Your job contains 1 sequence.
>007298
MVAKPEEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGN
LDPSSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDL
NSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHV
DAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWD
AVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQL
YVIERWLNKYQILYPKGPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEVPVKVI
KNSSKSKKGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSE
KCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEA
YAEEEEKREAEEKKRREAQATSRWYQLLSSIVTRQRLNNCYGNNSTSQSSSNFQNVKKTN
SNVGVDSSQNDWQSPNQVDRGDTKLHAPSPFQSEEHEHVYLIEDQSFDEENSVTTKRCHC
GFTIQVEEL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007298
(609 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2174160 - symbol:RAD4 species:3702 "Arabidopsi... 1484 3.4e-154 2
UNIPROTKB|E2RCR3 - symbol:XPC "Uncharacterized protein" s... 448 3.5e-55 3
UNIPROTKB|E1BDJ1 - symbol:XPC "Uncharacterized protein" s... 447 1.4e-53 3
UNIPROTKB|F1N806 - symbol:Gga.54220 "Uncharacterized prot... 442 1.7e-52 2
UNIPROTKB|E1BUG1 - symbol:Gga.54220 "Uncharacterized prot... 442 3.7e-52 2
UNIPROTKB|F1SPI2 - symbol:XPC "Uncharacterized protein" s... 428 6.2e-51 2
MGI|MGI:103557 - symbol:Xpc "xeroderma pigmentosum, compl... 444 9.1e-46 2
ZFIN|ZDB-GENE-030131-8461 - symbol:xpc "xeroderma pigment... 414 5.9e-45 2
UNIPROTKB|Q01831 - symbol:XPC "DNA repair protein complem... 448 1.3e-44 2
UNIPROTKB|E9PH69 - symbol:XPC "DNA repair protein-complem... 448 1.0e-42 2
RGD|1305760 - symbol:Xpc "xeroderma pigmentosum, compleme... 442 1.1e-40 1
FB|FBgn0004698 - symbol:mus210 "mutagen-sensitive 210" sp... 405 1.8e-36 2
ASPGD|ASPL0000010029 - symbol:AN3890 species:162425 "Emer... 328 2.3e-26 1
DICTYBASE|DDB_G0292296 - symbol:xpc "DNA repair protein R... 304 1.1e-23 1
WB|WBGene00022296 - symbol:xpc-1 species:6239 "Caenorhabd... 283 1.4e-22 2
POMBASE|SPAC12B10.12c - symbol:rhp41 "DNA repair protein ... 286 4.8e-22 1
POMBASE|SPCC4G3.10c - symbol:rhp42 "DNA repair protein Rh... 251 4.3e-18 1
ASPGD|ASPL0000008254 - symbol:AN6186 species:162425 "Emer... 198 6.4e-17 2
CGD|CAL0004788 - symbol:orf19.6722 species:5476 "Candida ... 240 7.5e-17 1
SGD|S000000964 - symbol:RAD4 "Protein that recognizes and... 237 1.8e-16 1
UNIPROTKB|G4MUV6 - symbol:MGG_01699 "Uncharacterized prot... 200 4.9e-12 2
CGD|CAL0003720 - symbol:orf19.1310 species:5476 "Candida ... 124 0.00024 1
>TAIR|locus:2174160 [details] [associations]
symbol:RAD4 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
Pfam:PF01841 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009507 GO:GO:0003684 GO:GO:0006289 InterPro:IPR002931
KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135 EMBL:AY062755
EMBL:BT010359 IPI:IPI00534100 RefSeq:NP_001031894.1
RefSeq:NP_197166.2 UniGene:At.27241 ProteinModelPortal:Q8W489
STRING:Q8W489 PaxDb:Q8W489 PRIDE:Q8W489 EnsemblPlants:AT5G16630.1
EnsemblPlants:AT5G16630.2 GeneID:831525 KEGG:ath:AT5G16630
TAIR:At5g16630 HOGENOM:HOG000144515 InParanoid:Q8W489 OMA:QVDVWSE
PhylomeDB:Q8W489 ProtClustDB:CLSN2690169 Genevestigator:Q8W489
Uniprot:Q8W489
Length = 865
Score = 1484 (527.5 bits), Expect = 3.4e-154, Sum P(2) = 3.4e-154
Identities = 322/610 (52%), Positives = 395/610 (64%)
Query: 21 KENVCETSSKGSPECKYSS--PKSNNTQSK-KSPVSCELSSGNLDPSSSMACSDISEACH 77
K + TS+ P+ + S PK +++ K KSP + GN S + + ++ +C
Sbjct: 275 KHGIFRTSTLMVPKQQAISSYPKKSSSHVKNKSPFE-KPQLGNPLGSDQVQDNAVNSSCE 333
Query: 78 P--KEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKK 135
KS +RKGD+EFE Q+ MALSAT +D N SS V K++++
Sbjct: 334 AGMSIKSDGTRRKGDVEFERQIAMALSAT----------AD----NQQSSQVNNTKKVRE 379
Query: 136 IE--SGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKV 193
I S SS S ISTA GS+KV +PL W EVYC+GEN+ GKWVHVDA N +ID EQ +
Sbjct: 380 ITKISNSSSVSDQVISTAFGSKKVDSPLCWLEVYCNGENMDGKWVHVDAVNGMIDAEQNI 439
Query: 194 EAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGA 253
EAAAAACKT LRY+VAFA GAKDVTRRYC KW+ I+SKRV+S WWD VLAPL LESGA
Sbjct: 440 EAAAAACKTVLRYVVAFAAGGAKDVTRRYCTKWHTISSKRVSSVWWDMVLAPLVHLESGA 499
Query: 254 TGD----------LN-VES--SAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQL 300
T D LN V S S+ S R++LEDMEL TRALTE LPTNQQAYK+H++
Sbjct: 500 THDEDIALRNFNGLNPVSSRASSSSSSFGIRSALEDMELATRALTESLPTNQQAYKSHEI 559
Query: 301 YVIERWLNKYQILYPKGPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANEXXXXXX 360
Y IE+WL+K QIL+PKGP+LGFCSGH VYPR+CVQTLKTKERWLR+ LQ+KANE
Sbjct: 560 YAIEKWLHKNQILHPKGPVLGFCSGHPVYPRTCVQTLKTKERWLRDGLQLKANEVPSKIL 619
Query: 361 XXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSE 420
+DFE D + +ELYGKWQ+EPL LP AVNGIVP+NERGQVDVWSE
Sbjct: 620 KRNSKFKKVKDFEDGDNNIKGGSSCMELYGKWQMEPLCLPPAVNGIVPKNERGQVDVWSE 679
Query: 421 KCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEA 480
KCLPPGTVHLR PR+++VAKR ID APAMVGFE+R+G +TP+F+GIVVC EFKDTILEA
Sbjct: 680 KCLPPGTVHLRFPRIFAVAKRFGIDYAPAMVGFEYRSGGATPIFEGIVVCTEFKDTILEA 739
Query: 481 YXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQRLNNCYGXXXXXXXXXXXXXVKKTN 540
Y QA SRWYQLLSSI+TR+RL N Y + N
Sbjct: 740 YAEEQEKKEEEERRRNEAQAASRWYQLLSSILTRERLKNRYANNSNDVEAKSL----EVN 795
Query: 541 SNVGVDSSQNDWQSPNQV-DRGDTKLHAPSPFQSEEHEHVYLIEDQSFDEENSVTTKRCH 599
S V + +V RG+ S + E HEHV+L E+++FDEE SV TKRC
Sbjct: 796 SETVVKAKNVKAPEKQRVAKRGEKSRVRKSRNEDESHEHVFLDEEETFDEETSVKTKRCK 855
Query: 600 CGFTIQVEEL 609
CGF+++VE++
Sbjct: 856 CGFSVEVEQM 865
Score = 41 (19.5 bits), Expect = 3.4e-154, Sum P(2) = 3.4e-154
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 1 MVAKPEEVLASPVKSFSCDKKENVCETSSKGSP 33
MV K + + + P KS S K ++ E G+P
Sbjct: 285 MVPKQQAISSYPKKSSSHVKNKSPFEKPQLGNP 317
>UNIPROTKB|E2RCR3 [details] [associations]
symbol:XPC "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
OMA:MKRFNKE EMBL:AAEX03012049 Ensembl:ENSCAFT00000007204
Uniprot:E2RCR3
Length = 949
Score = 448 (162.8 bits), Expect = 3.5e-55, Sum P(3) = 3.5e-55
Identities = 96/259 (37%), Positives = 139/259 (53%)
Query: 266 SFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCS 324
S + +R ED E + + L +PLPT YKNH LY ++R L KY+ +YP+ ILG+C
Sbjct: 622 SLLVEREKKEDSEFQAKHLGQPLPTVIGTYKNHPLYALKRHLLKYEAIYPETAAILGYCR 681
Query: 325 GHAVYPRSCVQTLKTKERWLREALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVDAR 383
G AVY R CV TL +++ WL++A V+ E + EP+ D+ D
Sbjct: 682 GEAVYSRDCVHTLHSRDTWLKQARVVRLGEVPYKMVKGYSNRARKARLAEPQLQDQND-- 739
Query: 384 GNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLE 443
+ L+GKWQ E + P AV+G VPRNE G V ++ +P G V L LP ++ VA++L+
Sbjct: 740 --LGLFGKWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPVGCVQLNLPNLHRVARKLD 797
Query: 444 IDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSR 503
ID A+ GF+F G S P+ DG +VC E+KD +L A+ +A
Sbjct: 798 IDCVQAITGFDFHKGYSHPITDGYIVCEEYKDVLLAAWENEQALIEKREKEKREKRALGN 857
Query: 504 WYQLLSSIVTRQRLNNCYG 522
W L ++ R+RL YG
Sbjct: 858 WKLLARGLLIRERLKLRYG 876
Score = 127 (49.8 bits), Expect = 3.5e-55, Sum P(3) = 3.5e-55
Identities = 33/97 (34%), Positives = 46/97 (47%)
Query: 155 RKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG 214
RK W EV+C E KWV VD + ++ Q + A K + Y+V G G
Sbjct: 533 RKAAGVDQWLEVFCEQEE---KWVCVDCVHGVVG--QALACYKYATKP-MTYVVGIDGDG 586
Query: 215 A-KDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLREL 249
+ +DVT+RY W K RV++ WW L P + L
Sbjct: 587 SVRDVTQRYDPAWMTATRKCRVDAKWWAETLRPYQSL 623
Score = 52 (23.4 bits), Expect = 3.5e-55, Sum P(3) = 3.5e-55
Identities = 18/74 (24%), Positives = 36/74 (48%)
Query: 70 SDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLP 129
+ + + HP ++ A+ KG E + + E V + DV + + S +VLP
Sbjct: 107 ASVRKKAHPSQREAAVD-KGSCEEDDEEESEDEWEEVEELGEPVPGDVGENAAFSKSVLP 165
Query: 130 VKRLK-KIESGESS 142
VK ++ +IE+ + +
Sbjct: 166 VKPVEIEIETPQQA 179
>UNIPROTKB|E1BDJ1 [details] [associations]
symbol:XPC "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071942 "XPC complex" evidence=IEA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IEA] [GO:0010224 "response
to UV-B" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 KO:K10838 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
CTD:7508 OMA:MKRFNKE EMBL:DAAA02054616 IPI:IPI00702830
RefSeq:NP_001192837.1 UniGene:Bt.45276 Ensembl:ENSBTAT00000009683
GeneID:524274 KEGG:bta:524274 NextBio:20873931 Uniprot:E1BDJ1
Length = 932
Score = 447 (162.4 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 94/257 (36%), Positives = 138/257 (53%)
Query: 268 VADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGH 326
+ DR ED E + + L +PLPT YKNH LY ++R L KY+ +YP+ +LG+C G
Sbjct: 610 LVDREQREDQEFQAKHLDQPLPTVIGTYKNHPLYALKRHLLKYEAIYPETAAVLGYCRGE 669
Query: 327 AVYPRSCVQTLKTKERWLREALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVDARGN 385
AVY R CV TL +++ WL++A V+ E + EP+ +D D
Sbjct: 670 AVYSRDCVHTLHSRDTWLKQARVVRLGEVPYKMVKGYSNRARRARQAEPQLHDYND---- 725
Query: 386 IELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEID 445
+ L+G+WQ E + P AV+G VPRNE G V ++ +P G V L LP ++ VA++L ID
Sbjct: 726 LGLFGRWQTEEYQPPVAVDGKVPRNEFGNVYLFLPSMMPVGCVQLNLPNLHRVARKLNID 785
Query: 446 SAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWY 505
A A+ GF+F G P+ DG VVC E++D +L A+ +A W
Sbjct: 786 CAQAVTGFDFHKGYCHPITDGYVVCEEYRDVLLTAWENEQALIEKKEKEKREKRALGNWK 845
Query: 506 QLLSSIVTRQRLNNCYG 522
L+ ++ R+RL YG
Sbjct: 846 LLVKGLLIRERLKLRYG 862
Score = 120 (47.3 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 31/87 (35%), Positives = 42/87 (48%)
Query: 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGA-KDVTRR 221
W EV+ E KWV VD + ++ Q + A K + Y+V G G +DVT+R
Sbjct: 527 WLEVFLEREE---KWVCVDCVHGVVG--QPLTCYQYATKP-VTYVVGIDGAGCVRDVTQR 580
Query: 222 YCMKWYRIASK-RVNSAWWDAVLAPLR 247
Y W K RV++AWW L P R
Sbjct: 581 YDPAWLTATRKSRVDAAWWAETLRPYR 607
Score = 44 (20.5 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 78 PKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLK-KI 136
P E+ +A KG E + + + V + DV + + S++ LPVK ++ +I
Sbjct: 106 PPER-EAAADKGSCEGDDEEDSEEDWEEVEEVSEPVPGDVGESGAFSASALPVKPVEIEI 164
Query: 137 ESGE 140
E+ E
Sbjct: 165 ETPE 168
>UNIPROTKB|F1N806 [details] [associations]
symbol:Gga.54220 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010224
"response to UV-B" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0071942 "XPC complex" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
EMBL:AADN02014130 IPI:IPI00818722 Ensembl:ENSGALT00000036242
ArrayExpress:F1N806 Uniprot:F1N806
Length = 826
Score = 442 (160.7 bits), Expect = 1.7e-52, Sum P(2) = 1.7e-52
Identities = 98/260 (37%), Positives = 139/260 (53%)
Query: 264 KDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGP-ILGF 322
K FV DR+ E+ E + + +PLPT YKNH LY ++R L KYQ +YP+ ILG+
Sbjct: 501 KSPFV-DRDKKEETEFQVKLQDQPLPTAIGEYKNHPLYALKRHLLKYQAIYPESAAILGY 559
Query: 323 CSGHAVYPRSCVQTLKTKERWLREALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVD 381
C G AVY R CV TL +K+ WL++A V+ E + EP + D+ D
Sbjct: 560 CRGEAVYSRDCVHTLHSKDTWLKQARVVRIGEVPYKMVKGYSNQARKARLAEPANRDKAD 619
Query: 382 ARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKR 441
+ L+G+WQ E + P AV+G VPRNE G V ++ LP G V LRLP + +A++
Sbjct: 620 ----LALFGRWQTEEYQPPIAVDGKVPRNEYGNVYLFLPSMLPIGCVQLRLPNLNRLARK 675
Query: 442 LEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQAT 501
L+ID A A+ GF+F G S V DG VVC E+K+ ++ A+ +A
Sbjct: 676 LDIDCAQAVTGFDFHGGYSHAVTDGYVVCEEYKEVLIAAWENEQAEIEKKEKEKREKRAL 735
Query: 502 SRWYQLLSSIVTRQRLNNCY 521
W L ++ R+RL Y
Sbjct: 736 GNWKLLTKGLLIRERLKQRY 755
Score = 135 (52.6 bits), Expect = 1.7e-52, Sum P(2) = 1.7e-52
Identities = 64/246 (26%), Positives = 104/246 (42%)
Query: 12 PVKSFSCDKKENVCETSSKGSPECKYSS------PKSNNTQSKKSPVSCELSSGNLDPS- 64
P K D+K + E ++ S + K + PK++ + S V + SG+ + S
Sbjct: 271 PCKKAKRDEKSSGSEEDNEESKKTKSAQTERTHKPKNSRWRRVASKVCYKEESGSDEGSV 330
Query: 65 SSMACS-DISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSN 123
S S + S+ ++ + KR+ + M + + TS+S + + L
Sbjct: 331 SDFEISGEESDISDEDFETVSKKRRSSQGAQKSKVMTVKSPKSETSESRLSRN--SLGVE 388
Query: 124 SSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAA 183
KR K I S E + + VG+ + W EV+ E+ +WV VD
Sbjct: 389 PRPHAQRKRNKIISSDEDDGQQM-VRKVVGTDQ------WLEVFLERED---RWVCVDCV 438
Query: 184 NAIIDGEQKVEAAAAACKTSLRYIVAFAGCGA-KDVTRRYCMKWYRIA-SKRVNSAWWDA 241
+ I+ Q + A K L YIV F G+ KDVT+RY W + KRV+ WW+
Sbjct: 439 HGIVGQPQ--QCFTYATKP-LSYIVGFDNDGSVKDVTQRYDPVWMTMTRKKRVDPEWWED 495
Query: 242 VLAPLR 247
L P +
Sbjct: 496 TLQPYK 501
Score = 47 (21.6 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 6 EEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSS 65
++ L +P S KK+++ TS +G E ++PK+ +KK P C+ D S
Sbjct: 231 KQKLTTPCSEKSTSKKQSLSSTS-EGQ-ESSGTTPKA---VAKKCP--CK--KAKRDEKS 281
Query: 66 SMACSDISEACHPKEKSQALKR 87
S + D E+ K KS +R
Sbjct: 282 SGSEEDNEES--KKTKSAQTER 301
>UNIPROTKB|E1BUG1 [details] [associations]
symbol:Gga.54220 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0010224
"response to UV-B" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0071942 "XPC complex" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
OMA:MKRFNKE EMBL:AADN02014130 IPI:IPI00603077
Ensembl:ENSGALT00000010275 ArrayExpress:E1BUG1 Uniprot:E1BUG1
Length = 936
Score = 442 (160.7 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 98/260 (37%), Positives = 139/260 (53%)
Query: 264 KDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGP-ILGF 322
K FV DR+ E+ E + + +PLPT YKNH LY ++R L KYQ +YP+ ILG+
Sbjct: 611 KSPFV-DRDKKEETEFQVKLQDQPLPTAIGEYKNHPLYALKRHLLKYQAIYPESAAILGY 669
Query: 323 CSGHAVYPRSCVQTLKTKERWLREALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVD 381
C G AVY R CV TL +K+ WL++A V+ E + EP + D+ D
Sbjct: 670 CRGEAVYSRDCVHTLHSKDTWLKQARVVRIGEVPYKMVKGYSNQARKARLAEPANRDKAD 729
Query: 382 ARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKR 441
+ L+G+WQ E + P AV+G VPRNE G V ++ LP G V LRLP + +A++
Sbjct: 730 ----LALFGRWQTEEYQPPIAVDGKVPRNEYGNVYLFLPSMLPIGCVQLRLPNLNRLARK 785
Query: 442 LEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQAT 501
L+ID A A+ GF+F G S V DG VVC E+K+ ++ A+ +A
Sbjct: 786 LDIDCAQAVTGFDFHGGYSHAVTDGYVVCEEYKEVLIAAWENEQAEIEKKEKEKREKRAL 845
Query: 502 SRWYQLLSSIVTRQRLNNCY 521
W L ++ R+RL Y
Sbjct: 846 GNWKLLTKGLLIRERLKQRY 865
Score = 135 (52.6 bits), Expect = 3.7e-52, Sum P(2) = 3.7e-52
Identities = 64/246 (26%), Positives = 104/246 (42%)
Query: 12 PVKSFSCDKKENVCETSSKGSPECKYSS------PKSNNTQSKKSPVSCELSSGNLDPS- 64
P K D+K + E ++ S + K + PK++ + S V + SG+ + S
Sbjct: 381 PCKKAKRDEKSSGSEEDNEESKKTKSAQTERTHKPKNSRWRRVASKVCYKEESGSDEGSV 440
Query: 65 SSMACS-DISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSN 123
S S + S+ ++ + KR+ + M + + TS+S + + L
Sbjct: 441 SDFEISGEESDISDEDFETVSKKRRSSQGAQKSKVMTVKSPKSETSESRLSRN--SLGVE 498
Query: 124 SSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAA 183
KR K I S E + + VG+ + W EV+ E+ +WV VD
Sbjct: 499 PRPHAQRKRNKIISSDEDDGQQM-VRKVVGTDQ------WLEVFLERED---RWVCVDCV 548
Query: 184 NAIIDGEQKVEAAAAACKTSLRYIVAFAGCGA-KDVTRRYCMKWYRIA-SKRVNSAWWDA 241
+ I+ Q + A K L YIV F G+ KDVT+RY W + KRV+ WW+
Sbjct: 549 HGIVGQPQ--QCFTYATKP-LSYIVGFDNDGSVKDVTQRYDPVWMTMTRKKRVDPEWWED 605
Query: 242 VLAPLR 247
L P +
Sbjct: 606 TLQPYK 611
Score = 47 (21.6 bits), Expect = 6.6e-43, Sum P(2) = 6.6e-43
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 6 EEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSS 65
++ L +P S KK+++ TS +G E ++PK+ +KK P C+ D S
Sbjct: 341 KQKLTTPCSEKSTSKKQSLSSTS-EGQ-ESSGTTPKA---VAKKCP--CK--KAKRDEKS 391
Query: 66 SMACSDISEACHPKEKSQALKR 87
S + D E+ K KS +R
Sbjct: 392 SGSEEDNEES--KKTKSAQTER 411
Score = 44 (20.5 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 41 KSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEM 95
KS NT SK+ V + N + S++ K LKR+ ++ EM
Sbjct: 67 KSANTPSKQKGVKRQAKCHNCKTVFHLFLHKTSDSRKAPRKEIKLKRESPIKKEM 121
>UNIPROTKB|F1SPI2 [details] [associations]
symbol:XPC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071942 "XPC complex" evidence=IEA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IEA] [GO:0010224 "response
to UV-B" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0003684 GO:GO:0003697 GO:GO:0010224 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 KO:K10838 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 InterPro:IPR018026 TIGRFAMs:TIGR00605
CTD:7508 OMA:MKRFNKE EMBL:CU633560 RefSeq:XP_003132441.1
Ensembl:ENSSSCT00000012699 GeneID:100514251 KEGG:ssc:100514251
ArrayExpress:F1SPI2 Uniprot:F1SPI2
Length = 944
Score = 428 (155.7 bits), Expect = 6.2e-51, Sum P(2) = 6.2e-51
Identities = 98/299 (32%), Positives = 147/299 (49%)
Query: 226 WYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALT 285
W R ++R + AW A R+ A + + +R ED E + + L
Sbjct: 583 WVRDVTQRYDPAWMTAT----RKCRVDAVWWAETLRPYRSPLL-EREQREDQEFQAKHLD 637
Query: 286 EPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWL 344
+P+PT YKNH LY ++R L KY+ +YP+ ILG+C G AVY R CV TL +++ WL
Sbjct: 638 QPMPTVIGTYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWL 697
Query: 345 REALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAV 403
++ V+ E + EP+ D D + L+G+WQ E + P AV
Sbjct: 698 KQGRVVRLGEVPYKMVKGYSNRARKARLAEPQLRDHND----LPLFGQWQTEEYQPPVAV 753
Query: 404 NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPV 463
+G VPRNE G V ++ +P G V L LP + VA++L ID A+ GF+F G S P+
Sbjct: 754 DGKVPRNEFGNVYLFLPSMMPVGCVQLNLPNLQRVARKLNIDCVQAITGFDFHKGYSHPI 813
Query: 464 FDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQRLNNCYG 522
DG +VC E++D +L A+ + W L+ ++ R+RL YG
Sbjct: 814 TDGYIVCEEYRDILLAAWENEQALIEKKEKEKKEKRTLGNWKLLVKGLLIRERLRLRYG 872
Score = 138 (53.6 bits), Expect = 6.2e-51, Sum P(2) = 6.2e-51
Identities = 68/247 (27%), Positives = 104/247 (42%)
Query: 14 KSFSCDKKENVCETSSKGSPECKYSS-------PKSNNTQSKKSPVSCELSSGNLDPSSS 66
K+ + KK+ E SS G E K + P + + VS + SG+ D +SS
Sbjct: 389 KAAAATKKQR--EPSSSGEEEGKAAGQQGEARRPARGRRRQAATRVSYKEESGS-DKASS 445
Query: 67 MACSDISEA---CHPKEKSQ-ALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNS 122
+ ++S C E S+ L+R+ L + + S+S S K
Sbjct: 446 SSDFELSSGDSHCPSDEDSEPGLRRQRRAP---GLPRTKAGAK-SDSRSQRGSHPKPPGF 501
Query: 123 NSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDA 182
+++ P +K G TS G A G + G +W EV+C E+ KWV VD
Sbjct: 502 LAASAGPPGSKRK---GGKKTSVRG-EEADGGKVAGVD-HWLEVFCERED---KWVCVDC 553
Query: 183 ANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK-RVNSAWWD 240
+ ++ Q + A K + Y+V G G +DVT+RY W K RV++ WW
Sbjct: 554 VHGVVG--QPLTCYQYATKP-MTYVVGIDGDGWVRDVTQRYDPAWMTATRKCRVDAVWWA 610
Query: 241 AVLAPLR 247
L P R
Sbjct: 611 ETLRPYR 617
>MGI|MGI:103557 [details] [associations]
symbol:Xpc "xeroderma pigmentosum, complementation group C"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0000715 "nucleotide-excision repair, DNA damage
recognition" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281
"DNA repair" evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=ISO;IDA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI]
[GO:0071942 "XPC complex" evidence=ISO] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
MGI:MGI:103557 GO:GO:0005737 GO:GO:0042493 GO:GO:0003684
GO:GO:0003697 GO:GO:0010224 GO:GO:0006289 GO:GO:0031573
GO:GO:0071942 GO:GO:0000715 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 GeneTree:ENSGT00390000005194 InterPro:IPR018026
TIGRFAMs:TIGR00605 CTD:7508 HOGENOM:HOG000124671 HOVERGEN:HBG000407
OMA:MKRFNKE OrthoDB:EOG40CHGQ ChiTaRS:XPC EMBL:U27398 EMBL:AB071144
EMBL:AK004713 EMBL:AK028595 EMBL:AK166981 EMBL:U40005
IPI:IPI00124885 PIR:S70630 RefSeq:NP_033557.2 UniGene:Mm.2806
ProteinModelPortal:P51612 SMR:P51612 IntAct:P51612 STRING:P51612
PhosphoSite:P51612 PaxDb:P51612 PRIDE:P51612
Ensembl:ENSMUST00000032182 GeneID:22591 KEGG:mmu:22591
UCSC:uc009cyd.1 InParanoid:P51612 NextBio:302933 Bgee:P51612
CleanEx:MM_XPC Genevestigator:P51612 GermOnline:ENSMUSG00000030094
Uniprot:P51612
Length = 930
Score = 444 (161.4 bits), Expect = 9.1e-46, Sum P(2) = 9.1e-46
Identities = 102/299 (34%), Positives = 150/299 (50%)
Query: 226 WYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALT 285
W R ++R + AW A R+ A + S + +R ED E + + L
Sbjct: 570 WVRDVTQRYDPAWMTAT----RKCRVDAEWWAETLRPYR-SLLTEREKKEDQEFQAKHLD 624
Query: 286 EPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWL 344
+PLPT+ YKNH LY ++R L K+Q +YP+ +LG+C G AVY R CV TL +++ WL
Sbjct: 625 QPLPTSISTYKNHPLYALKRHLLKFQAIYPETAAVLGYCRGEAVYSRDCVHTLHSRDTWL 684
Query: 345 REALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAV 403
++A V+ E + EP+ +D D + LYG WQ E + P AV
Sbjct: 685 KQARVVRLGEVPYKMVKGFSNRARKARLSEPQLHDHND----LGLYGHWQTEEYQPPIAV 740
Query: 404 NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPV 463
+G VPRNE G V ++ +P G V + LP + VA++L ID A+ GF+F G PV
Sbjct: 741 DGKVPRNEFGNVYLFLPSMMPVGCVQMTLPNLNRVARKLGIDCVQAITGFDFHGGYCHPV 800
Query: 464 FDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQRLNNCYG 522
DG +VC EF+D +L A+ +A W L+ ++ R+RL YG
Sbjct: 801 TDGYIVCEEFRDVLLAAWENEQAIIEKKEKEKKEKRALGNWKLLVRGLLIRERLKLRYG 859
Score = 192 (72.6 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 75/252 (29%), Positives = 101/252 (40%)
Query: 108 TSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVY 167
T + + C + SS+ KR KK+ SG + RK W EVY
Sbjct: 479 TQRGSQC-EPSSFPEASSSSSGCKRGKKVSSGAEE---------MADRKPAGVDQWLEVY 528
Query: 168 CSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKW 226
C + KWV VD + ++ Q V A K + Y+V G +DVT+RY W
Sbjct: 529 CEPQ---AKWVCVDCVHGVVG--QPVACYKYATKP-MTYVVGIDSDGWVRDVTQRYDPAW 582
Query: 227 YRIASK-RVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALT 285
K RV++ WW L P R L + + E AK D L T T
Sbjct: 583 MTATRKCRVDAEWWAETLRPYRSLLTEREKKEDQEFQAKHL---------DQPLPTSIST 633
Query: 286 ---EPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSGHAVYPRSCVQTLKTKER 342
PL A K H L I +LG+C G AVY R CV TL +++
Sbjct: 634 YKNHPL----YALKRHLLKF-------QAIYPETAAVLGYCRGEAVYSRDCVHTLHSRDT 682
Query: 343 WLREALQVKANE 354
WL++A V+ E
Sbjct: 683 WLKQARVVRLGE 694
Score = 72 (30.4 bits), Expect = 9.1e-46, Sum P(2) = 9.1e-46
Identities = 39/154 (25%), Positives = 57/154 (37%)
Query: 17 SCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEAC 76
SC + E E +G P + + + ++S S + +PSS E C
Sbjct: 395 SCSEGEEA-EQKVQGRPHARKRRVAAKVSYKEESESDGAGSGSDFEPSSGEGQHSSDEDC 453
Query: 77 HPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNIC--SDVKDLNSNSSTVLPVKRLK 134
P + Q KR Q A S + T + + C S + +S+SS KR K
Sbjct: 454 EPGPRKQ--KRAS----APQRTKAGSKSASKTQRGSQCEPSSFPEASSSSSGC---KRGK 504
Query: 135 KIESGESSTSCLGISTAVGSRKVGAPLYWAEVYC 168
K+ SG + RK W EVYC
Sbjct: 505 KVSSGAEE---------MADRKPAGVDQWLEVYC 529
Score = 48 (22.0 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 12 PVKSFSCDKKENVCETSSKG---SPECKYSSPKSNN--TQSKKSPVSCELSSG 59
P+KS +++ ETS +G S E +SP+S+N T S++ LS G
Sbjct: 319 PLKSAVTKGRKSSKETSVEGPGGSSELSSNSPESHNKPTTSRRIKEEETLSEG 371
>ZFIN|ZDB-GENE-030131-8461 [details] [associations]
symbol:xpc "xeroderma pigmentosum, complementation
group C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 ZFIN:ZDB-GENE-030131-8461 GO:GO:0005634
GO:GO:0003684 GO:GO:0006289 KO:K10838 PANTHER:PTHR12135
GeneTree:ENSGT00390000005194 CTD:7508 HOVERGEN:HBG000407
OMA:MKRFNKE EMBL:BX784025 IPI:IPI00610110 RefSeq:NP_001038675.1
UniGene:Dr.76635 Ensembl:ENSDART00000058100 GeneID:541386
KEGG:dre:541386 InParanoid:Q1LVE4 NextBio:20879198 Uniprot:Q1LVE4
Length = 879
Score = 414 (150.8 bits), Expect = 5.9e-45, Sum P(2) = 5.9e-45
Identities = 89/254 (35%), Positives = 133/254 (52%)
Query: 270 DRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAV 328
+R ED E++ + L +PLPT+ YKNH LYV++R L KY+ LYP +LG+C G V
Sbjct: 552 ERGQKEDQEMQAKLLDKPLPTSVSEYKNHPLYVLKRHLLKYEALYPATAAVLGYCRGEPV 611
Query: 329 YPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVDARGNIEL 388
Y R CV TL +++ WL+EA V+ E E + D + L
Sbjct: 612 YSRDCVHTLHSRDTWLKEARTVRLGEEPYKMVLGFSNRSRKARMMSEQKNVKD----LAL 667
Query: 389 YGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAP 448
+G WQ E + P AV+G VPRNE G V ++ LP G VH+ LP ++ VA++L ID A
Sbjct: 668 FGTWQTEEYQPPIAVDGKVPRNEFGNVYMFKSCMLPIGCVHVHLPNLHRVARKLNIDCAL 727
Query: 449 AMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLL 508
A+ GF++ G + V DG +VC E ++ + A+ +A + W L+
Sbjct: 728 AVTGFDYHCGFAHAVNDGYIVCEEHEEILKAAWENEQEIQQKKEQEKREKRAVTNWTLLV 787
Query: 509 SSIVTRQRLNNCYG 522
++ ++RL YG
Sbjct: 788 KGLLIKERLKRRYG 801
Score = 103 (41.3 bits), Expect = 5.9e-45, Sum P(2) = 5.9e-45
Identities = 60/256 (23%), Positives = 96/256 (37%)
Query: 28 SSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKSQ---- 83
S K SPE K S P S S + + + + + A PK +
Sbjct: 320 SEKSSPELKVS-PGSKRPSSATAAAKEDRGGKRKKKTGGGGDKEAAGAQKPKNSRRRSVA 378
Query: 84 ---ALKRKGDLEFEMQLEMALSATNVATSKSN-----ICSDVKDLNSNSSTVLPVKRLKK 135
+ K G E E Q E +N S+ + IC K + SS V +R ++
Sbjct: 379 SKVSYKEVGSEEEEEQSEEEFQPSNEDDSEDSDGAVKICRKSKVKSRRSSKVKQEERSEE 438
Query: 136 IESGESSTSC-LGISTAVGSRKVGAPL-YWAEVYCSGENLTGKWVHVDAANAIIDGEQKV 193
E E + +K G W EVY +G+WV VD + G+ ++
Sbjct: 439 EEEEEEEEEEEKEVKKQRRKKKQGKGADEWLEVYLES---SGRWVCVDVDQGV--GQPQL 493
Query: 194 EAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASKR-VNSAWWDAVLAPLR--EL 249
+ A + Y+V G KD+ RY W + +R V+S WW+ + + +
Sbjct: 494 CSDQATLP--ITYVVGLDDEGFMKDLGSRYDPTWLTSSRRRRVDSEWWEETMELYKSPDT 551
Query: 250 ESGATGDLNVESSAKD 265
E G D +++ D
Sbjct: 552 ERGQKEDQEMQAKLLD 567
Score = 59 (25.8 bits), Expect = 2.5e-40, Sum P(2) = 2.5e-40
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 27 TSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEKS 82
T SK +P K SS K+ QS+KS ++S G+ PSS+ A + K+K+
Sbjct: 304 TKSKTTPS-KSSSEKA---QSEKSSPELKVSPGSKRPSSATAAAKEDRGGKRKKKT 355
>UNIPROTKB|Q01831 [details] [associations]
symbol:XPC "DNA repair protein complementing XP-C cells"
species:9606 "Homo sapiens" [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA]
[GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0000405
"bubble DNA binding" evidence=TAS] [GO:0003684 "damaged DNA
binding" evidence=IDA] [GO:0000715 "nucleotide-excision repair, DNA
damage recognition" evidence=IDA;TAS] [GO:0000404 "loop DNA
binding" evidence=TAS] [GO:0071942 "XPC complex" evidence=IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IDA;TAS]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_216 InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005737 GO:GO:0005654 GO:GO:0042493 GO:GO:0003684
GO:GO:0003697 GO:GO:0010224 GO:GO:0000075 GO:GO:0000405
GO:GO:0031573 GO:GO:0000718 GO:GO:0071942 PDB:2A4J PDB:2GGM
PDB:2OBH PDBsum:2A4J PDBsum:2GGM PDBsum:2OBH GO:GO:0000715
GO:GO:0000404 KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135
InterPro:IPR018026 TIGRFAMs:TIGR00605 EMBL:D21089 EMBL:AF261901
EMBL:AF261892 EMBL:AF261893 EMBL:AF261894 EMBL:AF261895
EMBL:AF261896 EMBL:AF261897 EMBL:AF261898 EMBL:AF261899
EMBL:AF261900 EMBL:AY131066 EMBL:AC093495 EMBL:FJ695191
EMBL:FJ695192 EMBL:BC016620 EMBL:AK222844 EMBL:X65024
IPI:IPI00156793 PIR:S44345 RefSeq:NP_001139241.1 RefSeq:NP_004619.3
UniGene:Hs.475538 UniGene:Hs.739296 ProteinModelPortal:Q01831
SMR:Q01831 DIP:DIP-31225N IntAct:Q01831 MINT:MINT-105410
STRING:Q01831 PhosphoSite:Q01831 DMDM:296453081 PaxDb:Q01831
PeptideAtlas:Q01831 PRIDE:Q01831 Ensembl:ENST00000285021
GeneID:7508 KEGG:hsa:7508 UCSC:uc011ave.2 CTD:7508
GeneCards:GC03M014161 HGNC:HGNC:12816 HPA:CAB009932 MIM:278720
MIM:613208 neXtProt:NX_Q01831 Orphanet:276255 PharmGKB:PA37413
HOGENOM:HOG000124671 HOVERGEN:HBG000407 InParanoid:Q01831
OMA:MKRFNKE OrthoDB:EOG40CHGQ ChiTaRS:XPC EvolutionaryTrace:Q01831
GenomeRNAi:7508 NextBio:29391 ArrayExpress:Q01831 Bgee:Q01831
CleanEx:HS_XPC Genevestigator:Q01831 GermOnline:ENSG00000154767
Uniprot:Q01831
Length = 940
Score = 448 (162.8 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 103/299 (34%), Positives = 151/299 (50%)
Query: 226 WYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALT 285
W R ++R + W + R+ A + F+ DR ED+E + + +
Sbjct: 577 WVRDVTQRYDPVW----MTVTRKCRVDAEWWAETLRPYQSPFM-DREKKEDLEFQAKHMD 631
Query: 286 EPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWL 344
+PLPT YKNH LY ++R L KY+ +YP+ ILG+C G AVY R CV TL +++ WL
Sbjct: 632 QPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWL 691
Query: 345 REALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAV 403
++A V+ E + EP+ +E D + L+G WQ E + P AV
Sbjct: 692 KKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREEND----LGLFGYWQTEEYQPPVAV 747
Query: 404 NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPV 463
+G VPRNE G V ++ +P G V L LP ++ VA++L+ID A+ GF+F G S PV
Sbjct: 748 DGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGYSHPV 807
Query: 464 FDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQRLNNCYG 522
DG +VC EFKD +L A+ +A W L ++ R+RL YG
Sbjct: 808 TDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYG 866
Score = 176 (67.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 93/339 (27%), Positives = 141/339 (41%)
Query: 26 ETSSKGSPECKYSSPKSNNTQSK-KSPVSCELSSGNLDPSSSMACSDIS--EACHPK-EK 81
E G + K + + + + + S VS + SG+ D + S + ++S EA P E
Sbjct: 401 EDEGPGDKQEKATQRRPHGRERRVASRVSYKEESGS-DEAGSGSDFELSSGEASDPSDED 459
Query: 82 SQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKD--LNSNSSTVLPVKRLKKIES- 138
S+ K + + A + + S+++ S KD L + SS+ KR KK+ S
Sbjct: 460 SEPGPPK---QRKAPAPQRTKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSD 516
Query: 139 GESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAA 198
GE + R + W EV+C E KWV VD + ++ Q +
Sbjct: 517 GEKAEK----------RSIAGIDQWLEVFCEQEE---KWVCVDCVHGVVG--QPLTCYKY 561
Query: 199 ACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLRELESGATGD 256
A K + Y+V G +DVT+RY W + K RV++ WW L P +
Sbjct: 562 ATKP-MTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQSPFMDREKK 620
Query: 257 LNVESSAKDSFVADRNSLEDMELETR-ALTEPLPTNQQAYKNHQLYVIERWLNKYQILYP 315
++E AK D L T L + P A K H L I
Sbjct: 621 EDLEFQAKHM---------DQPLPTAIGLYKNHPL--YALKRHLL-------KYEAIYPE 662
Query: 316 KGPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANE 354
ILG+C G AVY R CV TL +++ WL++A V+ E
Sbjct: 663 TAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGE 701
Score = 57 (25.1 bits), Expect = 1.3e-44, Sum P(2) = 1.3e-44
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 21 KENVCETSSKGSPECKYSSPK-SNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACH-P 78
K+++ S+G + S P S + +KK + S NL A SD + P
Sbjct: 44 KKSLLSKVSQGKRKRGCSHPGGSADGPAKKKVAKVTVKSENLKVIKDEALSDGDDLRDFP 103
Query: 79 KE--KSQALKRKGDLEFEMQLEMALSATN---VATSKSNICSDVKDLNSNSSTVLPVKRL 133
+ K+ LKR + + E S + V + DV++ + S ++LPVK +
Sbjct: 104 SDLKKAHHLKRGATMNEDSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLPVKPV 163
Query: 134 K-KIESGESS 142
+ +IE+ E +
Sbjct: 164 EIEIETPEQA 173
Score = 38 (18.4 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 74 EACHPKEKSQALKRKGDLEFEMQLEMALSATN 105
E +E+S+ +K LEFE L A+ N
Sbjct: 171 EQAKTRERSEKIK----LEFETYLRRAMKRFN 198
>UNIPROTKB|E9PH69 [details] [associations]
symbol:XPC "DNA repair protein-complementing XP-C cells"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 KO:K10838
PANTHER:PTHR12135 InterPro:IPR018026 TIGRFAMs:TIGR00605
EMBL:AC093495 EMBL:FJ695191 EMBL:FJ695192 RefSeq:NP_001139241.1
UniGene:Hs.475538 UniGene:Hs.739296 GeneID:7508 KEGG:hsa:7508
CTD:7508 HGNC:HGNC:12816 ChiTaRS:XPC GenomeRNAi:7508 NextBio:29391
IPI:IPI00924991 ProteinModelPortal:E9PH69 SMR:E9PH69 PRIDE:E9PH69
Ensembl:ENST00000449060 UCSC:uc011avg.2 ArrayExpress:E9PH69
Bgee:E9PH69 Uniprot:E9PH69
Length = 903
Score = 448 (162.8 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 103/299 (34%), Positives = 151/299 (50%)
Query: 226 WYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALT 285
W R ++R + W + R+ A + F+ DR ED+E + + +
Sbjct: 540 WVRDVTQRYDPVW----MTVTRKCRVDAEWWAETLRPYQSPFM-DREKKEDLEFQAKHMD 594
Query: 286 EPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILGFCSGHAVYPRSCVQTLKTKERWL 344
+PLPT YKNH LY ++R L KY+ +YP+ ILG+C G AVY R CV TL +++ WL
Sbjct: 595 QPLPTAIGLYKNHPLYALKRHLLKYEAIYPETAAILGYCRGEAVYSRDCVHTLHSRDTWL 654
Query: 345 REALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAV 403
++A V+ E + EP+ +E D + L+G WQ E + P AV
Sbjct: 655 KKARVVRLGEVPYKMVKGFSNRARKARLAEPQLREEND----LGLFGYWQTEEYQPPVAV 710
Query: 404 NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPV 463
+G VPRNE G V ++ +P G V L LP ++ VA++L+ID A+ GF+F G S PV
Sbjct: 711 DGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGGYSHPV 770
Query: 464 FDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQRLNNCYG 522
DG +VC EFKD +L A+ +A W L ++ R+RL YG
Sbjct: 771 TDGYIVCEEFKDVLLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYG 829
Score = 176 (67.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 93/339 (27%), Positives = 141/339 (41%)
Query: 26 ETSSKGSPECKYSSPKSNNTQSK-KSPVSCELSSGNLDPSSSMACSDIS--EACHPK-EK 81
E G + K + + + + + S VS + SG+ D + S + ++S EA P E
Sbjct: 364 EDEGPGDKQEKATQRRPHGRERRVASRVSYKEESGS-DEAGSGSDFELSSGEASDPSDED 422
Query: 82 SQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKD--LNSNSSTVLPVKRLKKIES- 138
S+ K + + A + + S+++ S KD L + SS+ KR KK+ S
Sbjct: 423 SEPGPPK---QRKAPAPQRTKAGSKSASRTHRGSHRKDPSLPAASSSSSSSKRGKKMCSD 479
Query: 139 GESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAA 198
GE + R + W EV+C E KWV VD + ++ Q +
Sbjct: 480 GEKAEK----------RSIAGIDQWLEVFCEQEE---KWVCVDCVHGVVG--QPLTCYKY 524
Query: 199 ACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK-RVNSAWWDAVLAPLRELESGATGD 256
A K + Y+V G +DVT+RY W + K RV++ WW L P +
Sbjct: 525 ATKP-MTYVVGIDSDGWVRDVTQRYDPVWMTVTRKCRVDAEWWAETLRPYQSPFMDREKK 583
Query: 257 LNVESSAKDSFVADRNSLEDMELETR-ALTEPLPTNQQAYKNHQLYVIERWLNKYQILYP 315
++E AK D L T L + P A K H L I
Sbjct: 584 EDLEFQAKHM---------DQPLPTAIGLYKNHPL--YALKRHLL-------KYEAIYPE 625
Query: 316 KGPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANE 354
ILG+C G AVY R CV TL +++ WL++A V+ E
Sbjct: 626 TAAILGYCRGEAVYSRDCVHTLHSRDTWLKKARVVRLGE 664
Score = 38 (18.4 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 74 EACHPKEKSQALKRKGDLEFEMQLEMALSATN 105
E +E+S+ +K LEFE L A+ N
Sbjct: 134 EEAKTRERSEKIK----LEFETYLRRAMKRFN 161
>RGD|1305760 [details] [associations]
symbol:Xpc "xeroderma pigmentosum, complementation group C"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=ISO] [GO:0000715 "nucleotide-excision repair,
DNA damage recognition" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IEA;ISO] [GO:0003697 "single-stranded DNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0010224 "response to UV-B" evidence=IEA;ISO]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IEA;ISO]
[GO:0042493 "response to drug" evidence=IEP] [GO:0071942 "XPC
complex" evidence=IEA;ISO] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 RGD:1305760 GO:GO:0005634 GO:GO:0005737
GO:GO:0042493 GO:GO:0003684 GO:GO:0003697 GO:GO:0010224
EMBL:CH473957 GO:GO:0031573 GO:GO:0071942 GO:GO:0000715 KO:K10838
PANTHER:PTHR12135 GeneTree:ENSGT00390000005194 InterPro:IPR018026
TIGRFAMs:TIGR00605 CTD:7508 OMA:MKRFNKE OrthoDB:EOG40CHGQ
IPI:IPI00365175 RefSeq:NP_001101344.1 UniGene:Rn.22820
Ensembl:ENSRNOT00000011490 GeneID:312560 KEGG:rno:312560
UCSC:RGD:1305760 NextBio:664995 Uniprot:D4A3D8
Length = 933
Score = 442 (160.7 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 103/299 (34%), Positives = 151/299 (50%)
Query: 226 WYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALT 285
W R ++R + AW A + E A L S + +R ED E + + L
Sbjct: 571 WVRDVTQRYDPAWMTATRKCRVDAEWWAE-TLRPYRSP----LTEREKKEDQEFQAKHLD 625
Query: 286 EPLPTNQQAYKNHQLYVIERWLNKYQILYPKGP-ILGFCSGHAVYPRSCVQTLKTKERWL 344
+PLPT+ YKNH LY ++R L K+Q +YP+ +LG+C G AVY R CV TL +++ WL
Sbjct: 626 QPLPTSISTYKNHPLYALKRHLLKFQAIYPESAAVLGYCRGEAVYSRDCVHTLHSRDTWL 685
Query: 345 REALQVKANEX-XXXXXXXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAV 403
++A V+ E + EP+ +D D + L+G WQ E + P AV
Sbjct: 686 KQARVVRLGEVPYKMVKGFSNRARKARLSEPQLHDHND----LGLFGHWQTEEYQPPVAV 741
Query: 404 NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPV 463
+G VPRNE G V ++ +P G V + LP ++ VA++L ID A+ GF+F G PV
Sbjct: 742 DGKVPRNEFGNVYLFLPSMMPIGCVQMNLPNLHRVARKLGIDCVQAITGFDFHGGYCHPV 801
Query: 464 FDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQRLNNCYG 522
DG VVC EF+D +L A+ +A W L+ ++ R+RL YG
Sbjct: 802 TDGYVVCEEFRDVLLAAWENEQALIEKKEKEKKEKRALGNWKLLVRGLLIRERLKLRYG 860
Score = 188 (71.2 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 76/236 (32%), Positives = 97/236 (41%)
Query: 124 SSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAA 183
SS+ KR KKI SC G T RK W EV+C + KWV VD
Sbjct: 495 SSSSSACKRGKKI-------SCGGEET--DDRKAAGVDQWLEVFCEPQ---AKWVCVDCV 542
Query: 184 NAIIDGEQKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASK-RVNSAWWDA 241
+ ++ Q V A K + Y+V G +DVT+RY W K RV++ WW
Sbjct: 543 HGVVG--QPVACYKYATKP-MTYVVGIDSDGWVRDVTQRYDPAWMTATRKCRVDAEWWAE 599
Query: 242 VLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALT---EPLPTNQQAYKNH 298
L P R S T E K+ L D L T T PL A K H
Sbjct: 600 TLRPYR---SPLT-----EREKKEDQEFQAKHL-DQPLPTSISTYKNHPL----YALKRH 646
Query: 299 QLYVIERWLNKYQILYPKGPILGFCSGHAVYPRSCVQTLKTKERWLREALQVKANE 354
L I +LG+C G AVY R CV TL +++ WL++A V+ E
Sbjct: 647 LLKF-------QAIYPESAAVLGYCRGEAVYSRDCVHTLHSRDTWLKQARVVRLGE 695
>FB|FBgn0004698 [details] [associations]
symbol:mus210 "mutagen-sensitive 210" species:7227
"Drosophila melanogaster" [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;NAS] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
EMBL:AE013599 GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 KO:K10838
eggNOG:COG5535 PANTHER:PTHR12135 GeneTree:ENSGT00390000005194
InterPro:IPR018026 TIGRFAMs:TIGR00605 EMBL:Z28622 EMBL:AF209743
EMBL:AY070566 PIR:S42402 RefSeq:NP_476861.1 RefSeq:NP_725451.1
UniGene:Dm.637 ProteinModelPortal:Q24595 SMR:Q24595 IntAct:Q24595
STRING:Q24595 PaxDb:Q24595 PRIDE:Q24595 EnsemblMetazoa:FBtr0087374
GeneID:36697 KEGG:dme:Dmel_CG8153 CTD:36697 FlyBase:FBgn0004698
InParanoid:Q24595 OMA:KYLQSFV OrthoDB:EOG4547F1 GenomeRNAi:36697
NextBio:799920 Bgee:Q24595 GermOnline:CG8153 Uniprot:Q24595
Length = 1293
Score = 405 (147.6 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 107/320 (33%), Positives = 149/320 (46%)
Query: 204 LRYIVAFAGCGA-KDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESS 262
L Y+ AF + KDVT RYC W K W L E + G
Sbjct: 996 LAYVFAFQDDQSLKDVTARYCASWSTTVRKARVEKAW------LDETIAPYLG-----RR 1044
Query: 263 AKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK-GPILG 321
K R+ ED +L +PLP + +K+H LYV+ER L K+Q LYP P LG
Sbjct: 1045 TK------RDITEDDQLRRIHSDKPLPKSISEFKDHPLYVLERHLLKFQGLYPPDAPTLG 1098
Query: 322 FCSGHAVYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVD 381
F G AVY R CV L ++E WL+ A VK E +D
Sbjct: 1099 FIRGEAVYSRDCVHLLHSREIWLKSARVVKLGEQPYKVVKARPKWDRLTRTVIKDQP--- 1155
Query: 382 ARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKR 441
+E++G WQ + P+A NGIVPRN G V+++ + LP TVHLRLP + + K+
Sbjct: 1156 ----LEIFGYWQTQEYEPPTAENGIVPRNAYGNVELFKDCMLPKKTVHLRLPGLMRICKK 1211
Query: 442 LEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQAT 501
L ID A A+VGF+F G P++DG +VC EF++ + A+ +
Sbjct: 1212 LNIDCANAVVGFDFHQGACHPMYDGFIVCEEFREVVTAAWEEDQQVQVLKEQEKYETRVY 1271
Query: 502 SRWYQLLSSIVTRQRLNNCY 521
W +L+ ++ R+RL Y
Sbjct: 1272 GNWKKLIKGLLIRERLKKKY 1291
Score = 52 (23.4 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 33/136 (24%), Positives = 53/136 (38%)
Query: 19 DKKENV-CETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACS---DISE 74
DKK E S S K + K+N +++ P+S + G+ S ++S
Sbjct: 545 DKKAGKPAEKESSKSTISKEAEKKNNAKKAEAKPLSKSTTKGSETTKSGTVPKVKKELSL 604
Query: 75 ACHPKEKSQALKR----KGDLEFEMQLEMALSATNVATSKSNICSDVKDLNS--NSSTVL 128
+ EKS+ K K D F+ + + S+ + S + K L +S VL
Sbjct: 605 SSKLVEKSKHQKAYTSSKSDTSFDEKPSTSSSSKCLKEEYSELGLSKKLLKPTLSSKLVL 664
Query: 129 PVKRLKKIESGESSTS 144
K S +S TS
Sbjct: 665 KSKNQSSFSSNKSDTS 680
Score = 48 (22.0 bits), Expect = 4.6e-36, Sum P(2) = 4.6e-36
Identities = 25/102 (24%), Positives = 42/102 (41%)
Query: 46 QSKKSPVSCELSSGNLDPSSSMACSDISEACHPKEK-SQALKRKGDLEFEMQLEMALSAT 104
++K V E S + P +E K S+ ++K + + ++ S T
Sbjct: 525 KNKSQTVESERESEDEKPKKDKKAGKPAEKESSKSTISKEAEKKNNAKKAEAKPLSKSTT 584
Query: 105 NVA-TSKSNICSDVK-DLNSNSSTVLPVKRLKKIESGESSTS 144
+ T+KS VK +L+ +S V K K S +S TS
Sbjct: 585 KGSETTKSGTVPKVKKELSLSSKLVEKSKHQKAYTSSKSDTS 626
Score = 38 (18.4 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 15 SFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPS 64
S S KE + SS + K +SP T+ + S + +++ N+ S
Sbjct: 689 SSSKSLKEETAKLSSSKLEDKKVASPAETKTKVQSSLLK-RVTTQNISES 737
Score = 37 (18.1 bits), Expect = 6.6e-35, Sum P(2) = 6.6e-35
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 20 KKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPK 79
K +N SS S +P ++++ + +LSS L+ + ++ K
Sbjct: 665 KSKNQSSFSSNKSDTSFEENPSTSSSSKSLKEETAKLSSSKLEDKKVASPAETKT----K 720
Query: 80 EKSQALKR 87
+S LKR
Sbjct: 721 VQSSLLKR 728
>ASPGD|ASPL0000010029 [details] [associations]
symbol:AN3890 species:162425 "Emericella nidulans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 EMBL:BN001302 GO:GO:0006289
EMBL:AACD01000062 KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135
OMA:FKGRHGT OrthoDB:EOG4Z0FG0 RefSeq:XP_661494.1
ProteinModelPortal:Q5B6E0 STRING:Q5B6E0
EnsemblFungi:CADANIAT00004811 GeneID:2873313 KEGG:ani:AN3890.2
HOGENOM:HOG000182868 Uniprot:Q5B6E0
Length = 951
Score = 328 (120.5 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 115/424 (27%), Positives = 178/424 (41%)
Query: 113 ICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGI--STAVGSRKVGA----PLYWAEV 166
I SD D ++ ST K G G+ +T + SR + P++W E
Sbjct: 314 ISSDDPDSLTDGSTKSEAKPAPIRRIGRPGFKPTGVQNTTVLSSRPTRSESSYPVFWVEA 373
Query: 167 YCSGENLTGKWVHVDA-ANAIIDGEQKVEAAAAACKTSLRYIVAFA-GCGAKDVTRRYCM 224
+ KWV +D + K+E A L Y+VAF A+DVTRRY
Sbjct: 374 F---NEAFQKWVVIDPMVTKTLAKPHKLEPPATDPYNLLSYVVAFEEDASARDVTRRYT- 429
Query: 225 KWYRIASKRVNSAWWDAVLAPLRELESGATGDL---NVESSAKDSFVADRNSLEDMELET 281
RV ++A LR +ES G+ V + F+ DR+ LE EL
Sbjct: 430 --------RV----FNAKTRKLR-VESTKNGEAWWKRVLEHFEKPFLEDRDELEIAELTA 476
Query: 282 RALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPK---GPI-LGFCSGHA----VYPRSC 333
+ +EP+P N Q +K+H +Y +ER L + ++++PK G + LG G +Y RS
Sbjct: 477 KTASEPMPRNVQDFKDHPIYALERHLRRNEVIFPKRVTGHVSLGKSGGKGQTEPIYRRSD 536
Query: 334 VQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQ 393
V L++ +W R +K E G + E+ E A LY +Q
Sbjct: 537 VHILRSANKWYRLGRDIKVGEQPLKRIPVRNR---GMAVDDEEEGEETA-----LYAFFQ 588
Query: 394 LEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGF 453
E + P V G +P+N G +DV+ +P G +H+ A+ L ID A A+ GF
Sbjct: 589 TELYKPPPVVQGRIPKNAFGNLDVYVPSMVPAGGIHITHLDAARAARILGIDYADAVTGF 648
Query: 454 EFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVT 513
F+ T + G+VV +E+K+ + E + W LL +
Sbjct: 649 SFKGRHGTAIIKGVVVASEYKEAVEEVLKALEEEKLQNEQEERAVEVLRAWKNLLMKLRI 708
Query: 514 RQRL 517
+R+
Sbjct: 709 AERV 712
>DICTYBASE|DDB_G0292296 [details] [associations]
symbol:xpc "DNA repair protein Rad4 family protein"
species:44689 "Dictyostelium discoideum" [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR004583
InterPro:IPR018325 InterPro:IPR018326 InterPro:IPR018327
InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403 Pfam:PF10404
Pfam:PF10405 SMART:SM01031 SMART:SM01032 dictyBase:DDB_G0292296
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003684
EMBL:AAFI02000189 GO:GO:0006289 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 RefSeq:XP_001134493.1 ProteinModelPortal:Q1ZXA6
EnsemblProtists:DDB0232368 GeneID:8628599 KEGG:ddi:DDB_G0292296
InParanoid:Q1ZXA6 OMA:VELFYMV Uniprot:Q1ZXA6
Length = 967
Score = 304 (112.1 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 127/546 (23%), Positives = 233/546 (42%)
Query: 6 EEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSS 65
E +++ P+ S +++++ K + S K+ T SKK + LSS N ++
Sbjct: 459 ELIISKPITS----RQKSIQANQFKNTVLNSKISKKTETTMSKKRKTNSSLSSKNKKKNN 514
Query: 66 SMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSS 125
S + +D + K + + + + + + S ++ SK K L +SS
Sbjct: 515 SDSENDTDNERDSGSDNDDAGDKNNNKSDQEKDNSSSDSDYKDSK-------KKLKRSSS 567
Query: 126 TVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLYWAEVYCSGENLTGKWVHVDAANA 185
+ RL ++ ES T+ + + + + W EV+ ++ KW+ +D N
Sbjct: 568 EPIKRSRLSNLDDKESKTTTTTTTNTLSNNEKVEIESWIEVF---DHEKKKWISIDLINK 624
Query: 186 IIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSA---WW--- 239
ID E Y+VA + KDVT RY + + KR+ A WW
Sbjct: 625 EIDKPLNFEKIL----DPFSYVVAISKYQIKDVTSRYTNNYIGSSLKRLPIAQIKWWLQL 680
Query: 240 --DAVLAPLRE-----------LESGATGDLNVESSAKDSFVADRNSLEDMEL-ETRALT 285
DA+ P L+S +N++ S + +R S+E++++ E + L
Sbjct: 681 VGDAINNPTEVENDNEPVSKFILDSKKIISVNIDLLNNLS-IDERKSIEEIDVYEKQELI 739
Query: 286 --E---PLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILG-FCSGHAVYPRSCVQTLKT 339
E P P++ +K+H ++V+E+ + KY P LG F H +Y + ++ L T
Sbjct: 740 IKESKLPFPSSFAQFKSHPIFVLEKDIAKYCSPDPSSKPLGLFNETHKIYHKDQIKVLHT 799
Query: 340 KERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVDARGNIE--LYGKWQLEPL 397
++W++ V GQ +P + ++ N L+G+WQ + L
Sbjct: 800 SDKWVQNGRMV----------------IEGQ--QPLKIVKGRSKSNPTSMLFGEWQTK-L 840
Query: 398 RLPSAV--NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEF 455
P+ + +GIVP N G V +++ P VHLR + VAK+L I+ APA+ G+E
Sbjct: 841 FEPAVIGKDGIVPTNSFGNVYLFNSSMCPINGVHLRGKGLIRVAKKLGINFAPALTGWEN 900
Query: 456 RNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQ 515
S P+ DG+VV +F +L+ + + +RW + + ++ +
Sbjct: 901 GPKSSYPIIDGVVVAKKFSKKLLDTWLSESSSRAEAELQKKNDEIKARWKRFMKKLLIKN 960
Query: 516 RLNNCY 521
+ Y
Sbjct: 961 YIEKTY 966
>WB|WBGene00022296 [details] [associations]
symbol:xpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
GO:GO:0005634 GO:GO:0003684 GO:GO:0006289 EMBL:FO081666 KO:K10838
eggNOG:COG5535 PANTHER:PTHR12135 GeneTree:ENSGT00390000005194
RefSeq:NP_500156.2 ProteinModelPortal:Q9N4C3 IntAct:Q9N4C3
MINT:MINT-228757 STRING:Q9N4C3 PaxDb:Q9N4C3
EnsemblMetazoa:Y76B12C.2 GeneID:177002 KEGG:cel:CELE_Y76B12C.2
UCSC:Y76B12C.2 CTD:177002 WormBase:Y76B12C.2 InParanoid:Q9N4C3
OMA:YLRQEIN NextBio:894928 Uniprot:Q9N4C3
Length = 1119
Score = 283 (104.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 72/214 (33%), Positives = 106/214 (49%)
Query: 269 ADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPI---LGFCSG 325
++R E M++ + PLPT YKNH LY +E+ L K++ +YP LG G
Sbjct: 812 SERKKWEMMQMREDLVKRPLPTVMSEYKNHPLYALEKDLLKFEAIYPPPATQKPLGQIRG 871
Query: 326 HAVYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVDARGN 385
H VYPRS V TL+ + WL+ A VK E P+ V+ R +
Sbjct: 872 HNVYPRSTVFTLQGENNWLKLARSVKIGEKPYKIVKA----------RPDPRIPVEDRED 921
Query: 386 --IELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLE 443
+++YG WQ E R P NG +P NE G V +++E P +L+L + ++++L
Sbjct: 922 KFLDVYGYWQTEKYRRPPLKNGKIPHNEYGNVYMFNENMCPLDCTYLKLSGLVQISRKLG 981
Query: 444 IDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTI 477
PA+VG+ F G + PV DG +V KD I
Sbjct: 982 KQCIPAVVGWAFDGGFTHPVIDGAIVLE--KDAI 1013
Score = 61 (26.5 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 31/141 (21%), Positives = 60/141 (42%)
Query: 4 KPEEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDP 63
K E ++ S KS + K + E PE + N +S KS + S+ N
Sbjct: 150 KSENLVQSVPKSTTNGSKVAIIEDD----PEIR----AENGVKSSKSDEKPDFSAQN--- 198
Query: 64 SSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSN 123
S +A + + P+ K+ + + QLE++ S++ + +S + D ++
Sbjct: 199 GSKLAQNAPNRISRPRRSVTTAKKVSYVPSDDQLELSSSSSELESSSED--EDT-EIRPK 255
Query: 124 SSTVLPVKRLKKIESGESSTS 144
+ + + KR K + ES +S
Sbjct: 256 TGSKIAKKREKSFKISESESS 276
Score = 58 (25.5 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 10 ASPVKS-FSCDKKENVCETSSKGSPECKYSSPKSNNTQSK 48
ASP+ F+ D K+ +CE S + + +C + T K
Sbjct: 758 ASPISYVFAIDNKQGICEVSQRYAMDCVKQDFRRRRTNPK 797
Score = 43 (20.2 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 26 ETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLDPSSSMACSDISEACHPKE 80
E S E PK+ + +KK S ++S SSS + D SEA E
Sbjct: 240 ELESSSEDEDTEIRPKTGSKIAKKREKSFKISESE---SSSESPDDESEASEASE 291
>POMBASE|SPAC12B10.12c [details] [associations]
symbol:rhp41 "DNA repair protein Rhp41" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005819
"spindle" evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0006298 "mismatch repair" evidence=IGI]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
PomBase:SPAC12B10.12c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0005819 GO:GO:0003684 GO:GO:0006298 GO:GO:0006289
GO:GO:0000109 KO:K10838 eggNOG:COG5535 PANTHER:PTHR12135
OrthoDB:EOG4Z0FG0 PIR:T37579 RefSeq:NP_594644.1
ProteinModelPortal:Q10445 STRING:Q10445
EnsemblFungi:SPAC12B10.12c.1 GeneID:2542967 KEGG:spo:SPAC12B10.12c
OMA:NEASSHE NextBio:20804002 InterPro:IPR018026 TIGRFAMs:TIGR00605
Uniprot:Q10445
Length = 638
Score = 286 (105.7 bits), Expect = 4.8e-22, P = 4.8e-22
Identities = 118/410 (28%), Positives = 175/410 (42%)
Query: 131 KRLKKIESGESSTSCLGISTAVGSR---KV---GAPLYWAEVYCSGENLTGKWVHVDA-A 183
KR K I+ S+ S L S V KV P++W E + KWV VD
Sbjct: 267 KRRKIIQPSFSNLSHLDASDIVTEDTKLKVIDSPKPVFWVEAF---NKAMQKWVCVDPFG 323
Query: 184 NAIIDGE-QKVEAAAAACKTSLRYIVAFAGCG-AKDVTRRYCMKWYRIASKRVN-----S 236
+A + G+ ++ E A++ + Y+ A G KDVTR+YC+ +Y+I RV
Sbjct: 324 DASVIGKYRRFEPASSDHLNQMTYVFAIEANGYVKDVTRKYCLHYYKILKNRVEIFPFGK 383
Query: 237 AWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYK 296
AW + + + + G D F D +++ED EL +E +P N Q K
Sbjct: 384 AWMNRIFSKI-----GKPRD----------FYNDMDAIEDAELLRLEQSEGIPRNIQDLK 428
Query: 297 NHQLYVIERWLNKYQILYPKGPILGFCS---G-HAVYPRSCVQTLKTKERWLREALQVKA 352
+H L+V+ER L K Q + G G + G VYPR V + E W R+ +K
Sbjct: 429 DHPLFVLERHLKKNQAI-KTGKSCGRINTKNGVELVYPRKYVSNGFSAEHWYRKGRIIKP 487
Query: 353 NEXXXXXXXXXXXXXXGQDFEPEDYDEVDARGNIELYGKWQLEPLRLPSAVNGIVPRNER 412
G P YDE +A +LY +P+ V IVP+N
Sbjct: 488 G------AQPLKHVKNGDKVLPL-YDE-EAT---QLYTP---KPV-----VANIVPKNAY 528
Query: 413 GQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCAE 472
G +D++ LP G H R + AK LEID A A+VGF+F+ S P +G+VV
Sbjct: 529 GNIDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAKAVVGFDFQRKYSKPKLEGVVVSKR 588
Query: 473 FKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQLLSSIVTRQRLNNCYG 522
+++ I W +L++ + RQR+ YG
Sbjct: 589 YEEAIDLIAEEIDQEEKEAEARNVRKTCLLLWKRLITGLRIRQRVFEEYG 638
>POMBASE|SPCC4G3.10c [details] [associations]
symbol:rhp42 "DNA repair protein Rhp42" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006298 "mismatch
repair" evidence=IGI] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 PomBase:SPCC4G3.10c GO:GO:0005730
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003684 GO:GO:0006298
GO:GO:0006289 GO:GO:0000109 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 InterPro:IPR018026 TIGRFAMs:TIGR00605 PIR:T41366
RefSeq:NP_587828.1 ProteinModelPortal:P87235 STRING:P87235
EnsemblFungi:SPCC4G3.10c.1 GeneID:2539465 KEGG:spo:SPCC4G3.10c
OMA:YPESETE OrthoDB:EOG4DJP4K NextBio:20800627 Uniprot:P87235
Length = 686
Score = 251 (93.4 bits), Expect = 4.3e-18, P = 4.3e-18
Identities = 101/380 (26%), Positives = 157/380 (41%)
Query: 160 PLYWAEVYCSGENLTGKWVHVDAA--NAIIDGEQK-VEAAAAACKTS-LRY--IVAFAG- 212
P++W E+Y E KW+ VDA N + + E A ++ LR + A+
Sbjct: 323 PIFWTEIYDQSEK---KWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHLRMGIVAAYDND 379
Query: 213 CGAKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRN 272
AKDVT RY Y+ S R+ + + G L + KD+ +
Sbjct: 380 LYAKDVTLRYTD--YQ--SSRLKKIRHVSFADKYFDFYKAIFGQLAKRN--KDA----ED 429
Query: 273 SLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKG-PI--LGFCSG---- 325
E+ ELE++ P + +KNH +V+ R L + + L P P+ F +G
Sbjct: 430 IYEEKELESKVPIRE-PKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTATFGNGKKAT 488
Query: 326 -HAVYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQ---DFEPEDYDEVD 381
VY R V KT E + +E +K E + +F + +E
Sbjct: 489 SEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNEPV 548
Query: 382 ARGNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKR 441
+G LY Q E P +GI+P+N G +D + E +P G HL + +AK+
Sbjct: 549 LQG---LYSSDQTELYVPPPIKDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGIAKIAKK 605
Query: 442 LEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQAT 501
L ID A A+ GFEFR R+ PV GI+V E + E +
Sbjct: 606 LNIDYADAVTGFEFRKHRAIPVTTGIIVPEESAQMVYEEFLECEKIRIEKQQMKERKIIY 665
Query: 502 SRWYQLLSSIVTRQRLNNCY 521
+W LL+++ R+R+ Y
Sbjct: 666 GQWKHLLNALRIRKRIEEQY 685
>ASPGD|ASPL0000008254 [details] [associations]
symbol:AN6186 species:162425 "Emericella nidulans"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01031 SMART:SM01032 GO:GO:0005634
GO:GO:0003684 EMBL:BN001301 GO:GO:0006289 EMBL:AACD01000105
eggNOG:COG5535 PANTHER:PTHR12135 OrthoDB:EOG4DJP4K
RefSeq:XP_663790.1 EnsemblFungi:CADANIAT00006823 GeneID:2871078
KEGG:ani:AN6186.2 HOGENOM:HOG000164138 OMA:IPKNEYG Uniprot:Q5AZU4
Length = 941
Score = 198 (74.8 bits), Expect = 6.4e-17, Sum P(2) = 6.4e-17
Identities = 51/194 (26%), Positives = 84/194 (43%)
Query: 328 VYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVDARGNIE 387
VY RS V +T E W +E + + + E+ +
Sbjct: 582 VYRRSDVVKCQTAESWHKEGREPLPSAKPLKHVPIRAVTLLRKREVDEEARRTGQKPLQG 641
Query: 388 LYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSA 447
LY Q + + P V+GI+P+NE G +D + + +P G VH+ + K+L ID A
Sbjct: 642 LYSFEQTQEIIPPPIVDGIIPKNEYGNIDCFVPRMVPKGAVHIPFSGTARICKKLGIDYA 701
Query: 448 PAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATSRWYQL 507
A+ GFEF + + PV +G+VV AE KD +++A+ + + W +
Sbjct: 702 EAVTGFEFGSQMAVPVIEGVVVAAENKDLVVDAWRADNEEKRRKEARKAEAKILATWRKF 761
Query: 508 LSSIVTRQRLNNCY 521
L + QR+ Y
Sbjct: 762 LFGLRIAQRVQEEY 775
Score = 95 (38.5 bits), Expect = 6.4e-17, Sum P(2) = 6.4e-17
Identities = 54/192 (28%), Positives = 82/192 (42%)
Query: 160 PLYWAEVYCSGENLTGKWVHVDA---ANAIIDGEQKVEAA-------AAACKTSLRYIVA 209
P+YW EV +T + + VD +NA+ Q+++AA A K + Y++A
Sbjct: 384 PIYWTEVVSP---ITHQVISVDPLVLSNAVA-ATQELQAAFEPRGAKAEKAKQVICYVIA 439
Query: 210 F-AGCGAKDVTRRYCMK--W------YRIASKRVNSAWWDAVLAPLRELESGATGDLNVE 260
F A AKDVT RY + W +R+ K + D LR N E
Sbjct: 440 FSADKTAKDVTTRYLRRRTWPGKTKGFRLGKKGPDDDLLDWFRVLLR----------NYE 489
Query: 261 SSAKDSFVADRNSLEDM-ELETRALTEPLPTNQ-----QAYKNHQLYVIERWLNKYQILY 314
KD D +ED +L T+ PTN+ Q+ + +V+ER+L + + L
Sbjct: 490 RPYKDRTAVD--DIEDAKDLVPNRPTKSKPTNETVDTLQSLRTSSEFVLERFLRREEALR 547
Query: 315 PKG-PILGFCSG 325
P P+ F G
Sbjct: 548 PGALPVRTFTPG 559
Score = 49 (22.3 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 6 EEVL---ASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCE 55
EE L A PV++F+ K+ + +P SPK+ N + V C+
Sbjct: 543 EEALRPGALPVRTFTPGGKKKNANGNGASTPT---ESPKAENVYRRSDVVKCQ 592
>CGD|CAL0004788 [details] [associations]
symbol:orf19.6722 species:5476 "Candida albicans" [GO:0000111
"nucleotide-excision repair factor 2 complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA]
InterPro:IPR004583 InterPro:IPR018325 InterPro:IPR018326
InterPro:IPR018327 InterPro:IPR018328 Pfam:PF03835 Pfam:PF10403
Pfam:PF10404 Pfam:PF10405 SMART:SM01030 SMART:SM01031 SMART:SM01032
CGD:CAL0004788 GO:GO:0005634 GO:GO:0003684 GO:GO:0006289
EMBL:AACQ01000029 EMBL:AACQ01000028 KO:K10838 eggNOG:COG5535
PANTHER:PTHR12135 RefSeq:XP_719704.1 RefSeq:XP_719821.1
ProteinModelPortal:Q5ADX0 STRING:Q5ADX0 GeneID:3638462
GeneID:3638600 KEGG:cal:CaO19.14014 KEGG:cal:CaO19.6722
Uniprot:Q5ADX0
Length = 709
Score = 240 (89.5 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 103/388 (26%), Positives = 158/388 (40%)
Query: 160 PLYWAEVYCSGENLTGKWVHVDA-ANAIID--GEQK---VEAAAAACKTSLRYIVAFAGC 213
P++W EV+ T +WV +D +I+ ++K E + L Y+VAF
Sbjct: 281 PVFWVEVW---NKYTRQWVSIDPIVMKLIEVCPKRKKSPFEPPPTDERNQLTYVVAFDKF 337
Query: 214 G-AKDVTRRYCMKWYRIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRN 272
G +DVTRRY Y +K + + E +S L K VAD
Sbjct: 338 GRVRDVTRRYS---YNYNAKTIRKR----IEFRSSEDKSWYLKVLRCCDFKKTQNVAD-- 388
Query: 273 SLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPI--LG-FCSGHA-- 327
E E R L E +P N QA+KNH LY +E L + +I++PK G F S ++
Sbjct: 389 IYEQKEFYDRDLAEGMPNNIQAFKNHPLYALESQLRQDEIIFPKDDTSKCGTFRSKNSSK 448
Query: 328 ---VYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVDARG 384
VY RSCV L++ + W Q+K P E D R
Sbjct: 449 VFQVYKRSCVHRLRSAKAWYMRGRQLKVGAI------------------PLKSKEEDVR- 489
Query: 385 NIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLR------LPRVYSV 438
LY ++Q + P +GIVP+N+ G +DV+++ LP ++ + + + +
Sbjct: 490 ---LYAEFQTQLYIPPPVTDGIVPKNQYGNIDVYTKTMLPENSILIECDENCSMKMLQNA 546
Query: 439 AKRLEIDSAPAMVGFEFRNGRS----TPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXX 494
A L ID A A+V F F+ + T GIV+ E+++ +
Sbjct: 547 ANLLAIDYAKAIVSFSFKGKKKKHNITAREGGIVIAKEYEEAMQLTIDNLIEQEEEDQRA 606
Query: 495 XXXXQATSRWYQLLSSIVTRQRLNNCYG 522
A W L + RLN +G
Sbjct: 607 LSEANALRNWKYFLLKLRLEDRLNKSHG 634
>SGD|S000000964 [details] [associations]
symbol:RAD4 "Protein that recognizes and binds damaged DNA
during NER" species:4932 "Saccharomyces cerevisiae" [GO:0000111
"nucleotide-excision repair factor 2 complex" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;IMP] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01030
SMART:SM01031 SMART:SM01032 SGD:S000000964 GO:GO:0005829
GO:GO:0043161 GO:GO:0003684 EMBL:BK006939 KO:K01530
RefSeq:NP_011093.3 GeneID:856913 KEGG:sce:YER166W GO:GO:0006289
EMBL:U18917 RefSeq:NP_011089.4 GeneID:856909 KEGG:sce:YER162C
KO:K10838 PDB:2QSF PDB:2QSG PDB:2QSH PDBsum:2QSF PDBsum:2QSG
PDBsum:2QSH GO:GO:0000111 eggNOG:COG5535 PANTHER:PTHR12135
EMBL:M26050 EMBL:M24928 PIR:S30814 ProteinModelPortal:P14736
SMR:P14736 DIP:DIP-1547N IntAct:P14736 MINT:MINT-396392
STRING:P14736 PaxDb:P14736 PeptideAtlas:P14736 EnsemblFungi:YER162C
GeneTree:ENSGT00390000005194 HOGENOM:HOG000074544 OMA:FKGRHGT
OrthoDB:EOG4Z0FG0 EvolutionaryTrace:P14736 NextBio:983347
Genevestigator:P14736 GermOnline:YER162C Uniprot:P14736
Length = 754
Score = 237 (88.5 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 94/380 (24%), Positives = 159/380 (41%)
Query: 160 PLYWAEVYCSGENLTGKWVHVDAANA-IIDG---EQKVEAAAAAC--KTSLRYIVAF-AG 212
P++W EV+ + + KW+ VD N I+ K+ AC + LRY++A+
Sbjct: 313 PIFWCEVW---DKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRK 369
Query: 213 CGAKDVTRRYCMKWY--RIASKRVNSAWWDAVLAPLRELESGATGDLNVESSAKDSFVAD 270
G +DVTRRY +W ++ +R+ D R++ + L+ K + D
Sbjct: 370 YGCRDVTRRYA-QWMNSKVRKRRITKD--DFGEKWFRKVITA----LHHRKRTK---IDD 419
Query: 271 RNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILYPKGPILGFCSGHA--- 327
ED R +E +P + Q KNH YV+E+ + + QI+ P G+ H
Sbjct: 420 ---YEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPGCKECGYLKVHGKVG 476
Query: 328 ----VYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEVDAR 383
VY + + LK+ +W +K G+ E ED + + +
Sbjct: 477 KVLKVYAKRDIADLKSARQWYMNGRILKTGSRCKKVIKRTVGRPKGEA-EEED-ERLYSF 534
Query: 384 GNIELYGKWQLEPLRLPSAVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLE 443
+ ELY + PL ++ +G + +N G ++V++ +P + P A+ L
Sbjct: 535 EDTELY----IPPL---ASASGEITKNTFGNIEVFAPTMIPGNCCLVENPVAIKAARFLG 587
Query: 444 IDSAPAMVGFEFRNGRST-PVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXXXXQATS 502
++ APA+ F+F G + PV GIVV ++ I A A
Sbjct: 588 VEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREAIETAIDGIEFIQEDDNRKEHLLGALE 647
Query: 503 RWYQLLSSIVTRQRLNNCYG 522
W LL + R +LN+ YG
Sbjct: 648 SWNTLLLKLRIRSKLNSTYG 667
>UNIPROTKB|G4MUV6 [details] [associations]
symbol:MGG_01699 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01031
SMART:SM01032 GO:GO:0005634 GO:GO:0003684 GO:GO:0043581
EMBL:CM001232 GO:GO:0006289 PANTHER:PTHR12135 RefSeq:XP_003714693.1
ProteinModelPortal:G4MUV6 EnsemblFungi:MGG_01699T0 GeneID:2679173
KEGG:mgr:MGG_01699 Uniprot:G4MUV6
Length = 1045
Score = 200 (75.5 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 67/266 (25%), Positives = 110/266 (41%)
Query: 270 DRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQ-ILYPKGPILGF---CSG 325
D L + E + + E T Q YK + YV+ER L + + +L P+ F G
Sbjct: 599 DSTDLRPAKHEKKEVKEGDETLQY-YKQSKEYVLERHLKREEALLQDATPVKVFKVKAKG 657
Query: 326 -----HAVYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQDFEPEDYDEV 380
VY R V +K+ E W ++ K E + D
Sbjct: 658 GEFTEENVYLRRDVVQVKSAETWHKQGRAPKEGEKPLKMVPYRAATMNRK----RDIAAA 713
Query: 381 DAR-GNIELYGKWQLEPLR--LPSAV-NGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVY 436
+A G L G + ++ +P + +GI+P+NE G +D+++E P G VH+
Sbjct: 714 EAATGKKVLQGLYSMDQTDWIIPPPIKDGIIPKNEYGNIDLFAEHMCPQGAVHVPFRGAV 773
Query: 437 SVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVVCAEFKDTILEAYXXXXXXXXXXXXXXX 496
V +RL +D A A++ FEF + + PV G+V+ E D ++E
Sbjct: 774 KVCRRLGVDYAEAVIDFEFGHRMAVPVIQGVVIAEEHHDRVMEELAKDEAERARKEDAKR 833
Query: 497 XXQATSRWYQLLSSIVTRQRLNNCYG 522
A + W ++L ++ RL YG
Sbjct: 834 TAAALAMWRKMLMAMRITNRLREEYG 859
Score = 47 (21.6 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 20/91 (21%), Positives = 34/91 (37%)
Query: 3 AKPEEVLASPVKSFSCDKKENVCETSSKGSPECKYSSPKSNNTQSKKSPVSCELSSGNLD 62
A PEE +S + + ++K P ++ S +S QSK + +
Sbjct: 378 ADPEEERSSQPSPEKPTQTTQTPQKNTKNEPRRQHVSSRSRGKQSKAIEEEDSNYVDDFE 437
Query: 63 PSSSMACSDISEACHPKEKSQALKRKGDLEF 93
P + ++ K Q+ K DLEF
Sbjct: 438 PQEVNSDDEMVVEVPKKMAPQSKKFDQDLEF 468
Score = 47 (21.6 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 55 ELSSGNLDPSSSMACSDISEACHPKEKSQALKRKGDLEFEMQLEMALSATN 105
E G+ D + D+ + P + A GDLE + L+ +S TN
Sbjct: 99 EDDDGSDDDDDDIEFEDVQASLAPFAEEAA--PSGDLELTLDLDGRISLTN 147
Score = 37 (18.1 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 150 TAVGSRKVGAPLYWA 164
+ GSR VGA L+ A
Sbjct: 336 SCTGSRDVGAQLFTA 350
>CGD|CAL0003720 [details] [associations]
symbol:orf19.1310 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] InterPro:IPR004583 InterPro:IPR018325
InterPro:IPR018326 InterPro:IPR018327 InterPro:IPR018328
Pfam:PF03835 Pfam:PF10403 Pfam:PF10404 Pfam:PF10405 SMART:SM01031
SMART:SM01032 CGD:CAL0003720 GO:GO:0005634 GO:GO:0003684
GO:GO:0006289 EMBL:AACQ01000138 PANTHER:PTHR12135
RefSeq:XP_709951.1 ProteinModelPortal:Q59TQ8 GeneID:3645363
KEGG:cal:CaO19.1310 Uniprot:Q59TQ8
Length = 543
Score = 124 (48.7 bits), Expect = 0.00024, P = 0.00024
Identities = 55/284 (19%), Positives = 117/284 (41%)
Query: 200 CKTSLRYIVAFAGCGA-KDVTRRYCM----KWYRIASKRVNSAWWDAVLAPLRELESGAT 254
C+ S+ Y+++ DV+ RY +W+ R + A+L L+ L
Sbjct: 220 CQMSMHYVLSLNSENLIVDVSSRYMKDISYRWFNRLDLRTDLGK-SALL--LQSL----- 271
Query: 255 GDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIERWLNKYQILY 314
L + + K+ D L+ + ++ + +P A KN ++ L +++
Sbjct: 272 --LRIFNRMKNYTTDDYKELDSL-MQMAMINYTIPETFTAMKNSPNFITPSTLRYNEVIM 328
Query: 315 PKG-PILGFCSGHA---VYPRSCVQTLKTKERWLREALQVKANEXXXXXXXXXXXXXXGQ 370
P P+ + VY ++ + K++++W +K ++ +
Sbjct: 329 PDTKPVKRIKINNKKEPVYFKNSLLVGKSEQQWKFLGRSIKPDQTPIKLAKATPRTIYNK 388
Query: 371 DFEPEDYDEVDARGNIELYGKWQLEP---LRLPSAVNG--IVPRNERGQVDVWSEKCLPP 425
++ ++LY Q P L++ +G I+PRN+ G ++++ E +P
Sbjct: 389 RLYNQNEINDPNLNQVKLYSFSQTCPYIKLKVTKTTDGKLILPRNKYGNIEIFRENMIPD 448
Query: 426 GTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRNGRSTPVFDGIVV 469
V L L + ++ K + P + GF F+ G++ PV G++V
Sbjct: 449 DCVWLELTNIENILKN-KAQFVPVITGFAFKAGQAIPVKQGVIV 491
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 609 565 0.00078 120 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 22
No. of states in DFA: 630 (67 KB)
Total size of DFA: 354 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.73u 0.09s 51.82t Elapsed: 00:00:09
Total cpu time: 51.74u 0.09s 51.83t Elapsed: 00:00:09
Start: Mon May 20 16:53:25 2013 End: Mon May 20 16:53:34 2013