.... .......+..+ ..+..++.++||+++ .. .+++...++.+.+....+.+|+||+|.
T Consensus 183 ~DvVIIDTaGrl~~-----d~~lm~el~~i--~~~~~pd~vlLVvDA-~~---gq~a~~~a~~f~~~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKE-----DKALIEEMKQI--SNVIHPHEVILVIDG-TI---GQQAYNQALAFKEATPIGSIIVTKLDG 251 (443)
T ss_dssp CSEEEEECCCCSSC-----CHHHHHHHHHH--HHHHCCSEEEEEEEG-GG---GGGHHHHHHHHHHSCTTEEEEEECCSS
T ss_pred CCEEEEECCCcccc-----hHHHHHHHHHH--HHhhcCceEEEEEeC-CC---chhHHHHHHHHHhhCCCeEEEEECCCC
Confidence 58999999997642 12233333332 223367877776544 33 244556777777666778899999999
Q ss_pred CCCCCcHHHHH
Q 007296 215 MDKGTDAVDIL 225 (609)
Q Consensus 215 ~~~~~~~~~~l 225 (609)
...+..+..+.
T Consensus 252 ~~~gG~~ls~~ 262 (443)
T 3dm5_A 252 SAKGGGALSAV 262 (443)
T ss_dssp CSSHHHHHHHH
T ss_pred cccccHHHHHH
Confidence 87665445544
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.23 E-value=6e-06 Score=87.62 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCcccccccccccEEEEEEecCCCccchhhccCCCCccCChHHHHHHHHHHhhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIQEGKEYAEFMHLPRKRFNDFAAVRKEISDETDR 112 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 112 (609)
..+.++++|+.|||||||||+|+|..- |....+....+ .+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~-~~-------------------------------------- 107 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVV-EV-------------------------------------- 107 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC------------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCe-ec--------------------------------------
Confidence 356899999999999999999999742 32211211111 00
Q ss_pred hcCCCCcccCCceEEEEecCCCCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHH
Q 007296 113 ETGRSKAISTVPIHLSIFSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAI 192 (609)
Q Consensus 113 ~~g~~~~~s~~~i~l~i~~~~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l 192 (609)
+...+. ...+..++++++|+||+.... ....+.++.+ -+.+.+..+. .+... . .....
T Consensus 108 --------t~~~~v--~q~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~---~L~~~~~~~~--lS~G~-~-~kqrv 165 (413)
T 1tq4_A 108 --------TMERHP--YKHPNIPNVVFWDLPGIGSTN-----FPPDTYLEKM---KFYEYDFFII--ISATR-F-KKNDI 165 (413)
T ss_dssp ---------CCCEE--EECSSCTTEEEEECCCGGGSS-----CCHHHHHHHT---TGGGCSEEEE--EESSC-C-CHHHH
T ss_pred --------ceeEEe--ccccccCCeeehHhhcccchH-----HHHHHHHHHc---CCCccCCeEE--eCCCC-c-cHHHH
Confidence 000011 122445689999999986421 1122222211 1334444433 34332 2 33334
Q ss_pred HHHHHhCCCCCceEEEecccCcC
Q 007296 193 KISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 193 ~l~~~~d~~~~rti~VltK~D~~ 215 (609)
.+++.+...+.|+++|+||+|+.
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCccc
Confidence 57887777789999999999974
No 211
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.17 E-value=1.5e-06 Score=87.94 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
-.+|++||.+|+|||||+|+|+|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 46899999999999999999999875
No 212
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.11 E-value=5e-06 Score=91.94 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..+.|+|||.||+|||||||+|+|...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 478999999999999999999999864
No 213
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.03 E-value=6.8e-06 Score=79.56 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
..|.|+|+|.+|||||||++++++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 579999999999999999999997643
No 214
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.98 E-value=6.1e-05 Score=80.26 Aligned_cols=83 Identities=18% Similarity=0.330 Sum_probs=48.5
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
.+++.||||||....+. .......+..+. ..+ .++.++||+++.. . +++...++.+.+....+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~vlLVlDa~~-g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDDVILVIDASI-G---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSEEEEEEEGGG-G---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcceEEEEeCcc-c---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 46899999999654111 122333333332 222 5677777665433 2 3344566666544466889999999
Q ss_pred cCCCCCcHHHHH
Q 007296 214 LMDKGTDAVDIL 225 (609)
Q Consensus 214 ~~~~~~~~~~~l 225 (609)
....+..+..+.
T Consensus 250 ~~a~~G~als~~ 261 (433)
T 3kl4_A 250 GTAKGGGALSAV 261 (433)
T ss_dssp GCSCHHHHHHHH
T ss_pred ccccchHHHHHH
Confidence 876654444444
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.92 E-value=6.9e-06 Score=82.00 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=23.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
.+|++||.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999999865
No 216
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.92 E-value=2.5e-05 Score=83.60 Aligned_cols=80 Identities=24% Similarity=0.236 Sum_probs=45.8
Q ss_pred CCCCcEEEeCCCCccccCCCCccchHHHHHHHHH-HhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCC-CceEEEec
Q 007296 133 NVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVR-SYIEKPNCIILAISPANQDLATSDAIKISREVDPRG-DRTFGVLT 210 (609)
Q Consensus 133 ~~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~-~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~-~rti~Vlt 210 (609)
...++.||||||.... ....+..+.. ..+..++.+++++. +..+ +++...++.+.+.- ..+.+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vllVvd-a~~g---~~~~~~~~~~~~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIILVID-GTIG---QQAGIQAKAFKEAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEEEEE-GGGG---GGHHHHHHHHHTTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeEEee-cccc---HHHHHHHHHHhhcccCCeEEEEe
Confidence 3458999999997642 1112222211 12236888877654 4333 24445566665432 33889999
Q ss_pred ccCcCCCCCcHHHH
Q 007296 211 KIDLMDKGTDAVDI 224 (609)
Q Consensus 211 K~D~~~~~~~~~~~ 224 (609)
|+|....+..+..+
T Consensus 247 K~D~~~~~g~~l~~ 260 (432)
T 2v3c_C 247 KLDGSAKGGGALSA 260 (432)
T ss_dssp CSSSCSTTHHHHHH
T ss_pred CCCCccchHHHHHH
Confidence 99987655434443
No 217
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.58 E-value=0.00022 Score=72.64 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=49.4
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
++.++||+|...... ..+..+.++-..+.+..+..|+.++|++++.. .++....++.+......+++++||.|..
T Consensus 186 d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t----~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWLVLDAVT----GQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB----CTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH----HHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 567999999754311 11222333333344455667887777655433 2344445554433334589999999987
Q ss_pred CCCCcHHHHHh
Q 007296 216 DKGTDAVDILE 226 (609)
Q Consensus 216 ~~~~~~~~~l~ 226 (609)
..+..+..+..
T Consensus 261 a~gg~~l~i~~ 271 (304)
T 1rj9_A 261 AKGGVLIPIVR 271 (304)
T ss_dssp CCCTTHHHHHH
T ss_pred ccccHHHHHHH
Confidence 76665665543
No 218
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.55 E-value=4.6e-05 Score=81.49 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..-.|+|+|.+++|||+|||+|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4678999999999999999999974
No 219
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.54 E-value=0.00036 Score=70.82 Aligned_cols=82 Identities=17% Similarity=0.313 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCc-eEEEeccc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDR-TFGVLTKI 212 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~r-ti~VltK~ 212 (609)
..++.||||||...... ...+...+..+ ..+..++.+++++.+ .. .+++...++.+.+. .+ +.+|+||+
T Consensus 180 ~~D~ViIDTpg~~~~~~---~~~l~~el~~i--~~~~~~d~vllVvda-~~---g~~~~~~~~~~~~~-~~i~gvVlnk~ 249 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGE---EAALLEEMKNI--YEAIKPDEVTLVIDA-SI---GQKAYDLASKFNQA-SKIGTIIITKM 249 (297)
T ss_dssp TCSEEEEECCCSCCTTC---HHHHHHHHHHH--HHHHCCSEEEEEEEG-GG---GGGHHHHHHHHHHT-CTTEEEEEECG
T ss_pred CCCEEEEeCCCCccccc---HHHHHHHHHHH--HHHhcCCEEEEEeeC-Cc---hHHHHHHHHHHHhh-CCCCEEEEeCC
Confidence 35899999999765100 11122222221 223468888776654 32 24455566666543 44 77889999
Q ss_pred CcCCCCCcHHHHH
Q 007296 213 DLMDKGTDAVDIL 225 (609)
Q Consensus 213 D~~~~~~~~~~~l 225 (609)
|....+..+..+.
T Consensus 250 D~~~~~g~~~~~~ 262 (297)
T 1j8m_F 250 DGTAKGGGALSAV 262 (297)
T ss_dssp GGCTTHHHHHHHH
T ss_pred CCCcchHHHHHHH
Confidence 9875544344443
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.45 E-value=0.00035 Score=71.91 Aligned_cols=79 Identities=22% Similarity=0.352 Sum_probs=48.5
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
++.++||+|..... ......+..+.+.. .+|-.++++++.. .+++...++.+......+++|+||.|..
T Consensus 213 d~vliDtaG~~~~~-----~~l~~eL~~i~ral--~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 213 DVVLIDTAGRSETN-----RNLMDEMKKIARVT--KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp SEEEEEECCSCCTT-----TCHHHHHHHHHHHH--CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred hhhHHhhccchhHH-----HHHHHHHHHHHHHh--cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 56789999986532 22444444433322 3666666665433 2566677777665456789999999986
Q ss_pred CCCCcHHHHH
Q 007296 216 DKGTDAVDIL 225 (609)
Q Consensus 216 ~~~~~~~~~l 225 (609)
..+..+..++
T Consensus 282 a~~G~~l~~~ 291 (328)
T 3e70_C 282 ARGGAALSIS 291 (328)
T ss_dssp SCCHHHHHHH
T ss_pred cchhHHHHHH
Confidence 6655455544
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.40 E-value=0.00031 Score=75.63 Aligned_cols=83 Identities=16% Similarity=0.261 Sum_probs=48.5
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHH---HHHhhc-CCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEec
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENM---VRSYIE-KPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLT 210 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~---v~~yi~-~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vlt 210 (609)
.++.||||+|..... .++...+..+ ++.... .++.++|++++ .. .++++..++.+...-..+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDa-tt---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDA-ST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEG-GG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecC-cc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 368899999976431 1122222222 222222 36677776544 32 24555666665543346788999
Q ss_pred ccCcCCCCCcHHHHHh
Q 007296 211 KIDLMDKGTDAVDILE 226 (609)
Q Consensus 211 K~D~~~~~~~~~~~l~ 226 (609)
|.|-...+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777766666654
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.40 E-value=0.00063 Score=72.67 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||..... ......+.. ..++..++.+++|+.+ ... +++...++.+.+.-.-+-+|+||+|.
T Consensus 184 ~D~VIIDTpG~l~~~-----~~l~~~L~~--~~~~~~p~~vllVvda-~~g---~~~~~~~~~f~~~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVD-----EAMMDEIKQ--VHASINPVETLFVVDA-MTG---QDAANTAKAFNEALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTC-----HHHHHHHHH--HHHHSCCSEEEEEEET-TBC---TTHHHHHHHHHHHSCCCCEEEECTTS
T ss_pred CCEEEEECCCccccc-----HHHHHHHHH--HHHhhcCcceeEEeec-chh---HHHHHHHHHHhccCCCeEEEEecCCC
Confidence 589999999965421 111111111 1345578888776654 332 34455566554322224568999998
Q ss_pred CCCCCcHHHHH
Q 007296 215 MDKGTDAVDIL 225 (609)
Q Consensus 215 ~~~~~~~~~~l 225 (609)
...+..+..+.
T Consensus 253 ~~~~g~~l~i~ 263 (433)
T 2xxa_A 253 DARGGAALSIR 263 (433)
T ss_dssp SSCCTHHHHHH
T ss_pred CccHHHHHHHH
Confidence 76554444443
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.38 E-value=0.0015 Score=66.26 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=43.7
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhc--CCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIE--KPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTK 211 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK 211 (609)
.+++.|+||||..... ...+..+. ..+. .++.++++ +++..+ ..+..++++.+... ...-+|+||
T Consensus 182 ~~dlvIiDT~G~~~~~--------~~~~~el~-~~l~~~~~~~~~lV-l~at~~--~~~~~~~~~~~~~l-~~~giVltk 248 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKD--------PQYIDELK-ETIPFESSIQSFLV-LSATAK--YEDMKHIVKRFSSV-PVNQYIFTK 248 (296)
T ss_dssp GSSEEEEECCCCCTTS--------HHHHHHHH-HHSCCCTTEEEEEE-EETTBC--HHHHHHHTTTTSSS-CCCEEEEEC
T ss_pred CCCEEEEeCCCCChhh--------HHHHHHHH-HHHhhcCCCeEEEE-EECCCC--HHHHHHHHHHHhcC-CCCEEEEeC
Confidence 3589999999987431 12222322 2333 35555554 444432 23444455555432 234567899
Q ss_pred cCcCCCCCcHHHHHh
Q 007296 212 IDLMDKGTDAVDILE 226 (609)
Q Consensus 212 ~D~~~~~~~~~~~l~ 226 (609)
.|....+..+..++.
T Consensus 249 ~D~~~~~g~~~~~~~ 263 (296)
T 2px0_A 249 IDETTSLGSVFNILA 263 (296)
T ss_dssp TTTCSCCHHHHHHHH
T ss_pred CCcccchhHHHHHHH
Confidence 998766655555554
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.30 E-value=0.00043 Score=70.51 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHh---h-cCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSY---I-EKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~y---i-~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 209 (609)
.+++.|+||||.... ...+.+.+..+.... + ..++.++|++ ++.. .+++++.++.+.....-+-+|+
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l~~~i~~~i~~~p~~vllVl-da~t---~~~~l~~a~~~~~~~~i~gvVl 256 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKVHRVVKKKIPDAPHETLLVI-DATT---GQNGLVQAKIFKEAVNVTGIIL 256 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHHHHHGGGTCTTCCSEEEEEE-EGGG---HHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHHHHHHhhccCCCCcEEEEEE-ECCC---CHHHHHHHHHHHhcCCCCEEEE
Confidence 358999999995321 112223333322211 2 2477777765 4432 2444445554443334466789
Q ss_pred cccCcCCCCCcHHHHHh
Q 007296 210 TKIDLMDKGTDAVDILE 226 (609)
Q Consensus 210 tK~D~~~~~~~~~~~l~ 226 (609)
||.|....+..+..+..
T Consensus 257 Tk~D~~~~gG~~l~~~~ 273 (306)
T 1vma_A 257 TKLDGTAKGGITLAIAR 273 (306)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCccchHHHHHHHH
Confidence 99998877766666553
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.92 E-value=0.0043 Score=63.46 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=46.9
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHH---HHHHhh-cCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEe
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIEN---MVRSYI-EKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVL 209 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~---~v~~yi-~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~Vl 209 (609)
..++.||||||..... ......+.. .+...+ ..++.+++++.+ .. .++++..++.+.+...-+=+|+
T Consensus 191 ~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a-~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLLVIDA-TT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEG-GG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEEEEEC-CC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 3589999999976531 111112211 111111 237777776544 32 2555666666665434445678
Q ss_pred cccCcCCCCCcHHHHHh
Q 007296 210 TKIDLMDKGTDAVDILE 226 (609)
Q Consensus 210 tK~D~~~~~~~~~~~l~ 226 (609)
||.|....+..+..+..
T Consensus 262 tk~d~~~~~g~~~~~~~ 278 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIKE 278 (320)
T ss_dssp ECGGGCSCTTHHHHHHH
T ss_pred eCCCCCCchhHHHHHHH
Confidence 99998766655555543
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.86 E-value=0.0015 Score=69.45 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDL 214 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~ 214 (609)
.++.||||||..... ......+..+ ..+-.++.++|++.+ .. .+++...++.+.+.-..+-+|+||.|.
T Consensus 181 ~DvVIIDTaG~l~~d-----~~l~~el~~i--~~~~~pd~vlLVvDa-~t---gq~av~~a~~f~~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 181 RDLILVDTAGRLQID-----EPLMGELARL--KEVLGPDEVLLVLDA-MT---GQEALSVARAFDEKVGVTGLVLTKLDG 249 (425)
T ss_dssp CSEEEEECCCCSSCC-----HHHHHHHHHH--HHHHCCSEEEEEEEG-GG---TTHHHHHHHHHHHHTCCCEEEEESGGG
T ss_pred CCEEEEcCCCccccc-----HHHHHHHHHh--hhccCCceEEEEEec-cc---hHHHHHHHHHHHhcCCceEEEEeCcCC
Confidence 488999999965431 1122222111 112267878776654 32 256666666665433346678999998
Q ss_pred CCCCCcHHHHH
Q 007296 215 MDKGTDAVDIL 225 (609)
Q Consensus 215 ~~~~~~~~~~l 225 (609)
...+..+..+.
T Consensus 250 ~~~~g~alsi~ 260 (425)
T 2ffh_A 250 DARGGAALSAR 260 (425)
T ss_dssp CSSCHHHHHHH
T ss_pred cccHHHHHHHH
Confidence 65554444443
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.83 E-value=0.0024 Score=66.31 Aligned_cols=86 Identities=23% Similarity=0.275 Sum_probs=47.7
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
+..++||.|+..... ..+.++..+...+.+..+.+|+-++|+++ +.... +....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCH-HHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 356899999864321 11122332333344455567886777666 33322 22223333332234688999999987
Q ss_pred CCCCcHHHHHh
Q 007296 216 DKGTDAVDILE 226 (609)
Q Consensus 216 ~~~~~~~~~l~ 226 (609)
..+.....+..
T Consensus 317 ~~gG~~lsi~~ 327 (359)
T 2og2_A 317 ARGGCVVSVVE 327 (359)
T ss_dssp SCTHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 77765565553
No 228
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.65 E-value=0.003 Score=64.11 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=45.6
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
+..++||.|+...... .+.++.++...+.+..+.+|+-++|+++ +.... +....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~~-~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYS-LMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHH-HHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchhH-HHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 3568999998643210 1112222222233334556886667666 44322 22223343332234688999999987
Q ss_pred CCCCcHHHHHh
Q 007296 216 DKGTDAVDILE 226 (609)
Q Consensus 216 ~~~~~~~~~l~ 226 (609)
..+.....+..
T Consensus 260 ~~~g~~l~~~~ 270 (302)
T 3b9q_A 260 ARGGCVVSVVE 270 (302)
T ss_dssp SCTHHHHHHHH
T ss_pred CccChheehHH
Confidence 66655555543
No 229
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.62 E-value=0.00069 Score=70.40 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=49.0
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcc---------cchHHHHHHHHhCC----
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDL---------ATSDAIKISREVDP---- 200 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~---------~~~~~l~l~~~~d~---- 200 (609)
...+.+|||+|..+. +.++..|.++++++|+|++..+.|- .-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe~~-------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 457899999997653 5567789999999999876655321 12344444444332
Q ss_pred CCCceEEEecccCcC
Q 007296 201 RGDRTFGVLTKIDLM 215 (609)
Q Consensus 201 ~~~rti~VltK~D~~ 215 (609)
.+.++|+|+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 468999999999985
No 230
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.55 E-value=0.0009 Score=67.98 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=57.9
Q ss_pred CcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcC
Q 007296 136 NLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLM 215 (609)
Q Consensus 136 ~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~ 215 (609)
.+.+||| ..+. ..+...|++++|++|+|++..+.+.......++...+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer~-------------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRK-------------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCS-------------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--cccc-------------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7999999 2222 334557999999998876554433222211122222222478999999999997
Q ss_pred CCCC--cHHHHHhccccccCCceeeEeeCChhhhccccc
Q 007296 216 DKGT--DAVDILEGKSYKLRYPWIGVVNRSQADINKSVD 252 (609)
Q Consensus 216 ~~~~--~~~~~l~~~~~~l~~g~~~v~~~s~~~i~~~~~ 252 (609)
+... +..+.+.... .. ..|+.+++.++.+++++++
T Consensus 129 ~~~~v~~~~~~~~~~~-~~-~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 129 DEDDLRKVRELEEIYS-GL-YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp CHHHHHHHHHHHHHHT-TT-SCEEECCTTTCTTHHHHHH
T ss_pred CchhHHHHHHHHHHHh-hh-CcEEEEECCCCcCHHHHHH
Confidence 6431 1122222111 11 5677777777777765544
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.47 E-value=0.0011 Score=67.38 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|.+|||||||||+|.|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 489999999999999999999974
No 232
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.38 E-value=0.0024 Score=66.56 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc---------ccchHHHHHHHHhC----C
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----P 200 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d---------~~~~~~l~l~~~~d----~ 200 (609)
...+.+|||||.... +.++..|+++++++|+|+...+.| -.-.++..+...+. .
T Consensus 200 ~~~l~i~Dt~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSE-------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhhh-------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 467899999997543 566778999999999987665522 11223333433332 2
Q ss_pred CCCceEEEecccCcC
Q 007296 201 RGDRTFGVLTKIDLM 215 (609)
Q Consensus 201 ~~~rti~VltK~D~~ 215 (609)
.+.++|+|+||+|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 468999999999986
No 233
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.33 E-value=0.013 Score=59.18 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKID 213 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D 213 (609)
.+++.|+||||.... .......+..+.. .+ .++.+++++.. .. .+++...++.+.+.-...-+|+||+|
T Consensus 180 ~~D~viiDtpp~~~~-----d~~~~~~l~~~~~-~~-~~~~~~lv~~~-~~---~~~~~~~~~~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 180 ARDLILVDTAGRLQI-----DEPLMGELARLKE-VL-GPDEVLLVLDA-MT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp TCCEEEEECCCCSSC-----CHHHHHHHHHHHH-HH-CCSEEEEEEEG-GG---THHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred CCCEEEEeCCCCccc-----cHHHHHHHHHHhh-hc-CCCEEEEEEeC-CC---cHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 358999999996542 1112222222222 12 57777665543 32 24555555555433223456899999
Q ss_pred cCCCCCcHHHHHh
Q 007296 214 LMDKGTDAVDILE 226 (609)
Q Consensus 214 ~~~~~~~~~~~l~ 226 (609)
....+..+..+..
T Consensus 249 ~~~~~g~~~~~~~ 261 (295)
T 1ls1_A 249 GDARGGAALSARH 261 (295)
T ss_dssp GCSSCHHHHHHHH
T ss_pred CCccHHHHHHHHH
Confidence 8766555555543
No 234
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=95.75 E-value=0.0038 Score=63.97 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecC---------CCcccchHHHHHHHHhCC----
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPA---------NQDLATSDAIKISREVDP---- 200 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a---------~~d~~~~~~l~l~~~~d~---- 200 (609)
...+.+|||+|..+. +.++..|.++++++|+|+.-+ +..-.-.+++.+...+..
T Consensus 166 ~v~l~iwDtgGQe~~-------------R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSE-------------RRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHHH-------------HTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchhH-------------HHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 467899999997543 667889999999999987432 111112344444444432
Q ss_pred CCCceEEEecccCcCC
Q 007296 201 RGDRTFGVLTKIDLMD 216 (609)
Q Consensus 201 ~~~rti~VltK~D~~~ 216 (609)
.+.++++++||+|+.+
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 4689999999999864
No 235
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.48 E-value=0.011 Score=60.85 Aligned_cols=70 Identities=21% Similarity=0.361 Sum_probs=48.5
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCC---------CcccchHHHHHHHHh----CC
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPAN---------QDLATSDAIKISREV----DP 200 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~---------~d~~~~~~l~l~~~~----d~ 200 (609)
...+.+|||+|..+. +.++..|.++++++|+|++.+. ..-...++..+...+ ..
T Consensus 160 ~v~l~iwDtaGQe~~-------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGGQRSE-------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCSCHHH-------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCCcccc-------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 468999999996543 7889999999999999876542 111122333333332 23
Q ss_pred CCCceEEEecccCcCC
Q 007296 201 RGDRTFGVLTKIDLMD 216 (609)
Q Consensus 201 ~~~rti~VltK~D~~~ 216 (609)
.+.++|+|+||+|+..
T Consensus 227 ~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSEEEEEEECHHHHH
T ss_pred CCCeEEEEEECchhhh
Confidence 4689999999999864
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.29 E-value=0.06 Score=50.38 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=38.1
Q ss_pred CCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCC--CCCceEEEeccc
Q 007296 135 VNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP--RGDRTFGVLTKI 212 (609)
Q Consensus 135 ~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~--~~~rti~VltK~ 212 (609)
.++.|||+||... ..+...+..+|.+|+++.+...+......++.++.+.. .+.+..+|+|++
T Consensus 76 yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 76 YDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp SSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 5899999998652 12334556688887776554333111222233333321 134668899999
Q ss_pred CcC
Q 007296 213 DLM 215 (609)
Q Consensus 213 D~~ 215 (609)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 853
No 237
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.24 E-value=0.012 Score=62.67 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~ 55 (609)
.+-.|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 46678899999999999999765
No 238
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.14 E-value=0.0063 Score=61.72 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=46.8
Q ss_pred HHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCC-c-HHHHHhccccccCCceeeEee
Q 007296 164 MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGT-D-AVDILEGKSYKLRYPWIGVVN 241 (609)
Q Consensus 164 ~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~-~-~~~~l~~~~~~l~~g~~~v~~ 241 (609)
+.+.|++++|.+++|++..+.+......-++...+...+.+.++|+||+|+.++.. . ..+... ....++..++.+++
T Consensus 72 l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~-~~~~~g~~~~~~SA 150 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWIS-IYRDAGYDVLKVSA 150 (302)
T ss_dssp EETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHH-HHHHTTCEEEECCT
T ss_pred HhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHH-HHHHCCCeEEEEEC
Confidence 44468999999988765443333333211222233335789999999999986431 0 111111 11122334555555
Q ss_pred CChhhhcccc
Q 007296 242 RSQADINKSV 251 (609)
Q Consensus 242 ~s~~~i~~~~ 251 (609)
.++.++++++
T Consensus 151 ~~g~gi~~L~ 160 (302)
T 2yv5_A 151 KTGEGIDELV 160 (302)
T ss_dssp TTCTTHHHHH
T ss_pred CCCCCHHHHH
Confidence 5556665443
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.06 E-value=0.0082 Score=56.80 Aligned_cols=37 Identities=19% Similarity=0.408 Sum_probs=27.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCCcCc----cccccccccc
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKDFLP----RGSGIVTRRP 71 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~~lP----~~~~~~Tr~p 71 (609)
.-..|+++|+++||||||+++|.+. +| .+...+||-|
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~--~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ--NPEKFVYPVPYTTRPP 58 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH--CTTTEECCCCEECSCC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh--CCccEEeeecccccCC
Confidence 4557899999999999999999975 33 2333456655
No 240
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=94.75 E-value=0.019 Score=60.42 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc---------ccchHHHHHHHHhC----C
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD---------LATSDAIKISREVD----P 200 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d---------~~~~~~l~l~~~~d----~ 200 (609)
...+.+|||+|..+. +.++..|+++++++|+|++..+.| -.-.++..+...+. .
T Consensus 216 ~v~l~iwDtaGQe~~-------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRDE-------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhhh-------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 367899999997654 556788999999999987655411 11223344444332 2
Q ss_pred CCCceEEEecccCcC
Q 007296 201 RGDRTFGVLTKIDLM 215 (609)
Q Consensus 201 ~~~rti~VltK~D~~ 215 (609)
.+.++|+|+||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 467899999999985
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.72 E-value=0.011 Score=55.46 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=26.0
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC--cCccccccccccc
Q 007296 37 IAVVGGQSSGKSSVLESVVGKD--FLPRGSGIVTRRP 71 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~~--~lP~~~~~~Tr~p 71 (609)
|+|+|+++||||||+++|.... -+......+||-|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999997541 1233445566666
No 242
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.71 E-value=0.049 Score=54.46 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=48.3
Q ss_pred HHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCC--cHHHHHhccccccCCceeeE
Q 007296 162 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGT--DAVDILEGKSYKLRYPWIGV 239 (609)
Q Consensus 162 ~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~~v 239 (609)
...+..+++.+|+|+.+++ +........ ..+.+.+ .+++.++|+||+|+.+... .+.++++ ..+..++.+
T Consensus 14 ~~~~~~~l~~aDvVl~VvD-Ar~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~~~~~~~----~~g~~~i~i 85 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVD-ARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADAAVTQQWKEHFE----NQGIRSLSI 85 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEE-TTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCHHHHHHHHHHHH----TTTCCEEEC
T ss_pred HHHHHHHHhhCCEEEEEEe-CCCCCccCC-HHHHHHH--CCCCEEEEEECcccCCHHHHHHHHHHHH----hcCCcEEEE
Confidence 4567788999999988664 444433321 1233333 4689999999999987421 1233322 112233444
Q ss_pred eeCChhhhcccccHHH
Q 007296 240 VNRSQADINKSVDMIA 255 (609)
Q Consensus 240 ~~~s~~~i~~~~~~~~ 255 (609)
++.++.+++++.....
T Consensus 86 SA~~~~gi~~L~~~i~ 101 (282)
T 1puj_A 86 NSVNGQGLNQIVPASK 101 (282)
T ss_dssp CTTTCTTGGGHHHHHH
T ss_pred ECCCcccHHHHHHHHH
Confidence 4444555555444333
No 243
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.54 E-value=0.022 Score=58.98 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|.+|||||||+|+|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 79999999999999999999974
No 244
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.47 E-value=0.019 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|+.+||||||++.|.|..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 368999999999999999999974
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.015 Score=53.87 Aligned_cols=23 Identities=13% Similarity=0.499 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+|+|+++||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999985
No 246
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.40 E-value=0.015 Score=60.15 Aligned_cols=70 Identities=14% Similarity=0.087 Sum_probs=46.3
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCC---------CcccchHHHHHHHHhC----C
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPAN---------QDLATSDAIKISREVD----P 200 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~---------~d~~~~~~l~l~~~~d----~ 200 (609)
...+.+|||+|..+. +.+...|+++++++|+|++-.. ..-.-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQe~~-------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG-------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh-------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 457899999997654 5567889999999999875431 1111233333443332 2
Q ss_pred CCCceEEEecccCcCC
Q 007296 201 RGDRTFGVLTKIDLMD 216 (609)
Q Consensus 201 ~~~rti~VltK~D~~~ 216 (609)
.+.++|+|+||+|+.+
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 4689999999999853
No 247
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.39 E-value=0.019 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999974
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.34 E-value=0.016 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..++|+|+.+||||||++.|.|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999984
No 249
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.32 E-value=0.018 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|+.+||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.30 E-value=0.021 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-..|+++|+++||||||++.|.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999986
No 251
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.30 E-value=0.024 Score=57.26 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDF 59 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~ 59 (609)
-.++++|.+|||||||||+|.|...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4789999999999999999999753
No 252
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.25 E-value=0.026 Score=55.99 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999974
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.23 E-value=0.022 Score=56.14 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 254
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.22 E-value=0.028 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.21 E-value=0.023 Score=54.41 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 256
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.20 E-value=0.021 Score=58.56 Aligned_cols=30 Identities=30% Similarity=0.661 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~ 67 (609)
.++|+|+.+||||||+++|.|. +|...|.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~--~~~~~g~i 202 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF--IPKEERII 202 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG--SCTTSCEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC--CcCCCcEE
Confidence 6899999999999999999996 34444543
No 257
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.19 E-value=0.032 Score=58.09 Aligned_cols=118 Identities=11% Similarity=0.065 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCc---HHHHHhccccccCC-
Q 007296 159 QDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD---AVDILEGKSYKLRY- 234 (609)
Q Consensus 159 ~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~- 234 (609)
+.+.++...|.+.++.+++|++..+.+ ..+...++++.. +.++++|+||+|+.+.... ..+.+.......+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~---~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~ 132 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFN---GSWLPGLHRFVG-NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLK 132 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHH---HHCCTTHHHHSS-SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCc---ccHHHHHHHHhC-CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCC
Confidence 445778888888888887766543311 222222333322 6899999999999875432 22222211112222
Q ss_pred --ceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCcc--ccccChHHHHHHHHH
Q 007296 235 --PWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHL--TDRMGSEYLGKVLSK 288 (609)
Q Consensus 235 --g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~--~~~~g~~~L~~~L~~ 288 (609)
.++.+++.++.+++++...+.... .... -.+ ....|.+.|.+.|..
T Consensus 133 ~~~v~~iSA~~g~gi~~L~~~l~~~~------~~~~--i~~vG~~nvGKStliN~L~~ 182 (368)
T 3h2y_A 133 PEDVFLISAAKGQGIAELADAIEYYR------GGKD--VYVVGCTNVGKSTFINRMIK 182 (368)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH------TTSC--EEEEEBTTSSHHHHHHHHHH
T ss_pred cccEEEEeCCCCcCHHHHHhhhhhhc------ccce--EEEecCCCCChhHHHHHHHh
Confidence 345556666677776655444321 1110 011 245788777666643
No 258
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.17 E-value=0.023 Score=56.66 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999973
No 259
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.15 E-value=0.023 Score=59.00 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=25.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCCcCccccccc
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~ 67 (609)
-.++|+|+.+||||||+++|.|. +|...|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I 206 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE--IPFDQRLI 206 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT--SCTTSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--CCCCceEE
Confidence 37999999999999999999996 44444543
No 260
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.13 E-value=0.019 Score=54.45 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|+.+||||||++.|.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999996
No 261
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.10 E-value=0.024 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+++|.++||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999996
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.10 E-value=0.025 Score=56.05 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999973
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.07 E-value=0.026 Score=55.16 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|+.+||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999974
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.06 E-value=0.026 Score=54.68 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999973
No 265
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.93 E-value=0.028 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.93 E-value=0.026 Score=55.00 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999973
No 267
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.91 E-value=0.025 Score=61.55 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=25.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
.|+|+|+++|||||++++|+|. +|.+.+++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3899999999999999999995 566656544
No 268
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.90 E-value=0.026 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.++|+|..|||||||+++|.+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999975
No 269
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.87 E-value=0.031 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999974
No 270
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.86 E-value=0.023 Score=53.39 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|+++|+.+||||||++.|.|.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999986
No 271
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.84 E-value=0.03 Score=55.27 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999974
No 272
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.83 E-value=0.023 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
--.|+|+|.++||||||++.|.|.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 447899999999999999999986
No 273
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.80 E-value=0.024 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
--.++|+|+.+||||||++.|.|..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999999963
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.79 E-value=0.03 Score=55.42 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 68899999999999999999973
No 275
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.75 E-value=0.031 Score=55.02 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=25.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
.++++|+.+||||||++.|+|.. |..+|-++
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~ 63 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIE 63 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS--CCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEEE
Confidence 68899999999999999999973 44445444
No 276
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.67 E-value=0.035 Score=55.22 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999974
No 277
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.66 E-value=0.03 Score=54.93 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|+.+||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.63 E-value=0.027 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|+.+||||||++.|.|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999985
No 279
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.61 E-value=0.027 Score=54.00 Aligned_cols=22 Identities=14% Similarity=0.513 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++|+|+.+||||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999995
No 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.61 E-value=0.036 Score=55.38 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999974
No 281
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.58 E-value=0.035 Score=55.06 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999974
No 282
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.32 E-value=0.03 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|||+.+||||||++.|.|..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 78999999999999999999964
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.29 E-value=0.038 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++|+|+.+||||||++.|+|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999997
No 284
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.17 E-value=0.13 Score=48.91 Aligned_cols=96 Identities=11% Similarity=0.133 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhcCCceEEEEEecCCCcccc-hHHH-HHHHHhCC----CCCceEEEeccc-CcCCCCCcHHHHHhcc-cc
Q 007296 159 QDIENMVRSYIEKPNCIILAISPANQDLAT-SDAI-KISREVDP----RGDRTFGVLTKI-DLMDKGTDAVDILEGK-SY 230 (609)
Q Consensus 159 ~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~-~~~l-~l~~~~d~----~~~rti~VltK~-D~~~~~~~~~~~l~~~-~~ 230 (609)
..++.++++|.++.|+||+||+++..+... .+.+ ++.+.+++ .+.+.++..||. |+...- ...++.+.. ..
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am-s~~EI~e~L~L~ 191 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-PCFYLAHELHLN 191 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC-CHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC-CHHHHHHHcCCc
Confidence 346889999999999999998877553322 1111 11222222 467888888996 563322 233332211 11
Q ss_pred ccCCceee--EeeCChhhhcccccHHH
Q 007296 231 KLRYPWIG--VVNRSQADINKSVDMIA 255 (609)
Q Consensus 231 ~l~~g~~~--v~~~s~~~i~~~~~~~~ 255 (609)
.+...|+. +.+.+++|+.++++++.
T Consensus 192 ~l~R~W~Iq~csA~TGeGL~EGLdWL~ 218 (227)
T 3l82_B 192 LLNHPWLVQDTEAETLTGFLNGIEWIL 218 (227)
T ss_dssp GGCSCEEEEEEETTTCTTHHHHHHHHT
T ss_pred CCCCCEEEEEeECCCCcCHHHHHHHHH
Confidence 22456764 55667788887776654
No 285
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.16 E-value=0.044 Score=50.23 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.++++|.++||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 689999999999999998664
No 286
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.11 E-value=0.031 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.613 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-..|+|+|.++|||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999764
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.00 E-value=0.052 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999974
No 288
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.95 E-value=0.063 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.++++|.+|||||||+|+|. .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 468999999999999999999 5
No 289
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.94 E-value=0.023 Score=52.47 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.+.|+|+|..+||||||++.|.|.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999986
No 290
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.93 E-value=0.04 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|.++||||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 291
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.88 E-value=0.042 Score=49.89 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|+.+||||||++.|.|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999996
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.87 E-value=0.053 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+||||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999974
No 293
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.85 E-value=0.041 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|+.+||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 294
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.76 E-value=0.075 Score=48.82 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 6 TLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 6 ~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.+++.++..+.++... .-.-++++|++++|||||+.++.|.
T Consensus 21 ~~~~~~~~~~~~~~~~-----------~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPE-----------EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHSCCGG-----------GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-----------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4555566555554421 2346899999999999999999885
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.76 E-value=0.043 Score=54.22 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.++|+|+.+|||||++++|.|.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 36899999999999999999995
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.75 E-value=0.046 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
..|+++|.++|||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999863
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.71 E-value=0.045 Score=55.35 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.++|+|+.+||||||++.|.|.
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 47899999999999999999985
No 298
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.67 E-value=0.056 Score=56.27 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCCCc---HHHHHhccccccCC--
Q 007296 160 DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKGTD---AVDILEGKSYKLRY-- 234 (609)
Q Consensus 160 ~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~~~---~~~~l~~~~~~l~~-- 234 (609)
.++++...|...++.++++++..+.+..... .+.+.+. +.++++|+||+|+.+.... ..+.+.......+.
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~--~l~~~l~--~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~ 135 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIP--GLPRFAA--DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCP 135 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETTCSGGGCCS--SHHHHCT--TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHhhccCcEEEEEEECCCCCCchhh--HHHHHhC--CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCc
Confidence 3467778888888888887665443211111 1223332 6899999999999876432 22222211112222
Q ss_pred -ceeeEeeCChhhhcccccHHHHHHHHHHHhccCCCCCcc-ccccChHHHHHHHHHH
Q 007296 235 -PWIGVVNRSQADINKSVDMIAARRREHEYFKNSPEYGHL-TDRMGSEYLGKVLSKH 289 (609)
Q Consensus 235 -g~~~v~~~s~~~i~~~~~~~~~~~~E~~ff~~~~~~~~~-~~~~g~~~L~~~L~~~ 289 (609)
.++.+++.++.+++++...+.... .....+ -. ....|.+.|-+.|...
T Consensus 136 ~~v~~iSA~~g~gi~~L~~~I~~~~------~~~~i~-~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 136 VDVCLVSAAKGIGMAKVMEAINRYR------EGGDVY-VVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SEEEECBTTTTBTHHHHHHHHHHHH------TTSCEE-EECCTTSSHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc------ccCcEE-EEcCCCCchHHHHHHHHhh
Confidence 234555555666666555443321 111000 00 2467887777666544
No 299
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.47 E-value=0.056 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|+|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68899999999999999999973
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.47 E-value=0.069 Score=51.95 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhh---CCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVV---GKD 58 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~---g~~ 58 (609)
...|+|+|.++|||||+++.|. |..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3589999999999999999999 875
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.44 E-value=0.045 Score=52.12 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=24.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
.++++|+.+||||||++.|+|. - |. +|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~-p~-~G~I~ 53 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-A-LQ-SKQVS 53 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-H-HH-TTSCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC-C-Cc-CCeee
Confidence 5899999999999999999997 2 43 35443
No 302
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.41 E-value=0.051 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|.++||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 303
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.38 E-value=0.053 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+++|.++|||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.20 E-value=0.076 Score=47.91 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCCHHHHHHHh
Q 007296 35 PSIAVVGGQSSGKSSVLESV 54 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal 54 (609)
+.|+|+|.++|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 305
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.16 E-value=0.077 Score=52.49 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 306
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.15 E-value=0.067 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999974
No 307
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.06 E-value=0.074 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|+.+||||||++.|.|..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 368999999999999999999974
No 308
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.05 E-value=0.075 Score=55.03 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68899999999999999999974
No 309
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.05 E-value=0.074 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68899999999999999999974
No 310
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.02 E-value=0.083 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|+|.++|||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.99 E-value=0.091 Score=48.25 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.|+|+|.++||||||+++|.+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999999874
No 312
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.96 E-value=0.078 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999974
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.93 E-value=0.06 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|+|+|.++||||||++.|.|.
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhh
Confidence 36889999999999999999996
No 314
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.92 E-value=0.06 Score=51.28 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=23.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSG 65 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~ 65 (609)
.++|+|+++||||||+..|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 689999999999999999998543344433
No 315
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.91 E-value=0.079 Score=55.17 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68999999999999999999974
No 316
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.89 E-value=0.066 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-..|+++|.++|||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 346999999999999999998753
No 317
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.87 E-value=0.074 Score=53.85 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 165 VRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 165 v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
++..+.+.|.+++++.....+.......+++..+...+.+.++|+||+|+.++.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 334688999887765443344444332234433445689999999999998763
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.78 E-value=0.054 Score=52.13 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhh-CC
Q 007296 35 PSIAVVGGQSSGKSSVLESVV-GK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~-g~ 57 (609)
..|+++|+.+||||||++.|. |.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999999 86
No 319
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.78 E-value=0.067 Score=50.12 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++++|..+||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999985
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.72 E-value=0.065 Score=49.27 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-...+|+|+.+||||||++||.+.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999875
No 321
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.69 E-value=0.086 Score=54.86 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999999974
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.62 E-value=0.078 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|.++|||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 323
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.60 E-value=0.069 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|+.+|||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999986
No 324
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.55 E-value=0.09 Score=54.79 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999999974
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.44 E-value=0.078 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.137 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-..|+++|.++|||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999885
No 326
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.28 E-value=0.2 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-..|+|+|.++||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 327
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.22 E-value=0.073 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999999974
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.14 E-value=0.11 Score=50.91 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhh---CCCc
Q 007296 34 LPSIAVVGGQSSGKSSVLESVV---GKDF 59 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~---g~~~ 59 (609)
-..|+|+|..+|||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 4589999999999999999999 8754
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.99 E-value=0.11 Score=48.68 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+++|.++|||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.94 E-value=0.091 Score=49.24 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|+|.++|||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.92 E-value=0.08 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=22.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|..|||||||++.|.|..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999973
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.82 E-value=0.095 Score=50.97 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|+.+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 333
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.78 E-value=0.069 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999974
No 334
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.73 E-value=0.12 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~ 55 (609)
-+..+|+|+.+|||||+++||.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999986
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.71 E-value=0.13 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+++|.++|||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999863
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.68 E-value=0.12 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+|+|.++|||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999985
No 337
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.66 E-value=0.1 Score=48.83 Aligned_cols=24 Identities=46% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
...|+++|.++|||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
No 338
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.56 E-value=0.13 Score=46.82 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 339
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.46 E-value=0.078 Score=53.95 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+|.++|+|..+|||||||+.|.|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999863
No 340
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.42 E-value=0.1 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|+.+|||||++++|.|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999995
No 341
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.36 E-value=0.1 Score=46.75 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-..++++|++++|||+|++++.|.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999985
No 342
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.29 E-value=0.11 Score=55.05 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|+|+|+.+|||||+|++|+|.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 343
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.14 E-value=0.11 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|+|+|..+||||||++.|.|.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999985
No 344
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.06 E-value=0.13 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-..|+++|.++|||||+..+|.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 345
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.00 E-value=0.15 Score=46.38 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-|+++|.++|||||+.++|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999863
No 346
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.00 E-value=0.12 Score=48.67 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-..|+|+|.++|||||+++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999874
No 347
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.95 E-value=0.12 Score=49.74 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.++++|+.+||||||+..|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999994
No 348
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.85 E-value=0.13 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|+|+|..+|||||+++.|.|.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999985
No 349
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.85 E-value=0.31 Score=50.16 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 1 MDNLITLVNKIQRACTALGDHGEESALPTLWDSLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 1 ~~~l~~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
|-++-.+++++-+.++..-..+ ..|.|+++|.+++||||+..+|.+.
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g----------~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDN----------YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTC----------SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccC----------CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445566666665554332221 4688999999999999999998864
No 350
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.81 E-value=0.14 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 78999999999999999999963
No 351
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.76 E-value=0.15 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.288 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|+|.++|||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 352
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.72 E-value=0.16 Score=46.60 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|.|.++|||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 353
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.70 E-value=0.12 Score=50.92 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCC
Q 007296 162 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDK 217 (609)
Q Consensus 162 ~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~ 217 (609)
...+...++++|.+|.+++ +..+...... .+. +- +++.++|+||+|+.+.
T Consensus 12 ~~~~~~~l~~~D~vl~VvD-ar~P~~~~~~-~l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRD-ARAPFATSAY-GVD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp THHHHHHHTTCSEEEEEEE-TTSTTTTSCT-TSC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEEEee-CCCCCcCcCh-HHH--hc--CCCcEEEEECccCCCH
Confidence 3456788999999988664 4433332211 111 22 7899999999999875
No 354
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.70 E-value=0.19 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~ 55 (609)
.+.|+++|.++|||||+...|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999996
No 355
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.61 E-value=0.13 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.-+.++|+|+.+||||||++.|+|..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45899999999999999999999974
No 356
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.47 E-value=0.2 Score=46.25 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-+.|+++|.++|||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999653
No 357
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=89.39 E-value=0.49 Score=47.16 Aligned_cols=95 Identities=8% Similarity=0.117 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCceEEEEEecCCCcccc-hHHH----HHHHHh-CCCCCceEEEecc-cCcCCCCCcHHHHHhcc-cccc
Q 007296 161 IENMVRSYIEKPNCIILAISPANQDLAT-SDAI----KISREV-DPRGDRTFGVLTK-IDLMDKGTDAVDILEGK-SYKL 232 (609)
Q Consensus 161 i~~~v~~yi~~~~~iIL~v~~a~~d~~~-~~~l----~l~~~~-d~~~~rti~VltK-~D~~~~~~~~~~~l~~~-~~~l 232 (609)
++.++++|.++.|+||+||+++..+-.. .+.+ .+..+- ...+.+.++..|| -|+...- ...++.+.. ...+
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am-s~~EI~e~L~L~~l 278 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-PCFYLAHELHLNLL 278 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC-CHHHHHHHTTGGGG
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC-CHHHHHHHcCCccC
Confidence 4889999999999999988776554222 2211 122221 1357788888897 4774332 233332211 1112
Q ss_pred CCcee--eEeeCChhhhcccccHHHH
Q 007296 233 RYPWI--GVVNRSQADINKSVDMIAA 256 (609)
Q Consensus 233 ~~g~~--~v~~~s~~~i~~~~~~~~~ 256 (609)
...|+ ++.+.+++|+.++++++..
T Consensus 279 ~r~W~Iq~csA~tGeGL~EGldWL~~ 304 (312)
T 3l2o_B 279 NHPWLVQDTEAETLTGFLNGIEWILE 304 (312)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHHH
T ss_pred CCcEEEEecccCCCcCHHHHHHHHHH
Confidence 45665 4566778888888877654
No 358
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.30 E-value=0.15 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|+++||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.23 E-value=0.19 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
+.|+++|.++|||||+...|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 360
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.17 E-value=0.2 Score=55.33 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.16 E-value=0.19 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
|.|+++|.++|||||+-..|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999988853
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=89.11 E-value=0.18 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 363
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.00 E-value=0.16 Score=56.12 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+++||+.+||||||++.|.|..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999974
No 364
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.00 E-value=0.25 Score=53.99 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
.++|+|..+||||||++.|+|.. |...|.++
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~ 344 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIE 344 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCeEEE
Confidence 68899999999999999999973 43445443
No 365
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.97 E-value=0.24 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 366
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.91 E-value=0.24 Score=54.14 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=24.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIV 67 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~ 67 (609)
.++|+|..+||||||++.|+|.. +...|.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~--~p~~G~i 325 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI--TADEGSV 325 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CCSBCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CCCCcEE
Confidence 68899999999999999999974 4344544
No 367
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.90 E-value=0.24 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~ 55 (609)
..+.|+++|.++|||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 368
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.90 E-value=0.21 Score=45.88 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 007296 36 SIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (609)
.|+++|.++|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 369
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.79 E-value=0.15 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++|+|+.+|||||||++|.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999999963
No 370
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.77 E-value=0.22 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g 56 (609)
.-+-.+|+|+.+|||||+|++|+.
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999983
No 371
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.77 E-value=0.18 Score=55.76 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+++||+.+||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999974
No 372
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.70 E-value=0.21 Score=46.67 Aligned_cols=22 Identities=36% Similarity=0.241 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|.|.++|||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 373
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.69 E-value=0.18 Score=55.98 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999974
No 374
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.66 E-value=0.19 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+++||+.+||||||++.|.|..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 78999999999999999999974
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.62 E-value=0.22 Score=46.40 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|.++|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.57 E-value=0.24 Score=46.80 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+|.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999953
No 377
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.51 E-value=0.21 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999974
No 378
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.51 E-value=0.23 Score=45.82 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
.+.|+++|.++|||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 379
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.36 E-value=0.29 Score=54.26 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=24.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCCcCcccccccc
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVT 68 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~~lP~~~~~~T 68 (609)
.++|+|..+||||||++.|+|.. +-..|.++
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~ 414 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVE 414 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS--CCSBSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CCCceEEE
Confidence 68899999999999999999973 33345443
No 380
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.23 E-value=0.32 Score=53.97 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+|||||||+.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999974
No 381
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.20 E-value=0.55 Score=42.49 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-+-++++|++++|||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999764
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.20 E-value=0.2 Score=45.78 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|+++|.++|||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 383
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.14 E-value=0.26 Score=46.52 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.12 E-value=0.25 Score=45.65 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 385
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.10 E-value=0.32 Score=45.31 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.6
Q ss_pred CCC-eEEEEcCCCCCHHHHHHHhhC
Q 007296 33 SLP-SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP-~IvVvG~~ssGKSSllnal~g 56 (609)
..| .|+++|.++|||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345 789999999999999999864
No 386
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.05 E-value=0.2 Score=49.68 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 007296 37 IAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~ 57 (609)
++++|++++|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999985
No 387
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.03 E-value=0.2 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
-++++|++++|||||+++|.|.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999985
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=87.96 E-value=0.27 Score=44.42 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
+.|+++|.++|||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 389
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.93 E-value=0.3 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.+||||||++.|.|..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999974
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.80 E-value=0.22 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++|+|+++||||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999965
No 391
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.74 E-value=0.12 Score=48.54 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+|+|.++|||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 392
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=87.62 E-value=0.28 Score=45.14 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-..|+++|.++|||||+.+.|.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.60 E-value=0.37 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.190 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-..|+|.|.++|||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 394
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.55 E-value=0.28 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.52 E-value=0.29 Score=45.27 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
.+.|+++|.++|||||+...|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=87.39 E-value=0.27 Score=46.14 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|+|.++|||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 397
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.38 E-value=0.29 Score=44.96 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+++|.++|||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998863
No 398
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.37 E-value=0.22 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.++|+|++++|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6889999999999999999986
No 399
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.30 E-value=2.8 Score=44.36 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-|.+.|+||+|||++..|+.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999864
No 400
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.26 E-value=0.33 Score=43.65 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 401
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.25 E-value=0.29 Score=46.10 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHhh
Q 007296 34 LPSIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~ 55 (609)
-+-.+|+|+.+|||||+++||.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999999986
No 402
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.06 E-value=0.26 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-..|+++|.++|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 403
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.02 E-value=0.32 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
...|+++|.++|||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999973
No 404
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.89 E-value=0.31 Score=53.32 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+++||+.+||||||++.|+|..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999974
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.74 E-value=0.34 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 406
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.61 E-value=0.72 Score=45.96 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
-|+++|.+||||||+..+|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999974
No 407
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.45 E-value=0.28 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHhhCC
Q 007296 37 IAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~ 57 (609)
|+++|++++|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 408
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.42 E-value=0.31 Score=49.71 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
...++++|++++|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 567999999999999999999985
No 409
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.36 E-value=0.4 Score=44.65 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
|.|+|.|.++|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.35 E-value=0.35 Score=45.64 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 411
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.32 E-value=0.34 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
...|+|+|.++|||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=86.31 E-value=0.34 Score=44.42 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
+.|+++|.++|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999863
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.29 E-value=0.35 Score=45.74 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|+|.++|||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 414
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=86.10 E-value=0.41 Score=44.62 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
...|+|+|.++|||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999873
No 415
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.09 E-value=0.41 Score=45.35 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-..|+++|.++|||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 416
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=85.87 E-value=0.36 Score=44.78 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
...|+|+|.++|||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999854
No 417
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=85.77 E-value=0.29 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-..|++.|.++|||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999863
No 418
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.77 E-value=0.31 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.|+++|++++|||||+.+|.|.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37899999999999999999973
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.57 E-value=0.49 Score=47.83 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-|-|+|+|+++||||+|...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 467899999999999999999753
No 420
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.55 E-value=0.46 Score=52.65 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHhhCCC
Q 007296 37 IAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 37 IvVvG~~ssGKSSllnal~g~~ 58 (609)
++|+|..+||||||++.|+|..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 7999999999999999999974
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.42 E-value=0.35 Score=45.58 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|.++|||||+...|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 422
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.35 E-value=0.077 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|+.+|||||||++|.|..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 35789999999999999999963
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.21 E-value=0.36 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
-.++++|++++|||||+..|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999987
No 424
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.14 E-value=0.64 Score=43.15 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|.+++.|++++|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 455999999999999999999753
No 425
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.06 E-value=0.47 Score=45.22 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 426
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.06 E-value=0.36 Score=47.13 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
+-|+|+|.++||||||-.+|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999975
No 427
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.03 E-value=1 Score=43.50 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-..|++.|.++|||||+...|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999963
No 428
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.92 E-value=0.88 Score=46.73 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|.++|.|++++||||+++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999875
No 429
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.90 E-value=0.38 Score=46.03 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.++++|++++|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999999984
No 430
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.70 E-value=0.83 Score=49.34 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-eEEEEcCCCCCHHHHHHHhhCC
Q 007296 6 TLVNKIQRACTALGDHGEESALPTLWDSLP-SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 6 ~~~~~lq~~~~~~~~~~~~~~~~~~~~~lP-~IvVvG~~ssGKSSllnal~g~ 57 (609)
+...+|+++...++... .+......+| -|.++|++++|||+|+++|.|.
T Consensus 38 ~~k~~l~~lv~~l~~~~---~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 38 EAKEELKEIVEFLKNPS---RFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHHHHHCGG---GTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhchh---hhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45556666655554321 1111112333 4999999999999999999875
No 431
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=84.61 E-value=0.42 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-+-.+|+|+.+|||||+++||..
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999853
No 432
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.52 E-value=0.51 Score=42.48 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g 56 (609)
....|++.|.++|||||+-..|..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999853
No 433
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.40 E-value=0.6 Score=42.14 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-+-|++.|++++|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998754
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=84.36 E-value=0.39 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=22.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|+.+||||||++.|+|..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999974
No 435
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=84.10 E-value=3.9 Score=47.56 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHh
Q 007296 36 SIAVVGGQSSGKSSVLESV 54 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal 54 (609)
.++|+|+.++||||+|+.+
T Consensus 664 i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 436
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.05 E-value=0.42 Score=48.72 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.+.++|++|+||||++.+|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999884
No 437
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=83.94 E-value=0.35 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|+|..|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999974
No 438
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=83.92 E-value=0.53 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|++.|.++|||||+++.|.+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 439
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=83.84 E-value=0.77 Score=46.85 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
+-|+|+|+++||||+|-..|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 440
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.83 E-value=0.42 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
-.++++|+.+||||||++.|.|..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 378999999999999999999963
No 441
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=83.76 E-value=19 Score=36.88 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=48.0
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCc-ccchHHHHHHHHhCCCCCceEEEeccc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQD-LATSDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d-~~~~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..++.+||||.-.. ..+...+..+|.+|+++.+.... ....++....+.+... .+.-+|.|+.
T Consensus 259 ~yD~VIID~p~~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~l~~~~~~l~~l~~~-~~~~vv~N~~ 322 (373)
T 3fkq_A 259 NYDEIIVDLPFSLE---------------IEKLKLLSKAWRIIVVNDGSQLSNYKFMRAYESVVLLEQN-DDINIIRNMN 322 (373)
T ss_dssp CCSEEEEECCCCCC---------------HHHHHHHTTCSEEEEEECCCHHHHHHHHHHHHHHHHHTTS-TTCCCGGGEE
T ss_pred CCCEEEEeCCCCCC---------------HHHHHHHHHCCEEEEEecCCchHHHHHHHHHHHHHHhccc-CCcEEEehhH
Confidence 45899999985332 12455678899888776553322 1134555666666653 3333334544
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCCh
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRSQ 244 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 244 (609)
+..+.-.. .........++.+.+..+.+.
T Consensus 323 ~v~~~~~~---~~~~fl~~~~l~~lG~IP~D~ 351 (373)
T 3fkq_A 323 MIYNKFSN---KNSEMLSNISIKTIGGAPRYE 351 (373)
T ss_dssp EEECSCCT---TTCCCCCSCSCEEEEECCCCT
T ss_pred HHHHHHHH---HHHHHhhcCCccceeecCCCC
Confidence 44333221 111011134566666666653
No 442
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.71 E-value=0.57 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
...|+++|.++|||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999853
No 443
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.68 E-value=0.49 Score=57.49 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++|||+.+||||||++.|.|..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 78999999999999999999964
No 444
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.62 E-value=0.61 Score=44.65 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
...|+++|.++|||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 445
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.53 E-value=0.39 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|+++|.++|||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 446
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.47 E-value=0.44 Score=57.86 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.|+|||+.|||||||++.|.|..
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 68999999999999999999964
No 447
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.42 E-value=0.59 Score=43.66 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g 56 (609)
.-..|+++|..+|||||+-+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 448
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=83.40 E-value=0.5 Score=49.99 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~~ 58 (609)
...+|+|+.++|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 468999999999999999999864
No 449
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=83.33 E-value=0.46 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
+-...+++|+.++||||++++|.+.
T Consensus 25 ~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 25 PEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCChhHHHHHHHHh
Confidence 3457899999999999999999864
No 450
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=82.98 E-value=0.56 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+++||+.+||||||++.|.|..
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 451
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.83 E-value=0.48 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-+..+++|+.+|||||||+||...
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHT
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999853
No 452
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=82.56 E-value=1.8 Score=39.94 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
+-|++.|++++|||+|+.++.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67899999999999999999864
No 453
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.40 E-value=0.74 Score=44.43 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|+|.++|||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 454
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=82.36 E-value=0.59 Score=48.42 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhh
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~ 55 (609)
+-+-.+++|+.+|||||+|+||.
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34678999999999999999985
No 455
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.33 E-value=0.85 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.+|.+.+.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4677999999999999999999875
No 456
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.27 E-value=0.52 Score=46.57 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.++|+|++++|||||+..+++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=82.23 E-value=0.6 Score=44.80 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g 56 (609)
.-..|+|+|.++|||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999999975
No 458
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=82.18 E-value=0.22 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-..++++|..+|||||||++|.+.
T Consensus 60 ~G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 60 GGFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SSEEEEEESHHHHHHHHTHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999775
No 459
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.13 E-value=0.67 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
+.|+|+|+++||||+|...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4678899999999999999974
No 460
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.00 E-value=0.57 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
-|+++|++++|||++..+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 461
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.85 E-value=0.8 Score=43.33 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-+-+++.|++++|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999764
No 462
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.61 E-value=0.71 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 463
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.53 E-value=0.56 Score=48.36 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=29.2
Q ss_pred hcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceEEEecccCcCCCC
Q 007296 169 IEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTFGVLTKIDLMDKG 218 (609)
Q Consensus 169 i~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti~VltK~D~~~~~ 218 (609)
+.+.|.++++ ++...+......-+++......+.+.++|+||+|+.+..
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 5788988754 454433333222122222223478899999999998754
No 464
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=81.42 E-value=0.7 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g 56 (609)
..|.+.|+|.++||||++|++|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 469999999999999999999875
No 465
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.40 E-value=1.4 Score=38.53 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
-|.+.|++++|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3889999999999999999764
No 466
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=81.30 E-value=0.76 Score=44.58 Aligned_cols=22 Identities=50% Similarity=0.594 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+|.|.++|||||+-+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 467
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=81.11 E-value=5.7 Score=38.43 Aligned_cols=89 Identities=10% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccc-hHHHHHHHHhCCCCCceEEEeccc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPRGDRTFGVLTKI 212 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~-~~~l~l~~~~d~~~~rti~VltK~ 212 (609)
..++.|||+|+-.. ..+...+..+|.+|+++.+....... ....+.++.+.+ +.+..+|+|+.
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNL-FLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTC-CCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhc-cCCEEEEEecc
Confidence 35899999998542 12445566799888877664332211 112233333432 34677999999
Q ss_pred CcCCCCCcHHHHHhccccccCCceeeEeeCC
Q 007296 213 DLMDKGTDAVDILEGKSYKLRYPWIGVVNRS 243 (609)
Q Consensus 213 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 243 (609)
+......+..+.+.. ...+.++.+.+
T Consensus 208 ~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 208 KKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp CTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred cCcchHHHHHHHHhc-----CcccceecCcH
Confidence 543333344555542 34555555543
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.06 E-value=0.87 Score=43.00 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+++|+|+|||+|.-..|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998854
No 469
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.70 E-value=1.4 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
.+-+.+.|++|+|||++..++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 567999999999999999999753
No 470
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=80.52 E-value=0.97 Score=44.80 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 007296 36 SIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (609)
.|+|+|.++|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999997
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=80.44 E-value=0.77 Score=43.41 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.+++.|++|+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999998888865
No 472
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=79.82 E-value=2.4 Score=37.06 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
-|.+.|++++|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3889999999999999999754
No 473
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.55 E-value=1.7 Score=42.58 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.-+.+.|++|+|||++..++.+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999764
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=79.38 E-value=0.51 Score=51.69 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+++|..+||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 6889999999999999999986
No 475
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=79.09 E-value=1.1 Score=42.70 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
+-|+|+|+|+|||+|.-..|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34667899999999999988753
No 476
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=78.64 E-value=5.4 Score=38.60 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=37.8
Q ss_pred CCCcEEEeCCCCccccCCCCccchHHHHHHHHHHhhcCCceEEEEEecCCCcccchHHHHHHHHhCCCCCceE-EEeccc
Q 007296 134 VVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPRGDRTF-GVLTKI 212 (609)
Q Consensus 134 ~~~ltlvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iIL~v~~a~~d~~~~~~l~l~~~~d~~~~rti-~VltK~ 212 (609)
..+++|||+||-... ..+....+..+|.+|+++.+... +........+.+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~-------------~~~~~~~~~~aD~viiv~~~~~~--s~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGD-------------APLTVMQDAKPTGVVVVSTPQEL--TAVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSS-------------HHHHHHHHHCCSEEEEEECSSSC--CHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCch-------------HHHHHHhhccCCeEEEEecCccc--hHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 458999999985431 01111112257888776655332 23334444554545567777 678998
Q ss_pred Cc
Q 007296 213 DL 214 (609)
Q Consensus 213 D~ 214 (609)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 85
No 477
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.53 E-value=0.85 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
....|+|.|..+|||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999754
No 478
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=78.50 E-value=1.7 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
-|.++|++++|||+|..++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 479
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=78.25 E-value=1.1 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+++||..+||||||++.|.|..
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 78999999999999999999974
No 480
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=78.05 E-value=1.3 Score=41.62 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
+-++|.|++++|||+++.++...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999753
No 481
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=77.46 E-value=1.3 Score=41.66 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.-|+++|++++|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999865
No 482
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=77.30 E-value=0.97 Score=52.65 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.++++|+.|||||||++.|.|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999643
No 483
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.24 E-value=1.4 Score=42.78 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
-|.+.|++|+|||++..+|.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999999863
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=77.09 E-value=1.2 Score=42.89 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|++.|..+|||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 485
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.08 E-value=1.8 Score=43.25 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
.-|.+.|++|+|||++..+|.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999874
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=77.06 E-value=1.2 Score=46.97 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
...|+++|.++|||||+...|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999999999974
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.88 E-value=1.2 Score=45.42 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHhhCC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g~ 57 (609)
+.|+|+|+++||||||-..|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 47999999999999999998753
No 488
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.86 E-value=1.4 Score=43.96 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=19.6
Q ss_pred CCCeEE-EEcCCCCCHHHHHHHhhC
Q 007296 33 SLPSIA-VVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP~Iv-VvG~~ssGKSSllnal~g 56 (609)
..|..+ +.|+||+|||+|..+|..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 566555 459999999999999974
No 489
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=76.72 E-value=0.98 Score=50.73 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHhh
Q 007296 36 SIAVVGGQSSGKSSVLESVV 55 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~ 55 (609)
.++|+|+.+||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999999875
No 490
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=76.46 E-value=0.82 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=17.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g 56 (609)
-+.|+|.|..+||||||.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 491
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=76.40 E-value=1.2 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=18.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhC
Q 007296 36 SIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g 56 (609)
.++|+|++++|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999777654
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.25 E-value=1.3 Score=46.05 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.-+.++|+|.++||||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999753
No 493
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.24 E-value=1.9 Score=43.53 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..|.+.+.|++|+|||+++.++.+.
T Consensus 57 ~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 57 NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3566999999999999999999875
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=76.15 E-value=1 Score=46.20 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHhhCCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGKD 58 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~~ 58 (609)
.+.|+|+++||||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999999864
No 495
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=75.83 E-value=1.4 Score=47.17 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHhhCC
Q 007296 36 SIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 36 ~IvVvG~~ssGKSSllnal~g~ 57 (609)
.|+++|.++|||||+.+.|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999754
No 496
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.71 E-value=3.6 Score=39.49 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-+-|.+.|++|+|||++..++.+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999753
No 497
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=75.39 E-value=1.4 Score=48.18 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g 56 (609)
..|.+.|+|.++||||++|++|+.
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~ 236 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLL 236 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHH
Confidence 369999999999999999999875
No 498
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.35 E-value=1.2 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 34 LPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 34 lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
-.-|.+.|++|+|||++..++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 499
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=75.16 E-value=2.8 Score=42.18 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHhhCC
Q 007296 33 SLPSIAVVGGQSSGKSSVLESVVGK 57 (609)
Q Consensus 33 ~lP~IvVvG~~ssGKSSllnal~g~ 57 (609)
..+.|.+.|++|+|||++..++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3567999999999999999999653
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=74.85 E-value=1.6 Score=41.03 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHhhC
Q 007296 35 PSIAVVGGQSSGKSSVLESVVG 56 (609)
Q Consensus 35 P~IvVvG~~ssGKSSllnal~g 56 (609)
..|+++|.++|||||+...|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
Done!