Query 007298
Match_columns 609
No_of_seqs 174 out of 435
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qsf_A RAD4, DNA repair protei 100.0 1.8E-93 6E-98 785.9 22.5 355 81-485 153-531 (533)
2 1x3z_A Peptide: N-glycanase; h 99.8 5.5E-21 1.9E-25 199.0 4.2 144 82-281 175-318 (335)
3 2f4m_A Peptide N-glycanase; gl 99.6 3.4E-16 1.2E-20 161.3 9.5 143 83-280 135-279 (295)
4 3isr_A Transglutaminase-like e 80.8 1.5 5.1E-05 44.9 5.0 22 159-185 213-234 (293)
5 2d3g_P Ubiquitin interacting m 73.0 2.2 7.4E-05 28.7 2.3 20 91-110 3-22 (26)
6 1gh9_A 8.3 kDa protein (gene M 46.3 6.1 0.00021 32.6 1.0 19 591-609 17-35 (71)
7 2jr7_A DPH3 homolog; DESR1, CS 36.2 15 0.0005 31.7 1.8 25 583-607 11-35 (89)
8 1yop_A KTI11P; zinc finger, me 35.4 14 0.00048 31.3 1.6 25 583-607 11-35 (83)
9 1wge_A Hypothetical protein 26 34.3 20 0.00068 30.4 2.3 26 582-607 17-42 (83)
10 1m45_B IQ2, IQ2 motif from MYO 32.1 49 0.0017 21.8 3.3 22 499-520 4-25 (26)
11 2q3z_A Transglutaminase 2; tra 22.8 45 0.0015 38.2 3.2 25 86-113 272-296 (687)
No 1
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=1.8e-93 Score=785.87 Aligned_cols=355 Identities=25% Similarity=0.364 Sum_probs=286.8
Q ss_pred hhhhhhccCcHHHHHHHHHHHHhhhhhhcccCcc--CcccCCCCCCCCcccchhhhhcccCCCCCCCCCCccccCCCCCC
Q 007298 81 KSQALKRKGDLEFEMQLEMALSATNVATSKSNIC--SDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVG 158 (609)
Q Consensus 81 ~~~~~krkgd~~~e~q~~ma~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~~ 158 (609)
.+...+|+|+-++-+||=.|| +++.+..++. +-++.+++......+ + .... ....++.
T Consensus 153 ~~~~~~~~Gs~d~~AqlF~aL---lRalG~~aRlV~SLqP~~f~~~k~~~~-------------~--~k~~--~~~~~~~ 212 (533)
T 2qsf_A 153 LRAVSKGHGDPDISVQGFVAM---LRACNVNARLIMSCQPPDFTNMKIDTS-------------L--NGNN--AYKDMVK 212 (533)
T ss_dssp HHHHHHTEECHHHHHHHHHHH---HHHTTCCEEEEEEECCCCTTCCBSCCC-------------C--C-----CHHHHTT
T ss_pred HHHHHhcCCChhHHHHHHHHH---HHHCCCceEEEeccccccccccccccC-------------c--ccCC--ccccccC
Confidence 456778999999777775555 5666666653 333333322111000 0 0000 1123578
Q ss_pred CCceEEEEEeCCCCCCCceEEEecccc-cc---cCcchhhhhH--HhcCCCceEEEEEcCCC-cccchhhhHhhHH-Hhh
Q 007298 159 APLYWAEVYCSGENLTGKWVHVDAANA-II---DGEQKVEAAA--AACKTSLRYIVAFAGCG-AKDVTRRYCMKWY-RIA 230 (609)
Q Consensus 159 ~P~fWvEVy~~~e~~~~rWI~VDPv~~-~v---d~p~~~Ep~~--~~~~~~msYVVAfd~dG-akDVTrRYa~~~~-k~~ 230 (609)
+|+||+|||++. +++||||||+++ ++ +.+.+|||.. .++.++|+|||||+.|| |+|||+||+.+|. +++
T Consensus 213 ~P~~W~EV~s~~---~~rWi~VDp~~~~~id~~~~~~~~Ep~~~~~~~~~~m~YViAf~~d~~~kDVT~RY~~~~~~k~r 289 (533)
T 2qsf_A 213 YPIFWCEVWDKF---SKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVTRRYAQWMNSKVR 289 (533)
T ss_dssp SCSEEEEEEETT---TTEEEEEESSSSCEEECCSSCCTTSCCSTTTTSSCCCCEEEEECTTCCEEECHHHHCTTCCCCCG
T ss_pred CCeEEEEEEEcC---CCeEEEEeccccccccccccccccccccccccccCceeEEEEEcCCCceEecchhhhhchhhhhh
Confidence 999999999864 689999999985 44 4678899853 24779999999999976 9999999999997 455
Q ss_pred hccCC-----HHHHHHHHhhhhhcccCCCCCccccccccCcccccCCchHHHHHHHHhccCCCCCChhhhccCCceeehh
Q 007298 231 SKRVN-----SAWWDAVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELETRALTEPLPTNQQAYKNHQLYVIER 305 (609)
Q Consensus 231 rkRv~-----~~Ww~~~L~~l~~~~s~~~~~~~i~~~~~~~~~~~Rd~~Ed~eL~~~~~~e~iPtsi~~fKnHP~YVLer 305 (609)
+.|+. +.||..+|+.|++. ...++|..||+||+.+.++||||+|+++|||||+|||||
T Consensus 290 r~Ri~~~~~~~~W~~~~L~~~~~~-----------------~~~~~d~~Ed~el~~~~~~e~~P~s~~~fK~HP~yvLer 352 (533)
T 2qsf_A 290 KRRITKDDFGEKWFRKVITALHHR-----------------KRTKIDDYEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQ 352 (533)
T ss_dssp GGSGGGSHHHHHHHHHHHHHHCCS-----------------CCCHHHHHHHHHHHHHHHHSCCCSSTGGGTTCSSEEEGG
T ss_pred eeeecCCcchHHHHHHHHHHHhcC-----------------CccccchhHHHHHHHHHhcCCCCccHHHHcCCcHhhhhh
Confidence 66764 78999999988742 234578899999999999999999999999999999999
Q ss_pred ccccccccCCCCCcceeecc-------eeeeecCCccccccHHHHHHhcccccCCCcccceeccCCCCCCCCCCCCCCcc
Q 007298 306 WLNKYQILYPKGPILGFCSG-------HAVYPRSCVQTLKTKERWLREALQVKANEVPVKVIKNSSKSKKGQDFEPEDYD 378 (609)
Q Consensus 306 ~Lkk~EvI~P~~~v~G~~~G-------EpVY~RsdV~~LkS~e~W~r~GR~VK~gE~PlK~vk~~~~~~k~~~~~~~~~~ 378 (609)
||++||+|||+++++|+|+| ||||+|+||++|||+++|+++||+||+||+|+|+|+.++.+.. .++
T Consensus 353 ~L~k~E~i~P~a~~~g~~~~~~k~~~~E~VY~R~~V~~l~S~e~W~~~gR~vk~ge~P~K~v~~r~~~~~----~~~--- 425 (533)
T 2qsf_A 353 DIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKRDIADLKSARQWYMNGRILKTGSRCKKVIKRTVGRPK----GEA--- 425 (533)
T ss_dssp GSCTTEEECTTCCCSEEEECCSTTCCEEEEEEGGGEEECBCHHHHHTTTEEECSSCCCSEEECC----------------
T ss_pred hhccceeeCCCCceeeEEecCcCCCcccceeehhhhheeecHHHHHHcCCccCCCCeeeeEEecccCCcc----ccc---
Confidence 99999999999999999987 9999999999999999999999999999999999987653211 111
Q ss_pred ccccccccccccccccccCCCCCC-CCCCccCCCCCceEeecCCCCCCceeeecCccHHHHHHHcCCCeeeeeeeeeecC
Q 007298 379 EVDARGNIELYGKWQLEPLRLPSA-VNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRVYSVAKRLEIDSAPAMVGFEFRN 457 (609)
Q Consensus 379 e~~~~~~~~LYg~wQTe~y~pPpv-vdG~VPkN~yGNIDlf~p~MlP~G~VHI~~~~i~kvAkkLgIDyA~AVtGFeFk~ 457 (609)
....++|||+||||+|+|||+ +||+||||+|||||||+|+|||+|||||++++++++||+||||||+|||||+|++
T Consensus 426 ---~~~~~~Ly~~~QTe~y~Pp~~~~dG~VPkN~yGNvd~~~p~m~P~G~vhi~~~~~~~~ar~L~Idya~Av~GFef~~ 502 (533)
T 2qsf_A 426 ---EEEDERLYSFEDTELYIPPLASASGEITKNTFGNIEVFAPTMIPGNCCLVENPVAIKAARFLGVEFAPAVTSFKFER 502 (533)
T ss_dssp ------CEEEBCGGGEEECCCCCCCTTCCCCCCTTSCEECSSGGGSCTTEEEEECTTHHHHHHHTTCCCEEEEEEECC--
T ss_pred ---ccccccccCHHhCccccCCCCccCCcccccCCCCEEeccCCCCCCCcEEecCccHHHHHHHhCCCeeeeeeceeeCC
Confidence 135789999999999999999 9999999999999999999999999999999999999999999999999999997
Q ss_pred C-eeeeeeceEEEccccHHHHHHHHHHHH
Q 007298 458 G-RSTPVFDGIVVCAEFKDTILEAYAEEE 485 (609)
Q Consensus 458 G-~a~PvidGIVV~~e~~~~l~~a~~e~~ 485 (609)
| +++|||+|||||+||+++|++||++.+
T Consensus 503 g~~~~Pv~~GiVV~~e~~~~l~~a~~~~~ 531 (533)
T 2qsf_A 503 GSTVKPVLSGIVVAKWLREAIETAIDGIE 531 (533)
T ss_dssp ----CEEEEEEEEETTSHHHHHHHHHTGG
T ss_pred CCcceEEeCeEEEehHHHHHHHHHHHhhh
Confidence 5 579999999999999999999997543
No 2
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=99.81 E-value=5.5e-21 Score=199.01 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=111.8
Q ss_pred hhhhhccCcHHHHHHHHHHHHhhhhhhcccCccCcccCCCCCCCCcccchhhhhcccCCCCCCCCCCccccCCCCCCCCc
Q 007298 82 SQALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPL 161 (609)
Q Consensus 82 ~~~~krkgd~~~e~q~~ma~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~~~P~ 161 (609)
.--.-|+|.-. ..|.++.|.+++++..+ |-+. + ..+|
T Consensus 175 ~ll~tr~G~C~---e~A~lF~~llRalGi~a---------------------R~V~-----------~--------~~~H 211 (335)
T 1x3z_A 175 KLLETRKGRCG---EWCNLFTLILKSFGLDV---------------------RYVW-----------N--------REDH 211 (335)
T ss_dssp HHHHHCEECHH---HHHHHHHHHHHTTTCCE---------------------EEEE-----------E--------TTTE
T ss_pred HHHHhCCcChH---HHHHHHHHHHHHCCCCe---------------------EEEe-----------c--------CCCc
Confidence 33456788766 67888999999988744 2220 0 2579
Q ss_pred eEEEEEeCCCCCCCceEEEecccccccCcchhhhhHHhcCCCceEEEEEcCCCcccchhhhHhhHHHhhhccCCHHHHHH
Q 007298 162 YWAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRIASKRVNSAWWDA 241 (609)
Q Consensus 162 fWvEVy~~~e~~~~rWI~VDPv~~~vd~p~~~Ep~~~~~~~~msYVVAfd~dGakDVTrRYa~~~~k~~rkRv~~~Ww~~ 241 (609)
+|+|||+++ .++||||||+++++|+|..||.+ |+++|+|||||+.|||+|||+||+.+ +.+++.|+++.||..
T Consensus 212 ~W~EV~~~~---~~rWv~vDp~~~~id~P~~ye~g---w~k~msYVIAFs~dgv~DVT~RY~~~-~~lrR~rv~e~wl~~ 284 (335)
T 1x3z_A 212 VWCEYFSNF---LNRWVHVDSCEQSFDQPYIYSIN---WNKKMSYCIAFGKDGVVDVSKRYILQ-NELPRDQIKEEDLKF 284 (335)
T ss_dssp EEEEEEETT---TTEEEEEETTTTEESCTHHHHTT---SCCCBCCEEEEETTEEEECHHHHCSS-SBCCCCSSCHHHHHH
T ss_pred EEEEEEECC---CCCEEEECCCCCccCCCceeecC---CCCceEEEEEEcCCCCEECHHHhCcC-CccccccCCHHHHHH
Confidence 999999975 47999999999999999999876 89999999999999999999999999 767778899999999
Q ss_pred HHhhhhhcccCCCCCccccccccCcccccCCchHHHHHHH
Q 007298 242 VLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELET 281 (609)
Q Consensus 242 ~L~~l~~~~s~~~~~~~i~~~~~~~~~~~Rd~~Ed~eL~~ 281 (609)
+|..+++...... +...+.....||..|+.||..
T Consensus 285 ~L~~l~~~~r~~~------s~~e~~~L~~Rd~~E~~EL~~ 318 (335)
T 1x3z_A 285 LCQFITKRLRYSL------NDDEIYQLACRDEQEQIELIR 318 (335)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcC------CHHHHHHHHHhHHHHHHHhhc
Confidence 9999975321111 011123456788899999873
No 3
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=99.63 E-value=3.4e-16 Score=161.35 Aligned_cols=143 Identities=21% Similarity=0.274 Sum_probs=107.8
Q ss_pred hhhhccCcHHHHHHHHHHHHhhhhhhcccCccCcccCCCCCCCCcccchhhhhcccCCCCCCCCCCccccCCCCCCCCce
Q 007298 83 QALKRKGDLEFEMQLEMALSATNVATSKSNICSDVKDLNSNSSTVLPVKRLKKIESGESSTSCLGISTAVGSRKVGAPLY 162 (609)
Q Consensus 83 ~~~krkgd~~~e~q~~ma~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~st~~~~~~~~~P~f 162 (609)
--..|+|.=. ..|..+.|.+++++-.+ |-+.. . .+|.
T Consensus 135 ~l~~r~G~C~---d~A~lf~al~Ra~GIpA---------------------R~V~G-------------y------~~Ha 171 (295)
T 2f4m_A 135 LLETRCGRCG---EWANCFTLCCRALGFEA---------------------RYVWD-------------Y------TDHV 171 (295)
T ss_dssp HHHHCEESHH---HHHHHHHHHHHHTTCCE---------------------EEEEE-------------T------TTEE
T ss_pred HHHcCCEeeH---HHHHHHHHHHHHCCCCE---------------------EEEcC-------------C------CCEE
Confidence 4456889887 77888888889888644 22100 0 6899
Q ss_pred EEEEEeCCCCCCCceEEEecccccccCcchhhhhHHhcCCCceEEEEEcCCCcccchhhhHhhHHHh--hhccCCHHHHH
Q 007298 163 WAEVYCSGENLTGKWVHVDAANAIIDGEQKVEAAAAACKTSLRYIVAFAGCGAKDVTRRYCMKWYRI--ASKRVNSAWWD 240 (609)
Q Consensus 163 WvEVy~~~e~~~~rWI~VDPv~~~vd~p~~~Ep~~~~~~~~msYVVAfd~dGakDVTrRYa~~~~k~--~rkRv~~~Ww~ 240 (609)
|+|||+++ .++||+|||+.++++.|..++.+ |.+.|+|||||+.|||+|||+||+.+|..+ ++.|+++.||.
T Consensus 172 W~Evy~~g---~~gWv~~Dpt~~~~~~p~~~e~g---wgr~lsYViAf~~D~a~DVT~RY~~~~~~~~~rR~~v~e~wl~ 245 (295)
T 2f4m_A 172 WTEVYSPS---QQRWLHCDACEDVCDKPLLYEIG---WGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLR 245 (295)
T ss_dssp EEEEEETT---TTEEEEEETTTTEESCGGGTTTT---SCCCCCCEEEECSSCEEECGGGGCSCHHHHHHHCCSSCHHHHH
T ss_pred EEEEEECC---CCeEEEEeCCcCccCCCceEeec---cCCCceEEEEECCccCccchhhcccchHHHHhhccCCCHHHHH
Confidence 99999974 36999999999999999999765 789999999999999999999999999876 45568999999
Q ss_pred HHHhhhhhcccCCCCCccccccccCcccccCCchHHHHHH
Q 007298 241 AVLAPLRELESGATGDLNVESSAKDSFVADRNSLEDMELE 280 (609)
Q Consensus 241 ~~L~~l~~~~s~~~~~~~i~~~~~~~~~~~Rd~~Ed~eL~ 280 (609)
.+|..|+....... +...+.....||..|..||.
T Consensus 246 ~~l~~l~~~~r~~~------s~~e~~~l~~Rd~~E~~el~ 279 (295)
T 2f4m_A 246 ETINGLNKQRQLSL------SESRRKELLQRIIVELVEFI 279 (295)
T ss_dssp HHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccC------CHHHHHHHHHhHHHHHHHhc
Confidence 99999975321110 01112234556677777764
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=80.84 E-value=1.5 Score=44.95 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.6
Q ss_pred CCceEEEEEeCCCCCCCceEEEecccc
Q 007298 159 APLYWAEVYCSGENLTGKWVHVDAANA 185 (609)
Q Consensus 159 ~P~fWvEVy~~~e~~~~rWI~VDPv~~ 185 (609)
..|-|+|||.+ +.|+.+||..+
T Consensus 213 ~~HAW~Evyl~-----ggWv~~DpT~~ 234 (293)
T 3isr_A 213 DFHACFEAYIG-----GNWIIFDATRL 234 (293)
T ss_dssp CEEEEEEEEET-----TEEEEECTTCC
T ss_pred CeEEEEEEEEC-----CcEEEEECCCC
Confidence 45899999985 48999999875
No 5
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=72.97 E-value=2.2 Score=28.73 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhhhhcc
Q 007298 91 LEFEMQLEMALSATNVATSK 110 (609)
Q Consensus 91 ~~~e~q~~ma~~a~~~~~~~ 110 (609)
.|.|+|||.||+-+-++++.
T Consensus 3 EeEEl~LAlAlS~sEae~~~ 22 (26)
T 2d3g_P 3 EEEELQLALALSQSEAEEKX 22 (26)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 57799999999998887765
No 6
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=46.35 E-value=6.1 Score=32.62 Aligned_cols=19 Identities=32% Similarity=0.793 Sum_probs=16.3
Q ss_pred ccceecccCCCceEEEeeC
Q 007298 591 NSVTTKRCHCGFTIQVEEL 609 (609)
Q Consensus 591 ~~~~tkrc~cg~~iqve~~ 609 (609)
....|+.|+||-.++|+++
T Consensus 17 ~~~kT~~C~CG~~~~~~k~ 35 (71)
T 1gh9_A 17 EGAKTRKCVCGRTVNVKDR 35 (71)
T ss_dssp TTCSEEEETTTEEEECCSS
T ss_pred CCCcEEECCCCCeeeeceE
Confidence 3678999999999999875
No 7
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=36.24 E-value=15 Score=31.67 Aligned_cols=25 Identities=28% Similarity=0.597 Sum_probs=21.1
Q ss_pred cccCccccccceecccCCCceEEEe
Q 007298 583 EDQSFDEENSVTTKRCHCGFTIQVE 607 (609)
Q Consensus 583 ~~~sfdee~~~~tkrc~cg~~iqve 607 (609)
||-.||+++.+++..|+||=..+|.
T Consensus 11 eDm~~de~~~~y~ypCrCGd~F~It 35 (89)
T 2jr7_A 11 EDFQYDEDSETYFYPCPCGDNFSIT 35 (89)
T ss_dssp TTSEEETTTTEEEEECTTSSEEEEE
T ss_pred HHcEEcCCCCEEEEcCCCCCEEEEC
Confidence 4688999999999999999776654
No 8
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=35.44 E-value=14 Score=31.33 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=20.4
Q ss_pred cccCccccccceecccCCCceEEEe
Q 007298 583 EDQSFDEENSVTTKRCHCGFTIQVE 607 (609)
Q Consensus 583 ~~~sfdee~~~~tkrc~cg~~iqve 607 (609)
||-.||+++.+++..|+||=..++.
T Consensus 11 eDm~~de~~~~y~ypCrCGd~F~it 35 (83)
T 1yop_A 11 EDMTFEPENQMFTYPCPCGDRFQIY 35 (83)
T ss_dssp GGSEEETTTTEEEEEETTTEEEEEE
T ss_pred HHcEEcCCCCEEEEeCCCCCeEEEC
Confidence 4588999999999999999555543
No 9
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=34.33 E-value=20 Score=30.38 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=21.4
Q ss_pred ccccCccccccceecccCCCceEEEe
Q 007298 582 IEDQSFDEENSVTTKRCHCGFTIQVE 607 (609)
Q Consensus 582 ~~~~sfdee~~~~tkrc~cg~~iqve 607 (609)
-||-.||+++.+++..|+||=..+|.
T Consensus 17 LeDm~~de~~~~y~y~CrCGd~F~it 42 (83)
T 1wge_A 17 IEDFQYDEDSETYFYPCPCGDNFAIT 42 (83)
T ss_dssp GGGSCCBTTTTEEEECCSSSSCEEEE
T ss_pred HHHceEccCCCEEEEeCCCCCEEEEC
Confidence 34688999999999999999766653
No 10
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=32.05 E-value=49 Score=21.78 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007298 499 QATSRWYQLLSSIVTRQRLNNC 520 (609)
Q Consensus 499 ~aL~~Wk~Ll~~L~Ir~RL~~~ 520 (609)
+|++.-..-++|..||+|++++
T Consensus 4 qaikylqnnikgfiirqrvnde 25 (26)
T 1m45_B 4 QAIKYLQNNIKGFIIRQRVNDE 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccceEEEeeecccC
Confidence 4556666778999999999875
No 11
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=22.79 E-value=45 Score=38.17 Aligned_cols=25 Identities=4% Similarity=-0.117 Sum_probs=19.1
Q ss_pred hccCcHHHHHHHHHHHHhhhhhhcccCc
Q 007298 86 KRKGDLEFEMQLEMALSATNVATSKSNI 113 (609)
Q Consensus 86 krkgd~~~e~q~~ma~~a~~~~~~~~~~ 113 (609)
-|.|.=+ +.|.+|.+.+|+.+--++
T Consensus 272 ~k~G~C~---dfA~~~~~llRalGIPAR 296 (687)
T 2q3z_A 272 VKYGQCW---VFAAVACTVLRCLGIPTR 296 (687)
T ss_dssp EEEECHH---HHHHHHHHHHHHHTCCEE
T ss_pred cceeehH---HHHHHHHHHHHhCCCCcE
Confidence 4568887 888888888888886554
Done!