BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007300
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/527 (67%), Positives = 413/527 (78%), Gaps = 2/527 (0%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT VV E+K
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
V D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT KIYGP TG DY+DNQ+RFSLLC
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 205 QAALEAPRILNLNSNKYFSGPY--DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 262
QAALEAPRILNLN+N YF G Y DVVFV NDWHT + YLK Y+P G+Y++AKV FC
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 263 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 322
IHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 323 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 382
P+YA+EL+SG +G ELDNI+R TGI GIVNGMDV EW+P DKYI KYDA+T ++AK
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309
Query: 383 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPM 442
L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP ++E+VQI++LGTGKK
Sbjct: 310 LNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKF 369
Query: 443 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPI 502
EK L+ +E YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL MRYGT
Sbjct: 370 EKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCA 429
Query: 503 VASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 562
ASTGGLVDTV EG TGF MG SVDC+ V+P DV V+ T++RA+ GT A EM++N
Sbjct: 430 CASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRN 489
Query: 563 GMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 609
M QDLSWKGPAK WE LL L VAGS PGI+G+EIAPLAKENVA P
Sbjct: 490 CMNQDLSWKGPAKNWENVLLGLGVAGSAPGIEGDEIAPLAKENVAAP 536
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 157/494 (31%), Positives = 238/494 (48%), Gaps = 33/494 (6%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFE 59
Query: 145 VGDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLL 203
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 60 FTDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL 114
Query: 204 CQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCI 263
+L A RI G + A+DW ++ P Y++ P+ + I
Sbjct: 115 ---SLAAARI----GAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPE-----IPSLLTI 162
Query: 264 HNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 323
HNIA+QG+F F L LPA + I+ YN ++++K G+ + + TVSP
Sbjct: 163 HNIAFQGQFGANIFSKLALPAH-AFGMEGIEYYND------VSFLKGGLQTATALSTVSP 215
Query: 324 HYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 381
YA+E+++ E G+ L+ +I R + GIVNG+D WNP TD I Y A+ + + +
Sbjct: 216 SYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN-R 273
Query: 382 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP 441
L K+A+ + D P+ I RL QKG D++A A+ + +++VLG G
Sbjct: 274 ALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVA 332
Query: 442 MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVP 501
+E L + + +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG +P
Sbjct: 333 LEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIP 392
Query: 502 IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMM 560
+VA TGGL DTV + + S + PV + + +RR + Y L +M
Sbjct: 393 VVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQ 451
Query: 561 KNGMAQDLSWKGPA 574
K GM D+SW+ A
Sbjct: 452 KLGMKSDVSWEKSA 465
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/403 (33%), Positives = 204/403 (50%), Gaps = 36/403 (8%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKG 252
Y DN LRF+LL E L+ F P DVV A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLDP-----FWRP-DVVH-AHDWHAGLAPAYLAARGRP-- 153
Query: 253 MYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGI 312
AK VF +HN+AYQG F + LP + F + + G +I+++KAG+
Sbjct: 154 ----AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGL 202
Query: 313 LESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIG 369
+D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD +
Sbjct: 203 YYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLA 262
Query: 370 VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN 429
+Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P +++
Sbjct: 263 SRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
Query: 430 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGL 489
Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPCGL
Sbjct: 322 GQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGL 381
Query: 490 IQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544
QL+ ++YGT+P+V TGGL DTV E G G D A ++ +
Sbjct: 382 TQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAI 435
Query: 545 RRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEETLLNLEV 586
RRA + +L + + MA D SW+ AK + E L++
Sbjct: 436 RRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLKL 478
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 136/402 (33%), Positives = 203/402 (50%), Gaps = 36/402 (8%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKG 252
Y DN LRF+LL E L+ F P DVV A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLDP-----FWRP-DVVH-AHDWHAGLAPAYLAARGRP-- 153
Query: 253 MYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGI 312
AK VF +HN+AYQG F + LP + F + + G +I+++KAG+
Sbjct: 154 ----AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGL 202
Query: 313 LESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIG 369
+D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD +
Sbjct: 203 YYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLA 262
Query: 370 VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN 429
+Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P +++
Sbjct: 263 SRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
Query: 430 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGL 489
Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPCGL
Sbjct: 322 GQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGL 381
Query: 490 IQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544
QL+ ++YGT+P+V TGGL DTV E G G D A ++ +
Sbjct: 382 TQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGVASGFVFEDSNAW------SLLRAI 435
Query: 545 RRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEETLLNLE 585
RRA + +L + + MA D SW+ AK + E L+
Sbjct: 436 RRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 135/403 (33%), Positives = 203/403 (50%), Gaps = 36/403 (8%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKG 252
Y DN LRF+LL E L+ F P DVV A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLDP-----FWRP-DVVH-AHDWHAGLAPAYLAARGRP-- 153
Query: 253 MYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGI 312
AK VF +HN+AYQG F + LP + F + + G +I+++KAG+
Sbjct: 154 ----AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKAGL 202
Query: 313 LESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIG 369
+D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD +
Sbjct: 203 YYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLA 262
Query: 370 VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN 429
+Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P +++
Sbjct: 263 SRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQG 321
Query: 430 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGL 489
Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRF PCGL
Sbjct: 322 GQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPCGL 381
Query: 490 IQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544
QL+ ++YGT+P+V TGGL DTV E G G D A ++ +
Sbjct: 382 TQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNA------WSLLRAI 435
Query: 545 RRALATYGTQALAEMM-KNGMAQDLSWKGPAKKWEETLLNLEV 586
RRA + +L + + MA D SW+ AK + E L++
Sbjct: 436 RRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLKL 478
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 155/493 (31%), Positives = 229/493 (46%), Gaps = 33/493 (6%)
Query: 86 NILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKV 145
N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFEF 60
Query: 146 GDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL- 114
Query: 205 QAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH 264
+L A RI G A+DW + P Y + P+ + IH
Sbjct: 115 --SLAAARI----GAGVLPGWRPDXVHAHDWQAAXTPVYXRYAETPE-----IPSLLTIH 163
Query: 265 NIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324
NIA+QG+F F L LPA + I+ YN ++++K G+ + + TVSP
Sbjct: 164 NIAFQGQFGANIFSKLALPAH-AFGXEGIEYYND------VSFLKGGLQTATALSTVSPS 216
Query: 325 YAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 382
YA+E+++ E G L+ +I R + GIVNG+D WNP TD I Y A+ + + +
Sbjct: 217 YAEEILTAE-FGXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN-RA 274
Query: 383 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPM 442
L K+A+ + D P+ I RL QKG D+ A A+ + +++VLG G +
Sbjct: 275 LNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDVAL 333
Query: 443 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPI 502
E L + + +N PL+H+ AG D I+IPSRFEPCGL QL+A+RYG +P+
Sbjct: 334 EGALLAAASRHHGRVGVAIGYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCIPV 393
Query: 503 VASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEMMK 561
VA TGGL DTV + + S + PV + + +RR + Y L + K
Sbjct: 394 VARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQXQK 452
Query: 562 NGMAQDLSWKGPA 574
G D+SW+ A
Sbjct: 453 LGXKSDVSWEKSA 465
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 117/294 (39%), Gaps = 55/294 (18%)
Query: 227 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPA 284
DVV +DWHT +K +K VF IH N + F F + GL L
Sbjct: 124 DVVHF-HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAP 175
Query: 285 QFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR 344
+ GY +D+V TVS Y D+ N
Sbjct: 176 YPDIDPEHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEG 212
Query: 345 KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404
K I + NG+D WN S + ++ K++L ++ G+ D + +
Sbjct: 213 K--ITYVFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM- 255
Query: 405 FIGRLEE-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 459
FIGR + QKG D+L AI + ++ I++G G +E LE +
Sbjct: 256 FIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVI 315
Query: 460 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 513
+ + DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 316 TEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 233 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 290
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 129 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181
Query: 291 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 350
+ GY +D+V TVS Y D+ N K I
Sbjct: 182 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 216
Query: 351 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 410
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 217 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 261
Query: 411 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 465
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 262 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 321
Query: 466 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 513
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 322 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 233 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 290
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 130 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 182
Query: 291 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 350
+ GY +D+V TVS Y D+ N K I
Sbjct: 183 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 217
Query: 351 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 410
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 218 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 262
Query: 411 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 465
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 263 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 322
Query: 466 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 513
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 323 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 370
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 353 NGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE- 411
NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 4 NGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFDRG 48
Query: 412 QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 467
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREF 108
Query: 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 513
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 109 VRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 154
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE----NVQIIVLGTGKKP 441
E + E+G+P+ + V+ F+GRL+ KG +L A+ N+++I+ G P
Sbjct: 211 ERSRRELGIPL--HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGP 268
Query: 442 ---------------MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEP 486
+EK++ L+ P + V + AD + +PS E
Sbjct: 269 NATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYR-----------AADIVAVPSFNES 317
Query: 487 CGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFS 526
GL+ + A GT I A GGL V EG TG + S
Sbjct: 318 FGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS 357
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 49/198 (24%)
Query: 348 IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIG 407
I + G DV+ ++P D+ E + E+G+P+ + V+ F+G
Sbjct: 210 ISVVSPGADVELYSPGNDR-----------------ATERSRRELGIPL--HTKVVAFVG 250
Query: 408 RLEEQKGSDILAAAIPHFIKE----NVQIIVLGTGKKP---------------MEKQLEQ 448
RL+ KG +L A+ N+++I+ G P +EK++
Sbjct: 251 RLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRF 310
Query: 449 LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 508
L+ P + V + AD + +PS E GL+ + A GT I A GG
Sbjct: 311 LDPRPPSELVAVYR-----------AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGG 359
Query: 509 LVDTVEEGFTGFQMGSFS 526
L V EG TG + S
Sbjct: 360 LPIAVAEGETGLLVDGHS 377
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 373 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 430
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 431 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR------- 483
Q++++G+G+ E L +L + + + + +A AD +P+R
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 484 FEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVD 528
E G++ L A G VP++A T GG +TV TG + VD
Sbjct: 289 VEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPA-TGLVVEGSDVD 332
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 373 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 430
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 431 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR------- 483
Q++++G+G+ E L +L + + + + +A AD +P+R
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 484 FEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVD 528
E G++ L A G VP++A T GG +TV TG + VD
Sbjct: 289 VEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPA-TGLVVEGSDVD 332
>pdb|2F2L|X Chain X, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 402 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPEKAR 458
++G GR+ E +G D + A + + ++ I +GT +KP E+QLE ++L E R
Sbjct: 69 LVGGDGRVYEGRGWDYVGAHTKGYNRGSIGISFIGTFTTRKPNERQLEACQLLLQEGVR 127
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 471 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE 530
++A +D +L+ S E GL+ L AM G I GG+ + ++ G TG+ CE
Sbjct: 301 LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL-------CE 353
Query: 531 AVDPVDVA 538
D VA
Sbjct: 354 VGDTTGVA 361
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 471 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE 530
++A +D +L+ S E GL+ L AM G I GG+ + ++ G TG+ CE
Sbjct: 281 LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL-------CE 333
Query: 531 AVDPVDVA 538
D VA
Sbjct: 334 VGDTTGVA 341
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
pdb|1OKB|B Chain B, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
Length = 223
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 293 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE--LDNIIR 344
IDG+ P G W K G+L + VLTV H A S +D+G E D +I+
Sbjct: 100 IDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKDRGWETFTDAVIK 150
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSV 527
A++ G+ F L S +EP GL + AM G +V GG + ++ G G
Sbjct: 353 AYLASKGSVFALT-SFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGV------- 404
Query: 528 DCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEETL 581
VDP D ++ + +A + T A E K + + +W+ A+ + E +
Sbjct: 405 ---LVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETARGYLEVI 456
>pdb|3SDY|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
Length = 216
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 473 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 511
+G DF L SR EP + +YGT P G V+
Sbjct: 69 SGTDFTLTISRLEPADFAVYYCQQYGTSPRTFGQGAKVE 107
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 366
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
Length = 229
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 366
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1LQG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQJ|A Chain A, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|B Chain B, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|C Chain C, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|D Chain D, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQM|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|C Chain C, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|E Chain E, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|G Chain G, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 229
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 366
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
Length = 228
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 366
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 366
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 228
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 366
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna
Glycosylase And A C-Terminal Fragement Of The
Single-Stranded Dna-Binding Protein
Length = 237
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 366
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
Length = 229
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 279 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 333
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 383
DK + L N R+ G+ ++ G Q+ + DK ++ D PL
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDKQ---RHHVLKAPDPSPL 191
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 293 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 338
I+G+ P G W K G+L + VLTV H A S +++G E
Sbjct: 100 IEGFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKERGWE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,789,240
Number of Sequences: 62578
Number of extensions: 751896
Number of successful extensions: 1590
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1541
Number of HSP's gapped (non-prelim): 32
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)