Query 007300
Match_columns 609
No_of_seqs 289 out of 2973
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 21:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02939 transferase, transfer 100.0 3.5E-68 7.5E-73 593.1 47.7 468 82-588 479-971 (977)
2 PRK14099 glycogen synthase; Pr 100.0 6.4E-67 1.4E-71 571.1 46.1 467 82-587 1-482 (485)
3 PRK14098 glycogen synthase; Pr 100.0 2E-66 4.3E-71 567.8 46.9 467 85-586 6-488 (489)
4 TIGR02095 glgA glycogen/starch 100.0 1.1E-62 2.4E-67 540.3 46.6 459 85-584 1-473 (473)
5 PLN02316 synthase/transferase 100.0 3.5E-62 7.5E-67 555.0 47.9 435 77-585 580-1035(1036)
6 PRK00654 glgA glycogen synthas 100.0 8.5E-62 1.8E-66 531.5 47.0 453 85-586 1-465 (466)
7 cd03791 GT1_Glycogen_synthase_ 100.0 1.1E-58 2.4E-63 509.7 45.8 462 86-582 1-475 (476)
8 COG0297 GlgA Glycogen synthase 100.0 1.2E-58 2.6E-63 493.8 41.1 465 85-588 1-482 (487)
9 TIGR02094 more_P_ylases alpha- 100.0 6.2E-40 1.3E-44 361.9 38.2 474 87-582 1-599 (601)
10 PRK10307 putative glycosyl tra 100.0 2.6E-39 5.6E-44 349.3 38.7 396 85-587 1-411 (412)
11 TIGR02468 sucrsPsyn_pln sucros 100.0 2E-39 4.4E-44 368.2 38.7 446 82-587 167-674 (1050)
12 TIGR03449 mycothiol_MshA UDP-N 100.0 4.1E-39 8.8E-44 346.9 36.0 386 87-586 1-404 (405)
13 cd03796 GT1_PIG-A_like This fa 100.0 8.7E-39 1.9E-43 343.6 36.6 364 86-587 1-371 (398)
14 TIGR02472 sucr_P_syn_N sucrose 100.0 1.3E-38 2.8E-43 346.2 37.1 390 99-582 24-439 (439)
15 TIGR02149 glgA_Coryne glycogen 100.0 2E-38 4.4E-43 339.0 37.4 373 85-585 1-388 (388)
16 PLN02871 UDP-sulfoquinovose:DA 100.0 3.1E-38 6.7E-43 345.9 37.3 375 82-587 56-438 (465)
17 TIGR02470 sucr_synth sucrose s 100.0 9.2E-38 2E-42 348.7 38.4 428 84-581 255-745 (784)
18 PRK15484 lipopolysaccharide 1, 100.0 3.8E-37 8.3E-42 328.5 36.3 365 85-585 3-379 (380)
19 cd04962 GT1_like_5 This family 100.0 2.1E-36 4.5E-41 321.0 37.5 365 85-584 1-371 (371)
20 PLN00142 sucrose synthase 100.0 1.7E-36 3.6E-41 338.5 35.1 322 225-581 408-768 (815)
21 PRK15427 colanic acid biosynth 100.0 3.2E-36 6.9E-41 323.7 35.4 275 225-584 118-406 (406)
22 TIGR03088 stp2 sugar transfera 100.0 4.7E-35 1E-39 311.8 33.6 358 85-584 2-373 (374)
23 cd03818 GT1_ExpC_like This fam 100.0 8.7E-35 1.9E-39 312.4 35.9 378 86-579 1-396 (396)
24 cd03800 GT1_Sucrose_synthase T 100.0 8.6E-35 1.9E-39 311.2 34.0 380 85-578 7-397 (398)
25 cd03802 GT1_AviGT4_like This f 100.0 2E-34 4.4E-39 301.1 35.0 329 85-582 1-335 (335)
26 cd04299 GT1_Glycogen_Phosphory 100.0 2.2E-34 4.9E-39 322.5 37.0 471 86-582 87-688 (778)
27 PLN02846 digalactosyldiacylgly 100.0 5.5E-35 1.2E-39 312.4 28.8 381 83-584 3-392 (462)
28 cd03805 GT1_ALG2_like This fam 100.0 1E-34 2.2E-39 310.9 31.0 371 85-577 1-392 (392)
29 PRK10125 putative glycosyl tra 100.0 3.1E-34 6.7E-39 307.5 32.4 380 85-584 1-405 (405)
30 cd03792 GT1_Trehalose_phosphor 100.0 9.9E-34 2.1E-38 301.7 35.0 359 86-584 1-372 (372)
31 cd04955 GT1_like_6 This family 100.0 4.3E-33 9.3E-38 294.2 36.7 357 86-582 1-363 (363)
32 PRK09922 UDP-D-galactose:(gluc 100.0 6.8E-34 1.5E-38 301.5 30.0 219 312-585 131-357 (359)
33 KOG1111 N-acetylglucosaminyltr 100.0 1.4E-34 3.1E-39 285.7 22.6 368 85-589 1-372 (426)
34 cd03825 GT1_wcfI_like This fam 100.0 6.9E-33 1.5E-37 292.5 34.6 351 85-584 1-365 (365)
35 cd04951 GT1_WbdM_like This fam 100.0 8.3E-33 1.8E-37 291.4 34.3 353 86-582 1-359 (360)
36 cd03814 GT1_like_2 This family 100.0 1.4E-32 3.1E-37 288.7 35.1 360 86-582 1-364 (364)
37 cd05844 GT1_like_7 Glycosyltra 100.0 9.7E-33 2.1E-37 292.4 34.0 272 225-579 82-366 (367)
38 cd03807 GT1_WbnK_like This fam 100.0 1E-32 2.3E-37 288.6 33.8 357 86-582 1-365 (365)
39 cd03819 GT1_WavL_like This fam 100.0 8.2E-33 1.8E-37 291.3 32.7 338 99-573 8-355 (355)
40 cd03795 GT1_like_4 This family 100.0 1.6E-32 3.4E-37 289.0 33.2 349 86-574 1-357 (357)
41 cd03823 GT1_ExpE7_like This fa 100.0 3.1E-32 6.7E-37 285.4 34.3 357 86-582 1-358 (359)
42 cd03794 GT1_wbuB_like This fam 100.0 5.1E-32 1.1E-36 285.8 35.3 383 86-578 1-394 (394)
43 PRK15179 Vi polysaccharide bio 100.0 2.8E-32 6.1E-37 305.3 33.4 283 225-582 400-692 (694)
44 cd03799 GT1_amsK_like This is 100.0 1.4E-31 3.1E-36 281.4 35.0 341 86-576 1-354 (355)
45 cd03821 GT1_Bme6_like This fam 100.0 5.1E-32 1.1E-36 284.5 31.3 366 86-579 1-375 (375)
46 cd03817 GT1_UGDG_like This fam 100.0 1.4E-31 3E-36 281.4 34.3 365 86-583 1-373 (374)
47 cd03812 GT1_CapH_like This fam 100.0 6.9E-32 1.5E-36 284.6 31.7 347 86-572 1-351 (358)
48 cd03801 GT1_YqgM_like This fam 100.0 3E-31 6.4E-36 276.8 36.0 367 86-582 1-374 (374)
49 PRK15490 Vi polysaccharide bio 100.0 7E-32 1.5E-36 289.2 31.3 227 314-583 339-575 (578)
50 cd03822 GT1_ecORF704_like This 100.0 3.4E-31 7.3E-36 278.8 35.5 349 86-582 1-366 (366)
51 cd03809 GT1_mtfB_like This fam 100.0 1E-31 2.3E-36 282.6 28.2 360 86-579 1-365 (365)
52 cd03816 GT1_ALG1_like This fam 100.0 6.5E-31 1.4E-35 283.8 34.4 372 84-575 3-408 (415)
53 PLN02949 transferase, transfer 100.0 6.5E-31 1.4E-35 285.0 34.3 230 308-588 214-461 (463)
54 cd03798 GT1_wlbH_like This fam 100.0 1.4E-30 3E-35 272.8 35.1 372 87-584 1-377 (377)
55 cd03806 GT1_ALG11_like This fa 100.0 1E-30 2.3E-35 282.1 32.5 218 307-575 182-418 (419)
56 cd03813 GT1_like_3 This family 100.0 1.7E-31 3.7E-36 293.1 26.1 287 225-582 173-475 (475)
57 cd03820 GT1_amsD_like This fam 100.0 1.4E-30 3.1E-35 270.3 31.6 340 86-579 1-348 (348)
58 cd03808 GT1_cap1E_like This fa 100.0 3.5E-30 7.5E-35 268.6 33.6 352 86-578 1-358 (359)
59 PF08323 Glyco_transf_5: Starc 100.0 4.5E-32 9.8E-37 270.7 17.4 235 86-344 1-244 (245)
60 TIGR03087 stp1 sugar transfera 100.0 1.9E-30 4.1E-35 278.9 23.9 222 306-582 164-395 (397)
61 cd03793 GT1_Glycogen_synthase_ 100.0 3.4E-29 7.3E-34 268.7 32.2 447 90-586 7-589 (590)
62 PLN02501 digalactosyldiacylgly 100.0 6.6E-29 1.4E-33 268.5 26.7 208 315-582 499-708 (794)
63 cd03811 GT1_WabH_like This fam 100.0 4.4E-28 9.6E-33 251.8 31.7 341 86-569 1-352 (353)
64 cd03804 GT1_wbaZ_like This fam 100.0 9.9E-29 2.2E-33 260.8 27.1 206 306-577 145-350 (351)
65 TIGR02918 accessory Sec system 100.0 4.6E-28 1E-32 265.1 28.3 224 311-584 267-500 (500)
66 PHA01630 putative group 1 glyc 100.0 3.5E-28 7.6E-33 253.3 24.5 231 306-583 85-330 (331)
67 PHA01633 putative glycosyl tra 100.0 4.3E-27 9.2E-32 242.7 31.8 225 306-579 84-335 (335)
68 PLN02275 transferase, transfer 100.0 4.3E-27 9.4E-32 250.4 28.8 245 225-548 100-371 (371)
69 cd04946 GT1_AmsK_like This fam 100.0 6.6E-27 1.4E-31 251.9 29.5 220 306-578 175-406 (407)
70 cd04949 GT1_gtfA_like This fam 99.9 6.4E-26 1.4E-30 241.2 24.5 214 309-577 152-372 (372)
71 PRK00726 murG undecaprenyldiph 99.9 1.6E-24 3.4E-29 229.6 30.5 342 85-582 2-356 (357)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.9 2E-25 4.3E-30 243.2 23.8 292 226-581 132-459 (460)
73 TIGR02400 trehalose_OtsA alpha 99.9 1.1E-24 2.4E-29 235.7 27.4 292 226-581 128-454 (456)
74 cd03785 GT1_MurG MurG is an N- 99.9 5.1E-23 1.1E-27 217.1 30.9 324 86-564 1-336 (350)
75 TIGR01133 murG undecaprenyldip 99.9 6E-23 1.3E-27 216.4 30.4 321 85-563 1-332 (348)
76 PRK13609 diacylglycerol glucos 99.9 1.5E-21 3.3E-26 208.6 31.6 220 312-583 145-371 (380)
77 PLN03063 alpha,alpha-trehalose 99.9 2.6E-22 5.6E-27 230.1 25.9 299 226-586 148-480 (797)
78 cd04950 GT1_like_1 Glycosyltra 99.9 6.6E-21 1.4E-25 203.1 31.1 222 306-583 145-371 (373)
79 PRK14501 putative bifunctional 99.9 7.9E-22 1.7E-26 226.4 22.0 297 226-587 134-466 (726)
80 PRK05749 3-deoxy-D-manno-octul 99.9 9.8E-21 2.1E-25 205.4 26.9 234 306-586 170-422 (425)
81 PF00534 Glycos_transf_1: Glyc 99.9 6.5E-21 1.4E-25 180.0 19.6 164 385-564 2-170 (172)
82 KOG0853 Glycosyltransferase [C 99.9 2.9E-20 6.3E-25 196.3 24.5 240 311-585 206-469 (495)
83 PRK13608 diacylglycerol glucos 99.9 2.7E-19 5.8E-24 191.8 31.0 223 312-586 145-374 (391)
84 PLN02605 monogalactosyldiacylg 99.9 1.2E-19 2.6E-24 194.0 28.3 216 312-580 148-378 (382)
85 TIGR02398 gluc_glyc_Psyn gluco 99.8 3E-19 6.4E-24 192.5 26.4 293 226-581 133-480 (487)
86 cd01635 Glycosyltransferase_GT 99.8 2E-19 4.4E-24 175.9 22.9 118 405-522 109-229 (229)
87 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 3.2E-17 6.8E-22 173.9 27.4 216 311-580 138-361 (363)
88 PRK00025 lpxB lipid-A-disaccha 99.8 5.1E-17 1.1E-21 173.6 27.3 219 311-586 131-376 (380)
89 PRK09814 beta-1,6-galactofuran 99.8 1.4E-16 3.1E-21 167.0 30.0 185 305-563 114-309 (333)
90 PLN03064 alpha,alpha-trehalose 99.8 5.1E-17 1.1E-21 185.6 25.1 297 227-586 233-564 (934)
91 TIGR00236 wecB UDP-N-acetylglu 99.8 1E-16 2.2E-21 170.4 24.8 216 313-581 140-361 (365)
92 KOG1387 Glycosyltransferase [C 99.7 4E-16 8.6E-21 154.2 23.7 224 312-587 220-462 (465)
93 COG0438 RfaG Glycosyltransfera 99.7 1.3E-15 2.8E-20 157.0 26.7 223 314-586 150-379 (381)
94 PF05693 Glycogen_syn: Glycoge 99.7 2.1E-15 4.5E-20 161.7 23.2 344 196-587 120-585 (633)
95 KOG2941 Beta-1,4-mannosyltrans 99.7 2.4E-14 5.2E-19 141.9 28.7 301 225-577 103-435 (444)
96 PF13692 Glyco_trans_1_4: Glyc 99.6 6.1E-15 1.3E-19 133.4 9.5 130 400-550 2-135 (135)
97 TIGR00215 lpxB lipid-A-disacch 99.6 1.2E-12 2.6E-17 139.9 28.5 191 309-550 133-347 (385)
98 PF00982 Glyco_transf_20: Glyc 99.5 4.2E-12 9.1E-17 137.6 24.9 295 226-581 142-472 (474)
99 TIGR03713 acc_sec_asp1 accesso 99.5 1.2E-12 2.7E-17 143.8 20.1 212 311-581 269-519 (519)
100 PRK10117 trehalose-6-phosphate 99.5 2.8E-12 6.1E-17 137.3 22.2 296 226-585 124-455 (474)
101 PF13439 Glyco_transf_4: Glyco 99.4 9.4E-13 2E-17 123.6 11.3 176 87-360 1-176 (177)
102 COG0058 GlgP Glucan phosphoryl 99.4 5.9E-12 1.3E-16 139.2 17.2 435 96-550 111-662 (750)
103 PLN02205 alpha,alpha-trehalose 99.4 8.1E-11 1.8E-15 135.8 25.0 299 227-586 203-554 (854)
104 PF13579 Glyco_trans_4_4: Glyc 99.4 2.3E-12 5.1E-17 118.8 9.1 160 101-354 1-160 (160)
105 COG0380 OtsA Trehalose-6-phosp 99.3 4E-10 8.7E-15 120.3 24.7 295 227-583 149-479 (486)
106 PRK12446 undecaprenyldiphospho 99.2 1.3E-08 2.9E-13 107.4 31.0 167 386-582 173-350 (352)
107 PRK14986 glycogen phosphorylas 99.2 2E-09 4.4E-14 120.8 24.3 288 229-523 316-694 (815)
108 cd04300 GT1_Glycogen_Phosphory 99.2 7.5E-09 1.6E-13 116.5 25.5 294 225-523 300-681 (797)
109 COG0707 MurG UDP-N-acetylgluco 99.1 1.2E-07 2.5E-12 99.6 31.9 342 85-584 1-354 (357)
110 PRK14985 maltodextrin phosphor 99.1 2.2E-09 4.7E-14 120.1 19.1 291 225-523 302-680 (798)
111 PF13524 Glyco_trans_1_2: Glyc 99.1 3.1E-10 6.7E-15 95.5 8.9 89 477-579 1-92 (92)
112 TIGR02093 P_ylase glycogen/sta 99.1 1.9E-09 4.2E-14 120.6 17.1 292 225-523 297-678 (794)
113 TIGR02919 accessory Sec system 99.1 3.5E-09 7.6E-14 114.0 18.1 171 313-550 238-411 (438)
114 PF09314 DUF1972: Domain of un 98.9 4.2E-08 9.1E-13 92.5 13.6 182 86-356 3-185 (185)
115 PF00343 Phosphorylase: Carboh 98.9 1.8E-07 3.9E-12 104.0 20.5 289 228-523 216-595 (713)
116 TIGR03568 NeuC_NnaA UDP-N-acet 98.7 5E-06 1.1E-10 88.3 23.7 214 313-580 143-364 (365)
117 PF04007 DUF354: Protein of un 98.6 5E-06 1.1E-10 86.4 20.1 295 85-549 1-309 (335)
118 KOG3742 Glycogen synthase [Car 98.6 2.6E-07 5.7E-12 94.9 10.1 109 470-585 496-614 (692)
119 TIGR03492 conserved hypothetic 98.6 3.1E-05 6.8E-10 83.1 26.6 210 311-582 157-393 (396)
120 PF13528 Glyco_trans_1_3: Glyc 98.5 1E-05 2.2E-10 84.1 21.6 119 399-547 192-317 (318)
121 cd03784 GT1_Gtf_like This fami 98.5 2.5E-05 5.3E-10 84.1 24.6 123 400-550 240-372 (401)
122 COG0763 LpxB Lipid A disacchar 98.5 1.3E-05 2.9E-10 82.7 20.8 194 308-551 130-345 (381)
123 PF02350 Epimerase_2: UDP-N-ac 98.4 1.7E-05 3.6E-10 83.6 19.9 272 225-582 67-346 (346)
124 TIGR03590 PseG pseudaminic aci 98.3 5.2E-05 1.1E-09 77.5 20.0 96 401-506 172-268 (279)
125 PF13477 Glyco_trans_4_2: Glyc 98.3 9.7E-06 2.1E-10 73.3 12.5 34 86-128 1-34 (139)
126 COG0381 WecB UDP-N-acetylgluco 98.3 0.0018 3.8E-08 67.5 29.4 224 313-586 144-373 (383)
127 PF02684 LpxB: Lipid-A-disacch 98.1 0.00098 2.1E-08 70.4 24.2 192 308-550 127-340 (373)
128 COG1519 KdtA 3-deoxy-D-manno-o 98.1 0.0015 3.2E-08 68.6 25.0 211 305-564 168-398 (419)
129 PRK01021 lpxB lipid-A-disaccha 98.1 0.00096 2.1E-08 73.7 24.7 154 308-505 355-514 (608)
130 PHA03392 egt ecdysteroid UDP-g 98.1 0.0029 6.4E-08 70.1 28.2 153 401-581 298-464 (507)
131 PF13844 Glyco_transf_41: Glyc 97.9 0.00052 1.1E-08 73.9 18.7 184 388-585 275-468 (468)
132 TIGR00661 MJ1255 conserved hyp 97.9 0.0015 3.3E-08 68.1 21.0 118 401-549 190-313 (321)
133 COG1817 Uncharacterized protei 97.8 0.0024 5.2E-08 64.1 19.6 186 309-550 121-314 (346)
134 COG1819 Glycosyl transferases, 97.8 0.002 4.3E-08 69.4 20.1 126 401-550 239-368 (406)
135 PRK02797 4-alpha-L-fucosyltran 97.8 0.0093 2E-07 60.4 22.6 164 401-585 146-318 (322)
136 COG3914 Spy Predicted O-linked 97.7 0.0047 1E-07 66.8 21.1 183 389-588 421-618 (620)
137 PF00862 Sucrose_synth: Sucros 97.4 0.00032 7E-09 74.7 6.6 185 85-327 273-481 (550)
138 COG4641 Uncharacterized protei 97.2 0.036 7.9E-07 57.4 19.6 187 347-585 162-363 (373)
139 COG3660 Predicted nucleoside-d 97.2 0.069 1.5E-06 52.5 19.7 114 385-506 150-273 (329)
140 TIGR01426 MGT glycosyltransfer 97.2 0.008 1.7E-07 64.5 15.2 157 401-580 227-389 (392)
141 PF07429 Glyco_transf_56: 4-al 97.1 0.17 3.6E-06 52.2 22.4 164 401-584 185-356 (360)
142 PRK14089 ipid-A-disaccharide s 97.1 0.15 3.3E-06 53.6 22.7 90 402-505 170-261 (347)
143 PF12000 Glyco_trans_4_3: Gkyc 97.0 0.0022 4.8E-08 59.9 7.6 40 310-360 131-170 (171)
144 PRK10017 colanic acid biosynth 97.0 0.8 1.7E-05 49.6 32.1 215 306-564 168-404 (426)
145 PF04464 Glyphos_transf: CDP-G 96.9 0.04 8.7E-07 58.6 16.8 193 307-550 127-336 (369)
146 KOG1050 Trehalose-6-phosphate 96.6 0.19 4.1E-06 57.6 20.7 264 226-551 141-441 (732)
147 PF06258 Mito_fiss_Elm1: Mitoc 95.8 0.44 9.5E-06 49.4 16.6 104 401-508 148-259 (311)
148 COG4671 Predicted glycosyl tra 95.4 4.1 8.8E-05 42.3 23.0 136 400-550 220-365 (400)
149 COG3980 spsG Spore coat polysa 95.3 1.4 3.1E-05 44.2 17.2 88 402-501 161-249 (318)
150 PLN02562 UDP-glycosyltransfera 94.2 0.93 2E-05 49.6 14.5 128 401-550 275-413 (448)
151 PLN02448 UDP-glycosyltransfera 94.0 1.1 2.5E-05 49.1 14.6 132 401-550 276-415 (459)
152 PF11440 AGT: DNA alpha-glucos 93.8 7.1 0.00015 39.1 17.9 154 386-550 168-353 (355)
153 PF11997 DUF3492: Domain of un 93.4 0.12 2.6E-06 52.3 5.3 44 85-129 1-44 (268)
154 PLN02670 transferase, transfer 93.2 2.1 4.5E-05 47.1 14.9 107 471-584 352-466 (472)
155 PF10087 DUF2325: Uncharacteri 93.1 0.24 5.2E-06 41.8 5.9 80 432-512 2-89 (97)
156 PF12038 DUF3524: Domain of un 92.1 0.58 1.3E-05 43.2 7.3 21 311-331 116-136 (168)
157 TIGR02195 heptsyl_trn_II lipop 91.7 2 4.2E-05 44.9 12.0 113 385-505 161-277 (334)
158 PLN02210 UDP-glucosyl transfer 91.3 4 8.6E-05 44.8 14.2 137 401-550 271-415 (456)
159 PF06925 MGDG_synth: Monogalac 91.2 1.1 2.3E-05 42.0 8.5 26 312-340 135-160 (169)
160 PF00201 UDPGT: UDP-glucoronos 91.2 0.84 1.8E-05 50.6 9.0 154 400-582 277-442 (500)
161 PLN02167 UDP-glycosyltransfera 90.9 3.9 8.5E-05 45.1 13.7 139 401-550 282-434 (475)
162 PLN02410 UDP-glucoronosyl/UDP- 90.7 4 8.7E-05 44.7 13.5 69 471-551 337-411 (451)
163 PLN03007 UDP-glucosyltransfera 90.3 3.8 8.2E-05 45.4 13.1 138 400-551 286-441 (482)
164 PLN03004 UDP-glycosyltransfera 89.4 5.6 0.00012 43.5 13.2 136 401-550 272-424 (451)
165 PLN00164 glucosyltransferase; 89.1 12 0.00025 41.4 15.7 74 471-550 352-431 (480)
166 PLN02173 UDP-glucosyl transfer 89.0 7 0.00015 42.7 13.6 137 401-550 266-408 (449)
167 PF01075 Glyco_transf_9: Glyco 89.0 2.8 6E-05 41.6 9.9 102 399-505 105-209 (247)
168 PLN02208 glycosyltransferase f 88.8 13 0.00028 40.6 15.6 73 471-551 324-402 (442)
169 PRK10422 lipopolysaccharide co 88.6 4.6 0.0001 42.6 11.7 102 400-506 184-289 (352)
170 PF04101 Glyco_tran_28_C: Glyc 88.5 0.11 2.3E-06 48.5 -0.7 89 456-560 56-152 (167)
171 PLN02152 indole-3-acetate beta 88.5 7.7 0.00017 42.5 13.6 136 401-550 263-417 (455)
172 PLN02207 UDP-glycosyltransfera 88.0 12 0.00026 41.2 14.6 138 401-549 277-425 (468)
173 TIGR02201 heptsyl_trn_III lipo 87.4 7.4 0.00016 40.8 12.4 100 401-505 183-286 (344)
174 cd03789 GT1_LPS_heptosyltransf 87.4 3.7 8E-05 41.6 9.8 102 402-510 124-229 (279)
175 PLN02863 UDP-glucoronosyl/UDP- 87.3 8.6 0.00019 42.5 13.1 135 401-549 285-432 (477)
176 PLN02554 UDP-glycosyltransfera 86.8 11 0.00024 41.6 13.7 140 401-549 276-439 (481)
177 PLN02764 glycosyltransferase f 86.2 19 0.00042 39.3 14.9 72 471-550 330-407 (453)
178 PLN02555 limonoid glucosyltran 86.0 18 0.0004 39.9 14.8 140 401-550 279-429 (480)
179 TIGR02193 heptsyl_trn_I lipopo 85.7 15 0.00034 37.8 13.6 98 401-505 181-280 (319)
180 PLN02992 coniferyl-alcohol glu 85.2 20 0.00043 39.6 14.6 71 471-550 351-427 (481)
181 TIGR03609 S_layer_CsaB polysac 84.6 50 0.0011 33.7 19.6 100 401-505 173-276 (298)
182 COG0859 RfaF ADP-heptose:LPS h 84.4 6.3 0.00014 41.3 10.0 99 401-506 177-278 (334)
183 PF01975 SurE: Survival protei 84.2 1.1 2.5E-05 43.0 3.8 40 85-131 1-40 (196)
184 PF05159 Capsule_synth: Capsul 84.0 5.5 0.00012 40.3 9.0 100 398-506 115-226 (269)
185 PF02951 GSH-S_N: Prokaryotic 82.9 5 0.00011 35.2 7.0 41 85-128 1-41 (119)
186 PRK10916 ADP-heptose:LPS hepto 82.4 15 0.00032 38.6 11.9 111 387-505 169-287 (348)
187 PF08288 PIGA: PIGA (GPI ancho 82.0 5.8 0.00012 32.6 6.4 36 225-266 50-85 (90)
188 PF01113 DapB_N: Dihydrodipico 80.6 2.7 5.9E-05 37.1 4.6 80 430-511 1-104 (124)
189 PLN00414 glycosyltransferase f 79.0 56 0.0012 35.8 15.1 72 471-550 325-402 (446)
190 PRK10964 ADP-heptose:LPS hepto 77.5 17 0.00037 37.6 10.3 98 402-506 181-280 (322)
191 KOG0780 Signal recognition par 75.7 59 0.0013 34.5 13.0 164 403-582 157-341 (483)
192 PRK00207 sulfur transfer compl 75.4 4.5 9.8E-05 36.0 4.5 40 85-127 1-41 (128)
193 PF03016 Exostosin: Exostosin 72.7 12 0.00026 38.2 7.6 68 468-545 230-300 (302)
194 PLN02534 UDP-glycosyltransfera 71.0 95 0.0021 34.4 14.4 78 470-549 356-443 (491)
195 PF04413 Glycos_transf_N: 3-De 69.5 34 0.00074 32.5 9.3 85 225-353 95-179 (186)
196 PF08660 Alg14: Oligosaccharid 68.9 52 0.0011 30.8 10.2 72 225-331 92-163 (170)
197 PLN00016 RNA-binding protein; 68.2 6.3 0.00014 42.0 4.4 38 84-127 52-89 (378)
198 PF15024 Glyco_transf_18: Glyc 67.9 36 0.00079 37.8 10.1 160 401-583 278-455 (559)
199 PF03033 Glyco_transf_28: Glyc 67.3 7.5 0.00016 34.5 4.1 27 101-127 9-35 (139)
200 KOG1192 UDP-glucuronosyl and U 67.3 83 0.0018 34.6 13.3 158 401-580 279-452 (496)
201 KOG2884 26S proteasome regulat 66.2 73 0.0016 30.8 10.3 119 400-550 108-229 (259)
202 cd03146 GAT1_Peptidase_E Type 64.1 72 0.0016 30.9 10.6 107 402-508 2-124 (212)
203 COG2910 Putative NADH-flavin r 61.6 10 0.00022 35.8 3.8 34 85-128 1-34 (211)
204 PF02826 2-Hacid_dh_C: D-isome 61.4 29 0.00062 32.6 7.1 81 429-511 36-133 (178)
205 COG0111 SerA Phosphoglycerate 61.4 25 0.00055 36.6 7.2 81 429-511 142-239 (324)
206 PF12996 DUF3880: DUF based on 60.8 22 0.00048 28.5 5.3 44 310-364 14-57 (79)
207 PRK06249 2-dehydropantoate 2-r 59.7 13 0.00028 38.5 4.7 35 82-127 3-37 (313)
208 PRK10037 cell division protein 58.7 9.6 0.00021 38.0 3.5 37 85-127 1-39 (250)
209 PLN03015 UDP-glucosyl transfer 58.4 1.9E+02 0.0042 31.9 13.6 72 471-549 348-425 (470)
210 PRK08410 2-hydroxyacid dehydro 57.6 28 0.00062 36.0 6.8 81 429-511 145-238 (311)
211 PRK08305 spoVFB dipicolinate s 57.3 18 0.00038 34.8 4.8 37 83-127 4-42 (196)
212 PF03358 FMN_red: NADPH-depend 56.9 17 0.00036 32.9 4.5 40 85-127 1-40 (152)
213 PRK13234 nifH nitrogenase redu 56.8 13 0.00028 38.3 4.1 39 82-127 1-41 (295)
214 KOG2099 Glycogen phosphorylase 56.5 6.4 0.00014 43.1 1.8 138 388-525 551-716 (843)
215 CHL00072 chlL photochlorophyll 56.5 10 0.00023 38.8 3.4 35 85-127 1-37 (290)
216 PF03808 Glyco_tran_WecB: Glyc 56.3 82 0.0018 29.4 9.1 102 410-515 29-142 (172)
217 cd03129 GAT1_Peptidase_E_like 54.8 1.2E+02 0.0026 29.2 10.4 99 411-509 11-125 (210)
218 cd06533 Glyco_transf_WecG_TagA 53.9 86 0.0019 29.3 8.8 102 410-514 27-139 (171)
219 KOG4626 O-linked N-acetylgluco 53.3 1.3E+02 0.0027 34.1 10.8 182 388-588 749-945 (966)
220 COG0003 ArsA Predicted ATPase 53.2 12 0.00025 39.0 3.1 75 85-178 2-79 (322)
221 PRK10360 DNA-binding transcrip 52.6 1.9E+02 0.0041 26.6 12.0 108 431-550 3-118 (196)
222 PRK06932 glycerate dehydrogena 52.6 35 0.00077 35.4 6.6 81 429-511 147-239 (314)
223 TIGR00696 wecB_tagA_cpsF bacte 52.4 66 0.0014 30.3 7.8 99 413-514 32-140 (177)
224 KOG1021 Acetylglucosaminyltran 52.0 1.1E+02 0.0024 33.7 10.6 84 467-563 336-422 (464)
225 CHL00175 minD septum-site dete 51.3 18 0.00039 36.6 4.2 45 77-127 7-53 (281)
226 PLN02927 antheraxanthin epoxid 50.8 25 0.00054 40.4 5.5 34 82-126 79-112 (668)
227 PF02374 ArsA_ATPase: Anion-tr 50.7 16 0.00035 37.7 3.6 38 85-129 1-40 (305)
228 PRK13398 3-deoxy-7-phosphohept 50.4 2.1E+02 0.0045 29.0 11.4 103 401-506 27-142 (266)
229 PRK13932 stationary phase surv 50.3 17 0.00037 36.5 3.5 40 83-130 4-43 (257)
230 PLN02572 UDP-sulfoquinovose sy 49.5 21 0.00045 39.1 4.5 35 81-125 44-78 (442)
231 TIGR01007 eps_fam capsular exo 49.5 24 0.00052 33.8 4.5 41 83-127 15-55 (204)
232 PRK13396 3-deoxy-7-phosphohept 49.0 3.5E+02 0.0075 28.6 13.3 104 399-506 99-216 (352)
233 PRK06487 glycerate dehydrogena 48.7 38 0.00083 35.2 6.1 81 429-511 148-239 (317)
234 PF06564 YhjQ: YhjQ protein; 48.1 23 0.0005 35.2 4.1 37 85-127 1-39 (243)
235 PRK00048 dihydrodipicolinate r 48.1 47 0.001 33.3 6.5 42 468-509 54-95 (257)
236 PF09949 DUF2183: Uncharacteri 47.0 57 0.0012 27.7 5.7 32 428-459 63-94 (100)
237 TIGR01281 DPOR_bchL light-inde 47.0 19 0.0004 36.2 3.4 35 85-127 1-37 (268)
238 COG1553 DsrE Uncharacterized c 46.1 37 0.00081 29.8 4.5 40 85-127 1-41 (126)
239 TIGR00087 surE 5'/3'-nucleotid 44.9 22 0.00047 35.5 3.4 38 85-130 1-38 (244)
240 PF04392 ABC_sub_bind: ABC tra 44.3 3.6E+02 0.0077 27.4 13.3 93 413-505 115-218 (294)
241 PLN02928 oxidoreductase family 44.1 50 0.0011 34.8 6.2 46 466-511 218-268 (347)
242 cd00027 BRCT Breast Cancer Sup 44.0 73 0.0016 23.5 5.7 64 430-505 2-65 (72)
243 PRK09271 flavodoxin; Provision 43.8 36 0.00078 31.3 4.5 37 85-126 1-37 (160)
244 PRK07236 hypothetical protein; 43.7 22 0.00047 37.9 3.5 36 81-127 3-38 (386)
245 PRK09739 hypothetical protein; 43.4 40 0.00087 32.2 5.0 43 82-127 1-43 (199)
246 PRK13243 glyoxylate reductase; 43.0 58 0.0012 34.1 6.4 44 468-511 198-246 (333)
247 TIGR01425 SRP54_euk signal rec 42.0 4.9E+02 0.011 28.3 13.3 157 416-581 169-340 (429)
248 TIGR01380 glut_syn glutathione 41.9 23 0.00049 36.7 3.2 40 85-127 1-40 (312)
249 PRK13849 putative crown gall t 41.9 28 0.00062 34.3 3.7 37 85-127 1-39 (231)
250 TIGR01915 npdG NADPH-dependent 41.7 29 0.00062 33.8 3.7 33 85-127 1-33 (219)
251 COG1052 LdhA Lactate dehydroge 41.1 73 0.0016 33.2 6.7 44 468-511 194-242 (324)
252 PRK10840 transcriptional regul 41.0 3.2E+02 0.007 25.9 12.6 110 429-550 3-126 (216)
253 PRK05708 2-dehydropantoate 2-r 40.7 31 0.00067 35.6 3.9 33 84-127 2-34 (305)
254 PRK15409 bifunctional glyoxyla 40.4 70 0.0015 33.3 6.5 44 468-511 194-242 (323)
255 cd02040 NifH NifH gene encodes 40.1 30 0.00065 34.6 3.7 28 100-127 9-38 (270)
256 PRK13869 plasmid-partitioning 39.9 30 0.00064 37.4 3.7 39 83-127 119-159 (405)
257 PRK07454 short chain dehydroge 39.5 35 0.00076 33.3 4.0 36 83-127 4-39 (241)
258 TIGR03453 partition_RepA plasm 38.7 33 0.00072 36.7 3.9 40 82-127 101-142 (387)
259 PF02441 Flavoprotein: Flavopr 38.7 41 0.00088 29.7 3.9 36 85-127 1-36 (129)
260 PRK03692 putative UDP-N-acetyl 38.7 1.1E+02 0.0024 30.5 7.3 99 413-514 89-197 (243)
261 PRK06756 flavodoxin; Provision 38.6 48 0.001 29.9 4.4 38 85-127 2-39 (148)
262 PLN02306 hydroxypyruvate reduc 38.6 71 0.0015 34.2 6.3 45 467-511 229-278 (386)
263 PRK15438 erythronate-4-phospha 38.5 78 0.0017 33.8 6.5 81 429-511 116-213 (378)
264 PRK13933 stationary phase surv 38.4 30 0.00066 34.6 3.3 38 85-130 1-38 (253)
265 PF00551 Formyl_trans_N: Formy 37.9 3E+02 0.0065 25.8 9.9 27 85-120 1-27 (181)
266 PRK14619 NAD(P)H-dependent gly 37.9 37 0.00079 35.0 4.0 35 82-127 2-36 (308)
267 COG4635 HemG Flavodoxin [Energ 37.6 43 0.00092 30.9 3.7 38 85-127 1-38 (175)
268 COG4088 Predicted nucleotide k 37.6 25 0.00055 34.0 2.4 40 85-129 1-40 (261)
269 PRK06015 keto-hydroxyglutarate 37.2 3.4E+02 0.0073 26.2 10.1 70 414-483 14-85 (201)
270 TIGR00959 ffh signal recogniti 36.9 5.9E+02 0.013 27.7 13.3 82 487-581 255-340 (428)
271 TIGR03012 sulf_tusD_dsrE sulfu 36.8 55 0.0012 29.0 4.4 39 86-127 1-40 (127)
272 PRK13185 chlL protochlorophyll 36.6 36 0.00078 34.2 3.6 28 100-127 10-39 (270)
273 PLN02695 GDP-D-mannose-3',5'-e 36.6 39 0.00084 35.8 4.0 35 83-127 20-54 (370)
274 PRK05920 aromatic acid decarbo 36.5 58 0.0013 31.5 4.8 37 84-127 3-39 (204)
275 PRK05866 short chain dehydroge 36.3 54 0.0012 33.4 4.9 39 79-127 35-73 (293)
276 PF01081 Aldolase: KDPG and KH 36.2 2.5E+02 0.0054 27.0 9.0 68 416-483 20-89 (196)
277 PRK13935 stationary phase surv 36.2 34 0.00074 34.2 3.2 38 85-130 1-38 (253)
278 PRK13671 hypothetical protein; 36.1 1.2E+02 0.0026 31.2 7.2 37 402-438 2-40 (298)
279 TIGR00639 PurN phosphoribosylg 35.7 73 0.0016 30.4 5.3 34 85-127 1-36 (190)
280 PF09140 MipZ: ATPase MipZ; I 35.5 39 0.00084 33.7 3.4 36 86-127 1-38 (261)
281 COG2204 AtoC Response regulato 35.2 6.2E+02 0.013 27.9 12.8 107 431-550 6-122 (464)
282 PRK13232 nifH nitrogenase redu 35.1 35 0.00076 34.4 3.2 28 100-127 9-38 (273)
283 TIGR02069 cyanophycinase cyano 35.0 4.6E+02 0.01 26.1 11.2 104 406-509 4-127 (250)
284 COG0496 SurE Predicted acid ph 34.9 37 0.00079 33.9 3.2 38 85-130 1-38 (252)
285 PRK05718 keto-hydroxyglutarate 34.5 3.1E+02 0.0066 26.7 9.5 88 412-502 23-112 (212)
286 PRK12827 short chain dehydroge 34.4 50 0.0011 32.1 4.2 35 82-126 4-38 (249)
287 PRK12480 D-lactate dehydrogena 34.4 91 0.002 32.6 6.3 44 468-511 192-240 (330)
288 TIGR01182 eda Entner-Doudoroff 34.2 4.1E+02 0.009 25.6 10.2 70 414-483 18-89 (204)
289 PRK05246 glutathione synthetas 34.1 35 0.00076 35.4 3.1 40 85-127 2-41 (316)
290 TIGR03371 cellulose_yhjQ cellu 34.0 42 0.00091 33.0 3.6 37 85-127 1-39 (246)
291 PF12683 DUF3798: Protein of u 33.9 2.4E+02 0.0052 28.5 8.6 98 386-490 23-121 (275)
292 PRK00346 surE 5'(3')-nucleotid 33.4 42 0.00091 33.6 3.3 38 85-130 1-38 (250)
293 PRK13934 stationary phase surv 33.3 41 0.0009 33.9 3.3 38 85-130 1-38 (266)
294 cd01080 NAD_bind_m-THF_DH_Cycl 33.3 2.7E+02 0.0059 25.9 8.6 79 416-499 29-110 (168)
295 PRK05653 fabG 3-ketoacyl-(acyl 33.1 52 0.0011 31.8 4.1 36 82-127 3-38 (246)
296 cd05565 PTS_IIB_lactose PTS_II 33.1 1.9E+02 0.0041 24.4 6.8 73 432-505 4-79 (99)
297 CHL00194 ycf39 Ycf39; Provisio 32.9 41 0.00088 34.7 3.4 27 101-127 7-33 (317)
298 PRK01372 ddl D-alanine--D-alan 32.9 59 0.0013 33.2 4.6 44 82-127 2-45 (304)
299 COG0541 Ffh Signal recognition 32.9 6.8E+02 0.015 27.3 16.7 164 405-581 158-340 (451)
300 PF05686 Glyco_transf_90: Glyc 32.8 1.5E+02 0.0033 31.8 7.8 50 535-586 268-320 (395)
301 PRK13235 nifH nitrogenase redu 32.5 44 0.00096 33.7 3.5 28 100-127 9-38 (274)
302 PHA02519 plasmid partition pro 32.4 48 0.001 35.5 3.8 39 82-126 103-143 (387)
303 COG0300 DltE Short-chain dehyd 32.2 61 0.0013 32.7 4.3 37 84-129 5-41 (265)
304 PF03721 UDPG_MGDP_dh_N: UDP-g 32.1 57 0.0012 31.0 3.9 32 85-127 1-32 (185)
305 PRK05647 purN phosphoribosylgl 32.0 76 0.0016 30.6 4.8 34 85-127 2-37 (200)
306 PF02525 Flavodoxin_2: Flavodo 31.9 57 0.0012 31.0 4.0 41 85-127 1-42 (199)
307 TIGR00036 dapB dihydrodipicoli 31.8 1.3E+02 0.0029 30.2 6.8 37 472-508 66-102 (266)
308 CHL00200 trpA tryptophan synth 31.3 5.6E+02 0.012 25.8 13.2 121 399-524 91-232 (263)
309 PRK06522 2-dehydropantoate 2-r 31.3 52 0.0011 33.5 3.8 32 85-127 1-32 (304)
310 PRK06719 precorrin-2 dehydroge 31.3 4.1E+02 0.009 24.3 10.7 82 471-561 67-153 (157)
311 PF01408 GFO_IDH_MocA: Oxidore 31.1 2.2E+02 0.0047 24.1 7.3 68 428-505 24-93 (120)
312 PLN02778 3,5-epimerase/4-reduc 31.1 52 0.0011 33.7 3.8 33 82-124 7-39 (298)
313 PRK12921 2-dehydropantoate 2-r 31.1 56 0.0012 33.3 4.0 31 85-126 1-31 (305)
314 PRK12825 fabG 3-ketoacyl-(acyl 31.0 61 0.0013 31.4 4.2 36 82-127 4-39 (249)
315 PRK11790 D-3-phosphoglycerate 31.0 96 0.0021 33.5 5.9 45 467-511 196-245 (409)
316 PRK13397 3-deoxy-7-phosphohept 30.9 5.6E+02 0.012 25.7 13.8 94 411-506 24-130 (250)
317 TIGR01968 minD_bact septum sit 30.8 51 0.0011 32.6 3.6 28 100-127 10-39 (261)
318 PRK06753 hypothetical protein; 30.6 42 0.00091 35.3 3.1 32 85-127 1-32 (373)
319 TIGR01361 DAHP_synth_Bsub phos 30.5 5.7E+02 0.012 25.7 11.3 98 406-506 29-140 (260)
320 PRK15469 ghrA bifunctional gly 30.5 99 0.0021 32.0 5.7 45 467-511 183-232 (312)
321 PF02635 DrsE: DsrE/DsrF-like 30.5 93 0.002 26.4 4.8 40 85-127 1-43 (122)
322 COG1090 Predicted nucleoside-d 30.4 36 0.00078 34.4 2.3 31 99-129 3-33 (297)
323 PRK00211 sulfur relay protein 30.2 72 0.0016 27.9 4.0 39 85-127 2-41 (119)
324 COG1192 Soj ATPases involved i 29.9 62 0.0013 32.2 4.0 37 85-127 2-41 (259)
325 PF10649 DUF2478: Protein of u 29.4 89 0.0019 28.9 4.5 37 471-507 90-132 (159)
326 PRK06179 short chain dehydroge 29.4 62 0.0013 32.2 4.0 25 100-127 13-37 (270)
327 TIGR00670 asp_carb_tr aspartat 29.3 4.6E+02 0.01 27.0 10.3 86 387-483 140-225 (301)
328 PRK08605 D-lactate dehydrogena 29.0 1.8E+02 0.0039 30.3 7.4 44 468-511 194-242 (332)
329 PLN02662 cinnamyl-alcohol dehy 28.9 72 0.0016 32.6 4.4 27 101-127 11-37 (322)
330 COG1692 Calcineurin-like phosp 28.8 2.4E+02 0.0051 28.1 7.4 103 402-506 2-115 (266)
331 PRK13230 nitrogenase reductase 28.7 59 0.0013 32.9 3.6 28 100-127 9-38 (279)
332 KOG1429 dTDP-glucose 4-6-dehyd 28.6 79 0.0017 32.2 4.3 38 82-129 25-62 (350)
333 PF00201 UDPGT: UDP-glucoronos 28.5 19 0.00042 39.8 0.0 27 102-128 11-37 (500)
334 cd01425 RPS2 Ribosomal protein 28.5 2.3E+02 0.0051 27.0 7.5 32 473-505 126-157 (193)
335 TIGR01754 flav_RNR ribonucleot 28.4 79 0.0017 28.2 4.1 34 85-123 1-34 (140)
336 PRK07574 formate dehydrogenase 28.4 1.6E+02 0.0035 31.5 7.0 44 468-511 242-290 (385)
337 PLN02166 dTDP-glucose 4,6-dehy 28.4 55 0.0012 35.7 3.5 34 83-126 119-152 (436)
338 PF09198 T4-Gluco-transf: Bact 28.2 1.4E+02 0.0031 19.6 3.9 36 85-122 1-38 (38)
339 PRK06180 short chain dehydroge 28.0 65 0.0014 32.3 3.8 25 100-127 13-37 (277)
340 PRK06436 glycerate dehydrogena 27.9 1.8E+02 0.0039 30.0 7.0 44 468-511 167-215 (303)
341 PRK08163 salicylate hydroxylas 27.7 56 0.0012 34.7 3.4 34 83-127 3-36 (396)
342 PRK07308 flavodoxin; Validated 27.6 75 0.0016 28.5 3.8 27 100-126 12-38 (146)
343 PF00185 OTCace: Aspartate/orn 27.4 65 0.0014 29.7 3.4 37 83-128 1-37 (158)
344 COG0512 PabA Anthranilate/para 27.4 64 0.0014 30.7 3.3 33 85-127 2-34 (191)
345 PRK02122 glucosamine-6-phospha 27.3 1.1E+02 0.0024 35.2 5.9 38 84-127 369-406 (652)
346 PF13263 PHP_C: PHP-associated 27.1 31 0.00067 25.6 0.9 46 491-546 8-53 (56)
347 TIGR00853 pts-lac PTS system, 26.8 2.2E+02 0.0048 23.7 6.2 73 432-506 7-83 (95)
348 PRK13236 nitrogenase reductase 26.7 73 0.0016 32.7 3.9 38 83-127 4-43 (296)
349 PRK11104 hemG protoporphyrinog 26.6 77 0.0017 29.8 3.8 37 85-127 1-37 (177)
350 PRK05993 short chain dehydroge 26.6 76 0.0016 31.8 4.0 34 85-127 4-37 (277)
351 PRK10427 putative PTS system f 26.4 1.1E+02 0.0024 26.6 4.4 39 85-128 3-43 (114)
352 PRK05282 (alpha)-aspartyl dipe 26.0 6.5E+02 0.014 24.8 10.4 105 402-508 4-123 (233)
353 PF04230 PS_pyruv_trans: Polys 25.9 6E+02 0.013 24.4 12.5 90 412-506 189-284 (286)
354 PLN02240 UDP-glucose 4-epimera 25.8 69 0.0015 33.3 3.7 35 81-125 2-36 (352)
355 PRK06924 short chain dehydroge 25.6 71 0.0015 31.2 3.6 34 85-127 1-34 (251)
356 PRK05693 short chain dehydroge 25.4 71 0.0015 31.9 3.6 34 85-127 1-34 (274)
357 PRK08306 dipicolinate synthase 25.4 7E+02 0.015 25.5 10.9 20 106-125 13-32 (296)
358 cd03145 GAT1_cyanophycinase Ty 25.4 6.2E+02 0.014 24.4 11.2 97 414-510 14-129 (217)
359 COG3349 Uncharacterized conser 25.2 64 0.0014 35.5 3.2 32 85-127 1-32 (485)
360 PRK09730 putative NAD(P)-bindi 25.2 71 0.0015 31.0 3.5 33 85-126 1-33 (247)
361 PRK08105 flavodoxin; Provision 25.1 90 0.002 28.4 3.8 27 100-126 12-38 (149)
362 TIGR03010 sulf_tusC_dsrF sulfu 25.1 95 0.0021 26.8 3.8 38 86-127 1-39 (116)
363 PRK11064 wecC UDP-N-acetyl-D-m 25.0 78 0.0017 34.3 3.9 35 82-127 1-35 (415)
364 KOG3349 Predicted glycosyltran 25.0 2.7E+02 0.0059 25.6 6.6 94 402-505 6-107 (170)
365 cd02032 Bchl_like This family 24.9 84 0.0018 31.5 4.0 35 85-127 1-37 (267)
366 TIGR02622 CDP_4_6_dhtase CDP-g 24.9 83 0.0018 32.8 4.1 35 83-127 3-37 (349)
367 PF00389 2-Hacid_dh: D-isomer 24.7 4.7E+02 0.01 22.8 8.5 54 456-511 20-73 (133)
368 PLN00141 Tic62-NAD(P)-related 24.7 86 0.0019 30.9 4.0 34 84-127 17-50 (251)
369 KOG0068 D-3-phosphoglycerate d 24.7 3.8E+02 0.0083 28.1 8.3 79 432-512 149-243 (406)
370 COG0569 TrkA K+ transport syst 24.6 48 0.001 32.5 2.1 27 102-128 7-33 (225)
371 PRK07577 short chain dehydroge 24.6 1.1E+02 0.0024 29.4 4.7 35 83-127 2-36 (234)
372 COG0716 FldA Flavodoxins [Ener 24.5 95 0.0021 28.2 3.9 37 85-126 2-38 (151)
373 PRK13982 bifunctional SbtC-lik 24.4 1.7E+02 0.0038 32.2 6.4 38 82-127 68-106 (475)
374 COG2984 ABC-type uncharacteriz 24.4 3E+02 0.0065 28.5 7.7 121 415-549 145-278 (322)
375 TIGR03219 salicylate_mono sali 24.2 61 0.0013 34.8 2.9 31 85-126 1-32 (414)
376 PF13460 NAD_binding_10: NADH( 24.1 61 0.0013 30.0 2.6 29 100-128 4-32 (183)
377 PRK02102 ornithine carbamoyltr 23.9 8.5E+02 0.018 25.5 11.3 84 387-482 145-232 (331)
378 PLN02206 UDP-glucuronate decar 23.9 75 0.0016 34.7 3.6 33 83-125 118-150 (442)
379 PLN00198 anthocyanidin reducta 23.9 96 0.0021 32.1 4.3 27 101-127 16-42 (338)
380 PTZ00182 3-methyl-2-oxobutanat 23.9 2.9E+02 0.0064 29.2 7.9 145 407-551 30-196 (355)
381 PRK14494 putative molybdopteri 23.8 1.1E+02 0.0024 30.2 4.4 38 85-127 1-38 (229)
382 COG1233 Phytoene dehydrogenase 23.8 79 0.0017 35.0 3.8 33 82-125 1-33 (487)
383 PF00072 Response_reg: Respons 23.6 4E+02 0.0088 21.6 9.1 100 433-545 2-112 (112)
384 PRK13705 plasmid-partitioning 23.5 87 0.0019 33.5 3.9 36 84-125 105-142 (388)
385 PRK07538 hypothetical protein; 23.5 65 0.0014 34.6 3.0 32 85-127 1-32 (413)
386 TIGR00288 conserved hypothetic 23.4 3E+02 0.0065 25.5 6.8 66 412-481 88-155 (160)
387 COG1763 MobB Molybdopterin-gua 23.2 1.2E+02 0.0025 28.3 4.1 40 85-129 2-41 (161)
388 PRK10538 malonic semialdehyde 23.1 1.1E+02 0.0024 30.0 4.4 33 85-127 1-33 (248)
389 PRK07364 2-octaprenyl-6-methox 23.0 94 0.002 33.2 4.2 33 84-127 18-50 (415)
390 TIGR03029 EpsG chain length de 23.0 1.3E+02 0.0028 30.2 4.9 40 84-127 102-141 (274)
391 PRK08229 2-dehydropantoate 2-r 23.0 88 0.0019 32.5 3.8 32 85-127 3-34 (341)
392 PRK06182 short chain dehydroge 23.0 1.2E+02 0.0026 30.2 4.7 25 100-127 12-36 (273)
393 PRK04148 hypothetical protein; 22.8 1.1E+02 0.0023 27.6 3.6 32 84-127 17-48 (134)
394 PRK00257 erythronate-4-phospha 22.7 3.3E+02 0.0071 29.1 8.0 82 428-511 115-213 (381)
395 PF00070 Pyr_redox: Pyridine n 22.6 71 0.0015 25.3 2.3 24 104-127 8-31 (80)
396 TIGR03018 pepcterm_TyrKin exop 22.5 1.3E+02 0.0028 28.8 4.6 40 84-127 34-74 (207)
397 PRK14569 D-alanyl-alanine synt 22.5 1.2E+02 0.0027 30.9 4.7 43 82-126 1-43 (296)
398 TIGR01327 PGDH D-3-phosphoglyc 22.5 2.1E+02 0.0045 32.1 6.7 44 468-511 187-235 (525)
399 PRK13304 L-aspartate dehydroge 22.3 2.6E+02 0.0057 28.0 7.0 40 470-509 57-96 (265)
400 PRK06703 flavodoxin; Provision 22.2 1.3E+02 0.0028 27.1 4.4 38 85-127 2-39 (151)
401 PRK09004 FMN-binding protein M 22.1 1.1E+02 0.0024 27.7 3.8 26 100-125 12-37 (146)
402 PF00533 BRCT: BRCA1 C Terminu 22.0 1.2E+02 0.0027 23.2 3.7 66 428-505 7-72 (78)
403 COG2102 Predicted ATPases of P 21.9 6.3E+02 0.014 24.8 8.9 85 401-488 61-149 (223)
404 PRK07588 hypothetical protein; 21.9 75 0.0016 33.8 3.1 32 85-127 1-32 (391)
405 PRK05562 precorrin-2 dehydroge 21.8 7.7E+02 0.017 24.2 12.8 89 417-514 36-126 (223)
406 PLN03007 UDP-glucosyltransfera 21.8 1.1E+02 0.0025 33.7 4.5 39 84-128 5-43 (482)
407 PRK04155 chaperone protein Hch 21.6 2E+02 0.0044 29.4 5.9 45 83-127 48-99 (287)
408 PLN02896 cinnamyl-alcohol dehy 21.5 96 0.0021 32.4 3.8 34 83-126 9-42 (353)
409 PRK10675 UDP-galactose-4-epime 21.5 83 0.0018 32.5 3.2 31 85-125 1-31 (338)
410 PRK08849 2-octaprenyl-3-methyl 21.5 83 0.0018 33.4 3.3 34 83-127 2-35 (384)
411 PF13614 AAA_31: AAA domain; P 21.4 1.5E+02 0.0032 26.6 4.5 29 100-128 11-39 (157)
412 cd02071 MM_CoA_mut_B12_BD meth 21.3 4.3E+02 0.0094 22.8 7.3 38 402-439 53-91 (122)
413 PRK00124 hypothetical protein; 21.3 2.2E+02 0.0048 26.1 5.5 85 432-517 3-87 (151)
414 COG1712 Predicted dinucleotide 21.3 2.7E+02 0.0059 27.4 6.3 73 429-511 25-97 (255)
415 PRK06719 precorrin-2 dehydroge 21.3 67 0.0014 29.6 2.2 34 83-127 12-45 (157)
416 PLN03209 translocon at the inn 21.1 2E+02 0.0044 32.5 6.2 33 86-127 81-113 (576)
417 COG2894 MinD Septum formation 21.1 92 0.002 30.5 3.1 36 86-127 3-40 (272)
418 PRK08177 short chain dehydroge 21.1 1E+02 0.0022 29.7 3.6 34 85-127 1-34 (225)
419 PRK08703 short chain dehydroge 21.0 1.1E+02 0.0023 29.8 3.7 25 100-127 15-39 (239)
420 TIGR00561 pntA NAD(P) transhyd 20.9 7.8E+02 0.017 27.5 10.6 74 469-550 242-328 (511)
421 PRK05723 flavodoxin; Provision 20.8 1.3E+02 0.0029 27.4 4.0 36 85-125 1-36 (151)
422 PRK06953 short chain dehydroge 20.7 94 0.002 29.8 3.3 34 85-127 1-34 (222)
423 PRK10569 NAD(P)H-dependent FMN 20.7 1.6E+02 0.0034 28.1 4.7 40 85-127 1-40 (191)
424 PRK07102 short chain dehydroge 20.6 1E+02 0.0023 29.9 3.6 25 100-127 10-34 (243)
425 PRK13931 stationary phase surv 20.6 1E+02 0.0023 31.0 3.5 39 85-130 1-42 (261)
426 cd05564 PTS_IIB_chitobiose_lic 20.3 3.9E+02 0.0085 22.1 6.5 72 432-505 3-78 (96)
427 COG2120 Uncharacterized protei 20.2 1.2E+02 0.0026 30.0 3.9 43 82-130 8-50 (237)
428 COG2085 Predicted dinucleotide 20.1 71 0.0015 31.0 2.1 28 101-128 7-34 (211)
429 PRK09126 hypothetical protein; 20.1 88 0.0019 33.1 3.1 34 82-126 1-34 (392)
430 PRK06101 short chain dehydroge 20.1 1.1E+02 0.0024 29.7 3.7 34 85-127 1-34 (240)
No 1
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.5e-68 Score=593.08 Aligned_cols=468 Identities=33% Similarity=0.565 Sum_probs=393.3
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCC-----ceEEEEEeCCEEeeEEEEE
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT-----DVVIELKVGDKIEKVRFFH 156 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 156 (609)
.++|||+||++|+.|+.++||++++++.|+++|+++||+|.||+|.|+.....+.. .......+++.....++++
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 46899999999999999999999999999999999999999999999876522111 1122223444344578888
Q ss_pred eeEcCeeEEEEeC--c-chhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEec
Q 007300 157 CHKRGVDRVFVDH--P-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVAN 233 (609)
Q Consensus 157 ~~~~gv~~~~v~~--~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h 233 (609)
...+||+++||++ + .|+.+ ..+|| |.|+..||.+||+++++++...++ +|||| |+|
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R------~~iYg------~~Dn~~RF~~FsrAaLe~~~~~~~--------~PDII-H~H 617 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWR------AQYYG------EHDDFKRFSYFSRAALELLYQSGK--------KPDII-HCH 617 (977)
T ss_pred EEECCeeEEEEecCCchhccCC------CCCCC------CccHHHHHHHHHHHHHHHHHhcCC--------CCCEE-EEC
Confidence 8889999999984 3 26665 57886 789999999999999999988754 49999 999
Q ss_pred ccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhh
Q 007300 234 DWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGIL 313 (609)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 313 (609)
||++++++.+++..|...+ +.++|+|+||||+.|||.|+...+..++++..++...+..... +...+++++.++.
T Consensus 618 DW~TaLV~pll~~~y~~~~-~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~----~~~~iN~LK~GIv 692 (977)
T PLN02939 618 DWQTAFVAPLYWDLYAPKG-FNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDN----AHGRINVVKGAIV 692 (977)
T ss_pred CccHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhc----cCCchHHHHHHHH
Confidence 9999998655555454433 4788999999999999999888877788876654322111111 2346899999999
Q ss_pred cCCEEEeeCHHHHHHHhcccCCCccchhhhc--cCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 314 ESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 314 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
.||.|+|||+.|++++.. .+|..++..+. ..++.+|+||+|.+.|+|.++++|+.+|+..++ .+|..++.+++++
T Consensus 693 ~AD~VtTVSptYA~EI~t--e~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl-~GK~~nK~aLRke 769 (977)
T PLN02939 693 YSNIVTTVSPTYAQEVRS--EGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDL-QGKAANKAALRKQ 769 (977)
T ss_pred hCCeeEeeeHHHHHHHHH--HhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhh-hhhhhhhHHHHHH
Confidence 999999999999999986 35555555443 458999999999999999999999999999996 6999999999999
Q ss_pred hCCCCC-CCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC-hhhHHHHHHHHHhCC--CceEEEeecChHH
Q 007300 392 VGLPVD-RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYP--EKARGVAKFNIPL 467 (609)
Q Consensus 392 ~gl~~~-~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~-~~~~~~l~~l~~~~~--~~v~~~~~~~~~~ 467 (609)
+|++.+ ++.|+|+|+||+.++||++.+++|+..+.+.+++|+|+|+|+ +.+++.++++..+++ ++|.+.+.++...
T Consensus 770 lGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~l 849 (977)
T PLN02939 770 LGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEAL 849 (977)
T ss_pred hCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHH
Confidence 999864 567999999999999999999999998877789999999996 456788888888775 4688888889888
Q ss_pred HHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccccccc---------CcceeEecccccccccCCCCCHH
Q 007300 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---------GFTGFQMGSFSVDCEAVDPVDVA 538 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~---------~~~G~l~~~~~~~~~~v~~~d~~ 538 (609)
.+.+|++||++|+||++|+||++++|||+||+|||++++||+.|+|.+ +.|||+| ++.|++
T Consensus 850 ah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf----------~~~D~e 919 (977)
T PLN02939 850 SHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF----------LTPDEQ 919 (977)
T ss_pred HHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe----------cCCCHH
Confidence 889999999999999999999999999999999999999999999875 5799988 999999
Q ss_pred HHHHHHHHHHHhh--CHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHcC
Q 007300 539 AVSTTVRRALATY--GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG 588 (609)
Q Consensus 539 ~la~~I~~ll~~~--~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~~~ 588 (609)
+++++|.+++..+ +++.+.+|+++++.++|||+.++++|+++|++++..+
T Consensus 920 aLa~AL~rAL~~~~~dpe~~~~L~~~am~~dFSWe~~A~qYeeLY~~ll~~~ 971 (977)
T PLN02939 920 GLNSALERAFNYYKRKPEVWKQLVQKDMNIDFSWDSSASQYEELYQRAVARA 971 (977)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999998743 3678899999999999999999999999999998643
No 2
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=6.4e-67 Score=571.12 Aligned_cols=467 Identities=38% Similarity=0.610 Sum_probs=387.2
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCce-EEEEEeCCEEeeEEEEEeeEc
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDV-VIELKVGDKIEKVRFFHCHKR 160 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (609)
|++|||+||++|+.|+.|+||++++++.|+++|+++||+|.|+.|.|++..+...... ...+.+.. ....++++...+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 79 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLF-GGPARLLAARAG 79 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeC-CceEEEEEEEeC
Confidence 5789999999999999999999999999999999999999999999998854432221 11221110 114677888889
Q ss_pred CeeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchH
Q 007300 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLI 240 (609)
Q Consensus 161 gv~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~ 240 (609)
||+++|++++.|+.+ ...+|+...|.+|.|+..||.+||++++++++.+... .+|||| |+|||+++++
T Consensus 80 ~v~~~~~~~~~~f~r-----~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~------~~pDIi-H~Hdw~~~l~ 147 (485)
T PRK14099 80 GLDLFVLDAPHLYDR-----PGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPG------FVPDIV-HAHDWQAGLA 147 (485)
T ss_pred CceEEEEeChHhhCC-----CCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccC------CCCCEE-EECCcHHHHH
Confidence 999999999999886 1248988778889999999999999999988764211 159999 9999999999
Q ss_pred HHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEe
Q 007300 241 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 320 (609)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 320 (609)
|.+++...+ .++|+|+|+||+.+|+.++...+..++++...+.. ++. .+...+++++.++..||.|++
T Consensus 148 ~~~l~~~~~-----~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~k~~i~~ad~vit 215 (485)
T PRK14099 148 PAYLHYSGR-----PAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSL----DGV---EYYGGIGYLKAGLQLADRITT 215 (485)
T ss_pred HHHHHhCCC-----CCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCc----hhh---hhCCCccHHHHHHHhcCeeee
Confidence 998874221 46899999999999999887777777776544321 111 112345789999999999999
Q ss_pred eCHHHHHHHhcccCCCccchhhh--ccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCC
Q 007300 321 VSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 398 (609)
Q Consensus 321 vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~ 398 (609)
||+.+++++.+ ..+|..++..+ +..++.+|+||+|.+.|+|.+++.+..+|+..++ .++..++..+++++|++.++
T Consensus 216 VS~~~a~ei~~-~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~~~ 293 (485)
T PRK14099 216 VSPTYALEIQG-PEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETL-AARAANKAALQARFGLDPDP 293 (485)
T ss_pred cChhHHHHHhc-ccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHH-HhHHHhHHHHHHHcCCCccc
Confidence 99999999985 23344333333 2348999999999999999999999999998885 67888889999999998777
Q ss_pred CCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEE
Q 007300 399 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 399 ~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
+.++|+++||+.++||++.|++|++.+.+.+++|+|+|+|++.+++.++++..++++++..+.+++.+..+.++++||++
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDif 373 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADAL 373 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEE
Confidence 78999999999999999999999999977789999999998778889999988887777666777666665556789999
Q ss_pred EecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccC---------cceeEecccccccccCCCCCHHHHHHHHHHH--
Q 007300 479 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG---------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA-- 547 (609)
Q Consensus 479 v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~---------~~G~l~~~~~~~~~~v~~~d~~~la~~I~~l-- 547 (609)
++||++|+||++++|||+||+|||++++||+.|+|.++ .+|+++ ++.|+++++++|.++
T Consensus 374 v~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~----------~~~d~~~La~ai~~a~~ 443 (485)
T PRK14099 374 LVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF----------SPVTADALAAALRKTAA 443 (485)
T ss_pred EECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe----------CCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875 689987 999999999999984
Q ss_pred -HHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHc
Q 007300 548 -LATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVA 587 (609)
Q Consensus 548 -l~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~~ 587 (609)
+++ ++.+.+|+++++.++|||+.++++|+++|++++..
T Consensus 444 l~~d--~~~~~~l~~~~~~~~fSw~~~a~~y~~lY~~l~~~ 482 (485)
T PRK14099 444 LFAD--PVAWRRLQRNGMTTDVSWRNPAQHYAALYRSLVAE 482 (485)
T ss_pred HhcC--HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh
Confidence 444 67889999999999999999999999999999754
No 3
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=2e-66 Score=567.79 Aligned_cols=467 Identities=29% Similarity=0.576 Sum_probs=391.1
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCcccc-CCC-c----eEEEEEeCCEEeeEEEEEee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDA-WDT-D----VVIELKVGDKIEKVRFFHCH 158 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~-~~~-~----~~~~~~~~~~~~~~~~~~~~ 158 (609)
|||+||++|+.|+.|+||++++++.|+++|+++||+|.|+.|.|..+.+. +.. . ..+.+.+++.....+.....
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVTA 85 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999987653 211 1 11223333322223332322
Q ss_pred E--cCeeEEEEeCcchhhhhcCCCCCeeccCC-CCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEeccc
Q 007300 159 K--RGVDRVFVDHPWFLAKVWGKTQSKIYGPR-TGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDW 235 (609)
Q Consensus 159 ~--~gv~~~~v~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~ 235 (609)
. .||++++++++.|+.+ ..+|+.. .|.+|.|+..||.+||++++++++.+.+ +|||| |+|||
T Consensus 86 ~~~~~v~~~~~~~~~~f~r------~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~--------~pDii-H~hdw 150 (489)
T PRK14098 86 LPSSKIQTYFLYNEKYFKR------NGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGW--------KPDII-HCHDW 150 (489)
T ss_pred ccCCCceEEEEeCHHHcCC------CCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCC--------CCCEE-EecCc
Confidence 3 3799999999999887 5799876 5788999999999999999999987654 49999 99999
Q ss_pred ccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcC
Q 007300 236 HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILES 315 (609)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a 315 (609)
+++++|.+++..+.....+.++|+|+|+||+.+||.++...+..+ ++..+...+. .....+++++.++..|
T Consensus 151 ~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~-~~~~~~~~~~--------~~~~~~n~lk~~i~~a 221 (489)
T PRK14098 151 YAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKL-LPEEVCSGLH--------REGDEVNMLYTGVEHA 221 (489)
T ss_pred HHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHh-CCHHhhhhhh--------hcCCcccHHHHHHHhc
Confidence 999999999887654444568999999999999998776554433 3333221110 0123579999999999
Q ss_pred CEEEeeCHHHHHHHhcccCCCccchhhhc--cCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhC
Q 007300 316 DMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 393 (609)
Q Consensus 316 d~vi~vS~~~~~~l~~~~~~g~~~~~~~~--~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 393 (609)
|.|++||+.+++++.+...+|..++.+++ ..++.+|+||+|.+.|+|.+++.+..+|+.+++ .+|..++..+++++|
T Consensus 222 d~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~-~~k~~~k~~l~~~lg 300 (489)
T PRK14098 222 DLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERL-DGKLENKKALLEEVG 300 (489)
T ss_pred CcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchh-hhHHHHHHHHHHHhC
Confidence 99999999999999852233333444443 358999999999999999999889999998875 578888999999999
Q ss_pred CCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHH
Q 007300 394 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 394 l~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~ 473 (609)
++.+++.|+|+++||+.++||++.|++|++++.+.+++|+|+|+|+..+++.++++..++++++.+.+.++.++++.+|+
T Consensus 301 l~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a 380 (489)
T PRK14098 301 LPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA 380 (489)
T ss_pred CCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH
Confidence 99888889999999999999999999999999877999999999987788999999998888899999999999999999
Q ss_pred hCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccccccc----CcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 474 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~----~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
+||++++||++|+||++++|||+||+|||++++||+.|++.+ +.+|+++ ++.|+++++++|.++++
T Consensus 381 ~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~----------~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 381 GLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIF----------HDYTPEALVAKLGEALA 450 (489)
T ss_pred hCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEe----------CCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998864 6799987 99999999999999875
Q ss_pred hh-CHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 007300 550 TY-GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 550 ~~-~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
.+ +++.+.+++++++.++|||+.++++|+++|++++.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~fsw~~~a~~y~~lY~~~~~ 488 (489)
T PRK14098 451 LYHDEERWEELVLEAMERDFSWKNSAEEYAQLYRELLG 488 (489)
T ss_pred HHcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhc
Confidence 43 25788889998899999999999999999998863
No 4
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=1.1e-62 Score=540.33 Aligned_cols=459 Identities=45% Similarity=0.775 Sum_probs=392.2
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCC----CceEEEEEeCCEEeeEEEEEeeEc
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWD----TDVVIELKVGDKIEKVRFFHCHKR 160 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 160 (609)
|||++|+.|++|+.++||+++++.+|+++|+++||+|+|++|.|+...+.+. ......+.+++....+++++...+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999998765433 234455667777888899999999
Q ss_pred CeeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchH
Q 007300 161 GVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLI 240 (609)
Q Consensus 161 gv~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~ 240 (609)
|+++++++++.++.+ ...+|+. +|.++..||.+|+++++++++..+. +|||| |+|+|+++++
T Consensus 81 ~v~~~~i~~~~~~~r-----~~~~y~~----~~~d~~~r~~~f~~a~~~~~~~~~~--------~~Dii-H~hdw~~~~~ 142 (473)
T TIGR02095 81 GVPVYFIDNPSLFDR-----PGGIYGD----DYPDNAERFAFFSRAAAELLSGLGW--------QPDVV-HAHDWHTALV 142 (473)
T ss_pred CceEEEEECHHHcCC-----CCCCCCC----CCCCHHHHHHHHHHHHHHHHHhcCC--------CCCEE-EECCcHHHHH
Confidence 999999999987764 1247864 6899999999999999999887654 49999 9999999999
Q ss_pred HHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEe
Q 007300 241 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 320 (609)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 320 (609)
+.+++..++. .++|+|+|+|+..++|.++...+..++++..+... +.+. ....+++++.++..||.|++
T Consensus 143 ~~~l~~~~~~----~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~k~~~~~ad~v~t 211 (473)
T TIGR02095 143 PALLKAVYRP----NPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHM----EGLE---FYGRVNFLKGGIVYADRVTT 211 (473)
T ss_pred HHHHHhhccC----CCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCc----hhhh---cCCchHHHHHHHHhCCcCee
Confidence 9999876421 14899999999999998887666666666443221 1111 11357899999999999999
Q ss_pred eCHHHHHHHhcccCCCccchhhh--ccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCC
Q 007300 321 VSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDR 398 (609)
Q Consensus 321 vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~ 398 (609)
||+.+++++.. ..+|..++.++ +..++.+|+||+|.+.|+|..++++..+|+..++ ..+...+..+++++|++.++
T Consensus 212 VS~~~~~ei~~-~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~~~ 289 (473)
T TIGR02095 212 VSPTYAREILT-PEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDL-AGKAENKEALQEELGLPVDD 289 (473)
T ss_pred cCHhHHHHhcC-CcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccch-hhhhhhHHHHHHHcCCCccC
Confidence 99999999985 23444433322 2458999999999999999999899999998765 46777788999999999866
Q ss_pred CCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEE
Q 007300 399 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 399 ~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
+.++|+|+||+.++||++.+++|++++.+.+++|+|+|+|++.+++.++++..+++.++.+...++.+.++.++++||++
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~ 369 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFI 369 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEE
Confidence 78999999999999999999999999987789999999998778889999998888888888899999888999999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccC------cceeEecccccccccCCCCCHHHHHHHHHHHHHhh-
Q 007300 479 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY- 551 (609)
Q Consensus 479 v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~------~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~- 551 (609)
++||++|+||++++|||+||+|||++++||+.|+|.++ .+|+++ ++.|+++++++|.+++..+
T Consensus 370 l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~----------~~~d~~~la~~i~~~l~~~~ 439 (473)
T TIGR02095 370 LMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLF----------EEYDPGALLAALSRALRLYR 439 (473)
T ss_pred EeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEe----------CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 899987 9999999999999998833
Q ss_pred -CHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 007300 552 -GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 552 -~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l 584 (609)
+++.+.+|+++++.++|||+.++++|+++|+++
T Consensus 440 ~~~~~~~~~~~~~~~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 440 QDPSLWEALQKNAMSQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred cCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhC
Confidence 267889999999989999999999999999864
No 5
>PLN02316 synthase/transferase
Probab=100.00 E-value=3.5e-62 Score=555.03 Aligned_cols=435 Identities=33% Similarity=0.560 Sum_probs=364.8
Q ss_pred cccccCCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEE
Q 007300 77 LMIVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFH 156 (609)
Q Consensus 77 ~~~~~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (609)
+.+...++|||+||+.+++|+.++||+++++..|+++|+++||+|.||+|.|+...............+......+++++
T Consensus 580 g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~ 659 (1036)
T PLN02316 580 GGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWF 659 (1036)
T ss_pred CCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEE
Confidence 34444567999999999999999999999999999999999999999999998754322111111122222223567888
Q ss_pred eeEcCeeEEEEeCc-chhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEeccc
Q 007300 157 CHKRGVDRVFVDHP-WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDW 235 (609)
Q Consensus 157 ~~~~gv~~~~v~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~ 235 (609)
...+||++++++++ .++.+ ..+|+ |.|+..||.+||++++++++...+ +|||| |+|||
T Consensus 660 ~~~~GV~vyfl~~~~~~F~r------~~~Yg------~~Dd~~RF~~F~~Aale~l~~~~~--------~PDII-HaHDW 718 (1036)
T PLN02316 660 GKVEGLSVYFLEPQNGMFWA------GCVYG------CRNDGERFGFFCHAALEFLLQSGF--------HPDII-HCHDW 718 (1036)
T ss_pred EEECCcEEEEEeccccccCC------CCCCC------chhHHHHHHHHHHHHHHHHHhcCC--------CCCEE-EECCC
Confidence 88899999999976 35554 35675 789999999999999999987654 49999 99999
Q ss_pred ccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcC
Q 007300 236 HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILES 315 (609)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a 315 (609)
++++++.+++..++..+ +.++|+|+|+|++.++ .+.++.++..|
T Consensus 719 ~talva~llk~~~~~~~-~~~~p~V~TiHnl~~~-----------------------------------~n~lk~~l~~A 762 (1036)
T PLN02316 719 SSAPVAWLFKDHYAHYG-LSKARVVFTIHNLEFG-----------------------------------ANHIGKAMAYA 762 (1036)
T ss_pred hHHHHHHHHHHhhhhhc-cCCCCEEEEeCCcccc-----------------------------------hhHHHHHHHHC
Confidence 99999999988764433 3678999999986542 13456788999
Q ss_pred CEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCC
Q 007300 316 DMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP 395 (609)
Q Consensus 316 d~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 395 (609)
|.|++||+.+++++... ..+.. +..++.+|+||||++.|+|.++++++.+|+..++..+|...+..+|+++|++
T Consensus 763 D~ViTVS~tya~EI~~~--~~l~~----~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~ 836 (1036)
T PLN02316 763 DKATTVSPTYSREVSGN--SAIAP----HLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLK 836 (1036)
T ss_pred CEEEeCCHHHHHHHHhc--cCccc----ccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCC
Confidence 99999999999999852 12211 1238999999999999999999999999999998888999999999999998
Q ss_pred CCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC-hhhHHHHHHHHHhC----CCceEEEeecChHHHHH
Q 007300 396 VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILY----PEKARGVAKFNIPLAHM 470 (609)
Q Consensus 396 ~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~-~~~~~~l~~l~~~~----~~~v~~~~~~~~~~~~~ 470 (609)
. .+.|+|+|+|||.++||++.|++|++.+.+.+++|+|+|+|+ ..+++.+++++.++ ++++.+.+.++..+.+.
T Consensus 837 ~-~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~ 915 (1036)
T PLN02316 837 Q-ADLPLVGIITRLTHQKGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHL 915 (1036)
T ss_pred c-ccCeEEEEEeccccccCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHH
Confidence 3 356999999999999999999999999877789999999985 34677777777743 56788888888888888
Q ss_pred HHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccC-------------cceeEecccccccccCCCCCH
Q 007300 471 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG-------------FTGFQMGSFSVDCEAVDPVDV 537 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~-------------~~G~l~~~~~~~~~~v~~~d~ 537 (609)
+|++||++|+||++|+||++++|||+||+|||++++||++|+|.++ .|||+| ++.|+
T Consensus 916 iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf----------~~~d~ 985 (1036)
T PLN02316 916 IYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSF----------DGADA 985 (1036)
T ss_pred HHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEe----------CCCCH
Confidence 9999999999999999999999999999999999999999999884 699988 99999
Q ss_pred HHHHHHHHHHHHhh-C-HHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 007300 538 AAVSTTVRRALATY-G-TQALAEMMKNGMAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 538 ~~la~~I~~ll~~~-~-~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
++++.+|.+++..+ + ...+.++++++|.++|||+.++++|+++|+++.
T Consensus 986 ~aLa~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a~ 1035 (1036)
T PLN02316 986 AGVDYALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSAR 1035 (1036)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 99999999999874 2 355688999999999999999999999999875
No 6
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=8.5e-62 Score=531.54 Aligned_cols=453 Identities=41% Similarity=0.674 Sum_probs=376.5
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCc-eEEEEEeCCEEeeEEEEEe--eEcC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD-VVIELKVGDKIEKVRFFHC--HKRG 161 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~g 161 (609)
|||+||+.+++|+.++||+++++.+|+++|+++||+|+|++|.|+...+..... ..... ...+++.. ..+|
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g 74 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKLRDAQVVGRL------DLFTVLFGHLEGDG 74 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhhcCceEEEEe------eeEEEEEEeEEcCC
Confidence 899999999999999999999999999999999999999999998765432111 11111 12344433 4589
Q ss_pred eeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHH
Q 007300 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIP 241 (609)
Q Consensus 162 v~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~ 241 (609)
|++++++++.++.+ ..+|+ |.++..||.+||++++++++.++. +|||| |+|+|++++++
T Consensus 75 v~v~~v~~~~~~~~------~~~y~------~~d~~~r~~~f~~~~~~~~~~~~~--------~pDii-H~h~w~~~~~~ 133 (466)
T PRK00654 75 VPVYLIDAPHLFDR------PSGYG------YPDNGERFAFFSWAAAEFAEGLDP--------RPDIV-HAHDWHTGLIP 133 (466)
T ss_pred ceEEEEeCHHHcCC------CCCCC------CcChHHHHHHHHHHHHHHHHhcCC--------CCceE-EECCcHHHHHH
Confidence 99999999888776 46775 788999999999999999887654 49999 99999999999
Q ss_pred HHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEee
Q 007300 242 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 321 (609)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~v 321 (609)
.+++..+ .. .+.++|+|+|+|+..++|.++...+..++++..+.. .+... ....+++++.++..||.|+++
T Consensus 134 ~~l~~~~-~~-~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~ad~vitv 204 (466)
T PRK00654 134 ALLKEKY-WR-GYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFH----LEGLE---FYGQISFLKAGLYYADRVTTV 204 (466)
T ss_pred HHHHHhh-hc-cCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcC----chhhh---cCCcccHHHHHHHhcCcCeee
Confidence 9998765 22 235799999999999999887766666666654321 11110 113468899999999999999
Q ss_pred CHHHHHHHhcccCCCccchhhh--ccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCC
Q 007300 322 SPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 399 (609)
Q Consensus 322 S~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 399 (609)
|+.+++++.. ..+|..++..+ +..++.+|+||+|.+.|+|.+++.+...|+..++ +++...+..+++++|++. ++
T Consensus 205 S~~~~~ei~~-~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~-~~ 281 (466)
T PRK00654 205 SPTYAREITT-PEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDL-EGKAENKRALQERFGLPD-DD 281 (466)
T ss_pred CHHHHHHhcc-ccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhh-hchHHHHHHHHHHhCCCC-CC
Confidence 9999999875 22332222222 2348999999999999999988888889998875 577888899999999983 35
Q ss_pred CcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 400 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 400 ~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
.++|+|+||+.++||++.|++|++++.+++++|+|+|+|++.+++.++++..+++.++.+...++.++++.+|++||++|
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~aDv~v 361 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAGADMFL 361 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhhCCEEE
Confidence 68999999999999999999999999777899999999987788899999998887777777888888888999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccC------cceeEecccccccccCCCCCHHHHHHHHHHHHHhhC-
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG------FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG- 552 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~------~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~- 552 (609)
+||++|+||++++|||+||+|||++++||+.|+|.++ .+|+++ ++.|+++++++|.++++.+.
T Consensus 362 ~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv----------~~~d~~~la~~i~~~l~~~~~ 431 (466)
T PRK00654 362 MPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVF----------DDFNAEDLLRALRRALELYRQ 431 (466)
T ss_pred eCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEe----------CCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999988 899987 99999999999999987442
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 007300 553 TQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 553 ~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
++.+.+++++++.++|||+.++++|+++|++++.
T Consensus 432 ~~~~~~~~~~~~~~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 432 PPLWRALQRQAMAQDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Confidence 5668889999988999999999999999998864
No 7
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.1e-58 Score=509.67 Aligned_cols=462 Identities=44% Similarity=0.739 Sum_probs=386.7
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceE----EEEEeCCEEeeEEEEEeeEcC
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVV----IELKVGDKIEKVRFFHCHKRG 161 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g 161 (609)
||+||++|++|+.++||+++++.+|+++|+++||+|+|++|.|+...+.+..... +.+...+....+++++...+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 7999999999999999999999999999999999999999999987765433222 234456667788889988999
Q ss_pred eeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHH
Q 007300 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIP 241 (609)
Q Consensus 162 v~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~ 241 (609)
|++++++++.+..+ ..+| +..+.+|.++..+|.+|+++++++++.+.. +|||| |+|||++++++
T Consensus 81 v~~~~l~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~--------~pDvi-H~hd~~t~~~~ 144 (476)
T cd03791 81 VPVYFLDNPDYFDR------PGLY-DDSGYDYEDNAERFALFSRAALELLRRLGW--------KPDII-HCHDWHTGLVP 144 (476)
T ss_pred ceEEEEcChHHcCC------CCCC-CccCCCCccHHHHHHHHHHHHHHHHHhcCC--------CCcEE-EECchHHHHHH
Confidence 99999999988775 3344 444556899999999999999999887643 59999 99999999999
Q ss_pred HHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEee
Q 007300 242 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 321 (609)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~v 321 (609)
.+++..+.. ..+.++|+|+|+|++.+++.++...+...+.+..... ..+ .......+++++.++..||.|+++
T Consensus 145 ~~l~~~~~~-~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~ad~v~~v 217 (476)
T cd03791 145 ALLKEKYAD-PFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELF---HID---GLEFYGQVNFLKAGIVYADAVTTV 217 (476)
T ss_pred HHHHHhhcc-ccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchh---hhc---ccccCCcccHHHHHHHhcCcCeec
Confidence 999877543 2346899999999999999877655544433221000 001 111234568899999999999999
Q ss_pred CHHHHHHHhcccCCCccchhhh--ccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCC
Q 007300 322 SPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 399 (609)
Q Consensus 322 S~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 399 (609)
|+.+++++.+ ..+|..++..+ +..++.+|+||+|.+.|.|..++.+...|+.+ ....+...+..+++++|++.+++
T Consensus 218 S~~~~~~i~~-~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~-~~~~~~~~k~~l~~~~g~~~~~~ 295 (476)
T cd03791 218 SPTYAREILT-PEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSAD-DLEGKAENKAALQEELGLPVDPD 295 (476)
T ss_pred CHhHHHHhCC-CCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCcc-ccccHHHHHHHHHHHcCCCcCCC
Confidence 9999999875 22333333333 23599999999999999999888888888854 44688888999999999986678
Q ss_pred CcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 400 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 400 ~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
.++|+|+||+.++||++.+++|++++.+.+++|+|+|+|.+.+++.++++..++++++.++..++.+.++.++++||+++
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~l 375 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFFL 375 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEEE
Confidence 89999999999999999999999999877799999999987788899999888777888888999888889999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCc------ceeEecccccccccCCCCCHHHHHHHHHHHHHhhC-
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF------TGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG- 552 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~------~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~- 552 (609)
+||++|+||++++|||+||+|||++++||+.|+|.++. +|+++ ++.|+++++++|.++++.+.
T Consensus 376 ~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~----------~~~~~~~l~~~i~~~l~~~~~ 445 (476)
T cd03791 376 MPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVF----------EGYNADALLAALRRALALYRD 445 (476)
T ss_pred CCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEe----------CCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988 99987 99999999999999987653
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007300 553 TQALAEMMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 553 ~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
++.+.+++++++.+.|||+.++++|+++|+
T Consensus 446 ~~~~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 446 PEAWRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 578899999999999999999999999996
No 8
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-58 Score=493.84 Aligned_cols=465 Identities=39% Similarity=0.618 Sum_probs=400.5
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCc----eEEEEEeCCEEeeEEEEEeeEc
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTD----VVIELKVGDKIEKVRFFHCHKR 160 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 160 (609)
|||++++.++.|..|+||++++++.|+++|++.||+|.|+.|.|+...+.|... ....+..+.........+..+.
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 899999999999999999999999999999999999999999999777766553 2233334443333333333333
Q ss_pred C-eeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccch
Q 007300 161 G-VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSL 239 (609)
Q Consensus 161 g-v~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~ 239 (609)
| ++.++++++.++++- +...| +|.|+..||..|++++++.+...... ..|||| |+||||+++
T Consensus 81 ~~v~~~lid~~~~f~r~----~~~~~------~~~d~~~Rf~~F~~a~~~~~~~~~~~------~~pDIv-H~hDWqt~L 143 (487)
T COG0297 81 GGVDLYLIDNPALFKRP----DSTLY------GYYDNAERFAFFSLAAAELAPLGLIS------WLPDIV-HAHDWQTGL 143 (487)
T ss_pred CCCcEEEecChhhcCcc----ccccC------CCCcHHHHHHHHHHHHHHHhhhcCCC------CCCCEE-EeecHHHHH
Confidence 3 999999988887751 12333 49999999999999999998665410 149999 999999999
Q ss_pred HHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEE
Q 007300 240 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 319 (609)
Q Consensus 240 ~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 319 (609)
+|.+++..+. -+..+|.|||+||+.+||.|+......+++|..+.. ......+ ...+++|.++..||.|.
T Consensus 144 ~~~~lk~~~~---~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~-~~~l~~~------~~~~~lK~gi~~ad~vt 213 (487)
T COG0297 144 LPAYLKQRYR---SGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYA-SFGLEFY------GQISFLKGGLYYADAVT 213 (487)
T ss_pred HHHHHhhccc---ccccCCeEEEEeeceeecccchhhHHHhcCCHHHhh-hceeeec------CcchhhhhhheeccEEE
Confidence 9999998641 126899999999999999999777788999976655 2222222 34799999999999999
Q ss_pred eeCHHHHHHHhcccCCCccchhhhcc--CCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCC
Q 007300 320 TVSPHYAQELVSGEDKGVELDNIIRK--TGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVD 397 (609)
Q Consensus 320 ~vS~~~~~~l~~~~~~g~~~~~~~~~--~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~ 397 (609)
+||+.+++++. ...+|...+..++. .+++.|.||+|...|+|.+++++..+|+..+.. ++..++..++.++|++.+
T Consensus 214 tVSptYa~Ei~-t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~-~k~~nk~~L~~~~gL~~~ 291 (487)
T COG0297 214 TVSPTYAGEIY-TPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLP-AKAENKVALQERLGLDVD 291 (487)
T ss_pred EECHHHHHhhc-cccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchh-hhHHHHHHHHHHhCCCCC
Confidence 99999999999 46787777776643 589999999999999999999999999999875 699999999999999998
Q ss_pred CCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcE
Q 007300 398 RNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 477 (609)
Q Consensus 398 ~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv 477 (609)
.+.|++.++||+..|||+|.+++++..+.+..++++++|.|+..++..+..++..+++++.....|+.+..+.+++++|+
T Consensus 292 ~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~ 371 (487)
T COG0297 292 LPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADV 371 (487)
T ss_pred CCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCE
Confidence 88899999999999999999999999999888999999999989999999999999998999999999999999999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCceEEcCCCCccccccc--------CcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 478 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--------GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 478 ~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~--------~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
+++||++||||+++++||++|+++|+..+||++|+|.+ ..|||+| .+.++++++.+|.+++.
T Consensus 372 ~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f----------~~~~~~~l~~al~rA~~ 441 (487)
T COG0297 372 ILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLF----------LQTNPDHLANALRRALV 441 (487)
T ss_pred EEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEE----------ecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 5799998 88899999999999988
Q ss_pred hhCH-HH-HHHHHHHHHHhhCCchHHHHHHHHHHHHHHHcC
Q 007300 550 TYGT-QA-LAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAG 588 (609)
Q Consensus 550 ~~~~-~~-~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~~~ 588 (609)
-+.. +. ++.+.+++|..+|||+..+++|.++|+.++...
T Consensus 442 ~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~~~~~ 482 (487)
T COG0297 442 LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKPLLSKP 482 (487)
T ss_pred HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHHHhccc
Confidence 7643 44 888999999999999999999999999998643
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=6.2e-40 Score=361.93 Aligned_cols=474 Identities=19% Similarity=0.248 Sum_probs=366.7
Q ss_pred EEEEEeecC-----CccccchHHHHhhchhHHHHhCCCeEEEEeecCCC-c-c-----c--------cCC-------C--
Q 007300 87 ILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ-Y-K-----D--------AWD-------T-- 137 (609)
Q Consensus 87 Il~vs~~~~-----P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~-~-~-----~--------~~~-------~-- 137 (609)
|++++.||. | ...||+|+..+...++++..|.....++..|.+ + . + .|+ .
T Consensus 1 ~ayf~~E~g~~~~~p-~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLP-IYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 456666654 4 357999999999999999999999999987752 1 1 1 121 1
Q ss_pred -----ceEEEEEeCCEEeeEEEEEeeEcCeeEEEEeCcchhhhhcCCCCC-eeccCCCCCCCcchHHHHHHHHHHHHHhh
Q 007300 138 -----DVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQS-KIYGPRTGEDYQDNQLRFSLLCQAALEAP 211 (609)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~r~~~~~~~~~~~~ 211 (609)
...+.+.+.++...++.++...+++++++++++......+.+..+ .+|++ |...+..++.+|+.++++.+
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~----D~~~R~~Qe~fl~~a~l~~l 155 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGG----DKEMRIAQEIVLGIGGVRAL 155 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCC----CHHHHHHHHHHHHHHHHHHH
Confidence 124677777888899999988889999999988622222323332 46763 24556666699999999999
Q ss_pred hhhccCCCCCCCCCCceEEEecccccchHHHHHHHhhcCCCc-----c--cCceEEEEEecCccCCc--ccccccc----
Q 007300 212 RILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGM-----Y--KSAKVVFCIHNIAYQGR--FAFEDFG---- 278 (609)
Q Consensus 212 ~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~-----~--~~~~~v~~iH~~~~~~~--~~~~~~~---- 278 (609)
+.+++. |||| |+||||+++++.++.+.....+. + ...+++||+|++.+||. |+...+.
T Consensus 156 ~~l~~~--------pdvi-H~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~ 226 (601)
T TIGR02094 156 RALGID--------PDVY-HLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFG 226 (601)
T ss_pred HHcCCC--------ceEE-EeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhh
Confidence 887654 9999 99999999999987543211110 1 25789999999999997 8876663
Q ss_pred ----ccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhh--ccCCeeEec
Q 007300 279 ----LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIV 352 (609)
Q Consensus 279 ----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~--~~~~i~vI~ 352 (609)
.++++..+...... ..+-....+++++.++..||.|.+||+.+.+..... ++ .....+ +..++..|.
T Consensus 227 ~~~~~~gl~~~~~~~~~~----~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l--~~-~l~~~~~~~~~~i~gIt 299 (601)
T TIGR02094 227 DYAANLGLPREQLLALGR----ENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKM--WQ-FLYPGYEEEEVPIGYVT 299 (601)
T ss_pred hhhhHhCCCHHHHHhhhh----hccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHH--HH-hhhhhcccccCCcccee
Confidence 35666544332211 100001357999999999999999999999843320 11 000111 123689999
Q ss_pred CCCCCCCcCCCCccccccccCcch---------------------hcccchHHHHHHHH---------------------
Q 007300 353 NGMDVQEWNPLTDKYIGVKYDAST---------------------VMDAKPLLKEALQA--------------------- 390 (609)
Q Consensus 353 nGvd~~~~~p~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~--------------------- 390 (609)
||||...|.|.+++.|..+|+.++ +..+|..+|.+|++
T Consensus 300 NGId~~~W~~~~~~~l~~~y~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~ 379 (601)
T TIGR02094 300 NGVHNPTWVAPELRDLYERYLGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILM 379 (601)
T ss_pred CCccccccCCHHHHHHHHHhCCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhh
Confidence 999999999999999999999877 34789999999988
Q ss_pred HhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCChh------hHHHHHHHHHh--CCCc
Q 007300 391 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGKKP------MEKQLEQLEIL--YPEK 456 (609)
Q Consensus 391 ~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~~~------~~~~l~~l~~~--~~~~ 456 (609)
++|++.+++.+++++++|+.++||++++++++.++.+ .+++|||+|++.+. +++.+.+++.+ ++++
T Consensus 380 ~~gl~~dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~k 459 (601)
T TIGR02094 380 ATDRFLDPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGR 459 (601)
T ss_pred hhccccCCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCC
Confidence 5888888999999999999999999999999988853 47999999998854 89999999988 8889
Q ss_pred eEEEeecChHHHHHHHHhCcEEEe-cCC-CCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecc--cccccccC
Q 007300 457 ARGVAKFNIPLAHMIIAGADFILI-PSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGS--FSVDCEAV 532 (609)
Q Consensus 457 v~~~~~~~~~~~~~~l~~aDv~v~-pS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~--~~~~~~~v 532 (609)
+.+...|+..+++.++++||++++ ||+ +|+||++.+-||..|.+.+++--|...|.. ++.|||.||. ...+.+..
T Consensus 460 v~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~ 538 (601)
T TIGR02094 460 IVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQ 538 (601)
T ss_pred EEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccc
Confidence 999999999999999999999999 999 999999999999999999999989888877 5689999962 11122334
Q ss_pred CCCCHHHHHHHHHHHH-Hhh-C------HHHHHHHHHHHHHh---hCCchHHHHHHHHHHH
Q 007300 533 DPVDVAAVSTTVRRAL-ATY-G------TQALAEMMKNGMAQ---DLSWKGPAKKWEETLL 582 (609)
Q Consensus 533 ~~~d~~~la~~I~~ll-~~~-~------~~~~~~~~~~~~~~---~fs~~~~a~~~~~~~~ 582 (609)
|..|+++|.++|++.+ .-+ + ++.+.++.+++|.. .|||++++++|.+.|.
T Consensus 539 d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 539 DRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 5789999999998876 322 1 34699999999988 7999999999999873
No 10
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=2.6e-39 Score=349.35 Aligned_cols=396 Identities=18% Similarity=0.184 Sum_probs=276.0
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||++|+..|+|. .||++.++.+|+++|.++||+|+|+|+... ++. |..... .......++..+|+++
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~~~-~~~-~~~~~~--------~~~~~~~~~~~~~i~v 68 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAPPY-YPQ-WRVGEG--------YSAWRYRRESEGGVTV 68 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecCCC-CCC-CCCCcc--------cccccceeeecCCeEE
Confidence 8999999998886 799999999999999999999999997621 111 110000 0001122233567888
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHh-hhhhccCCCCCCCCCCceEEEeccccc--chHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEA-PRILNLNSNKYFSGPYDVVFVANDWHT--SLIP 241 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~pDvV~h~h~~~~--~~~~ 241 (609)
+++....... .. .......+..|....... .+... .+||+| |+|.+.. ....
T Consensus 69 ~r~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~Div-~~~~p~~~~~~~~ 123 (412)
T PRK10307 69 WRCPLYVPKQ---------PS-------GLKRLLHLGSFALSSFFPLLAQRR--------WRPDRV-IGVVPTLFCAPGA 123 (412)
T ss_pred EEccccCCCC---------cc-------HHHHHHHHHHHHHHHHHHHhhccC--------CCCCEE-EEeCCcHHHHHHH
Confidence 7764311000 00 001111222222222222 22211 169999 9986433 2233
Q ss_pred HHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCc-cccccccccccCCCCCcCCchhHHHHHHhhcCCEEEe
Q 007300 242 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLP-AQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 320 (609)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 320 (609)
..+++. .++|+++++|+..++..+. .+.. ..+ +......+++..++.+|.+++
T Consensus 124 ~~~~~~-------~~~~~v~~~~d~~~~~~~~------~~~~~~~~-------------~~~~~~~~~~~~~~~ad~ii~ 177 (412)
T PRK10307 124 RLLARL-------SGARTWLHIQDYEVDAAFG------LGLLKGGK-------------VARLATAFERSLLRRFDNVST 177 (412)
T ss_pred HHHHHh-------hCCCEEEEeccCCHHHHHH------hCCccCcH-------------HHHHHHHHHHHHHhhCCEEEe
Confidence 344443 5789999999754321111 0100 000 000112356777889999999
Q ss_pred eCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCC
Q 007300 321 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 400 (609)
Q Consensus 321 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 400 (609)
+|+..++.+.+ .+.+.+ ++.+||||+|.+.|.|.... ....++++++++. +.
T Consensus 178 ~S~~~~~~~~~---~~~~~~------~i~vi~ngvd~~~~~~~~~~-----------------~~~~~~~~~~~~~--~~ 229 (412)
T PRK10307 178 ISRSMMNKARE---KGVAAE------KVIFFPNWSEVARFQPVADA-----------------DVDALRAQLGLPD--GK 229 (412)
T ss_pred cCHHHHHHHHH---cCCCcc------cEEEECCCcCHhhcCCCCcc-----------------chHHHHHHcCCCC--CC
Confidence 99999999886 455444 89999999999888764321 1345677888764 44
Q ss_pred cEEEEEeccccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHhCC-CceEEEeecChHHHHHHHHhCcEE
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP-EKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~-~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
++|+|+|++.+.||++.|++|++++.+ ++++|+|+|+|+ ..+.++++...++ .++.+.+..+.+++..+++.||++
T Consensus 230 ~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l~ivG~g~--~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~ 307 (412)
T PRK10307 230 KIVLYSGNIGEKQGLELVIDAARRLRDRPDLIFVICGQGG--GKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCH 307 (412)
T ss_pred EEEEEcCccccccCHHHHHHHHHHhccCCCeEEEEECCCh--hHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEe
Confidence 899999999999999999999998865 679999999998 5666777666543 357777767888888999999999
Q ss_pred EecCCCCC----CcHHHHHHHHcCCceEEcCCCC--cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhC
Q 007300 479 LIPSRFEP----CGLIQLHAMRYGTVPIVASTGG--LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 552 (609)
Q Consensus 479 v~pS~~E~----~gl~~lEAma~G~PvI~s~~gg--~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~ 552 (609)
++||..|+ +|.+++|||+||+|||+|+.+| +.+++. .+|+++ +++|+++++++|.+++++
T Consensus 308 v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~--~~G~~~----------~~~d~~~la~~i~~l~~~-- 373 (412)
T PRK10307 308 LLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE--GIGVCV----------EPESVEALVAAIAALARQ-- 373 (412)
T ss_pred EEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh--CCcEEe----------CCCCHHHHHHHHHHHHhC--
Confidence 99999998 5778999999999999999877 457777 589987 999999999999999987
Q ss_pred HHHHHHHHHHH---HHhhCCchHHHHHHHHHHHHHHHc
Q 007300 553 TQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLEVA 587 (609)
Q Consensus 553 ~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l~~~ 587 (609)
++.+.+|++++ +.+.|||+.++++|+++|++++.+
T Consensus 374 ~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~~~~ 411 (412)
T PRK10307 374 ALLRPKLGTVAREYAERTLDKENVLRQFIADIRGLVAE 411 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 55555565554 567899999999999999998754
No 11
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=2e-39 Score=368.16 Aligned_cols=446 Identities=17% Similarity=0.136 Sum_probs=287.6
Q ss_pred CCCceEEEEEeecCC---------ccccchHHHHhhchhHHHHhCC--CeEEEEeecCCCccccCCCceEEEEEeCCE-E
Q 007300 82 GVGLNILFVGTEVAP---------WSKTGGLGDVLGGLPPALAANG--HRVMTIAPRYDQYKDAWDTDVVIELKVGDK-I 149 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P---------~~~~GG~~~~~~~La~aL~~~G--h~V~vit~~~~~~~~~~~~~~~~~~~~~~~-~ 149 (609)
.++|.|++|+..-.| ...+||...++.+|+++|+++| |+|+|+|.......-.|+.....+.. ..+ .
T Consensus 167 ~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~-~~~~~ 245 (1050)
T TIGR02468 167 EKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEML-TPRSS 245 (1050)
T ss_pred cCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccc-ccccc
Confidence 467999999864322 2358999999999999999999 99999997744211112111111110 000 0
Q ss_pred eeEEEEEeeEcCeeEEEEeCcc---hhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhh----ccCCCCCC
Q 007300 150 EKVRFFHCHKRGVDRVFVDHPW---FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL----NLNSNKYF 222 (609)
Q Consensus 150 ~~~~~~~~~~~gv~~~~v~~~~---~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~----~~~~~~~~ 222 (609)
+.........+|+.++++.... ++.| ..-+.....|...+++.++.+ ..+-..-.
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~K------------------e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~ 307 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPK------------------EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGH 307 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCH------------------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc
Confidence 0000111123577777775321 2232 111223344555555544321 10000000
Q ss_pred CCCCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCC-ccccccccccccCCCCCcC
Q 007300 223 SGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNL-PAQFKSSFDFIDGYNKPVR 301 (609)
Q Consensus 223 ~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~ 301 (609)
...|||| |+|+|..+.++..++.. .++|+|+|.|.+.-... ......+. +..-. .+.|. .
T Consensus 308 ~~~pDvI-HaHyw~sG~aa~~L~~~-------lgVP~V~T~HSLgr~K~---~~ll~~g~~~~~~~-----~~~y~---~ 368 (1050)
T TIGR02468 308 PVWPYVI-HGHYADAGDSAALLSGA-------LNVPMVLTGHSLGRDKL---EQLLKQGRMSKEEI-----NSTYK---I 368 (1050)
T ss_pred CCCCCEE-EECcchHHHHHHHHHHh-------hCCCEEEECccchhhhh---hhhccccccccccc-----ccccc---h
Confidence 0138999 99999999999999886 59999999997532110 00000000 00000 00000 1
Q ss_pred CchhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccch--hh----h---------ccCCeeEecCCCCCCCcCCCCcc
Q 007300 302 GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELD--NI----I---------RKTGIKGIVNGMDVQEWNPLTDK 366 (609)
Q Consensus 302 ~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~--~~----~---------~~~~i~vI~nGvd~~~~~p~~~~ 366 (609)
...+..+...+..||.||++|+...+++...+. +.++. .. + ...++.|||||||+..|.|....
T Consensus 369 ~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~-~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~ 447 (1050)
T TIGR02468 369 MRRIEAEELSLDASEIVITSTRQEIEEQWGLYD-GFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGD 447 (1050)
T ss_pred HHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhc-cCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCcc
Confidence 134566788899999999999999987665321 11110 00 0 01289999999999999885321
Q ss_pred ccccccCcchh------cccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc----CCeEEEEEe
Q 007300 367 YIGVKYDASTV------MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK----ENVQIIVLG 436 (609)
Q Consensus 367 ~~~~~~~~~~~------~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~----~~~~lvivG 436 (609)
. +.... ....+.....+++.+. ++++|+|+|+||+.++||++.|++|+..+.. +++. +|+|
T Consensus 448 ~-----~~~~~~~~~~~~~~~~~~~~~l~r~~~---~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG 518 (1050)
T TIGR02468 448 M-----DGETEGNEEHPAKPDPPIWSEIMRFFT---NPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMG 518 (1050)
T ss_pred c-----cchhcccccccccccchhhHHHHhhcc---cCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEe
Confidence 0 00000 0000011123333332 2366899999999999999999999999853 3565 4668
Q ss_pred CCCh---------hhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhC----cEEEecCCCCCCcHHHHHHHHcCCce
Q 007300 437 TGKK---------PMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGA----DFILIPSRFEPCGLIQLHAMRYGTVP 501 (609)
Q Consensus 437 ~g~~---------~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~a----Dv~v~pS~~E~~gl~~lEAma~G~Pv 501 (609)
+++. .+...+.++..+++ ++|.+.+..+.++++.+|+.| |+||+||.+|+||++++|||+||+||
T Consensus 519 ~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPV 598 (1050)
T TIGR02468 519 NRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPM 598 (1050)
T ss_pred cCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCE
Confidence 7642 12345666666554 456665555777888899887 69999999999999999999999999
Q ss_pred EEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhhCCchHHHHHHHH
Q 007300 502 IVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEE 579 (609)
Q Consensus 502 I~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~ 579 (609)
|+|+.||+.|+|.++.+|+++ +|.|+++|+++|.+++++ ++.+.+|++++. .++|||+.++++|++
T Consensus 599 VASdvGG~~EII~~g~nGlLV----------dP~D~eaLA~AL~~LL~D--pelr~~m~~~gr~~v~~FSWe~ia~~yl~ 666 (1050)
T TIGR02468 599 VATKNGGPVDIHRVLDNGLLV----------DPHDQQAIADALLKLVAD--KQLWAECRQNGLKNIHLFSWPEHCKTYLS 666 (1050)
T ss_pred EEeCCCCcHHHhccCCcEEEE----------CCCCHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999999987 999999999999999998 666777776653 467999999999999
Q ss_pred HHHHHHHc
Q 007300 580 TLLNLEVA 587 (609)
Q Consensus 580 ~~~~l~~~ 587 (609)
.|..+...
T Consensus 667 ~i~~~~~~ 674 (1050)
T TIGR02468 667 RIASCRPR 674 (1050)
T ss_pred HHHHHhcc
Confidence 99988754
No 12
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=4.1e-39 Score=346.86 Aligned_cols=386 Identities=20% Similarity=0.274 Sum_probs=273.7
Q ss_pred EEEEEeecCCcc-----ccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcC
Q 007300 87 ILFVGTEVAPWS-----KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (609)
Q Consensus 87 Il~vs~~~~P~~-----~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (609)
|++++....|+. ..||.+.++.+|+++|+++||+|+|+|+........ .....+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~--------------------~~~~~~~ 60 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATRPSQPP--------------------VVEVAPG 60 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccCCCCCC--------------------ccccCCC
Confidence 566776666642 259999999999999999999999999763311110 0012346
Q ss_pred eeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHH-HHHHHHHHHH-HhhhhhccCCCCCCCCCCceEEEecccccch
Q 007300 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQL-RFSLLCQAAL-EAPRILNLNSNKYFSGPYDVVFVANDWHTSL 239 (609)
Q Consensus 162 v~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~-r~~~~~~~~~-~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~ 239 (609)
++++.+....+... ...... .+..|....+ ..++... .+||+| |+|.|..+.
T Consensus 61 ~~v~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~Dii-h~h~~~~~~ 114 (405)
T TIGR03449 61 VRVRNVVAGPYEGL-----------------DKEDLPTQLCAFTGGVLRAEARHEP--------GYYDLI-HSHYWLSGQ 114 (405)
T ss_pred cEEEEecCCCcccC-----------------CHHHHHHHHHHHHHHHHHHHhhccC--------CCCCeE-EechHHHHH
Confidence 66665532221100 000011 1112222222 2222221 259999 999988777
Q ss_pred HHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEE
Q 007300 240 IPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVL 319 (609)
Q Consensus 240 ~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi 319 (609)
++.+++.. .++|+|+++|+..... ...+.....+. ......+.+..+..+|.++
T Consensus 115 ~~~~~~~~-------~~~p~v~t~h~~~~~~---~~~~~~~~~~~----------------~~~~~~~e~~~~~~~d~vi 168 (405)
T TIGR03449 115 VGWLLRDR-------WGVPLVHTAHTLAAVK---NAALADGDTPE----------------PEARRIGEQQLVDNADRLI 168 (405)
T ss_pred HHHHHHHh-------cCCCEEEeccchHHHH---HHhccCCCCCc----------------hHHHHHHHHHHHHhcCeEE
Confidence 76666654 5889999999753200 00000000000 0011223466788999999
Q ss_pred eeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCC
Q 007300 320 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 399 (609)
Q Consensus 320 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 399 (609)
++|+...+.+... ++.+.+ ++.+|+||+|.+.|.|.. +...+.+++++. +
T Consensus 169 ~~s~~~~~~~~~~--~~~~~~------ki~vi~ngvd~~~~~~~~--------------------~~~~~~~~~~~~--~ 218 (405)
T TIGR03449 169 ANTDEEARDLVRH--YDADPD------RIDVVAPGADLERFRPGD--------------------RATERARLGLPL--D 218 (405)
T ss_pred ECCHHHHHHHHHH--cCCChh------hEEEECCCcCHHHcCCCc--------------------HHHHHHhcCCCC--C
Confidence 9999988887642 454433 899999999998886642 345677788764 4
Q ss_pred CcEEEEEeccccccCHHHHHHHHhhccc--CC--eEEEEEeCCC--h-hhHHHHHHHHHhCC--CceEEEeecChHHHHH
Q 007300 400 IPVIGFIGRLEEQKGSDILAAAIPHFIK--EN--VQIIVLGTGK--K-PMEKQLEQLEILYP--EKARGVAKFNIPLAHM 470 (609)
Q Consensus 400 ~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~--~~lvivG~g~--~-~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~ 470 (609)
.++|+|+||+.+.||++.+++|++++.+ ++ ++|+|+|++. . ...+.++++..+.+ +++.+.+..+.+++..
T Consensus 219 ~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 298 (405)
T TIGR03449 219 TKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVH 298 (405)
T ss_pred CcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHH
Confidence 5899999999999999999999999854 44 9999999642 1 34566777766654 4577777667788889
Q ss_pred HHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 471 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
+|+.||++++||..|+||++++|||++|+|||+++.||..|++.++.+|+++ +++|+++++++|.+++++
T Consensus 299 ~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~~~g~~~----------~~~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 299 VYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGLPVAVADGETGLLV----------DGHDPADWADALARLLDD 368 (405)
T ss_pred HHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCcHhhhccCCceEEC----------CCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999986 899999999999999987
Q ss_pred hCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHH
Q 007300 551 YGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 551 ~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
++.+.+|++++. .++|||+.++++|+++|.+++.
T Consensus 369 --~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~~~~ 404 (405)
T TIGR03449 369 --PRTRIRMGAAAVEHAAGFSWAATADGLLSSYRDALA 404 (405)
T ss_pred --HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 556666665543 4689999999999999998763
No 13
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=8.7e-39 Score=343.65 Aligned_cols=364 Identities=19% Similarity=0.231 Sum_probs=259.8
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|+..|.|. .||.+.++.+|+++|+++||+|.|+|+.++..... +...+|++++
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~---------------------~~~~~~i~v~ 57 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI---------------------RYLTNGLKVY 57 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc---------------------ccccCceeEE
Confidence 799999999997 89999999999999999999999999864321110 0112355555
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHH--H
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPC--Y 243 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~--~ 243 (609)
.+....+... ... . ++..+...+.+.++.. +|||| |+|++....... .
T Consensus 58 ~~p~~~~~~~-------~~~--------~----~~~~~~~~l~~~~~~~----------~~DiI-h~~~~~~~~~~~~~~ 107 (398)
T cd03796 58 YLPFVVFYNQ-------STL--------P----TFFGTFPLLRNILIRE----------RITIV-HGHQAFSALAHEALL 107 (398)
T ss_pred EecceeccCC-------ccc--------c----chhhhHHHHHHHHHhc----------CCCEE-EECCCCchHHHHHHH
Confidence 5532111100 000 0 0111112222222222 59999 999866554322 2
Q ss_pred HHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCH
Q 007300 244 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 323 (609)
Q Consensus 244 l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 323 (609)
+.+. .++|+|++.|+... .. +.. . .....+++..++.+|.++++|+
T Consensus 108 ~~~~-------~~~~~v~t~h~~~~-----~~--------~~~-~-------------~~~~~~~~~~~~~~d~ii~~s~ 153 (398)
T cd03796 108 HART-------MGLKTVFTDHSLFG-----FA--------DAS-S-------------IHTNKLLRFSLADVDHVICVSH 153 (398)
T ss_pred Hhhh-------cCCcEEEEeccccc-----cc--------chh-h-------------HHhhHHHHHhhccCCEEEEecH
Confidence 2222 58999999996421 00 000 0 0011344666789999999999
Q ss_pred HHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEE
Q 007300 324 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 403 (609)
Q Consensus 324 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i 403 (609)
...+.+... .+++.+ ++.+||||+|.+.|.|...+ .+++.++|
T Consensus 154 ~~~~~~~~~--~~~~~~------k~~vi~ngvd~~~f~~~~~~-----------------------------~~~~~~~i 196 (398)
T cd03796 154 TSKENTVLR--ASLDPE------RVSVIPNAVDSSDFTPDPSK-----------------------------RDNDKITI 196 (398)
T ss_pred hHhhHHHHH--hCCChh------hEEEEcCccCHHHcCCCccc-----------------------------CCCCceEE
Confidence 998865421 333333 89999999999888765321 12355899
Q ss_pred EEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCcEEE
Q 007300 404 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 404 ~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
+|+||+.++||++.|++|++.+.+ ++++|+|+|+|+ ..+.++++..+++ +++.+.+..+.+++..+|+.||+++
T Consensus 197 ~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v 274 (398)
T cd03796 197 VVISRLVYRKGIDLLVGIIPEICKKHPNVRFIIGGDGP--KRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFL 274 (398)
T ss_pred EEEeccchhcCHHHHHHHHHHHHhhCCCEEEEEEeCCc--hHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEE
Confidence 999999999999999999998864 689999999987 4556666666543 4677777778888889999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHH-HHHH
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQ-ALAE 558 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~-~~~~ 558 (609)
+||..|+||++++|||+||+|||+++.||..|++.++..++ .+.|+++++++|.+++++.... ...+
T Consensus 275 ~pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~~~~~------------~~~~~~~l~~~l~~~l~~~~~~~~~~~ 342 (398)
T cd03796 275 NTSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPDMILL------------AEPDVESIVRKLEEAISILRTGKHDPW 342 (398)
T ss_pred eCChhhccCHHHHHHHHcCCCEEECCCCCchhheeCCceee------------cCCCHHHHHHHHHHHHhChhhhhhHHH
Confidence 99999999999999999999999999999999998864433 4558999999999999863222 2334
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHHHHHHc
Q 007300 559 MMKNGMAQDLSWKGPAKKWEETLLNLEVA 587 (609)
Q Consensus 559 ~~~~~~~~~fs~~~~a~~~~~~~~~l~~~ 587 (609)
.+++.+.++|||+.++++|+++|++++..
T Consensus 343 ~~~~~~~~~fs~~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 343 SFHNRVKKMYSWEDVAKRTEKVYDRILQT 371 (398)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHhcC
Confidence 44555789999999999999999999864
No 14
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=1.3e-38 Score=346.23 Aligned_cols=390 Identities=19% Similarity=0.193 Sum_probs=255.4
Q ss_pred ccchHHHHhhchhHHHHhCCC--eEEEEeecCCCcc--ccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEEEEeCcchhh
Q 007300 99 KTGGLGDVLGGLPPALAANGH--RVMTIAPRYDQYK--DAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLA 174 (609)
Q Consensus 99 ~~GG~~~~~~~La~aL~~~Gh--~V~vit~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~ 174 (609)
..||+++++.+|+++|+++|| +|+|+|..++... ..+ ...++...+|++++.+.....
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~----------------~~~~~~~~~gv~v~r~~~~~~-- 85 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDY----------------AQPIERIAPGARIVRLPFGPR-- 85 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCcc----------------CCCeeEeCCCcEEEEecCCCC--
Confidence 389999999999999999997 9999997643210 000 001123346788877743110
Q ss_pred hhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHHHhhcCCCcc
Q 007300 175 KVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMY 254 (609)
Q Consensus 175 ~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~ 254 (609)
.+.. ..+-...+..+...+.+.++.... +|||| |+|.|..+++...++..
T Consensus 86 ---------~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~--------~~DvI-H~h~~~~~~~~~~~~~~------- 135 (439)
T TIGR02472 86 ---------RYLR-----KELLWPYLDELADNLLQHLRQQGH--------LPDLI-HAHYADAGYVGARLSRL------- 135 (439)
T ss_pred ---------CCcC-----hhhhhhhHHHHHHHHHHHHHHcCC--------CCCEE-EEcchhHHHHHHHHHHH-------
Confidence 0000 000001112344445555543221 49999 99998877777666654
Q ss_pred cCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCc-CCchhHHHHHHhhcCCEEEeeCHHHHHHHhccc
Q 007300 255 KSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPV-RGRKINWMKAGILESDMVLTVSPHYAQELVSGE 333 (609)
Q Consensus 255 ~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~ 333 (609)
.++|+|+|.|+...... ..+...++.... +.+.+ ....+.+++..++.+|.|+++|+...+.... .
T Consensus 136 ~~~p~V~t~H~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~-~ 202 (439)
T TIGR02472 136 LGVPLIFTGHSLGREKR---RRLLAAGLKPQQ---------IEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQYA-L 202 (439)
T ss_pred hCCCEEEecccccchhh---hhcccCCCChhh---------hhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHHHHH-h
Confidence 58899999997432100 000000000000 00000 0112345677899999999999765443321 1
Q ss_pred CCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEEEecccccc
Q 007300 334 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQK 413 (609)
Q Consensus 334 ~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~K 413 (609)
..+++++ ++.+||||+|.+.|.|.... ......+..+ ++++.+ ++.++|+|+||+.+.|
T Consensus 203 ~~~~~~~------ki~vIpnGvd~~~f~~~~~~------------~~~~~~~~~~-~~~~~~--~~~~~i~~vGrl~~~K 261 (439)
T TIGR02472 203 YDSYQPE------RMQVIPPGVDLSRFYPPQSS------------EETSEIDNLL-APFLKD--PEKPPILAISRPDRRK 261 (439)
T ss_pred ccCCCcc------ceEEECCCcChhhcCCCCcc------------ccchhHHHHH-Hhhccc--cCCcEEEEEcCCcccC
Confidence 1244444 89999999999988775321 0001112222 233333 2457999999999999
Q ss_pred CHHHHHHHHhhccc--CCeEEE-EEeCCCh--hh-------HHHHHHHHHhC--CCceEEEeecChHHHHHHHHhC----
Q 007300 414 GSDILAAAIPHFIK--ENVQII-VLGTGKK--PM-------EKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGA---- 475 (609)
Q Consensus 414 g~~~ll~a~~~l~~--~~~~lv-ivG~g~~--~~-------~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~a---- 475 (609)
|++.|++|+..+.. .+.+++ |+|+|+. .+ .+.+.++..+. .+++.+.+..+.++++.+|+.|
T Consensus 262 g~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~ 341 (439)
T TIGR02472 262 NIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSR 341 (439)
T ss_pred CHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcC
Confidence 99999999986422 234444 5687652 11 12233444443 3556666656778888899877
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHH
Q 007300 476 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA 555 (609)
Q Consensus 476 Dv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~ 555 (609)
|++|+||.+|+||++++|||+||+|||+|+.||+.|++.++.+|+++ +++|+++++++|.+++++ ++.
T Consensus 342 Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv----------~~~d~~~la~~i~~ll~~--~~~ 409 (439)
T TIGR02472 342 GIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLV----------DVLDLEAIASALEDALSD--SSQ 409 (439)
T ss_pred CEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEe----------CCCCHHHHHHHHHHHHhC--HHH
Confidence 99999999999999999999999999999999999999999999987 999999999999999998 555
Q ss_pred HHHHHHHH---HHhhCCchHHHHHHHHHHH
Q 007300 556 LAEMMKNG---MAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 556 ~~~~~~~~---~~~~fs~~~~a~~~~~~~~ 582 (609)
+.+|++++ +.++|||+.++++|+++++
T Consensus 410 ~~~~~~~a~~~~~~~fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 410 WQLWSRNGIEGVRRHYSWDAHVEKYLRILQ 439 (439)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 55555554 5789999999999998863
No 15
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=2e-38 Score=339.05 Aligned_cols=373 Identities=22% Similarity=0.276 Sum_probs=266.7
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||++|+..|+|. ..||.+.++.+|+++|.++ |+|.|++...... ..+|+++
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~~--------------------------~~~~~~~ 52 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGDQRF--------------------------DSEGLTV 52 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCCchh--------------------------cCCCeEE
Confidence 8999999998874 4599999999999999987 7888887642210 1223444
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
+.+..+..... +..... .+..... .. .... ++|+| |+|.|...+.+..+
T Consensus 53 ~~~~~~~~~~~-----------------~~~~~~---~~~~~~~-~~--~~~~-------~~div-h~~~~~~~~~~~~~ 101 (388)
T TIGR02149 53 KGYRPWSELKE-----------------ANKALG---TFSVDLA-MA--NDPV-------DADVV-HSHTWYTFLAGHLA 101 (388)
T ss_pred EEecChhhccc-----------------hhhhhh---hhhHHHH-Hh--hCCC-------CCCeE-eecchhhhhHHHHH
Confidence 33321110000 000000 1111111 11 1111 48999 99998777655554
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
+.. .++|+++++|+..+...+....+ + .++ .....+.+..+..+|.++++|+.
T Consensus 102 ~~~-------~~~p~v~~~h~~~~~~~~~~~~~---~------------~~~-----~~~~~~~~~~~~~ad~vi~~S~~ 154 (388)
T TIGR02149 102 KKL-------YDKPLVVTAHSLEPLRPWKEEQL---G------------GGY-----KLSSWAEKTAIEAADRVIAVSGG 154 (388)
T ss_pred HHh-------cCCCEEEEeeccccccccccccc---c------------cch-----hHHHHHHHHHHhhCCEEEEccHH
Confidence 433 58999999997643211110000 0 000 01123456778899999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
+++.+.+.. .++..+ ++.+||||+|...|.|.. +..++++++++. +.++|+
T Consensus 155 ~~~~~~~~~-~~~~~~------~i~vi~ng~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~i~ 205 (388)
T TIGR02149 155 MREDILKYY-PDLDPE------KVHVIYNGIDTKEYKPDD--------------------GNVVLDRYGIDR--SRPYIL 205 (388)
T ss_pred HHHHHHHHc-CCCCcc------eEEEecCCCChhhcCCCc--------------------hHHHHHHhCCCC--CceEEE
Confidence 999887521 133333 899999999998887642 455778888764 458999
Q ss_pred EEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC--hhhHHHHHHHHHhCCC---ceEEEe-ecChHHHHHHHHhCcEE
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK--KPMEKQLEQLEILYPE---KARGVA-KFNIPLAHMIIAGADFI 478 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~--~~~~~~l~~l~~~~~~---~v~~~~-~~~~~~~~~~l~~aDv~ 478 (609)
|+||+.+.||++.|++|++++. ++++++++|+|. +.+.+.++++...++. ++.++. ..+.+++..+|+.||++
T Consensus 206 ~~Grl~~~Kg~~~li~a~~~l~-~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~ 284 (388)
T TIGR02149 206 FVGRITRQKGVPHLLDAVHYIP-KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVF 284 (388)
T ss_pred EEcccccccCHHHHHHHHHHHh-hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEE
Confidence 9999999999999999999985 478899988765 3345666666554432 355544 35778888999999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCH------HHHHHHHHHHHHhhC
Q 007300 479 LIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDV------AAVSTTVRRALATYG 552 (609)
Q Consensus 479 v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~------~~la~~I~~ll~~~~ 552 (609)
++||.+|+||++++|||++|+|||+|+.||..|++.++.+|+++ +++|+ ++++++|.+++++
T Consensus 285 v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~~~~G~~~----------~~~~~~~~~~~~~l~~~i~~l~~~-- 352 (388)
T TIGR02149 285 VCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVDGETGFLV----------PPDNSDADGFQAELAKAINILLAD-- 352 (388)
T ss_pred EeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhCCCceEEc----------CCCCCcccchHHHHHHHHHHHHhC--
Confidence 99999999999999999999999999999999999999999987 88888 9999999999987
Q ss_pred HHHHHHHHHHH---HHhhCCchHHHHHHHHHHHHHH
Q 007300 553 TQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 553 ~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
++.+.+|++++ ..++|||+.+++++.++|++++
T Consensus 353 ~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y~~~~ 388 (388)
T TIGR02149 353 PELAKKMGIAGRKRAEEEFSWGSIAKKTVEMYRKVL 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 66666666655 4688999999999999999863
No 16
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=3.1e-38 Score=345.95 Aligned_cols=375 Identities=18% Similarity=0.230 Sum_probs=264.3
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcC
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (609)
+++|||+++.... |....||++.++.+|+++|.++||+|+++|+.... .+. ..|
T Consensus 56 ~~~mrI~~~~~~~-~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~-~~~------------------------~~g 109 (465)
T PLN02871 56 SRPRRIALFVEPS-PFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGV-PQE------------------------FHG 109 (465)
T ss_pred CCCceEEEEECCc-CCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCC-Ccc------------------------ccC
Confidence 6789999998543 33457999999999999999999999999986321 110 012
Q ss_pred eeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchH-
Q 007300 162 VDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLI- 240 (609)
Q Consensus 162 v~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~- 240 (609)
+.++.+.... . ..|. .....+. +...+.+.++.. +|||| |+|.......
T Consensus 110 ~~v~~~~~~~-~---------~~~~--------~~~~~~~-~~~~l~~~i~~~----------kpDiI-h~~~~~~~~~~ 159 (465)
T PLN02871 110 AKVIGSWSFP-C---------PFYQ--------KVPLSLA-LSPRIISEVARF----------KPDLI-HASSPGIMVFG 159 (465)
T ss_pred ceeeccCCcC-C---------ccCC--------Cceeecc-CCHHHHHHHHhC----------CCCEE-EECCCchhHHH
Confidence 2221110000 0 0000 0000000 001222333333 59999 9987433322
Q ss_pred HHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEe
Q 007300 241 PCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLT 320 (609)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~ 320 (609)
...+... .++|+|++.|+....- . ...... .+....+.+++...+.+|.+++
T Consensus 160 ~~~~ak~-------~~ip~V~~~h~~~~~~--~----~~~~~~---------------~~~~~~~~~~r~~~~~ad~ii~ 211 (465)
T PLN02871 160 ALFYAKL-------LCVPLVMSYHTHVPVY--I----PRYTFS---------------WLVKPMWDIIRFLHRAADLTLV 211 (465)
T ss_pred HHHHHHH-------hCCCEEEEEecCchhh--h----hcccch---------------hhHHHHHHHHHHHHhhCCEEEE
Confidence 2223332 5899999999642210 0 000000 0001122345667789999999
Q ss_pred eCHHHHHHHhcccCCCc-cchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCC
Q 007300 321 VSPHYAQELVSGEDKGV-ELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 399 (609)
Q Consensus 321 vS~~~~~~l~~~~~~g~-~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 399 (609)
+|+..++.+.+ .+. +.+ ++.+|+||+|.+.|.|... ...++.++... .++
T Consensus 212 ~S~~~~~~l~~---~~~~~~~------kv~vi~nGvd~~~f~p~~~-------------------~~~~~~~~~~~-~~~ 262 (465)
T PLN02871 212 TSPALGKELEA---AGVTAAN------RIRVWNKGVDSESFHPRFR-------------------SEEMRARLSGG-EPE 262 (465)
T ss_pred CCHHHHHHHHH---cCCCCcC------eEEEeCCccCccccCCccc-------------------cHHHHHHhcCC-CCC
Confidence 99999999986 232 222 8999999999998877532 12234444221 124
Q ss_pred CcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 400 IPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 400 ~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
.++|+|+||+.+.||++.++++++++ ++++|+|+|+|+ ..+.++++.... ++.+.+..+.+++..+|+.||++|
T Consensus 263 ~~~i~~vGrl~~~K~~~~li~a~~~~--~~~~l~ivG~G~--~~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~aDv~V 336 (465)
T PLN02871 263 KPLIVYVGRLGAEKNLDFLKRVMERL--PGARLAFVGDGP--YREELEKMFAGT--PTVFTGMLQGDELSQAYASGDVFV 336 (465)
T ss_pred CeEEEEeCCCchhhhHHHHHHHHHhC--CCcEEEEEeCCh--HHHHHHHHhccC--CeEEeccCCHHHHHHHHHHCCEEE
Confidence 58999999999999999999999988 589999999987 667777776643 477777777788889999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCCCCccccccc---CcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHH
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE---GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 556 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~---~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~ 556 (609)
+||..|+||++++|||+||+|||+++.||+.|++.+ +.+|+++ +++|+++++++|.+++++ ++.+
T Consensus 337 ~pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv----------~~~d~~~la~~i~~ll~~--~~~~ 404 (465)
T PLN02871 337 MPSESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLY----------TPGDVDDCVEKLETLLAD--PELR 404 (465)
T ss_pred ECCcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEe----------CCCCHHHHHHHHHHHHhC--HHHH
Confidence 999999999999999999999999999999999999 9999987 999999999999999987 6666
Q ss_pred HHHHHHHH--HhhCCchHHHHHHHH-HHHHHHHc
Q 007300 557 AEMMKNGM--AQDLSWKGPAKKWEE-TLLNLEVA 587 (609)
Q Consensus 557 ~~~~~~~~--~~~fs~~~~a~~~~~-~~~~l~~~ 587 (609)
.+|++++. .++|||+.+++++++ .|++++..
T Consensus 405 ~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 405 ERMGAAAREEVEKWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 66666552 468999999999998 79988864
No 17
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=9.2e-38 Score=348.66 Aligned_cols=428 Identities=15% Similarity=0.161 Sum_probs=271.0
Q ss_pred CceEEEEEeecC---Ccc----ccchHHHHhhchhHHH--------HhCCC----eEEEEeecCCCccccCCCceEEEEE
Q 007300 84 GLNILFVGTEVA---PWS----KTGGLGDVLGGLPPAL--------AANGH----RVMTIAPRYDQYKDAWDTDVVIELK 144 (609)
Q Consensus 84 ~MkIl~vs~~~~---P~~----~~GG~~~~~~~La~aL--------~~~Gh----~V~vit~~~~~~~~~~~~~~~~~~~ 144 (609)
.|||++||...+ |.. .+||...++.+|+++| +++|| +|.|+|...+.... .+..+.++..
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-~~~~~~~e~~ 333 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-TTCNQRLEKV 333 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-cccccccccc
Confidence 599999998762 211 3799999999999985 69999 77799976432111 0001111100
Q ss_pred eCCEEeeEEEEEeeEcCeeEEEEeCcc----hhhhhcCCCCCeeccCCCCCCCcchHH---HHHHHHHHHHHhhhhhccC
Q 007300 145 VGDKIEKVRFFHCHKRGVDRVFVDHPW----FLAKVWGKTQSKIYGPRTGEDYQDNQL---RFSLLCQAALEAPRILNLN 217 (609)
Q Consensus 145 ~~~~~~~~~~~~~~~~gv~~~~v~~~~----~~~~~~~~~~~~~y~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~~~ 217 (609)
...+|+.++++.... .+.+ |..... ....|...+.+.++..
T Consensus 334 ------------~~~~~~~I~rvp~g~~~~~~~~~-----------------~i~k~~l~p~l~~f~~~~~~~~~~~--- 381 (784)
T TIGR02470 334 ------------YGTEHAWILRVPFRTENGIILRN-----------------WISRFEIWPYLETFAEDAEKEILAE--- 381 (784)
T ss_pred ------------cCCCceEEEEecCCCCccccccc-----------------ccCHHHHHHHHHHHHHHHHHHHHHh---
Confidence 011345554443211 0000 222222 1223444444433321
Q ss_pred CCCCCCCCCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCC
Q 007300 218 SNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYN 297 (609)
Q Consensus 218 ~~~~~~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 297 (609)
+.++||+| |+|.|..++++..++.. .++|.++|.|.+....... ..........++.
T Consensus 382 ----~~~~pDlI-Hahy~d~glva~lla~~-------lgVP~v~t~HsL~~~K~~~-~g~~~~~~e~~~~---------- 438 (784)
T TIGR02470 382 ----LQGKPDLI-IGNYSDGNLVASLLARK-------LGVTQCTIAHALEKTKYPD-SDIYWQEFEDKYH---------- 438 (784)
T ss_pred ----cCCCCCEE-EECCCchHHHHHHHHHh-------cCCCEEEECCcchhhcccc-cccccccchhHHH----------
Confidence 12369999 99999999999888876 5999999999764321100 0000000000000
Q ss_pred CCcCCchhHHHHHHhhcCCEEEeeCHHHHH----HHh---cccCCCcc-ch----hh-hccCCeeEecCCCCCCCcCCCC
Q 007300 298 KPVRGRKINWMKAGILESDMVLTVSPHYAQ----ELV---SGEDKGVE-LD----NI-IRKTGIKGIVNGMDVQEWNPLT 364 (609)
Q Consensus 298 ~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~----~l~---~~~~~g~~-~~----~~-~~~~~i~vI~nGvd~~~~~p~~ 364 (609)
....+......+..||.||+.|..... .+. +...+.++ +. ++ ....++.+||+|+|...|.|.+
T Consensus 439 ---~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~ 515 (784)
T TIGR02470 439 ---FSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYS 515 (784)
T ss_pred ---hhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCC
Confidence 001122244678899999999975432 221 11111110 00 00 1234889999999999887754
Q ss_pred ccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCCh--
Q 007300 365 DKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-- 440 (609)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~-- 440 (609)
.+.-... ....-.+....++.+.++.+|+..++++|+|+++||++++||++.|++|+.++.. ++++|+|+|++..
T Consensus 516 ~~~~r~~-~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~ 594 (784)
T TIGR02470 516 DKEKRLT-NLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAK 594 (784)
T ss_pred chhhhhh-hhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccc
Confidence 3100000 0000000011134455678888777788999999999999999999999987643 5799999998642
Q ss_pred --------hhHHHHHHHHHhCC--CceEEEeec-ChHHHHHHH---H-hCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 441 --------PMEKQLEQLEILYP--EKARGVAKF-NIPLAHMII---A-GADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 441 --------~~~~~l~~l~~~~~--~~v~~~~~~-~~~~~~~~l---~-~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
...+.+.++..+++ ++|.+.+.. +......++ + ++|++++||++|+||++++|||+||+|||+|+
T Consensus 595 ~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~ 674 (784)
T TIGR02470 595 ESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATR 674 (784)
T ss_pred cccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcC
Confidence 13356666777665 567665533 333333333 3 46899999999999999999999999999999
Q ss_pred CCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh--hCHHHHHHHHHHHH---HhhCCchHHHHHHHHH
Q 007300 506 TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNGM---AQDLSWKGPAKKWEET 580 (609)
Q Consensus 506 ~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~--~~~~~~~~~~~~~~---~~~fs~~~~a~~~~~~ 580 (609)
+||+.|+|.++.+|+++ +|.|+++++++|.++++. .+++.+.+++++++ .++|||+.++++++++
T Consensus 675 ~GG~~EiV~dg~tGfLV----------dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l 744 (784)
T TIGR02470 675 FGGPLEIIQDGVSGFHI----------DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTL 744 (784)
T ss_pred CCCHHHHhcCCCcEEEe----------CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999987 999999999999998741 12667777777664 5899999999999987
Q ss_pred H
Q 007300 581 L 581 (609)
Q Consensus 581 ~ 581 (609)
.
T Consensus 745 ~ 745 (784)
T TIGR02470 745 A 745 (784)
T ss_pred H
Confidence 6
No 18
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=3.8e-37 Score=328.53 Aligned_cols=365 Identities=17% Similarity=0.253 Sum_probs=260.9
Q ss_pred ceEEEEEeecC--CccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCe
Q 007300 85 LNILFVGTEVA--PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (609)
Q Consensus 85 MkIl~vs~~~~--P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (609)
-||+|+.+.-. |....||+++++.++++.|+. +|+++|-..+.+++. +...+|+
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~~~~~---------------------~~~~~~~ 58 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPGYPEY---------------------TKVNDNC 58 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCCCCch---------------------hhccCCC
Confidence 38888876533 335689999999999999954 999999876544431 0122355
Q ss_pred eEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHH
Q 007300 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPC 242 (609)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~ 242 (609)
.++.+..+....+. ..+.+. - +...+.+..+..+...... ++||| |+|+... +..
T Consensus 59 ~~~~~~~~~~~~~~----~~~~~~--------~---~~~~~~~~~~~~~~~~~~~-------~~~vi-~v~~~~~-~~~- 113 (380)
T PRK15484 59 DIHYIGFSRIYKRL----FQKWTR--------L---DPLPYSQRILNIAHKFTIT-------KDSVI-VIHNSMK-LYR- 113 (380)
T ss_pred ceEEEEeccccchh----hhhhhc--------c---CchhHHHHHHHHHHhcCCC-------CCcEE-EEeCcHH-hHH-
Confidence 55555322211100 000000 0 1112333333333332212 47988 9987332 222
Q ss_pred HHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeC
Q 007300 243 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 322 (609)
Q Consensus 243 ~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 322 (609)
.++.. ++++|+++++|+... ...+..++.++++|
T Consensus 114 ~~~~~------~~~~~~v~~~h~~~~----------------------------------------~~~~~~~~~ii~~S 147 (380)
T PRK15484 114 QIRER------APQAKLVMHMHNAFE----------------------------------------PELLDKNAKIIVPS 147 (380)
T ss_pred HHHhh------CCCCCEEEEEecccC----------------------------------------hhHhccCCEEEEcC
Confidence 22222 268899999995311 11234679999999
Q ss_pred HHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcE
Q 007300 323 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 402 (609)
Q Consensus 323 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 402 (609)
+..++.+.+. .+ ..++.+||||+|...|.+.. +..+++.++++.+ .++
T Consensus 148 ~~~~~~~~~~----~~------~~~i~vIpngvd~~~~~~~~--------------------~~~~~~~~~~~~~--~~~ 195 (380)
T PRK15484 148 QFLKKFYEER----LP------NADISIVPNGFCLETYQSNP--------------------QPNLRQQLNISPD--ETV 195 (380)
T ss_pred HHHHHHHHhh----CC------CCCEEEecCCCCHHHcCCcc--------------------hHHHHHHhCCCCC--CeE
Confidence 9999988752 11 22789999999988776642 3456677787643 478
Q ss_pred EEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCC-------hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHH
Q 007300 403 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK-------KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 403 i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~-------~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~ 473 (609)
|+|+||+.+.||++.|++|++++.+ ++++|+|+|+|. ..+.+.++++..+++.++.+.+..+.+++..+|+
T Consensus 196 il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~ 275 (380)
T PRK15484 196 LLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYP 275 (380)
T ss_pred EEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH
Confidence 9999999999999999999999865 789999999875 2356677777777777787777777888889999
Q ss_pred hCcEEEecCCC-CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhC
Q 007300 474 GADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 552 (609)
Q Consensus 474 ~aDv~v~pS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~ 552 (609)
.||++++||.+ |+||++++|||+||+|||+|+.||+.|++.++.+|+++ +++.|+++++++|.+++++++
T Consensus 276 ~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~~~G~~l---------~~~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 276 LADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEGITGYHL---------AEPMTSDSIISDINRTLADPE 346 (380)
T ss_pred hCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhcccCCceEEE---------eCCCCHHHHHHHHHHHHcCHH
Confidence 99999999986 99999999999999999999999999999999999953 378999999999999999843
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 007300 553 TQALAEMMKNGMAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 553 ~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
...+.+.+++.+.++|||+.++++|+++|++..
T Consensus 347 ~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~~~~ 379 (380)
T PRK15484 347 LTQIAEQAKDFVFSKYSWEGVTQRFEEQIHNWF 379 (380)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 223333334445789999999999999998753
No 19
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.1e-36 Score=321.01 Aligned_cols=365 Identities=23% Similarity=0.229 Sum_probs=258.1
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||++++. |. .||.+.++.+|+++|+++||+|+|+|...+...... ..++.+
T Consensus 1 mki~~~~~---p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~-----------------------~~~~~~ 52 (371)
T cd04962 1 MKIGIVCY---PT--YGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY-----------------------SPNIFF 52 (371)
T ss_pred CceeEEEE---eC--CCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh-----------------------ccCeEE
Confidence 89999973 43 699999999999999999999999997532111100 011111
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
+.++.+.+... ....| .......+.+.++.. +||+| |+|.+.....+.++
T Consensus 53 ~~~~~~~~~~~-----~~~~~--------------~~~~~~~l~~~i~~~----------~~div-h~~~~~~~~~~~~~ 102 (371)
T cd04962 53 HEVEVPQYPLF-----QYPPY--------------DLALASKIAEVAKRY----------KLDLL-HVHYAVPHAVAAYL 102 (371)
T ss_pred EEecccccchh-----hcchh--------------HHHHHHHHHHHHhcC----------CccEE-eecccCCccHHHHH
Confidence 11111110000 00000 011223334444333 59999 99976554444444
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
...... ..++|+++++|+....- .+.. .....+.+..++.+|.++++|+.
T Consensus 103 ~~~~~~---~~~~~~i~~~h~~~~~~---------~~~~------------------~~~~~~~~~~~~~~d~ii~~s~~ 152 (371)
T cd04962 103 AREILG---KKDLPVVTTLHGTDITL---------VGQD------------------PSFQPATRFSIEKSDGVTAVSES 152 (371)
T ss_pred HHHhcC---cCCCcEEEEEcCCcccc---------cccc------------------ccchHHHHHHHhhCCEEEEcCHH
Confidence 332110 03789999999643210 0000 01123456778899999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
..+.+.+. ++ .. .++.+|+||+|...+.+.. +...+.+++++. +.++++
T Consensus 153 ~~~~~~~~--~~-~~------~~i~vi~n~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~il 201 (371)
T cd04962 153 LRQETYEL--FD-IT------KEIEVIPNFVDEDRFRPKP--------------------DEALKRRLGAPE--GEKVLI 201 (371)
T ss_pred HHHHHHHh--cC-Cc------CCEEEecCCcCHhhcCCCc--------------------hHHHHHhcCCCC--CCeEEE
Confidence 99988752 11 12 2799999999987776543 233456677654 448899
Q ss_pred EEeccccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCcEEEec
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIP 481 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDv~v~p 481 (609)
++||+.+.||++.+++++.++.+ .+++|+++|+|+ ..+.++++..+.+ +++.+.+. . +.+..+|+.||++++|
T Consensus 202 ~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g~-~-~~~~~~~~~~d~~v~p 277 (371)
T cd04962 202 HISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGDGP--ERSPAERLARELGLQDDVLFLGK-Q-DHVEELLSIADLFLLP 277 (371)
T ss_pred EecccccccCHHHHHHHHHHHHhcCCceEEEEcCCc--CHHHHHHHHHHcCCCceEEEecC-c-ccHHHHHHhcCEEEeC
Confidence 99999999999999999999866 579999999987 3455666655543 45666553 3 4567899999999999
Q ss_pred CCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007300 482 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK 561 (609)
Q Consensus 482 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~ 561 (609)
|.+|+||++++|||++|+|||+|+.||..|++.++.+|+++ +++|+++++++|.+++++ ++.+.+|++
T Consensus 278 s~~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~~~G~~~----------~~~~~~~l~~~i~~l~~~--~~~~~~~~~ 345 (371)
T cd04962 278 SEKESFGLAALEAMACGVPVVASNAGGIPEVVKHGETGFLV----------DVGDVEAMAEYALSLLED--DELWQEFSR 345 (371)
T ss_pred CCcCCCccHHHHHHHcCCCEEEeCCCCchhhhcCCCceEEc----------CCCCHHHHHHHHHHHHhC--HHHHHHHHH
Confidence 99999999999999999999999999999999999999987 999999999999999987 566666665
Q ss_pred HH---HHhhCCchHHHHHHHHHHHHH
Q 007300 562 NG---MAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 562 ~~---~~~~fs~~~~a~~~~~~~~~l 584 (609)
++ +.+.|||+.++++|.++|+++
T Consensus 346 ~~~~~~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 346 AARNRAAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 55 468899999999999999864
No 20
>PLN00142 sucrose synthase
Probab=100.00 E-value=1.7e-36 Score=338.50 Aligned_cols=322 Identities=17% Similarity=0.183 Sum_probs=221.3
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCch
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 304 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (609)
+||+| |+|+|..++++..++.. .++|.|+|.|.+.-... .......-.....+. ....
T Consensus 408 ~PDlI-HaHYwdsg~vA~~La~~-------lgVP~v~T~HsL~k~K~-~~~~~~~~~~e~~y~-------------~~~r 465 (815)
T PLN00142 408 KPDLI-IGNYSDGNLVASLLAHK-------LGVTQCTIAHALEKTKY-PDSDIYWKKFDDKYH-------------FSCQ 465 (815)
T ss_pred CCCEE-EECCccHHHHHHHHHHH-------hCCCEEEEcccchhhhc-cccCCcccccchhhh-------------hhhc
Confidence 69999 99999999999999987 59999999997653111 100000000011110 0012
Q ss_pred hHHHHHHhhcCCEEEeeCHHHHHH-------HhcccCCCcc-chhh-----hccCCeeEecCCCCCCCcCCCCccc--cc
Q 007300 305 INWMKAGILESDMVLTVSPHYAQE-------LVSGEDKGVE-LDNI-----IRKTGIKGIVNGMDVQEWNPLTDKY--IG 369 (609)
Q Consensus 305 ~~~~k~~~~~ad~vi~vS~~~~~~-------l~~~~~~g~~-~~~~-----~~~~~i~vI~nGvd~~~~~p~~~~~--~~ 369 (609)
+......+..||.|++.|...... +.++..++++ +..+ ....++.+|++|+|...|.|...+. +.
T Consensus 466 ~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~ 545 (815)
T PLN00142 466 FTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLT 545 (815)
T ss_pred hHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHH
Confidence 344566888999999999877642 2222122211 0000 0123889999999999888754210 00
Q ss_pred cccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCC-h------
Q 007300 370 VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK-K------ 440 (609)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~-~------ 440 (609)
.-++ ..+....+....++.+|+..++++++|+++||+.++||++.|++|+.++.+ ++++|+|+|+|. +
T Consensus 546 ~l~n---~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ 622 (815)
T PLN00142 546 SLHP---SIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDR 622 (815)
T ss_pred hhcc---cchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccH
Confidence 0000 001111223344567887666778999999999999999999999998754 579999999872 1
Q ss_pred hh---HHHHHHHHHhCC--CceEEEeecC----hHHHHHHHH-hCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcc
Q 007300 441 PM---EKQLEQLEILYP--EKARGVAKFN----IPLAHMIIA-GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 510 (609)
Q Consensus 441 ~~---~~~l~~l~~~~~--~~v~~~~~~~----~~~~~~~l~-~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~ 510 (609)
+. .+.+.++..+++ +++.+.+... .+.+..+++ .+|++++||.+|+||++++|||+||+|||+|+.||+.
T Consensus 623 ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~ 702 (815)
T PLN00142 623 EEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPA 702 (815)
T ss_pred HHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHH
Confidence 11 134566666654 4566544322 233444555 5799999999999999999999999999999999999
Q ss_pred cccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh--hCHHHHHHHHHHH---HHhhCCchHHHHHHHHHH
Q 007300 511 DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT--YGTQALAEMMKNG---MAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 511 e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~--~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~ 581 (609)
|+|.++.+|+++ +|.|+++++++|.++++. .+++.+.+|++++ +.++|||+.++++++++.
T Consensus 703 EIV~dG~tG~LV----------~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~ 768 (815)
T PLN00142 703 EIIVDGVSGFHI----------DPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLG 768 (815)
T ss_pred HHhcCCCcEEEe----------CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999987 999999999999887631 1266777777766 457899999999998865
No 21
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=3.2e-36 Score=323.71 Aligned_cols=275 Identities=20% Similarity=0.220 Sum_probs=218.1
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCch
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 304 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (609)
+||+| |+|.++.+.....++.... ...|+++++|+...... .. ....
T Consensus 118 ~~dii-haH~~~~~~~~~~~~~~~~-----~~~~~~~t~Hg~d~~~~-------------~~--------------~~~~ 164 (406)
T PRK15427 118 VADVF-IAHFGPAGVTAAKLRELGV-----LRGKIATIFHGIDISSR-------------EV--------------LNHY 164 (406)
T ss_pred CCCEE-EEcCChHHHHHHHHHHhCC-----CCCCeEEEEcccccccc-------------hh--------------hhhh
Confidence 59999 9998877666666554211 24567889996322000 00 0011
Q ss_pred hHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHH
Q 007300 305 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 384 (609)
Q Consensus 305 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
...++..++.+|.++++|+..++.+.+ +|++.+ ++.+||||+|.+.|.+....
T Consensus 165 ~~~~~~~~~~ad~vv~~S~~~~~~l~~---~g~~~~------ki~vi~nGvd~~~f~~~~~~------------------ 217 (406)
T PRK15427 165 TPEYQQLFRRGDLMLPISDLWAGRLQK---MGCPPE------KIAVSRMGVDMTRFSPRPVK------------------ 217 (406)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHH---cCCCHH------HEEEcCCCCCHHHcCCCccc------------------
Confidence 124566788999999999999999986 566555 89999999999888654210
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEE
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGV 460 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~ 460 (609)
...+.+.|+|+||+.++||++.+++|++.+.+ ++++|+|+|+|+ .++.++++..+++ +++.+.
T Consensus 218 -----------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~--~~~~l~~~~~~~~l~~~V~~~ 284 (406)
T PRK15427 218 -----------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGP--WERRLRTLIEQYQLEDVVEMP 284 (406)
T ss_pred -----------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECch--hHHHHHHHHHHcCCCCeEEEe
Confidence 01234679999999999999999999999975 589999999998 6677777777654 567777
Q ss_pred eecChHHHHHHHHhCcEEEecCCC------CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCC
Q 007300 461 AKFNIPLAHMIIAGADFILIPSRF------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 534 (609)
Q Consensus 461 ~~~~~~~~~~~l~~aDv~v~pS~~------E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~ 534 (609)
+..+.+++..+|+.||++++||.. |++|++++|||++|+|||+|+.||+.|++.++.+|+++ ++
T Consensus 285 G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~~~G~lv----------~~ 354 (406)
T PRK15427 285 GFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLV----------PE 354 (406)
T ss_pred CCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCCCceEEe----------CC
Confidence 777888888999999999999974 99999999999999999999999999999999999987 99
Q ss_pred CCHHHHHHHHHHHHH-hhCHHHHHHHHHH---HHHhhCCchHHHHHHHHHHHHH
Q 007300 535 VDVAAVSTTVRRALA-TYGTQALAEMMKN---GMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 535 ~d~~~la~~I~~ll~-~~~~~~~~~~~~~---~~~~~fs~~~~a~~~~~~~~~l 584 (609)
+|+++++++|.++++ + ++.+.+|+++ .+.++|+|+.+++++.++|+++
T Consensus 355 ~d~~~la~ai~~l~~~d--~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 355 NDAQALAQRLAAFSQLD--TDELAPVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred CCHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 999999999999999 7 5555555554 4689999999999999999863
No 22
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.7e-35 Score=311.77 Aligned_cols=358 Identities=18% Similarity=0.184 Sum_probs=246.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCC-CccccCCCceEEEEEeCCEEeeEEEEEeeEcCee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD-QYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (609)
-||++|...+ ..||++.++.+|+++|.+.||++.+++.... .+.. +....|+.
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~i~ 55 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRK----------------------RIQRPDVA 55 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEEcCCCChhHH----------------------HHHhcCce
Confidence 4899998874 2599999999999999999999999985321 1111 00122444
Q ss_pred EEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHH
Q 007300 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCY 243 (609)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~ 243 (609)
++.+..... .. + .+...+.+.++.. +|||| |+|...+. ...+
T Consensus 56 ~~~~~~~~~----------------------~~---~-~~~~~l~~~l~~~----------~~Div-h~~~~~~~-~~~~ 97 (374)
T TIGR03088 56 FYALHKQPG----------------------KD---V-AVYPQLYRLLRQL----------RPDIV-HTRNLAAL-EAQL 97 (374)
T ss_pred EEEeCCCCC----------------------CC---h-HHHHHHHHHHHHh----------CCCEE-EEcchhHH-HHHH
Confidence 444321100 00 0 1222333444444 59999 99864332 2222
Q ss_pred HHHhhcCCCcccCceE-EEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHH-HhhcCCEEEee
Q 007300 244 LKTMYKPKGMYKSAKV-VFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA-GILESDMVLTV 321 (609)
Q Consensus 244 l~~~~~~~~~~~~~~~-v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-~~~~ad~vi~v 321 (609)
.... .+.|+ +++.|....... . + ......+++. ....+|.++++
T Consensus 98 ~~~~-------~~~~~~i~~~h~~~~~~~-----------~-----------~-----~~~~~~~~~~~~~~~~~~~i~v 143 (374)
T TIGR03088 98 PAAL-------AGVPARIHGEHGRDVFDL-----------D-----------G-----SNWKYRWLRRLYRPLIHHYVAV 143 (374)
T ss_pred HHHh-------cCCCeEEEeecCcccccc-----------h-----------h-----hHHHHHHHHHHHHhcCCeEEEe
Confidence 2222 24443 444442211000 0 0 0011233333 44579999999
Q ss_pred CHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCc
Q 007300 322 SPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIP 401 (609)
Q Consensus 322 S~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 401 (609)
|+..++.+.+. ++++.+ ++.+|+||+|.+.|.+.... +...+.....+ .+.+
T Consensus 144 s~~~~~~~~~~--~~~~~~------~~~vi~ngvd~~~~~~~~~~------------------~~~~~~~~~~~--~~~~ 195 (374)
T TIGR03088 144 SRDLEDWLRGP--VKVPPA------KIHQIYNGVDTERFHPSRGD------------------RSPILPPDFFA--DESV 195 (374)
T ss_pred CHHHHHHHHHh--cCCChh------hEEEeccCccccccCCCccc------------------hhhhhHhhcCC--CCCe
Confidence 99999988752 454444 89999999999888765311 11222222222 3558
Q ss_pred EEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHHHHHH
Q 007300 402 VIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 402 ~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~ 473 (609)
+|+++||+.++||++.+++|+.++.+ ++++|+++|+|+ ..+.++++..+++ ..+.+.+ + .+++..+|+
T Consensus 196 ~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g-~-~~~~~~~~~ 271 (374)
T TIGR03088 196 VVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGP--ARGACEQMVRAAGLAHLVWLPG-E-RDDVPALMQ 271 (374)
T ss_pred EEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCc--hHHHHHHHHHHcCCcceEEEcC-C-cCCHHHHHH
Confidence 99999999999999999999998854 279999999987 4566666666554 2343333 2 445678999
Q ss_pred hCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCH
Q 007300 474 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 553 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~ 553 (609)
.||++++||.+|+||++++|||+||+|||+|+.||..|++.++.+|+++ +++|+++++++|.+++++ +
T Consensus 272 ~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~~~g~~~----------~~~d~~~la~~i~~l~~~--~ 339 (374)
T TIGR03088 272 ALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPELVQHGVTGALV----------PPGDAVALARALQPYVSD--P 339 (374)
T ss_pred hcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHHHhcCCCceEEe----------CCCCHHHHHHHHHHHHhC--H
Confidence 9999999999999999999999999999999999999999999999987 999999999999999987 5
Q ss_pred HHHHHHHHH---HHHhhCCchHHHHHHHHHHHHH
Q 007300 554 QALAEMMKN---GMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 554 ~~~~~~~~~---~~~~~fs~~~~a~~~~~~~~~l 584 (609)
+.+.+++++ .+.++|||+.++++|+++|+++
T Consensus 340 ~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 340 AARRAHGAAGRARAEQQFSINAMVAAYAGLYDQL 373 (374)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 555555544 4578999999999999999876
No 23
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=8.7e-35 Score=312.40 Aligned_cols=378 Identities=18% Similarity=0.172 Sum_probs=247.0
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
|||||...|++. ...|+++|+++||+|+++|+....... .||+++
T Consensus 1 ~il~~~~~~p~~---------~~~la~~L~~~G~~v~~~~~~~~~~~~--------------------------~~v~~~ 45 (396)
T cd03818 1 RILFVHQNFPGQ---------FRHLAPALAAQGHEVVFLTEPNAAPPP--------------------------GGVRVV 45 (396)
T ss_pred CEEEECCCCchh---------HHHHHHHHHHCCCEEEEEecCCCCCCC--------------------------CCeeEE
Confidence 699999986442 456999999999999999987332111 045555
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+..+..-. . .+.+|.........-..++.+.+..+..+ ..+|||| |+|.... ...+++
T Consensus 46 ~~~~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~pdvi-~~h~~~~--~~~~l~ 104 (396)
T cd03818 46 RYRPPRGPT-------S------GTHPYLREFEEAVLRGQAVARALLALRAK-----GFRPDVI-VAHPGWG--ETLFLK 104 (396)
T ss_pred EecCCCCCC-------C------CCCccchhHHHHHHHHHHHHHHHHHHHhc-----CCCCCEE-EECCccc--hhhhHH
Confidence 553221100 0 11123333333222223333333332110 1259999 9985222 233455
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
.. ++++|+|..+|-... .. . ...+....+....... .. ...........+..+|.++++|+..
T Consensus 105 ~~------~~~~~~v~~~~~~~~-~~-~----~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~ad~vi~~s~~~ 167 (396)
T cd03818 105 DV------WPDAPLIGYFEFYYR-AE-G----ADVGFDPEFPPSLDDA----LR-LRNRNALILLALAQADAGVSPTRWQ 167 (396)
T ss_pred Hh------CCCCCEEEEEeeeec-CC-C----CCCCCCCCCCCchhHH----HH-HHHhhhHhHHHHHhCCEEECCCHHH
Confidence 44 268898887763211 00 0 0001110000000000 00 0000111345688999999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
++.+.+. + ..++.+||||+|.+.|.|.... ....+...+++ .+.++|+|
T Consensus 168 ~~~~~~~--~---------~~ki~vI~ngvd~~~f~~~~~~------------------~~~~~~~~~~~--~~~~~i~~ 216 (396)
T cd03818 168 RSTFPAE--L---------RSRISVIHDGIDTDRLRPDPQA------------------RLRLPNGRVLT--PGDEVITF 216 (396)
T ss_pred HhhCcHh--h---------ccceEEeCCCccccccCCCchh------------------hhcccccccCC--CCCeEEEE
Confidence 9987641 1 1289999999999988775321 11111122222 34579999
Q ss_pred Eec-cccccCHHHHHHHHhhccc--CCeEEEEEeCCCh-----------hhHHHHHHHHHhC-CCceEEEeecChHHHHH
Q 007300 406 IGR-LEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-----------PMEKQLEQLEILY-PEKARGVAKFNIPLAHM 470 (609)
Q Consensus 406 iGr-l~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~-----------~~~~~l~~l~~~~-~~~v~~~~~~~~~~~~~ 470 (609)
+|| +++.||++.+++|++.+.+ ++++|+|+|++.. ..++.++++..+. .+++.+.+..+.+++..
T Consensus 217 vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~ 296 (396)
T cd03818 217 VARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLA 296 (396)
T ss_pred ECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHH
Confidence 998 9999999999999999865 7999999997421 1233345544322 24688877778888889
Q ss_pred HHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 471 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
+|+.||++++||..|++|++++|||+||+|||+|+.||+.|++.++.+|+++ ++.|+++++++|.+++++
T Consensus 297 ~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv----------~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 297 LLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAPVREVITDGENGLLV----------DFFDPDALAAAVIELLDD 366 (396)
T ss_pred HHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCCchhhcccCCceEEc----------CCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999987 999999999999999998
Q ss_pred hCHHHHHHHHHHH---HHhhCCchHHHHHHHH
Q 007300 551 YGTQALAEMMKNG---MAQDLSWKGPAKKWEE 579 (609)
Q Consensus 551 ~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~ 579 (609)
++.+.+|++++ +.++|||+.++++|++
T Consensus 367 --~~~~~~l~~~ar~~~~~~fs~~~~~~~~~~ 396 (396)
T cd03818 367 --PARRARLRRAARRTALRYDLLSVCLPRQLA 396 (396)
T ss_pred --HHHHHHHHHHHHHHHHHhccHHHHHHHHhC
Confidence 55555555544 5678999999999863
No 24
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=8.6e-35 Score=311.25 Aligned_cols=380 Identities=24% Similarity=0.273 Sum_probs=263.2
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
+++++.+...+|. .||++.++.+|+++|+++||+|+|++...+...... ....+|+.+
T Consensus 7 ~~~~~~~~~~~~~--~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~--------------------~~~~~~~~~ 64 (398)
T cd03800 7 LHGSPLAQPGGAD--TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPI--------------------VELAPGVRV 64 (398)
T ss_pred ccccccccCCCCC--CCceeehHHHHHHHHhccCceEEEEEecCCcccCCc--------------------cccccceEE
Confidence 3444444333343 799999999999999999999999997643211100 112234555
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
+.+....... +. .......+..+...+...++... .+||+| |+|.+..+.+...+
T Consensus 65 ~~~~~~~~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~~--------~~~Div-~~~~~~~~~~~~~~ 119 (398)
T cd03800 65 VRVPAGPAEY----------LP------KEELWPYLDEFADDLLRFLRREG--------GRPDLI-HAHYWDSGLVALLL 119 (398)
T ss_pred EecccccccC----------CC------hhhcchhHHHHHHHHHHHHHhcC--------CCccEE-EEecCccchHHHHH
Confidence 5443211100 00 00000111223344444444331 149999 99988877776666
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
+.. .++|+|++.|+........ ...... .........++..++.+|.++++|+.
T Consensus 120 ~~~-------~~~~~i~~~h~~~~~~~~~--------~~~~~~-----------~~~~~~~~~~~~~~~~ad~ii~~s~~ 173 (398)
T cd03800 120 ARR-------LGIPLVHTFHSLGAVKRRH--------LGAADT-----------YEPARRIEAEERLLRAADRVIASTPQ 173 (398)
T ss_pred Hhh-------cCCceEEEeecccccCCcc--------cccccc-----------cchhhhhhHHHHHHhhCCEEEEcCHH
Confidence 654 5899999999754311100 000000 00011234456778899999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
..+.+.+. ++... .++.+|+||+|.+.|.+... ....+...+.+. +.++|+
T Consensus 174 ~~~~~~~~--~~~~~------~~~~vi~ng~~~~~~~~~~~-------------------~~~~~~~~~~~~--~~~~i~ 224 (398)
T cd03800 174 EAEELYSL--YGAYP------RRIRVVPPGVDLERFTPYGR-------------------AEARRARLLRDP--DKPRIL 224 (398)
T ss_pred HHHHHHHH--ccccc------cccEEECCCCCccceecccc-------------------hhhHHHhhccCC--CCcEEE
Confidence 99888752 22221 26899999999988866532 111133444443 458999
Q ss_pred EEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChh----hHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCc
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKP----MEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~----~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aD 476 (609)
|+||+.+.||++.+++|+..+.+ ++++|+++|++... ....++.+....+ +++.+.+..+.+++..+++.||
T Consensus 225 ~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad 304 (398)
T cd03800 225 AVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAAD 304 (398)
T ss_pred EEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCC
Confidence 99999999999999999999975 58999999987632 2334555555543 4677777778888889999999
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHH
Q 007300 477 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 556 (609)
Q Consensus 477 v~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~ 556 (609)
++++||..|++|++++|||++|+|||+++.+|..|++.++.+|+++ ++.|+++++++|.+++++ ++.+
T Consensus 305 i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~~~g~~~----------~~~~~~~l~~~i~~l~~~--~~~~ 372 (398)
T cd03800 305 VFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVVDGVTGLLV----------DPRDPEALAAALRRLLTD--PALR 372 (398)
T ss_pred EEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHccCCCCeEEe----------CCCCHHHHHHHHHHHHhC--HHHH
Confidence 9999999999999999999999999999999999999999999987 899999999999999987 6666
Q ss_pred HHHHHHH---HHhhCCchHHHHHHH
Q 007300 557 AEMMKNG---MAQDLSWKGPAKKWE 578 (609)
Q Consensus 557 ~~~~~~~---~~~~fs~~~~a~~~~ 578 (609)
.++++++ +.++|||+.++++|+
T Consensus 373 ~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 373 RRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 6666655 458999999999986
No 25
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=2e-34 Score=301.06 Aligned_cols=329 Identities=19% Similarity=0.204 Sum_probs=237.3
Q ss_pred ceEEEEEeecCC--ccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCe
Q 007300 85 LNILFVGTEVAP--WSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGV 162 (609)
Q Consensus 85 MkIl~vs~~~~P--~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv 162 (609)
|||++|++.+.| ....||.++++.+|+.+|.++||+|+++++..+..... ...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~-------------------~~~------ 55 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP-------------------LVP------ 55 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc-------------------eee------
Confidence 899999998744 34589999999999999999999999999864321110 000
Q ss_pred eEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHH
Q 007300 163 DRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPC 242 (609)
Q Consensus 163 ~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~ 242 (609)
. ........ +.............+.+.++.. +|||| |+|.+.....
T Consensus 56 -~--~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~----------~~Div-h~~~~~~~~~-- 101 (335)
T cd03802 56 -V--VPEPLRLD------------------APGRDRAEAEALALAERALAAG----------DFDIV-HNHSLHLPLP-- 101 (335)
T ss_pred -c--cCCCcccc------------------cchhhHhhHHHHHHHHHHHhcC----------CCCEE-EecCcccchh--
Confidence 0 00000000 0000001111222222333222 59999 9998777655
Q ss_pred HHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeC
Q 007300 243 YLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 322 (609)
Q Consensus 243 ~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 322 (609)
+... .+.|+++++|+..... ...........+.++++|
T Consensus 102 -~~~~-------~~~~~v~~~h~~~~~~----------------------------------~~~~~~~~~~~~~~~~~s 139 (335)
T cd03802 102 -FARP-------LPVPVVTTLHGPPDPE----------------------------------LLKLYYAARPDVPFVSIS 139 (335)
T ss_pred -hhcc-------cCCCEEEEecCCCCcc----------------------------------cchHHHhhCcCCeEEEec
Confidence 2211 5889999999654310 001233456788999999
Q ss_pred HHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcE
Q 007300 323 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 402 (609)
Q Consensus 323 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 402 (609)
+...+.+.. . .++.+||||+|.+.|.+.. .+...
T Consensus 140 ~~~~~~~~~---~----------~~~~vi~ngvd~~~~~~~~---------------------------------~~~~~ 173 (335)
T cd03802 140 DAQRRPWPP---L----------PWVATVHNGIDLDDYPFRG---------------------------------PKGDY 173 (335)
T ss_pred HHHHhhccc---c----------cccEEecCCcChhhCCCCC---------------------------------CCCCE
Confidence 999887664 1 2899999999998886532 13468
Q ss_pred EEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHh---CCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 403 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEIL---YPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 403 i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~---~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
++|+||+.+.||++.+++++++. +++|+|+|+|.. ...+...... ..+++.+.+..+.+.+..+++.+|+++
T Consensus 174 i~~~Gr~~~~Kg~~~li~~~~~~---~~~l~i~G~~~~--~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v 248 (335)
T cd03802 174 LLFLGRISPEKGPHLAIRAARRA---GIPLKLAGPVSD--PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALL 248 (335)
T ss_pred EEEEEeeccccCHHHHHHHHHhc---CCeEEEEeCCCC--HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEE
Confidence 99999999999999999998765 799999999862 2222222222 246788888878888888999999999
Q ss_pred ecCCC-CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHH
Q 007300 480 IPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAE 558 (609)
Q Consensus 480 ~pS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~ 558 (609)
+||.+ |+||++++|||+||+|||+++.||..|++.++.+|+++ ++ +++++++|.++++. . .+
T Consensus 249 ~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~~g~l~----------~~--~~~l~~~l~~l~~~--~---~~ 311 (335)
T cd03802 249 FPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGVTGFLV----------DS--VEELAAAVARADRL--D---RA 311 (335)
T ss_pred eCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCCcEEEe----------CC--HHHHHHHHHHHhcc--H---HH
Confidence 99985 99999999999999999999999999999999999986 44 99999999998664 2 12
Q ss_pred HHHHHHHhhCCchHHHHHHHHHHH
Q 007300 559 MMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 559 ~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
.+++.+.++|||+.++++|+++|+
T Consensus 312 ~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 312 ACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhC
Confidence 344556799999999999999984
No 26
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=2.2e-34 Score=322.54 Aligned_cols=471 Identities=20% Similarity=0.259 Sum_probs=352.7
Q ss_pred eEEEEEeecC-----CccccchHHHHhhchhHHHHhCCCeEEEEeecCCC-cc------cc--------CC-------C-
Q 007300 86 NILFVGTEVA-----PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ-YK------DA--------WD-------T- 137 (609)
Q Consensus 86 kIl~vs~~~~-----P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~-~~------~~--------~~-------~- 137 (609)
-++++|.||. | ...||+|...+...++++..|....-++..|.+ |. +. |+ .
T Consensus 87 ~~aYFs~E~gl~~~lp-iYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~ 165 (778)
T cd04299 87 VAAYFSMEFGLHESLP-IYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV 165 (778)
T ss_pred eeEEeccccccCCCCC-ccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE
Confidence 4558998875 5 467999999999999999999999999987752 11 11 21 1
Q ss_pred ------ceEEEEEeCCEEeeEEEEEeeEcCeeEEEEeCcchhhhhcCCCCC-eeccCCCCCCCcchHHH---HHHHHHHH
Q 007300 138 ------DVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQS-KIYGPRTGEDYQDNQLR---FSLLCQAA 207 (609)
Q Consensus 138 ------~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~r---~~~~~~~~ 207 (609)
...+.+.+.++...++.++....+|+++++|++.+....+.+..+ .+|++ |+..| +.+|+.+.
T Consensus 166 ~~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~-------D~~~Rl~Qe~~Lg~ag 238 (778)
T cd04299 166 RDADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG-------DQETRIQQEILLGIGG 238 (778)
T ss_pred ecCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC-------cHHHHHHHHHHHHHHH
Confidence 235667777888889999988889999999987743333333322 46763 45666 58999999
Q ss_pred HHhhhhhccCCCCCCCCCCceEEEecccccchHHH-----HHHHh-hcCCC--cccCceEEEEEecCccCC--ccccccc
Q 007300 208 LEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPC-----YLKTM-YKPKG--MYKSAKVVFCIHNIAYQG--RFAFEDF 277 (609)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~-----~l~~~-~~~~~--~~~~~~~v~~iH~~~~~~--~~~~~~~ 277 (609)
+++++.+++. |||| |+||||+++++. +++.. +.... -....+++||+|++.++| .|+.+.+
T Consensus 239 l~~Lr~lg~~--------pdVi-H~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~ 309 (778)
T cd04299 239 VRALRALGIK--------PTVY-HMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLV 309 (778)
T ss_pred HHHHHHhCCC--------CeEE-EeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHH
Confidence 9999887654 9999 999999999998 44321 00000 013578999999999999 8887766
Q ss_pred cc--------cCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH---HHHHhcccCCCccchhhhccC
Q 007300 278 GL--------LNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY---AQELVSGEDKGVELDNIIRKT 346 (609)
Q Consensus 278 ~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~---~~~l~~~~~~g~~~~~~~~~~ 346 (609)
.. ++++...+..+.....-. ....+++++.++..|+.+.+||+-+ .+++......|.+.+ ..
T Consensus 310 ~~~~~~~~~~lgl~~~~~~~lg~e~~~~---~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~----~~ 382 (778)
T cd04299 310 ERYFGPYARELGLSRDRFLALGRENPGD---DPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVE----EV 382 (778)
T ss_pred HHHhhHHHHHcCCCHHHHhhhccccccC---ccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcc----cC
Confidence 32 555544322221111000 0135799999999999999999988 555443223344332 33
Q ss_pred CeeEecCCCCCCCcC-CCCcccccccc---------------------CcchhcccchHHHHHHHHHh------------
Q 007300 347 GIKGIVNGMDVQEWN-PLTDKYIGVKY---------------------DASTVMDAKPLLKEALQAEV------------ 392 (609)
Q Consensus 347 ~i~vI~nGvd~~~~~-p~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~------------ 392 (609)
++..|.||||...|. |..++.+ .+| ....+...+..+|.+|++.+
T Consensus 383 ~i~~ITNGVh~~~W~~P~~~~l~-~~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g 461 (778)
T cd04299 383 PIGHVTNGVHVPTWVAPEMRELY-DRYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRG 461 (778)
T ss_pred ceeceeCCcchhhhcCHHHHHHH-HHhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 799999999999998 7655544 222 12334567777887776653
Q ss_pred ---------CCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCC------hhhHHHHHHHHH
Q 007300 393 ---------GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK------KPMEKQLEQLEI 451 (609)
Q Consensus 393 ---------gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~------~~~~~~l~~l~~ 451 (609)
+.+.+++.++|+|++|+..+|+.+++++.+.++.+ .+++|||+|++. +.+.+.+.++..
T Consensus 462 ~~~~~~~~~~~~ldpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~ 541 (778)
T cd04299 462 ASAEEIGEADDVLDPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSR 541 (778)
T ss_pred CchhhhhhcCCccCCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHh
Confidence 56677888999999999999999999999888743 479999999987 467778888888
Q ss_pred --hCCCceEEEeecChHHHHHHHHhCcEEEecCC--CCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccc-
Q 007300 452 --LYPEKARGVAKFNIPLAHMIIAGADFILIPSR--FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFS- 526 (609)
Q Consensus 452 --~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~--~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~- 526 (609)
.+++++.+...|+..+++.++++||+.+.||+ +|+||++.+-||..|.+-+++.-|...|.. ++.|||.+|.-.
T Consensus 542 ~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~ 620 (778)
T cd04299 542 RPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDE 620 (778)
T ss_pred CcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCcc
Confidence 66779999999999999999999999999999 899999999999999999999999999887 789999997421
Q ss_pred -cccccCCCCCHHHHHHHHHHHHH-hh-C------HHHHHHHHHHHHHh---hCCchHHHHHHHHHHH
Q 007300 527 -VDCEAVDPVDVAAVSTTVRRALA-TY-G------TQALAEMMKNGMAQ---DLSWKGPAKKWEETLL 582 (609)
Q Consensus 527 -~~~~~v~~~d~~~la~~I~~ll~-~~-~------~~~~~~~~~~~~~~---~fs~~~~a~~~~~~~~ 582 (609)
.|.+.-+..|+++|.++|++.+. .+ + +..+.+|.+++|.+ .|||.+++++|.+-|.
T Consensus 621 ~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 621 YEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred ccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 13333456788889999976443 22 1 46799999999987 9999999999977554
No 27
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=5.5e-35 Score=312.38 Aligned_cols=381 Identities=14% Similarity=0.064 Sum_probs=238.7
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCC-CeEEEEeecCCCcccc--CCCceEEEEEeCCEEeeEEEEEeeE
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPRYDQYKDA--WDTDVVIELKVGDKIEKVRFFHCHK 159 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vit~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (609)
++|||++++..|.|| .+|+...+..++..|+++| |+|+||.|.++...+. ++....+...... ...++-+
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~-e~~~~~~---- 75 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQ-EAYVRQW---- 75 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhh-hhhhhhh----
Confidence 469999999999999 9999999999999999999 8999999987532110 1100000000000 0000000
Q ss_pred cCeeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchH---HHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecc-c
Q 007300 160 RGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQ---LRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVAND-W 235 (609)
Q Consensus 160 ~gv~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~-~ 235 (609)
.+-.++++....+. . |++.+ .+.......+.+.++.+ +|||| |+|+ +
T Consensus 76 ~~~~v~r~~s~~~p----------~--------yp~r~~~~~r~~~~~~~i~~~l~~~----------~pDVI-Hv~tP~ 126 (462)
T PLN02846 76 LEERISFLPKFSIK----------F--------YPGKFSTDKRSILPVGDISETIPDE----------EADIA-VLEEPE 126 (462)
T ss_pred ccCeEEEecccccc----------c--------CcccccccccccCChHHHHHHHHhc----------CCCEE-EEcCch
Confidence 01111222111110 0 11100 01111223344445444 59999 8886 3
Q ss_pred ccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcC
Q 007300 236 HTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILES 315 (609)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a 315 (609)
+.++.....+... .-.++|.+.|.-.. ..... ...+. ....+.....+|+++. .+
T Consensus 127 ~LG~~~~g~~~~~------k~~~vV~tyHT~y~-~Y~~~---~~~g~-------------~~~~l~~~~~~~~~r~--~~ 181 (462)
T PLN02846 127 HLTWYHHGKRWKT------KFRLVIGIVHTNYL-EYVKR---EKNGR-------------VKAFLLKYINSWVVDI--YC 181 (462)
T ss_pred hhhhHHHHHHHHh------cCCcEEEEECCChH-HHHHH---hccch-------------HHHHHHHHHHHHHHHH--hc
Confidence 3344311112111 12348889996211 00000 00000 0000011112233222 48
Q ss_pred CEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCC
Q 007300 316 DMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLP 395 (609)
Q Consensus 316 d~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 395 (609)
|.++++|....+ +.+ .+...++|||.+.|.|... ..++..+ +
T Consensus 182 d~vi~pS~~~~~-l~~---------------~~i~~v~GVd~~~f~~~~~---------------------~~~~~~~-~ 223 (462)
T PLN02846 182 HKVIRLSAATQD-YPR---------------SIICNVHGVNPKFLEIGKL---------------------KLEQQKN-G 223 (462)
T ss_pred CEEEccCHHHHH-Hhh---------------CEEecCceechhhcCCCcc---------------------cHhhhcC-C
Confidence 999999986655 443 3344568999998887632 1222222 2
Q ss_pred CCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHH
Q 007300 396 VDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 396 ~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~ 473 (609)
.+...+.++|+||+.+.||++.|++|++++.+ ++++|+|+|+|+ .++.+++++.+++..+.++..+.... .+++
T Consensus 224 ~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp--~~~~L~~~a~~l~l~~~vf~G~~~~~--~~~~ 299 (462)
T PLN02846 224 EQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGE--DSDEVKAAAEKLELDVRVYPGRDHAD--PLFH 299 (462)
T ss_pred CCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCc--cHHHHHHHHHhcCCcEEEECCCCCHH--HHHH
Confidence 22223579999999999999999999999865 689999999998 67778888877664444455553332 5899
Q ss_pred hCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCH
Q 007300 474 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 553 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~ 553 (609)
.+|+||+||..|+||++++||||||+|||+++.++ .+++.++.+|+++ .|.++++++|.+++.+. +
T Consensus 300 ~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~------------~~~~~~a~ai~~~l~~~-~ 365 (462)
T PLN02846 300 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTY------------DDGKGFVRATLKALAEE-P 365 (462)
T ss_pred hCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEec------------CCHHHHHHHHHHHHccC-c
Confidence 99999999999999999999999999999999998 5999999999964 68999999999999862 2
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 007300 554 QALAEMMKNGMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 554 ~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l 584 (609)
..+ ... ..+.|||+..+++++++|+--
T Consensus 366 ~~~---~~~-a~~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 366 APL---TDA-QRHELSWEAATERFLRVADLD 392 (462)
T ss_pred hhH---HHH-HHHhCCHHHHHHHHHHHhccC
Confidence 222 222 236899999999999999743
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1e-34 Score=310.92 Aligned_cols=371 Identities=17% Similarity=0.196 Sum_probs=245.8
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEc-Cee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKR-GVD 163 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~ 163 (609)
|||+|+.+.+ ..||.+.++.+|+++|+++||+|+|+|+..+.... ++...+ ++.
T Consensus 1 mkIl~~~~~~----~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~---------------------~~~~~~~~~~ 55 (392)
T cd03805 1 LRVAFIHPDL----GIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHC---------------------FEETKDGTLP 55 (392)
T ss_pred CeEEEECCCC----CCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhc---------------------chhccCCeeE
Confidence 8999998664 36999999999999999999999999975331100 000011 122
Q ss_pred EEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhh--hhccCCCCCCCCCCceEEEecccccchHH
Q 007300 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPR--ILNLNSNKYFSGPYDVVFVANDWHTSLIP 241 (609)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~pDvV~h~h~~~~~~~~ 241 (609)
++.+... ..+ ... .....+..+.+....... ... ..++|+| |+|.+.... +
T Consensus 56 i~~~~~~--~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~Dvi-~~~~~~~~~-~ 108 (392)
T cd03805 56 VRVRGDW--LPR-------SIF---------GRFHILCAYLRMLYLALYLLLLP-------DEKYDVF-IVDQVSACV-P 108 (392)
T ss_pred EEEEeEE--Ecc-------hhh---------HhHHHHHHHHHHHHHHHHHHhcc-------cCCCCEE-EEcCcchHH-H
Confidence 2222110 000 000 000011111111111110 111 1269999 888655432 2
Q ss_pred HHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCc-hhHHHHHHhhcCCEEEe
Q 007300 242 CYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR-KINWMKAGILESDMVLT 320 (609)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~ad~vi~ 320 (609)
+++.. .+.|+++++|.... .+. . ...+.. .++.. ...+.+..++.+|.+++
T Consensus 109 -~~~~~-------~~~~~i~~~h~~~~--~~~-----~---~~~~~~----------~~~~~~~~~~e~~~~~~ad~ii~ 160 (392)
T cd03805 109 -LLKLF-------SPSKILFYCHFPDQ--LLA-----Q---RGSLLK----------RLYRKPFDWLEEFTTGMADKIVV 160 (392)
T ss_pred -HHHHh-------cCCcEEEEEecChH--Hhc-----C---CCcHHH----------HHHHHHHHHHHHHHhhCceEEEE
Confidence 22322 34899999994221 000 0 000000 00001 12344567889999999
Q ss_pred eCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCC
Q 007300 321 VSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNI 400 (609)
Q Consensus 321 vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~ 400 (609)
+|+..++.+.+. ++.. ....+.+|+||+|.+.|.+.... . .+.....+ .+.
T Consensus 161 ~s~~~~~~~~~~--~~~~-----~~~~~~vi~n~vd~~~~~~~~~~-------------------~-~~~~~~~~--~~~ 211 (392)
T cd03805 161 NSNFTASVFKKT--FPSL-----AKNPREVVYPCVDTDSFESTSED-------------------P-DPGLLIPK--SGK 211 (392)
T ss_pred cChhHHHHHHHH--hccc-----ccCCcceeCCCcCHHHcCccccc-------------------c-cccccccC--CCc
Confidence 999999988752 2211 11144699999999888664321 0 11112222 355
Q ss_pred cEEEEEeccccccCHHHHHHHHhhccc-----CCeEEEEEeCCCh------hhHHHHHHHHHh-C--CCceEEEeecChH
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIK-----ENVQIIVLGTGKK------PMEKQLEQLEIL-Y--PEKARGVAKFNIP 466 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~-----~~~~lvivG~g~~------~~~~~l~~l~~~-~--~~~v~~~~~~~~~ 466 (609)
++|+++||+.+.||++.+++|++++.+ ++++|+++|+|+. .+.+.++++..+ . .+++.+.+..+.+
T Consensus 212 ~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~ 291 (392)
T cd03805 212 KTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDS 291 (392)
T ss_pred eEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChH
Confidence 899999999999999999999999864 4899999999863 244667777665 3 3578888888888
Q ss_pred HHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHH
Q 007300 467 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 546 (609)
Q Consensus 467 ~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ 546 (609)
++..+|+.||++++||..|+||++++|||+||+|||+++.||..|++.++.+|+++ ++ |+++++++|.+
T Consensus 292 ~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~----------~~-~~~~~a~~i~~ 360 (392)
T cd03805 292 QKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVDGETGFLC----------EP-TPEEFAEAMLK 360 (392)
T ss_pred HHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhccCCceEEe----------CC-CHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999975 55 89999999999
Q ss_pred HHHhhCHHHHHHHHHHH---HHhhCCchHHHHHH
Q 007300 547 ALATYGTQALAEMMKNG---MAQDLSWKGPAKKW 577 (609)
Q Consensus 547 ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~ 577 (609)
++++ ++...++++++ +.++|||+.+++++
T Consensus 361 l~~~--~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 361 LAND--PDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred HHhC--hHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9998 44555555544 57899999998864
No 29
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=3.1e-34 Score=307.49 Aligned_cols=380 Identities=14% Similarity=0.123 Sum_probs=234.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||++|+.. ...||+|.++.+|++.|.++||+|.++..+......... ..++..
T Consensus 1 mkil~i~~~----l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~----------------------~~~~~~ 54 (405)
T PRK10125 1 MNILQFNVR----LAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVS----------------------HQNYPQ 54 (405)
T ss_pred CeEEEEEee----ecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccc----------------------cCCcce
Confidence 899999976 346999999999999999999999999987332211000 000000
Q ss_pred EEEeCc-------chhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEeccccc
Q 007300 165 VFVDHP-------WFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHT 237 (609)
Q Consensus 165 ~~v~~~-------~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~ 237 (609)
.....+ ..+.++.++.| ++ -..+..+.+.. .+ +|||| |+|..+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~---~~----------------~~~~~~~~i~~-~~--------~pDvi-HlH~~~~ 105 (405)
T PRK10125 55 VIKHTPRMTAMANIALFRLFNRDL---FG----------------NFNELYRTITR-TP--------GPVVL-HFHVLHS 105 (405)
T ss_pred EEEecccHHHHHHHHHHHhcchhh---cc----------------hHHHHHHHHhh-cc--------CCCEE-EEecccC
Confidence 000001 11111111000 10 01112222211 22 59999 9998887
Q ss_pred chHHH--HHHH--hhcCCCcccCceEEEEEecCcc-CCccccccccccCCccccccc---cccccCCCCCc-------CC
Q 007300 238 SLIPC--YLKT--MYKPKGMYKSAKVVFCIHNIAY-QGRFAFEDFGLLNLPAQFKSS---FDFIDGYNKPV-------RG 302 (609)
Q Consensus 238 ~~~~~--~l~~--~~~~~~~~~~~~~v~~iH~~~~-~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~-------~~ 302 (609)
..+.. +++. ..+.. -.++|+|+|+||... .|.+....- -..|... +....+|.+.. +.
T Consensus 106 ~~~~~~~l~~~~~~~~~~--~~~~piV~TlHd~~~~tg~c~~~~~-----C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~ 178 (405)
T PRK10125 106 YWLNLKSVVRFCEKVKNH--KPDVTLVWTLHDHWSVTGRCAFTDG-----CEGWKTGCQKCPTLNNYPPVKVDRAHQLVA 178 (405)
T ss_pred ceecHHHHHHHHhhhhcc--cCCCCEEEecccccccCCCcCCCcc-----cccccccCCCCCCccCCCCCccchHHHHHH
Confidence 53322 2211 00000 157999999998642 233332110 0011111 11111111100 11
Q ss_pred chhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccch
Q 007300 303 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 382 (609)
Q Consensus 303 ~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~ 382 (609)
.+....+...+.++.++++|+..++.+.+. ++. .++.+|+||+|+..+.+....
T Consensus 179 ~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~--~~~--------~~i~vI~NGid~~~~~~~~~~---------------- 232 (405)
T PRK10125 179 GKRQLFREMLALGCQFISPSQHVADAFNSL--YGP--------GRCRIINNGIDMATEAILAEL---------------- 232 (405)
T ss_pred HHHHHHHHHhhcCcEEEEcCHHHHHHHHHH--cCC--------CCEEEeCCCcCcccccccccc----------------
Confidence 122223334456789999999999988752 332 289999999997543322110
Q ss_pred HHHHHHHHHhCCCCCCCCcEEEEEecc--ccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEE
Q 007300 383 LLKEALQAEVGLPVDRNIPVIGFIGRL--EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV 460 (609)
Q Consensus 383 ~~~~~~~~~~gl~~~~~~~~i~~iGrl--~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~ 460 (609)
... . ..++.++|+++|+. .+.||++.|++|+..+. ++++|+|+|+|++.. ..++...
T Consensus 233 ---~~~----~--~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~-~~~~L~ivG~g~~~~-----------~~~v~~~ 291 (405)
T PRK10125 233 ---PPV----R--ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG-DKIELHTFGKFSPFT-----------AGNVVNH 291 (405)
T ss_pred ---ccc----c--cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC-CCeEEEEEcCCCccc-----------ccceEEe
Confidence 000 0 11255789999994 37899999999999884 589999999976311 1235444
Q ss_pred eec-ChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHH
Q 007300 461 AKF-NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 539 (609)
Q Consensus 461 ~~~-~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~ 539 (609)
+.. +...+..+|+.||++|+||.+|+||++++|||+||+|||+|++||++|++.++ +|+++ +++|+++
T Consensus 292 g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv----------~~~d~~~ 360 (405)
T PRK10125 292 GFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTV----------SEEEVLQ 360 (405)
T ss_pred cCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEE----------CCCCHHH
Confidence 322 45567789999999999999999999999999999999999999999999875 99987 9999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 007300 540 VSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 540 la~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l 584 (609)
|++.+...+.+.........+++.+.++|||+.++++|+++|+++
T Consensus 361 La~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 361 LAQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred HHhccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 998654333220000111224455678899999999999999864
No 30
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=9.9e-34 Score=301.65 Aligned_cols=359 Identities=18% Similarity=0.190 Sum_probs=241.6
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++++..+ + .||++.++.+++.+|.+.||+|+++++.... +.+... + + .+....|.++
T Consensus 1 ki~~~~~~~-~---~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~--~~~~~~-----------~--~-~~~~~~g~~~- 59 (372)
T cd03792 1 KVLHVNSTP-Y---GGGVAEILHSLVPLMRDLGVDTRWEVIKGDP--EFFNVT-----------K--K-FHNALQGADI- 59 (372)
T ss_pred CeEEEeCCC-C---CCcHHHHHHHHHHHHHHcCCCceEEecCCCh--hHHHHH-----------H--H-hhHhhcCCCC-
Confidence 689998763 3 6999999999999999999999999975221 000000 0 0 0000001111
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhh-hhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPR-ILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
+ .... .+ ..+......... .+. ..+|||| |+|++....++...
T Consensus 60 -------------------~-------~~~~-~~-~~~~~~~~~~~~~~~~-------~~~~Dvv-~~h~~~~~~~~~~~ 103 (372)
T cd03792 60 -------------------E-------LSEE-EK-EIYLEWNEENAERPLL-------DLDADVV-VIHDPQPLALPLFK 103 (372)
T ss_pred -------------------C-------CCHH-HH-HHHHHHHHHHhccccc-------cCCCCEE-EECCCCchhHHHhh
Confidence 0 1111 00 111111111111 111 1269999 99988743333222
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
+. .++|+|++.|+..... ....+.+++..+..+|.+++.|+.
T Consensus 104 ~~--------~~~~~i~~~H~~~~~~------------------------------~~~~~~~~~~~~~~~d~~i~~~~~ 145 (372)
T cd03792 104 KK--------RGRPWIWRCHIDLSSP------------------------------NRRVWDFLQPYIEDYDAAVFHLPE 145 (372)
T ss_pred hc--------CCCeEEEEeeeecCCC------------------------------cHHHHHHHHHHHHhCCEEeecHHH
Confidence 21 3789999999632100 001234567778899999998843
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
+.. .+++. .++ +||||+|........ ++ +.....+++++|++. +.++|+
T Consensus 146 ~~~-------~~~~~------~~~-vipngvd~~~~~~~~-------~~--------~~~~~~~~~~~~~~~--~~~~i~ 194 (372)
T cd03792 146 YVP-------PQVPP------RKV-IIPPSIDPLSGKNRE-------LS--------PADIEYILEKYGIDP--ERPYIT 194 (372)
T ss_pred hcC-------CCCCC------ceE-EeCCCCCCCccccCC-------CC--------HHHHHHHHHHhCCCC--CCcEEE
Confidence 322 22222 144 999999965311110 11 122456777888764 458999
Q ss_pred EEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCCh---hhHHHHHHHHHh--CCCceEEEeec--ChHHHHHHHHhC
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEIL--YPEKARGVAKF--NIPLAHMIIAGA 475 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~---~~~~~l~~l~~~--~~~~v~~~~~~--~~~~~~~~l~~a 475 (609)
++||+.+.||++.+++|++.+.+ ++++|+|+|+|+. ...+.++++... ..+++.+.+.. +.+++..+|+.|
T Consensus 195 ~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~a 274 (372)
T cd03792 195 QVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRAS 274 (372)
T ss_pred EEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhC
Confidence 99999999999999999998865 6899999999862 233334444422 33456666554 677888899999
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHH
Q 007300 476 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA 555 (609)
Q Consensus 476 Dv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~ 555 (609)
|++++||.+|+||++++|||+||+|||+|+.||..+++.++.+|+++ + +.++++.+|.+++.+ ++.
T Consensus 275 d~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~~g~~~----------~--~~~~~a~~i~~ll~~--~~~ 340 (372)
T cd03792 275 TVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGETGFLV----------D--TVEEAAVRILYLLRD--PEL 340 (372)
T ss_pred eEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCCceEEe----------C--CcHHHHHHHHHHHcC--HHH
Confidence 99999999999999999999999999999999999999999999975 3 567889999999987 556
Q ss_pred HHHHHHHH---HHhhCCchHHHHHHHHHHHHH
Q 007300 556 LAEMMKNG---MAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 556 ~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l 584 (609)
+.+|++++ +.++|||+.++++|+++|+++
T Consensus 341 ~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~~ 372 (372)
T cd03792 341 RRKMGANAREHVRENFLITRHLKDYLYLISKL 372 (372)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhC
Confidence 66666554 568999999999999999863
No 31
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=4.3e-33 Score=294.15 Aligned_cols=357 Identities=18% Similarity=0.178 Sum_probs=240.9
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|+.+++| ...||++.++.+|+++|.++||+|+|+++....... .....|++++
T Consensus 1 ~i~~i~~~~~~-~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~----------------------~~~~~~i~~~ 57 (363)
T cd04955 1 KIAIIGTRGIP-AKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK----------------------ETEYNGVRLI 57 (363)
T ss_pred CeEEEecCcCC-cccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc----------------------ccccCCceEE
Confidence 79999876555 348999999999999999999999999976332110 1123466666
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+..+.... ...+...........+ .. . ++|+| |........+...++
T Consensus 58 ~~~~~~~~~----------------------~~~~~~~~~~~~~~~~-~~-~-------~~~~i-~~~~~~~~~~~~~~~ 105 (363)
T cd04955 58 HIPAPEIGG----------------------LGTIIYDILAILHALF-VK-R-------DIDHV-HALGPAIAPFLPLLR 105 (363)
T ss_pred EcCCCCccc----------------------hhhhHHHHHHHHHHHh-cc-C-------CeEEE-EecCccHHHHHHHHH
Confidence 553221000 0000011111111211 11 0 24555 443322212211222
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
. .+.|+++++|+..+... .... +.........+..++.+|.++++|+..
T Consensus 106 ~--------~~~~~v~~~h~~~~~~~---------~~~~--------------~~~~~~~~~~~~~~~~ad~ii~~s~~~ 154 (363)
T cd04955 106 L--------KGKKVVVNMDGLEWKRA---------KWGR--------------PAKRYLKFGEKLAVKFADRLIADSPGI 154 (363)
T ss_pred h--------cCCCEEEEccCcceeec---------cccc--------------chhHHHHHHHHHHHhhccEEEeCCHHH
Confidence 1 47899999997543110 0000 000011223456778999999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
++.+... +|.. . .+||||+|...+.+. ...+...+++ +.+.++|
T Consensus 155 ~~~~~~~--~~~~--------~-~~i~ngv~~~~~~~~----------------------~~~~~~~~~~---~~~~i~~ 198 (363)
T cd04955 155 KEYLKEK--YGRD--------S-TYIPYGADHVVSSEE----------------------DEILKKYGLE---PGRYYLL 198 (363)
T ss_pred HHHHHHh--cCCC--------C-eeeCCCcChhhcchh----------------------hhhHHhcCCC---CCcEEEE
Confidence 9998642 4432 3 889999998765431 1233445554 2346889
Q ss_pred EeccccccCHHHHHHHHhhcccCCeEEEEEeCCC--hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCC
Q 007300 406 IGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 483 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~ 483 (609)
+||+.+.||++.+++|+.++.. +++|+++|+|+ ..+.+.+.+. ....+++.+.+..+.+....++..||++++||.
T Consensus 199 ~G~~~~~Kg~~~li~a~~~l~~-~~~l~ivG~~~~~~~~~~~~~~~-~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~ 276 (363)
T cd04955 199 VGRIVPENNIDDLIEAFSKSNS-GKKLVIVGNADHNTPYGKLLKEK-AAADPRIIFVGPIYDQELLELLRYAALFYLHGH 276 (363)
T ss_pred EecccccCCHHHHHHHHHhhcc-CceEEEEcCCCCcchHHHHHHHH-hCCCCcEEEccccChHHHHHHHHhCCEEEeCCc
Confidence 9999999999999999999865 89999999984 2344444431 223456888877788888889999999999999
Q ss_pred C-CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 007300 484 F-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 562 (609)
Q Consensus 484 ~-E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~ 562 (609)
. |+||++++|||++|+|||+|+.|+..|++.+ +|+++ ++.|. ++++|.+++++ ++.+.+++++
T Consensus 277 ~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~--~g~~~----------~~~~~--l~~~i~~l~~~--~~~~~~~~~~ 340 (363)
T cd04955 277 SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD--KAIYF----------KVGDD--LASLLEELEAD--PEEVSAMAKA 340 (363)
T ss_pred cCCCCChHHHHHHHcCCCEEEecCCccceeecC--CeeEe----------cCchH--HHHHHHHHHhC--HHHHHHHHHH
Confidence 9 9999999999999999999999999999987 67766 66665 99999999998 4555555554
Q ss_pred H---HHhhCCchHHHHHHHHHHH
Q 007300 563 G---MAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 563 ~---~~~~fs~~~~a~~~~~~~~ 582 (609)
+ +.+.|||+.++++|+++|+
T Consensus 341 ~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 341 ARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhC
Confidence 4 5678999999999999984
No 32
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=6.8e-34 Score=301.46 Aligned_cols=219 Identities=17% Similarity=0.202 Sum_probs=176.6
Q ss_pred hhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcC-CCCccccccccCcchhcccchHHHHHHHH
Q 007300 312 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWN-PLTDKYIGVKYDASTVMDAKPLLKEALQA 390 (609)
Q Consensus 312 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (609)
+..+|.++++|+..++.+.+ +|++.+ ++.+||||+|.+.+. +..
T Consensus 131 ~~~~d~~i~~S~~~~~~~~~---~~~~~~------ki~vi~N~id~~~~~~~~~-------------------------- 175 (359)
T PRK09922 131 ITCADYHLAISSGIKEQMMA---RGISAQ------RISVIYNPVEIKTIIIPPP-------------------------- 175 (359)
T ss_pred hhcCCEEEEcCHHHHHHHHH---cCCCHH------HEEEEcCCCCHHHccCCCc--------------------------
Confidence 36899999999999999986 565554 899999999965442 211
Q ss_pred HhCCCCCCCCcEEEEEeccc--cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecC--
Q 007300 391 EVGLPVDRNIPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFN-- 464 (609)
Q Consensus 391 ~~gl~~~~~~~~i~~iGrl~--~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~-- 464 (609)
...+.++++|+||+. ++||++.+++++.++.. +++|+|+|+|+ ..+.++++..+++ +++.+.+..+
T Consensus 176 -----~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~-~~~l~ivG~g~--~~~~l~~~~~~~~l~~~v~f~G~~~~~ 247 (359)
T PRK09922 176 -----ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQTTG-EWQLHIIGDGS--DFEKCKAYSRELGIEQRIIWHGWQSQP 247 (359)
T ss_pred -----ccCCCcEEEEEEEEecccCcCHHHHHHHHHhhCC-CeEEEEEeCCc--cHHHHHHHHHHcCCCCeEEEecccCCc
Confidence 112457899999996 56999999999998854 89999999997 4566777766543 5677665443
Q ss_pred hHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC-CCCcccccccCcceeEecccccccccCCCCCHHHHHHH
Q 007300 465 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTT 543 (609)
Q Consensus 465 ~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~-~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~ 543 (609)
.+.+..+|+.+|++++||.+|+||++++|||+||+|||+|+ .||..|+|.++.+|+++ +++|+++++++
T Consensus 248 ~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~~~~G~lv----------~~~d~~~la~~ 317 (359)
T PRK09922 248 WEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKPGLNGELY----------TPGNIDEFVGK 317 (359)
T ss_pred HHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccCCCceEEE----------CCCCHHHHHHH
Confidence 36677889999999999999999999999999999999999 89999999999999987 99999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 007300 544 VRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 544 I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
|.+++++++..... .......+|+-+...+++.++|..+.
T Consensus 318 i~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 318 LNKVISGEVKYQHD--AIPNSIERFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHhCcccCCHH--HHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 99999984321122 22223577899999999999998875
No 33
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=285.72 Aligned_cols=368 Identities=20% Similarity=0.266 Sum_probs=268.5
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
++|++|+.+|+|. .||++..++.|++.|.+.||.|.++|-.|++... + +...+|+++
T Consensus 1 ~~i~mVsdff~P~--~ggveshiy~lSq~li~lghkVvvithayg~r~g------------------i---rylt~glkV 57 (426)
T KOG1111|consen 1 SRILMVSDFFYPS--TGGVESHIYALSQCLIRLGHKVVVITHAYGNRVG------------------I---RYLTNGLKV 57 (426)
T ss_pred CcceeeCcccccC--CCChhhhHHHhhcchhhcCCeEEEEeccccCccc------------------e---eeecCCceE
Confidence 5799999999997 8999999999999999999999999999874321 2 223456888
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
|.++....... .|-..+|+ .++++....+ . .+..+| |.|...+.+.--.+
T Consensus 58 yylp~~v~~n~---tT~ptv~~------------~~Pllr~i~l----r----------E~I~iv-hghs~fS~lahe~l 107 (426)
T KOG1111|consen 58 YYLPAVVGYNQ---TTFPTVFS------------DFPLLRPILL----R----------ERIEIV-HGHSPFSYLAHEAL 107 (426)
T ss_pred EEEeeeeeecc---cchhhhhc------------cCcccchhhh----h----------hceEEE-ecCChHHHHHHHHH
Confidence 88764432221 01111121 1222211111 1 147888 99876555554333
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
.... ..|.++|||-|.+ |.+.++.....+ +.++..+...|++||+|..
T Consensus 108 ~har-----tMGlktVfTdHSl-----fGfad~~si~~n----------------------~ll~~sL~~id~~IcVsht 155 (426)
T KOG1111|consen 108 MHAR-----TMGLKTVFTDHSL-----FGFADIGSILTN----------------------KLLPLSLANIDRIICVSHT 155 (426)
T ss_pred HHHH-----hcCceEEEecccc-----ccccchhhhhhc----------------------ceeeeeecCCCcEEEEeec
Confidence 3322 1589999999963 333322211111 2234457789999999998
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
.++-..= .-.++++ ++.+|||.++...|.|.... . .+.+...|+
T Consensus 156 skentvl--r~~L~p~------kvsvIPnAv~~~~f~P~~~~---------------------------~-~S~~i~~iv 199 (426)
T KOG1111|consen 156 SKENTVL--RGALAPA------KVSVIPNAVVTHTFTPDAAD---------------------------K-PSADIITIV 199 (426)
T ss_pred CCCceEE--EeccCHh------HeeeccceeeccccccCccc---------------------------c-CCCCeeEEE
Confidence 8775442 1223333 99999999999999985321 0 123447899
Q ss_pred EEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCCh--hhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEe
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK--PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~--~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
.++||-.+||+|.|+++++++.+ ++++|+|+|+|++ .+++.++++.. .+++.+.+..+.+++.+.|...|+|+.
T Consensus 200 v~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l--~~rV~~lG~v~h~~Vr~vl~~G~IFln 277 (426)
T KOG1111|consen 200 VASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFL--QDRVVMLGTVPHDRVRDVLVRGDIFLN 277 (426)
T ss_pred EEeeeeeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhc--cCceEEecccchHHHHHHHhcCcEEec
Confidence 99999999999999999999976 8999999999994 46666666654 356999999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q 007300 481 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 560 (609)
Q Consensus 481 pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 560 (609)
||..|+|+++++|||+||++||+|..||++|++.+. .-++ ...+++++++++++++..... .-.-.
T Consensus 278 tSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~~-----------~~~~~~dl~~~v~~ai~~~~~--~p~~~ 343 (426)
T KOG1111|consen 278 TSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MITL-----------GEPGPDDLVGAVEKAITKLRT--LPLEF 343 (426)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-ceec-----------cCCChHHHHHHHHHHHHHhcc--CchhH
Confidence 999999999999999999999999999999999876 2222 677889999999999886322 11222
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHcCC
Q 007300 561 KNGMAQDLSWKGPAKKWEETLLNLEVAGS 589 (609)
Q Consensus 561 ~~~~~~~fs~~~~a~~~~~~~~~l~~~~~ 589 (609)
.+.+.+.|+|+..+++.+++|.++.....
T Consensus 344 h~~v~~~y~w~dVa~rTekvy~r~~~t~~ 372 (426)
T KOG1111|consen 344 HDRVKKMYSWKDVAERTEKVYDRAATTSI 372 (426)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhccC
Confidence 34467889999999999999999987653
No 34
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=6.9e-33 Score=292.55 Aligned_cols=351 Identities=19% Similarity=0.229 Sum_probs=247.1
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||++++.. + ..||.+..+..++.+|.++||+|++++....
T Consensus 1 MkIl~~~~~--~--~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~----------------------------------- 41 (365)
T cd03825 1 MKVLHLNTS--D--ISGGAARAAYRLHRALQAAGVDSTMLVQEKK----------------------------------- 41 (365)
T ss_pred CeEEEEecC--C--CCCcHHHHHHHHHHHHHhcCCceeEEEeecc-----------------------------------
Confidence 899999864 3 2599999999999999999999999997611
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
.+ . +.++.. +|||| |+|.+....+....
T Consensus 42 ------~~-~----------------------------------~~~~~~----------~~dii-h~~~~~~~~~~~~~ 69 (365)
T cd03825 42 ------AL-I----------------------------------SKIEII----------NADIV-HLHWIHGGFLSIED 69 (365)
T ss_pred ------hh-h----------------------------------hChhcc----------cCCEE-EEEccccCccCHHH
Confidence 00 0 001111 59999 99976665544333
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccc---cccccCCCC-CcCCchhHHHHHHh-hcCCEEE
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSS---FDFIDGYNK-PVRGRKINWMKAGI-LESDMVL 319 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~k~~~-~~ad~vi 319 (609)
..... .++|+|+++|+..+...-.. . ......+... ..+...+.. .+....+.+.+..+ ..++.++
T Consensus 70 ~~~~~-----~~~~~v~~~hd~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (365)
T cd03825 70 LSKLL-----DRKPVVWTLHDMWPFTGGCH--Y--PGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIV 140 (365)
T ss_pred HHHHH-----cCCCEEEEcccCcccccccC--C--ccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEE
Confidence 32211 38999999998543210000 0 0000000000 000111100 00111122222223 4577899
Q ss_pred eeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCC
Q 007300 320 TVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 399 (609)
Q Consensus 320 ~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 399 (609)
++|+...+.+.+. +.++ ..++.+||||+|.+.|.|.. +...+..++++.+
T Consensus 141 ~~s~~~~~~~~~~--~~~~------~~~~~vi~ngi~~~~~~~~~--------------------~~~~~~~~~~~~~-- 190 (365)
T cd03825 141 APSRWLADCARSS--SLFK------GIPIEVIPNGIDTTIFRPRD--------------------KREARKRLGLPAD-- 190 (365)
T ss_pred ehhHHHHHHHHhc--cccC------CCceEEeCCCCcccccCCCc--------------------HHHHHHHhCCCCC--
Confidence 9999999988762 2222 23899999999998886643 4456777777644
Q ss_pred CcEEEEEecccc--ccCHHHHHHHHhhccc---CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecC-hHHHHHHHH
Q 007300 400 IPVIGFIGRLEE--QKGSDILAAAIPHFIK---ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN-IPLAHMIIA 473 (609)
Q Consensus 400 ~~~i~~iGrl~~--~Kg~~~ll~a~~~l~~---~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~-~~~~~~~l~ 473 (609)
.+++++.|+... .||++.+++++..+.+ ++++++++|.+...... ....++.+.+..+ .+.+..+|+
T Consensus 191 ~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g~~~~~~~~~~~~~ 263 (365)
T cd03825 191 KKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP-------DLPFPVHYLGSLNDDESLALIYS 263 (365)
T ss_pred CeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc-------cCCCceEecCCcCCHHHHHHHHH
Confidence 367777777765 8999999999999875 68999999998732221 2334577777766 677888999
Q ss_pred hCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCH
Q 007300 474 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT 553 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~ 553 (609)
.||++++||..|+||++++|||++|+|||+++.||+.|++.++.+|+++ ++.|+++++++|.+++++ +
T Consensus 264 ~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~----------~~~~~~~~~~~l~~l~~~--~ 331 (365)
T cd03825 264 AADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLA----------KPGDPEDLAEGIEWLLAD--P 331 (365)
T ss_pred hCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEe----------CCCCHHHHHHHHHHHHhC--H
Confidence 9999999999999999999999999999999999999999999999986 889999999999999987 4
Q ss_pred HHHHHHHHH---HHHhhCCchHHHHHHHHHHHHH
Q 007300 554 QALAEMMKN---GMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 554 ~~~~~~~~~---~~~~~fs~~~~a~~~~~~~~~l 584 (609)
+.+.+++++ .+.++|||+.++++|+++|+++
T Consensus 332 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 332 DEREELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 445555544 4578899999999999999864
No 35
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=8.3e-33 Score=291.39 Aligned_cols=353 Identities=19% Similarity=0.247 Sum_probs=250.3
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||+++++.+ ..||.+.++.+|+++|.++||+|++++........... .+....
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-----------------------~~~~~~ 53 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPI-----------------------DATIIL 53 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchh-----------------------hccceE
Confidence 588887663 36999999999999999999999999975321111000 000000
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+... . ....+......+.+.++.. +||+| |+|..++.++..+++
T Consensus 54 ~~~~~---~---------------------~~~~~~~~~~~~~~~~~~~----------~pdiv-~~~~~~~~~~~~l~~ 98 (360)
T cd04951 54 NLNMS---K---------------------NPLSFLLALWKLRKILRQF----------KPDVV-HAHMFHANIFARLLR 98 (360)
T ss_pred Eeccc---c---------------------cchhhHHHHHHHHHHHHhc----------CCCEE-EEcccchHHHHHHHH
Confidence 11000 0 0000111112233333333 59999 999877766666665
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
... .+.+++++.|+....+. ......+.....++.++++|+..
T Consensus 99 ~~~------~~~~~v~~~h~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~s~~~ 141 (360)
T cd04951 99 LFL------PSPPLICTAHSKNEGGR-------------------------------LRMLAYRLTDFLSDLTTNVSKEA 141 (360)
T ss_pred hhC------CCCcEEEEeeccCchhH-------------------------------HHHHHHHHHhhccCceEEEcHHH
Confidence 542 57899999996432110 01122233445688899999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+... .+++.+ ++.+||||+|...+.+... .+..++++++++. +.++++|
T Consensus 142 ~~~~~~~--~~~~~~------~~~~i~ng~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~~l~ 193 (360)
T cd04951 142 LDYFIAS--KAFNAN------KSFVVYNGIDTDRFRKDPA------------------RRLKIRNALGVKN--DTFVILA 193 (360)
T ss_pred HHHHHhc--cCCCcc------cEEEEccccchhhcCcchH------------------HHHHHHHHcCcCC--CCEEEEE
Confidence 9988762 223333 8999999999887765421 2455777888764 4489999
Q ss_pred EeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCcEEEec
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIP 481 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDv~v~p 481 (609)
+||+.+.||++.+++++.++.+ ++++|+|+|+|+ ..+.++++..+++ +++.+.+. .+++..+|+.||++++|
T Consensus 194 ~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~v~~ 269 (360)
T cd04951 194 VGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGP--LRATLERLIKALGLSNRVKLLGL--RDDIAAYYNAADLFVLS 269 (360)
T ss_pred EeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCC--cHHHHHHHHHhcCCCCcEEEecc--cccHHHHHHhhceEEec
Confidence 9999999999999999999865 589999999988 4455666555543 45666553 34566799999999999
Q ss_pred CCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH-
Q 007300 482 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM- 560 (609)
Q Consensus 482 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~- 560 (609)
|..|++|++++|||++|+|||+++.|+..|++.+ +|+.+ +++|+++++++|.+++++. ......+.
T Consensus 270 s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~--~g~~~----------~~~~~~~~~~~i~~ll~~~-~~~~~~~~~ 336 (360)
T cd04951 270 SAWEGFGLVVAEAMACELPVVATDAGGVREVVGD--SGLIV----------PISDPEALANKIDEILKMS-GEERDIIGA 336 (360)
T ss_pred ccccCCChHHHHHHHcCCCEEEecCCChhhEecC--CceEe----------CCCCHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 9999999999999999999999999999999987 77766 8999999999999998642 33333333
Q ss_pred -HHHHHhhCCchHHHHHHHHHHH
Q 007300 561 -KNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 561 -~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
++.+.+.|||+.++++|+++|.
T Consensus 337 ~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 337 RRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhh
Confidence 3456899999999999999996
No 36
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.4e-32 Score=288.72 Aligned_cols=360 Identities=24% Similarity=0.265 Sum_probs=252.2
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|+..|+|. .||.+.++..|+++|.++||+|+++++.......... ..+.+.
T Consensus 1 kIl~i~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-----------------------~~~~~~ 55 (364)
T cd03814 1 RIAIVTDTFLPQ--VNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA-----------------------RVVPVP 55 (364)
T ss_pred CeEEEecccCcc--ccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC-----------------------Cceeec
Confidence 799999998885 5999999999999999999999999987432211100 000010
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccc-hHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTS-LIPCYL 244 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~-~~~~~l 244 (609)
.+..+.+.. .... ...+ ....+.++.. +||+| |+|..... .....+
T Consensus 56 ~~~~~~~~~-------~~~~-----------~~~~----~~~~~~~~~~----------~pdii-~~~~~~~~~~~~~~~ 102 (364)
T cd03814 56 SVPLPGYPE-------IRLA-----------LPPR----RRVRRLLDAF----------APDVV-HIATPGPLGLAALRA 102 (364)
T ss_pred ccccCcccc-------eEec-----------ccch----hhHHHHHHhc----------CCCEE-EEeccchhhHHHHHH
Confidence 000000000 0000 0000 0111122222 59999 87754332 222222
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
... .++|+++++|+...+- . ... .. ...........+..++.+|.++++|+.
T Consensus 103 ~~~-------~~~~~i~~~~~~~~~~--~----~~~-~~--------------~~~~~~~~~~~~~~~~~~d~i~~~s~~ 154 (364)
T cd03814 103 ARR-------LGIPVVTSYHTDFPEY--L----RYY-GL--------------GPLSWLAWAYLRWFHNRADRVLVPSPS 154 (364)
T ss_pred HHH-------cCCCEEEEEecChHHH--h----hhc-cc--------------chHhHhhHHHHHHHHHhCCEEEeCCHH
Confidence 222 5899999999643210 0 000 00 000011134556678899999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
..+.+.+ .+.. ++.+++||+|...+.+... ....+.+++ + .+.++++
T Consensus 155 ~~~~~~~---~~~~--------~~~~~~~g~~~~~~~~~~~-------------------~~~~~~~~~-~--~~~~~i~ 201 (364)
T cd03814 155 LADELRA---RGFR--------RVRLWPRGVDTELFHPRRR-------------------DEALRARLG-P--PDRPVLL 201 (364)
T ss_pred HHHHHhc---cCCC--------ceeecCCCccccccCcccc-------------------cHHHHHHhC-C--CCCeEEE
Confidence 9996664 2222 7899999999988876532 122334444 2 2457999
Q ss_pred EEeccccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCC
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 483 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~ 483 (609)
|+|++.+.||++.+++++.++.+ ++++|+|+|.|. ....++ ....++.+.+..+.+++..+++.||++++||.
T Consensus 202 ~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G~~~--~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~ 275 (364)
T cd03814 202 YVGRLAPEKNLEALLDADLPLRRRPPVRLVIVGDGP--ARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSR 275 (364)
T ss_pred EEeccccccCHHHHHHHHHHhhhcCCceEEEEeCCc--hHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcc
Confidence 99999999999999999999976 589999999987 333333 33456887777788888899999999999999
Q ss_pred CCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 007300 484 FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG 563 (609)
Q Consensus 484 ~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~ 563 (609)
.|+||++++|||+||+|||+++.++..|++.++.+|+++ ++.|.++++++|.+++++ ++.+.++++++
T Consensus 276 ~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~----------~~~~~~~l~~~i~~l~~~--~~~~~~~~~~~ 343 (364)
T cd03814 276 TETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLV----------EPGDAEAFAAALAALLAD--PELRRRMAARA 343 (364)
T ss_pred cccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEc----------CCCCHHHHHHHHHHHHcC--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999987 999999999999999997 66666776666
Q ss_pred H--HhhCCchHHHHHHHHHHH
Q 007300 564 M--AQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 564 ~--~~~fs~~~~a~~~~~~~~ 582 (609)
. .++|||+.++++++++|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 344 RAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHhhcCHHHHHHHHHHhhC
Confidence 3 368999999999999873
No 37
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=9.7e-33 Score=292.45 Aligned_cols=272 Identities=22% Similarity=0.284 Sum_probs=212.0
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCch
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 304 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (609)
+||+| |+|....+.....+.+. .++|+++++|+......... . .... ....
T Consensus 82 ~~dvv-h~~~~~~~~~~~~~~~~-------~~~p~i~~~h~~~~~~~~~~---~---~~~~---------------~~~~ 132 (367)
T cd05844 82 RPDLV-HAHFGFDGVYALPLARR-------LGVPLVVTFHGFDATTSLAL---L---LRSR---------------WALY 132 (367)
T ss_pred CCCEE-EeccCchHHHHHHHHHH-------cCCCEEEEEeCccccccchh---h---cccc---------------hhHH
Confidence 59999 99866555544444433 58999999996432110000 0 0000 0112
Q ss_pred hHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHH
Q 007300 305 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 384 (609)
Q Consensus 305 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
....+..++.+|.++++|+..++.+.+ +|.+.+ ++.+++||+|.+.+.+...
T Consensus 133 ~~~~~~~~~~~d~ii~~s~~~~~~~~~---~~~~~~------~i~vi~~g~d~~~~~~~~~------------------- 184 (367)
T cd05844 133 ARRRRRLARRAALFIAVSQFIRDRLLA---LGFPPE------KVHVHPIGVDTAKFTPATP------------------- 184 (367)
T ss_pred HHHHHHHHHhcCEEEECCHHHHHHHHH---cCCCHH------HeEEecCCCCHHhcCCCCC-------------------
Confidence 234566778999999999999999986 455544 8999999999887765421
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEE
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGV 460 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~--~~~v~~~ 460 (609)
..+.+.++|+|++.+.||++.+++|+..+.+ ++++|+|+|+|+ ..+.++++..++ ..++.+.
T Consensus 185 ------------~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~ 250 (367)
T cd05844 185 ------------ARRPPRILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDGP--LLAALEALARALGLGGRVTFL 250 (367)
T ss_pred ------------CCCCcEEEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCch--HHHHHHHHHHHcCCCCeEEEC
Confidence 1244789999999999999999999999865 689999999987 566777777663 4568777
Q ss_pred eecChHHHHHHHHhCcEEEecCC------CCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCC
Q 007300 461 AKFNIPLAHMIIAGADFILIPSR------FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 534 (609)
Q Consensus 461 ~~~~~~~~~~~l~~aDv~v~pS~------~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~ 534 (609)
+..+.+++..+|+.||++++||. .|+||++++|||++|+|||+++.+|..|++.++.+|+++ ++
T Consensus 251 g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~g~~~----------~~ 320 (367)
T cd05844 251 GAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGETGLLV----------PE 320 (367)
T ss_pred CCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCeeEEE----------CC
Confidence 77788888899999999999997 499999999999999999999999999999999999987 89
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHH---HHhhCCchHHHHHHHH
Q 007300 535 VDVAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEE 579 (609)
Q Consensus 535 ~d~~~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~ 579 (609)
.|+++++++|.+++++ ++.+.++++++ +.+.|||+..++++++
T Consensus 321 ~d~~~l~~~i~~l~~~--~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 321 GDVAALAAALGRLLAD--PDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred CCHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999999999999987 55555555444 5789999999999875
No 38
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=1e-32 Score=288.64 Aligned_cols=357 Identities=20% Similarity=0.205 Sum_probs=255.0
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|...+.+ ||.+.++..|+++|.+.||+|.+++......... .....|++++
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~i~v~ 55 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTDRGELGE---------------------ELEEAGVPVY 55 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCcchhhhH---------------------HHHhcCCeEE
Confidence 78999988644 9999999999999999999999999752211000 0001245554
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+..+.... .......+.+.++.. +||+| |+|.++.........
T Consensus 56 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~----------~~div-~~~~~~~~~~~~~~~ 99 (365)
T cd03807 56 CLGKRPGRP-------------------------DPGALLRLYKLIRRL----------RPDVV-HTWMYHADLYGGLAA 99 (365)
T ss_pred EEecccccc-------------------------cHHHHHHHHHHHHhh----------CCCEE-EeccccccHHHHHHH
Confidence 443221100 001112233333333 59999 888777666555544
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
... .+.++++++|+...... .. .........+.....+|.++++|+..
T Consensus 100 ~~~------~~~~~i~~~~~~~~~~~-------------~~-------------~~~~~~~~~~~~~~~~~~~i~~s~~~ 147 (365)
T cd03807 100 RLA------GVPPVIWGIRHSDLDLG-------------KK-------------STRLVARLRRLLSSFIPLIVANSAAA 147 (365)
T ss_pred Hhc------CCCcEEEEecCCccccc-------------ch-------------hHhHHHHHHHHhccccCeEEeccHHH
Confidence 431 47899999997554211 00 00012233455567899999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+.+ ++.+.+ ++.+++||+|...+.+.... +..++++++++. +.++|+|
T Consensus 148 ~~~~~~---~~~~~~------~~~vi~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~--~~~~i~~ 198 (365)
T cd03807 148 AEYHQA---IGYPPK------KIVVIPNGVDTERFSPDLDA------------------RARLREELGLPE--DTFLIGI 198 (365)
T ss_pred HHHHHH---cCCChh------heeEeCCCcCHHhcCCcccc------------------hHHHHHhcCCCC--CCeEEEE
Confidence 999986 355444 88999999998877654321 445567778764 4489999
Q ss_pred EeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHH-h--CCCceEEEeecChHHHHHHHHhCcEEEe
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEI-L--YPEKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~-~--~~~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
+|++.+.||++.+++++..+.+ ++++|+|+|.+.. ...+++... . ...++.+.+. .+++..+|+.||++++
T Consensus 199 ~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ 274 (365)
T cd03807 199 VARLHPQKDHATLLRAAALLLKKFPNARLLLVGDGPD--RANLELLALKELGLEDKVILLGE--RSDVPALLNALDVFVL 274 (365)
T ss_pred ecccchhcCHHHHHHHHHHHHHhCCCeEEEEecCCcc--hhHHHHHHHHhcCCCceEEEccc--cccHHHHHHhCCEEEe
Confidence 9999999999999999999865 6899999999873 233333332 2 2334555442 3456679999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q 007300 481 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 560 (609)
Q Consensus 481 pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 560 (609)
||..|++|++++|||++|+|||+++.|+..|++.+ +|+++ +++|+++++++|.+++++ ++.+.+++
T Consensus 275 ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~--~g~~~----------~~~~~~~l~~~i~~l~~~--~~~~~~~~ 340 (365)
T cd03807 275 SSLSEGFPNVLLEAMACGLPVVATDVGDNAELVGD--TGFLV----------PPGDPEALAEAIEALLAD--PALRQALG 340 (365)
T ss_pred CCccccCCcHHHHHHhcCCCEEEcCCCChHHHhhc--CCEEe----------CCCCHHHHHHHHHHHHhC--hHHHHHHH
Confidence 99999999999999999999999999999999988 88876 889999999999999998 45555555
Q ss_pred HHH---HHhhCCchHHHHHHHHHHH
Q 007300 561 KNG---MAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 561 ~~~---~~~~fs~~~~a~~~~~~~~ 582 (609)
+++ +.++|||+.++++|+++|+
T Consensus 341 ~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 341 EAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 444 5788999999999999884
No 39
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=8.2e-33 Score=291.26 Aligned_cols=338 Identities=22% Similarity=0.243 Sum_probs=238.9
Q ss_pred ccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEEEEeCcchhhhhcC
Q 007300 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWG 178 (609)
Q Consensus 99 ~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~~~ 178 (609)
..||++.++.+|+++|+++||+|.++++..... .. ....|++++.+.... .
T Consensus 8 ~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~----------------------~~~~~~~~~~~~~~~--~---- 58 (355)
T cd03819 8 ESGGVERGTLELARALVERGHRSLVASAGGRLV-AE----------------------LEAEGSRHIKLPFIS--K---- 58 (355)
T ss_pred ccCcHHHHHHHHHHHHHHcCCEEEEEcCCCchH-HH----------------------HHhcCCeEEEccccc--c----
Confidence 359999999999999999999999998752211 10 011133333221100 0
Q ss_pred CCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHHHhhcCCCcccCce
Q 007300 179 KTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAK 258 (609)
Q Consensus 179 ~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~ 258 (609)
... ........+...++.. +||+| |+|.....+...++... .++|
T Consensus 59 ----~~~-------------~~~~~~~~l~~~~~~~----------~~dii-~~~~~~~~~~~~~~~~~-------~~~~ 103 (355)
T cd03819 59 ----NPL-------------RILLNVARLRRLIREE----------KVDIV-HARSRAPAWSAYLAARR-------TRPP 103 (355)
T ss_pred ----chh-------------hhHHHHHHHHHHHHHc----------CCCEE-EECCCchhHHHHHHHHh-------cCCC
Confidence 000 0111112223333332 59999 99876655554444432 4899
Q ss_pred EEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCcc
Q 007300 259 VVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 338 (609)
Q Consensus 259 ~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~ 338 (609)
+++++|+.... ..+.+..+..+|.++++|+...+.+.+ .++++
T Consensus 104 ~i~~~h~~~~~-----------------------------------~~~~~~~~~~~~~vi~~s~~~~~~~~~--~~~~~ 146 (355)
T cd03819 104 FVTTVHGFYSV-----------------------------------NFRYNAIMARGDRVIAVSNFIADHIRE--NYGVD 146 (355)
T ss_pred EEEEeCCchhh-----------------------------------HHHHHHHHHhcCEEEEeCHHHHHHHHH--hcCCC
Confidence 99999964320 013455677899999999999999984 25555
Q ss_pred chhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHH
Q 007300 339 LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDIL 418 (609)
Q Consensus 339 ~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~l 418 (609)
.+ ++.+|+||+|...|.+.... ......+++.++++. +.++++|+||+.+.||++.+
T Consensus 147 ~~------k~~~i~ngi~~~~~~~~~~~---------------~~~~~~~~~~~~~~~--~~~~i~~~Gr~~~~Kg~~~l 203 (355)
T cd03819 147 PD------RIRVIPRGVDLDRFDPGAVP---------------PERILALAREWPLPK--GKPVILLPGRLTRWKGQEVF 203 (355)
T ss_pred hh------hEEEecCCccccccCccccc---------------hHHHHHHHHHcCCCC--CceEEEEeeccccccCHHHH
Confidence 44 89999999999888654311 111223567777654 44899999999999999999
Q ss_pred HHHHhhccc--CCeEEEEEeCCCh--hhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCcEEEecC-CCCCCcHHH
Q 007300 419 AAAIPHFIK--ENVQIIVLGTGKK--PMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIPS-RFEPCGLIQ 491 (609)
Q Consensus 419 l~a~~~l~~--~~~~lvivG~g~~--~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDv~v~pS-~~E~~gl~~ 491 (609)
++++..+.+ ++++|+|+|.+.. .+.+.+.++..+++ +++.+.+. .+++..+|+.||++++|| ..|++|+++
T Consensus 204 i~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l 281 (355)
T cd03819 204 IEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTA 281 (355)
T ss_pred HHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHH
Confidence 999999977 6899999999863 34455555555443 45665554 455678999999999999 789999999
Q ss_pred HHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHH---HHHHHHhhC
Q 007300 492 LHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM---MKNGMAQDL 568 (609)
Q Consensus 492 lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~---~~~~~~~~f 568 (609)
+|||++|+|||+++.||..|++.++.+|+++ +++|+++++++|.+++... ++.+.++ +++.+.++|
T Consensus 282 ~EA~a~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~~~~~l~~~i~~~~~~~-~~~~~~~~~~a~~~~~~~f 350 (355)
T cd03819 282 VEAQAMGRPVIASDHGGARETVRPGETGLLV----------PPGDAEALAQALDQILSLL-PEGRAKMFAKARMCVETLF 350 (355)
T ss_pred HHHHhcCCCEEEcCCCCcHHHHhCCCceEEe----------CCCCHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999987 9999999999997666531 4444444 445568999
Q ss_pred CchHH
Q 007300 569 SWKGP 573 (609)
Q Consensus 569 s~~~~ 573 (609)
||+.+
T Consensus 351 ~~~~~ 355 (355)
T cd03819 351 SYDRM 355 (355)
T ss_pred hhccC
Confidence 99853
No 40
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.6e-32 Score=288.96 Aligned_cols=349 Identities=21% Similarity=0.253 Sum_probs=243.7
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|+.+|+|. .||.+.++.+|+++|.++||+|++++.......... ...+.++.
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----------------------~~~~~~~~ 56 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPEPKGRDE----------------------ERNGHRVI 56 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCCCcchhh----------------------hccCceEE
Confidence 799999999886 899999999999999999999999997643221100 01122222
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+.. +.. ... ...... ....++ +.. .+||+| |+|............
T Consensus 57 ~~~~--~~~---------~~~-------~~~~~~-------~~~~~~-~~~-------~~~Dii-~~~~~~~~~~~~~~~ 102 (357)
T cd03795 57 RAPS--LLN---------VAS-------TPFSPS-------FFKQLK-KLA-------KKADVI-HLHFPNPLADLALLL 102 (357)
T ss_pred Eeec--ccc---------ccc-------ccccHH-------HHHHHH-hcC-------CCCCEE-EEecCcchHHHHHHH
Confidence 2211 000 000 000000 000111 111 159999 888633322211111
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
.. .+.|+++++|+...... . .......+++..++.+|.++++|+.+
T Consensus 103 ~~-------~~~~~i~~~h~~~~~~~--------------~-------------~~~~~~~~~~~~~~~~d~vi~~s~~~ 148 (357)
T cd03795 103 LP-------RKKPVVVHWHSDIVKQK--------------L-------------LLKLYRPLQRRFLRRADAIVATSPNY 148 (357)
T ss_pred hc-------cCceEEEEEcChhhccc--------------h-------------hhhhhhHHHHHHHHhcCEEEeCcHHH
Confidence 11 47899999996322110 0 00112245567889999999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+.....+ . . ++.+||||+|...+.+.... .. .....+ .+.++|+|
T Consensus 149 ~~~~~~~~~~--~-~------~~~~i~~gi~~~~~~~~~~~------------------~~---~~~~~~--~~~~~i~~ 196 (357)
T cd03795 149 AETSPVLRRF--R-D------KVRVIPLGLDPARYPRPDAL------------------EE---AIWRRA--AGRPFFLF 196 (357)
T ss_pred HHHHHHhcCC--c-c------ceEEecCCCChhhcCCcchh------------------hh---HhhcCC--CCCcEEEE
Confidence 9987652111 1 2 88999999999887654310 00 111222 34589999
Q ss_pred EeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeecChHHHHHHHHhCcEEEecCC
Q 007300 406 IGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFILIPSR 483 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~ 483 (609)
+||+.+.||++.+++|++++. +++|+|+|+|+ ....++++..+. ..++.+.+..+.+++..+++.||++++||.
T Consensus 197 ~G~~~~~K~~~~li~a~~~l~--~~~l~i~G~g~--~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~ 272 (357)
T cd03795 197 VGRLVYYKGLDVLLEAAAALP--DAPLVIVGEGP--LEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSV 272 (357)
T ss_pred ecccccccCHHHHHHHHHhcc--CcEEEEEeCCh--hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCc
Confidence 999999999999999999996 89999999987 556666666443 357888877788888899999999999996
Q ss_pred --CCCCcHHHHHHHHcCCceEEcCCCCccccccc-CcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q 007300 484 --FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 560 (609)
Q Consensus 484 --~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~-~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 560 (609)
.|+||++++|||++|+|||+++.++..+.+.+ +.+|+++ +++|+++++++|.+++++ ++.+.+|+
T Consensus 273 ~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~~~g~~~----------~~~d~~~~~~~i~~l~~~--~~~~~~~~ 340 (357)
T cd03795 273 ERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHGVTGLVV----------PPGDPAALAEAIRRLLED--PELRERLG 340 (357)
T ss_pred ccccccchHHHHHHHcCCCEEecCCCCchhHHhhCCCceEEe----------CCCCHHHHHHHHHHHHHC--HHHHHHHH
Confidence 49999999999999999999999999999886 8999987 999999999999999998 55555555
Q ss_pred HHH---HHhhCCchHHH
Q 007300 561 KNG---MAQDLSWKGPA 574 (609)
Q Consensus 561 ~~~---~~~~fs~~~~a 574 (609)
+++ +.+.|||+.++
T Consensus 341 ~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 341 EAARERAEEEFTADRMV 357 (357)
T ss_pred HHHHHHHHHhcchHhhC
Confidence 554 67899999764
No 41
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=3.1e-32 Score=285.38 Aligned_cols=357 Identities=18% Similarity=0.213 Sum_probs=245.2
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||+++++.++| ...||.+.++.+|+++|+++||+|+++++............. ........ .
T Consensus 1 kIl~i~~~~~~-~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~------------~~~~~~~~-----~ 62 (359)
T cd03823 1 RILVVNHLYPP-RSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIG------------VVVYGRPI-----D 62 (359)
T ss_pred CeeEEcccCCc-ccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCccccccc------------ceeecccc-----c
Confidence 79999999877 456999999999999999999999999987443222100000 00000000 0
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
......... ..+ .........+.....+.++.. +||+| |+|.+........ .
T Consensus 63 ~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~----------~~dii-~~~~~~~~~~~~~-~ 114 (359)
T cd03823 63 EVLRSALPR--------DLF--------HLSDYDNPAVVAEFARLLEDF----------RPDVV-HFHHLQGLGVSIL-R 114 (359)
T ss_pred cccCCCchh--------hhh--------HHHhccCHHHHHHHHHHHHHc----------CCCEE-EECCccchHHHHH-H
Confidence 000000000 000 000000011223333333333 59999 8887633322222 2
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
...+ .++|+++++|+....... ........|.++++|+..
T Consensus 115 ~~~~-----~~~~~i~~~hd~~~~~~~-----------------------------------~~~~~~~~d~ii~~s~~~ 154 (359)
T cd03823 115 AARD-----RGIPIVLTLHDYWLICPR-----------------------------------QGLFKKGGDAVIAPSRFL 154 (359)
T ss_pred HHHh-----cCCCEEEEEeeeeeecch-----------------------------------hhhhccCCCEEEEeCHHH
Confidence 1111 479999999964321000 000112239999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+.+ ++... .++.+|+||+|...+.+... +. ..+.++|+|
T Consensus 155 ~~~~~~---~~~~~------~~~~vi~n~~~~~~~~~~~~---------------------------~~--~~~~~~i~~ 196 (359)
T cd03823 155 LDRYVA---NGLFA------EKISVIRNGIDLDRAKRPRR---------------------------AP--PGGRLRFGF 196 (359)
T ss_pred HHHHHH---cCCCc------cceEEecCCcChhhcccccc---------------------------CC--CCCceEEEE
Confidence 999886 33322 28999999999887755421 11 124578999
Q ss_pred EeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCC-C
Q 007300 406 IGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR-F 484 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~-~ 484 (609)
+|++.+.||++.+++++..+.+++++|+++|.+.......... ....++.+.+..+.+++..+++.||++++||. .
T Consensus 197 ~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~ 273 (359)
T cd03823 197 IGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYEL---EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWP 273 (359)
T ss_pred EecCccccCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhh---cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCccc
Confidence 9999999999999999999976789999999987433222221 34456888777788888899999999999998 5
Q ss_pred CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 007300 485 EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 564 (609)
Q Consensus 485 E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 564 (609)
|++|++++|||++|+|||+++.++..|++.++.+|+++ +++|+++++++|.+++++ ++.+.++++++.
T Consensus 274 e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~~g~~~----------~~~d~~~l~~~i~~l~~~--~~~~~~~~~~~~ 341 (359)
T cd03823 274 ENFPLVIREALAAGVPVIASDIGGMAELVRDGVNGLLF----------PPGDAEDLAAALERLIDD--PDLLERLRAGIE 341 (359)
T ss_pred CCCChHHHHHHHCCCCEEECCCCCHHHHhcCCCcEEEE----------CCCCHHHHHHHHHHHHhC--hHHHHHHHHhHH
Confidence 99999999999999999999999999999999999987 999999999999999997 677777777654
Q ss_pred HhhCCchHHHHHHHHHHH
Q 007300 565 AQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 565 ~~~fs~~~~a~~~~~~~~ 582 (609)
+.++.+.++++|+++|+
T Consensus 342 -~~~~~~~~~~~~~~~~~ 358 (359)
T cd03823 342 -PPRSIEDQAEEYLKLYR 358 (359)
T ss_pred -HhhhHHHHHHHHHHHhh
Confidence 33455999999999886
No 42
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=5.1e-32 Score=285.80 Aligned_cols=383 Identities=20% Similarity=0.207 Sum_probs=259.1
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|+..++|. .||.+.++..++++|+++||+|+++++............ .......|++++
T Consensus 1 kIl~i~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 63 (394)
T cd03794 1 KILILSQYFPPE--LGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKG---------------YKREEVDGVRVH 63 (394)
T ss_pred CEEEEecccCCc--cCCcceeHHHHHHHHHhCCceEEEEecCCCccccccccc---------------ceEEecCCeEEE
Confidence 799999998775 499999999999999999999999997643222110000 111223456665
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccc-cchHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWH-TSLIPCYL 244 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~-~~~~~~~l 244 (609)
.+........ . +.....++..+.......... .. .+||+| |+|.+. ....+...
T Consensus 64 ~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~-~~-------~~~D~v-~~~~~~~~~~~~~~~ 118 (394)
T cd03794 64 RVPLPPYKKN-------G---------LLKRLLNYLSFALSALLALLK-RR-------RRPDVI-IATSPPLLIALAALL 118 (394)
T ss_pred EEecCCCCcc-------c---------hHHHHHhhhHHHHHHHHHHHh-cc-------cCCCEE-EEcCChHHHHHHHHH
Confidence 5532211110 0 111122222233333333221 11 169999 887522 22222222
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
.... .++|+++++|+..+....... ...... ........+++..+..+|.++++|+.
T Consensus 119 ~~~~------~~~~~i~~~h~~~~~~~~~~~-----~~~~~~------------~~~~~~~~~~~~~~~~~d~vi~~s~~ 175 (394)
T cd03794 119 LARL------KGAPFVLEVRDLWPESAVALG-----LLKNGS------------LLYRLLRKLERLIYRRADAIVVISPG 175 (394)
T ss_pred HHHh------cCCCEEEEehhhcchhHHHcc-----Cccccc------------hHHHHHHHHHHHHHhcCCEEEEECHH
Confidence 2221 489999999975432111100 000000 00011234457778899999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
.++.+.. ++.... ++.+||||+|...+.+.... .. +..... ..+.++|+
T Consensus 176 ~~~~~~~---~~~~~~------~~~~i~~~~~~~~~~~~~~~-------------------~~-~~~~~~--~~~~~~i~ 224 (394)
T cd03794 176 MREYLVR---RGVPPE------KISVIPNGVDLELFKPPPAD-------------------ES-LRKELG--LDDKFVVL 224 (394)
T ss_pred HHHHHHh---cCCCcC------ceEEcCCCCCHHHcCCccch-------------------hh-hhhccC--CCCcEEEE
Confidence 9999873 333333 89999999998877655321 01 222222 23558999
Q ss_pred EEeccccccCHHHHHHHHhhcccC-CeEEEEEeCCChhhHHHHHHHHHh-CCCceEEEeecChHHHHHHHHhCcEEEecC
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIKE-NVQIIVLGTGKKPMEKQLEQLEIL-YPEKARGVAKFNIPLAHMIIAGADFILIPS 482 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~~-~~~lvivG~g~~~~~~~l~~l~~~-~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS 482 (609)
|+|++.+.||++.+++++.++.+. +++|+|+|+|. ..+.+.++... ...++.+.+..+.+++..+|+.||++++|+
T Consensus 225 ~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~ 302 (394)
T cd03794 225 YAGNIGRAQGLDTLLEAAALLKDRPDIRFLIVGDGP--EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPL 302 (394)
T ss_pred EecCcccccCHHHHHHHHHHHhhcCCeEEEEeCCcc--cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEec
Confidence 999999999999999999999764 89999999987 44445554332 224688877778888889999999999999
Q ss_pred CCCCC-----cHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHH
Q 007300 483 RFEPC-----GLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALA 557 (609)
Q Consensus 483 ~~E~~-----gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~ 557 (609)
..|++ |++++|||++|+|||+++.++..+++.++.+|+++ +++|+++++++|.+++.+ ++.+.
T Consensus 303 ~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~~~g~~~----------~~~~~~~l~~~i~~~~~~--~~~~~ 370 (394)
T cd03794 303 KPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVV----------PPGDPEALAAAILELLDD--PEERA 370 (394)
T ss_pred cCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccCCcceEe----------CCCCHHHHHHHHHHHHhC--hHHHH
Confidence 98875 88899999999999999999999999998999987 889999999999999977 55556
Q ss_pred HHHHHH---HHhhCCchHHHHHHH
Q 007300 558 EMMKNG---MAQDLSWKGPAKKWE 578 (609)
Q Consensus 558 ~~~~~~---~~~~fs~~~~a~~~~ 578 (609)
++++++ ..++|||+.++++|+
T Consensus 371 ~~~~~~~~~~~~~~s~~~~~~~~~ 394 (394)
T cd03794 371 EMGENGRRYVEEKFSREKLAERLL 394 (394)
T ss_pred HHHHHHHHHHHHhhcHHHHHHhcC
Confidence 665554 467999999999873
No 43
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=2.8e-32 Score=305.34 Aligned_cols=283 Identities=14% Similarity=0.142 Sum_probs=201.5
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEE-EEecCccCCccccccccccCCccccccccccccCCCCCcCCc
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF-CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 303 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~-~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (609)
+|||| |+|.....++..+.... .++|+|+ +.|+... .. . +..+ ..
T Consensus 400 kpDIV-H~h~~~a~~lg~lAa~~-------~gvPvIv~t~h~~~~-~~-~---------~~~~---------------~~ 445 (694)
T PRK15179 400 VPSVV-HIWQDGSIFACALAALL-------AGVPRIVLSVRTMPP-VD-R---------PDRY---------------RV 445 (694)
T ss_pred CCcEE-EEeCCcHHHHHHHHHHH-------cCCCEEEEEeCCCcc-cc-c---------hhHH---------------HH
Confidence 59999 99987776666555543 4788876 5564321 00 0 0000 00
Q ss_pred hhHHHHHHhh--cCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccc
Q 007300 304 KINWMKAGIL--ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 381 (609)
Q Consensus 304 ~~~~~k~~~~--~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~ 381 (609)
........+. .++.++++|...++.+.+ .+|++.+ ++.+||||+|...|.+....
T Consensus 446 ~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~--~~g~~~~------kI~VI~NGVd~~~f~~~~~~--------------- 502 (694)
T PRK15179 446 EYDIIYSELLKMRGVALSSNSQFAAHRYAD--WLGVDER------RIPVVYNGLAPLKSVQDDAC--------------- 502 (694)
T ss_pred HHHHHHHHHHhcCCeEEEeCcHHHHHHHHH--HcCCChh------HEEEECCCcCHHhcCCCchh---------------
Confidence 0011111222 345667777777777764 2465555 89999999998877653210
Q ss_pred hHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--Cce
Q 007300 382 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKA 457 (609)
Q Consensus 382 ~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v 457 (609)
+. .+..+......+.++|+++||+.+.||++.+++|+.++.+ ++++|+|+|+|+ ..+.++++..+++ ++|
T Consensus 503 ---~~-~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~--~~~~L~~l~~~lgL~~~V 576 (694)
T PRK15179 503 ---TA-MMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGP--LLESVREFAQRLGMGERI 576 (694)
T ss_pred ---hH-HHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCc--chHHHHHHHHHcCCCCcE
Confidence 11 1111221112345799999999999999999999998865 689999999997 6677777777655 456
Q ss_pred EEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCC-
Q 007300 458 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVD- 536 (609)
Q Consensus 458 ~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d- 536 (609)
.+.+ +. +++..+|+.+|++++||.+|+||++++|||+||+|||+|+.||..|+|.++.+|+++ +++|
T Consensus 577 ~flG-~~-~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv----------~~~d~ 644 (694)
T PRK15179 577 LFTG-LS-RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTL----------PADTV 644 (694)
T ss_pred EEcC-Cc-chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEe----------CCCCC
Confidence 5544 44 346679999999999999999999999999999999999999999999999999987 7766
Q ss_pred -HHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007300 537 -VAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 537 -~~~la~~I~~ll~~~~-~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
+++++++|.+++.+.. .+.+.+.+++.+.++|||+.++++|+++|+
T Consensus 645 ~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 645 TAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQ 692 (694)
T ss_pred ChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 4689999988887532 244555555556789999999999999995
No 44
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.4e-31 Score=281.40 Aligned_cols=341 Identities=21% Similarity=0.224 Sum_probs=246.1
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++++..|+| |.+.++.+++.+|.++||+|+|+++.........+. .
T Consensus 1 ki~~~~~~~~~-----~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~-----------------~---------- 48 (355)
T cd03799 1 KIAYLVKEFPR-----LSETFILREILALEAAGHEVEIFSLRPPEDTLVHPE-----------------D---------- 48 (355)
T ss_pred CEEEECCCCCC-----cchHHHHHHHHHHHhCCCeEEEEEecCccccccccc-----------------c----------
Confidence 79999998644 367899999999999999999999874322110000 0
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
...+.... |......+..+...+...++.. ++|+| |+|..........+.
T Consensus 49 -~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~----------~~Dii-~~~~~~~~~~~~~~~ 98 (355)
T cd03799 49 -RAELARTR------------------YLARSLALLAQALVLARELRRL----------GIDHI-HAHFGTTPATVAMLA 98 (355)
T ss_pred -cccccchH------------------HHHHHHHHHHHHHHHHHHHHhc----------CCCEE-EECCCCchHHHHHHH
Confidence 00000000 0001111111112222222222 59999 998765544444443
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
... .+.|+++++|+...... ....+++..++.+|.++++|+..
T Consensus 99 ~~~------~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~vi~~s~~~ 141 (355)
T cd03799 99 SRL------GGIPYSFTAHGKDIFRS-------------------------------PDAIDLDEKLARADFVVAISEYN 141 (355)
T ss_pred HHh------cCCCEEEEEeccccccc-------------------------------CchHHHHHHHhhCCEEEECCHHH
Confidence 332 47899999995332100 01145677788999999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
++.+.+. ++.... ++.+|+||+|.+.+.+... ....+.+.|+|
T Consensus 142 ~~~l~~~--~~~~~~------~~~vi~~~~d~~~~~~~~~-----------------------------~~~~~~~~i~~ 184 (355)
T cd03799 142 RQQLIRL--LGCDPD------KIHVVHCGVDLERFPPRPP-----------------------------PPPGEPLRILS 184 (355)
T ss_pred HHHHHHh--cCCCcc------cEEEEeCCcCHHHcCCccc-----------------------------cccCCCeEEEE
Confidence 9999863 244333 8999999999887765420 01124578999
Q ss_pred EeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeecChHHHHHHHHhCcEEEec
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFILIP 481 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~aDv~v~p 481 (609)
+|++.+.||++.+++++.++.+ ++++|+++|.++ ....++++..++ +.++.+.+..+.+++..+|+.||++++|
T Consensus 185 ~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~ 262 (355)
T cd03799 185 VGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGP--LRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLP 262 (355)
T ss_pred EeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCc--cHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEec
Confidence 9999999999999999999876 589999999987 445555555543 3568887777888888999999999999
Q ss_pred CCC------CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHH
Q 007300 482 SRF------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQA 555 (609)
Q Consensus 482 S~~------E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~ 555 (609)
|.. |++|++++|||++|+|||+++.|+..+++.++.+|+++ +++|+++++++|.+++++ ++.
T Consensus 263 s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~~~g~~~----------~~~~~~~l~~~i~~~~~~--~~~ 330 (355)
T cd03799 263 SVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDGETGLLV----------PPGDPEALADAIERLLDD--PEL 330 (355)
T ss_pred ceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCCCceEEe----------CCCCHHHHHHHHHHHHhC--HHH
Confidence 999 99999999999999999999999999999999999987 889999999999999987 555
Q ss_pred HHHHHHHH---HHhhCCchHHHHH
Q 007300 556 LAEMMKNG---MAQDLSWKGPAKK 576 (609)
Q Consensus 556 ~~~~~~~~---~~~~fs~~~~a~~ 576 (609)
+.++++++ +.++|||+..+++
T Consensus 331 ~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 331 RREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhhc
Confidence 66666554 5789999998875
No 45
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=5.1e-32 Score=284.54 Aligned_cols=366 Identities=21% Similarity=0.242 Sum_probs=246.6
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|++.++|. .||.+.++.+|+++|+++||+|+++++............ .....
T Consensus 1 kIl~i~~~~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~----------------------~~~~~ 56 (375)
T cd03821 1 KILHVIPSFDPK--YGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALN----------------------GVPVK 56 (375)
T ss_pred CeEEEcCCCCcc--cCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhcc----------------------Cceee
Confidence 799999988765 899999999999999999999999998643222110000 00000
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEeccc-ccchHHHH-
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDW-HTSLIPCY- 243 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~-~~~~~~~~- 243 (609)
......... . ....+ .+........... . .+||+| |+|+. ........
T Consensus 57 ~~~~~~~~~----------~----------~~~~~-~~~~~~~~~~~~~-~-------~~~dii-~~~~~~~~~~~~~~~ 106 (375)
T cd03821 57 LFSINVAYG----------L----------NLARY-LFPPSLLAWLRLN-I-------READIV-HVHGLWSYPSLAAAR 106 (375)
T ss_pred ecccchhhh----------h----------hhhhh-ccChhHHHHHHHh-C-------CCCCEE-EEecccchHHHHHHH
Confidence 000000000 0 00000 0000011111111 1 158999 88873 32222222
Q ss_pred HHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCH
Q 007300 244 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 323 (609)
Q Consensus 244 l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 323 (609)
+... .++|++++.|+......... ..+.. . .......+..+..++.++++|.
T Consensus 107 ~~~~-------~~~~~i~~~~~~~~~~~~~~---------~~~~~----------~--~~~~~~~~~~~~~~~~i~~~s~ 158 (375)
T cd03821 107 AARK-------YGIPYVVSPHGMLDPWALPH---------KALKK----------R--LAWFLFERRLLQAAAAVHATSE 158 (375)
T ss_pred HHHH-------hCCCEEEEcccccccccccc---------chhhh----------H--HHHHHHHHHHHhcCCEEEECCH
Confidence 2211 48999999996532111000 00000 0 0012234556778999999998
Q ss_pred HHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEE
Q 007300 324 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 403 (609)
Q Consensus 324 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i 403 (609)
......... + . ..++.+||||+|...+.+... ... ++..+.+ .+.++|
T Consensus 159 ~~~~~~~~~---~-~------~~~~~vi~~~~~~~~~~~~~~-------------------~~~-~~~~~~~--~~~~~i 206 (375)
T cd03821 159 QEAAEIRRL---G-L------KAPIAVIPNGVDIPPFAALPS-------------------RGR-RRKFPIL--PDKRII 206 (375)
T ss_pred HHHHHHHhh---C-C------cccEEEcCCCcChhccCcchh-------------------hhh-hhhccCC--CCCcEE
Confidence 877776641 1 1 228999999999988866431 111 4445544 355899
Q ss_pred EEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeecChHHHHHHHHhCcEEE
Q 007300 404 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 404 ~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
+|+||+.+.||++.+++|+.++.+ ++++|+++|.+.......++.+..++ ..++.+.+..+.+++..+|+.||+++
T Consensus 207 ~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v 286 (375)
T cd03821 207 LFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFV 286 (375)
T ss_pred EEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEE
Confidence 999999999999999999999977 69999999998766666666654443 35677777778788888999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHH
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 559 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 559 (609)
+||..|+||++++|||++|+|||+++.+|..+++.+ .+|++. +.+.++++++|.+++++ ++.+.++
T Consensus 287 ~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~i~~l~~~--~~~~~~~ 352 (375)
T cd03821 287 LPSHSENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGWVV-----------DDDVDALAAALRRALEL--PQRLKAM 352 (375)
T ss_pred eccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceEEe-----------CCChHHHHHHHHHHHhC--HHHHHHH
Confidence 999999999999999999999999999999999998 788874 55669999999999998 4455555
Q ss_pred HHH---HHHhhCCchHHHHHHHH
Q 007300 560 MKN---GMAQDLSWKGPAKKWEE 579 (609)
Q Consensus 560 ~~~---~~~~~fs~~~~a~~~~~ 579 (609)
+++ .+.++|||+.++++|++
T Consensus 353 ~~~~~~~~~~~~s~~~~~~~~~~ 375 (375)
T cd03821 353 GENGRALVEERFSWTAIAQQLLE 375 (375)
T ss_pred HHHHHHHHHHhcCHHHHHHHhhC
Confidence 544 45899999999999863
No 46
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1.4e-31 Score=281.44 Aligned_cols=365 Identities=23% Similarity=0.297 Sum_probs=252.5
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++++..|+|. .||.+..+..++++|.++||+|+++++........... .++...
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~----------------------~~~~~~ 56 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEV----------------------VVVRPF 56 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccccc----------------------cccccc
Confidence 799999998886 89999999999999999999999999875433221000 000000
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccc-cchHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWH-TSLIPCYL 244 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~-~~~~~~~l 244 (609)
.+..... .+ ....+ .+.......++.. +||+| |+|... .......+
T Consensus 57 ~~~~~~~-~~--------------------~~~~~-~~~~~~~~~~~~~----------~~Div-~~~~~~~~~~~~~~~ 103 (374)
T cd03817 57 RVPTFKY-PD--------------------FRLPL-PIPRALIIILKEL----------GPDIV-HTHTPFSLGLLGLRV 103 (374)
T ss_pred ccccchh-hh--------------------hhccc-cHHHHHHHHHhhc----------CCCEE-EECCchhhhhHHHHH
Confidence 0000000 00 00000 0111122222222 59999 887532 22233333
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh-HHHHHHhhcCCEEEeeCH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI-NWMKAGILESDMVLTVSP 323 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~~ad~vi~vS~ 323 (609)
... .++|+++++|+.... +. ......... ...... .+++..+..+|.++++|+
T Consensus 104 ~~~-------~~~~~i~~~~~~~~~--~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 104 ARK-------LGIPVVATYHTMYED--YT----HYVPLGRLL-------------ARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HHH-------cCCCEEEEecCCHHH--HH----HHHhcccch-------------hHHHHHHHHHHHHhhhCCEEEeccH
Confidence 332 589999999975320 00 000000000 000112 456778889999999999
Q ss_pred HHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEE
Q 007300 324 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 403 (609)
Q Consensus 324 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i 403 (609)
..++.+.+ ++.. .++.+++||+|...+.+.. ....++.+++.. +.++|
T Consensus 158 ~~~~~~~~---~~~~-------~~~~vi~~~~~~~~~~~~~--------------------~~~~~~~~~~~~--~~~~i 205 (374)
T cd03817 158 KIADLLRE---YGVK-------RPIEVIPTGIDLDRFEPVD--------------------GDDERRKLGIPE--DEPVL 205 (374)
T ss_pred HHHHHHHh---cCCC-------CceEEcCCccchhccCccc--------------------hhHHHHhcCCCC--CCeEE
Confidence 99998875 3332 1689999999998876643 122245555543 45899
Q ss_pred EEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeecChHHHHHHHHhCcEEE
Q 007300 404 GFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 404 ~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
+|+|++.+.||++.+++++.++.+ ++++|+++|.|+ ..+.++++..++ .+++.+.+..+.+++..+++.||+++
T Consensus 206 ~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l 283 (374)
T cd03817 206 LYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDGP--EREELEELARELGLADRVIFTGFVPREELPDYYKAADLFV 283 (374)
T ss_pred EEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEE
Confidence 999999999999999999999876 689999999987 555666665443 35677777778888889999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHH
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 559 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 559 (609)
+||..|++|++++|||++|+|||+++.|+..+++.++.+|+++ ++.|. +++++|.+++++ ++.+++|
T Consensus 284 ~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~~~----------~~~~~-~~~~~i~~l~~~--~~~~~~~ 350 (374)
T cd03817 284 FASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGFLF----------PPGDE-ALAEALLRLLQD--PELRRRL 350 (374)
T ss_pred ecccccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeEEe----------CCCCH-HHHHHHHHHHhC--hHHHHHH
Confidence 9999999999999999999999999999999999999999987 77777 999999999998 5555666
Q ss_pred HHHHH--HhhCCchHHHHHHHHHHHH
Q 007300 560 MKNGM--AQDLSWKGPAKKWEETLLN 583 (609)
Q Consensus 560 ~~~~~--~~~fs~~~~a~~~~~~~~~ 583 (609)
++++. .++++ .+++++++|++
T Consensus 351 ~~~~~~~~~~~~---~~~~~~~~~~~ 373 (374)
T cd03817 351 SKNAEESAEKFS---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhc
Confidence 66653 33444 67778877765
No 47
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=6.9e-32 Score=284.59 Aligned_cols=347 Identities=15% Similarity=0.112 Sum_probs=235.4
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||+++++.+ + .||.+.++.+++++|.+.||+|+++++..... .... .....|+.++
T Consensus 1 kIl~~~~~~-~---~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~--~~~~------------------~~~~~~~~~~ 56 (358)
T cd03812 1 KILHIVGTM-N---RGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG--DYDD------------------EIEKLGGKIY 56 (358)
T ss_pred CEEEEeCCC-C---CccHHHHHHHHHHhcCccceEEEEEEeCCCCc--chHH------------------HHHHcCCeEE
Confidence 799999875 3 69999999999999999999999999874321 0000 0011133333
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+.... ... ..+.....+.++.. +||+| |+|......++..+.
T Consensus 57 ~~~~~~-----------------------~~~---~~~~~~~~~~~~~~----------~~Dvv-~~~~~~~~~~~~~~~ 99 (358)
T cd03812 57 YIPARK-----------------------KNP---LKYFKKLYKLIKKN----------KYDIV-HVHGSSASGFILLAA 99 (358)
T ss_pred EecCCC-----------------------ccH---HHHHHHHHHHHhcC----------CCCEE-EEeCcchhHHHHHHH
Confidence 221100 000 11122222233322 59999 998776555555444
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
... ....++++.|+..+...... . . .....+.+.....+|.++++|+..
T Consensus 100 ~~~------~~~~~v~~~~~~~~~~~~~~-------------~----------~--~~~~~~~~~~~~~~~~~i~~s~~~ 148 (358)
T cd03812 100 KKA------GVKVRIAHSHNTSDSHDKKK-------------K----------I--LKYKVLRKLINRLATDYLACSEEA 148 (358)
T ss_pred hhC------CCCeEEEEeccccccccccc-------------h----------h--hHHHHHHHHHHhcCCEEEEcCHHH
Confidence 331 23345777886443211100 0 0 000123455677899999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+.+. .. +.++.+||||+|.+.+.+.... ++. +...+.. .+.++|+|
T Consensus 149 ~~~~~~~----~~------~~~~~vi~ngvd~~~~~~~~~~------------------~~~-~~~~~~~--~~~~~i~~ 197 (358)
T cd03812 149 GKWLFGK----VK------NKKFKVIPNGIDLEKFIFNEEI------------------RKK-RRELGIL--EDKFVIGH 197 (358)
T ss_pred HHHHHhC----CC------cccEEEEeccCcHHHcCCCchh------------------hhH-HHHcCCC--CCCEEEEE
Confidence 9988752 22 2389999999999877654321 111 3444443 35589999
Q ss_pred EeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCcEEEec
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILIP 481 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDv~v~p 481 (609)
+||+.++||++.+++|+..+.+ ++++|+|+|+|+ ..+.++++..+++ +++.+.+. .+++..+|+.||++++|
T Consensus 198 vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~p 273 (358)
T cd03812 198 VGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE--LEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFP 273 (358)
T ss_pred EeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc--hHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEec
Confidence 9999999999999999999976 689999999988 5556666655443 45666554 45566799999999999
Q ss_pred CCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007300 482 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK 561 (609)
Q Consensus 482 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~ 561 (609)
|++|++|++++|||++|+|||+|+.||..|++.++ .|++. .++++++++++|.+++++ ++..+.+..
T Consensus 274 s~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~-~~~~~----------~~~~~~~~a~~i~~l~~~--~~~~~~~~~ 340 (358)
T cd03812 274 SLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDL-VKFLS----------LDESPEIWAEEILKLKSE--DRRERSSES 340 (358)
T ss_pred ccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccC-ccEEe----------CCCCHHHHHHHHHHHHhC--cchhhhhhh
Confidence 99999999999999999999999999999999994 55544 677899999999999998 555555655
Q ss_pred HHHHhhCCchH
Q 007300 562 NGMAQDLSWKG 572 (609)
Q Consensus 562 ~~~~~~fs~~~ 572 (609)
.+..+..+++.
T Consensus 341 ~~~~~~~~~~~ 351 (358)
T cd03812 341 IKKKGLDADDE 351 (358)
T ss_pred hhhccchhhhh
Confidence 55444444443
No 48
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=3e-31 Score=276.80 Aligned_cols=367 Identities=27% Similarity=0.390 Sum_probs=262.1
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++++..++|. .||.+.++..|+++|.+.||+|.++++........... ......
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~----------------------~~~~~~ 56 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV----------------------GGIVVV 56 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee----------------------cCccee
Confidence 799999998775 79999999999999999999999999874432221000 000000
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.. ... . ..+ .......+.......++.. +||+| |+|.+..........
T Consensus 57 ~~--~~~-~--------~~~----------~~~~~~~~~~~~~~~~~~~----------~~Dii-~~~~~~~~~~~~~~~ 104 (374)
T cd03801 57 RP--PPL-L--------RVR----------RLLLLLLLALRLRRLLRRE----------RFDVV-HAHDWLALLAAALAA 104 (374)
T ss_pred cC--Ccc-c--------ccc----------hhHHHHHHHHHHHHHhhhc----------CCcEE-EEechhHHHHHHHHH
Confidence 00 000 0 000 0001111222222223222 59999 888777665554333
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
.. .++|+++++|+..+...... .. ........+.+..+..+|.++++|+..
T Consensus 105 ~~-------~~~~~i~~~h~~~~~~~~~~---------~~-------------~~~~~~~~~~~~~~~~~d~~i~~s~~~ 155 (374)
T cd03801 105 RL-------LGIPLVLTVHGLEFGRPGNE---------LG-------------LLLKLARALERRALRRADRIIAVSEAT 155 (374)
T ss_pred Hh-------cCCcEEEEeccchhhccccc---------hh-------------HHHHHHHHHHHHHHHhCCEEEEecHHH
Confidence 22 68999999998655221110 00 001123345567788999999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+.+. ++.+.+ ++.++|||+|...+.+.. ...+.....+ .+.+.|+|
T Consensus 156 ~~~~~~~--~~~~~~------~~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~--~~~~~i~~ 204 (374)
T cd03801 156 REELREL--GGVPPE------KITVIPNGVDTERFRPAP---------------------RAARRRLGIP--EDEPVILF 204 (374)
T ss_pred HHHHHhc--CCCCCC------cEEEecCcccccccCccc---------------------hHHHhhcCCc--CCCeEEEE
Confidence 9999862 333222 899999999988776531 1112222222 34579999
Q ss_pred EeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHh--CCCceEEEeecChHHHHHHHHhCcEEEec
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEIL--YPEKARGVAKFNIPLAHMIIAGADFILIP 481 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~--~~~~v~~~~~~~~~~~~~~l~~aDv~v~p 481 (609)
+|++...||++.+++++..+.+ ++++|+++|.+. ....++++..+ .+.++.+.+..+.+++..+++.||++++|
T Consensus 205 ~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~ 282 (374)
T cd03801 205 VGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDGP--LREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLP 282 (374)
T ss_pred ecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCcH--HHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEec
Confidence 9999999999999999999876 589999999776 55555555433 34567777777878888999999999999
Q ss_pred CCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007300 482 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK 561 (609)
Q Consensus 482 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~ 561 (609)
+..|++|++++|||++|+|||+++.++..+++.++.+|+++ ++.|+++++++|.+++.+ ++.+.++++
T Consensus 283 ~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g~~~----------~~~~~~~l~~~i~~~~~~--~~~~~~~~~ 350 (374)
T cd03801 283 SLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETGLLV----------PPGDPEALAEAILRLLDD--PELRRRLGE 350 (374)
T ss_pred chhccccchHHHHHHcCCcEEEeCCCChhHHhcCCcceEEe----------CCCCHHHHHHHHHHHHcC--hHHHHHHHH
Confidence 99999999999999999999999999999999999999987 999999999999999987 556666666
Q ss_pred HH---HHhhCCchHHHHHHHHHHH
Q 007300 562 NG---MAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 562 ~~---~~~~fs~~~~a~~~~~~~~ 582 (609)
++ ..+.|||+.+++++.++|+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 351 AARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhC
Confidence 54 5899999999999999873
No 49
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=7e-32 Score=289.18 Aligned_cols=227 Identities=12% Similarity=0.171 Sum_probs=176.5
Q ss_pred cCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHH--
Q 007300 314 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE-- 391 (609)
Q Consensus 314 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 391 (609)
.+| ++++|...++.+.+ .++++++ ++.+||||+|...|.|..+. ....+..
T Consensus 339 ~sd-~v~~s~~v~~~l~~--~lgip~~------KI~VIyNGVD~~rf~p~~~~------------------~~~~r~~~~ 391 (578)
T PRK15490 339 GVD-FMSNNHCVTRHYAD--WLKLEAK------HFQVVYNGVLPPSTEPSSEV------------------PHKIWQQFT 391 (578)
T ss_pred cch-hhhccHHHHHHHHH--HhCCCHH------HEEEEeCCcchhhcCccchh------------------hHHHHHHhh
Confidence 445 66788888888765 2466666 99999999999888775321 1112222
Q ss_pred hCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHH
Q 007300 392 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPL 467 (609)
Q Consensus 392 ~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~ 467 (609)
.+++ ++.++|+++||+.++||.+.+++++.++.+ ++++|+|+|+|+ .++.++++..+++ ++|.+.+. .++
T Consensus 392 ~~l~--~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~--~~eeLk~la~elgL~d~V~FlG~--~~D 465 (578)
T PRK15490 392 QKTQ--DADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGD--LRAEAQKRAEQLGILERILFVGA--SRD 465 (578)
T ss_pred hccC--CCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCch--hHHHHHHHHHHcCCCCcEEECCC--hhh
Confidence 2333 244799999999999999999999988755 689999999997 6677777777654 45666554 345
Q ss_pred HHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHH-
Q 007300 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR- 546 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~- 546 (609)
+..+|+.+|++|+||++|+||++++|||++|+|||+|+.||..|+|.++.+|+++ ++.|++++++++..
T Consensus 466 v~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~LV----------p~~D~~aLa~ai~lA 535 (578)
T PRK15490 466 VGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGFIL----------DDAQTVNLDQACRYA 535 (578)
T ss_pred HHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEEEE----------CCCChhhHHHHHHHH
Confidence 6679999999999999999999999999999999999999999999999999987 89998888887743
Q ss_pred --HHHhhC-HHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 007300 547 --ALATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETLLN 583 (609)
Q Consensus 547 --ll~~~~-~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~ 583 (609)
+.+... ...+.+.+++.+.++|||+.++++|+++|..
T Consensus 536 ~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 536 EKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 333211 1233444555578999999999999999964
No 50
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=3.4e-31 Score=278.83 Aligned_cols=349 Identities=21% Similarity=0.248 Sum_probs=239.9
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||+||+++ +|. .||.++++.+|+++|+++||+|.+++......... ..... .+....
T Consensus 1 kI~~v~~~-~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~--~~~~~------------------~~~~~~ 57 (366)
T cd03822 1 RIALVSPY-PPR--KCGIATFTTDLVNALSARGPDVLVVSVAALYPSLL--YGGEQ------------------EVVRVI 57 (366)
T ss_pred CeEEecCC-CCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecccCccc--CCCcc------------------cceeee
Confidence 79999886 454 79999999999999999999999999763311110 00000 000000
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHH--
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCY-- 243 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~-- 243 (609)
.. + +. .....+.+.++.. +||+| |+|.|.....+..
T Consensus 58 ~~-----------------~----------~~----~~~~~~~~~~~~~----------~~dii-~~~~~~~~~~~~~~~ 95 (366)
T cd03822 58 VL-----------------D----------NP----LDYRRAARAIRLS----------GPDVV-VIQHEYGIFGGEAGL 95 (366)
T ss_pred ec-----------------C----------Cc----hhHHHHHHHHhhc----------CCCEE-EEeeccccccchhhH
Confidence 00 0 00 0111122233332 59999 8877544322221
Q ss_pred -HHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeC
Q 007300 244 -LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 322 (609)
Q Consensus 244 -l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS 322 (609)
+....+ ..++|+|+++|+..... . ......+++..+..+|.++++|
T Consensus 96 ~~~~~~~----~~~~~~i~~~h~~~~~~------------~-----------------~~~~~~~~~~~~~~~d~ii~~s 142 (366)
T cd03822 96 YLLLLLR----GLGIPVVVTLHTVLLHE------------P-----------------RPGDRALLRLLLRRADAVIVMS 142 (366)
T ss_pred HHHHHHh----hcCCCEEEEEecCCccc------------c-----------------chhhhHHHHHHHhcCCEEEEee
Confidence 221110 15899999999751100 0 0012345577788999999997
Q ss_pred HHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcE
Q 007300 323 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPV 402 (609)
Q Consensus 323 ~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~ 402 (609)
....+.+... .+ ..++.+|+||+|...+.+... . +....+ .+.++
T Consensus 143 ~~~~~~~~~~--~~--------~~~~~~i~~~~~~~~~~~~~~---------------------~--~~~~~~--~~~~~ 187 (366)
T cd03822 143 SELLRALLLR--AY--------PEKIAVIPHGVPDPPAEPPES---------------------L--KALGGL--DGRPV 187 (366)
T ss_pred HHHHHHHHhh--cC--------CCcEEEeCCCCcCcccCCchh---------------------h--HhhcCC--CCCeE
Confidence 4444433321 11 128999999999776654310 0 222222 35589
Q ss_pred EEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHH-------HHHHHHhCCCceEEEee-cChHHHHHHH
Q 007300 403 IGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQ-------LEQLEILYPEKARGVAK-FNIPLAHMII 472 (609)
Q Consensus 403 i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~-------l~~l~~~~~~~v~~~~~-~~~~~~~~~l 472 (609)
|+|+|++.+.||++.+++|+.++.+ ++++|+|+|++.+..... ++++ ....++.+.+. .+.+++..+|
T Consensus 188 i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~--~~~~~v~~~~~~~~~~~~~~~~ 265 (366)
T cd03822 188 LLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERL--GLADRVIFINRYLPDEELPELF 265 (366)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhc--CCCCcEEEecCcCCHHHHHHHH
Confidence 9999999999999999999999876 589999999986433222 2232 23356888877 5778888899
Q ss_pred HhCcEEEecCCCC--CCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 473 AGADFILIPSRFE--PCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 473 ~~aDv~v~pS~~E--~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
+.||++++||.+| ++|++++|||++|+|||+++.|+ .+.+.++.+|+++ +++|+++++++|.+++++
T Consensus 266 ~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~~~~g~~~----------~~~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 266 SAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLDGGTGLLV----------PPGDPAALAEAIRRLLAD 334 (366)
T ss_pred hhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeeeCCCcEEE----------cCCCHHHHHHHHHHHHcC
Confidence 9999999999999 99999999999999999999999 7888888899987 899999999999999987
Q ss_pred hCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHH
Q 007300 551 YGTQALAEMMKNGM--AQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 551 ~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~~~ 582 (609)
++.+.++++++. .+.|||+.++++|.++|+
T Consensus 335 --~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 335 --PELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred --hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 556666666552 344999999999999873
No 51
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=1e-31 Score=282.59 Aligned_cols=360 Identities=19% Similarity=0.200 Sum_probs=251.7
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++++..+.|. ..||+++++.+|+++|+++||+|+++++.............. ...
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~---------------------~~~- 57 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAA---------------------LRL- 57 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhc---------------------ccc-
Confidence 689999888772 489999999999999999999999999875432221100000 000
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
..... +.....++.............. +||+| |+|.+..... +
T Consensus 58 -~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~----------~~Dii-~~~~~~~~~~----~ 100 (365)
T cd03809 58 -LLRLP---------------------RRLLWGLLFLLRAGDRLLLLLL----------GLDLL-HSPHNTAPLL----R 100 (365)
T ss_pred -ccccc---------------------cccccchhhHHHHHHHHHhhhc----------CCCee-eecccccCcc----c
Confidence 00000 0000011111111111122221 59999 8887665544 1
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
..++|+++++|+..+.... ..+.. ........+++..+..+|.++++|+..
T Consensus 101 --------~~~~~~i~~~hd~~~~~~~-----------~~~~~----------~~~~~~~~~~~~~~~~~d~~i~~s~~~ 151 (365)
T cd03809 101 --------LRGVPVVVTIHDLIPLRFP-----------EYFSP----------GFRRYFRRLLRRALRRADAIITVSEAT 151 (365)
T ss_pred --------CCCCCEEEEeccchhhhCc-----------ccCCH----------HHHHHHHHHHHHHHHHcCEEEEccHHH
Confidence 1699999999986542110 00000 001123355677889999999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
++.+.+. ++.+.+ ++.+|+||+|...+.+... .. +...... .+.++|+|
T Consensus 152 ~~~~~~~--~~~~~~------~~~vi~~~~~~~~~~~~~~--------------------~~-~~~~~~~--~~~~~i~~ 200 (365)
T cd03809 152 KRDLLRY--LGVPPD------KIVVIPLGVDPRFRPPPAE--------------------AE-VLRALYL--LPRPYFLY 200 (365)
T ss_pred HHHHHHH--hCcCHH------HEEeeccccCccccCCCch--------------------HH-HHHHhcC--CCCCeEEE
Confidence 9999862 333333 8999999999888765432 11 2222222 34579999
Q ss_pred EeccccccCHHHHHHHHhhcccC--CeEEEEEeCCChhhHHHHHHHH-HhCCCceEEEeecChHHHHHHHHhCcEEEecC
Q 007300 406 IGRLEEQKGSDILAAAIPHFIKE--NVQIIVLGTGKKPMEKQLEQLE-ILYPEKARGVAKFNIPLAHMIIAGADFILIPS 482 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~-~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS 482 (609)
+|++.+.||++.+++++..+.+. +++|+++|.+..........+. .....++.+.+..+.+++..+++.||++++||
T Consensus 201 ~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps 280 (365)
T cd03809 201 VGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPS 280 (365)
T ss_pred eCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccc
Confidence 99999999999999999999774 5999999987644444333321 22345688877778888889999999999999
Q ss_pred CCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 007300 483 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 562 (609)
Q Consensus 483 ~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~ 562 (609)
.+|++|++++|||++|+|||+++.|++.|++.+ +|+++ ++.|+++++++|.+++.+ .+.+.+++++
T Consensus 281 ~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~~--~~~~~----------~~~~~~~~~~~i~~l~~~--~~~~~~~~~~ 346 (365)
T cd03809 281 LYEGFGLPVLEAMACGTPVIASNISSLPEVAGD--AALYF----------DPLDPEALAAAIERLLED--PALREELRER 346 (365)
T ss_pred hhccCCCCHHHHhcCCCcEEecCCCCccceecC--ceeee----------CCCCHHHHHHHHHHHhcC--HHHHHHHHHH
Confidence 999999999999999999999999999999864 57765 889999999999999887 6666666666
Q ss_pred H--HHhhCCchHHHHHHHH
Q 007300 563 G--MAQDLSWKGPAKKWEE 579 (609)
Q Consensus 563 ~--~~~~fs~~~~a~~~~~ 579 (609)
+ ..++|||+.+++++++
T Consensus 347 ~~~~~~~~sw~~~~~~~~~ 365 (365)
T cd03809 347 GLARAKRFSWEKTARRTLD 365 (365)
T ss_pred HHHHHHhCCHHHHHHHHhC
Confidence 5 4688999999998863
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=6.5e-31 Score=283.76 Aligned_cols=372 Identities=15% Similarity=0.088 Sum_probs=238.8
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCee
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (609)
..+|++++.. .+|....+..++++|+++||+|+|++.......+. . ....||.
T Consensus 3 ~~~~~~~~~~------~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~----------------~-----~~~~~v~ 55 (415)
T cd03816 3 RKRVCVLVLG------DIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDE----------------I-----LSNPNIT 55 (415)
T ss_pred ccEEEEEEec------ccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHH----------------H-----hcCCCEE
Confidence 3577888763 35667778899999999999999999763211100 0 1123566
Q ss_pred EEEEeCcc-hhhhhcCCCCCeeccCCCCCCCcchHHHHH-HHHHHHHHhhhhh-ccCCCCCCCCCCceEEEeccccc---
Q 007300 164 RVFVDHPW-FLAKVWGKTQSKIYGPRTGEDYQDNQLRFS-LLCQAALEAPRIL-NLNSNKYFSGPYDVVFVANDWHT--- 237 (609)
Q Consensus 164 ~~~v~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~-~~~~~~~~~~~pDvV~h~h~~~~--- 237 (609)
++.+..+. ... ......++. .........++.+ .. .+||+| |+|....
T Consensus 56 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~Dvi-~~~~~~~~~~ 109 (415)
T cd03816 56 IHPLPPPPQRLN------------------KLPFLLFAPLKVLWQFFSLLWLLYKL-------RPADYI-LIQNPPSIPT 109 (415)
T ss_pred EEECCCCccccc------------------cchHHHHHHHHHHHHHHHHHHHHHhc-------CCCCEE-EEeCCCCchH
Confidence 66654321 000 001111111 1111112221111 11 159999 8875332
Q ss_pred chHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCE
Q 007300 238 SLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDM 317 (609)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~ 317 (609)
..++.+++.. .++|+|+++|+..+. .. ..+... ..++......+++..++.+|.
T Consensus 110 ~~~a~~~~~~-------~~~~~V~~~h~~~~~-~~------~~~~~~------------~~~~~~~~~~~e~~~~~~ad~ 163 (415)
T cd03816 110 LLIAWLYCLL-------RRTKLIIDWHNYGYT-IL------ALKLGE------------NHPLVRLAKWYEKLFGRLADY 163 (415)
T ss_pred HHHHHHHHHH-------hCCeEEEEcCCchHH-HH------hcccCC------------CCHHHHHHHHHHHHHhhcCCE
Confidence 2223333333 589999999975321 00 000000 000001122334566788999
Q ss_pred EEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHH-------
Q 007300 318 VLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA------- 390 (609)
Q Consensus 318 vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 390 (609)
|+++|+.+++.+.+ ++.+.+ ++.+||||. ...|.|.... .....+.+
T Consensus 164 ii~vS~~~~~~l~~---~~~~~~------ki~vI~Ng~-~~~f~p~~~~----------------~~~~~~~~~~~~~~~ 217 (415)
T cd03816 164 NLCVTKAMKEDLQQ---FNNWKI------RATVLYDRP-PEQFRPLPLE----------------EKHELFLKLAKTFLT 217 (415)
T ss_pred eeecCHHHHHHHHh---hhccCC------CeeecCCCC-HHHceeCcHH----------------HHHHHHHhccccccc
Confidence 99999999999985 455444 999999994 4556554310 00111111
Q ss_pred ------HhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--------CCeEEEEEeCCChhhHHHHHHHHHhCC-C
Q 007300 391 ------EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--------ENVQIIVLGTGKKPMEKQLEQLEILYP-E 455 (609)
Q Consensus 391 ------~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--------~~~~lvivG~g~~~~~~~l~~l~~~~~-~ 455 (609)
..++.. ++..+++++||+.+.||++.|++|+..+.+ ++++|+|+|+|+ .++.++++..+++ .
T Consensus 218 ~~~~~~~~~~~~-~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~--~~~~l~~~~~~~~l~ 294 (415)
T cd03816 218 RELRIGAVQLSE-ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGP--LKEKYLERIKELKLK 294 (415)
T ss_pred cccccccceecC-CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCc--cHHHHHHHHHHcCCC
Confidence 112222 234678899999999999999999999853 479999999998 5677777776655 2
Q ss_pred ceEEEee-cChHHHHHHHHhCcEEEecCC---CCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEeccccccccc
Q 007300 456 KARGVAK-FNIPLAHMIIAGADFILIPSR---FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEA 531 (609)
Q Consensus 456 ~v~~~~~-~~~~~~~~~l~~aDv~v~pS~---~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~ 531 (609)
++.++.+ .+.+++..+|+.||++++|+. .|++|++++|||+||+|||+++.||..|+++++.+|+++
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv--------- 365 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVF--------- 365 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEE---------
Confidence 4666654 477888899999999997533 478999999999999999999999999999999999975
Q ss_pred CCCCCHHHHHHHHHHHHHhh-CHHHHHHHHHHHH-HhhCCchHHHH
Q 007300 532 VDPVDVAAVSTTVRRALATY-GTQALAEMMKNGM-AQDLSWKGPAK 575 (609)
Q Consensus 532 v~~~d~~~la~~I~~ll~~~-~~~~~~~~~~~~~-~~~fs~~~~a~ 575 (609)
+|+++++++|.+++++. .++.+.+|++++. ...++|...-+
T Consensus 366 ---~d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 408 (415)
T cd03816 366 ---GDSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESELRWDENWD 408 (415)
T ss_pred ---CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 38999999999999862 1566778877764 23455554433
No 53
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.5e-31 Score=284.98 Aligned_cols=230 Identities=14% Similarity=0.107 Sum_probs=180.8
Q ss_pred HHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHH
Q 007300 308 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEA 387 (609)
Q Consensus 308 ~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (609)
++.....+|.|+++|++.++.+.+. ++.+ + ++.+|+||+|...+.....
T Consensus 214 ~~~~~~~ad~ii~nS~~t~~~l~~~--~~~~-~------~i~vvyp~vd~~~~~~~~~---------------------- 262 (463)
T PLN02949 214 YGLVGRCAHLAMVNSSWTKSHIEAL--WRIP-E------RIKRVYPPCDTSGLQALPL---------------------- 262 (463)
T ss_pred HHHHcCCCCEEEECCHHHHHHHHHH--cCCC-C------CeEEEcCCCCHHHcccCCc----------------------
Confidence 3445578999999999999999762 2221 2 7889999998765532110
Q ss_pred HHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCC----hhhHHHHHHHHHhCC--C
Q 007300 388 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----KPMEKQLEQLEILYP--E 455 (609)
Q Consensus 388 ~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~----~~~~~~l~~l~~~~~--~ 455 (609)
....+.+.++++||++++||++.+++|+.++.+ ++++|+|+|++. ..+.+.++++..+++ +
T Consensus 263 -------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~ 335 (463)
T PLN02949 263 -------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDG 335 (463)
T ss_pred -------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCC
Confidence 011234789999999999999999999998643 579999999874 234567777777653 5
Q ss_pred ceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcc-ccccc---CcceeEeccccccccc
Q 007300 456 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV-DTVEE---GFTGFQMGSFSVDCEA 531 (609)
Q Consensus 456 ~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~-e~i~~---~~~G~l~~~~~~~~~~ 531 (609)
++.+.+..+.+++..+|+.||++++||..|+||++++|||++|+|||+++.||.. |++.+ +.+|+++
T Consensus 336 ~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~--------- 406 (463)
T PLN02949 336 DVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA--------- 406 (463)
T ss_pred cEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC---------
Confidence 6888887788888899999999999999999999999999999999999999975 67765 6789964
Q ss_pred CCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHHcC
Q 007300 532 VDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEVAG 588 (609)
Q Consensus 532 v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~~~~l~~~~ 588 (609)
.|+++++++|.+++++. ++.+.+|++++. .++|||+.++++|++.|.++++.+
T Consensus 407 ---~~~~~la~ai~~ll~~~-~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l~~~~ 461 (463)
T PLN02949 407 ---TTVEEYADAILEVLRMR-ETERLEIAAAARKRANRFSEQRFNEDFKDAIRPILNSA 461 (463)
T ss_pred ---CCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhh
Confidence 49999999999999851 344445554442 367999999999999999988654
No 54
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=1.4e-30 Score=272.80 Aligned_cols=372 Identities=23% Similarity=0.306 Sum_probs=258.9
Q ss_pred EEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEEE
Q 007300 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVF 166 (609)
Q Consensus 87 Il~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 166 (609)
|+++++.++| ...||.+.++..++.+|.+.||+|+++++............... . ....
T Consensus 1 iLii~~~~p~-~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~-----------------~---~~~~ 59 (377)
T cd03798 1 ILVISSLYPP-PNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRL-----------------V---GVER 59 (377)
T ss_pred CeEeccCCCC-CCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhccccc-----------------c---cccc
Confidence 6788888655 23599999999999999999999999998643322210000000 0 0000
Q ss_pred EeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEeccccc-chHHHHHH
Q 007300 167 VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHT-SLIPCYLK 245 (609)
Q Consensus 167 v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~-~~~~~~l~ 245 (609)
...... ... ..........+.......++.. . .+||+| |+|.... ..+...+.
T Consensus 60 ~~~~~~-----------~~~------~~~~~~~~~~~~~~~~~~l~~~-~-------~~~dii-~~~~~~~~~~~~~~~~ 113 (377)
T cd03798 60 LPVLLP-----------VVP------LLKGPLLYLLAARALLKLLKLK-R-------FRPDLI-HAHFAYPDGFAAALLK 113 (377)
T ss_pred cccCcc-----------hhh------ccccchhHHHHHHHHHHHHhcc-c-------CCCCEE-EEeccchHHHHHHHHH
Confidence 000000 000 0011112223333344444311 1 159999 7774322 33333333
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
.. .++|+++++|+..+..... .......++..+..+|.++++|+..
T Consensus 114 ~~-------~~~~~i~~~h~~~~~~~~~---------------------------~~~~~~~~~~~~~~~d~ii~~s~~~ 159 (377)
T cd03798 114 RK-------LGIPLVVTLHGSDVNLLPR---------------------------KRLLRALLRRALRRADAVIAVSEAL 159 (377)
T ss_pred Hh-------cCCCEEEEeecchhcccCc---------------------------hhhHHHHHHHHHhcCCeEEeCCHHH
Confidence 32 4789999999755421100 0013456677889999999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
++.+.+ .+.. ..++.+++||+|...+.+.... .. ...+.. .+.+.+++
T Consensus 160 ~~~~~~---~~~~------~~~~~~i~~~~~~~~~~~~~~~------------------~~---~~~~~~--~~~~~i~~ 207 (377)
T cd03798 160 ADELKA---LGID------PEKVTVIPNGVDTERFSPADRA------------------EA---RKLGLP--EDKKVILF 207 (377)
T ss_pred HHHHHH---hcCC------CCceEEcCCCcCcccCCCcchH------------------HH---HhccCC--CCceEEEE
Confidence 999986 2222 2389999999999888765321 00 222222 35589999
Q ss_pred EeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEeecChHHHHHHHHhCcEEEec
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVAKFNIPLAHMIIAGADFILIP 481 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~--~~~v~~~~~~~~~~~~~~l~~aDv~v~p 481 (609)
+|++.+.||++.+++++..+.+ ++++|+++|.+. ..+.++++..+. ..++.+.+..+.+++..+++.||++++|
T Consensus 208 ~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~--~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~ 285 (377)
T cd03798 208 VGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP--LREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLP 285 (377)
T ss_pred eccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc--chHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecc
Confidence 9999999999999999999976 589999999987 344555554433 3467777777888888999999999999
Q ss_pred CCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007300 482 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK 561 (609)
Q Consensus 482 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~ 561 (609)
|..|++|++++|||++|+|||+++.++..+++.++.+|+++ ++.|+++++++|.+++++... .+.+.++
T Consensus 286 ~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~----------~~~~~~~l~~~i~~~~~~~~~-~~~~~~~ 354 (377)
T cd03798 286 SLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLV----------PPGDPEALAEAILRLLADPWL-RLGRAAR 354 (377)
T ss_pred hhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEE----------CCCCHHHHHHHHHHHhcCcHH-HHhHHHH
Confidence 99999999999999999999999999999999999999987 999999999999999998433 3344444
Q ss_pred HHHHhhCCchHHHHHHHHHHHHH
Q 007300 562 NGMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 562 ~~~~~~fs~~~~a~~~~~~~~~l 584 (609)
..+.+.|||+..++++.++|+++
T Consensus 355 ~~~~~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 355 RRVAERFSWENVAERLLELYREV 377 (377)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhC
Confidence 55689999999999999999764
No 55
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=1e-30 Score=282.14 Aligned_cols=218 Identities=17% Similarity=0.137 Sum_probs=172.9
Q ss_pred HHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHH
Q 007300 307 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 386 (609)
Q Consensus 307 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 386 (609)
+++..++.+|.++++|++.++.+.+. ++.. .++.+|+||+|++.+.+...
T Consensus 182 ~~~~~~~~aD~ii~~S~~~~~~~~~~--~~~~-------~~~~vi~~gvd~~~~~~~~~--------------------- 231 (419)
T cd03806 182 LYGLAGSFADVVMVNSTWTRNHIRSL--WKRN-------TKPSIVYPPCDVEELLKLPL--------------------- 231 (419)
T ss_pred HHHHHhhcCCEEEECCHHHHHHHHHH--hCcC-------CCcEEEcCCCCHHHhccccc---------------------
Confidence 45667889999999999999998862 2211 27899999999877654321
Q ss_pred HHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--C-----CeEEEEEeCCCh----hhHHHHHHHHHhCC-
Q 007300 387 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E-----NVQIIVLGTGKK----PMEKQLEQLEILYP- 454 (609)
Q Consensus 387 ~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~-----~~~lvivG~g~~----~~~~~l~~l~~~~~- 454 (609)
....+.++|+|+||+++.||++.+++|++++.+ + +++|+|+|++.. .+.+.++++..+++
T Consensus 232 --------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l 303 (419)
T cd03806 232 --------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL 303 (419)
T ss_pred --------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Confidence 011245799999999999999999999999865 2 599999998742 36677777777653
Q ss_pred -CceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCc-ccccc---cCcceeEeccccccc
Q 007300 455 -EKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL-VDTVE---EGFTGFQMGSFSVDC 529 (609)
Q Consensus 455 -~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~-~e~i~---~~~~G~l~~~~~~~~ 529 (609)
++|.+.+..+.+++..+|+.||++++||..|+||++++|||+||+|||+++.||. .|++. ++.+|+++
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~------- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA------- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe-------
Confidence 5788888888888899999999999999999999999999999999999999875 47887 79999985
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCHHHHHHH--HHHHHHhhCCchHHHH
Q 007300 530 EAVDPVDVAAVSTTVRRALATYGTQALAEM--MKNGMAQDLSWKGPAK 575 (609)
Q Consensus 530 ~~v~~~d~~~la~~I~~ll~~~~~~~~~~~--~~~~~~~~fs~~~~a~ 575 (609)
.|+++++++|.++++++ ......+ +++...++|||+.+.+
T Consensus 377 -----~d~~~la~ai~~ll~~~-~~~~~~~~~~~~~~~~~fs~~~f~~ 418 (419)
T cd03806 377 -----STAEEYAEAIEKILSLS-EEERLRIRRAARSSVKRFSDEEFER 418 (419)
T ss_pred -----CCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCHHHhcc
Confidence 39999999999999873 2222223 2233578899998753
No 56
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.7e-31 Score=293.11 Aligned_cols=287 Identities=17% Similarity=0.205 Sum_probs=214.9
Q ss_pred CCceEEEecccc-cchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCc
Q 007300 225 PYDVVFVANDWH-TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGR 303 (609)
Q Consensus 225 ~pDvV~h~h~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (609)
++||| |+|... .+++...++.. .++|+|++.|++....+... +....+.... +.+.+...
T Consensus 173 ~~dvi-H~~s~~~~g~~~~~~~~~-------~~~p~I~t~Hg~~~~e~~~~--~~~~~~~~~~---------~~~~~~~~ 233 (475)
T cd03813 173 KADVY-HAVSTGYAGLLGALAKAR-------RGTPFLLTEHGIYTRERKIE--LLQADWEMSY---------FRRLWIRF 233 (475)
T ss_pred CCCEE-eccCcchHHHHHHHHHHH-------hCCCEEEecCCccHHHHHHH--HHhcccchHH---------HHHHHHHH
Confidence 57999 999643 23344444443 58999999997543211100 0000000000 00000001
Q ss_pred hhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchH
Q 007300 304 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 383 (609)
Q Consensus 304 ~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~ 383 (609)
...+.+..++.||.|+++|+..++.+.+ +|.+.+ ++.+||||+|.+.|.+....
T Consensus 234 ~~~l~~~~~~~ad~Ii~~s~~~~~~~~~---~g~~~~------ki~vIpNgid~~~f~~~~~~----------------- 287 (475)
T cd03813 234 FESLGRLAYQAADRITTLYEGNRERQIE---DGADPE------KIRVIPNGIDPERFAPARRA----------------- 287 (475)
T ss_pred HHHHHHHHHHhCCEEEecCHHHHHHHHH---cCCCHH------HeEEeCCCcCHHHcCCcccc-----------------
Confidence 1233466788999999999999988765 566655 89999999999888765310
Q ss_pred HHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCC--hhhHHHHHHHHHhCC--Cce
Q 007300 384 LKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK--KPMEKQLEQLEILYP--EKA 457 (609)
Q Consensus 384 ~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~--~~~~~~l~~l~~~~~--~~v 457 (609)
. ...+.++|+|+||+.+.||++.+++|++.+.+ ++++|+|+|+++ +.+.+.++++..+++ ++|
T Consensus 288 ---------~--~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V 356 (475)
T cd03813 288 ---------R--PEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNV 356 (475)
T ss_pred ---------c--cCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeE
Confidence 0 12355899999999999999999999999875 689999999984 457778888877654 467
Q ss_pred EEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccccccc------CcceeEeccccccccc
Q 007300 458 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------GFTGFQMGSFSVDCEA 531 (609)
Q Consensus 458 ~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~------~~~G~l~~~~~~~~~~ 531 (609)
.+.+ .+.+..+|+.+|++++||..|+||++++|||+||+|||+|+.||..|++.+ |.+|+++
T Consensus 357 ~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G~lv--------- 424 (475)
T cd03813 357 KFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAGEVV--------- 424 (475)
T ss_pred EEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCceEEE---------
Confidence 7766 445667999999999999999999999999999999999999999999998 6799987
Q ss_pred CCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH---HHhhCCchHHHHHHHHHHH
Q 007300 532 VDPVDVAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 532 v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~ 582 (609)
++.|+++++++|.+++++ ++.+.++++++ +.+.|+|+.++++|.++|+
T Consensus 425 -~~~d~~~la~ai~~ll~~--~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 425 -PPADPEALARAILRLLKD--PELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred -CCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999999999999999998 55555555544 5788999999999999984
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=1.4e-30 Score=270.29 Aligned_cols=340 Identities=22% Similarity=0.227 Sum_probs=235.7
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++++..+.| .||.+.++..|+++|.++||+|++++..... ...+. ...++.+.
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~~---------------------~~~~~~~~ 55 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE-PPFYE---------------------LDPKIKVI 55 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC-CCccc---------------------cCCcccee
Confidence 79999988765 6999999999999999999999999987443 11000 01122222
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+...... . ..........+.+.++.. +||+| ++|.+. ...++.
T Consensus 56 ~~~~~~~~-~---------------------~~~~~~~~~~~~~~l~~~----------~~d~i-~~~~~~---~~~~~~ 99 (348)
T cd03820 56 DLGDKRDS-K---------------------LLARFKKLRRLRKLLKNN----------KPDVV-ISFLTS---LLTFLA 99 (348)
T ss_pred eccccccc-c---------------------hhccccchHHHHHhhccc----------CCCEE-EEcCch---HHHHHH
Confidence 22111000 0 000001112222222222 59999 887655 222222
Q ss_pred HhhcCCCcccC-ceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 246 TMYKPKGMYKS-AKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 246 ~~~~~~~~~~~-~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
... .+ .|++++.|+........ .......+..++.+|.++++|+.
T Consensus 100 ~~~------~~~~~~i~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~d~ii~~s~~ 145 (348)
T cd03820 100 SLG------LKIVKLIVSEHNSPDAYKKR----------------------------LRRLLLRRLLYRRADAVVVLTEE 145 (348)
T ss_pred HHh------hccccEEEecCCCccchhhh----------------------------hHHHHHHHHHHhcCCEEEEeCHH
Confidence 221 23 49999999643211000 00112367788999999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
.+.... ... ..++.+|+||+|...+.+. ...+.+.++
T Consensus 146 ~~~~~~-----~~~------~~~~~vi~~~~~~~~~~~~--------------------------------~~~~~~~i~ 182 (348)
T cd03820 146 DRALYY-----KKF------NKNVVVIPNPLPFPPEEPS--------------------------------SDLKSKRIL 182 (348)
T ss_pred HHHHhh-----ccC------CCCeEEecCCcChhhcccc--------------------------------CCCCCcEEE
Confidence 973222 112 2289999999998765432 012457999
Q ss_pred EEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCcEEEe
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
|+|++.+.||++.++++++.+.+ ++++|+|+|++. ....++++..+.+ .++.+.+. .+++..+|+.||++++
T Consensus 183 ~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ 258 (348)
T cd03820 183 AVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP--EREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVL 258 (348)
T ss_pred EEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC--CHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEe
Confidence 99999999999999999999974 789999999987 4455555555543 34444433 5667789999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCceEEcCCC-CcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHH
Q 007300 481 PSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEM 559 (609)
Q Consensus 481 pS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~ 559 (609)
||.+|++|++++|||++|+|||+++.+ +..+++.++.+|+++ ++.|+++++++|.+++++ ++.+.++
T Consensus 259 ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g~~~----------~~~~~~~~~~~i~~ll~~--~~~~~~~ 326 (348)
T cd03820 259 TSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNGLLV----------PNGDVEALAEALLRLMED--EELRKRM 326 (348)
T ss_pred CccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcceEEe----------CCCCHHHHHHHHHHHHcC--HHHHHHH
Confidence 999999999999999999999999975 456777777799987 999999999999999987 6666666
Q ss_pred HHHH--HHhhCCchHHHHHHHH
Q 007300 560 MKNG--MAQDLSWKGPAKKWEE 579 (609)
Q Consensus 560 ~~~~--~~~~fs~~~~a~~~~~ 579 (609)
++++ +.++|+|+.++++|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd03820 327 GANARESAERFSIENIIKQWEE 348 (348)
T ss_pred HHHHHHHHHHhCHHHHHHHhcC
Confidence 6665 5688999999999863
No 58
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=3.5e-30 Score=268.58 Aligned_cols=352 Identities=20% Similarity=0.222 Sum_probs=244.5
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|+.. .||...++..|+++|.++||+|+++++...... .....|++.+
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~-----------------------~~~~~~~~~~ 51 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE-----------------------ELEALGVKVI 51 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc-----------------------ccccCCceEE
Confidence 68999876 488999999999999999999999997633211 1112344444
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+...... . ...+.......+.+.++.. +||+| |+|.+....+..+..
T Consensus 52 ~~~~~~~~--------------------~-~~~~~~~~~~~~~~~~~~~----------~~dvv-~~~~~~~~~~~~~~~ 99 (359)
T cd03808 52 PIPLDRRG--------------------I-NPFKDLKALLRLYRLLRKE----------RPDIV-HTHTPKPGILGRLAA 99 (359)
T ss_pred eccccccc--------------------c-ChHhHHHHHHHHHHHHHhc----------CCCEE-EEccccchhHHHHHH
Confidence 44211100 0 0001111122223333333 59999 998766665555554
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
... ...++++++|+..+..... .+ .........+..+..+|.++++|+..
T Consensus 100 ~~~------~~~~~i~~~~~~~~~~~~~-----------~~-------------~~~~~~~~~~~~~~~~d~ii~~s~~~ 149 (359)
T cd03808 100 RLA------GVPKVIYTVHGLGFVFTSG-----------GL-------------KRRLYLLLERLALRFTDKVIFQNEDD 149 (359)
T ss_pred HHc------CCCCEEEEecCcchhhccc-----------hh-------------HHHHHHHHHHHHHhhccEEEEcCHHH
Confidence 422 4678888888654311100 00 00112234566788899999999999
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+.+ .+... ....+.+++||+|...+.+.... ...+.+.|+|
T Consensus 150 ~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~i~~ 193 (359)
T cd03808 150 RDLALK---LGIIK----KKKTVLIPGSGVDLDRFSPSPEP-----------------------------IPEDDPVFLF 193 (359)
T ss_pred HHHHHH---hcCCC----cCceEEecCCCCChhhcCccccc-----------------------------cCCCCcEEEE
Confidence 999986 22211 02267788999998877654210 1125589999
Q ss_pred EeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHH-hCCCceEEEeecChHHHHHHHHhCcEEEecC
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEI-LYPEKARGVAKFNIPLAHMIIAGADFILIPS 482 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~-~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS 482 (609)
+|++.+.||++.+++++..+.+ ++++|+|+|.+..........+.. ....++.+.+. .+++..+|+.||++++||
T Consensus 194 ~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~i~ps 271 (359)
T cd03808 194 VARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGF--RDDVPELLAAADVFVLPS 271 (359)
T ss_pred EeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeec--cccHHHHHHhccEEEecC
Confidence 9999999999999999999874 689999999987432222111111 12345665554 455678999999999999
Q ss_pred CCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 007300 483 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 562 (609)
Q Consensus 483 ~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~ 562 (609)
..|++|++++|||++|+|||+++.++..|++.++.+|+++ +++|+++++++|.+++.+ ++.+.+++++
T Consensus 272 ~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~~~~g~~~----------~~~~~~~~~~~i~~l~~~--~~~~~~~~~~ 339 (359)
T cd03808 272 YREGLPRVLLEAMAMGRPVIATDVPGCREAVIDGVNGFLV----------PPGDAEALADAIERLIED--PELRARMGQA 339 (359)
T ss_pred cccCcchHHHHHHHcCCCEEEecCCCchhhhhcCcceEEE----------CCCCHHHHHHHHHHHHhC--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 999999999999999987 5555555555
Q ss_pred H---HHhhCCchHHHHHHH
Q 007300 563 G---MAQDLSWKGPAKKWE 578 (609)
Q Consensus 563 ~---~~~~fs~~~~a~~~~ 578 (609)
+ +.++|||+.++++|+
T Consensus 340 ~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 340 ARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHhcCHHHHHHHhh
Confidence 4 578999999999886
No 59
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.98 E-value=4.5e-32 Score=270.75 Aligned_cols=235 Identities=40% Similarity=0.684 Sum_probs=175.6
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCC-ceEEE--------EEeCCEEeeEEEEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDT-DVVIE--------LKVGDKIEKVRFFH 156 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~ 156 (609)
||++|+.|++|+.++||+|+++..|+++|+++||+|+|++|.|+...+.... ....+ +.+.. ...+++++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 7999999999999999999999999999999999999999999776664311 11111 22221 15678888
Q ss_pred eeEcCeeEEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccc
Q 007300 157 CHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWH 236 (609)
Q Consensus 157 ~~~~gv~~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~ 236 (609)
...+||++++++++.++.+ ..+|++. +.+|.++..||.+|+++++++++.+++. |||| |+|||+
T Consensus 80 ~~~~~v~v~~i~~~~~f~r------~~iY~~~-~~~~~d~~~rf~~fs~a~le~~~~l~~~--------pDII-H~hDW~ 143 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDR------PGIYGDN-GGDYPDNAERFAFFSRAALELLKKLGWK--------PDII-HCHDWH 143 (245)
T ss_dssp EEETTEEEEEEESHHHHGS------SSSSBST-SSBHTTHHHHHHHHHHHHHHHHCTCT-S---------SEE-EEECGG
T ss_pred EEcCCccEEEecChhhccc------cceeccC-CCcchhHHHHHHHHHHHHHHHHHhhCCC--------CCEE-EecCch
Confidence 8899999999999998876 5699876 7789999999999999999999997654 9999 999999
Q ss_pred cchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCC
Q 007300 237 TSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESD 316 (609)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad 316 (609)
++++|.+++..++..+.+.++|+++||||+.+||.++...+..+++|......... ......+++++.++..||
T Consensus 144 tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~------~~~~~~in~lk~gi~~AD 217 (245)
T PF08323_consen 144 TALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDE------YEFYGQINFLKAGIVYAD 217 (245)
T ss_dssp GTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTT------TEETTEEEHHHHHHHHSS
T ss_pred HHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhccccc------cccccccCHHHHHHHhcC
Confidence 99999999998877777789999999999999999998888888888654322211 112347899999999999
Q ss_pred EEEeeCHHHHHHHhcccCCCccchhhhc
Q 007300 317 MVLTVSPHYAQELVSGEDKGVELDNIIR 344 (609)
Q Consensus 317 ~vi~vS~~~~~~l~~~~~~g~~~~~~~~ 344 (609)
.|+|||+.|++++.+ ..+|..++++++
T Consensus 218 ~v~TVS~~Ya~Ei~~-~~~g~GL~~~l~ 244 (245)
T PF08323_consen 218 KVTTVSPTYAREIQT-PEFGEGLEGLLR 244 (245)
T ss_dssp EEEESSHHHHHHTTS-HHHHTT-HHHHH
T ss_pred EeeeCCHHHHHHHhC-cccCCChHHHhc
Confidence 999999999999997 344555555443
No 60
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=1.9e-30 Score=278.86 Aligned_cols=222 Identities=15% Similarity=0.125 Sum_probs=168.1
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHH
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 385 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
.+++..++.+|.++++|+..++.+.+. .+... .++.+||||+|.+.|.|....
T Consensus 164 ~~e~~~~~~ad~vi~~S~~~~~~l~~~--~~~~~------~~v~vipngvd~~~f~~~~~~------------------- 216 (397)
T TIGR03087 164 AYERAIAARFDAATFVSRAEAELFRRL--APEAA------GRITAFPNGVDADFFSPDRDY------------------- 216 (397)
T ss_pred HHHHHHHhhCCeEEEcCHHHHHHHHHh--CCCCC------CCeEEeecccchhhcCCCccc-------------------
Confidence 456778899999999999999998752 22222 289999999999988765311
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCHHHHH----HHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEE
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILA----AAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 459 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll----~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~ 459 (609)
.... ..+.++|+|+|++.+.||++.++ ++++.+.+ ++++|+|+|+|+. +.++++... .++.+
T Consensus 217 -----~~~~--~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~---~~~~~l~~~--~~V~~ 284 (397)
T TIGR03087 217 -----PNPY--PPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS---PAVRALAAL--PGVTV 284 (397)
T ss_pred -----cCCC--CCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh---HHHHHhccC--CCeEE
Confidence 0001 12447899999999999999988 44555543 7899999999873 245555433 34666
Q ss_pred EeecChHHHHHHHHhCcEEEecCCC-CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHH
Q 007300 460 VAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVA 538 (609)
Q Consensus 460 ~~~~~~~~~~~~l~~aDv~v~pS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~ 538 (609)
.+..+ ++..+|+.||++|+||+. |++|++++|||+||+|||+|+.++. .+..++.+|+++ + +|++
T Consensus 285 ~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~-~i~~~~~~g~lv----------~-~~~~ 350 (397)
T TIGR03087 285 TGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAE-GIDALPGAELLV----------A-ADPA 350 (397)
T ss_pred eeecC--CHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcccc-cccccCCcceEe----------C-CCHH
Confidence 65544 356799999999999985 9999999999999999999997542 333345678865 5 8999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHH---HHhhCCchHHHHHHHHHHH
Q 007300 539 AVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 539 ~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~ 582 (609)
+++++|.+++++ ++.+.+|++++ +.++|||+..+++++++|.
T Consensus 351 ~la~ai~~ll~~--~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 351 DFAAAILALLAN--PAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHcC--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999999999987 55555565554 5689999999999999885
No 61
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.97 E-value=3.4e-29 Score=268.65 Aligned_cols=447 Identities=17% Similarity=0.207 Sum_probs=264.0
Q ss_pred EEeecCCccccchHHHHhhchhHHHH-hCCCeEEEEeecCCCcc-ccCCCceEE----EE---EeCCEEeeEEEEEeeEc
Q 007300 90 VGTEVAPWSKTGGLGDVLGGLPPALA-ANGHRVMTIAPRYDQYK-DAWDTDVVI----EL---KVGDKIEKVRFFHCHKR 160 (609)
Q Consensus 90 vs~~~~P~~~~GG~~~~~~~La~aL~-~~Gh~V~vit~~~~~~~-~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~ 160 (609)
++.+.. .|.||+-+++..-|+.++ +.|-+..++.|...+.. ...+..... .. ....+.-.+++-+...+
T Consensus 7 ~swEV~--NKVGGIyTVi~tka~~~~~~~~d~y~~iGP~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~g~~v~~GrW~i~ 84 (590)
T cd03793 7 VAWEVA--NKVGGIYTVIKSKAPVTVEEWGDRYCLIGPYNEAKARTEVEILEPPNPALRQALDRMRSRGIKVHFGRWLIE 84 (590)
T ss_pred Eeehhh--ccCCCeeeeeecCcHHHHHHhCCeEEEECCCCccccCCccccCCCCchHHHHHHHHHHhCCCeEEEeEEEcC
Confidence 344443 368999999998888876 46888988888754211 111110000 00 00111234556666677
Q ss_pred CeeEEE-EeCcc-------hhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhh-ccCCCCCCCCCCceEEE
Q 007300 161 GVDRVF-VDHPW-------FLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRIL-NLNSNKYFSGPYDVVFV 231 (609)
Q Consensus 161 gv~~~~-v~~~~-------~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~pDvV~h 231 (609)
|-+++. +|... +....|-..|-. ++....+| ++..-|.+.+..+++.+... .. +++||+ |
T Consensus 85 G~P~viL~D~~~~~~~~~~~~~~lW~~~~i~--s~~~~~d~-nea~~fgy~~~~~i~~~~~~~~~-------~~~dVi-H 153 (590)
T cd03793 85 GYPKVVLFDIGSAAWKLDEWKGELWELCGIG--SPEGDRET-NDAIIFGFLVAWFLGEFAEQFDD-------EPAVVA-H 153 (590)
T ss_pred CCCeEEEEeCchhhhhHHHHHHHHHHHcCCC--CCCCCCcc-hHHHHHHHHHHHHHHHHHhhccC-------CCCeEE-E
Confidence 766664 44432 233466433311 12222333 33444666666555544433 21 368999 9
Q ss_pred ecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCcc-ccccccccCCccccccccccccC---CCCCcCCchhHH
Q 007300 232 ANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRF-AFEDFGLLNLPAQFKSSFDFIDG---YNKPVRGRKINW 307 (609)
Q Consensus 232 ~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 307 (609)
+|+|+++....+++... .++|+|+|+|.... ||. ... . ..+...+...+. ..+.-.......
T Consensus 154 ~HeWm~g~a~~~lK~~~------~~VptVfTtHAT~~-GR~l~~g------~-~~~y~~l~~~~~d~eA~~~~I~~r~~i 219 (590)
T cd03793 154 FHEWQAGVGLPLLRKRK------VDVSTIFTTHATLL-GRYLCAG------N-VDFYNNLDYFDVDKEAGKRGIYHRYCI 219 (590)
T ss_pred EcchhHhHHHHHHHHhC------CCCCEEEEeccccc-ccccccC------C-cccchhhhhcchhhhhhcccchHHHHH
Confidence 99999999999998532 68999999997765 553 111 0 111111111110 000001123346
Q ss_pred HHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchh-cccchH---
Q 007300 308 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV-MDAKPL--- 383 (609)
Q Consensus 308 ~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~-~~~~~~--- 383 (609)
++.....||.+++||+.++.++.. .++.+++ + |||||+|+..|.+..+. +++ ..++..
T Consensus 220 E~~aa~~Ad~fttVS~it~~E~~~--Ll~~~pd------~--ViPNGid~~~f~~~~e~--------~~~~~~~k~ki~~ 281 (590)
T cd03793 220 ERAAAHCAHVFTTVSEITAYEAEH--LLKRKPD------V--VLPNGLNVKKFSALHEF--------QNLHAQSKEKINE 281 (590)
T ss_pred HHHHHhhCCEEEECChHHHHHHHH--HhCCCCC------E--EeCCCcchhhcccchhh--------hhhhHHhhhhhhH
Confidence 778889999999999999999996 3677765 3 99999999998765320 000 000000
Q ss_pred -HHHHHHHHhCCCCCCCCcEEEE-Eecccc-ccCHHHHHHHHhhccc------CCe---EEEEEeCCC------------
Q 007300 384 -LKEALQAEVGLPVDRNIPVIGF-IGRLEE-QKGSDILAAAIPHFIK------ENV---QIIVLGTGK------------ 439 (609)
Q Consensus 384 -~~~~~~~~~gl~~~~~~~~i~~-iGrl~~-~Kg~~~ll~a~~~l~~------~~~---~lvivG~g~------------ 439 (609)
.+..++..++++. +.++++| +||++. +||+|.||+|+++|.. .+. -|+|+=.+.
T Consensus 282 f~~~~~~~~~~~~~--d~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~ 359 (590)
T cd03793 282 FVRGHFYGHYDFDL--DKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQA 359 (590)
T ss_pred HHHHHHhhhcCCCC--CCeEEEEEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchH
Confidence 1223455566643 4467777 799998 9999999999999854 222 234432210
Q ss_pred --hhhHHHHHHHHH----h-------------------------------------------------------------
Q 007300 440 --KPMEKQLEQLEI----L------------------------------------------------------------- 452 (609)
Q Consensus 440 --~~~~~~l~~l~~----~------------------------------------------------------------- 452 (609)
+.+.+.+.++.. +
T Consensus 360 ~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~ 439 (590)
T cd03793 360 VRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQ 439 (590)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhc
Confidence 011111111100 0
Q ss_pred C----CC--ceEEEeec---C----hHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCc----cccccc
Q 007300 453 Y----PE--KARGVAKF---N----IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL----VDTVEE 515 (609)
Q Consensus 453 ~----~~--~v~~~~~~---~----~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~----~e~i~~ 515 (609)
+ .+ +++++..| . +....+++++||++|+||.+|+||++.+|||+||+|+|+|+.+|+ .|++.+
T Consensus 440 l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~ 519 (590)
T cd03793 440 LFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIED 519 (590)
T ss_pred CcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhcc
Confidence 0 01 33344333 1 112346899999999999999999999999999999999999998 455544
Q ss_pred C-cceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHH-HHHHhhCCchHHHHHHHHHHHHHHH
Q 007300 516 G-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMK-NGMAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 516 ~-~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~-~~~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
+ ..|+.+-..+. .-.+.++++++++|.++++....+.+...+. ....+.|+|+..++.|.+.|+.++.
T Consensus 520 ~~~~gi~V~~r~~---~~~~e~v~~La~~m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 520 PESYGIYIVDRRF---KSPDESVQQLTQYMYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred CCCceEEEecCCc---cchHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 4 35665510000 0014667888888888885421122222221 1356889999999999999987764
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.97 E-value=6.6e-29 Score=268.53 Aligned_cols=208 Identities=16% Similarity=0.116 Sum_probs=159.4
Q ss_pred CCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCC
Q 007300 315 SDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGL 394 (609)
Q Consensus 315 ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 394 (609)
||.|+++|...++ +.. . .+. ..||||.+.|.|... ...++++|+
T Consensus 499 cD~VIaPS~atq~-L~~---~-----------vI~-nVnGVDte~F~P~~r--------------------~~~~r~lgi 542 (794)
T PLN02501 499 CHKVLRLSAATQD-LPK---S-----------VIC-NVHGVNPKFLKIGEK--------------------VAEERELGQ 542 (794)
T ss_pred CCEEEcCCHHHHH-hcc---c-----------cee-ecccccccccCCcch--------------------hHHHHhcCC
Confidence 8999999977774 321 0 222 237999999988642 222245666
Q ss_pred CCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHH
Q 007300 395 PVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 472 (609)
Q Consensus 395 ~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l 472 (609)
+... +.++|+||+.+.||++.|++|++.+.+ ++++|+|+|+|+ ..+.++++..+++.++.+.+.. +....+|
T Consensus 543 ~~~~--kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP--~reeLe~la~eLgL~V~FLG~~--dd~~~ly 616 (794)
T PLN02501 543 QAFS--KGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGE--DAHEVQRAAKRLDLNLNFLKGR--DHADDSL 616 (794)
T ss_pred cccc--CceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCc--cHHHHHHHHHHcCCEEEecCCC--CCHHHHH
Confidence 5433 458999999999999999999998865 589999999998 6677888777766545444332 2234689
Q ss_pred HhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhC
Q 007300 473 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 552 (609)
Q Consensus 473 ~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~ 552 (609)
+.+|+||+||..|+||++++||||||+|||+++.+|. +++.++.+|++ .+|+++++++|.+++.+.
T Consensus 617 asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll------------~~D~EafAeAI~~LLsd~- 682 (794)
T PLN02501 617 HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLT------------YKTSEDFVAKVKEALANE- 682 (794)
T ss_pred HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEe------------cCCHHHHHHHHHHHHhCc-
Confidence 9999999999999999999999999999999999985 45777788884 489999999999999973
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007300 553 TQALAEMMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 553 ~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
+....+.. ...|||+.+++++++.-+
T Consensus 683 -~~rl~~~a---~~~~SWeAaadrLle~~~ 708 (794)
T PLN02501 683 -PQPLTPEQ---RYNLSWEAATQRFMEYSD 708 (794)
T ss_pred -hhhhHHHH---HhhCCHHHHHHHHHHhhc
Confidence 22222222 448999999999988653
No 63
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=4.4e-28 Score=251.76 Aligned_cols=341 Identities=23% Similarity=0.248 Sum_probs=228.3
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++++..+. .||.+.++..|+++|.+.||+|.+++.............. .. .....
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~------------~~-------~~~~~ 57 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSN------------VK-------LIPVR 57 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccc------------hh-------hhcee
Confidence 7899998743 5999999999999999999999999987443221100000 00 00000
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEeccc-ccchHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDW-HTSLIPCYL 244 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~-~~~~~~~~l 244 (609)
.... . .+ ..........+.++.. +||+| ++|.. ...++..+.
T Consensus 58 ~~~~----~---------~~-------------~~~~~~~~~~~~~~~~----------~~dii-~~~~~~~~~~~~~~~ 100 (353)
T cd03811 58 VLKL----K---------SL-------------RDLLAILRLRRLLRKE----------KPDVV-ISHLTTTPNVLALLA 100 (353)
T ss_pred eeec----c---------cc-------------cchhHHHHHHHHHHhc----------CCCEE-EEcCccchhHHHHHH
Confidence 0000 0 00 0011222233333333 49999 88876 222222222
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
.. .++|+++++|+......... .......+..+..+|.++++|+.
T Consensus 101 ~~--------~~~~~i~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~d~ii~~s~~ 145 (353)
T cd03811 101 AR--------LGTKLIVWEHNSLSLELKRK---------------------------LRLLLLIRKLYRRADKIVAVSEG 145 (353)
T ss_pred hh--------cCCceEEEEcCcchhhhccc---------------------------hhHHHHHHhhccccceEEEeccc
Confidence 21 27899999997654211100 00013456778899999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
.++.+.+. ++.+. .++.+|+||+|...+.+...+ . . ..+. ..+.++|+
T Consensus 146 ~~~~~~~~--~~~~~------~~~~vi~~~~~~~~~~~~~~~-------------------~-~--~~~~--~~~~~~i~ 193 (353)
T cd03811 146 VKEDLLKL--LGIPP------DKIEVIYNPIDIEEIRALAEE-------------------P-L--ELGI--PPDGPVIL 193 (353)
T ss_pred hhhhHHHh--hcCCc------cccEEecCCcChhhcCcccch-------------------h-h--hcCC--CCCceEEE
Confidence 99999863 22222 289999999998877654321 0 0 1222 23558999
Q ss_pred EEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHHHHHHhCcEEEe
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
|+||+.+.||++.+++++..+.+ ++++|+++|.++ ....++++..+++ +++.+.+. .+++..+++.||++++
T Consensus 194 ~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~~d~~i~ 269 (353)
T cd03811 194 AVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP--LREELEALAKELGLADRVHFLGF--QSNPYPYLKAADLFVL 269 (353)
T ss_pred EEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc--cHHHHHHHHHhcCCCccEEEecc--cCCHHHHHHhCCEEEe
Confidence 99999999999999999999976 589999999987 4444555555443 34555544 2345679999999999
Q ss_pred cCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHH---HHHHHHHHhhCHHHHH
Q 007300 481 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVS---TTVRRALATYGTQALA 557 (609)
Q Consensus 481 pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la---~~I~~ll~~~~~~~~~ 557 (609)
||.+|++|++++|||++|+|||+++.||..|++.++.+|+++ +++|.++++ +.|..+.++ .+.+.
T Consensus 270 ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~~~g~~~----------~~~~~~~~~~~~~~i~~~~~~--~~~~~ 337 (353)
T cd03811 270 SSRYEGFPNVLLEAMALGTPVVATDCPGPREILEDGENGLLV----------PVGDEAALAAAALALLDLLLD--PELRE 337 (353)
T ss_pred CcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhcCCCceEEE----------CCCCHHHHHHHHHHHHhccCC--hHHHH
Confidence 999999999999999999999999999999999999999987 999999995 444444444 44555
Q ss_pred HHHHHH---HHhhCC
Q 007300 558 EMMKNG---MAQDLS 569 (609)
Q Consensus 558 ~~~~~~---~~~~fs 569 (609)
++++++ +.++|+
T Consensus 338 ~~~~~~~~~~~~~~~ 352 (353)
T cd03811 338 RLAAAARERVAREYS 352 (353)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555532 345554
No 64
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=9.9e-29 Score=260.83 Aligned_cols=206 Identities=20% Similarity=0.238 Sum_probs=170.7
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHH
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 385 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
.+.+..++.+|.++++|+..++.+.+. ++. +..+|+||+|.+.|.+..
T Consensus 145 ~~~~~~~~~~d~ii~~S~~~~~~~~~~--~~~---------~~~vi~~~~d~~~~~~~~--------------------- 192 (351)
T cd03804 145 IWDRRSAARVDYFIANSRFVARRIKKY--YGR---------DATVIYPPVDTDRFTPAE--------------------- 192 (351)
T ss_pred HHHHHHhcCCCEEEECCHHHHHHHHHH--hCC---------CcEEECCCCCHhhcCcCC---------------------
Confidence 345667889999999999999999752 221 567899999988776542
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecCh
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 465 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 465 (609)
...+.++|+||+.+.||++.+++|+.++. ++|+|+|+|+ ..+.+++ ....+|.+.+..+.
T Consensus 193 ------------~~~~~il~~G~~~~~K~~~~li~a~~~~~---~~l~ivG~g~--~~~~l~~---~~~~~V~~~g~~~~ 252 (351)
T cd03804 193 ------------EKEDYYLSVGRLVPYKRIDLAIEAFNKLG---KRLVVIGDGP--ELDRLRA---KAGPNVTFLGRVSD 252 (351)
T ss_pred ------------CCCCEEEEEEcCccccChHHHHHHHHHCC---CcEEEEECCh--hHHHHHh---hcCCCEEEecCCCH
Confidence 12357999999999999999999999883 8999999987 3444444 44567988888888
Q ss_pred HHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHH
Q 007300 466 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 545 (609)
Q Consensus 466 ~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~ 545 (609)
+++..+|+.||++++||. |+||++++|||+||+|||+++.||..|++.++.+|+++ +++|+++++++|.
T Consensus 253 ~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~~~G~~~----------~~~~~~~la~~i~ 321 (351)
T cd03804 253 EELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKGGALETVIDGVTGILF----------EEQTVESLAAAVE 321 (351)
T ss_pred HHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeCCCCEEEe----------CCCCHHHHHHHHH
Confidence 889899999999999999 99999999999999999999999999999999999987 9999999999999
Q ss_pred HHHHhhCHHHHHHHHHHHHHhhCCchHHHHHH
Q 007300 546 RALATYGTQALAEMMKNGMAQDLSWKGPAKKW 577 (609)
Q Consensus 546 ~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~ 577 (609)
++++++. ...+++.++ .++|+|+...+++
T Consensus 322 ~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~ 350 (351)
T cd03804 322 RFEKNED-FDPQAIRAH--AERFSESRFREKI 350 (351)
T ss_pred HHHhCcc-cCHHHHHHH--HHhcCHHHHHHHh
Confidence 9998742 233334333 3679999998875
No 65
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.96 E-value=4.6e-28 Score=265.15 Aligned_cols=224 Identities=17% Similarity=0.123 Sum_probs=172.5
Q ss_pred HhhcCCEEEeeCHHHHHHHhcccC-CCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHH
Q 007300 311 GILESDMVLTVSPHYAQELVSGED-KGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 389 (609)
Q Consensus 311 ~~~~ad~vi~vS~~~~~~l~~~~~-~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (609)
....+|.++++|+..++.+.+... ++... .++.+||||++...+.|..
T Consensus 267 ~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~------~ki~viP~g~~~~~~~~~~------------------------- 315 (500)
T TIGR02918 267 NADYIDFFITATDIQNQILKNQFKKYYNIE------PRIYTIPVGSLDELQYPEQ------------------------- 315 (500)
T ss_pred chhhCCEEEECCHHHHHHHHHHhhhhcCCC------CcEEEEcCCCcccccCccc-------------------------
Confidence 356789999999998888775211 12111 2799999998654433211
Q ss_pred HHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecCh
Q 007300 390 AEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNI 465 (609)
Q Consensus 390 ~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~ 465 (609)
.+....|+|+||+.+.||++.|++|+.++.+ ++++|+|+|+|+ ..+.++++..+++ +++.+.+ +.
T Consensus 316 -------~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~--~~~~l~~~i~~~~l~~~V~f~G-~~- 384 (500)
T TIGR02918 316 -------ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGG--EKQKLQKIINENQAQDYIHLKG-HR- 384 (500)
T ss_pred -------ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECch--hHHHHHHHHHHcCCCCeEEEcC-CC-
Confidence 1233689999999999999999999999865 799999999998 4567777776653 4566555 32
Q ss_pred HHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCC-CcccccccCcceeEec-ccccccccCCCCC-HHHHHH
Q 007300 466 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMG-SFSVDCEAVDPVD-VAAVST 542 (609)
Q Consensus 466 ~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~i~~~~~G~l~~-~~~~~~~~v~~~d-~~~la~ 542 (609)
.+..+++.||++|+||..|+||++++|||+||+|||+++.+ |.+|+|.++.+|+++. +.+.+ ++.| ++++++
T Consensus 385 -~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~nG~lv~~~~~~~----d~~~~~~~la~ 459 (500)
T TIGR02918 385 -NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKNGYLIPIDEEED----DEDQIITALAE 459 (500)
T ss_pred -CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCCEEEEeCCcccc----chhHHHHHHHH
Confidence 35568999999999999999999999999999999999986 8999999999999871 00000 1223 899999
Q ss_pred HHHHHHHhhCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHHH
Q 007300 543 TVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 543 ~I~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~l 584 (609)
+|.++++ ++.+.+|++++ .++.|||+.++++|+++|+++
T Consensus 460 ~I~~ll~---~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~~~ 500 (500)
T TIGR02918 460 KIVEYFN---SNDIDAFHEYSYQIAEGFLTANIIEKWKKLVREV 500 (500)
T ss_pred HHHHHhC---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 9999994 33566676666 468899999999999999764
No 66
>PHA01630 putative group 1 glycosyl transferase
Probab=99.96 E-value=3.5e-28 Score=253.30 Aligned_cols=231 Identities=14% Similarity=0.156 Sum_probs=171.5
Q ss_pred HHHHHH-hhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHH
Q 007300 306 NWMKAG-ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 384 (609)
Q Consensus 306 ~~~k~~-~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
.++... .+.+|.++++|+..++.+.+ .|++. ..++.+||||+|.+.|.+...
T Consensus 85 ~~~~~~~~~~ad~ii~~S~~~~~~l~~---~g~~~-----~~~i~vIpNGVd~~~f~~~~~------------------- 137 (331)
T PHA01630 85 TALYFFRNQPVDEIVVPSQWSKNAFYT---SGLKI-----PQPIYVIPHNLNPRMFEYKPK------------------- 137 (331)
T ss_pred HHHHHHhhccCCEEEECCHHHHHHHHH---cCCCC-----CCCEEEECCCCCHHHcCCCcc-------------------
Confidence 445555 57899999999999999876 34321 128999999999988865421
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEee
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 462 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~ 462 (609)
...+..++++.|++.++||++.|++|++.+.+ ++++++++|++.. +..+. ...+ + ...
T Consensus 138 -----------~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~--~~~l~----~~~~-~--~~~ 197 (331)
T PHA01630 138 -----------EKPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML--DPRLF----GLNG-V--KTP 197 (331)
T ss_pred -----------ccCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc--chhhc----cccc-e--ecc
Confidence 01133577788899999999999999999875 5899999997652 11111 1111 1 223
Q ss_pred cChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEeccc-c--------cccccCC
Q 007300 463 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSF-S--------VDCEAVD 533 (609)
Q Consensus 463 ~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~-~--------~~~~~v~ 533 (609)
.+.+++..+|+.||++++||++|+||++++|||+||+|||+|+.||+.|++.++.+|+++..- . ..|=++-
T Consensus 198 v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v 277 (331)
T PHA01630 198 LPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFL 277 (331)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccccc
Confidence 466788889999999999999999999999999999999999999999999999999886210 0 0111122
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHH-H--HHHhhCCchHHHHHHHHHHHH
Q 007300 534 PVDVAAVSTTVRRALATYGTQALAEMMK-N--GMAQDLSWKGPAKKWEETLLN 583 (609)
Q Consensus 534 ~~d~~~la~~I~~ll~~~~~~~~~~~~~-~--~~~~~fs~~~~a~~~~~~~~~ 583 (609)
+.|.+++++.+.+++.+++++.+.++.. + ...++|||+.++++|+++|++
T Consensus 278 ~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 278 DPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILEK 330 (331)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3477889999999998743343333332 2 257999999999999999974
No 67
>PHA01633 putative glycosyl transferase group 1
Probab=99.96 E-value=4.3e-27 Score=242.73 Aligned_cols=225 Identities=16% Similarity=0.234 Sum_probs=170.2
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHH
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 385 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
++..+.+.+.+.++++|+..++.+.+ .|++. .+ .|+||+|.+.|.|.... .
T Consensus 84 ~~y~~~m~~~~~vIavS~~t~~~L~~---~G~~~-------~i-~I~~GVD~~~f~p~~~~------------------~ 134 (335)
T PHA01633 84 EIVNKYLLQDVKFIPNSKFSAENLQE---VGLQV-------DL-PVFHGINFKIVENAEKL------------------V 134 (335)
T ss_pred HHHHHHHhcCCEEEeCCHHHHHHHHH---hCCCC-------ce-eeeCCCChhhcCccchh------------------h
Confidence 45566677788999999999999986 45542 23 47899999988775321 2
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--C----CeEEEEEeCCChhhHHHHHHHHHhCCCceEE
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGKKPMEKQLEQLEILYPEKARG 459 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~----~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~ 459 (609)
..++++++.... +.++|+++||+.++||++.|++|++++.+ + +++++++|.+ .++++. .++++.+
T Consensus 135 ~~~r~~~~~~~~-~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~------~~~~l~--l~~~V~f 205 (335)
T PHA01633 135 PQLKQKLDKDFP-DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK------QFTQLE--VPANVHF 205 (335)
T ss_pred HHHHHHhCcCCC-CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH------HHHHcC--CCCcEEE
Confidence 345666654322 45799999999999999999999999865 3 4688888742 223322 4456776
Q ss_pred Eeec---ChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccccccc------------------Ccc
Q 007300 460 VAKF---NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE------------------GFT 518 (609)
Q Consensus 460 ~~~~---~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~------------------~~~ 518 (609)
.+.+ +.+++..+|++||++|+||++|+||++++|||+||+|||+++.||+.|++.+ ..+
T Consensus 206 ~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~ 285 (335)
T PHA01633 206 VAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQ 285 (335)
T ss_pred EecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCc
Confidence 6432 4677888999999999999999999999999999999999999999997553 224
Q ss_pred eeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHH
Q 007300 519 GFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEE 579 (609)
Q Consensus 519 G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~ 579 (609)
||++ ++.|+++++++|.++++..+.+.+ .+.-...++.|+|+.++++|++
T Consensus 286 g~~~----------~~~d~~~la~ai~~~~~~~~~~~~-~~~~~~~a~~f~~~~~~~~~~~ 335 (335)
T PHA01633 286 KWKI----------HKFQIEDMANAIILAFELQDREER-SMKLKELAKKYDIRNLYTRFLE 335 (335)
T ss_pred eeee----------cCCCHHHHHHHHHHHHhccChhhh-hHHHHHHHHhcCHHHHHHHhhC
Confidence 5554 889999999999999876444333 2222346789999999999974
No 68
>PLN02275 transferase, transferring glycosyl groups
Probab=99.96 E-value=4.3e-27 Score=250.38 Aligned_cols=245 Identities=14% Similarity=0.084 Sum_probs=174.6
Q ss_pred CCceEEEecccccc---hHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcC
Q 007300 225 PYDVVFVANDWHTS---LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVR 301 (609)
Q Consensus 225 ~pDvV~h~h~~~~~---~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 301 (609)
+||+| |+|..+.. ..+.++... .++|+++++|+..+. .. ..+.... ....
T Consensus 100 ~~DvV-~~~~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~-~~------~~~~~~~------------~~~~ 152 (371)
T PLN02275 100 RPDVF-LVQNPPSVPTLAVVKLACWL-------RRAKFVIDWHNFGYT-LL------ALSLGRS------------HPLV 152 (371)
T ss_pred CCCEE-EEeCCCCcHHHHHHHHHHHH-------hCCCEEEEcCCccHH-HH------hcccCCC------------CHHH
Confidence 69999 88864432 222333332 478999999975321 00 0000000 0001
Q ss_pred CchhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccc
Q 007300 302 GRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAK 381 (609)
Q Consensus 302 ~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~ 381 (609)
.....+++..++.+|.++++|+.+++.+.+. +|+ ++.+|+||. .+.|.|....
T Consensus 153 ~~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~--~g~---------~i~vi~n~~-~~~f~~~~~~--------------- 205 (371)
T PLN02275 153 RLYRWYERHYGKMADGHLCVTKAMQHELDQN--WGI---------RATVLYDQP-PEFFRPASLE--------------- 205 (371)
T ss_pred HHHHHHHHHHHhhCCEEEECCHHHHHHHHHh--cCC---------CeEEECCCC-HHHcCcCCch---------------
Confidence 1123445677889999999999999998752 232 378999994 4666554210
Q ss_pred hHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcc-------------------cCCeEEEEEeCCChhh
Q 007300 382 PLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI-------------------KENVQIIVLGTGKKPM 442 (609)
Q Consensus 382 ~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~-------------------~~~~~lvivG~g~~~~ 442 (609)
. .+.. +...+++++||+.++||++.+++|+..+. .++++|+|+|+|+ .
T Consensus 206 --------~--~~~~-~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~--~ 272 (371)
T PLN02275 206 --------I--RLRP-NRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGP--Q 272 (371)
T ss_pred --------h--cccC-CCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCC--C
Confidence 0 0111 12357889999999999999999998872 2689999999998 5
Q ss_pred HHHHHHHHHhCC-CceEEEee-cChHHHHHHHHhCcEEEecC--C-CCCCcHHHHHHHHcCCceEEcCCCCcccccccCc
Q 007300 443 EKQLEQLEILYP-EKARGVAK-FNIPLAHMIIAGADFILIPS--R-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGF 517 (609)
Q Consensus 443 ~~~l~~l~~~~~-~~v~~~~~-~~~~~~~~~l~~aDv~v~pS--~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~ 517 (609)
.+.++++..+++ .++.++.. .+.++++.+|+.||++++|+ . .|++|++++|||+||+|||+++.||..|+|.++.
T Consensus 273 ~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~ 352 (371)
T PLN02275 273 KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDGK 352 (371)
T ss_pred HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccCCC
Confidence 667777776654 24666664 47888899999999999863 2 3889999999999999999999999999999999
Q ss_pred ceeEecccccccccCCCCCHHHHHHHHHHHH
Q 007300 518 TGFQMGSFSVDCEAVDPVDVAAVSTTVRRAL 548 (609)
Q Consensus 518 ~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll 548 (609)
+|+++ + |+++++++|.+++
T Consensus 353 ~G~lv----------~--~~~~la~~i~~l~ 371 (371)
T PLN02275 353 NGLLF----------S--SSSELADQLLELL 371 (371)
T ss_pred CeEEE----------C--CHHHHHHHHHHhC
Confidence 99986 4 6999999998864
No 69
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.96 E-value=6.6e-27 Score=251.91 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=178.6
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHH
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 385 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
.+.+..+..+|.++++|+..++.+.+. ++...+ ++.+++||+|...+.+..
T Consensus 175 ~~~~~~~~~~d~ii~~S~~~~~~l~~~--~~~~~~------ki~vi~~gv~~~~~~~~~--------------------- 225 (407)
T cd04946 175 PLRRYLLSSLDAVFPCSEQGRNYLQKR--YPAYKE------KIKVSYLGVSDPGIISKP--------------------- 225 (407)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHHH--CCCccc------cEEEEECCcccccccCCC---------------------
Confidence 445556889999999999999998863 444333 889999999876554321
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--C--CeEEEEEeCCChhhHHHHHHHHHhCC--CceEE
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E--NVQIIVLGTGKKPMEKQLEQLEILYP--EKARG 459 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~--~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~ 459 (609)
..++.+.|+++||+.+.||++.+++|+.++.+ + +++++++|+|+ ..+.++++..+.+ .++.+
T Consensus 226 ----------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--~~~~l~~~~~~~~~~~~V~f 293 (407)
T cd04946 226 ----------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGP--LEDTLKELAESKPENISVNF 293 (407)
T ss_pred ----------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--HHHHHHHHHHhcCCCceEEE
Confidence 11245789999999999999999999999976 2 57788899987 5666777765443 45777
Q ss_pred EeecChHHHHHHHHh--CcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCC-CC
Q 007300 460 VAKFNIPLAHMIIAG--ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP-VD 536 (609)
Q Consensus 460 ~~~~~~~~~~~~l~~--aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~-~d 536 (609)
.+..+.+++..+++. +|++++||..|++|++++|||++|+|||+|+.||..|++.++.+|+++ ++ +|
T Consensus 294 ~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~G~l~----------~~~~~ 363 (407)
T cd04946 294 TGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGNGLLL----------SKDPT 363 (407)
T ss_pred ecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCcEEEe----------CCCCC
Confidence 777777787778865 789999999999999999999999999999999999999999999987 65 58
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHH---HHhhCCchHHHHHHH
Q 007300 537 VAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWE 578 (609)
Q Consensus 537 ~~~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~ 578 (609)
+++++++|.+++++ ++.+.+|++++ +.++|+|+...+++.
T Consensus 364 ~~~la~~I~~ll~~--~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 PNELVSSLSKFIDN--EEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99999999999987 55666665555 579999999998875
No 70
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.94 E-value=6.4e-26 Score=241.25 Aligned_cols=214 Identities=21% Similarity=0.207 Sum_probs=172.8
Q ss_pred HHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHH
Q 007300 309 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 388 (609)
Q Consensus 309 k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (609)
...+..+|.++++|+..++.+.+. ++.. .++.+||||++...+.+...
T Consensus 152 ~~~~~~~d~ii~~s~~~~~~l~~~--~~~~-------~~v~~ip~g~~~~~~~~~~~----------------------- 199 (372)
T cd04949 152 FENLDKVDGVIVATEQQKQDLQKQ--FGNY-------NPIYTIPVGSIDPLKLPAQF----------------------- 199 (372)
T ss_pred HhChhhCCEEEEccHHHHHHHHHH--hCCC-------CceEEEcccccChhhcccch-----------------------
Confidence 334678999999999999998762 2211 15899999999876654310
Q ss_pred HHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecC
Q 007300 389 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFN 464 (609)
Q Consensus 389 ~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~ 464 (609)
.....+.++++||+.+.||++.+++++.++.+ ++++|+|+|.|. ....+.++....+ +++.+.+ +
T Consensus 200 -------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~--~~~~~~~~~~~~~~~~~v~~~g-~- 268 (372)
T cd04949 200 -------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGD--EEEKLKELIEELGLEDYVFLKG-Y- 268 (372)
T ss_pred -------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCc--hHHHHHHHHHHcCCcceEEEcC-C-
Confidence 11244689999999999999999999999865 789999999987 3445555554433 4455544 4
Q ss_pred hHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCC-CcccccccCcceeEecccccccccCCCCCHHHHHHH
Q 007300 465 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTT 543 (609)
Q Consensus 465 ~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~g-g~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~ 543 (609)
.+++..+|+.||++++||..|+||++++|||++|+|||+++.+ |..+++.++.+|+++ +++|+++++++
T Consensus 269 ~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv----------~~~d~~~la~~ 338 (372)
T cd04949 269 TRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLV----------PKGDIEALAEA 338 (372)
T ss_pred CCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEe----------CCCcHHHHHHH
Confidence 3456679999999999999999999999999999999999987 899999999999987 99999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHH--HhhCCchHHHHHH
Q 007300 544 VRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKW 577 (609)
Q Consensus 544 I~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~ 577 (609)
|.+++++ ++.+.++++++. .++|||+.++++|
T Consensus 339 i~~ll~~--~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 339 IIELLND--PKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred HHHHHcC--HHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 9999998 667777777664 6899999999876
No 71
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.94 E-value=1.6e-24 Score=229.57 Aligned_cols=342 Identities=16% Similarity=0.037 Sum_probs=224.1
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||++++.. .||...+..+|+++|.++||+|.+++.......+ .....|+++
T Consensus 2 ~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~----------------------~~~~~g~~~ 53 (357)
T PRK00726 2 KKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARGMEAR----------------------LVPKAGIEF 53 (357)
T ss_pred cEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh----------------------ccccCCCcE
Confidence 899999865 5888888999999999999999999975321010 001136777
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
+.++.+..... . ..........+...+.++.+.+... +|||| |+|.+...+...+.
T Consensus 54 ~~~~~~~~~~~-------~---------~~~~l~~~~~~~~~~~~~~~~ik~~-------~pDvv-~~~~~~~~~~~~~~ 109 (357)
T PRK00726 54 HFIPSGGLRRK-------G---------SLANLKAPFKLLKGVLQARKILKRF-------KPDVV-VGFGGYVSGPGGLA 109 (357)
T ss_pred EEEeccCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHHhc-------CCCEE-EECCCcchhHHHHH
Confidence 76654321110 0 0011112222333333333333221 59999 99987776655544
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
... .++|++++.|+..+ . ...+..+..+|.+++.++.
T Consensus 110 ~~~-------~~~p~v~~~~~~~~----------------------------------~--~~~r~~~~~~d~ii~~~~~ 146 (357)
T PRK00726 110 ARL-------LGIPLVIHEQNAVP----------------------------------G--LANKLLARFAKKVATAFPG 146 (357)
T ss_pred HHH-------cCCCEEEEcCCCCc----------------------------------c--HHHHHHHHHhchheECchh
Confidence 433 58899987664211 0 1123346689999998874
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
.... .+. .++++|+||+|...+.+.. .+.+++++. +.++|+
T Consensus 147 ~~~~--------~~~------~~i~vi~n~v~~~~~~~~~-----------------------~~~~~~~~~--~~~~i~ 187 (357)
T PRK00726 147 AFPE--------FFK------PKAVVTGNPVREEILALAA-----------------------PPARLAGRE--GKPTLL 187 (357)
T ss_pred hhhc--------cCC------CCEEEECCCCChHhhcccc-----------------------hhhhccCCC--CCeEEE
Confidence 4211 222 2899999999987654321 112344443 447889
Q ss_pred EEeccccccCHHHHH-HHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCC
Q 007300 405 FIGRLEEQKGSDILA-AAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 483 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll-~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~ 483 (609)
++|+....|+...++ +|++++.+....++++|+|. .++..+.+ . .+.++.+ ..|. +....+|+.||+++.++-
T Consensus 188 ~~gg~~~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~--~~~~~~~~-~-~~~~v~~-~g~~-~~~~~~~~~~d~~i~~~g 261 (357)
T PRK00726 188 VVGGSQGARVLNEAVPEALALLPEALQVIHQTGKGD--LEEVRAAY-A-AGINAEV-VPFI-DDMAAAYAAADLVICRAG 261 (357)
T ss_pred EECCcHhHHHHHHHHHHHHHHhhhCcEEEEEcCCCc--HHHHHHHh-h-cCCcEEE-eehH-hhHHHHHHhCCEEEECCC
Confidence 999988888865555 99988865335577889987 34444444 3 4434443 3443 456689999999998762
Q ss_pred CCCCcHHHHHHHHcCCceEEcCCCC--------cccccccCcceeEecccccccccCCCCC--HHHHHHHHHHHHHhhCH
Q 007300 484 FEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRALATYGT 553 (609)
Q Consensus 484 ~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~i~~~~~G~l~~~~~~~~~~v~~~d--~~~la~~I~~ll~~~~~ 553 (609)
+++++|||++|+|+|++..++ ..+.+.+..+|+++ ++.| +++++++|++++++ +
T Consensus 262 ----~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~----------~~~~~~~~~l~~~i~~ll~~--~ 325 (357)
T PRK00726 262 ----ASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLI----------PQSDLTPEKLAEKLLELLSD--P 325 (357)
T ss_pred ----HHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEE----------EcccCCHHHHHHHHHHHHcC--H
Confidence 689999999999999987643 23567777889976 7777 99999999999998 6
Q ss_pred HHHHHHHHHHH--HhhCCchHHHHHHHHHHH
Q 007300 554 QALAEMMKNGM--AQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 554 ~~~~~~~~~~~--~~~fs~~~~a~~~~~~~~ 582 (609)
+.+.+|++++. .+.++-+.+++.|+++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 326 ERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 67777777663 567888888888877654
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.94 E-value=2e-25 Score=243.19 Aligned_cols=292 Identities=18% Similarity=0.215 Sum_probs=204.8
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
.|+| +.||+|..++|.+++... ++.|+++.+|-..+... .|..+ | ..
T Consensus 132 ~d~i-wihDyhl~llp~~lr~~~------~~~~i~~f~HipfP~~e----~~~~l--p--------------------~~ 178 (460)
T cd03788 132 GDLV-WVHDYHLLLLPQMLRERG------PDARIGFFLHIPFPSSE----IFRCL--P--------------------WR 178 (460)
T ss_pred CCEE-EEeChhhhHHHHHHHhhC------CCCeEEEEEeCCCCChH----HHhhC--C--------------------Ch
Confidence 5998 999999999999998753 68899999995433110 00000 0 11
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCC--Cccch--h----hhccCCeeEecCCCCCCCcCCCCccccccccCcchh
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDK--GVELD--N----IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 377 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~--g~~~~--~----~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~ 377 (609)
..+-..+..+|.|.+.+..+...+.+.... +.+.. . .-+..++.+||||+|++.|.+....
T Consensus 179 ~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~----------- 247 (460)
T cd03788 179 EELLRGLLGADLIGFQTERYARNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAAS----------- 247 (460)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcC-----------
Confidence 233456777999999998887766652211 11100 0 0112378999999999888654210
Q ss_pred cccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CC----eEEEEEeCCC-------hhhHH
Q 007300 378 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVLGTGK-------KPMEK 444 (609)
Q Consensus 378 ~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~----~~lvivG~g~-------~~~~~ 444 (609)
+..+..+++..+.. ++.++|+++||+++.||++.+++|++.+.+ ++ ++|+++|.+. ..+.+
T Consensus 248 ----~~~~~~~~~~~~~~--~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~ 321 (460)
T cd03788 248 ----PEVQERAAELRERL--GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRR 321 (460)
T ss_pred ----chhHHHHHHHHHhc--CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHH
Confidence 11123333333333 255899999999999999999999998865 33 6788887532 23556
Q ss_pred HHHHHHHhCC--------CceEEEee-cChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCc----eEEcCCCCccc
Q 007300 445 QLEQLEILYP--------EKARGVAK-FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLVD 511 (609)
Q Consensus 445 ~l~~l~~~~~--------~~v~~~~~-~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~P----vI~s~~gg~~e 511 (609)
+++++..+.+ ..+.++.. .+.+++..+|+.||++++||..|+||++++|||+||+| +|+|+.+|..+
T Consensus 322 ~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~ 401 (460)
T cd03788 322 EVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAE 401 (460)
T ss_pred HHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchh
Confidence 6666544321 12444443 47788889999999999999999999999999999999 99999988887
Q ss_pred ccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH--HHhhCCchHHHHHHHHHH
Q 007300 512 TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 512 ~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~ 581 (609)
. +.+|+++ +|.|+++++++|.++++++ .+.+..+.+++ ...+|||+..+++++.-+
T Consensus 402 ~---~~~g~lv----------~p~d~~~la~ai~~~l~~~-~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 402 E---LSGALLV----------NPYDIDEVADAIHRALTMP-LEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred h---cCCCEEE----------CCCCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 7 4678976 9999999999999999873 33444444333 357899999999987643
No 73
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.94 E-value=1.1e-24 Score=235.67 Aligned_cols=292 Identities=17% Similarity=0.198 Sum_probs=206.0
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
-|+| ..||+|..++|.+++... ++.++.|.+|-+.+.. +.|..+ | ..
T Consensus 128 ~d~v-wvhDYhl~l~p~~lr~~~------~~~~igfFlHipfP~~----e~f~~l--p--------------------~r 174 (456)
T TIGR02400 128 GDIV-WVHDYHLMLLPAMLRELG------VQNKIGFFLHIPFPSS----EIYRTL--P--------------------WR 174 (456)
T ss_pred CCEE-EEecchhhHHHHHHHhhC------CCCeEEEEEeCCCCCh----HHHhhC--C--------------------cH
Confidence 4888 999999999999999874 6889999999543311 111110 1 12
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccch--hh---hccCCeeEecCCCCCCCcCCCCccccccccCcchhc
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD--NI---IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 378 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~--~~---~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~ 378 (609)
..+-.++..+|.|-+.+..+++.+.+... .|.+.. .+ -+..++.+||||+|++.|.+....
T Consensus 175 ~~il~gll~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~------------ 242 (456)
T TIGR02400 175 RELLEGLLAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKK------------ 242 (456)
T ss_pred HHHHHHHhcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcC------------
Confidence 34556788999999999999998876322 122111 00 133478999999999988764311
Q ss_pred ccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--C----CeEEEEEeC-----CC--hhhHHH
Q 007300 379 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGT-----GK--KPMEKQ 445 (609)
Q Consensus 379 ~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~----~~~lvivG~-----g~--~~~~~~ 445 (609)
.........++++++ ++++|+++||+++.||++.+++|++++.+ + ++.|+++|. ++ ..+++.
T Consensus 243 ~~~~~~~~~lr~~~~-----~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~ 317 (456)
T TIGR02400 243 PSVQKRIAELRESLK-----GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQ 317 (456)
T ss_pred hhHHHHHHHHHHHcC-----CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHH
Confidence 000111224566553 55799999999999999999999999864 3 366877753 22 234555
Q ss_pred HHHHHHhCCC--------ceEEEe-ecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCc----eEEcCCCCcccc
Q 007300 446 LEQLEILYPE--------KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLVDT 512 (609)
Q Consensus 446 l~~l~~~~~~--------~v~~~~-~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~P----vI~s~~gg~~e~ 512 (609)
++++..+.++ .+.++. ..+.+++..+|+.||++++||..|+||++++|||+||+| +|+|+.+|..+.
T Consensus 318 i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~ 397 (456)
T TIGR02400 318 VEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE 397 (456)
T ss_pred HHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH
Confidence 6665432111 133332 346788889999999999999999999999999999999 999999998888
Q ss_pred cccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH--HHHHHhhCCchHHHHHHHHHH
Q 007300 513 VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM--KNGMAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 513 i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~--~~~~~~~fs~~~~a~~~~~~~ 581 (609)
+. +|+++ +|.|+++++++|.++++++..++..++. ++. ...+|+...++++++-+
T Consensus 398 l~---~gllV----------nP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~-v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 398 LN---GALLV----------NPYDIDGMADAIARALTMPLEEREERHRAMMDK-LRKNDVQRWREDFLSDL 454 (456)
T ss_pred hC---CcEEE----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHh
Confidence 74 68876 9999999999999999874333333322 222 45699999999888654
No 74
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.92 E-value=5.1e-23 Score=217.10 Aligned_cols=324 Identities=15% Similarity=0.064 Sum_probs=206.7
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
+|++.+.+ .||-..++..|+++|.++||+|.++|.......+ .....|++++
T Consensus 1 ~~~~~~~~------~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~----------------------~~~~~~~~~~ 52 (350)
T cd03785 1 RILIAGGG------TGGHIFPALALAEELRERGAEVLFLGTKRGLEAR----------------------LVPKAGIPLH 52 (350)
T ss_pred CEEEEecC------chhhhhHHHHHHHHHHhCCCEEEEEECCCcchhh----------------------cccccCCceE
Confidence 46666654 6888888999999999999999999976321111 0012356666
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLK 245 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~ 245 (609)
.+..+.+..+ . .......+..+.+...++.+.+... +||+| |+|.+...+...+..
T Consensus 53 ~~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~i~~~-------~pDvI-~~~~~~~~~~~~~~a 108 (350)
T cd03785 53 TIPVGGLRRK-------G---------SLKKLKAPFKLLKGVLQARKILKKF-------KPDVV-VGFGGYVSGPVGLAA 108 (350)
T ss_pred EEEecCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHHhc-------CCCEE-EECCCCcchHHHHHH
Confidence 6543221110 0 0011111111222222222222211 59999 888655444333333
Q ss_pred HhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHH
Q 007300 246 TMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHY 325 (609)
Q Consensus 246 ~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~ 325 (609)
.. .++|+++..|+..+ . .+.+.....+|.++++|+..
T Consensus 109 ~~-------~~~p~v~~~~~~~~----------------------------------~--~~~~~~~~~~~~vi~~s~~~ 145 (350)
T cd03785 109 KL-------LGIPLVIHEQNAVP----------------------------------G--LANRLLARFADRVALSFPET 145 (350)
T ss_pred HH-------hCCCEEEEcCCCCc----------------------------------c--HHHHHHHHhhCEEEEcchhh
Confidence 32 47888876553110 0 11233456699999999988
Q ss_pred HHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEE
Q 007300 326 AQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 326 ~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~ 405 (609)
.+.+ . ..++.+|+||+|...+.+.. . +++++++. +.+++++
T Consensus 146 ~~~~--------~------~~~~~~i~n~v~~~~~~~~~---------------------~--~~~~~~~~--~~~~i~~ 186 (350)
T cd03785 146 AKYF--------P------KDKAVVTGNPVREEILALDR---------------------E--RARLGLRP--GKPTLLV 186 (350)
T ss_pred hhcC--------C------CCcEEEECCCCchHHhhhhh---------------------h--HHhcCCCC--CCeEEEE
Confidence 7751 1 12899999999977664321 1 55666654 4478888
Q ss_pred EeccccccCHH-HHHHHHhhcccCCeEE-EEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCC
Q 007300 406 IGRLEEQKGSD-ILAAAIPHFIKENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR 483 (609)
Q Consensus 406 iGrl~~~Kg~~-~ll~a~~~l~~~~~~l-vivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~ 483 (609)
+|+....|+.+ .++++++.+.++++++ +++|+|. .+.++++..++..++.+.+.. +.+..+|+.||+++.++-
T Consensus 187 ~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~---~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~sg 261 (350)
T cd03785 187 FGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD---LEEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISRAG 261 (350)
T ss_pred ECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc---HHHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEECCC
Confidence 88877777765 4568888887566765 4678773 244555544444456655433 566679999999998762
Q ss_pred CCCCcHHHHHHHHcCCceEEcCCCC--------cccccccCcceeEecccccccccCCCC--CHHHHHHHHHHHHHhhCH
Q 007300 484 FEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALATYGT 553 (609)
Q Consensus 484 ~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~i~~~~~G~l~~~~~~~~~~v~~~--d~~~la~~I~~ll~~~~~ 553 (609)
+++++|||++|+|+|+++.++ ..+.+.+..+|+++ ++. |+++++++|.+++++ +
T Consensus 262 ----~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v----------~~~~~~~~~l~~~i~~ll~~--~ 325 (350)
T cd03785 262 ----ASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLI----------PQEELTPERLAAALLELLSD--P 325 (350)
T ss_pred ----HhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEE----------ecCCCCHHHHHHHHHHHhcC--H
Confidence 689999999999999987654 24667777899986 766 899999999999986 6
Q ss_pred HHHHHHHHHHH
Q 007300 554 QALAEMMKNGM 564 (609)
Q Consensus 554 ~~~~~~~~~~~ 564 (609)
+.+.+|++++.
T Consensus 326 ~~~~~~~~~~~ 336 (350)
T cd03785 326 ERLKAMAEAAR 336 (350)
T ss_pred HHHHHHHHHHH
Confidence 77777777653
No 75
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.92 E-value=6e-23 Score=216.38 Aligned_cols=321 Identities=15% Similarity=0.074 Sum_probs=200.8
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||+|++.+ .||-.....+|+++|.++||+|++++.......+ .. ...|+++
T Consensus 1 ~~i~~~~g~------~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~--------------------~~--~~~g~~~ 52 (348)
T TIGR01133 1 KKVVLAAGG------TGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKR--------------------LV--PKAGIEF 52 (348)
T ss_pred CeEEEEeCc------cHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhc--------------------cc--ccCCCce
Confidence 799988865 3454545679999999999999999864221000 00 1236666
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
+.++...+... . .......+..+.....++.+.+... +||+| |+|.+........+
T Consensus 53 ~~i~~~~~~~~-------~---------~~~~l~~~~~~~~~~~~l~~~i~~~-------~pDvV-i~~~~~~~~~~~~~ 108 (348)
T TIGR01133 53 YFIPVGGLRRK-------G---------SFRLIKTPLKLLKAVFQARRILKKF-------KPDAV-IGFGGYVSGPAGLA 108 (348)
T ss_pred EEEeccCcCCC-------C---------hHHHHHHHHHHHHHHHHHHHHHHhc-------CCCEE-EEcCCcccHHHHHH
Confidence 66643221100 0 0111111111222222222222222 59999 88866555444444
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
... .++|++++.|+..+ . ...+...+.+|.++++|+.
T Consensus 109 ~~~-------~~~p~v~~~~~~~~----------------------------------~--~~~~~~~~~~d~ii~~~~~ 145 (348)
T TIGR01133 109 AKL-------LGIPLFHHEQNAVP----------------------------------G--LTNKLLSRFAKKVLISFPG 145 (348)
T ss_pred HHH-------cCCCEEEECCCCCc----------------------------------c--HHHHHHHHHhCeeEECchh
Confidence 433 47788744332100 0 1123446789999999998
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEE
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~ 404 (609)
.++.+ +..+|+||+|...+.+... +++++++. +.++|+
T Consensus 146 ~~~~~-----------------~~~~i~n~v~~~~~~~~~~-----------------------~~~~~~~~--~~~~i~ 183 (348)
T TIGR01133 146 AKDHF-----------------EAVLVGNPVRQEIRSLPVP-----------------------RERFGLRE--GKPTIL 183 (348)
T ss_pred HhhcC-----------------CceEEcCCcCHHHhcccch-----------------------hhhcCCCC--CCeEEE
Confidence 87654 2368999998765543210 12456653 457899
Q ss_pred EEeccccccCHHH-HHHHHhhcccCCeEEEEE-eCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecC
Q 007300 405 FIGRLEEQKGSDI-LAAAIPHFIKENVQIIVL-GTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPS 482 (609)
Q Consensus 405 ~iGrl~~~Kg~~~-ll~a~~~l~~~~~~lviv-G~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS 482 (609)
++|+....|++.. +++|++.+.+.+++++++ |++. . +.+++...+++ +...+.|....+..+|+.||+++.++
T Consensus 184 ~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~~~--~-~~l~~~~~~~~--l~~~v~~~~~~~~~~l~~ad~~v~~~ 258 (348)
T TIGR01133 184 VLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGKND--L-EKVKNVYQELG--IEAIVTFIDENMAAAYAAADLVISRA 258 (348)
T ss_pred EECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCcch--H-HHHHHHHhhCC--ceEEecCcccCHHHHHHhCCEEEECC
Confidence 9998888888654 558888886656777544 4443 2 45666555544 22222232325678999999999865
Q ss_pred CCCCCcHHHHHHHHcCCceEEcCCCC-------cccccccCcceeEecccccccccCCCCC--HHHHHHHHHHHHHhhCH
Q 007300 483 RFEPCGLIQLHAMRYGTVPIVASTGG-------LVDTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRALATYGT 553 (609)
Q Consensus 483 ~~E~~gl~~lEAma~G~PvI~s~~gg-------~~e~i~~~~~G~l~~~~~~~~~~v~~~d--~~~la~~I~~ll~~~~~ 553 (609)
+ |++++|||++|+|+|+++.+| ..+++.++.+|+++ ++.| +++++++|++++++ +
T Consensus 259 ---g-~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~----------~~~~~~~~~l~~~i~~ll~~--~ 322 (348)
T TIGR01133 259 ---G-ASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVI----------RQKELLPEKLLEALLKLLLD--P 322 (348)
T ss_pred ---C-hhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEE----------ecccCCHHHHHHHHHHHHcC--H
Confidence 2 789999999999999998754 23578888999986 7766 99999999999987 6
Q ss_pred HHHHHHHHHH
Q 007300 554 QALAEMMKNG 563 (609)
Q Consensus 554 ~~~~~~~~~~ 563 (609)
+.+.+|++++
T Consensus 323 ~~~~~~~~~~ 332 (348)
T TIGR01133 323 ANLEAMAEAA 332 (348)
T ss_pred HHHHHHHHHH
Confidence 7777787765
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.90 E-value=1.5e-21 Score=208.57 Aligned_cols=220 Identities=13% Similarity=0.104 Sum_probs=158.8
Q ss_pred hhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 312 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 312 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
.+.+|.++++|+..++.+.+ +|++.+ ++.++.|.++.. |.+..+ +..++++
T Consensus 145 ~~~ad~i~~~s~~~~~~l~~---~gi~~~------ki~v~G~p~~~~-f~~~~~-------------------~~~~~~~ 195 (380)
T PRK13609 145 HREVDRYFVATDHVKKVLVD---IGVPPE------QVVETGIPIRSS-FELKIN-------------------PDIIYNK 195 (380)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCChh------HEEEECcccChH-HcCcCC-------------------HHHHHHH
Confidence 55899999999999999986 676655 777776655432 222111 3456788
Q ss_pred hCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHH
Q 007300 392 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 471 (609)
Q Consensus 392 ~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~ 471 (609)
+|++.+. ..++++.|++...|+++.+++++.+. ++++++++|++.....+.++++....+.++.+.+ |. +.+..+
T Consensus 196 ~~l~~~~-~~il~~~G~~~~~k~~~~li~~l~~~--~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g-~~-~~~~~l 270 (380)
T PRK13609 196 YQLCPNK-KILLIMAGAHGVLGNVKELCQSLMSV--PDLQVVVVCGKNEALKQSLEDLQETNPDALKVFG-YV-ENIDEL 270 (380)
T ss_pred cCCCCCC-cEEEEEcCCCCCCcCHHHHHHHHhhC--CCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEe-ch-hhHHHH
Confidence 8887532 23556678888889999999998754 6899988765444466777777766665677664 43 245679
Q ss_pred HHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC-CCCcc----cccccCcceeEecccccccccCCCCCHHHHHHHHHH
Q 007300 472 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 546 (609)
Q Consensus 472 l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~-~gg~~----e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ 546 (609)
|+.||+++. ++.|++++|||++|+|+|+++ .+|.. +.+.+ +|+.+ ...|+++++++|.+
T Consensus 271 ~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~--~G~~~----------~~~~~~~l~~~i~~ 334 (380)
T PRK13609 271 FRVTSCMIT----KPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER--KGAAV----------VIRDDEEVFAKTEA 334 (380)
T ss_pred HHhccEEEe----CCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh--CCcEE----------EECCHHHHHHHHHH
Confidence 999999884 466999999999999999986 45532 23333 34433 55899999999999
Q ss_pred HHHhhCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHH
Q 007300 547 ALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLN 583 (609)
Q Consensus 547 ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~ 583 (609)
++++ ++.+.+|++++ +...++++.+++.+++.+..
T Consensus 335 ll~~--~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 335 LLQD--DMKLLQMKEAMKSLYLPEPADHIVDDILAENHV 371 (380)
T ss_pred HHCC--HHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhh
Confidence 9987 66777777765 34668999999999887754
No 77
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.90 E-value=2.6e-22 Score=230.06 Aligned_cols=299 Identities=18% Similarity=0.226 Sum_probs=208.3
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
-|+| -.||+|..++|.+++... +++++.|.+|-+.+... .|..+ | ..
T Consensus 148 ~d~v-WvhDYhL~llp~~lR~~~------~~~~igfFlHiPFPs~e----~fr~l--p--------------------~r 194 (797)
T PLN03063 148 GDVV-WCHDYHLMFLPQYLKEYN------NKMKVGWFLHTPFPSSE----IYKTL--P--------------------SR 194 (797)
T ss_pred CCEE-EEecchhhhHHHHHHHhC------CCCcEEEEecCCCCCHH----HHhhC--C--------------------CH
Confidence 3888 999999999999999875 79999999996543110 01100 0 12
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccc--hhhh---ccCCeeEecCCCCCCCcCCCCccccccccCcchhc
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVEL--DNII---RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 378 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~--~~~~---~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~ 378 (609)
.-+-.++..||.|-+.+..+++.+.+... .|.+. ..+. +..++.+||||||+..|.+....
T Consensus 195 ~~il~gll~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~------------ 262 (797)
T PLN03063 195 SELLRAVLTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCEL------------ 262 (797)
T ss_pred HHHHHHHhcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcC------------
Confidence 33455788999999999999998876221 12111 1111 22478999999999888654210
Q ss_pred ccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CC----eEEEEEeC-----CC--hhhHHH
Q 007300 379 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVLGT-----GK--KPMEKQ 445 (609)
Q Consensus 379 ~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~----~~lvivG~-----g~--~~~~~~ 445 (609)
.........+++.++ ++++|+++||+++.||++.+++|++.+.+ ++ +.|+.++. ++ ..++++
T Consensus 263 ~~~~~~~~~lr~~~~-----~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~ 337 (797)
T PLN03063 263 PEVKQHMKELKRFFA-----GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQ 337 (797)
T ss_pred hhHHHHHHHHHHhcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHH
Confidence 000011123444443 45799999999999999999999999865 44 44554432 22 235556
Q ss_pred HHHHHHhCCCc--------eEEEe-ecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCc----eEEcCCCCcccc
Q 007300 446 LEQLEILYPEK--------ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLVDT 512 (609)
Q Consensus 446 l~~l~~~~~~~--------v~~~~-~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~P----vI~s~~gg~~e~ 512 (609)
++++....+.+ +.+.. ..+.+++..+|+.||++++||..||+|++.+|||+||+| +|+|..+|..+.
T Consensus 338 v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~ 417 (797)
T PLN03063 338 VHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQS 417 (797)
T ss_pred HHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhh
Confidence 66665332211 22222 346678888999999999999999999999999999999 999999999887
Q ss_pred cccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH-HHHhhCCchHHHHHHHHHHHHHHH
Q 007300 513 VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN-GMAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 513 i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~-~~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
+ +.+|+++ +|.|++++|++|.++++....++..++.+. .....++|...++.+++.|.++..
T Consensus 418 l--~~~allV----------nP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~ 480 (797)
T PLN03063 418 L--GAGALLV----------NPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELNDIIV 480 (797)
T ss_pred h--cCCeEEE----------CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhh
Confidence 6 4468876 999999999999999996322222222211 246789999999999999988765
No 78
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.89 E-value=6.6e-21 Score=203.06 Aligned_cols=222 Identities=16% Similarity=0.160 Sum_probs=162.7
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHH
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 385 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
.+++..++.||.|+++|+...+.+.+ ++ . ++.+|+||+|.+.|.+.....
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~---~~---~------~i~~i~ngvd~~~f~~~~~~~------------------ 194 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRR---LN---P------NVVLVPNGVDYEHFAAARDPP------------------ 194 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhh---CC---C------CEEEcccccCHHHhhcccccC------------------
Confidence 56788899999999999999998875 33 1 899999999999887653210
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecCh
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 465 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~ 465 (609)
...+... ..+.++++|+|++.+.++++.+.++.+.. ++++|+|+|++.... ....+. ...++.+.+..+.
T Consensus 195 ~~~~~~~----~~~~~~i~y~G~l~~~~d~~ll~~la~~~--p~~~~vliG~~~~~~--~~~~~~--~~~nV~~~G~~~~ 264 (373)
T cd04950 195 PPPADLA----ALPRPVIGYYGAIAEWLDLELLEALAKAR--PDWSFVLIGPVDVSI--DPSALL--RLPNVHYLGPKPY 264 (373)
T ss_pred CChhHHh----cCCCCEEEEEeccccccCHHHHHHHHHHC--CCCEEEEECCCcCcc--ChhHhc--cCCCEEEeCCCCH
Confidence 0000000 12458999999999988888777666543 789999999983111 111121 1246888888888
Q ss_pred HHHHHHHHhCcEEEecCCC-----CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHH
Q 007300 466 PLAHMIIAGADFILIPSRF-----EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAV 540 (609)
Q Consensus 466 ~~~~~~l~~aDv~v~pS~~-----E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~l 540 (609)
++++.+++.+|++++|+.. +++|++++|||+||+|||+|+.+.+. .....+++ .++|++++
T Consensus 265 ~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~---~~~~~~~~-----------~~~d~~~~ 330 (373)
T cd04950 265 KELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVR---RYEDEVVL-----------IADDPEEF 330 (373)
T ss_pred HHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHH---hhcCcEEE-----------eCCCHHHH
Confidence 9999999999999999864 46899999999999999999865544 33333443 56799999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 007300 541 STTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLN 583 (609)
Q Consensus 541 a~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~ 583 (609)
+++|.+++.+.......+. ++ +.+.+||+..++++++.+++
T Consensus 331 ~~ai~~~l~~~~~~~~~~~-~~-~~~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 331 VAAIEKALLEDGPARERRR-LR-LAAQNSWDARAAEMLEALQE 371 (373)
T ss_pred HHHHHHHHhcCCchHHHHH-HH-HHHHCCHHHHHHHHHHHHHh
Confidence 9999998775433333222 22 67889999999999976654
No 79
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.88 E-value=7.9e-22 Score=226.38 Aligned_cols=297 Identities=17% Similarity=0.228 Sum_probs=207.6
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
-|+| ..||+|..++|.+++... ++.++.|.+|-+.++... |.. +| ..
T Consensus 134 ~d~v-wvhDYhl~l~p~~lr~~~------~~~~igfFlH~pfP~~~~----f~~--lp--------------------~~ 180 (726)
T PRK14501 134 GDVV-WVHDYQLMLLPAMLRERL------PDARIGFFLHIPFPSFEV----FRL--LP--------------------WR 180 (726)
T ss_pred CCEE-EEeCchhhhHHHHHHhhC------CCCcEEEEeeCCCCChHH----Hhh--CC--------------------Ch
Confidence 3888 999999999999998764 689999999965542211 111 11 12
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccc--hhh-h--ccCCeeEecCCCCCCCcCCCCccccccccCcchhc
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVEL--DNI-I--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVM 378 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~--~~~-~--~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~ 378 (609)
..+-.++..+|.|-+.+..+++.+.+... .+.+. ..+ + +..++.++|||+|++.|.+....
T Consensus 181 ~~ll~~ll~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~------------ 248 (726)
T PRK14501 181 EEILEGLLGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQD------------ 248 (726)
T ss_pred HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcC------------
Confidence 33455788999999999998888765321 11110 000 1 12368999999999988764210
Q ss_pred ccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--C----CeEEEEEeCCC-------hhhHHH
Q 007300 379 DAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK-------KPMEKQ 445 (609)
Q Consensus 379 ~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~----~~~lvivG~g~-------~~~~~~ 445 (609)
.........+++.++ +.++|+++||+++.||++.+++|++++.+ + +++|+++|.+. ..+++.
T Consensus 249 ~~~~~~~~~lr~~~~-----~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~ 323 (726)
T PRK14501 249 PEVQEEIRRLRQDLR-----GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKRE 323 (726)
T ss_pred chHHHHHHHHHHHcC-----CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHH
Confidence 000111223444432 55799999999999999999999999864 3 37898887431 235555
Q ss_pred HHHHHHhCCC--------ceEEE-eecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcC-----CceEEcCCCCccc
Q 007300 446 LEQLEILYPE--------KARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG-----TVPIVASTGGLVD 511 (609)
Q Consensus 446 l~~l~~~~~~--------~v~~~-~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G-----~PvI~s~~gg~~e 511 (609)
++++..+.+. .+.++ ..++.+++..+|+.||++++||..|+||++.+|||+|| +||++...|+..+
T Consensus 324 ~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~ 403 (726)
T PRK14501 324 IDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE 403 (726)
T ss_pred HHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHH
Confidence 6665443221 13333 34577888899999999999999999999999999994 4666666777777
Q ss_pred ccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH--HHHHHhhCCchHHHHHHHHHHHHHHHc
Q 007300 512 TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM--KNGMAQDLSWKGPAKKWEETLLNLEVA 587 (609)
Q Consensus 512 ~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~--~~~~~~~fs~~~~a~~~~~~~~~l~~~ 587 (609)
++ .|+++ +|.|+++++++|.+++.++..++..++. ++ ....|||+..++++++.|.++...
T Consensus 404 l~----~~llv----------~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~-~v~~~~~~~w~~~~l~~l~~~~~~ 466 (726)
T PRK14501 404 LA----EALLV----------NPNDIEGIAAAIKRALEMPEEEQRERMQAMQE-RLRRYDVHKWASDFLDELREAAEK 466 (726)
T ss_pred hC----cCeEE----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHhh
Confidence 65 37876 9999999999999999864333333332 22 246899999999999999988653
No 80
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.88 E-value=9.8e-21 Score=205.40 Aligned_cols=234 Identities=16% Similarity=0.122 Sum_probs=164.0
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHH
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLK 385 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 385 (609)
.+++..++.+|.|+++|+..++.+.+ .|++ .. +.+++|+ +.+.+.+.. .....
T Consensus 170 ~~~r~~~~~~d~ii~~S~~~~~~l~~---~g~~------~~-i~vi~n~-~~d~~~~~~----------------~~~~~ 222 (425)
T PRK05749 170 RFYRLLFKNIDLVLAQSEEDAERFLA---LGAK------NE-VTVTGNL-KFDIEVPPE----------------LAARA 222 (425)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHHH---cCCC------CC-cEecccc-cccCCCChh----------------hHHHH
Confidence 45567788999999999999999986 5543 12 6778884 333222111 01124
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCce------
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKA------ 457 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v------ 457 (609)
..++++++ + +.++++++|+. .|+.+.+++|++++.+ ++++|+|+|+|+.. .+.++++..+.+...
T Consensus 223 ~~~r~~~~-~---~~~vil~~~~~--~~~~~~ll~A~~~l~~~~~~~~liivG~g~~r-~~~l~~~~~~~gl~~~~~~~~ 295 (425)
T PRK05749 223 ATLRRQLA-P---NRPVWIAASTH--EGEEELVLDAHRALLKQFPNLLLILVPRHPER-FKEVEELLKKAGLSYVRRSQG 295 (425)
T ss_pred HHHHHHhc-C---CCcEEEEeCCC--chHHHHHHHHHHHHHHhCCCcEEEEcCCChhh-HHHHHHHHHhCCCcEEEccCC
Confidence 45677776 3 44788888864 6789999999999765 78999999998732 245666655544211
Q ss_pred --------EEEeecChHHHHHHHHhCcEEEe-cCCCCCCcHHHHHHHHcCCceEEcCC-CCcccccccC-cceeEecccc
Q 007300 458 --------RGVAKFNIPLAHMIIAGADFILI-PSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEG-FTGFQMGSFS 526 (609)
Q Consensus 458 --------~~~~~~~~~~~~~~l~~aDv~v~-pS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~i~~~-~~G~l~~~~~ 526 (609)
+.++. ...++..+|+.||++++ +|..|++|.+++|||+||+|||++.. ++..|+++.. .+|+++
T Consensus 296 ~~~~~~~~v~l~~-~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~---- 370 (425)
T PRK05749 296 EPPSADTDVLLGD-TMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAI---- 370 (425)
T ss_pred CCCCCCCcEEEEe-cHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeE----
Confidence 11111 23467789999999655 67779999999999999999999864 5566666542 457765
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 007300 527 VDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 527 ~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
.++|+++++++|.+++++ ++.+.+|++++...--+.....+++.+.+.+.+.
T Consensus 371 ------~~~d~~~La~~l~~ll~~--~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l~ 422 (425)
T PRK05749 371 ------QVEDAEDLAKAVTYLLTD--PDARQAYGEAGVAFLKQNQGALQRTLQLLEPYLP 422 (425)
T ss_pred ------EECCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcc
Confidence 789999999999999987 6667777776632111225778888888887654
No 81
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.87 E-value=6.5e-21 Score=180.04 Aligned_cols=164 Identities=27% Similarity=0.439 Sum_probs=139.1
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcc---cCCeEEEEEeCCChhhHHHHHHHHHhCC--CceEE
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI---KENVQIIVLGTGKKPMEKQLEQLEILYP--EKARG 459 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~---~~~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~ 459 (609)
++..+...+.+. +.++|+|+||+.+.||++.+++++..+. .++++++|+|++. ....+..+....+ .++.+
T Consensus 2 ~~~~~~~~~~~~--~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~~i~~ 77 (172)
T PF00534_consen 2 KDKLREKLKIPD--KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE--YKKELKNLIEKLNLKENIIF 77 (172)
T ss_dssp HHHHHHHTTT-T--TSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCC--HHHHHHHHHHHTTCGTTEEE
T ss_pred hHHHHHHcCCCC--CCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccc--cccccccccccccccccccc
Confidence 556677777654 4589999999999999999999999986 4799999999776 5556666665543 57888
Q ss_pred EeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHH
Q 007300 460 VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAA 539 (609)
Q Consensus 460 ~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~ 539 (609)
.+....+++..+|+.||++++||..|++|++++|||++|+|||+++.|+..|++.++.+|+++ ++.|+++
T Consensus 78 ~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~----------~~~~~~~ 147 (172)
T PF00534_consen 78 LGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLF----------DPNDIEE 147 (172)
T ss_dssp EESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEE----------STTSHHH
T ss_pred cccccccccccccccceeccccccccccccccccccccccceeeccccCCceeeccccceEEe----------CCCCHHH
Confidence 877787888899999999999999999999999999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHH
Q 007300 540 VSTTVRRALATYGTQALAEMMKNGM 564 (609)
Q Consensus 540 la~~I~~ll~~~~~~~~~~~~~~~~ 564 (609)
++++|.+++++ ++.+..|++++.
T Consensus 148 l~~~i~~~l~~--~~~~~~l~~~~~ 170 (172)
T PF00534_consen 148 LADAIEKLLND--PELRQKLGKNAR 170 (172)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--HHHHHHHHHHhc
Confidence 99999999998 677788877764
No 82
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.86 E-value=2.9e-20 Score=196.27 Aligned_cols=240 Identities=18% Similarity=0.180 Sum_probs=174.1
Q ss_pred HhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHH
Q 007300 311 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 390 (609)
Q Consensus 311 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (609)
....+|++++.|...+..+... ...++ ...+.+.+..+|.+.+.+.- | +.+...+...+.
T Consensus 206 ~~~~~~~~~~ns~~~~~~f~~~-~~~L~------~~d~~~~y~ei~~s~~~~~~-------~------~~~~~~~~~~r~ 265 (495)
T KOG0853|consen 206 TTGLAWKILVNSYFTKRQFKAT-FVSLS------NSDITSTYPEIDGSWFTYGQ-------Y------ESHLELRLPVRL 265 (495)
T ss_pred hhhccceEecchhhhhhhhhhh-hhhcC------CCCcceeeccccchhccccc-------c------ccchhcccccce
Confidence 4567899999999888888752 11221 22588888889887766521 1 111112222333
Q ss_pred HhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc-------CCeEEEEEeCC-C-------hhhHHHHHHHHHhCC-
Q 007300 391 EVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-------ENVQIIVLGTG-K-------KPMEKQLEQLEILYP- 454 (609)
Q Consensus 391 ~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~-------~~~~lvivG~g-~-------~~~~~~l~~l~~~~~- 454 (609)
..+.. .....+..+.++.+.||++++++++.++.. .+.+++++|+. . ..+.+.+.++..+++
T Consensus 266 ~~~v~--~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l 343 (495)
T KOG0853|consen 266 YRGVS--GIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDL 343 (495)
T ss_pred eeeec--ccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCc
Confidence 33433 223678899999999999999999998865 25788888842 1 246677777777764
Q ss_pred -CceEEE-eecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccC
Q 007300 455 -EKARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAV 532 (609)
Q Consensus 455 -~~v~~~-~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v 532 (609)
++++.+ ..........+++.+.+.+.....|+||++.+|||+||+|||+++.||..|+|.++.|||++
T Consensus 344 ~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~---------- 413 (495)
T KOG0853|consen 344 LGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLI---------- 413 (495)
T ss_pred cCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceee----------
Confidence 234444 33344444456777777777666699999999999999999999999999999999999997
Q ss_pred CCCCHH---HHHHHHHHHHHhhCHHHHHHHHHHH---HHhhCCchHHHHHHHHHHHHHH
Q 007300 533 DPVDVA---AVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 533 ~~~d~~---~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
+| +.+ .+++++.++..+ ++.+.+|+++. +.+.|||+.+.+++.++..+..
T Consensus 414 dp-~~e~~~~~a~~~~kl~~~--p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 414 DP-GQEAVAELADALLKLRRD--PELWARMGKNGLKRVKEMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred CC-chHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhcC
Confidence 77 555 699999999998 66677776665 6788999999999888887554
No 83
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.86 E-value=2.7e-19 Score=191.78 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=158.9
Q ss_pred hhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 312 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 312 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
...+|.+++.|+..++.+.+ .|++.+ ++.++.|+++..+..+. + +..++++
T Consensus 145 ~~~~d~~~v~s~~~~~~l~~---~gi~~~------ki~v~GiPv~~~f~~~~-~-------------------~~~~~~~ 195 (391)
T PRK13608 145 TPYSTRYYVATKETKQDFID---VGIDPS------TVKVTGIPIDNKFETPI-D-------------------QKQWLID 195 (391)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCCHH------HEEEECeecChHhcccc-c-------------------HHHHHHH
Confidence 45799999999999999986 577655 78887777764332221 1 4566778
Q ss_pred hCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHH
Q 007300 392 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMI 471 (609)
Q Consensus 392 ~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~ 471 (609)
+|++.+. ..++++.|++...||++.+++++.+. .+++++++++++.+.+.+.+++.... ..++.+.+ |. +.++.+
T Consensus 196 ~~l~~~~-~~ilv~~G~lg~~k~~~~li~~~~~~-~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G-~~-~~~~~~ 270 (391)
T PRK13608 196 NNLDPDK-QTILMSAGAFGVSKGFDTMITDILAK-SANAQVVMICGKSKELKRSLTAKFKS-NENVLILG-YT-KHMNEW 270 (391)
T ss_pred cCCCCCC-CEEEEECCCcccchhHHHHHHHHHhc-CCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEe-cc-chHHHH
Confidence 8887543 23556789999899999999986432 25788876654333344444443222 23455443 44 456789
Q ss_pred HHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC-CC----cccccccCcceeEecccccccccCCCCCHHHHHHHHHH
Q 007300 472 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 546 (609)
Q Consensus 472 l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~-gg----~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ 546 (609)
|+.||+++. ++.|++++|||++|+|+|+++. +| ...++.+.+.|+. ..|+++++++|.+
T Consensus 271 ~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~------------~~~~~~l~~~i~~ 334 (391)
T PRK13608 271 MASSQLMIT----KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKI------------ADTPEEAIKIVAS 334 (391)
T ss_pred HHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEE------------eCCHHHHHHHHHH
Confidence 999999996 3579999999999999999963 33 2223345555653 4699999999999
Q ss_pred HHHhhCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHH
Q 007300 547 ALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 547 ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
++++ ++.+.+|++++. .+.++++.+++++++++..+..
T Consensus 335 ll~~--~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 335 LTNG--NEQLTNMISTMEQDKIKYATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred HhcC--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhhhh
Confidence 9987 677888888774 5679999999999999876654
No 84
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.86 E-value=1.2e-19 Score=194.03 Aligned_cols=216 Identities=17% Similarity=0.147 Sum_probs=157.0
Q ss_pred hhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 312 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 312 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
.+.+|.++++|+..++.+.+ +|++.+ ++.++++++|.+.+.+... +..++++
T Consensus 148 ~~~~d~~~~~s~~~~~~l~~---~g~~~~------ki~v~g~~v~~~f~~~~~~-------------------~~~~r~~ 199 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRALK---RGLEPS------QIRVYGLPIRPSFARAVRP-------------------KDELRRE 199 (382)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCCHH------HEEEECcccCHhhccCCCC-------------------HHHHHHH
Confidence 46899999999999999886 677666 8999999998765443321 5678899
Q ss_pred hCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcc------cCCeE-EEEEeCCChhhHHHHHHHHHhCCCceEEEeecC
Q 007300 392 VGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI------KENVQ-IIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 464 (609)
Q Consensus 392 ~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~------~~~~~-lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~ 464 (609)
+|++.+ .++|+++|+....|++..+++++..+. .++.+ ++++|.+. .+.+.++++.. ..++.+.+ |.
T Consensus 200 ~gl~~~--~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~-~~~~~L~~~~~--~~~v~~~G-~~ 273 (382)
T PLN02605 200 LGMDED--LPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK-KLQSKLESRDW--KIPVKVRG-FV 273 (382)
T ss_pred cCCCCC--CcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH-HHHHHHHhhcc--cCCeEEEe-cc
Confidence 999754 489999999999999999999998753 35566 56777663 34555555422 23455444 33
Q ss_pred hHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC------CCcccccccCcceeEecccccccccCCCCCHH
Q 007300 465 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST------GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVA 538 (609)
Q Consensus 465 ~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~------gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~ 538 (609)
++++.+|++||++|.++ .|++++|||+||+|+|+++. |+. +.+.++..|+. ..|++
T Consensus 274 -~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~~~g~g~~------------~~~~~ 335 (382)
T PLN02605 274 -TNMEEWMGACDCIITKA----GPGTIAEALIRGLPIILNGYIPGQEEGNV-PYVVDNGFGAF------------SESPK 335 (382)
T ss_pred -ccHHHHHHhCCEEEECC----CcchHHHHHHcCCCEEEecCCCccchhhH-HHHHhCCceee------------cCCHH
Confidence 35778999999999865 48899999999999999984 333 44455556763 48999
Q ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHH--HhhCCchHHHHHHHHH
Q 007300 539 AVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEET 580 (609)
Q Consensus 539 ~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~ 580 (609)
+++++|.+++.+ +++.+++|++++. ....+.+.+++.+.++
T Consensus 336 ~la~~i~~ll~~-~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 336 EIARIVAEWFGD-KSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999999999986 2456677776653 3445556666555443
No 85
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.85 E-value=3e-19 Score=192.51 Aligned_cols=293 Identities=16% Similarity=0.151 Sum_probs=209.5
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
-|+| -.||+|..++|.+|+... ++.++.|.+|-+.+.. ..|..+ | ..
T Consensus 133 ~d~v-WVhDYhL~llp~~LR~~~------~~~~IgfFlHiPFPs~----eifr~L--P--------------------~r 179 (487)
T TIGR02398 133 GATV-WVHDYNLWLVPGYIRQLR------PDLKIAFFHHTPFPSA----DVFNIL--P--------------------WR 179 (487)
T ss_pred CCEE-EEecchhhHHHHHHHHhC------CCCeEEEEeeCCCCCh----HHHhhC--C--------------------ch
Confidence 3888 999999999999999864 6899999999644311 111111 1 12
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccchh-----------------------h---hccCCeeEecCCCCC
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN-----------------------I---IRKTGIKGIVNGMDV 357 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~~-----------------------~---~~~~~i~vI~nGvd~ 357 (609)
..+-.++..+|.|-+.+..+++.+.+... .|.+... + -+...+.++|.|||+
T Consensus 180 ~~ll~glL~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~ 259 (487)
T TIGR02398 180 EQIIGSLLCCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDP 259 (487)
T ss_pred HHHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecH
Confidence 34455788999999999999998876321 1211100 0 122358899999999
Q ss_pred CCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--C----CeE
Q 007300 358 QEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQ 431 (609)
Q Consensus 358 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~----~~~ 431 (609)
+.|.+.... .......+.++++++ ++++|++++|+++.||+...++|++++.+ | ++.
T Consensus 260 ~~f~~~~~~------------~~~~~~~~~lr~~~~-----~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~ 322 (487)
T TIGR02398 260 ERIRSALAA------------ASIREMMERIRSELA-----GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVT 322 (487)
T ss_pred HHHHHHhcC------------chHHHHHHHHHHHcC-----CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceE
Confidence 988654210 011122455777777 45799999999999999999999999865 4 578
Q ss_pred EEEEeCCC-------hhhHHHHHHHHHhCCC--------c-eEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHH
Q 007300 432 IIVLGTGK-------KPMEKQLEQLEILYPE--------K-ARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAM 495 (609)
Q Consensus 432 lvivG~g~-------~~~~~~l~~l~~~~~~--------~-v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAm 495 (609)
|+++|.+. ..+.+++++++.+.+. . +.+...++.+++..+|+.||++++||..||++++..|++
T Consensus 323 Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyv 402 (487)
T TIGR02398 323 LVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYV 402 (487)
T ss_pred EEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHH
Confidence 99998764 2466777777665421 1 233334477888889999999999999999999999999
Q ss_pred HcCC----ceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH-HHhhCCc
Q 007300 496 RYGT----VPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSW 570 (609)
Q Consensus 496 a~G~----PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fs~ 570 (609)
+|+. |+|.|..+|..+.+. .++++ +|.|++++|++|.++|.++..++..++.+.. ....++.
T Consensus 403 a~~~~~~GvLILSefaGaa~~l~---~AllV----------NP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~ 469 (487)
T TIGR02398 403 AAQGLLDGVLVLSEFAGAAVELK---GALLT----------NPYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDV 469 (487)
T ss_pred hhhcCCCCCEEEeccccchhhcC---CCEEE----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCH
Confidence 9988 999999999987763 36765 9999999999999999986545555544322 3455666
Q ss_pred hHHHHHHHHHH
Q 007300 571 KGPAKKWEETL 581 (609)
Q Consensus 571 ~~~a~~~~~~~ 581 (609)
..-++.+++-+
T Consensus 470 ~~W~~~fl~~l 480 (487)
T TIGR02398 470 QRWADEFLAAV 480 (487)
T ss_pred HHHHHHHHHHh
Confidence 66555555433
No 86
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=2e-19 Score=175.93 Aligned_cols=118 Identities=28% Similarity=0.443 Sum_probs=96.0
Q ss_pred EEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec-ChHHHHHHHHhCcEEEec
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIAGADFILIP 481 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~~l~~aDv~v~p 481 (609)
|+|++.+.||++.+++++..+.+ ++++++++|.+.+...............++.+...+ ..+....+++.||++++|
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~ 188 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLP 188 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEec
Confidence 99999999999999999999976 599999999987422222111122234567776665 456666677779999999
Q ss_pred CCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEe
Q 007300 482 SRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQM 522 (609)
Q Consensus 482 S~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~ 522 (609)
|..|++|++++|||++|+|+|+|+.++..|++.++.+|+++
T Consensus 189 ~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 189 SLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred ccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999999999999999999999999999999999999863
No 87
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.79 E-value=3.2e-17 Score=173.90 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=145.5
Q ss_pred HhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCC-CCCCcCCCCccccccccCcchhcccchHHHHHHH
Q 007300 311 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQ 389 (609)
Q Consensus 311 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (609)
..+.+|.++++|+..++.+.+ .|++.+ ++.+++|++ |...+.+... .....+
T Consensus 138 ~~~~ad~~~~~s~~~~~~l~~---~G~~~~------kI~vign~v~d~~~~~~~~~------------------~~~~~~ 190 (363)
T cd03786 138 IDKLSDLHFAPTEEARRNLLQ---EGEPPE------RIFVVGNTMIDALLRLLELA------------------KKELIL 190 (363)
T ss_pred HHHHhhhccCCCHHHHHHHHH---cCCCcc------cEEEECchHHHHHHHHHHhh------------------ccchhh
Confidence 346789999999999999886 677665 899999985 5332221110 011123
Q ss_pred HHhCCCCCCCCcEEEEEecccc---ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhC---CCceEEEeec
Q 007300 390 AEVGLPVDRNIPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY---PEKARGVAKF 463 (609)
Q Consensus 390 ~~~gl~~~~~~~~i~~iGrl~~---~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~---~~~v~~~~~~ 463 (609)
+.++++. +..++++.||... .||++.++++++++.+.++++++.|++. ..+.+++...++ ..++.+....
T Consensus 191 ~~~~~~~--~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~ 266 (363)
T cd03786 191 ELLGLLP--KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR--TRPRIREAGLEFLGHHPNVLLISPL 266 (363)
T ss_pred hhcccCC--CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC--hHHHHHHHHHhhccCCCCEEEECCc
Confidence 4666653 3357778999874 7999999999999865457776666655 445555554443 2456655444
Q ss_pred ChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC-CCcccccccCcceeEecccccccccCCCCCHHHHHH
Q 007300 464 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVST 542 (609)
Q Consensus 464 ~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~ 542 (609)
....+..+|+.||++|.+|- | ++.|||++|+|+|++.. +..++.++.|. ++. ...|++++++
T Consensus 267 ~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~~g~PvI~~~~~~~~~~~~~~g~-~~~-----------~~~~~~~i~~ 329 (363)
T cd03786 267 GYLYFLLLLKNADLVLTDSG----G-IQEEASFLGVPVLNLRDRTERPETVESGT-NVL-----------VGTDPEAILA 329 (363)
T ss_pred CHHHHHHHHHcCcEEEEcCc----c-HHhhhhhcCCCEEeeCCCCccchhhheee-EEe-----------cCCCHHHHHH
Confidence 55677789999999999984 4 47999999999999975 44556666543 332 2347999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 007300 543 TVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEET 580 (609)
Q Consensus 543 ~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~ 580 (609)
+|.+++++ +....+|. ...|.--..+++..++
T Consensus 330 ~i~~ll~~--~~~~~~~~----~~~~~~~~a~~~I~~~ 361 (363)
T cd03786 330 AIEKLLSD--EFAYSLMS----INPYGDGNASERIVEI 361 (363)
T ss_pred HHHHHhcC--chhhhcCC----CCCCCCCHHHHHHHHH
Confidence 99999987 44444443 3344444445555443
No 88
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.78 E-value=5.1e-17 Score=173.57 Aligned_cols=219 Identities=17% Similarity=0.121 Sum_probs=146.7
Q ss_pred HhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHH
Q 007300 311 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 390 (609)
Q Consensus 311 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (609)
..+.+|.++++|+..++.+.+ .|. ++.++.|.+.... .+.. .+..+++
T Consensus 131 ~~~~~d~i~~~~~~~~~~~~~---~g~---------~~~~~G~p~~~~~-~~~~-------------------~~~~~~~ 178 (380)
T PRK00025 131 IAKATDHVLALFPFEAAFYDK---LGV---------PVTFVGHPLADAI-PLLP-------------------DRAAARA 178 (380)
T ss_pred HHHHHhhheeCCccCHHHHHh---cCC---------CeEEECcCHHHhc-cccc-------------------ChHHHHH
Confidence 467899999999998888775 332 3444444432211 1100 1455677
Q ss_pred HhCCCCCCCCcEE-EEEe-ccccc-cCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhC-CCceEEEeecC
Q 007300 391 EVGLPVDRNIPVI-GFIG-RLEEQ-KGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY-PEKARGVAKFN 464 (609)
Q Consensus 391 ~~gl~~~~~~~~i-~~iG-rl~~~-Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~-~~~v~~~~~~~ 464 (609)
+++++.+ .+++ ++.| |..+. ++.+.++++++.+.+ ++++++++|.++ ...+.++++..+. +.++.. +.
T Consensus 179 ~l~~~~~--~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~-~~~~~~~~~~~~~~~~~v~~---~~ 252 (380)
T PRK00025 179 RLGLDPD--ARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP-KRREQIEEALAEYAGLEVTL---LD 252 (380)
T ss_pred HcCCCCC--CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-hhHHHHHHHHhhcCCCCeEE---Ec
Confidence 8888654 3554 4445 34443 457899999998864 589999987633 2455566655554 333332 22
Q ss_pred hHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEc-----------------CCCCcccccccCc--ceeEeccc
Q 007300 465 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-----------------STGGLVDTVEEGF--TGFQMGSF 525 (609)
Q Consensus 465 ~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s-----------------~~gg~~e~i~~~~--~G~l~~~~ 525 (609)
+++..+|+.||+++.+| |.+.+|||++|+|+|++ +.+++++++.++. .+++
T Consensus 253 -~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 322 (380)
T PRK00025 253 -GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELL---- 322 (380)
T ss_pred -ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhc----
Confidence 35677999999999987 88899999999999987 4566777777654 4454
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHHHHH
Q 007300 526 SVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 526 ~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
.+..|++++++.|.+++++ ++.+++|++++ ..+.. -...+++..+.+.++..
T Consensus 323 ------~~~~~~~~l~~~i~~ll~~--~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 323 ------QEEATPEKLARALLPLLAD--GARRQALLEGFTELHQQL-RCGADERAAQAVLELLK 376 (380)
T ss_pred ------CCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhh
Confidence 3778999999999999998 77777777765 23333 34466666666666553
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.78 E-value=1.4e-16 Score=167.01 Aligned_cols=185 Identities=16% Similarity=0.097 Sum_probs=134.2
Q ss_pred hHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHH
Q 007300 305 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 384 (609)
Q Consensus 305 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
..+++..++.+|.++++|+.+++.+.+ .|+..+ ++.+++|..+.....+..
T Consensus 114 ~~~~~~~~~~aD~iI~~S~~~~~~l~~---~g~~~~------~i~~~~~~~~~~~~~~~~-------------------- 164 (333)
T PRK09814 114 MKEEIDMLNLADVLIVHSKKMKDRLVE---EGLTTD------KIIVQGIFDYLNDIELVK-------------------- 164 (333)
T ss_pred hHHHHHHHHhCCEEEECCHHHHHHHHH---cCCCcC------ceEecccccccccccccc--------------------
Confidence 456788899999999999999999986 565433 666666554331111100
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecC
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 464 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~ 464 (609)
.....+.|+|+|++....++. + ..++++|+|+|+|+... ....++.+.+.++
T Consensus 165 -----------~~~~~~~i~yaG~l~k~~~l~---~-----~~~~~~l~i~G~g~~~~---------~~~~~V~f~G~~~ 216 (333)
T PRK09814 165 -----------TPSFQKKINFAGNLEKSPFLK---N-----WSQGIKLTVFGPNPEDL---------ENSANISYKGWFD 216 (333)
T ss_pred -----------cccCCceEEEecChhhchHHH---h-----cCCCCeEEEECCCcccc---------ccCCCeEEecCCC
Confidence 011346899999999443211 1 23679999999997321 2345688988999
Q ss_pred hHHHHHHHHhCcEEEecCCC-----------CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCC
Q 007300 465 IPLAHMIIAGADFILIPSRF-----------EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVD 533 (609)
Q Consensus 465 ~~~~~~~l~~aDv~v~pS~~-----------E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~ 533 (609)
.+++..+|+. |+.+++... -++|.++.|+|+||+|||+++.+++.|+|+++.+|+++ +
T Consensus 217 ~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~~~~G~~v----------~ 285 (333)
T PRK09814 217 PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVENGLGFVV----------D 285 (333)
T ss_pred HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHhCCceEEe----------C
Confidence 9999888888 766664321 35788999999999999999999999999999999976 4
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 007300 534 PVDVAAVSTTVRRALATYGTQALAEMMKNG 563 (609)
Q Consensus 534 ~~d~~~la~~I~~ll~~~~~~~~~~~~~~~ 563 (609)
+.+++++.|.++. .+.+.+|++++
T Consensus 286 --~~~el~~~l~~~~----~~~~~~m~~n~ 309 (333)
T PRK09814 286 --SLEELPEIIDNIT----EEEYQEMVENV 309 (333)
T ss_pred --CHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 7789999998853 34566666665
No 90
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.77 E-value=5.1e-17 Score=185.64 Aligned_cols=297 Identities=18% Similarity=0.223 Sum_probs=203.4
Q ss_pred ceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhH
Q 007300 227 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN 306 (609)
Q Consensus 227 DvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (609)
|+| ..||+|..++|.+++... +++++.|.+|-..+.. ..|..+ | ...
T Consensus 233 D~V-WVHDYHL~LlP~~LR~~~------p~~~IGfFlHiPFPs~----Eifr~L--P--------------------~r~ 279 (934)
T PLN03064 233 DVV-WCHDYHLMFLPKCLKEYN------SNMKVGWFLHTPFPSS----EIHRTL--P--------------------SRS 279 (934)
T ss_pred CEE-EEecchhhHHHHHHHHhC------CCCcEEEEecCCCCCh----HHHhhC--C--------------------cHH
Confidence 888 999999999999999874 7899999999654311 111111 0 123
Q ss_pred HHHHHhhcCCEEEeeCHHHHHHHhcccC--CCcc--chhhh---ccCCeeEecCCCCCCCcCCCCccccccccCcchhcc
Q 007300 307 WMKAGILESDMVLTVSPHYAQELVSGED--KGVE--LDNII---RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMD 379 (609)
Q Consensus 307 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~--~~~~~---~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~ 379 (609)
-+-.++..||.|-+.+..++..+.+... .|.+ ...+. +..++.++|-|||++.|...... .
T Consensus 280 elL~glL~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~------------~ 347 (934)
T PLN03064 280 ELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET------------P 347 (934)
T ss_pred HHHHHHhcCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcC------------h
Confidence 3455788999999999999998886321 1221 11111 12257788999999887543210 0
Q ss_pred cchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CC----eEEEEE-----eCCC--hhhHHHH
Q 007300 380 AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--EN----VQIIVL-----GTGK--KPMEKQL 446 (609)
Q Consensus 380 ~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~----~~lviv-----G~g~--~~~~~~l 446 (609)
........+++.++ ++.+|+.++|+++.||+...++|++++.+ |+ +.|+-+ ++++ ..++.++
T Consensus 348 ~v~~~~~~lr~~~~-----g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V 422 (934)
T PLN03064 348 QVQQHIKELKERFA-----GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQV 422 (934)
T ss_pred hHHHHHHHHHHHhC-----CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHH
Confidence 01112345667665 45799999999999999999999998754 44 334433 3332 2344556
Q ss_pred HHHHHhCCCc--------eEEEe-ecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCC----ceEEcCCCCccccc
Q 007300 447 EQLEILYPEK--------ARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT----VPIVASTGGLVDTV 513 (609)
Q Consensus 447 ~~l~~~~~~~--------v~~~~-~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~----PvI~s~~gg~~e~i 513 (609)
.++..+.+.+ |.+.. .++.+++..+|+.||++++||..||++++.+|||+|+. ++|.|..+|..+.+
T Consensus 423 ~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L 502 (934)
T PLN03064 423 HEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL 502 (934)
T ss_pred HHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh
Confidence 5555543311 22222 24677788899999999999999999999999999954 45558888888877
Q ss_pred ccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH--HHhhCCchHHHHHHHHHHHHHHH
Q 007300 514 EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG--MAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 514 ~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~--~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
+..++++ +|.|++++|++|.++|... .++..+..+.. ....+|+...++.+++-+.+...
T Consensus 503 --~~~AllV----------NP~D~~~vA~AI~~AL~M~-~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 503 --GAGAILV----------NPWNITEVAASIAQALNMP-EEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTVV 564 (934)
T ss_pred --CCceEEE----------CCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHh
Confidence 3357766 9999999999999999963 33333332222 35779999999998887776653
No 91
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.76 E-value=1e-16 Score=170.42 Aligned_cols=216 Identities=19% Similarity=0.142 Sum_probs=146.5
Q ss_pred hcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCC-CCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 313 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 313 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
..+|.++++|+..++.+.+ .|++++ ++.+++|++ |...+.+.. .....++++
T Consensus 140 ~~ad~~~~~s~~~~~~l~~---~G~~~~------~I~vign~~~d~~~~~~~~------------------~~~~~~~~~ 192 (365)
T TIGR00236 140 HIADLHFAPTEQAKDNLLR---ENVKAD------SIFVTGNTVIDALLTNVEI------------------AYSSPVLSE 192 (365)
T ss_pred HHHHhccCCCHHHHHHHHH---cCCCcc------cEEEeCChHHHHHHHHHhh------------------ccchhHHHh
Confidence 3589999999999999986 577766 899999996 432221110 002344555
Q ss_pred hCCCCCCCCcEEEEEe-ccc-cccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHH
Q 007300 392 VGLPVDRNIPVIGFIG-RLE-EQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 467 (609)
Q Consensus 392 ~gl~~~~~~~~i~~iG-rl~-~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~ 467 (609)
++. +.+++++.+ |.+ ..||++.+++|+.++.+ +++++++.|.+.....+.+.+.. ....++.+........
T Consensus 193 ~~~----~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 193 FGE----DKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHL-GDSKRVHLIEPLEYLD 267 (365)
T ss_pred cCC----CCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHh-CCCCCEEEECCCChHH
Confidence 552 224555555 543 45899999999999854 57899988655433333333322 2234577666666666
Q ss_pred HHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEc-CCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHH
Q 007300 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 546 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s-~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ 546 (609)
...+++.||+++.+| |..++|||++|+|||++ +.|+..+++.++ .+++ .+.|+++++++|.+
T Consensus 268 ~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~~l-----------v~~d~~~i~~ai~~ 330 (365)
T TIGR00236 268 FLNLAANSHLILTDS-----GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TNKL-----------VGTDKENITKAAKR 330 (365)
T ss_pred HHHHHHhCCEEEECC-----hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ceEE-----------eCCCHHHHHHHHHH
Confidence 667999999999887 66789999999999996 678888888866 4444 35799999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 007300 547 ALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 547 ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~ 581 (609)
++++ ++.+.+++++. ..|.-...+++..+.+
T Consensus 331 ll~~--~~~~~~~~~~~--~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 331 LLTD--PDEYKKMSNAS--NPYGDGEASERIVEEL 361 (365)
T ss_pred HHhC--hHHHHHhhhcC--CCCcCchHHHHHHHHH
Confidence 9987 66666665543 3333233444444433
No 92
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.74 E-value=4e-16 Score=154.22 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=170.6
Q ss_pred hhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 312 ILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 312 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
-..+|.+++.|.+...++.+. |+. ..+.+|+...+++.+ ...
T Consensus 220 G~~ad~vm~NssWT~nHI~qi--W~~--------~~~~iVyPPC~~e~l----------------------------ks~ 261 (465)
T KOG1387|consen 220 GSKADIVMTNSSWTNNHIKQI--WQS--------NTCSIVYPPCSTEDL----------------------------KSK 261 (465)
T ss_pred cccceEEEecchhhHHHHHHH--hhc--------cceeEEcCCCCHHHH----------------------------HHH
Confidence 347899999999999998863 332 267788877766533 222
Q ss_pred hCCCCCCCCcEEEEEeccccccCHH-HHHHHHhhccc------CCeEEEEEeCCC----hhhHHHHHHHHHhC--CCceE
Q 007300 392 VGLPVDRNIPVIGFIGRLEEQKGSD-ILAAAIPHFIK------ENVQIIVLGTGK----KPMEKQLEQLEILY--PEKAR 458 (609)
Q Consensus 392 ~gl~~~~~~~~i~~iGrl~~~Kg~~-~ll~a~~~l~~------~~~~lvivG~g~----~~~~~~l~~l~~~~--~~~v~ 458 (609)
.+- .+.+.+.++++|.+.|.|+.. +-++|+..... ++++|+|+|.-. .+.-+.++.++..+ +.++.
T Consensus 262 ~~t-e~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~ 340 (465)
T KOG1387|consen 262 FGT-EGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQ 340 (465)
T ss_pred hcc-cCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceE
Confidence 222 344568999999999999999 44555554443 479999999853 34556666666654 45777
Q ss_pred EEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcc-ccccc---CcceeEecccccccccCCC
Q 007300 459 GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV-DTVEE---GFTGFQMGSFSVDCEAVDP 534 (609)
Q Consensus 459 ~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~-e~i~~---~~~G~l~~~~~~~~~~v~~ 534 (609)
+....+.+++-.+|..|.+.+..-..|.||+.+.|+||+|+.+|+.+.||.. |+|.+ ..+||+.
T Consensus 341 F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla------------ 408 (465)
T KOG1387|consen 341 FEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLA------------ 408 (465)
T ss_pred EEecCCHHHHHHHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeec------------
Confidence 7777788888889999999999999999999999999999999999988854 67664 4689974
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhhCCchHHHHHHHHHHHHHHHc
Q 007300 535 VDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETLLNLEVA 587 (609)
Q Consensus 535 ~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~~~~l~~~ 587 (609)
.+.++.+++|.+++... .+.+..|.+++. ..+|+-...-+.|...+..++.+
T Consensus 409 ~t~~EYaE~iLkIv~~~-~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll~e 462 (465)
T KOG1387|consen 409 PTDEEYAEAILKIVKLN-YDERNMMRRNARKSLARFGELKFDKDWENPICKLLEE 462 (465)
T ss_pred CChHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhhcc
Confidence 67889999999999862 344555555553 57899999999999988888753
No 93
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1.3e-15 Score=156.96 Aligned_cols=223 Identities=28% Similarity=0.443 Sum_probs=169.0
Q ss_pred cCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhC
Q 007300 314 ESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVG 393 (609)
Q Consensus 314 ~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 393 (609)
..+.+++.+......+.. ... ..++..++|+++...+.+.. .+
T Consensus 150 ~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~---------------------------~~ 192 (381)
T COG0438 150 LADRVIAVSPALKELLEA---LGV-------PNKIVVIPNGIDTEKFAPAR---------------------------IG 192 (381)
T ss_pred cccEEEECCHHHHHHHHH---hCC-------CCCceEecCCcCHHHcCccc---------------------------cC
Confidence 478899999988665554 111 11678899999988776420 11
Q ss_pred CCCCCCCcEEEEEeccccccCHHHHHHHHhhcccC--CeEEEEEeCCChhhHHHHHHHHHhCC--CceEEEeecChHHHH
Q 007300 394 LPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE--NVQIIVLGTGKKPMEKQLEQLEILYP--EKARGVAKFNIPLAH 469 (609)
Q Consensus 394 l~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~~ 469 (609)
+..+.....++++||+.+.||++.+++++..+... ++.++++|.+... ...+..+..+.. .++.+.+..+.+...
T Consensus 193 ~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 271 (381)
T COG0438 193 LLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER-REELEKLAKKLGLEDNVKFLGYVPDEELA 271 (381)
T ss_pred CCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc-HHHHHHHHHHhCCCCcEEEecccCHHHHH
Confidence 11111136899999999999999999999999763 4899999998743 233333444432 356665555646666
Q ss_pred HHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 470 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 470 ~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
.+++.||++++||.+|++|++++|||++|+|||+++.++..+++.++.+|+++ .+.|++++++++..+++
T Consensus 272 ~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~----------~~~~~~~~~~~i~~~~~ 341 (381)
T COG0438 272 ELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLV----------PPGDVEELADALEQLLE 341 (381)
T ss_pred HHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEec----------CCCCHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999998778854 66689999999999998
Q ss_pred hhCHHHHHHHHH---HHHHhhCCchHHHHHHHHHHHHHHH
Q 007300 550 TYGTQALAEMMK---NGMAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 550 ~~~~~~~~~~~~---~~~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
+. +.+..+.+ +.....|+|+..++++.+++..+..
T Consensus 342 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 342 DP--ELREELGEAARERVEEEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred CH--HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 73 44444443 2334789999999999999988764
No 94
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.70 E-value=2.1e-15 Score=161.65 Aligned_cols=344 Identities=17% Similarity=0.194 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccc
Q 007300 196 NQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFE 275 (609)
Q Consensus 196 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~ 275 (609)
+...|.+.+..+++.+...... ++.||.|+|+|+++....+++... ..+.+|||.|.... ||+--
T Consensus 120 ea~~Fgyava~fi~~f~~~~~~-------~~~ViaHfHEWmaG~gll~lr~~~------~~VaTvFTTHAT~l-GR~l~- 184 (633)
T PF05693_consen 120 EAVMFGYAVAWFIEEFYKFYEE-------KPKVIAHFHEWMAGVGLLYLRKRK------PDVATVFTTHATLL-GRYLA- 184 (633)
T ss_dssp HHHHHHHHHHHHHHHHHHH-S--------SEEEEEEEESGGGTTHHHHHHHTT-------SCEEEEEESS-HH-HHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-------CCcEEEEechHhHhHHHHHHhccC------CCeeEEEEecccch-hhHhh-
Confidence 3445556666666555554321 478999999999999888888754 69999999997544 33210
Q ss_pred cccccCCccccccccccccC---CCCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEec
Q 007300 276 DFGLLNLPAQFKSSFDFIDG---YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIV 352 (609)
Q Consensus 276 ~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~ 352 (609)
+-...++..+...++ ..+.-...+..+++.....||.+.|||+-++.+.... .+.. .=.|+|
T Consensus 185 -----~~~~~~Y~~L~~~~~d~eA~~~~i~~k~~iEraaA~~AdvFTTVSeITa~Ea~~L--L~r~--------pDvV~p 249 (633)
T PF05693_consen 185 -----ANNKDFYNNLDKFNGDQEAGERNIYHKHSIERAAAHYADVFTTVSEITAKEAEHL--LKRK--------PDVVTP 249 (633)
T ss_dssp -----TTSS-TTTSGTTS-HHHHHHHTT-HHHHHHHHHHHHHSSEEEESSHHHHHHHHHH--HSS----------SEE--
T ss_pred -----cCCCcHHHHhhccCccccccCccchHHHHHHHHHHHhcCeeeehhhhHHHHHHHH--hCCC--------CCEEcC
Confidence 001111111111000 0000011234566788889999999999998887631 2222 336789
Q ss_pred CCCCCCCcCCCCccccccccCcchhcccchHHHHHH----HHH-hCC-CCC-CCCcEEEEEeccc-cccCHHHHHHHHhh
Q 007300 353 NGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL----QAE-VGL-PVD-RNIPVIGFIGRLE-EQKGSDILAAAIPH 424 (609)
Q Consensus 353 nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~gl-~~~-~~~~~i~~iGrl~-~~Kg~~~ll~a~~~ 424 (609)
||+|...+..... | ..-....|+.+ +.. +|- .-+ ++..+|..+||.+ ..||+|.+|+|+.+
T Consensus 250 NGl~v~~~~~~~e------f-----qnl~~~~k~ki~~fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~r 318 (633)
T PF05693_consen 250 NGLNVDKFPALHE------F-----QNLHAKAKEKIHEFVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALAR 318 (633)
T ss_dssp --B-GGGTSSTTH------H-----HHHHHHHHHHHHHHHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHH
T ss_pred CCccccccccchH------H-----HHHHHHHHHHHHHHHHHHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHH
Confidence 9999887754321 0 00011223322 322 232 112 2456788999999 79999999999999
Q ss_pred ccc------CCeE---EEEEeCCC--------------hhh---------------------------------------
Q 007300 425 FIK------ENVQ---IIVLGTGK--------------KPM--------------------------------------- 442 (609)
Q Consensus 425 l~~------~~~~---lvivG~g~--------------~~~--------------------------------------- 442 (609)
|.. .+.. |+|+=... +.+
T Consensus 319 Ln~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~l 398 (633)
T PF05693_consen 319 LNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGRLPDLNELLDKEDIVRL 398 (633)
T ss_dssp HHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SHHHCS-HHHHHHH
T ss_pred HHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhcChhhHHHH
Confidence 843 2333 44442210 000
Q ss_pred ----------------------------HHHHHHHHHh--CCC--ceEEEeec-C------hHHHHHHHHhCcEEEecCC
Q 007300 443 ----------------------------EKQLEQLEIL--YPE--KARGVAKF-N------IPLAHMIIAGADFILIPSR 483 (609)
Q Consensus 443 ----------------------------~~~l~~l~~~--~~~--~v~~~~~~-~------~~~~~~~l~~aDv~v~pS~ 483 (609)
...++++... ..+ +|.++..| + .-...+++.+||+.|+||.
T Consensus 399 kr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvFPSY 478 (633)
T PF05693_consen 399 KRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVFPSY 478 (633)
T ss_dssp HHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE--S
T ss_pred HHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeeeccc
Confidence 0012221111 111 34444444 1 1123368999999999999
Q ss_pred CCCCcHHHHHHHHcCCceEEcCCCCccccccc-----CcceeEecccccccccCCCCCHHHHHHHHHHHHHhhC---HHH
Q 007300 484 FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE-----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG---TQA 555 (609)
Q Consensus 484 ~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~-----~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~---~~~ 555 (609)
+|++|.+-+|+.++|+|.|+|+..|+...+.+ ...|+.+=. -...+.++.++.|.+.+.++- ..+
T Consensus 479 YEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~Vvd-------R~~~n~~e~v~~la~~l~~f~~~~~rq 551 (633)
T PF05693_consen 479 YEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVD-------RRDKNYDESVNQLADFLYKFCQLSRRQ 551 (633)
T ss_dssp SBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE--------SSSS-HHHHHHHHHHHHHHHHT--HHH
T ss_pred cccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEe-------CCCCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999997766653 234554300 033456777777666665441 222
Q ss_pred HHHHHHHH--HHhhCCchHHHHHHHHHHHHHHHc
Q 007300 556 LAEMMKNG--MAQDLSWKGPAKKWEETLLNLEVA 587 (609)
Q Consensus 556 ~~~~~~~~--~~~~fs~~~~a~~~~~~~~~l~~~ 587 (609)
+..+..++ +.+.++|+.+...|.+.|..++..
T Consensus 552 ri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~~ 585 (633)
T PF05693_consen 552 RIIQRNRAERLSDLADWKNFGKYYEKAYDLALRR 585 (633)
T ss_dssp HHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 22222222 578899999999999999988764
No 95
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.4e-14 Score=141.88 Aligned_cols=301 Identities=17% Similarity=0.193 Sum_probs=191.4
Q ss_pred CCceEEEecccccc--hHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCC
Q 007300 225 PYDVVFVANDWHTS--LIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRG 302 (609)
Q Consensus 225 ~pDvV~h~h~~~~~--~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 302 (609)
++|+|++-| .++. ++.+++... +++++.+...||..|.-. +.+..+...++..
T Consensus 103 ~~~~ilvQN-PP~iPtliv~~~~~~------l~~~KfiIDWHNy~Ysl~------------------l~~~~g~~h~lV~ 157 (444)
T KOG2941|consen 103 PPDIILVQN-PPSIPTLIVCVLYSI------LTGAKFIIDWHNYGYSLQ------------------LKLKLGFQHPLVR 157 (444)
T ss_pred CCcEEEEeC-CCCCchHHHHHHHHH------HhcceEEEEehhhHHHHH------------------HHhhcCCCCchHH
Confidence 589995444 3322 233333333 379999999999877300 0011122223333
Q ss_pred chhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCC-----CCCCC----cCCCCccccccccC
Q 007300 303 RKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-----MDVQE----WNPLTDKYIGVKYD 373 (609)
Q Consensus 303 ~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nG-----vd~~~----~~p~~~~~~~~~~~ 373 (609)
.....++..-+.||.-+||++.+++++.+. +|+. ++.+++.- .++++ |-+.... ..+|-
T Consensus 158 l~~~~E~~fgk~a~~nLcVT~AMr~dL~qn--Wgi~--------ra~v~YDrPps~~~~l~~~H~lf~~l~~d--~~~f~ 225 (444)
T KOG2941|consen 158 LVRWLEKYFGKLADYNLCVTKAMREDLIQN--WGIN--------RAKVLYDRPPSKPTPLDEQHELFMKLAGD--HSPFR 225 (444)
T ss_pred HHHHHHHHhhcccccchhhHHHHHHHHHHh--cCCc--------eeEEEecCCCCCCCchhHHHHHHhhhccc--cchhh
Confidence 344556677788999999999999999863 7765 34444421 11111 1111100 00011
Q ss_pred cchhcccchHHHHHHHHHhC---CCCCCCC-cEEEEEeccccccCHHHHHHHHhhccc---------CCeEEEEEeCCCh
Q 007300 374 ASTVMDAKPLLKEALQAEVG---LPVDRNI-PVIGFIGRLEEQKGSDILAAAIPHFIK---------ENVQIIVLGTGKK 440 (609)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~g---l~~~~~~-~~i~~iGrl~~~Kg~~~ll~a~~~l~~---------~~~~lvivG~g~~ 440 (609)
....+.+..+..++-++.. ....++. .+++..-.+++..++.+|++|+....+ |++-.+|.|.|+
T Consensus 226 -ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGP- 303 (444)
T KOG2941|consen 226 -AREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGP- 303 (444)
T ss_pred -hcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCc-
Confidence 1123445555555554443 1111122 467778889999999999999984421 567778888888
Q ss_pred hhHHHHHHHHHhCC-CceEEEe-ecChHHHHHHHHhCcEEEe--cCCC-CCCcHHHHHHHHcCCceEEcCCCCccccccc
Q 007300 441 PMEKQLEQLEILYP-EKARGVA-KFNIPLAHMIIAGADFILI--PSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 515 (609)
Q Consensus 441 ~~~~~l~~l~~~~~-~~v~~~~-~~~~~~~~~~l~~aDv~v~--pS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~ 515 (609)
+++...+...+++ .++.+.. +...++.+.+++.||+.|. +|.. -..|++++....||+||++-+...+.|+|++
T Consensus 304 -lkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh 382 (444)
T KOG2941|consen 304 -LKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKH 382 (444)
T ss_pred -hhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhc
Confidence 4444444444433 2344443 4477888899999998665 4433 3589999999999999999999999999999
Q ss_pred CcceeEecccccccccCCCCCHHHHHHHHHHHHHhhC--HHHHHHHHHHHH-HhhCCchHHHHHH
Q 007300 516 GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG--TQALAEMMKNGM-AQDLSWKGPAKKW 577 (609)
Q Consensus 516 ~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~--~~~~~~~~~~~~-~~~fs~~~~a~~~ 577 (609)
++||++| .|.+++++.+..++.+.. ...+.+..++.. .+...|+..-++.
T Consensus 383 ~eNGlvF------------~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 383 GENGLVF------------EDSEELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDESWERT 435 (444)
T ss_pred CCCceEe------------ccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHHHHHh
Confidence 9999998 899999999999999653 356666666665 3567776554443
No 96
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.58 E-value=6.1e-15 Score=133.36 Aligned_cols=130 Identities=29% Similarity=0.378 Sum_probs=94.2
Q ss_pred CcEEEEEeccccccCHHHHHH-HHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCc
Q 007300 400 IPVIGFIGRLEEQKGSDILAA-AIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 400 ~~~i~~iGrl~~~Kg~~~ll~-a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 476 (609)
.++|+++|++.+.|+++.+++ +++++.+ ++++|+|+|.+++ +++++ .. .++.+++.. +++..+++.||
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~----~l~~~-~~--~~v~~~g~~--~e~~~~l~~~d 72 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD----ELKRL-RR--PNVRFHGFV--EELPEILAAAD 72 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-----HHCCH-HH--CTEEEE-S---HHHHHHHHC-S
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH----HHHHh-cC--CCEEEcCCH--HHHHHHHHhCC
Confidence 368999999999999999999 9999865 7899999999875 25555 22 258877766 46778999999
Q ss_pred EEEecCC-CCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 477 FILIPSR-FEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 477 v~v~pS~-~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
+++.|+. .++++.+++|||++|+|||+++. +..+++.....|.. -.+|+++++++|.++++|
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~-----------~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVL-----------VANDPEELAEAIERLLND 135 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE------------TT-HHHHHHHHHHHHH-
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEE-----------ECCCHHHHHHHHHHHhcC
Confidence 9999997 47899999999999999999998 66777765556664 378999999999999875
No 97
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.58 E-value=1.2e-12 Score=139.85 Aligned_cols=191 Identities=15% Similarity=0.075 Sum_probs=121.0
Q ss_pred HHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHH
Q 007300 309 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 388 (609)
Q Consensus 309 k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (609)
+...+.+|.|++.++...+.+.+ .|. ++.++.|++......... .+...
T Consensus 133 r~l~~~~d~v~~~~~~e~~~~~~---~g~---------~~~~vGnPv~~~~~~~~~-------------------~~~~~ 181 (385)
T TIGR00215 133 KKIEKATDFLLAILPFEKAFYQK---KNV---------PCRFVGHPLLDAIPLYKP-------------------DRKSA 181 (385)
T ss_pred HHHHHHHhHhhccCCCcHHHHHh---cCC---------CEEEECCchhhhccccCC-------------------CHHHH
Confidence 44567899999999999888764 232 455677776322111001 14556
Q ss_pred HHHhCCCCCCCCcEEEEEe--cccc-ccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhC--CCceEEEe
Q 007300 389 QAEVGLPVDRNIPVIGFIG--RLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILY--PEKARGVA 461 (609)
Q Consensus 389 ~~~~gl~~~~~~~~i~~iG--rl~~-~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~--~~~v~~~~ 461 (609)
++++|++.+ .++|++.| |..+ .|++..++++++.+.+ +++++++.+.+.. ..+.++++...+ +..+..+
T Consensus 182 r~~lgl~~~--~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-~~~~~~~~~~~~~~~~~v~~~- 257 (385)
T TIGR00215 182 REKLGIDHN--GETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-RRLQFEQIKAEYGPDLQLHLI- 257 (385)
T ss_pred HHHcCCCCC--CCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-hHHHHHHHHHHhCCCCcEEEE-
Confidence 778888654 47776553 6666 7899999999999865 5788877554321 334444444443 2233322
Q ss_pred ecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC-CCC----------------cccccccCcceeEecc
Q 007300 462 KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS-TGG----------------LVDTVEEGFTGFQMGS 524 (609)
Q Consensus 462 ~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~-~gg----------------~~e~i~~~~~G~l~~~ 524 (609)
.. ....+|+.||++|.+| |.+.+|+|++|+|+|... ++. ++.++.+..-..-+
T Consensus 258 --~~-~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel-- 327 (385)
T TIGR00215 258 --DG-DARKAMFAADAALLAS-----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPEL-- 327 (385)
T ss_pred --Cc-hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhh--
Confidence 12 3346999999999999 888889999999998883 111 22222221111110
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHh
Q 007300 525 FSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 525 ~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
.-+.-+++.+++.+.+++.+
T Consensus 328 ------~q~~~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 328 ------LQEECTPHPLAIALLLLLEN 347 (385)
T ss_pred ------cCCCCCHHHHHHHHHHHhcC
Confidence 11445789999999999987
No 98
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.50 E-value=4.2e-12 Score=137.59 Aligned_cols=295 Identities=18% Similarity=0.200 Sum_probs=171.4
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
-|+| ..||+|..++|.+++... +++++.|.+|-+.+.. ..+..+ ...
T Consensus 142 ~D~V-WVhDYhL~llP~~LR~~~------~~~~IgfFlHiPFPs~--------------e~fr~l------------P~r 188 (474)
T PF00982_consen 142 GDLV-WVHDYHLMLLPQMLRERG------PDARIGFFLHIPFPSS--------------EIFRCL------------PWR 188 (474)
T ss_dssp T-EE-EEESGGGTTHHHHHHHTT--------SEEEEEE-S----H--------------HHHTTS------------TTH
T ss_pred CCEE-EEeCCcHHHHHHHHHhhc------CCceEeeEEecCCCCH--------------HHHhhC------------CcH
Confidence 4888 999999999999999875 7899999999644311 111111 012
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccchhh-------hccCCeeEecCCCCCCCcCCCCccccccccCcch
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELDNI-------IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAST 376 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~~~-------~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~ 376 (609)
..+-.++..||.|-+.+..+++.+.+... .|.+.... -+...+.+.|-|||++.+.....
T Consensus 189 ~eiL~glL~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~----------- 257 (474)
T PF00982_consen 189 EEILRGLLGADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLAR----------- 257 (474)
T ss_dssp HHHHHHHTTSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-----------
T ss_pred HHHHHHhhcCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhcc-----------
Confidence 44556788999999999999998876321 22221110 01235777888888776632110
Q ss_pred hcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCC----h---hhH
Q 007300 377 VMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----K---PME 443 (609)
Q Consensus 377 ~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~----~---~~~ 443 (609)
.+.-......++++++- +.++|+-+.|++..||+..=++|+.++.+ .++.|+-++... + .+.
T Consensus 258 -~~~v~~~~~~l~~~~~~----~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~ 332 (474)
T PF00982_consen 258 -SPEVQERAEELREKFKG----KRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELR 332 (474)
T ss_dssp --S---HHHHHHHHHTTT-----SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHH
T ss_pred -ChHHHHHHHHHHHhcCC----CcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHH
Confidence 00111224557777651 24799999999999999999999999865 368888776532 2 344
Q ss_pred HHHHHHHH----hCCC----ceEEEe-ecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCc----eEEcCCCCcc
Q 007300 444 KQLEQLEI----LYPE----KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV----PIVASTGGLV 510 (609)
Q Consensus 444 ~~l~~l~~----~~~~----~v~~~~-~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~P----vI~s~~gg~~ 510 (609)
++++++.. +++. -|.++. ..+.++...+|+.||+++++|..+|..++..|+.+|... +|.|...|..
T Consensus 333 ~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa 412 (474)
T PF00982_consen 333 REVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAA 412 (474)
T ss_dssp HHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGG
T ss_pred HHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHH
Confidence 55555544 3331 133333 356677778999999999999999999999999998655 7888888888
Q ss_pred cccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH-HHhhCCchHHHHHHHHHH
Q 007300 511 DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 511 e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fs~~~~a~~~~~~~ 581 (609)
+.+.++. +++ +|.|++++|++|.++|+.+..++..++.+.. ....++...-++.+++-+
T Consensus 413 ~~L~~~a--l~V----------NP~d~~~~A~ai~~AL~M~~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 413 EQLSEAA--LLV----------NPWDIEEVADAIHEALTMPPEERKERHARLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp GT-TTS---EEE-----------TT-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHcCCcc--EEE----------CCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHhHhCCHHHHHHHHHHHh
Confidence 8886542 444 9999999999999999985334444433322 345667666666665544
No 99
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.49 E-value=1.2e-12 Score=143.76 Aligned_cols=212 Identities=12% Similarity=0.052 Sum_probs=156.1
Q ss_pred HhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHH
Q 007300 311 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 390 (609)
Q Consensus 311 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (609)
.+..+|.+|+.++...+.+...... .+ ...++..||.+.- ... +.
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~-~~-----~~~~v~~Ip~~~~-~~~-~~--------------------------- 313 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYRE-NY-----VEFDISRITPFDT-RLR-LG--------------------------- 313 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhh-cc-----cCCcceeeCccce-EEe-cC---------------------------
Confidence 4668899999998877777642110 00 0114556664432 111 11
Q ss_pred HhCCCCCCCCcEEEEEe--ccccccCHHHHHHHHhhccc--CCeEEEEEeCCCh-hhHHHHHHHHHhCC-----------
Q 007300 391 EVGLPVDRNIPVIGFIG--RLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKK-PMEKQLEQLEILYP----------- 454 (609)
Q Consensus 391 ~~gl~~~~~~~~i~~iG--rl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~-~~~~~l~~l~~~~~----------- 454 (609)
. .++....+++++ |+ +.|.++.+++++.++.. |+++|.+.|.+.+ .+.+.++++..+++
T Consensus 314 ---~-s~r~~~~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 388 (519)
T TIGR03713 314 ---Q-SQQLYETEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFS 388 (519)
T ss_pred ---h-hhcccceEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccc
Confidence 1 112334678888 99 99999999999999954 8999999998863 34444444433221
Q ss_pred --------------------CceEEEeec-ChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccccc
Q 007300 455 --------------------EKARGVAKF-NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 513 (609)
Q Consensus 455 --------------------~~v~~~~~~-~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i 513 (609)
..|.+ ..+ +..++...|..+.++|.+|..|+++ +++||+++|+|+| .-|..++|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~v~f-~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V 463 (519)
T TIGR03713 389 LSEQDENQPILQTDEEQKEKERIAF-TTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYV 463 (519)
T ss_pred cchhhhhhhcccchhhcccccEEEE-EecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceee
Confidence 22333 333 3336668999999999999999999 9999999999999 55679999
Q ss_pred ccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HhhCCchHHHHHHHHHH
Q 007300 514 EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM--AQDLSWKGPAKKWEETL 581 (609)
Q Consensus 514 ~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~--~~~fs~~~~a~~~~~~~ 581 (609)
.+++||+++ +|..+|+++|..+|.+ ...+.++...++ .++||-+.+.++|.+++
T Consensus 464 ~d~~NG~li------------~d~~~l~~al~~~L~~--~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~~ 519 (519)
T TIGR03713 464 EHNKNGYII------------DDISELLKALDYYLDN--LKNWNYSLAYSIKLIDDYSSENIIERLNELI 519 (519)
T ss_pred EcCCCcEEe------------CCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhC
Confidence 999999985 8999999999999998 778888887774 68999999999998864
No 100
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.49 E-value=2.8e-12 Score=137.28 Aligned_cols=296 Identities=15% Similarity=0.122 Sum_probs=204.1
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
-|+| -.||+|..++|.+++... ++.++.|.+|-+.+.. ..|..+ | ..
T Consensus 124 ~D~V-WVHDYhL~llp~~LR~~~------~~~~IgFFlHiPFPs~----eifr~L--P--------------------~r 170 (474)
T PRK10117 124 DDII-WIHDYHLLPFASELRKRG------VNNRIGFFLHIPFPTP----EIFNAL--P--------------------PH 170 (474)
T ss_pred CCEE-EEeccHhhHHHHHHHHhC------CCCcEEEEEeCCCCCh----HHHhhC--C--------------------Ch
Confidence 3888 999999999999999875 7899999999644311 111111 0 11
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccch--hhh----ccCCeeEecCCCCCCCcCCCCccccccccCcchh
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD--NII----RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 377 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~--~~~----~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~ 377 (609)
.-+-.++..+|.|-+.+..+++.+.+... .|.+.. ..+ +...+.+.|-|||++.|......
T Consensus 171 ~eil~glL~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~----------- 239 (474)
T PRK10117 171 DELLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAG----------- 239 (474)
T ss_pred HHHHHHHHhCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhc-----------
Confidence 33455788999999999999988876221 122110 001 22357778899998776432110
Q ss_pred cccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCC-------hhhHH
Q 007300 378 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK-------KPMEK 444 (609)
Q Consensus 378 ~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~-------~~~~~ 444 (609)
. .......+++.++ ++.+|+-+.|++.-||+..=++|++.+.+ .++.|+-+.... ..+..
T Consensus 240 -~-~~~~~~~lr~~~~-----~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~ 312 (474)
T PRK10117 240 -P-LPPKLAQLKAELK-----NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRH 312 (474)
T ss_pred -h-HHHHHHHHHHHcC-----CCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCCccHHHHHHHH
Confidence 0 0112345566654 45799999999999999999999999876 267787676543 24556
Q ss_pred HHHHHHHhCCCc--------eEEE-eecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCC-----ceEEcCCCCcc
Q 007300 445 QLEQLEILYPEK--------ARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-----VPIVASTGGLV 510 (609)
Q Consensus 445 ~l~~l~~~~~~~--------v~~~-~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~-----PvI~s~~gg~~ 510 (609)
+++++..+.+++ |.+. -.++.+++-.+|..||+++++|..+|+.++..|+.+|-. +.|.|...|..
T Consensus 313 ~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~GvLILSefAGaA 392 (474)
T PRK10117 313 QLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAA 392 (474)
T ss_pred HHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCCccEEEecccchH
Confidence 666665543211 2211 124667777899999999999999999999999999965 37888888888
Q ss_pred cccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH-HHhhCCchHHHHHHHHHHHHHH
Q 007300 511 DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 511 e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
+.+.+ .++ |+|.|.+++|++|.++|..+..++..++.+.. ....++...-++.+++-+.++.
T Consensus 393 ~~L~~---All----------VNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~~ 455 (474)
T PRK10117 393 NELTS---ALI----------VNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQIV 455 (474)
T ss_pred HHhCC---CeE----------ECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhh
Confidence 87743 454 49999999999999999986445555554322 3566787777888777776654
No 101
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.42 E-value=9.4e-13 Score=123.64 Aligned_cols=176 Identities=23% Similarity=0.305 Sum_probs=94.2
Q ss_pred EEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEEE
Q 007300 87 ILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVF 166 (609)
Q Consensus 87 Il~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 166 (609)
|+++...+ +. .||++.++.+|+++|+++||+|+++++......... ... ..
T Consensus 1 ili~~~~~-~~--~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~---------------~~~-----------~~ 51 (177)
T PF13439_consen 1 ILITNIFL-PN--IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE---------------LVK-----------IF 51 (177)
T ss_dssp -EEECC-T-TS--SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST---------------EEE-----------E-
T ss_pred CEEEEecC-CC--CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh---------------ccc-----------ee
Confidence 45555554 43 799999999999999999999999998754332210 000 00
Q ss_pred EeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHHH
Q 007300 167 VDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKT 246 (609)
Q Consensus 167 v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~~ 246 (609)
...+.. ..............+.+.++.. +|||| |+|.+..........
T Consensus 52 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~i~~~----------~~DiV-h~~~~~~~~~~~~~~- 99 (177)
T PF13439_consen 52 VKIPYP--------------------IRKRFLRSFFFMRRLRRLIKKE----------KPDIV-HIHGPPAFWIALLAC- 99 (177)
T ss_dssp --TT-S--------------------STSS--HHHHHHHHHHHHHHHH----------T-SEE-ECCTTHCCCHHHHHH-
T ss_pred eeeecc--------------------cccccchhHHHHHHHHHHHHHc----------CCCeE-EecccchhHHHHHhc-
Confidence 000000 0111112223344455555555 49999 999876655443333
Q ss_pred hhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHHH
Q 007300 247 MYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYA 326 (609)
Q Consensus 247 ~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~ 326 (609)
.++|+++++|+..+...+ ...... +.......+++...+.+|.++++|+..+
T Consensus 100 --------~~~~~v~~~H~~~~~~~~-------~~~~~~-------------~~~~~~~~~~~~~~~~~~~ii~vS~~~~ 151 (177)
T PF13439_consen 100 --------RKVPIVYTIHGPYFERRF-------LKSKLS-------------PYSYLNFRIERKLYKKADRIIAVSESTK 151 (177)
T ss_dssp --------HCSCEEEEE-HHH--HHT-------TTTSCC-------------CHHHHHHCTTHHHHCCSSEEEESSHHHH
T ss_pred --------cCCCEEEEeCCCcccccc-------cccccc-------------hhhhhhhhhhhhHHhcCCEEEEECHHHH
Confidence 278999999975531000 000000 0000111223445788999999999999
Q ss_pred HHHhcccCCCccchhhhccCCeeEecCCCCCCCc
Q 007300 327 QELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEW 360 (609)
Q Consensus 327 ~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~ 360 (609)
+++.+ +|++.+ ++.+||||+|.+.|
T Consensus 152 ~~l~~---~~~~~~------ki~vI~ngid~~~F 176 (177)
T PF13439_consen 152 DELIK---FGIPPE------KIHVIYNGIDTDRF 176 (177)
T ss_dssp HHHHH---HT--SS-------EEE----B-CCCH
T ss_pred HHHHH---hCCccc------CCEEEECCccHHHc
Confidence 99996 666554 99999999999877
No 102
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=5.9e-12 Score=139.19 Aligned_cols=435 Identities=20% Similarity=0.247 Sum_probs=267.9
Q ss_pred CccccchHHHHhhchhHHHHhCCCeEEEEeecCCC-cc-------------ccCCC------------ceE--EEEEeCC
Q 007300 96 PWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ-YK-------------DAWDT------------DVV--IELKVGD 147 (609)
Q Consensus 96 P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~-~~-------------~~~~~------------~~~--~~~~~~~ 147 (609)
|-. .||+|+........++..|...+.++..|.+ +. +.|.. ... ..+...+
T Consensus 111 p~l-gGGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~~a~~~d~~V~g~~ 189 (750)
T COG0058 111 PGL-GGGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELPDEWLKYGNPWEFLRDAEGVPYDVPVPGYD 189 (750)
T ss_pred ccc-cccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecchhhhccCCcceeecccCCceeeeeEEecc
Confidence 533 4999999999999999999999999988753 11 11211 012 2333333
Q ss_pred -EEeeEEEEEeeEcCeeEEEEeCcchhhhhc-CCCCCeeccCCCCCCCcchHHHH---HHHHHHHHHhhhhhc-cCCCCC
Q 007300 148 -KIEKVRFFHCHKRGVDRVFVDHPWFLAKVW-GKTQSKIYGPRTGEDYQDNQLRF---SLLCQAALEAPRILN-LNSNKY 221 (609)
Q Consensus 148 -~~~~~~~~~~~~~gv~~~~v~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~r~---~~~~~~~~~~~~~~~-~~~~~~ 221 (609)
...+++.|......+++++.+...--.+-| ...-..+|+.++ +.+|+ .+|+.+.++.+.... ....
T Consensus 190 ~~~~~lrlW~a~~~~~~~~l~~~n~~e~~~~~~~iT~~LYp~Ds------~elRl~Qeyfl~~agvq~I~~~~~~~~~-- 261 (750)
T COG0058 190 NRVVTLRLWQAQVGRVPLYLLDFNVGENKNDARNITRVLYPGDS------KELRLKQEYFLGSAGVQDILARGHLEHH-- 261 (750)
T ss_pred CcEEEEEEEEEecCccceEeecCCCcccchhhhhHHhhcCCCCc------HHHHHhhhheeeeHHHHHHHHHhhhccc--
Confidence 556778888777777888776432111111 012236776443 33343 345666666655542 1000
Q ss_pred CCCCCceEEEecccccchHHH-HHHHhhcCCCc-------ccCceEEEEEecCccCCc--cccccccccCCcccccccc-
Q 007300 222 FSGPYDVVFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFGLLNLPAQFKSSF- 290 (609)
Q Consensus 222 ~~~~pDvV~h~h~~~~~~~~~-~l~~~~~~~~~-------~~~~~~v~~iH~~~~~~~--~~~~~~~~l~~~~~~~~~~- 290 (609)
. -...++|.||-|.+++.. +++...-..++ ....-++||.|.+.+.+. |+...+..+. |..+.--.
T Consensus 262 -~-~~~~~~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~l-pr~~~ii~~ 338 (750)
T COG0058 262 -D-LDVLADHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLL-PRHLQIIYE 338 (750)
T ss_pred -c-ccchhhhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHh-hhhhhhHHH
Confidence 0 013334889988877644 44423222222 134578999999877653 4443332211 10000000
Q ss_pred ---ccccCC-----------CCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhccc---CCCccchhhhccCCeeEecC
Q 007300 291 ---DFIDGY-----------NKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKGIVN 353 (609)
Q Consensus 291 ---~~~~~~-----------~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~---~~g~~~~~~~~~~~i~vI~n 353 (609)
.|.... ..+... +++--.++..|..+..||.-..+.+++.. ..++.+ .+|.-+.|
T Consensus 339 in~~~l~~~~~~~~~~~~~~~~~i~~--v~Ma~lal~~S~~vNGVsklH~el~k~~~~~~~~~~~p------~~i~nvTN 410 (750)
T COG0058 339 INARFLPEVRLLYLGDLIRRGSPIEE--VNMAVLALVGSHSVNGVSKLHSELSKKMWFADFHGLYP------EKINNVTN 410 (750)
T ss_pred HHhhhhHHHHhhccccccccCCcccc--eehhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcccCc------cccccccC
Confidence 000000 000000 45555677888899999998877765532 122223 38999999
Q ss_pred CCCCCCcCCCCccccccccCcc--------------------------hhcccchHHHH----HHHHHhCCCCCCCCcEE
Q 007300 354 GMDVQEWNPLTDKYIGVKYDAS--------------------------TVMDAKPLLKE----ALQAEVGLPVDRNIPVI 403 (609)
Q Consensus 354 Gvd~~~~~p~~~~~~~~~~~~~--------------------------~~~~~~~~~~~----~~~~~~gl~~~~~~~~i 403 (609)
||....|--...+-+...++.. .+...|...+. ....+.|+..+++...+
T Consensus 411 GIt~rrWl~~~n~~L~~~~~~~ig~~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~i~~~~gi~~~p~~lfd 490 (750)
T COG0058 411 GITPRRWLAPANPGLADLLDEKIGDEWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEEIADRTGIEVDPNALFD 490 (750)
T ss_pred CcCCchhhhhhhHHHHHHHhhhhhhhhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCccCCCccee
Confidence 9999988655444444444443 12233333332 23445678888899999
Q ss_pred EEEeccccccCHHHHHHHHhhc----cc---CCeEEEEEeCCC------hhhHHHHHHHHHhCC--CceEEEeecChHHH
Q 007300 404 GFIGRLEEQKGSDILAAAIPHF----IK---ENVQIIVLGTGK------KPMEKQLEQLEILYP--EKARGVAKFNIPLA 468 (609)
Q Consensus 404 ~~iGrl~~~Kg~~~ll~a~~~l----~~---~~~~lvivG~g~------~~~~~~l~~l~~~~~--~~v~~~~~~~~~~~ 468 (609)
+++-|+.++|.+.+.+.-+..+ ++ +.+++++.|.-. +.+.+.+...+...+ .+|+++..|+...+
T Consensus 491 ~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvslA 570 (750)
T COG0058 491 GQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSLA 570 (750)
T ss_pred eeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhHH
Confidence 9999999999887765544443 32 468888888754 344555556555433 46899999999999
Q ss_pred HHHHHhCcEEEecCCC--CCCcHHHHHHHHcCCceEEcCCCCcccccc--cCcceeEeccccccccc-----CCCC-CHH
Q 007300 469 HMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVE--EGFTGFQMGSFSVDCEA-----VDPV-DVA 538 (609)
Q Consensus 469 ~~~l~~aDv~v~pS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~i~--~~~~G~l~~~~~~~~~~-----v~~~-d~~ 538 (609)
..++.+||+-...|+. |++|.+-+-+|..|.+-|+|--|...|+.+ ++.|||+||....+.+. .++. +..
T Consensus 571 ~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG~~~~~v~~~~~~~~~~~~~y~ 650 (750)
T COG0058 571 ELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFGETVEEVDALRADGYDPNALYY 650 (750)
T ss_pred HhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeCCchhhHHHHHhcccccHHHHH
Confidence 9999999999998875 999999999999999999999999999997 88999999865543222 2222 444
Q ss_pred HHHHHHHHHHHh
Q 007300 539 AVSTTVRRALAT 550 (609)
Q Consensus 539 ~la~~I~~ll~~ 550 (609)
.+...|..+++.
T Consensus 651 ~~~~~v~~~~~~ 662 (750)
T COG0058 651 ELENEVKPVLDE 662 (750)
T ss_pred HHhHHHHHHHHH
Confidence 555566666653
No 103
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.37 E-value=8.1e-11 Score=135.81 Aligned_cols=299 Identities=14% Similarity=0.156 Sum_probs=201.7
Q ss_pred ceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhH
Q 007300 227 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN 306 (609)
Q Consensus 227 DvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (609)
|+| ..||+|..++|.+|+... +++++.|.+|-+.+.. ..+..+. ...
T Consensus 203 d~V-WVhDYhL~llP~~LR~~~------~~~~IgfFlHiPFPs~--------------eifr~LP------------~r~ 249 (854)
T PLN02205 203 DFV-WIHDYHLMVLPTFLRKRF------NRVKLGFFLHSPFPSS--------------EIYKTLP------------IRE 249 (854)
T ss_pred CEE-EEeCchhhHHHHHHHhhC------CCCcEEEEecCCCCCh--------------HHHhhCC------------cHH
Confidence 888 999999999999998874 7899999999654311 1111110 123
Q ss_pred HHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccchh------h---hccCCeeEecCCCCCCCcCCCCccccccccCcc
Q 007300 307 WMKAGILESDMVLTVSPHYAQELVSGED--KGVELDN------I---IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDAS 375 (609)
Q Consensus 307 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~~------~---~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~ 375 (609)
-+-.++..||.|-+.+..+++.+.+... .|.+.+. + -+..++.+.|-|||+..|......
T Consensus 250 eiL~glL~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~--------- 320 (854)
T PLN02205 250 ELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSL--------- 320 (854)
T ss_pred HHHHHHhcCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcC---------
Confidence 3456788999999999999998887321 1322111 0 023357778889998776432110
Q ss_pred hhcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--C----CeEEEEEeCCC-------hhh
Q 007300 376 TVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--E----NVQIIVLGTGK-------KPM 442 (609)
Q Consensus 376 ~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~----~~~lvivG~g~-------~~~ 442 (609)
........+++++++- .++.+|+-+.|++..||+..=++|++++.+ | ++.|+-+.... ..+
T Consensus 321 ---~~~~~~~~~l~~~~~~---~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~ 394 (854)
T PLN02205 321 ---PETEAKVKELIKQFCD---QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEV 394 (854)
T ss_pred ---hhHHHHHHHHHHHhcc---CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHH
Confidence 0011123445666542 245799999999999999999999999865 3 56777665432 234
Q ss_pred HHHHHHHHHh----CCC----ceEEE-eecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCC--------------
Q 007300 443 EKQLEQLEIL----YPE----KARGV-AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT-------------- 499 (609)
Q Consensus 443 ~~~l~~l~~~----~~~----~v~~~-~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~-------------- 499 (609)
+.+++++..+ ++. -|.+. -.++.++.-.+|+.||++++++..+|+.++..|+.+|..
T Consensus 395 ~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~ 474 (854)
T PLN02205 395 QAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPS 474 (854)
T ss_pred HHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccc
Confidence 5555555543 331 13332 234667777899999999999999999999999998753
Q ss_pred -----ceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH-HHhhCCchHH
Q 007300 500 -----VPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSWKGP 573 (609)
Q Consensus 500 -----PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fs~~~~ 573 (609)
+.|.|...|....+.+ .++ |+|.|.+++|++|.++|..+..++..++.+.. ....++....
T Consensus 475 ~~~~gvLiLSEfaGaa~~L~~---Ai~----------VNP~d~~~~a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W 541 (854)
T PLN02205 475 TPKKSMLVVSEFIGCSPSLSG---AIR----------VNPWNIDAVADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYW 541 (854)
T ss_pred cCCCCceEeeeccchhHHhCc---CeE----------ECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHH
Confidence 3677777666665532 344 49999999999999999986555555544322 3466777777
Q ss_pred HHHHHHHHHHHHH
Q 007300 574 AKKWEETLLNLEV 586 (609)
Q Consensus 574 a~~~~~~~~~l~~ 586 (609)
++.++.-++++..
T Consensus 542 ~~~fl~~l~~~~~ 554 (854)
T PLN02205 542 ARSFLQDLERTCR 554 (854)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766643
No 104
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.35 E-value=2.3e-12 Score=118.79 Aligned_cols=160 Identities=24% Similarity=0.244 Sum_probs=86.4
Q ss_pred chHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEEEEeCcchhhhhcCCC
Q 007300 101 GGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKT 180 (609)
Q Consensus 101 GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~~~~~~ 180 (609)
||++.++.+|+++|+++||+|+|+++..+...+. ....|+.++.+..+....
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~------ 52 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPEDDE----------------------EEEDGVRVHRLPLPRRPW------ 52 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GGG-S----------------------EEETTEEEEEE--S-SSS------
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCcccc----------------------cccCCceEEeccCCccch------
Confidence 8999999999999999999999999875433220 123466666654322110
Q ss_pred CCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHHHHhhcCCCcccCceEE
Q 007300 181 QSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVV 260 (609)
Q Consensus 181 ~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v 260 (609)
.+. .. + +...+..++... ..+||+| |+|.+...++..+++.. .++|+|
T Consensus 53 --~~~----------~~-~---~~~~~~~~l~~~--------~~~~Dvv-~~~~~~~~~~~~~~~~~-------~~~p~v 100 (160)
T PF13579_consen 53 --PLR----------LL-R---FLRRLRRLLAAR--------RERPDVV-HAHSPTAGLVAALARRR-------RGIPLV 100 (160)
T ss_dssp --GGG----------HC-C---HHHHHHHHCHHC--------T---SEE-EEEHHHHHHHHHHHHHH-------HT--EE
T ss_pred --hhh----------hH-H---HHHHHHHHHhhh--------ccCCeEE-EecccchhHHHHHHHHc-------cCCcEE
Confidence 000 00 0 112222233111 1259999 99987766666666533 589999
Q ss_pred EEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccch
Q 007300 261 FCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELD 340 (609)
Q Consensus 261 ~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~ 340 (609)
+++|+...... ..+. ......+++..++.+|.++++|+..++.+.+ +|++.+
T Consensus 101 ~~~h~~~~~~~------------~~~~-------------~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~---~g~~~~ 152 (160)
T PF13579_consen 101 VTVHGTLFRRG------------SRWK-------------RRLYRWLERRLLRRADRVIVVSEAMRRYLRR---YGVPPD 152 (160)
T ss_dssp EE-SS-T------------------HH-------------HHHHHHHHHHHHHH-SEEEESSHHHHHHHHH---H---GG
T ss_pred EEECCCchhhc------------cchh-------------hHHHHHHHHHHHhcCCEEEECCHHHHHHHHH---hCCCCC
Confidence 99996432110 0000 0012244677899999999999999999997 677766
Q ss_pred hhhccCCeeEecCC
Q 007300 341 NIIRKTGIKGIVNG 354 (609)
Q Consensus 341 ~~~~~~~i~vI~nG 354 (609)
++.+||||
T Consensus 153 ------ri~vipnG 160 (160)
T PF13579_consen 153 ------RIHVIPNG 160 (160)
T ss_dssp ------GEEE----
T ss_pred ------cEEEeCcC
Confidence 99999998
No 105
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=4e-10 Score=120.29 Aligned_cols=295 Identities=18% Similarity=0.222 Sum_probs=196.6
Q ss_pred ceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhH
Q 007300 227 DVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKIN 306 (609)
Q Consensus 227 DvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (609)
|+| -.||+|..++|.+++... +..++.|.+|-+.+.. ..+..+. ...
T Consensus 149 DiI-WVhDYhL~L~P~mlR~~~------~~~~IgfFlHiPfPss--------------Evfr~lP------------~r~ 195 (486)
T COG0380 149 DII-WVHDYHLLLVPQMLRERI------PDAKIGFFLHIPFPSS--------------EVFRCLP------------WRE 195 (486)
T ss_pred CEE-EEEechhhhhHHHHHHhC------CCceEEEEEeCCCCCH--------------HHHhhCc------------hHH
Confidence 998 999999999999999875 7889999999654311 1111111 112
Q ss_pred HHHHHhhcCCEEEeeCHHHHHHHhcccCC--C------ccchhh-hccCCeeEecCCCCCCCcCCCCccccccccCcchh
Q 007300 307 WMKAGILESDMVLTVSPHYAQELVSGEDK--G------VELDNI-IRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTV 377 (609)
Q Consensus 307 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~--g------~~~~~~-~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~ 377 (609)
-+-.++..||.|-+.++.+++.+.+.... + +..+.. -+..++..+|-|+|+..|.-.... +
T Consensus 196 eIl~gll~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~-------~--- 265 (486)
T COG0380 196 EILEGLLGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKS-------P--- 265 (486)
T ss_pred HHHHHhhcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcC-------C---
Confidence 23457789999999999999987763211 1 111100 011367778999998877543210 0
Q ss_pred cccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCC----h---hhHH
Q 007300 378 MDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----K---PMEK 444 (609)
Q Consensus 378 ~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~----~---~~~~ 444 (609)
.....-.++++.++ .++.+|+.+.|++.-||+..=+.|+.+|.. .++.++-++... + .+..
T Consensus 266 --~v~~~~~el~~~~~----~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~ 339 (486)
T COG0380 266 --SVQEKVLELKAELG----RNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRL 339 (486)
T ss_pred --chhhHHHHHHHHhc----CCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHH
Confidence 00012344555554 236799999999999999999999999975 267777777654 2 2455
Q ss_pred HHHHHHHh----CCC----ceEEEe-ecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcC----CceEEcCCCCccc
Q 007300 445 QLEQLEIL----YPE----KARGVA-KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG----TVPIVASTGGLVD 511 (609)
Q Consensus 445 ~l~~l~~~----~~~----~v~~~~-~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G----~PvI~s~~gg~~e 511 (609)
+++++..+ ++. -+.++. ..+.+++..++..||+++++|..||+.++..|+.+|- -|.|-|...|...
T Consensus 340 ~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~ 419 (486)
T COG0380 340 QIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAAS 419 (486)
T ss_pred HHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchh
Confidence 55555543 331 122222 2467778889999999999999999999999999883 4678888877777
Q ss_pred ccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHH-HHhhCCchHHHHHHHHHHHH
Q 007300 512 TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNG-MAQDLSWKGPAKKWEETLLN 583 (609)
Q Consensus 512 ~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~-~~~~fs~~~~a~~~~~~~~~ 583 (609)
.+.+ .+++ +|.|.++++++|.++|.....++..++.... ....++....+..+++-+..
T Consensus 420 ~L~~---AliV----------NP~d~~~va~ai~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 420 ELRD---ALIV----------NPWDTKEVADAIKRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred hhcc---CEeE----------CCCChHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 7765 4544 9999999999999999985333333333221 13445655555555554443
No 106
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.24 E-value=1.3e-08 Score=107.39 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=98.6
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCH-HHHHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHhCCCceEEEeec
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGS-DILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKF 463 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~-~~ll~a~~~l~~~~~~lvi-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~ 463 (609)
+..++.++++. +.++|+.+|.-...+.+ +.+.+++..+. .++++++ +|... +++.+... . ++.. ..|
T Consensus 173 ~~~~~~~~l~~--~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~--~~~~~~~~----~-~~~~-~~f 241 (352)
T PRK12446 173 EKGLAFLGFSR--KKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGN--LDDSLQNK----E-GYRQ-FEY 241 (352)
T ss_pred hHHHHhcCCCC--CCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCch--HHHHHhhc----C-CcEE-ecc
Confidence 34456677654 44777777664445555 34445555553 3477665 45432 44443331 1 1222 245
Q ss_pred ChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCC-----C----cccccccCcceeEecccccccccCCC
Q 007300 464 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG-----G----LVDTVEEGFTGFQMGSFSVDCEAVDP 534 (609)
Q Consensus 464 ~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~g-----g----~~e~i~~~~~G~l~~~~~~~~~~v~~ 534 (609)
..+.++.+|+.||++|.- +-+.++.|++++|+|.|.-... + ..+.+.+...+..+ .-+.
T Consensus 242 ~~~~m~~~~~~adlvIsr----~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l--------~~~~ 309 (352)
T PRK12446 242 VHGELPDILAITDFVISR----AGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVL--------YEED 309 (352)
T ss_pred hhhhHHHHHHhCCEEEEC----CChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEc--------chhc
Confidence 445677899999988843 4577899999999999988542 1 22244444455543 0123
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007300 535 VDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 535 ~d~~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
-+++.+.++|.+++.+ ++.+.+ ..+.+....-+++..+++.
T Consensus 310 ~~~~~l~~~l~~ll~~--~~~~~~-----~~~~~~~~~aa~~i~~~i~ 350 (352)
T PRK12446 310 VTVNSLIKHVEELSHN--NEKYKT-----ALKKYNGKEAIQTIIDHIS 350 (352)
T ss_pred CCHHHHHHHHHHHHcC--HHHHHH-----HHHHcCCCCHHHHHHHHHH
Confidence 3678999999999876 444432 2344666666666666554
No 107
>PRK14986 glycogen phosphorylase; Provisional
Probab=99.22 E-value=2e-09 Score=120.83 Aligned_cols=288 Identities=18% Similarity=0.220 Sum_probs=187.9
Q ss_pred EEEecccccchHHH-HHHHhhcCCCc-------ccCceEEEEEecCccCC--ccccccccccCCcc----------cccc
Q 007300 229 VFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPA----------QFKS 288 (609)
Q Consensus 229 V~h~h~~~~~~~~~-~l~~~~~~~~~-------~~~~~~v~~iH~~~~~~--~~~~~~~~~l~~~~----------~~~~ 288 (609)
++|.||-|.+++.. +++......++ .....++||.|.+.+.+ .|+.+.+..+. |+ +|..
T Consensus 316 ~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~l-pr~l~Ii~eIn~~fl~ 394 (815)
T PRK14986 316 AIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKIL-PRHLQIIFEINDYFLK 394 (815)
T ss_pred EEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHc-cHhhhHHHHHHHHHHH
Confidence 44999998887644 44433221111 24567899999987655 35544433221 11 1111
Q ss_pred ccc--ccc-----CCC---CCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhccc---CCCccchhhhccCCeeEecCCC
Q 007300 289 SFD--FID-----GYN---KPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKGIVNGM 355 (609)
Q Consensus 289 ~~~--~~~-----~~~---~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~---~~g~~~~~~~~~~~i~vI~nGv 355 (609)
.+. +.. +.. ..-.+..+++-..++..|..|..||.-..+.+.+.- .+.+- +.++.-|.|||
T Consensus 395 ~~~~~~~~~~~~~~~~sii~~~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f~df~~l~------P~kf~niTNGV 468 (815)
T PRK14986 395 TLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLFADFAKIF------PGRFCNVTNGV 468 (815)
T ss_pred HHHHhCCCcHHHHhhhhccccCCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHHHHHHhhC------CCcccccCCCC
Confidence 000 000 000 000012456667778889999999988777653311 11111 23677799999
Q ss_pred CCCCcC----CCCc----cccccc--------------cCc----chhcccchHHHHH----HHHHhCCCCCCCCcEEEE
Q 007300 356 DVQEWN----PLTD----KYIGVK--------------YDA----STVMDAKPLLKEA----LQAEVGLPVDRNIPVIGF 405 (609)
Q Consensus 356 d~~~~~----p~~~----~~~~~~--------------~~~----~~~~~~~~~~~~~----~~~~~gl~~~~~~~~i~~ 405 (609)
....|- |.-. .+|... .+. ..+.+.+...|.. ++++.|...+++...+++
T Consensus 469 ~~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~~i~~~~g~~ldp~sLfd~q 548 (815)
T PRK14986 469 TPRRWLALANPSLSAVLDEHIGRTWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAEYIAQQLNVVVNPKALFDVQ 548 (815)
T ss_pred ChhhHhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcccceeee
Confidence 988885 2211 111100 111 1133444555544 356779989999999999
Q ss_pred EeccccccCHHH-HHHHHhhc---cc-C-----CeEEEEEeCCC------hhhHHHHHHHHH------hCCC--ceEEEe
Q 007300 406 IGRLEEQKGSDI-LAAAIPHF---IK-E-----NVQIIVLGTGK------KPMEKQLEQLEI------LYPE--KARGVA 461 (609)
Q Consensus 406 iGrl~~~Kg~~~-ll~a~~~l---~~-~-----~~~lvivG~g~------~~~~~~l~~l~~------~~~~--~v~~~~ 461 (609)
+-|+.++|...+ ++..+.++ ++ + +.++++.|.-. +...+.+.+++. ...+ +|++..
T Consensus 549 akR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkVVFle 628 (815)
T PRK14986 549 IKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKVVFIP 628 (815)
T ss_pred ehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeEEEeC
Confidence 999999999998 66665544 33 2 58899999854 345556666665 2333 788999
Q ss_pred ecChHHHHHHHHhCcEEEecCCC--CCCcHHHHHHHHcCCceEEcCCCCccccccc--CcceeEec
Q 007300 462 KFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMG 523 (609)
Q Consensus 462 ~~~~~~~~~~l~~aDv~v~pS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~l~~ 523 (609)
.|+...+..++.+||+....|+. |++|.+-+-+|..|.+.+++--|...|+.++ +.|||.||
T Consensus 629 nY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG 694 (815)
T PRK14986 629 NYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFG 694 (815)
T ss_pred CCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeC
Confidence 99999999999999999998875 9999999999999999999999999999986 78999996
No 108
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.16 E-value=7.5e-09 Score=116.50 Aligned_cols=294 Identities=20% Similarity=0.242 Sum_probs=192.7
Q ss_pred CCceEEEecccccchH-HHHHHHhhcCCCc-------ccCceEEEEEecCccCC--ccccccccccCCccccc--cc--c
Q 007300 225 PYDVVFVANDWHTSLI-PCYLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPAQFK--SS--F 290 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~-~~~l~~~~~~~~~-------~~~~~~v~~iH~~~~~~--~~~~~~~~~l~~~~~~~--~~--~ 290 (609)
++.+| |.||-|.+++ |-+++......++ .....++||.|.+.+.+ .|+.+.+..+ +|+.+. .. .
T Consensus 300 ~~~~i-hlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~-lpr~~~II~~In~ 377 (797)
T cd04300 300 DKVAI-QLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERL-LPRHLEIIYEINR 377 (797)
T ss_pred CceEE-EecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHH-ChHHHHHHHHHHH
Confidence 57777 9999888776 4444433321111 24567899999986655 3444433322 111110 00 0
Q ss_pred cccc--------------C--CCCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCC
Q 007300 291 DFID--------------G--YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG 354 (609)
Q Consensus 291 ~~~~--------------~--~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nG 354 (609)
.|.. . ..+.-....+++-..++..|..|-.||.-..+.+++....... . +-+.++.-+.||
T Consensus 378 ~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~~~~df~--~-l~P~kf~n~TNG 454 (797)
T cd04300 378 RFLEEVRAKYPGDEDRIRRMSIIEEGGEKQVRMAHLAIVGSHSVNGVAALHSELLKETVFKDFY--E-LYPEKFNNKTNG 454 (797)
T ss_pred HHHHHHHHhcCCCHHHHHhhcccccCCCCEEehHHHHHhcCcchhhhHHHHHHHHHHhhHHHHH--h-hCCCccCCcCCC
Confidence 0000 0 0000011346777778889999999999888777753110000 0 112377889999
Q ss_pred CCCCCcCCCCc--------cccccc-------------cC-c----chhcccchHHHHHH----HHHhCCCCCCCCcEEE
Q 007300 355 MDVQEWNPLTD--------KYIGVK-------------YD-A----STVMDAKPLLKEAL----QAEVGLPVDRNIPVIG 404 (609)
Q Consensus 355 vd~~~~~p~~~--------~~~~~~-------------~~-~----~~~~~~~~~~~~~~----~~~~gl~~~~~~~~i~ 404 (609)
|....|--... ..|... |- . ..+...|...|..+ ++..|...+++...++
T Consensus 455 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L~~~i~~~~g~~ldp~slfdv 534 (797)
T cd04300 455 ITPRRWLLQANPGLSALITETIGDDWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDV 534 (797)
T ss_pred CCcchhhhhcCHHHHHHHHHhcCchhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccEEE
Confidence 99988751111 111100 11 1 23445555555544 5678998999999999
Q ss_pred EEeccccccCHHH-HHHHHhhc---cc-C-----CeEEEEEeCCC------hhhHHHHHHHHHh------CCC--ceEEE
Q 007300 405 FIGRLEEQKGSDI-LAAAIPHF---IK-E-----NVQIIVLGTGK------KPMEKQLEQLEIL------YPE--KARGV 460 (609)
Q Consensus 405 ~iGrl~~~Kg~~~-ll~a~~~l---~~-~-----~~~lvivG~g~------~~~~~~l~~l~~~------~~~--~v~~~ 460 (609)
++-|+.++|...+ ++..+.++ ++ + +.++++.|.-. +...+.+..++.. ..+ +|++.
T Consensus 535 q~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFl 614 (797)
T cd04300 535 QVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKVVFL 614 (797)
T ss_pred EeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEEEEe
Confidence 9999999999998 66665544 33 2 47888998754 3445556565553 223 68899
Q ss_pred eecChHHHHHHHHhCcEEEecCCC--CCCcHHHHHHHHcCCceEEcCCCCccccccc--CcceeEec
Q 007300 461 AKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMG 523 (609)
Q Consensus 461 ~~~~~~~~~~~l~~aDv~v~pS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~l~~ 523 (609)
..|+...+..++.+||+-...|+. |++|..-+-+|..|.+.++|--|...|+.++ ++|+|+||
T Consensus 615 enY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG 681 (797)
T cd04300 615 PNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFG 681 (797)
T ss_pred CCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeC
Confidence 999999999999999999998875 9999999999999999999999999999987 78999996
No 109
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.14 E-value=1.2e-07 Score=99.59 Aligned_cols=342 Identities=17% Similarity=0.134 Sum_probs=185.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCe-EEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR-VMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVD 163 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~-V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 163 (609)
|+|++.... +||==.....++++|.++|++ |.++...+. . ..+.....++.
T Consensus 1 ~~ivl~~gG------TGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~--~--------------------e~~l~~~~~~~ 52 (357)
T COG0707 1 KKIVLTAGG------TGGHVFPALALAEELAKRGWEQVIVLGTGDG--L--------------------EAFLVKQYGIE 52 (357)
T ss_pred CeEEEEeCC------CccchhHHHHHHHHHHhhCccEEEEeccccc--c--------------------eeeeccccCce
Confidence 455555532 566666677799999999995 555533311 0 11111222667
Q ss_pred EEEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHH
Q 007300 164 RVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCY 243 (609)
Q Consensus 164 ~~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~ 243 (609)
++.++...+..+ .. +. +......+++...++.+.+... +||+|+-++.+.+.+ +.+
T Consensus 53 ~~~I~~~~~~~~-------~~--------~~-~~~~~~~~~~~~~~a~~il~~~-------kPd~vig~Ggyvs~P-~~~ 108 (357)
T COG0707 53 FELIPSGGLRRK-------GS--------LK-LLKAPFKLLKGVLQARKILKKL-------KPDVVIGTGGYVSGP-VGI 108 (357)
T ss_pred EEEEeccccccc-------Cc--------HH-HHHHHHHHHHHHHHHHHHHHHc-------CCCEEEecCCccccH-HHH
Confidence 777765433221 00 11 2322233444444444443322 699995445444443 333
Q ss_pred HHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCH
Q 007300 244 LKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSP 323 (609)
Q Consensus 244 l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~ 323 (609)
.... .++|++....|..+ | ...+...+.++.|.+.-+
T Consensus 109 Aa~~-------~~iPv~ihEqn~~~-G-----------------------------------~ank~~~~~a~~V~~~f~ 145 (357)
T COG0707 109 AAKL-------LGIPVIIHEQNAVP-G-----------------------------------LANKILSKFAKKVASAFP 145 (357)
T ss_pred HHHh-------CCCCEEEEecCCCc-c-----------------------------------hhHHHhHHhhceeeeccc
Confidence 3332 58999877666443 1 111233556777766544
Q ss_pred HHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEE
Q 007300 324 HYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVI 403 (609)
Q Consensus 324 ~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i 403 (609)
.. . -+.+ +.++.+.-|.+..+... .. ....+..... ++++|
T Consensus 146 ~~-~-------~~~~------~~~~~~tG~Pvr~~~~~-~~--------------------~~~~~~~~~~----~~~~i 186 (357)
T COG0707 146 KL-E-------AGVK------PENVVVTGIPVRPEFEE-LP--------------------AAEVRKDGRL----DKKTI 186 (357)
T ss_pred cc-c-------ccCC------CCceEEecCcccHHhhc-cc--------------------hhhhhhhccC----CCcEE
Confidence 41 1 1111 11566677777665543 11 1112222221 45677
Q ss_pred EEEeccccccCHHHH-HHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecC
Q 007300 404 GFIGRLEEQKGSDIL-AAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPS 482 (609)
Q Consensus 404 ~~iGrl~~~Kg~~~l-l~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS 482 (609)
+.+|.-..-+.+..+ .++...+. ++++++....... +++....+. +++. .....|..+ +..+|+.||+++.=
T Consensus 187 lV~GGS~Ga~~ln~~v~~~~~~l~-~~~~v~~~~G~~~-~~~~~~~~~-~~~~--~~v~~f~~d-m~~~~~~ADLvIsR- 259 (357)
T COG0707 187 LVTGGSQGAKALNDLVPEALAKLA-NRIQVIHQTGKND-LEELKSAYN-ELGV--VRVLPFIDD-MAALLAAADLVISR- 259 (357)
T ss_pred EEECCcchhHHHHHHHHHHHHHhh-hCeEEEEEcCcch-HHHHHHHHh-hcCc--EEEeeHHhh-HHHHHHhccEEEeC-
Confidence 666664433333333 34444443 3677765543321 333333333 2332 333445444 55799999999943
Q ss_pred CCCCCcHHHHHHHHcCCceEEcCCCCc--------ccccccCcceeEecccccccccCCCCC--HHHHHHHHHHHHHhhC
Q 007300 483 RFEPCGLIQLHAMRYGTVPIVASTGGL--------VDTVEEGFTGFQMGSFSVDCEAVDPVD--VAAVSTTVRRALATYG 552 (609)
Q Consensus 483 ~~E~~gl~~lEAma~G~PvI~s~~gg~--------~e~i~~~~~G~l~~~~~~~~~~v~~~d--~~~la~~I~~ll~~~~ 552 (609)
+=++++.|..++|+|.|--..+.. ...+.+...+..+ +..+ ++++.+.|.+++.+
T Consensus 260 ---aGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i----------~~~~lt~~~l~~~i~~l~~~-- 324 (357)
T COG0707 260 ---AGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVI----------RQSELTPEKLAELILRLLSN-- 324 (357)
T ss_pred ---CcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEe----------ccccCCHHHHHHHHHHHhcC--
Confidence 356899999999999987764332 3344455566655 4444 89999999999997
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 007300 553 TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 553 ~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l 584 (609)
++.+.+|..++ +.+.-...++++.+.....
T Consensus 325 ~~~l~~m~~~a--~~~~~p~aa~~i~~~~~~~ 354 (357)
T COG0707 325 PEKLKAMAENA--KKLGKPDAAERIADLLLAL 354 (357)
T ss_pred HHHHHHHHHHH--HhcCCCCHHHHHHHHHHHH
Confidence 77788887764 4455555566666655544
No 110
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=99.13 E-value=2.2e-09 Score=120.11 Aligned_cols=291 Identities=17% Similarity=0.228 Sum_probs=187.7
Q ss_pred CCceEEEecccccchH-HHHHHHhhcCCCc-------ccCceEEEEEecCccCCc--cccccccccCCccccc----ccc
Q 007300 225 PYDVVFVANDWHTSLI-PCYLKTMYKPKGM-------YKSAKVVFCIHNIAYQGR--FAFEDFGLLNLPAQFK----SSF 290 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~-~~~l~~~~~~~~~-------~~~~~~v~~iH~~~~~~~--~~~~~~~~l~~~~~~~----~~~ 290 (609)
++.+| |.||-|.+++ |-+++......++ .....++||.|.+-+.+. |+.+.+..+ +|+.+. ..-
T Consensus 302 ~~~~i-hlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~-Lpr~~~ii~~in~ 379 (798)
T PRK14985 302 DYEVI-QLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSL-LPRHMQIIKEINT 379 (798)
T ss_pred CCcEE-EecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHH-hHHHHHHHHHHHH
Confidence 56777 9999888776 4444433321111 245578999999866553 444433321 111110 000
Q ss_pred ccc----cCCCC---------CcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhcccC---CCccchhhhccCCeeEecCC
Q 007300 291 DFI----DGYNK---------PVRGRKINWMKAGILESDMVLTVSPHYAQELVSGED---KGVELDNIIRKTGIKGIVNG 354 (609)
Q Consensus 291 ~~~----~~~~~---------~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~---~g~~~~~~~~~~~i~vI~nG 354 (609)
.|+ ..+.. .+....+++-..++..|..|-.||.-..+.+.+.-. +.+- +.++.-|.||
T Consensus 380 ~fl~~~~~~~~~d~~~~~~~sii~~~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~df~~l~------p~kf~nvTNG 453 (798)
T PRK14985 380 RFKTLVEKTWPGDKKVWAKLAVVHDKQVRMANLCVVSGFAVNGVAALHSDLVVKDLFPEYHQLW------PNKFHNVTNG 453 (798)
T ss_pred HHHHHHHHhCCCcHHHhhhhhhccCCeeehHHHHHHhcchhHhhHHHHhchhHHhhhhhhHhhC------CCccCCcCCC
Confidence 010 00000 011123566666777888888888876665443111 1111 2377889999
Q ss_pred CCCCCcC----CCC----ccccc-------------cccCc-ch----hcccchHHHHH----HHHHhCCCCCCCCcEEE
Q 007300 355 MDVQEWN----PLT----DKYIG-------------VKYDA-ST----VMDAKPLLKEA----LQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 355 vd~~~~~----p~~----~~~~~-------------~~~~~-~~----~~~~~~~~~~~----~~~~~gl~~~~~~~~i~ 404 (609)
|....|- |.- +.+|. .+|.+ .. +.+.+...|.. ++++.|...+++...++
T Consensus 454 Vt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~i~~~~g~~ldp~slfdv 533 (798)
T PRK14985 454 ITPRRWIKQCNPALAALLDKTLKKEWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEFVKQRTGIEINPQAIFDV 533 (798)
T ss_pred cCcchhhhhhCHHHHHHHHHhcCcchhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCchhcchh
Confidence 9998884 321 11111 11222 22 23444444444 45777888889989999
Q ss_pred EEeccccccCHHH-HHHHHhhccc----C-----CeEEEEEeCCC------hhhHHHHHHHHHhC------CC--ceEEE
Q 007300 405 FIGRLEEQKGSDI-LAAAIPHFIK----E-----NVQIIVLGTGK------KPMEKQLEQLEILY------PE--KARGV 460 (609)
Q Consensus 405 ~iGrl~~~Kg~~~-ll~a~~~l~~----~-----~~~lvivG~g~------~~~~~~l~~l~~~~------~~--~v~~~ 460 (609)
++-|+.++|...+ ++..+..+.+ + +.++++.|.-. +...+.+..++... .+ +|++.
T Consensus 534 q~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkVVFl 613 (798)
T PRK14985 534 QIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVGDKLKVVFL 613 (798)
T ss_pred hHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhCCceeEEEe
Confidence 9999999999988 7666555432 2 47899999854 23445555555432 22 68899
Q ss_pred eecChHHHHHHHHhCcEEEecCCC--CCCcHHHHHHHHcCCceEEcCCCCccccccc--CcceeEec
Q 007300 461 AKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMG 523 (609)
Q Consensus 461 ~~~~~~~~~~~l~~aDv~v~pS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~l~~ 523 (609)
..|+...+..++.+||+....|+. |++|..-+-+|..|.+.++|--|...|+.++ +.|||+||
T Consensus 614 enY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG 680 (798)
T PRK14985 614 PDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFG 680 (798)
T ss_pred CCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeC
Confidence 999999999999999999998875 9999999999999999999999999999886 78999996
No 111
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.11 E-value=3.1e-10 Score=95.51 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=78.2
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHH
Q 007300 477 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL 556 (609)
Q Consensus 477 v~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~ 556 (609)
+++.|++.++++..++|+|+||+|+|+++.+++.+++.++.+++.+ + |++++.++|..++++ ++.+
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~----------~--~~~el~~~i~~ll~~--~~~~ 66 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITY----------N--DPEELAEKIEYLLEN--PEER 66 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEE----------C--CHHHHHHHHHHHHCC--HHHH
Confidence 4677898999999999999999999999999999999999899976 3 999999999999998 6666
Q ss_pred HHHHHHH---HHhhCCchHHHHHHHH
Q 007300 557 AEMMKNG---MAQDLSWKGPAKKWEE 579 (609)
Q Consensus 557 ~~~~~~~---~~~~fs~~~~a~~~~~ 579 (609)
+++++++ +.++|||+..++++++
T Consensus 67 ~~ia~~a~~~v~~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 67 RRIAKNARERVLKRHTWEHRAEQILE 92 (92)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 6666555 6789999999999864
No 112
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=99.10 E-value=1.9e-09 Score=120.64 Aligned_cols=292 Identities=21% Similarity=0.239 Sum_probs=191.9
Q ss_pred CCceEEEecccccchHHH-HHHHhhcCCCc-------ccCceEEEEEecCccCC--cccccccccc---------CCccc
Q 007300 225 PYDVVFVANDWHTSLIPC-YLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLL---------NLPAQ 285 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~-~l~~~~~~~~~-------~~~~~~v~~iH~~~~~~--~~~~~~~~~l---------~~~~~ 285 (609)
++.+| |.||-|.+++.. +++......++ .....++||.|.+.+.+ .|+.+.+..+ ++..+
T Consensus 297 ~~~~i-hlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~In~~ 375 (794)
T TIGR02093 297 KKVAI-QLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEINRR 375 (794)
T ss_pred cceEE-EecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHHhHH
Confidence 46777 999988877644 44433222111 24567899999986655 3444443321 11111
Q ss_pred cccccc--ccc------C--CCCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhccc---CCCccchhhhccCCeeEec
Q 007300 286 FKSSFD--FID------G--YNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGE---DKGVELDNIIRKTGIKGIV 352 (609)
Q Consensus 286 ~~~~~~--~~~------~--~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~---~~g~~~~~~~~~~~i~vI~ 352 (609)
|..... +.. . ..+.-....+++-..++..|..|-.||.-..+.+++.. .+.+= +.++.-+.
T Consensus 376 fl~~~~~~~p~d~~~~~~~sii~~~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~~~~df~~l~------P~kf~n~T 449 (794)
T TIGR02093 376 FLAELAAKGPGDEAKIRRMSIIEEGQSKRVRMANLAIVGSHSVNGVAALHTELLKEDLLKDFYELY------PEKFNNKT 449 (794)
T ss_pred HHHHHHHhCCCcHHHHhheeeeecCCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhC------CCccCCcC
Confidence 111000 000 0 00000012467777788899999999998887766411 11111 23778899
Q ss_pred CCCCCCCcCCCCc--------ccccc-------------cc-Cc----chhcccchHHHHHH----HHHhCCCCCCCCcE
Q 007300 353 NGMDVQEWNPLTD--------KYIGV-------------KY-DA----STVMDAKPLLKEAL----QAEVGLPVDRNIPV 402 (609)
Q Consensus 353 nGvd~~~~~p~~~--------~~~~~-------------~~-~~----~~~~~~~~~~~~~~----~~~~gl~~~~~~~~ 402 (609)
|||....|--... ++|.. +| +. ..+...|...|..+ +++.|...+++...
T Consensus 450 NGVt~rrWl~~~np~L~~Li~~~ig~~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L~~~i~~~~g~~ldp~slf 529 (794)
T TIGR02093 450 NGITPRRWLRLANPGLSALLTETIGDDWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRLAAYIKEHTGVEVDPNSIF 529 (794)
T ss_pred CCCCccchhhhcCHHHHHHHHHhcCchhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccccc
Confidence 9999988852111 11110 12 22 33445555555544 56788888899899
Q ss_pred EEEEeccccccCHHH-HHHHHhhc---cc-C-----CeEEEEEeCCC------hhhHHHHHHHHHh------CCC--ceE
Q 007300 403 IGFIGRLEEQKGSDI-LAAAIPHF---IK-E-----NVQIIVLGTGK------KPMEKQLEQLEIL------YPE--KAR 458 (609)
Q Consensus 403 i~~iGrl~~~Kg~~~-ll~a~~~l---~~-~-----~~~lvivG~g~------~~~~~~l~~l~~~------~~~--~v~ 458 (609)
++++-|+.++|...+ ++..+..+ ++ + +.++++.|.-. +...+.+..++.. ..+ +|+
T Consensus 530 dvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkVV 609 (794)
T TIGR02093 530 DVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKVV 609 (794)
T ss_pred hhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeEE
Confidence 999999999999988 66665544 33 2 56899999854 3445555555532 223 788
Q ss_pred EEeecChHHHHHHHHhCcEEEecCCC--CCCcHHHHHHHHcCCceEEcCCCCccccccc--CcceeEec
Q 007300 459 GVAKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMG 523 (609)
Q Consensus 459 ~~~~~~~~~~~~~l~~aDv~v~pS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~l~~ 523 (609)
+...|+...+..++.+||+-...|+. |++|..-+-+|..|.+.++|--|...|+.++ ++|+|+||
T Consensus 610 FlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG 678 (794)
T TIGR02093 610 FVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFG 678 (794)
T ss_pred EeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcC
Confidence 99999999999999999999998875 9999999999999999999999999999987 78999996
No 113
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.09 E-value=3.5e-09 Score=113.96 Aligned_cols=171 Identities=8% Similarity=0.013 Sum_probs=130.5
Q ss_pred hcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHh
Q 007300 313 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEV 392 (609)
Q Consensus 313 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (609)
.+.|.||+.++...+.+.+.... ..++.+||-|+=.. + +.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~---------~~~~~~ip~g~i~~-~-~~----------------------------- 277 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDN---------EYQEQISQLGYLYP-F-KK----------------------------- 277 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCc---------ccCceEEEEEEEEe-e-cc-----------------------------
Confidence 57889999998877777653211 12566677665311 1 11
Q ss_pred CCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHH
Q 007300 393 GLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHM 470 (609)
Q Consensus 393 gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ 470 (609)
.++..+-+++++. +..++++..|.+ |+++|.| |.+.+ +...|.++ .++ .+++.+..+....+..
T Consensus 278 ---~~r~~~~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te-~s~kL~~L-~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 278 ---DNKYRKQALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTE-MSSKLMSL-DKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred ---ccCCcccEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCc-ccHHHHHH-Hhc-CCcEEECCcChHHHHH
Confidence 0112245666662 888899998866 8999999 77663 45788888 666 4577778888777888
Q ss_pred HHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC-CCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
++..||+++..|..|++++++.||+..|+|+++-+. -|..+++.+ |.++ +.+|+++|+++|.+++.
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~----------~~~~~~~m~~~i~~lL~ 410 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIF----------EHNEVDQLISKLKDLLN 410 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---Ccee----------cCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999985 456677776 6766 99999999999999998
Q ss_pred h
Q 007300 550 T 550 (609)
Q Consensus 550 ~ 550 (609)
+
T Consensus 411 d 411 (438)
T TIGR02919 411 D 411 (438)
T ss_pred C
Confidence 8
No 114
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.86 E-value=4.2e-08 Score=92.54 Aligned_cols=182 Identities=19% Similarity=0.223 Sum_probs=111.1
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeEE
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDRV 165 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 165 (609)
||++|++--.| ...||.++++.+|+..|+++||+|+|.|........ .....|++.+
T Consensus 3 kIaIiGtrGIP-a~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~----------------------~~~y~gv~l~ 59 (185)
T PF09314_consen 3 KIAIIGTRGIP-ARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYK----------------------EFEYNGVRLV 59 (185)
T ss_pred eEEEEeCCCCC-cccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCC----------------------CcccCCeEEE
Confidence 79999988677 578999999999999999999999999976321111 1234577777
Q ss_pred EEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccc-cchHHHHH
Q 007300 166 FVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWH-TSLIPCYL 244 (609)
Q Consensus 166 ~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~-~~~~~~~l 244 (609)
.+..+..- ....+.+...++..++.....+ .-+.||| +.+... .+++..++
T Consensus 60 ~i~~~~~g----------------------~~~si~yd~~sl~~al~~~~~~-----~~~~~ii-~ilg~~~g~~~~~~~ 111 (185)
T PF09314_consen 60 YIPAPKNG----------------------SAESIIYDFLSLLHALRFIKQD-----KIKYDII-LILGYGIGPFFLPFL 111 (185)
T ss_pred EeCCCCCC----------------------chHHHHHHHHHHHHHHHHHhhc-----cccCCEE-EEEcCCccHHHHHHH
Confidence 77543210 0112222233334443221100 0036888 776655 33444444
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
+...+ .+.|+++.+|.+++.-. +.+.+. .......++...+.||.+|+.|+.
T Consensus 112 r~~~~-----~g~~v~vN~DGlEWkR~-------KW~~~~----------------k~~lk~~E~~avk~ad~lIaDs~~ 163 (185)
T PF09314_consen 112 RKLRK-----KGGKVVVNMDGLEWKRA-------KWGRPA----------------KKYLKFSEKLAVKYADRLIADSKG 163 (185)
T ss_pred Hhhhh-----cCCcEEECCCcchhhhh-------hcCHHH----------------HHHHHHHHHHHHHhCCEEEEcCHH
Confidence 43321 37799999997765211 000000 001122346678899999999999
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEecCCCC
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGIVNGMD 356 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd 356 (609)
..+++.+. ++. .+.++|++|.|
T Consensus 164 I~~y~~~~--y~~--------~~s~~IaYGad 185 (185)
T PF09314_consen 164 IQDYIKER--YGR--------KKSTFIAYGAD 185 (185)
T ss_pred HHHHHHHH--cCC--------CCcEEecCCCC
Confidence 99999973 431 27899999986
No 115
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=98.85 E-value=1.8e-07 Score=104.01 Aligned_cols=289 Identities=19% Similarity=0.248 Sum_probs=165.4
Q ss_pred eEEEecccccchH-HHHHHHhhcCCCc-------ccCceEEEEEecCccCC--ccccccccccCCcc----------ccc
Q 007300 228 VVFVANDWHTSLI-PCYLKTMYKPKGM-------YKSAKVVFCIHNIAYQG--RFAFEDFGLLNLPA----------QFK 287 (609)
Q Consensus 228 vV~h~h~~~~~~~-~~~l~~~~~~~~~-------~~~~~~v~~iH~~~~~~--~~~~~~~~~l~~~~----------~~~ 287 (609)
+++|.||-|.+++ +-.++......++ ....-++||.|.+.+.+ +|+.+.+..+ +|+ +|.
T Consensus 216 ~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~-Lpr~~~ii~ein~~f~ 294 (713)
T PF00343_consen 216 VVIHLNDTHPAFAIPELMRILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERY-LPRHLEIIYEINRRFL 294 (713)
T ss_dssp EEEEEESSTTTTHHHHHHHHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHH-SHHHHHHHHHHHHHHH
T ss_pred eEEeecCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHH-ChHHHHHHHHHhHHHH
Confidence 4459999888876 4455544433333 23447899999987765 3554443321 111 111
Q ss_pred ccc--------cccc--CCCCCcCCchhHHHHHHhhcCCEEEeeCHHHHHHHhcccC---CCccchhhhccCCeeEecCC
Q 007300 288 SSF--------DFID--GYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGED---KGVELDNIIRKTGIKGIVNG 354 (609)
Q Consensus 288 ~~~--------~~~~--~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~---~g~~~~~~~~~~~i~vI~nG 354 (609)
..+ +... +....-....+++-..++..|..+-.||.-..+.+++... +.+.+ .++.-|.||
T Consensus 295 ~~~~~~~~~d~~~~~~l~ii~~~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P------~kf~nvTNG 368 (713)
T PF00343_consen 295 DELRRKYPGDEDQIRRLSIIEEGNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWP------EKFGNVTNG 368 (713)
T ss_dssp HHHHHHSTT-HHHHHHHSSEETSSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSG------GGEEE----
T ss_pred HHHHHHhcCcchhhhhcccccccchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCC------ceeeccccC
Confidence 100 0000 0000001235677788899999999999988887665221 12222 379999999
Q ss_pred CCCCCcCCCCc--------ccccccc--Ccch----------------hcccchHHH----HHHHHHhCCCCCCCCcEEE
Q 007300 355 MDVQEWNPLTD--------KYIGVKY--DAST----------------VMDAKPLLK----EALQAEVGLPVDRNIPVIG 404 (609)
Q Consensus 355 vd~~~~~p~~~--------~~~~~~~--~~~~----------------~~~~~~~~~----~~~~~~~gl~~~~~~~~i~ 404 (609)
|....|-.... +++...+ |++. +...|...| +.++++.|...+++...++
T Consensus 369 Vh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv 448 (713)
T PF00343_consen 369 VHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDV 448 (713)
T ss_dssp B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEE
T ss_pred ccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhh
Confidence 99988843211 1211111 1111 112222223 2345677887788888999
Q ss_pred EEeccccccCHHH-HH---HHHhhccc------CCeEEEEEeCCCh------hhHHHHHHHHH---h---CCC--ceEEE
Q 007300 405 FIGRLEEQKGSDI-LA---AAIPHFIK------ENVQIIVLGTGKK------PMEKQLEQLEI---L---YPE--KARGV 460 (609)
Q Consensus 405 ~iGrl~~~Kg~~~-ll---~a~~~l~~------~~~~lvivG~g~~------~~~~~l~~l~~---~---~~~--~v~~~ 460 (609)
++-|+.++|...+ ++ +-+.++++ .++++++.|.-.+ .+.+.+.+++. . ..+ +|++.
T Consensus 449 ~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFl 528 (713)
T PF00343_consen 449 QARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFL 528 (713)
T ss_dssp EES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEE
T ss_pred hhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEee
Confidence 9999999999888 33 33444443 2688999998542 34444545543 1 223 68899
Q ss_pred eecChHHHHHHHHhCcEEEecCCC--CCCcHHHHHHHHcCCceEEcCCCCccccccc--CcceeEec
Q 007300 461 AKFNIPLAHMIIAGADFILIPSRF--EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTGFQMG 523 (609)
Q Consensus 461 ~~~~~~~~~~~l~~aDv~v~pS~~--E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G~l~~ 523 (609)
..|+...+..++.++||.+..|+. |++|.+-+-+|..|.+-+++--|...|+.++ ..|.|+||
T Consensus 529 enYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG 595 (713)
T PF00343_consen 529 ENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFG 595 (713)
T ss_dssp TT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES
T ss_pred cCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcC
Confidence 999999999999999999999875 9999999999999999999999999998864 46899996
No 116
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.67 E-value=5e-06 Score=88.35 Aligned_cols=214 Identities=14% Similarity=0.141 Sum_probs=129.4
Q ss_pred hcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecC-CCCCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 313 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN-GMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 313 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~n-Gvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
+.|+..++.++..++.+.+ .|.+.+ ++.++-| ++|.-.+.... .+..+.++
T Consensus 143 ~la~l~f~~t~~~~~~L~~---eg~~~~------~i~~tG~~~iD~l~~~~~~-------------------~~~~~~~~ 194 (365)
T TIGR03568 143 KLSHLHFVATEEYRQRVIQ---MGEDPD------RVFNVGSPGLDNILSLDLL-------------------SKEELEEK 194 (365)
T ss_pred HHHhhccCCCHHHHHHHHH---cCCCCC------cEEEECCcHHHHHHhhhcc-------------------CHHHHHHH
Confidence 4578888999999998876 566544 6766654 55533221110 14566778
Q ss_pred hCCCCCCCCcEEEEEeccc--cc---cCHHHHHHHHhhcccCCeEEEEE-eC-CChhhHHHHHHHHHhCCCceEEEeecC
Q 007300 392 VGLPVDRNIPVIGFIGRLE--EQ---KGSDILAAAIPHFIKENVQIIVL-GT-GKKPMEKQLEQLEILYPEKARGVAKFN 464 (609)
Q Consensus 392 ~gl~~~~~~~~i~~iGrl~--~~---Kg~~~ll~a~~~l~~~~~~lviv-G~-g~~~~~~~l~~l~~~~~~~v~~~~~~~ 464 (609)
+|++.+. ..+++.+-+-+ .. +.+..+++++..+. .++.++.- ++ +.+...+.++++... ..++.......
T Consensus 195 lgl~~~~-~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~-~~~~vi~P~~~p~~~~i~~~i~~~~~~-~~~v~l~~~l~ 271 (365)
T TIGR03568 195 LGIDLDK-PYALVTFHPVTLEKESAEEQIKELLKALDELN-KNYIFTYPNADAGSRIINEAIEEYVNE-HPNFRLFKSLG 271 (365)
T ss_pred hCCCCCC-CEEEEEeCCCcccccCchHHHHHHHHHHHHhc-cCCEEEEeCCCCCchHHHHHHHHHhcC-CCCEEEECCCC
Confidence 8875332 23334444432 22 34555555555542 24433221 22 223455566666432 23577777778
Q ss_pred hHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHH
Q 007300 465 IPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 465 ~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
..+...+++.||+++--| .|.. .||.++|+|+|+ .+.-+|.+..+.+.+++ ..|++++.+++
T Consensus 272 ~~~~l~Ll~~a~~vitdS----Sggi-~EA~~lg~Pvv~--l~~R~e~~~~g~nvl~v-----------g~~~~~I~~a~ 333 (365)
T TIGR03568 272 QERYLSLLKNADAVIGNS----SSGI-IEAPSFGVPTIN--IGTRQKGRLRADSVIDV-----------DPDKEEIVKAI 333 (365)
T ss_pred hHHHHHHHHhCCEEEEcC----hhHH-HhhhhcCCCEEe--ecCCchhhhhcCeEEEe-----------CCCHHHHHHHH
Confidence 888888999999999443 2333 899999999994 45678888877777753 56899999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q 007300 545 RRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEET 580 (609)
Q Consensus 545 ~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~ 580 (609)
.++++ ...+..+.. ....|.....+++..++
T Consensus 334 ~~~~~---~~~~~~~~~--~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 334 EKLLD---PAFKKSLKN--VKNPYGDGNSSERIIEI 364 (365)
T ss_pred HHHhC---hHHHHHHhh--CCCCCCCChHHHHHHHh
Confidence 99543 222222211 23456666666766654
No 117
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.58 E-value=5e-06 Score=86.36 Aligned_cols=295 Identities=18% Similarity=0.176 Sum_probs=160.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCccccCCCceEEEEEeCCEEeeEEEEEeeEcCeeE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQYKDAWDTDVVIELKVGDKIEKVRFFHCHKRGVDR 164 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 164 (609)
|||++=-.. +| --.+...+...|.++||+|.|.+..++...+-.+ .-|++.
T Consensus 1 MkIwiDi~~-p~------hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~----------------------~yg~~y 51 (335)
T PF04007_consen 1 MKIWIDITH-PA------HVHFFKNIIRELEKRGHEVLITARDKDETEELLD----------------------LYGIDY 51 (335)
T ss_pred CeEEEECCC-ch------HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH----------------------HcCCCe
Confidence 888887654 33 3567888999999999999999988765444211 113444
Q ss_pred EEEeCcchhhhhcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHHhhhhhccCCCCCCCCCCceEEEecccccchHHHHH
Q 007300 165 VFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYDVVFVANDWHTSLIPCYL 244 (609)
Q Consensus 165 ~~v~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~pDvV~h~h~~~~~~~~~~l 244 (609)
..+.. .|..+++ +.........++.+..... +||++ .++....+ + ..
T Consensus 52 ~~iG~----------~g~~~~~------------Kl~~~~~R~~~l~~~~~~~-------~pDv~-is~~s~~a--~-~v 98 (335)
T PF04007_consen 52 IVIGK----------HGDSLYG------------KLLESIERQYKLLKLIKKF-------KPDVA-ISFGSPEA--A-RV 98 (335)
T ss_pred EEEcC----------CCCCHHH------------HHHHHHHHHHHHHHHHHhh-------CCCEE-EecCcHHH--H-HH
Confidence 44421 1111121 1111222222333332211 59998 55432222 1 11
Q ss_pred HHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchhHHHHHHhhcCCEEEeeCHH
Q 007300 245 KTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPH 324 (609)
Q Consensus 245 ~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~vi~vS~~ 324 (609)
... .++|.|....+... ....+..+..||.+++++-.
T Consensus 99 a~~-------lgiP~I~f~D~e~a------------------------------------~~~~~Lt~Pla~~i~~P~~~ 135 (335)
T PF04007_consen 99 AFG-------LGIPSIVFNDTEHA------------------------------------IAQNRLTLPLADVIITPEAI 135 (335)
T ss_pred HHH-------hCCCeEEEecCchh------------------------------------hccceeehhcCCeeECCccc
Confidence 111 48898877664110 00012245579999988776
Q ss_pred HHHHHhcccCCCccchhhhccCCeeEe-cCCCCCCC----cCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCC
Q 007300 325 YAQELVSGEDKGVELDNIIRKTGIKGI-VNGMDVQE----WNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRN 399 (609)
Q Consensus 325 ~~~~l~~~~~~g~~~~~~~~~~~i~vI-~nGvd~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~ 399 (609)
-...+.+ +|.. + .+. +||++... |.| ...+.+++|+..
T Consensus 136 ~~~~~~~---~G~~-~--------~i~~y~G~~E~ayl~~F~P----------------------d~~vl~~lg~~~--- 178 (335)
T PF04007_consen 136 PKEFLKR---FGAK-N--------QIRTYNGYKELAYLHPFKP----------------------DPEVLKELGLDD--- 178 (335)
T ss_pred CHHHHHh---cCCc-C--------CEEEECCeeeEEeecCCCC----------------------ChhHHHHcCCCC---
Confidence 5555554 4533 2 234 77776433 333 245677888652
Q ss_pred CcEEEEEecccccc-----C-HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHH
Q 007300 400 IPVIGFIGRLEEQK-----G-SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 400 ~~~i~~iGrl~~~K-----g-~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~ 473 (609)
.+.|+. |.++.+ | -..+-+.++.|.+..-.+|++-...+ . .++..+++ +... -..-+.+.++.
T Consensus 179 ~~yIvv--R~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~-~----~~~~~~~~--~~i~--~~~vd~~~Ll~ 247 (335)
T PF04007_consen 179 EPYIVV--RPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED-Q----RELFEKYG--VIIP--PEPVDGLDLLY 247 (335)
T ss_pred CCEEEE--EeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-h----hhHHhccC--cccc--CCCCCHHHHHH
Confidence 244442 444422 2 23355666666553333666654331 1 12222332 1111 11112346999
Q ss_pred hCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC---cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 474 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg---~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
.||++|- +-|....||...|+|.|.+..|- .-+.+.+ .|+++ ...|++++.+.+.+.+.
T Consensus 248 ~a~l~Ig-----~ggTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~--~Gll~----------~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 248 YADLVIG-----GGGTMAREAALLGTPAISCFPGKLLAVDKYLIE--KGLLY----------HSTDPDEIVEYVRKNLG 309 (335)
T ss_pred hcCEEEe-----CCcHHHHHHHHhCCCEEEecCCcchhHHHHHHH--CCCeE----------ecCCHHHHHHHHHHhhh
Confidence 9999993 45678999999999999986542 2233333 47766 77899999886666554
No 118
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.6e-07 Score=94.90 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=74.1
Q ss_pred HHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccccc----ccC-cceeEecccccccccC-CCCCHHHHHHH
Q 007300 470 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV----EEG-FTGFQMGSFSVDCEAV-DPVDVAAVSTT 543 (609)
Q Consensus 470 ~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i----~~~-~~G~l~~~~~~~~~~v-~~~d~~~la~~ 543 (609)
++..+|.+.|+||.+|++|.+..|.--+|+|.|.|+..|+.-.. .+. ..|+-+ +|-+-. ..+++++|++-
T Consensus 496 eFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYI----vDRRfks~deSv~qL~~~ 571 (692)
T KOG3742|consen 496 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYI----VDRRFKSPDESVQQLASF 571 (692)
T ss_pred HHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEE----EecccCChhhHHHHHHHH
Confidence 57899999999999999999999999999999999998865444 332 345433 111111 23345667666
Q ss_pred HHHHHHhhCHHHHHHHHHHH----HHhhCCchHHHHHHHHHHHHHH
Q 007300 544 VRRALATYGTQALAEMMKNG----MAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 544 I~~ll~~~~~~~~~~~~~~~----~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
+...... .+++++.++. +..-++|+.+...|.+.=.-.+
T Consensus 572 m~~F~~q---sRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~laL 614 (692)
T KOG3742|consen 572 MYEFCKQ---SRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHLAL 614 (692)
T ss_pred HHHHHHH---HHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHHHH
Confidence 6665553 3444444332 4566899999988877554444
No 119
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.57 E-value=3.1e-05 Score=83.12 Aligned_cols=210 Identities=15% Similarity=0.054 Sum_probs=121.2
Q ss_pred HhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHH
Q 007300 311 GILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQA 390 (609)
Q Consensus 311 ~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (609)
.-+.||.|++..+...+.+.+ .|+ ++.++-|.+=.. ..+.. +
T Consensus 157 ~~~~a~~v~~~~~~t~~~l~~---~g~---------k~~~vGnPv~d~-l~~~~--------------------~----- 198 (396)
T TIGR03492 157 RSRRCLAVFVRDRLTARDLRR---QGV---------RASYLGNPMMDG-LEPPE--------------------R----- 198 (396)
T ss_pred hchhhCEEeCCCHHHHHHHHH---CCC---------eEEEeCcCHHhc-Ccccc--------------------c-----
Confidence 346799999999998988875 332 556666654211 11110 0
Q ss_pred HhCCCCCCCCcE-EEEEeccc--cccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCC-----------
Q 007300 391 EVGLPVDRNIPV-IGFIGRLE--EQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPE----------- 455 (609)
Q Consensus 391 ~~gl~~~~~~~~-i~~iGrl~--~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~----------- 455 (609)
.+++. +.++ +++-|+-. ..+++..++++++.+.+ ++++|++.-.+.... +.+++.....+.
T Consensus 199 -~~l~~--~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~ 274 (396)
T TIGR03492 199 -KPLLT--GRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL-EKLQAILEDLGWQLEGSSEDQTS 274 (396)
T ss_pred -cccCC--CCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH-HHHHHHHHhcCceecCCccccch
Confidence 03332 2244 45555542 35678899999999964 578887653222112 223332222111
Q ss_pred -----ceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcc---cccccC----cceeEec
Q 007300 456 -----KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV---DTVEEG----FTGFQMG 523 (609)
Q Consensus 456 -----~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~---e~i~~~----~~G~l~~ 523 (609)
.+... .+ ..++..+|+.||++|.. .|.+..|++++|+|+|.....+.. .+.+.. ..++.
T Consensus 275 ~~~~~~~~v~-~~-~~~~~~~l~~ADlvI~r-----SGt~T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~-- 345 (396)
T TIGR03492 275 LFQKGTLEVL-LG-RGAFAEILHWADLGIAM-----AGTATEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVF-- 345 (396)
T ss_pred hhccCceEEE-ec-hHhHHHHHHhCCEEEEC-----cCHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEe--
Confidence 12222 22 23456799999999987 456779999999999998743321 122220 12222
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007300 524 SFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 524 ~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
+...+++.+++++.+++++ ++.+.+|.++ ..+.+.-...+++..+++.
T Consensus 346 --------l~~~~~~~l~~~l~~ll~d--~~~~~~~~~~-~~~~lg~~~a~~~ia~~i~ 393 (396)
T TIGR03492 346 --------LASKNPEQAAQVVRQLLAD--PELLERCRRN-GQERMGPPGASARIAESIL 393 (396)
T ss_pred --------cCCCCHHHHHHHHHHHHcC--HHHHHHHHHH-HHHhcCCCCHHHHHHHHHH
Confidence 2567789999999999987 6666666532 2333443444455544443
No 120
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.54 E-value=1e-05 Score=84.13 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=80.4
Q ss_pred CCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEE
Q 007300 399 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 399 ~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
...+++++|..... .++++++.+ ++.+++++|.... .....++. +..|..+....+++.||++
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~--~~~~~~v~g~~~~----------~~~~~ni~-~~~~~~~~~~~~m~~ad~v 254 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKAL--PDYQFIVFGPNAA----------DPRPGNIH-VRPFSTPDFAELMAAADLV 254 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhC--CCCeEEEEcCCcc----------cccCCCEE-EeecChHHHHHHHHhCCEE
Confidence 34688999987666 667888876 5788988876531 11134465 4566667777899999999
Q ss_pred EecCCCCCCcHH-HHHHHHcCCceEEcCCCCccc------ccccCcceeEecccccccccCCCCCHHHHHHHHHHH
Q 007300 479 LIPSRFEPCGLI-QLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 547 (609)
Q Consensus 479 v~pS~~E~~gl~-~lEAma~G~PvI~s~~gg~~e------~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~l 547 (609)
|.- .|.. +.||+++|+|+|+-...+..| .+++.+.|..+ -...-+++.+.+.|+++
T Consensus 255 Is~-----~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~--------~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 255 ISK-----GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVL--------SQEDLTPERLAEFLERL 317 (318)
T ss_pred EEC-----CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEc--------ccccCCHHHHHHHHhcC
Confidence 965 4554 999999999999988766444 23333444432 01234678888877653
No 121
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.53 E-value=2.5e-05 Score=84.13 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=79.5
Q ss_pred CcEEEEEecccc---ccCHHHHHHHHhhcccCCeEEE-EEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhC
Q 007300 400 IPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 475 (609)
Q Consensus 400 ~~~i~~iGrl~~---~Kg~~~ll~a~~~l~~~~~~lv-ivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 475 (609)
.++++..|+... .+-...+++++..+ +.+++ .+|..... . ...++++......+. ..++..|
T Consensus 240 ~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~---~~~~i~~~g~~~~~--~------~~~~~~v~~~~~~p~---~~ll~~~ 305 (401)
T cd03784 240 PPVYVGFGSMVVRDPEALARLDVEAVATL---GQRAILSLGWGGLG--A------EDLPDNVRVVDFVPH---DWLLPRC 305 (401)
T ss_pred CcEEEeCCCCcccCHHHHHHHHHHHHHHc---CCeEEEEccCcccc--c------cCCCCceEEeCCCCH---HHHhhhh
Confidence 367778888753 34455666666655 55655 45544311 1 234456655444332 2479999
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC----cccccccCcceeEecccccccccCCCC--CHHHHHHHHHHHHH
Q 007300 476 DFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPV--DVAAVSTTVRRALA 549 (609)
Q Consensus 476 Dv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~l~~~~~~~~~~v~~~--d~~~la~~I~~ll~ 549 (609)
|++|.- +-..++.||+++|+|+|+....+ ..+.+.+...|... +.. +.+++.++|+++++
T Consensus 306 d~~I~h----gG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l----------~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 306 AAVVHH----GGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPAL----------DPRELTAERLAAALRRLLD 371 (401)
T ss_pred heeeec----CCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCC----------CcccCCHHHHHHHHHHHhC
Confidence 999932 33478999999999999997654 34445555566643 333 78999999999998
Q ss_pred h
Q 007300 550 T 550 (609)
Q Consensus 550 ~ 550 (609)
+
T Consensus 372 ~ 372 (401)
T cd03784 372 P 372 (401)
T ss_pred H
Confidence 5
No 122
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=1.3e-05 Score=82.70 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=120.9
Q ss_pred HHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCC-CCCCcCCCCccccccccCcchhcccchHHHH
Q 007300 308 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 386 (609)
Q Consensus 308 ~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 386 (609)
.....+.+|.+++.=|...+.+.+ .|. .++.|-|.+ |.-.+.+. ++
T Consensus 130 a~~i~~~~D~lLailPFE~~~y~k---~g~---------~~~yVGHpl~d~i~~~~~---------------------r~ 176 (381)
T COG0763 130 AVKIAKYVDHLLAILPFEPAFYDK---FGL---------PCTYVGHPLADEIPLLPD---------------------RE 176 (381)
T ss_pred HHHHHHHhhHeeeecCCCHHHHHh---cCC---------CeEEeCChhhhhcccccc---------------------HH
Confidence 344567899999999999999887 443 344554443 21112222 67
Q ss_pred HHHHHhCCCCCCCCcEEEEEec-ccc-ccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEee
Q 007300 387 ALQAEVGLPVDRNIPVIGFIGR-LEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 462 (609)
Q Consensus 387 ~~~~~~gl~~~~~~~~i~~iGr-l~~-~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~ 462 (609)
..++++|++.+.. .+.+..|+ -.+ .+-...+++|+..+.. ++.+|++--... ..+.+.....+... ......
T Consensus 177 ~ar~~l~~~~~~~-~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~--~~~~~~~~~~~~~~-~~~~~~ 252 (381)
T COG0763 177 AAREKLGIDADEK-TLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA--KYRRIIEEALKWEV-AGLSLI 252 (381)
T ss_pred HHHHHhCCCCCCC-eEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH--HHHHHHHHHhhccc-cCceEE
Confidence 7899999986653 34455554 333 5678888999999975 789999877654 32333333332221 112223
Q ss_pred cChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC-C----------------CcccccccCcceeEeccc
Q 007300 463 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-G----------------GLVDTVEEGFTGFQMGSF 525 (609)
Q Consensus 463 ~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~-g----------------g~~e~i~~~~~G~l~~~~ 525 (609)
......+..+..||+.+.. +|.+.+|+|.+|+|.|++-- . +++.++.+.. ++..+
T Consensus 253 ~~~~~~~~a~~~aD~al~a-----SGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~---ivPEl 324 (381)
T COG0763 253 LIDGEKRKAFAAADAALAA-----SGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGRE---IVPEL 324 (381)
T ss_pred ecCchHHHHHHHhhHHHHh-----ccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCc---cchHH
Confidence 3445566789999998765 69999999999999988742 2 2222222211 00000
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhh
Q 007300 526 SVDCEAVDPVDVAAVSTTVRRALATY 551 (609)
Q Consensus 526 ~~~~~~v~~~d~~~la~~I~~ll~~~ 551 (609)
.-+.-.++.+++++..++.+.
T Consensus 325 -----iq~~~~pe~la~~l~~ll~~~ 345 (381)
T COG0763 325 -----IQEDCTPENLARALEELLLNG 345 (381)
T ss_pred -----HhhhcCHHHHHHHHHHHhcCh
Confidence 002345789999999999884
No 123
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.44 E-value=1.7e-05 Score=83.56 Aligned_cols=272 Identities=14% Similarity=0.110 Sum_probs=148.2
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCch
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 304 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (609)
+||+|++.-|-.+.+..++.... .++| |.++|. |....+ ..+| ..
T Consensus 67 ~Pd~Vlv~GD~~~~la~alaA~~-------~~ip-v~Hiea----GlRs~d----------------~~~g-------~~ 111 (346)
T PF02350_consen 67 KPDAVLVLGDRNEALAAALAAFY-------LNIP-VAHIEA----GLRSGD----------------RTEG-------MP 111 (346)
T ss_dssp T-SEEEEETTSHHHHHHHHHHHH-------TT-E-EEEES---------S-----------------TTSS-------TT
T ss_pred CCCEEEEEcCCchHHHHHHHHHH-------hCCC-EEEecC----CCCccc----------------cCCC-------Cc
Confidence 59999666676667766666554 5899 555563 211100 0001 11
Q ss_pred hHHHHHHh-hcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCC-CCCCCcCCCCccccccccCcchhcccch
Q 007300 305 INWMKAGI-LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNG-MDVQEWNPLTDKYIGVKYDASTVMDAKP 382 (609)
Q Consensus 305 ~~~~k~~~-~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nG-vd~~~~~p~~~~~~~~~~~~~~~~~~~~ 382 (609)
-...|..+ +.||.-++.++..++.+.+ .|.+++ +|.++-|- +|.-.... .
T Consensus 112 de~~R~~i~~la~lhf~~t~~~~~~L~~---~G~~~~------rI~~vG~~~~D~l~~~~-------------------~ 163 (346)
T PF02350_consen 112 DEINRHAIDKLAHLHFAPTEEARERLLQ---EGEPPE------RIFVVGNPGIDALLQNK-------------------E 163 (346)
T ss_dssp HHHHHHHHHHH-SEEEESSHHHHHHHHH---TT--GG------GEEE---HHHHHHHHHH-------------------H
T ss_pred hhhhhhhhhhhhhhhccCCHHHHHHHHh---cCCCCC------eEEEEChHHHHHHHHhH-------------------H
Confidence 13344444 4699999999999999997 788766 77777552 33211100 0
Q ss_pred HHHHHH-HHHhCCCCCCCCcEEEEEecccc---ccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCce
Q 007300 383 LLKEAL-QAEVGLPVDRNIPVIGFIGRLEE---QKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKA 457 (609)
Q Consensus 383 ~~~~~~-~~~~gl~~~~~~~~i~~iGrl~~---~Kg~~~ll~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~~v 457 (609)
...+.+ ...+... ..+..+++..=|.+. ......+.++++.|.+ .++++++.....+...+.+.+...++ .++
T Consensus 164 ~~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v 241 (346)
T PF02350_consen 164 EIEEKYKNSGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNV 241 (346)
T ss_dssp TTCC-HHHHHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTE
T ss_pred HHhhhhhhHHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCE
Confidence 000000 1111001 123344444434332 3456777788887766 58999998886666777777666666 478
Q ss_pred EEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC-CCcccccccCcceeEecccccccccCCCCC
Q 007300 458 RGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVDCEAVDPVD 536 (609)
Q Consensus 458 ~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~-gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d 536 (609)
.............+++.|+++|-- .|.++-||..+|+|+|.-.. |--.+.+..+.+-+ + ..|
T Consensus 242 ~~~~~l~~~~~l~ll~~a~~vvgd-----SsGI~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v-----------~~~ 304 (346)
T PF02350_consen 242 RLIEPLGYEEYLSLLKNADLVVGD-----SSGIQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-V-----------GTD 304 (346)
T ss_dssp EEE----HHHHHHHHHHESEEEES-----SHHHHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-E-----------TSS
T ss_pred EEECCCCHHHHHHHHhcceEEEEc-----CccHHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-e-----------CCC
Confidence 888888888888899999999844 45444499999999999954 55556666665544 4 489
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007300 537 VAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 537 ~~~la~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
.+++.++|.+++.+ ...+.++.. ....|.-...+++..++++
T Consensus 305 ~~~I~~ai~~~l~~--~~~~~~~~~--~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 305 PEAIIQAIEKALSD--KDFYRKLKN--RPNPYGDGNASERIVEILK 346 (346)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHC--S--TT-SS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--hHHHHhhcc--CCCCCCCCcHHHHHHHhhC
Confidence 99999999999986 344444322 2345666666777766653
No 124
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.33 E-value=5.2e-05 Score=77.47 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=70.0
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEE-EEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQI-IVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~l-vivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
.++++.|..++.+....+++++.++. .++++ +++|.+.+ ..+.++++....+ ++... -..+.+..+|+.||++|
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~-~~~~i~vv~G~~~~-~~~~l~~~~~~~~-~i~~~--~~~~~m~~lm~~aDl~I 246 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ-INISITLVTGSSNP-NLDELKKFAKEYP-NIILF--IDVENMAELMNEADLAI 246 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc-cCceEEEEECCCCc-CHHHHHHHHHhCC-CEEEE--eCHHHHHHHHHHCCEEE
Confidence 57899998888777788889988763 34444 36777654 3455666665544 45532 34456777999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCC
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~ 506 (609)
.+ .|.++.|++++|+|+|+-..
T Consensus 247 s~-----~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 247 GA-----AGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred EC-----CchHHHHHHHcCCCEEEEEe
Confidence 84 77999999999999998765
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.30 E-value=9.7e-06 Score=73.34 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=28.3
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
|||+|+... ..++.+++.+|.++||+|.++++..
T Consensus 1 KIl~i~~~~---------~~~~~~~~~~L~~~g~~V~ii~~~~ 34 (139)
T PF13477_consen 1 KILLIGNTP---------STFIYNLAKELKKRGYDVHIITPRN 34 (139)
T ss_pred CEEEEecCc---------HHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 788998752 2368899999999999999999963
No 126
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=0.0018 Score=67.46 Aligned_cols=224 Identities=17% Similarity=0.106 Sum_probs=142.3
Q ss_pred hcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCC-CCCCcCCCCccccccccCcchhcccchHHHHHHHHH
Q 007300 313 LESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAE 391 (609)
Q Consensus 313 ~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (609)
..||.-++.++..++.+.+ -|.+.+ +|.++-|-+ |.-.+.-. +..........
T Consensus 144 ~~S~~hfapte~ar~nLl~---EG~~~~------~IfvtGnt~iDal~~~~~-----------------~~~~~~~~~~~ 197 (383)
T COG0381 144 HLSDLHFAPTEIARKNLLR---EGVPEK------RIFVTGNTVIDALLNTRD-----------------RVLEDSKILAK 197 (383)
T ss_pred HhhhhhcCChHHHHHHHHH---cCCCcc------ceEEeCChHHHHHHHHHh-----------------hhccchhhHHh
Confidence 3589999999999999997 677655 788887754 21111100 00001111222
Q ss_pred -hCCCCCCCCcEEEEEecccc-ccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHH
Q 007300 392 -VGLPVDRNIPVIGFIGRLEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 467 (609)
Q Consensus 392 -~gl~~~~~~~~i~~iGrl~~-~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~ 467 (609)
++.. .++.+++..=|-+. .+++..+++++.++.+ ++++++.--...+..++ +.........++..+..+....
T Consensus 198 ~~~~~--~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e-~~~~~L~~~~~v~li~pl~~~~ 274 (383)
T COG0381 198 GLDDK--DKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRE-LVLKRLKNVERVKLIDPLGYLD 274 (383)
T ss_pred hhccc--cCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhH-HHHHHhCCCCcEEEeCCcchHH
Confidence 2222 22355566666553 3899999999998876 46666654433322222 2222222223588777888888
Q ss_pred HHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC-cccccccCcceeEecccccccccCCCCCHHHHHHHHHH
Q 007300 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG-LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 546 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg-~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ 546 (609)
.+.++..|-+++- ..|..+=||-..|+||++-..+. -+|.+..| +-.+ -..|.+.+.+.+..
T Consensus 275 f~~L~~~a~~ilt-----DSGgiqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~l-----------vg~~~~~i~~~~~~ 337 (383)
T COG0381 275 FHNLMKNAFLILT-----DSGGIQEEAPSLGKPVLVLRDTTERPEGVEAG-TNIL-----------VGTDEENILDAATE 337 (383)
T ss_pred HHHHHHhceEEEe-----cCCchhhhHHhcCCcEEeeccCCCCccceecC-ceEE-----------eCccHHHHHHHHHH
Confidence 8888999966653 36778999999999999987544 45555543 4444 34677999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH
Q 007300 547 ALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 547 ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
++++ .+.+++|+.. ...|.--...++..+++++-..
T Consensus 338 ll~~--~~~~~~m~~~--~npYgdg~as~rIv~~l~~~~~ 373 (383)
T COG0381 338 LLED--EEFYERMSNA--KNPYGDGNASERIVEILLNYFD 373 (383)
T ss_pred HhhC--hHHHHHHhcc--cCCCcCcchHHHHHHHHHHHhh
Confidence 9998 6777777653 4566666677777777765543
No 127
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.11 E-value=0.00098 Score=70.39 Aligned_cols=192 Identities=19% Similarity=0.181 Sum_probs=117.6
Q ss_pred HHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHH
Q 007300 308 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEA 387 (609)
Q Consensus 308 ~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (609)
.+..-+.+|.+++.=|...+.+.+ .|+ +++.+-|.. .+...+..+ +..
T Consensus 127 ~~~i~~~~D~ll~ifPFE~~~y~~---~g~---------~~~~VGHPl-~d~~~~~~~-------------------~~~ 174 (373)
T PF02684_consen 127 AKKIKKYVDHLLVIFPFEPEFYKK---HGV---------PVTYVGHPL-LDEVKPEPD-------------------RAE 174 (373)
T ss_pred HHHHHHHHhheeECCcccHHHHhc---cCC---------CeEEECCcc-hhhhccCCC-------------------HHH
Confidence 344556789999999999999887 443 455555543 111111111 344
Q ss_pred HHHHhCCCCCCCCcE-EEEEec-ccc-ccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEee
Q 007300 388 LQAEVGLPVDRNIPV-IGFIGR-LEE-QKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 462 (609)
Q Consensus 388 ~~~~~gl~~~~~~~~-i~~iGr-l~~-~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~ 462 (609)
.++.+ ++.+ .++ .+..|+ -.+ .+.+..+++++.++.+ +++++++..... ...+.+.+.....+..+....
T Consensus 175 ~~~~~-l~~~--~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~-~~~~~i~~~~~~~~~~~~~~~- 249 (373)
T PF02684_consen 175 AREKL-LDPD--KPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE-VHEELIEEILAEYPPDVSIVI- 249 (373)
T ss_pred HHHhc-CCCC--CcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH-HHHHHHHHHHHhhCCCCeEEE-
Confidence 45555 5543 354 455554 334 4566889999999876 689998876544 344445555544443333222
Q ss_pred cChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC-C----------------CcccccccCcceeEeccc
Q 007300 463 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST-G----------------GLVDTVEEGFTGFQMGSF 525 (609)
Q Consensus 463 ~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~-g----------------g~~e~i~~~~~G~l~~~~ 525 (609)
........++.||+.+.. .|.+.+|++.+|+|.|+.-- + |++.++.+.. ++..+
T Consensus 250 -~~~~~~~~m~~ad~al~~-----SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~---v~PEl 320 (373)
T PF02684_consen 250 -IEGESYDAMAAADAALAA-----SGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGRE---VVPEL 320 (373)
T ss_pred -cCCchHHHHHhCcchhhc-----CCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCC---cchhh
Confidence 223344689999998876 58999999999999988743 2 2222222211 00000
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHh
Q 007300 526 SVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 526 ~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
+-+..+++.+++.+..++.+
T Consensus 321 -----iQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 321 -----IQEDATPENIAAELLELLEN 340 (373)
T ss_pred -----hcccCCHHHHHHHHHHHhcC
Confidence 12456889999999999987
No 128
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=0.0015 Score=68.56 Aligned_cols=211 Identities=17% Similarity=0.100 Sum_probs=133.2
Q ss_pred hHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHH
Q 007300 305 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLL 384 (609)
Q Consensus 305 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
-.+.+..++..|.|+..|+..++++.+ .|.. ++.+.-| +....... ......
T Consensus 168 ~~~~~~~~~~i~li~aQse~D~~Rf~~---LGa~--------~v~v~GN---lKfd~~~~--------------~~~~~~ 219 (419)
T COG1519 168 KFLARLLFKNIDLILAQSEEDAQRFRS---LGAK--------PVVVTGN---LKFDIEPP--------------PQLAAE 219 (419)
T ss_pred HHHHHHHHHhcceeeecCHHHHHHHHh---cCCc--------ceEEecc---eeecCCCC--------------hhhHHH
Confidence 355677889999999999999999998 6654 3333332 22211111 112334
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEee
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK 462 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~ 462 (609)
.+.+|..++.+ .++++..+.. ...-+.++++++.+++ +|..++++=-.+ +-.+.++++..+.+-.+..+-.
T Consensus 220 ~~~~r~~l~~~----r~v~iaaSTH--~GEeei~l~~~~~l~~~~~~~llIlVPRHp-ERf~~v~~l~~~~gl~~~~rS~ 292 (419)
T COG1519 220 LAALRRQLGGH----RPVWVAASTH--EGEEEIILDAHQALKKQFPNLLLILVPRHP-ERFKAVENLLKRKGLSVTRRSQ 292 (419)
T ss_pred HHHHHHhcCCC----CceEEEecCC--CchHHHHHHHHHHHHhhCCCceEEEecCCh-hhHHHHHHHHHHcCCeEEeecC
Confidence 56777877743 4678777772 3334568999998877 577777765544 4555666666655432221111
Q ss_pred c-------------ChHHHHHHHHhCcEEEecCCC-CCCcHHHHHHHHcCCceEEcCC-CCcccc---cccCcceeEecc
Q 007300 463 F-------------NIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAST-GGLVDT---VEEGFTGFQMGS 524 (609)
Q Consensus 463 ~-------------~~~~~~~~l~~aDv~v~pS~~-E~~gl~~lEAma~G~PvI~s~~-gg~~e~---i~~~~~G~l~~~ 524 (609)
- .--++..+|..||+.++--.+ +--|--++|+.++|+|||.-.. --..|+ +...+.|+.+
T Consensus 293 ~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v-- 370 (419)
T COG1519 293 GDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQV-- 370 (419)
T ss_pred CCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEE--
Confidence 1 112344689999998776444 4456679999999999998753 233333 3344556654
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 007300 525 FSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 564 (609)
Q Consensus 525 ~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 564 (609)
.|.+.+++.+..++.+ .+.+.+|++++.
T Consensus 371 ----------~~~~~l~~~v~~l~~~--~~~r~~~~~~~~ 398 (419)
T COG1519 371 ----------EDADLLAKAVELLLAD--EDKREAYGRAGL 398 (419)
T ss_pred ----------CCHHHHHHHHHHhcCC--HHHHHHHHHHHH
Confidence 5577888888888776 666677766653
No 129
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.10 E-value=0.00096 Score=73.69 Aligned_cols=154 Identities=15% Similarity=0.141 Sum_probs=97.4
Q ss_pred HHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCC-CCCCcCCCCccccccccCcchhcccchHHHH
Q 007300 308 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGM-DVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 386 (609)
Q Consensus 308 ~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGv-d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 386 (609)
.+..-+.+|.+++.=|...+.+.+ .|+ +++.+-|.. |. ..+.. .++
T Consensus 355 ikki~k~vD~ll~IfPFE~~~y~~---~gv---------~v~yVGHPL~d~--i~~~~-------------------~~~ 401 (608)
T PRK01021 355 KTILEKYLDLLLLILPFEQNLFKD---SPL---------RTVYLGHPLVET--ISSFS-------------------PNL 401 (608)
T ss_pred HHHHHHHhhhheecCccCHHHHHh---cCC---------CeEEECCcHHhh--cccCC-------------------CHH
Confidence 344566789999999999999886 443 455555543 22 11111 155
Q ss_pred HHHHHhCCCCCCCCcEEEEEec-ccc-ccCHHHHHHHHh--hcccCCeEEEEEeCCChhhHHHHHHHHHhCC-CceEEEe
Q 007300 387 ALQAEVGLPVDRNIPVIGFIGR-LEE-QKGSDILAAAIP--HFIKENVQIIVLGTGKKPMEKQLEQLEILYP-EKARGVA 461 (609)
Q Consensus 387 ~~~~~~gl~~~~~~~~i~~iGr-l~~-~Kg~~~ll~a~~--~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~-~~v~~~~ 461 (609)
+.++++|++.+. ..+.+..|+ -.+ .+....+++|++ .+.+ +.++++..... ...+.++++....+ ..+...
T Consensus 402 ~~r~~lgl~~~~-~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~-~l~fvvp~a~~-~~~~~i~~~~~~~~~~~~~ii- 477 (608)
T PRK01021 402 SWKEQLHLPSDK-PIVAAFPGSRRGDILRNLTIQVQAFLASSLAS-THQLLVSSANP-KYDHLILEVLQQEGCLHSHIV- 477 (608)
T ss_pred HHHHHcCCCCCC-CEEEEECCCCHHHHHHHHHHHHHHHHHHHhcc-CeEEEEecCch-hhHHHHHHHHhhcCCCCeEEe-
Confidence 678889986443 234455664 334 567888999998 5543 68887754332 24455555544322 112221
Q ss_pred ecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 462 KFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 462 ~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
......+++++||+.+.. +|.+.+|++.+|+|.|+.-
T Consensus 478 --~~~~~~~~m~aaD~aLaa-----SGTaTLEaAL~g~PmVV~Y 514 (608)
T PRK01021 478 --PSQFRYELMRECDCALAK-----CGTIVLETALNQTPTIVTC 514 (608)
T ss_pred --cCcchHHHHHhcCeeeec-----CCHHHHHHHHhCCCEEEEE
Confidence 122235799999999976 5899999999999998864
No 130
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.07 E-value=0.0029 Score=70.10 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=91.3
Q ss_pred cEEEEEecccc-----ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHH--H
Q 007300 401 PVIGFIGRLEE-----QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII--A 473 (609)
Q Consensus 401 ~~i~~iGrl~~-----~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l--~ 473 (609)
.+++..|.... .+-...+++|+.++ +.++++..++.. . . ...+.++.....++.. .++ .
T Consensus 298 ~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l---~~~viw~~~~~~-~-~------~~~p~Nv~i~~w~Pq~---~lL~hp 363 (507)
T PHA03392 298 VVYVSFGSSIDTNDMDNEFLQMLLRTFKKL---PYNVLWKYDGEV-E-A------INLPANVLTQKWFPQR---AVLKHK 363 (507)
T ss_pred EEEEECCCCCcCCCCCHHHHHHHHHHHHhC---CCeEEEEECCCc-C-c------ccCCCceEEecCCCHH---HHhcCC
Confidence 67777888642 33456677777766 457776654431 1 1 2345667665555544 367 4
Q ss_pred hCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC----cccccccCcceeEecccccccccCCC--CCHHHHHHHHHHH
Q 007300 474 GADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDP--VDVAAVSTTVRRA 547 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~l~~~~~~~~~~v~~--~d~~~la~~I~~l 547 (609)
.++++|. -|=..++.||+.+|+|+|+-...+ ....+++.+.|... +. -+.+++.++|.++
T Consensus 364 ~v~~fIt----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l----------~~~~~t~~~l~~ai~~v 429 (507)
T PHA03392 364 NVKAFVT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRAL----------DTVTVSAAQLVLAIVDV 429 (507)
T ss_pred CCCEEEe----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEe----------ccCCcCHHHHHHHHHHH
Confidence 5777773 233457999999999999987543 44444455667654 33 3678999999999
Q ss_pred HHhhC-HHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 007300 548 LATYG-TQALAEMMKNGMAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 548 l~~~~-~~~~~~~~~~~~~~~fs~~~~a~~~~~~~ 581 (609)
++++. .+..+++++....+..+-..-+-.|.+..
T Consensus 430 l~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v 464 (507)
T PHA03392 430 IENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHV 464 (507)
T ss_pred hCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 98732 12333333333334444545555555443
No 131
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.95 E-value=0.00052 Score=73.95 Aligned_cols=184 Identities=15% Similarity=0.043 Sum_probs=103.5
Q ss_pred HHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCChhhHHHHHHHHHhCC---CceEEEee
Q 007300 388 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYP---EKARGVAK 462 (609)
Q Consensus 388 ~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~~ 462 (609)
.|+.+|||.+. .+++...+ ..|=.+..++++.++.+ |+.+|++...+. ..++.+++...+.+ +++.+...
T Consensus 275 ~R~~~gLp~d~--vvF~~fn~--~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~-~~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 275 TRAQYGLPEDA--VVFGSFNN--LFKISPETLDLWARILKAVPNSRLWLLRFPA-SGEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp ETGGGT--SSS--EEEEE-S---GGG--HHHHHHHHHHHHHSTTEEEEEEETST-THHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred CHHHcCCCCCc--eEEEecCc--cccCCHHHHHHHHHHHHhCCCcEEEEeeCCH-HHHHHHHHHHHHcCCChhhEEEcCC
Confidence 37889999654 55555554 47777788888887766 899998876543 23455666555554 46776554
Q ss_pred cChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHH
Q 007300 463 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVST 542 (609)
Q Consensus 463 ~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~ 542 (609)
-+.++.-..+..+|+++=|..+ +-+.+.+||+.+|+|||+-....+..=+.- +++- ...|.-.-..|.+++.+
T Consensus 350 ~~~~ehl~~~~~~DI~LDT~p~-nG~TTt~dALwmGVPvVTl~G~~~~sR~~a---SiL~---~lGl~ElIA~s~~eYv~ 422 (468)
T PF13844_consen 350 APREEHLRRYQLADICLDTFPY-NGGTTTLDALWMGVPVVTLPGETMASRVGA---SILR---ALGLPELIADSEEEYVE 422 (468)
T ss_dssp --HHHHHHHGGG-SEEE--SSS---SHHHHHHHHHT--EEB---SSGGGSHHH---HHHH---HHT-GGGB-SSHHHHHH
T ss_pred CCHHHHHHHhhhCCEEeeCCCC-CCcHHHHHHHHcCCCEEeccCCCchhHHHH---HHHH---HcCCchhcCCCHHHHHH
Confidence 4444444578999999987432 346889999999999998764333221110 0000 00011113467899999
Q ss_pred HHHHHHHhhCHHHHHHHHH---HHHH--hhCCchHHHHHHHHHHHHHH
Q 007300 543 TVRRALATYGTQALAEMMK---NGMA--QDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 543 ~I~~ll~~~~~~~~~~~~~---~~~~--~~fs~~~~a~~~~~~~~~l~ 585 (609)
.-.++..+ .+.++++.+ +.+. .-|+-+..++++++.|++++
T Consensus 423 ~Av~La~D--~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 423 IAVRLATD--PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCC--HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 99898887 444443332 2332 34899999999999999874
No 132
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=97.90 E-value=0.0015 Score=68.14 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=71.8
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEe
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
.+++|.|. .+...+++++.++ +++++++ |.... .. . .++.++... .|..+.+..+|..||++|.
T Consensus 190 ~iLv~~g~----~~~~~l~~~l~~~--~~~~~i~-~~~~~-~~---~----~~~~~v~~~-~~~~~~~~~~l~~ad~vI~ 253 (321)
T TIGR00661 190 YILVYIGF----EYRYKILELLGKI--ANVKFVC-YSYEV-AK---N----SYNENVEIR-RITTDNFKELIKNAELVIT 253 (321)
T ss_pred cEEEECCc----CCHHHHHHHHHhC--CCeEEEE-eCCCC-Cc---c----ccCCCEEEE-ECChHHHHHHHHhCCEEEE
Confidence 35566544 3456777777666 3555544 43221 11 1 223456554 4555567789999999998
Q ss_pred cCCCCCCcHHHHHHHHcCCceEEcCCCCccc------ccccCcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 481 PSRFEPCGLIQLHAMRYGTVPIVASTGGLVD------TVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 481 pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e------~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
-+-+ .++.||+++|+|+|.....+..| .+.+...|... +..+. ++.+++...+.
T Consensus 254 ~~G~----~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l----------~~~~~-~~~~~~~~~~~ 313 (321)
T TIGR00661 254 HGGF----SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIAL----------EYKEL-RLLEAILDIRN 313 (321)
T ss_pred CCCh----HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEc----------ChhhH-HHHHHHHhccc
Confidence 6532 36999999999999988766444 34455667654 66665 44444444443
No 133
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.83 E-value=0.0024 Score=64.08 Aligned_cols=186 Identities=19% Similarity=0.222 Sum_probs=108.4
Q ss_pred HHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHH
Q 007300 309 KAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEAL 388 (609)
Q Consensus 309 k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (609)
+..+..||.+++++......+.. +|-.+.++..-..+..+.| ...|.|. .++
T Consensus 121 kl~~Pla~~ii~P~~~~~~~~~~---~G~~p~~i~~~~giae~~~---v~~f~pd----------------------~ev 172 (346)
T COG1817 121 KLTLPLADVIITPEAIDEEELLD---FGADPNKISGYNGIAELAN---VYGFVPD----------------------PEV 172 (346)
T ss_pred hcchhhhhheecccccchHHHHH---hCCCccceecccceeEEee---cccCCCC----------------------HHH
Confidence 44577899999999988888775 6766654333233333333 2224443 356
Q ss_pred HHHhCCCCCCCCcEEEEE---ec--cccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec
Q 007300 389 QAEVGLPVDRNIPVIGFI---GR--LEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF 463 (609)
Q Consensus 389 ~~~~gl~~~~~~~~i~~i---Gr--l~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~ 463 (609)
-+++|+..+. ..+++=. |. ...+++.+.+.++++.|.+.. .|++-. .+...+.++..... +. ..
T Consensus 173 lkeLgl~~~~-~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g--iV~ipr-~~~~~eife~~~n~----i~--pk- 241 (346)
T COG1817 173 LKELGLEEGE-TYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG--IVLIPR-EKEQAEIFEGYRNI----II--PK- 241 (346)
T ss_pred HHHcCCCCCC-ceEEEeeccccceeeccccchhhHHHHHHHHHhCc--EEEecC-chhHHHHHhhhccc----cC--Cc-
Confidence 7889987652 2232211 11 234678888889999886544 444432 22233333332211 10 11
Q ss_pred ChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCC---CcccccccCcceeEecccccccccCCCCCHHHH
Q 007300 464 NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTG---GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAV 540 (609)
Q Consensus 464 ~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~g---g~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~l 540 (609)
..-+.-+++-.|++++ -+-|.-.-||...|+|.|++.-| +.-+... ..|.++ ...|+.+.
T Consensus 242 ~~vD~l~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pGkll~vdk~li--e~G~~~----------~s~~~~~~ 304 (346)
T COG1817 242 KAVDTLSLLYYATLVI-----GAGGTMAREAALLGTPAISCYPGKLLAVDKYLI--EKGLLY----------HSTDEIAI 304 (346)
T ss_pred ccccHHHHHhhhheee-----cCCchHHHHHHHhCCceEEecCCccccccHHHH--hcCcee----------ecCCHHHH
Confidence 1111113677788877 34567789999999999999854 2223333 357766 66777777
Q ss_pred HHHHHHHHHh
Q 007300 541 STTVRRALAT 550 (609)
Q Consensus 541 a~~I~~ll~~ 550 (609)
.+.+.+.+.+
T Consensus 305 ~~~a~~~l~~ 314 (346)
T COG1817 305 VEYAVRNLKY 314 (346)
T ss_pred HHHHHHHhhc
Confidence 7777777765
No 134
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.79 E-value=0.002 Score=69.45 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=82.9
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEe
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
++.+..|..... .+++-.++..+.+.+.++++...+.+ ......+.++.....++.. .++..||++|.
T Consensus 239 ~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~-------~~~~~~p~n~~v~~~~p~~---~~l~~ad~vI~ 306 (406)
T COG1819 239 IVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGAR-------DTLVNVPDNVIVADYVPQL---ELLPRADAVIH 306 (406)
T ss_pred eEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEeccccc-------cccccCCCceEEecCCCHH---HHhhhcCEEEe
Confidence 455666666544 44444444445445888888764421 1112345556554444444 37999999996
Q ss_pred cCCCCCCcHHHHHHHHcCCceEEcCCCC----cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 481 PSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 481 pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
.. =-.++.||+.+|+|+|+-..+. ..+-+++-..|... -.+....+.++++|++++++
T Consensus 307 hG----G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l--------~~~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 307 HG----GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIAL--------PFEELTEERLRAAVNEVLAD 368 (406)
T ss_pred cC----CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceec--------CcccCCHHHHHHHHHHHhcC
Confidence 54 2346889999999999876553 44556667788765 23468899999999999997
No 135
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=97.75 E-value=0.0093 Score=60.37 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=111.3
Q ss_pred cEEEEEeccc-cccCHHHHHHHHhhcccCCeEEEE-EeC--CChhhHHHHHHHHHhC-C-CceEEEeec-ChHHHHHHHH
Q 007300 401 PVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIV-LGT--GKKPMEKQLEQLEILY-P-EKARGVAKF-NIPLAHMIIA 473 (609)
Q Consensus 401 ~~i~~iGrl~-~~Kg~~~ll~a~~~l~~~~~~lvi-vG~--g~~~~~~~l~~l~~~~-~-~~v~~~~~~-~~~~~~~~l~ 473 (609)
++.+.+|+-. +..++..+++++++....++++++ +|- |.+.|.+++.+.+.++ + +++.....+ +-++...+++
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~ 225 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLR 225 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHH
Confidence 4666677754 778899999999988778999887 455 6788989998888874 4 467666555 5556667999
Q ss_pred hCcEEEecCC-CCCCcHHHHHHHHcCCceEEcC-CCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhh
Q 007300 474 GADFILIPSR-FEPCGLIQLHAMRYGTVPIVAS-TGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 551 (609)
Q Consensus 474 ~aDv~v~pS~-~E~~gl~~lEAma~G~PvI~s~-~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 551 (609)
.||+.++--. .++.|+.++ .+..|+||+-+. +.-..++.+.+..- +| + -+.-|...+.++=
T Consensus 226 ~~Dl~~f~~~RQQgiGnl~l-Li~~G~~v~l~r~n~fwqdl~e~gv~V-lf---~-----~d~L~~~~v~e~~------- 288 (322)
T PRK02797 226 QCDLGYFIFARQQGIGTLCL-LIQLGKPVVLSRDNPFWQDLTEQGLPV-LF---T-----GDDLDEDIVREAQ------- 288 (322)
T ss_pred hCCEEEEeechhhHHhHHHH-HHHCCCcEEEecCCchHHHHHhCCCeE-Ee---c-----CCcccHHHHHHHH-------
Confidence 9999998865 489998877 799999998885 55566666555443 23 0 0222222222211
Q ss_pred CHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Q 007300 552 GTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLE 585 (609)
Q Consensus 552 ~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l~ 585 (609)
.++...-++.+. |+-+...+.|.++|..+.
T Consensus 289 --rql~~~dk~~I~--Ff~pn~~~~W~~~l~~~~ 318 (322)
T PRK02797 289 --RQLASVDKNIIA--FFSPNYLQGWRNALAIAA 318 (322)
T ss_pred --HHHHhhCcceee--ecCHhHHHHHHHHHHHhh
Confidence 111222222233 999999999999998764
No 136
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.0047 Score=66.81 Aligned_cols=183 Identities=15% Similarity=0.068 Sum_probs=110.3
Q ss_pred HHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeCCC-hhhHHHHHHHHHhCC---CceEEEee
Q 007300 389 QAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGK-KPMEKQLEQLEILYP---EKARGVAK 462 (609)
Q Consensus 389 ~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~g~-~~~~~~l~~l~~~~~---~~v~~~~~ 462 (609)
|.++|+|.+. .++++.+ ...|-...+++..-++.+ |+-.|++.|.|+ +...+.+++++.+.+ .++++..+
T Consensus 421 R~~lglp~~a--vVf~c~~--n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~ 496 (620)
T COG3914 421 RAQLGLPEDA--VVFCCFN--NYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP 496 (620)
T ss_pred hhhcCCCCCe--EEEEecC--CcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC
Confidence 6788998654 3333333 456654555555444444 788888888765 568889999998876 46777777
Q ss_pred cChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcc-----ccccc-CcceeEecccccccccCCCCC
Q 007300 463 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV-----DTVEE-GFTGFQMGSFSVDCEAVDPVD 536 (609)
Q Consensus 463 ~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~-----e~i~~-~~~G~l~~~~~~~~~~v~~~d 536 (609)
-+.+....-|.-||+++=+.-+ +-..+.+||+.+|+|||+-..--+. .++.. |..-++ . .+
T Consensus 497 ~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~v-----------A-~s 563 (620)
T COG3914 497 APNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELV-----------A-DS 563 (620)
T ss_pred CCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhh-----------c-CC
Confidence 7777777789999999966543 3356799999999999875421100 01111 111111 1 33
Q ss_pred HHHHHHHHHHHHHhhC-HHHHHHHHHHHHH--hhCCchHHHHHHHHHHHHHHHcC
Q 007300 537 VAAVSTTVRRALATYG-TQALAEMMKNGMA--QDLSWKGPAKKWEETLLNLEVAG 588 (609)
Q Consensus 537 ~~~la~~I~~ll~~~~-~~~~~~~~~~~~~--~~fs~~~~a~~~~~~~~~l~~~~ 588 (609)
.+++.+.-.++-.+.. ..+.+..-++.+. .-|+.+..+++++.+|.++....
T Consensus 564 ~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y~~M~~~y 618 (620)
T COG3914 564 RADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLYWGMWSEY 618 (620)
T ss_pred HHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHHHHHHHhh
Confidence 3444443333333310 1111111111122 25889999999999999998754
No 137
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=97.37 E-value=0.00032 Score=74.67 Aligned_cols=185 Identities=15% Similarity=0.220 Sum_probs=89.5
Q ss_pred ceEEEEEeec---------CCccccchHHHHhhchhHHHHhC--------CC----eEEEEeecCCCccccCCCceEEEE
Q 007300 85 LNILFVGTEV---------APWSKTGGLGDVLGGLPPALAAN--------GH----RVMTIAPRYDQYKDAWDTDVVIEL 143 (609)
Q Consensus 85 MkIl~vs~~~---------~P~~~~GG~~~~~~~La~aL~~~--------Gh----~V~vit~~~~~~~~~~~~~~~~~~ 143 (609)
-+|++++..- .|+ +||.-.++.+++++|.+. |. +|.++|..-+... ........+.
T Consensus 273 f~vvliSpHG~f~q~nvLG~pD--TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~-~t~~~q~le~ 349 (550)
T PF00862_consen 273 FNVVLISPHGYFGQENVLGRPD--TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAK-GTTCNQRLEK 349 (550)
T ss_dssp SEEEEE--SS--STTSTTSSTT--SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTT-CGGGTSSEEE
T ss_pred EEEEEEcCccccccccccCCCC--CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCc-CCCccccccc
Confidence 3899999741 255 999999999999999763 44 4778875533211 1111223322
Q ss_pred EeCCEEeeEEEEEeeEcCeeEEEEeCcchhhh--hcCCCCCeeccCCCCCCCcchHHHHHHHHHHHHH-hhhhhccCCCC
Q 007300 144 KVGDKIEKVRFFHCHKRGVDRVFVDHPWFLAK--VWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALE-APRILNLNSNK 220 (609)
Q Consensus 144 ~~~~~~~~~~~~~~~~~gv~~~~v~~~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~ 220 (609)
..+ .++.++.+.+.++-+- .+ +.|+.| +| +| ..+ |...+.+ +...+
T Consensus 350 ~~g--t~~a~IlRvPF~~~~g-i~--~kwisrf~lW------Py-----------Le~---fa~d~~~~i~~e~------ 398 (550)
T PF00862_consen 350 VSG--TENARILRVPFGPEKG-IL--RKWISRFDLW------PY-----------LEE---FADDAEREILAEL------ 398 (550)
T ss_dssp ETT--ESSEEEEEE-ESESTE-EE---S---GGG-G------GG-----------HHH---HHHHHHHHHHHHH------
T ss_pred cCC--CCCcEEEEecCCCCcc-hh--hhccchhhch------hh-----------HHH---HHHHHHHHHHHHh------
Confidence 222 2333433332221110 00 112222 22 11 122 2233332 22333
Q ss_pred CCCCCCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCc
Q 007300 221 YFSGPYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPV 300 (609)
Q Consensus 221 ~~~~~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 300 (609)
.++||+| |.|.....+++.++... .++|.+++-|...-+ .+..++..+-.+...+. |
T Consensus 399 --~~~PdlI-~GnYsDgnlvA~LLs~~-------lgv~~~~iaHsLek~-Ky~~s~~~w~e~e~~Yh----f-------- 455 (550)
T PF00862_consen 399 --QGKPDLI-IGNYSDGNLVASLLSRK-------LGVTQCFIAHSLEKT-KYEDSDLYWKEIEEKYH----F-------- 455 (550)
T ss_dssp --TS--SEE-EEEHHHHHHHHHHHHHH-------HT-EEEEE-SS-HHH-HHHTTTTTSHHHHHHH-----H--------
T ss_pred --CCCCcEE-EeccCcchHHHHHHHhh-------cCCceehhhhccccc-cccccCCCHHHHHhhcc----c--------
Confidence 2369999 99988888888888877 599999999986431 11111111111111111 0
Q ss_pred CCchhHHHHHHhhcCCEEEeeCHHHHH
Q 007300 301 RGRKINWMKAGILESDMVLTVSPHYAQ 327 (609)
Q Consensus 301 ~~~~~~~~k~~~~~ad~vi~vS~~~~~ 327 (609)
...+......++.||.|||.+.....
T Consensus 456 -s~qftAd~iamn~adfIItST~QEI~ 481 (550)
T PF00862_consen 456 -SCQFTADLIAMNAADFIITSTYQEIA 481 (550)
T ss_dssp -HHHHHHHHHHHHHSSEEEESSHHHHH
T ss_pred -hhhhhHHHHHhhcCCEEEEcchHhhc
Confidence 12344556678899999998765444
No 138
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.24 E-value=0.036 Score=57.42 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=121.3
Q ss_pred CeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcc
Q 007300 347 GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI 426 (609)
Q Consensus 347 ~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~ 426 (609)
++..++.++|.+.|.|.+.. ..-.--+.++|+-.+. .++.++++.
T Consensus 162 ~~~~~~~a~d~~~~~~i~~d------------------------------a~~~~dL~~ign~~pD-----r~e~~ke~~ 206 (373)
T COG4641 162 NCYYLPWAVDDSLFHPIPPD------------------------------ASYDVDLNLIGNPYPD-----RVEEIKEFF 206 (373)
T ss_pred ceeccCccCCchhcccCCcc------------------------------ccceeeeEEecCCCcc-----HHHHHHHHh
Confidence 78889999999998876521 0011257888876654 444444442
Q ss_pred c-C------CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecCh-HHHHHHHHhCcEEEecCCC---CC---CcHHHH
Q 007300 427 K-E------NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI-PLAHMIIAGADFILIPSRF---EP---CGLIQL 492 (609)
Q Consensus 427 ~-~------~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~-~~~~~~l~~aDv~v~pS~~---E~---~gl~~l 492 (609)
- + +-++.+.|..- -....... ...++...+.++. ...+..++.-|+.+.-++. ++ +.+-+.
T Consensus 207 ~~ps~kl~v~rr~~~~g~~y--~~~~~~~~---~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvF 281 (373)
T COG4641 207 VEPSFKLMVDRRFYVLGPRY--PDDIWGRT---WEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVF 281 (373)
T ss_pred hccchhhhccceeeecCCcc--chhhhccc---ccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHH
Confidence 2 1 34566667651 01111110 1112223333333 4455567777777665543 22 367899
Q ss_pred HHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHhhCCch
Q 007300 493 HAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG-TQALAEMMKNGMAQDLSWK 571 (609)
Q Consensus 493 EAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~-~~~~~~~~~~~~~~~fs~~ 571 (609)
|+++||.+.|++..-++.-++.+|..-.+ ..|..++.+.++.++...+ +.++.+.+...+...++.+
T Consensus 282 eiagc~~~liT~~~~~~e~~f~pgk~~iv------------~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~ 349 (373)
T COG4641 282 EIAGCGGFLITDYWKDLEKFFKPGKDIIV------------YQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYE 349 (373)
T ss_pred HHhhcCCccccccHHHHHHhcCCchheEE------------ecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHH
Confidence 99999999999998888889999877664 4899999999999999843 2455555666667779999
Q ss_pred HHHHHHHHHHHHHH
Q 007300 572 GPAKKWEETLLNLE 585 (609)
Q Consensus 572 ~~a~~~~~~~~~l~ 585 (609)
.-+.++.+....+.
T Consensus 350 ~r~~~~~~~i~sI~ 363 (373)
T COG4641 350 ERIFKLLNEIASIN 363 (373)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888887777644
No 139
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.069 Score=52.49 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=60.5
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEeccccccCH--HHHHHHHhhccc----CCeEEEEEeCCC--hhhHHHHHHHHHhCCCc
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGRLEEQKGS--DILAAAIPHFIK----ENVQIIVLGTGK--KPMEKQLEQLEILYPEK 456 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~--~~ll~a~~~l~~----~~~~lvivG~g~--~~~~~~l~~l~~~~~~~ 456 (609)
+++++....++ ...+-+++|.-.+.-.. |.+.+.+..+.+ ....|++--.-. +.....++.-....+
T Consensus 150 ~e~~~~~~p~~---rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~-- 224 (329)
T COG3660 150 REAFKHLLPLP---RQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSP-- 224 (329)
T ss_pred HHHHHhhCCCC---CceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCc--
Confidence 45555444433 44688999986654433 333333333322 467777765432 223333322111111
Q ss_pred eEEEeec--ChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC
Q 007300 457 ARGVAKF--NIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 457 v~~~~~~--~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~ 506 (609)
..+...- ..+-...+++.||.++.+... =.-.-||.+.|+||-+---
T Consensus 225 ~i~w~~~d~g~NPY~~~La~Adyii~TaDS---inM~sEAasTgkPv~~~~~ 273 (329)
T COG3660 225 GIVWNNEDTGYNPYIDMLAAADYIISTADS---INMCSEAASTGKPVFILEP 273 (329)
T ss_pred eeEeCCCCCCCCchHHHHhhcceEEEecch---hhhhHHHhccCCCeEEEec
Confidence 1111111 111233599999999988653 2236799999999976543
No 140
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.18 E-value=0.008 Score=64.53 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=86.0
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEE-EeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvi-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
.+++..|++...+. +.+-+++..+.+.++++++ +|.+.+ ...+. ..+.++......+.. .+++.||++|
T Consensus 227 ~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~g~~~~--~~~~~----~~~~~v~~~~~~p~~---~ll~~~~~~I 296 (392)
T TIGR01426 227 VVLISLGTVFNNQP-SFYRTCVEAFRDLDWHVVLSVGRGVD--PADLG----ELPPNVEVRQWVPQL---EILKKADAFI 296 (392)
T ss_pred EEEEecCccCCCCH-HHHHHHHHHHhcCCCeEEEEECCCCC--hhHhc----cCCCCeEEeCCCCHH---HHHhhCCEEE
Confidence 46677788643221 2222233333334566554 555431 11222 234556554333432 5899999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCCCC----cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCH-H
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGT-Q 554 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~-~ 554 (609)
..+- ..+++||+++|+|.|+....+ ..+.+.+...|..+. -+.-+.++++++|++++.+... +
T Consensus 297 ~hgG----~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~--------~~~~~~~~l~~ai~~~l~~~~~~~ 364 (392)
T TIGR01426 297 THGG----MNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLP--------PEEVTAEKLREAVLAVLSDPRYAE 364 (392)
T ss_pred ECCC----chHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEec--------cccCCHHHHHHHHHHHhcCHHHHH
Confidence 6542 247899999999999976544 233344545666540 0233578999999999987321 2
Q ss_pred HHHHHHHHHHHhhCCchHHHHHHHHH
Q 007300 555 ALAEMMKNGMAQDLSWKGPAKKWEET 580 (609)
Q Consensus 555 ~~~~~~~~~~~~~fs~~~~a~~~~~~ 580 (609)
..+++.+. +.+.-.-+..++.++++
T Consensus 365 ~~~~l~~~-~~~~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 365 RLRKMRAE-IREAGGARRAADEIEGF 389 (392)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHh
Confidence 22223222 23334455555555443
No 141
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.09 E-value=0.17 Score=52.23 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=107.8
Q ss_pred cEEEEEecc-ccccCHHHHHHHHhhcccCCeEEEE-EeCC--ChhhHHHHHHHHHhC-C-CceEEEeec-ChHHHHHHHH
Q 007300 401 PVIGFIGRL-EEQKGSDILAAAIPHFIKENVQIIV-LGTG--KKPMEKQLEQLEILY-P-EKARGVAKF-NIPLAHMIIA 473 (609)
Q Consensus 401 ~~i~~iGrl-~~~Kg~~~ll~a~~~l~~~~~~lvi-vG~g--~~~~~~~l~~l~~~~-~-~~v~~~~~~-~~~~~~~~l~ 473 (609)
+.-+.+|+- ++..+...+++++++....++++++ +|-| .+.|.+++.+.+.++ + +++.....+ +-++...+++
T Consensus 185 ~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~ 264 (360)
T PF07429_consen 185 KLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLS 264 (360)
T ss_pred ceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHH
Confidence 455566665 4777888899988886667888776 4554 467888888888874 4 356555444 6666778999
Q ss_pred hCcEEEecCCC-CCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhC
Q 007300 474 GADFILIPSRF-EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYG 552 (609)
Q Consensus 474 ~aDv~v~pS~~-E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~ 552 (609)
.||+.++.... .+.|+.++ .+.+|+||+-+........+.+..--+++ .-|.-|...+.++=+++... +
T Consensus 265 ~cDl~if~~~RQQgiGnI~l-Ll~~G~~v~L~~~np~~~~l~~~~ipVlf--------~~d~L~~~~v~ea~rql~~~-d 334 (360)
T PF07429_consen 265 RCDLGIFNHNRQQGIGNICL-LLQLGKKVFLSRDNPFWQDLKEQGIPVLF--------YGDELDEALVREAQRQLANV-D 334 (360)
T ss_pred hCCEEEEeechhhhHhHHHH-HHHcCCeEEEecCChHHHHHHhCCCeEEe--------ccccCCHHHHHHHHHHHhhC-c
Confidence 99999999865 89999877 89999999999876666555554333444 11333444444433333321 0
Q ss_pred HHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 007300 553 TQALAEMMKNGMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 553 ~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~l 584 (609)
. + .-.|.-....+.|.+.+..+
T Consensus 335 k--------~--~iaFf~pny~~~w~~~l~~~ 356 (360)
T PF07429_consen 335 K--------Q--QIAFFAPNYLQGWRQALRLA 356 (360)
T ss_pred c--------c--ceeeeCCchHHHHHHHHHHH
Confidence 1 1 12266667777777776543
No 142
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.06 E-value=0.15 Score=53.59 Aligned_cols=90 Identities=19% Similarity=0.112 Sum_probs=58.0
Q ss_pred EEEEEeccc-c-ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 402 VIGFIGRLE-E-QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 402 ~i~~iGrl~-~-~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
+.++-|+=. + .+-+..+++++.++.+...++++.|... . +.+++...+.. .+.+. + ....+++.||+.+
T Consensus 170 I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~--~-~~i~~~~~~~~-~~~~~---~--~~~~~m~~aDlal 240 (347)
T PRK14089 170 IAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK--G-KDLKEIYGDIS-EFEIS---Y--DTHKALLEAEFAF 240 (347)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc--H-HHHHHHHhcCC-CcEEe---c--cHHHHHHhhhHHH
Confidence 445555432 2 3456667799988876557788887654 2 44444333322 12222 1 3356899999988
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
.. .|.+.+|++.+|+|.|+.-
T Consensus 241 ~~-----SGT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 241 IC-----SGTATLEAALIGTPFVLAY 261 (347)
T ss_pred hc-----CcHHHHHHHHhCCCEEEEE
Confidence 65 5888889999999998864
No 143
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=97.01 E-value=0.0022 Score=59.93 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCc
Q 007300 310 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEW 360 (609)
Q Consensus 310 ~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~ 360 (609)
..+..||..+++|.+.++.+-.. + ..+|.||+-|||++.+
T Consensus 131 ~~l~~~D~~isPT~wQ~~~fP~~----------~-r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 131 LALEQADAGISPTRWQRSQFPAE----------F-RSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHhCCcCcCCCHHHHHhCCHH----------H-HcCcEEeecccchhhc
Confidence 35668999999999998876541 1 1399999999998754
No 144
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.95 E-value=0.8 Score=49.63 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=112.0
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCC-CCccccccccCcchhcccchHH
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNP-LTDKYIGVKYDASTVMDAKPLL 384 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p-~~~~~~~~~~~~~~~~~~~~~~ 384 (609)
.+.+..++.+|.|.+=-+.-.+.+.+ .|++.. ++.+.+ |+.+.-+ ...+. ..
T Consensus 168 ~l~r~vl~~~~~ItvRD~~S~~~Lk~---lGv~~~------~v~~~a---DpAF~L~~~~~~~---------------~~ 220 (426)
T PRK10017 168 QLANYVFGHCDALILRESVSLDLMKR---SNITTA------KVEHGV---DTAWLVDHHTEDF---------------TA 220 (426)
T ss_pred HHHHHHHhcCCEEEEccHHHHHHHHH---hCCCcc------ceEEec---ChhhhCCcccccc---------------cc
Confidence 45677889999987777777777765 666533 444433 4433211 11000 00
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEec-ccc---------ccCHHHHHHHHhhcccCCeEEEEEeCC------ChhhHHHHHH
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGR-LEE---------QKGSDILAAAIPHFIKENVQIIVLGTG------KKPMEKQLEQ 448 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGr-l~~---------~Kg~~~ll~a~~~l~~~~~~lvivG~g------~~~~~~~l~~ 448 (609)
...+....+.+. ..++|++.-| +.+ +.-...+.+++..+.+.+.+++++-.- .+......++
T Consensus 221 ~~~~~~~~~~~~--~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~ 298 (426)
T PRK10017 221 SYAVQHWLDVAA--QQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALN 298 (426)
T ss_pred chhhhhhhcccc--cCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHH
Confidence 001111112211 2356655544 321 111245667777776667666655431 1112222344
Q ss_pred HHHhCCC--ceEE-EeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC-ccccccc-CcceeEec
Q 007300 449 LEILYPE--KARG-VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG-LVDTVEE-GFTGFQMG 523 (609)
Q Consensus 449 l~~~~~~--~v~~-~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg-~~e~i~~-~~~G~l~~ 523 (609)
+....+. ++.. ...++..++..+++.||+++-.-. -..+=|++.|+|+|+-.... ...++.+ |...+..
T Consensus 299 l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~- 372 (426)
T PRK10017 299 LRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRL-----HSAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAI- 372 (426)
T ss_pred HHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecc-----hHHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEe-
Confidence 4444332 2222 233566666689999999875432 13555899999999987532 2222221 1111221
Q ss_pred ccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 007300 524 SFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGM 564 (609)
Q Consensus 524 ~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~~~ 564 (609)
.++.-+.+++.+.+.+++++ .+.+++..++++
T Consensus 373 -------~~~~l~~~~Li~~v~~~~~~--r~~~~~~l~~~v 404 (426)
T PRK10017 373 -------DIRHLLDGSLQAMVADTLGQ--LPALNARLAEAV 404 (426)
T ss_pred -------chhhCCHHHHHHHHHHHHhC--HHHHHHHHHHHH
Confidence 22555678999999999998 555554444443
No 145
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=96.86 E-value=0.04 Score=58.62 Aligned_cols=193 Identities=15% Similarity=0.158 Sum_probs=96.7
Q ss_pred HHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCCccccccccCcchhcccchHHHH
Q 007300 307 WMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKE 386 (609)
Q Consensus 307 ~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 386 (609)
.........|.+++.|+...+.+.+. ++.+.+ .++..|. |..|. +.......++
T Consensus 127 ~~~~~~~~~d~~~~~s~~~~~~~~~~--f~~~~~--------~i~~~G~------PR~D~----------l~~~~~~~~~ 180 (369)
T PF04464_consen 127 NYKRNYRNYDYFIVSSEFEKEIFKKA--FGYPED--------KILVTGY------PRNDY----------LFNKSKENRN 180 (369)
T ss_dssp HHHHHHTT-SEEEESSHHHHHHHHHH--TT--GG--------GEEES--------GGGHH----------HHHSTT-HHH
T ss_pred hhhhhccCCcEEEECCHHHHHHHHHH--hccCcc--------eEEEeCC------CeEhH----------HhccCHHHHH
Confidence 44556778999999999999988863 555543 3455564 22111 0111122256
Q ss_pred HHHHHhCCCCCCCCcEEEEEeccccccCH------H--HHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceE
Q 007300 387 ALQAEVGLPVDRNIPVIGFIGRLEEQKGS------D--ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKAR 458 (609)
Q Consensus 387 ~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~------~--~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~ 458 (609)
.+++.++++. ++.+|+|+=.+...... . .-++.+..+.+.++.+++-.-. ......... .....++.
T Consensus 181 ~i~~~~~~~~--~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~~~~~~~~~li~k~Hp--~~~~~~~~~-~~~~~~i~ 255 (369)
T PF04464_consen 181 RIKKKLGIDK--DKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLNFLLKNNYVLIIKPHP--NMKKKFKDF-KEDNSNII 255 (369)
T ss_dssp HHHHHTT--S--S-EEEEEE----GGG--GGSS----TT-HHHHHHHHTTTEEEEE--SH--HHHTT-----TT-TTTEE
T ss_pred HHHHHhccCC--CCcEEEEeeccccccccccccccccccCHHHHHHHhCCCcEEEEEeCc--hhhhchhhh-hccCCcEE
Confidence 7788888764 44799998665433222 1 1223333444468877776532 233333222 22233454
Q ss_pred EEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEc--CC-------CCcccccccCcceeEeccccccc
Q 007300 459 GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVA--ST-------GGLVDTVEEGFTGFQMGSFSVDC 529 (609)
Q Consensus 459 ~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s--~~-------gg~~e~i~~~~~G~l~~~~~~~~ 529 (609)
... +...+..++..||++|-= ++-+++|++.+++|||-- +. |...+ ..+..-|-.
T Consensus 256 ~~~--~~~~~~~ll~~aDiLITD-----ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~-~~~~~pg~~-------- 319 (369)
T PF04464_consen 256 FVS--DNEDIYDLLAAADILITD-----YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFD-YEEDLPGPI-------- 319 (369)
T ss_dssp E-T--T-S-HHHHHHT-SEEEES-----S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS--TTTSSSS-E--------
T ss_pred ECC--CCCCHHHHHHhcCEEEEe-----chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCc-hHhhCCCce--------
Confidence 332 223566799999999843 566899999999999954 32 11112 112222332
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q 007300 530 EAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 530 ~~v~~~d~~~la~~I~~ll~~ 550 (609)
..+.++|.++|+.++++
T Consensus 320 ----~~~~~eL~~~i~~~~~~ 336 (369)
T PF04464_consen 320 ----VYNFEELIEAIENIIEN 336 (369)
T ss_dssp ----ESSHHHHHHHHTTHHHH
T ss_pred ----eCCHHHHHHHHHhhhhC
Confidence 36889999999998876
No 146
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.19 Score=57.60 Aligned_cols=264 Identities=19% Similarity=0.226 Sum_probs=164.0
Q ss_pred CceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCchh
Q 007300 226 YDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKI 305 (609)
Q Consensus 226 pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (609)
-|+| ..||++..++|-+++... ..+++.+..|...+ ... .+ ..+ ...
T Consensus 141 ~d~v-wihdyhlmllp~~lr~~~------~~~~ig~flhspfp-----ssE--------i~-r~l------------p~r 187 (732)
T KOG1050|consen 141 GDIV-WIHDYHLMLLPQMLRERF------NSAKIGFFLHSPFP-----SSE--------IY-RCL------------PVR 187 (732)
T ss_pred CCcE-EEEcchhhccchhhhccc------ccceEEEeccCCCC-----hHH--------HH-Hhc------------ccH
Confidence 5888 999999999998888754 57788788885332 110 00 000 011
Q ss_pred HHHHHHhhcCCEEEeeCHHHHHHHhcccC--CCccch-----h----hhccCCeeEecCCCCCCCcCCCCccccccccCc
Q 007300 306 NWMKAGILESDMVLTVSPHYAQELVSGED--KGVELD-----N----IIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDA 374 (609)
Q Consensus 306 ~~~k~~~~~ad~vi~vS~~~~~~l~~~~~--~g~~~~-----~----~~~~~~i~vI~nGvd~~~~~p~~~~~~~~~~~~ 374 (609)
.-+-.++..+|.+-+.+..++..+.+..- .+.+.. . .-+...+..+|-|+|...+......
T Consensus 188 ~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~-------- 259 (732)
T KOG1050|consen 188 KEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLEL-------- 259 (732)
T ss_pred HHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccc--------
Confidence 22233566777777777777766554211 111111 0 0122356677888888776433210
Q ss_pred chhcccchHHHHHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc------CCeEEEEEeCCC----h---h
Q 007300 375 STVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK------ENVQIIVLGTGK----K---P 441 (609)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~------~~~~lvivG~g~----~---~ 441 (609)
.....-..+++..+ .++.+|+-+-|+...||...=+.++.++.. ..+.++.+..+. + +
T Consensus 260 ----~~~~~~~~ei~~~~-----~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~ 330 (732)
T KOG1050|consen 260 ----PYVGSKGMEIKEPF-----KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEE 330 (732)
T ss_pred ----hhHHHHHHHHhhhc-----cCCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHH
Confidence 00011122333333 256789999999999999887888887765 245555444332 1 2
Q ss_pred hHHHHHHHHHh----CCC----ceE-EEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcC----CceEEcCCCC
Q 007300 442 MEKQLEQLEIL----YPE----KAR-GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYG----TVPIVASTGG 508 (609)
Q Consensus 442 ~~~~l~~l~~~----~~~----~v~-~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G----~PvI~s~~gg 508 (609)
++..+..+..+ ++. .+. ..-.++..++-+++..+|+.++.+..+|..++.+|+..|. .+.|.+..-|
T Consensus 331 ~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G 410 (732)
T KOG1050|consen 331 LKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIG 410 (732)
T ss_pred HHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeecc
Confidence 33333333332 221 122 2223466777789999999999999999999999998873 6778888888
Q ss_pred cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhh
Q 007300 509 LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 551 (609)
Q Consensus 509 ~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 551 (609)
..+..+++.-. +.|-|.++++..|..++..+
T Consensus 411 ~~~tl~d~aiv------------vnpw~~~~~~~~i~~al~~s 441 (732)
T KOG1050|consen 411 DDTTLEDAAIV------------VNPWDGDEFAILISKALTMS 441 (732)
T ss_pred ccccccccCEE------------ECCcchHHHHHHHHHHhhcC
Confidence 88887665432 38999999999999999974
No 147
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.81 E-value=0.44 Score=49.39 Aligned_cols=104 Identities=16% Similarity=0.060 Sum_probs=67.8
Q ss_pred cEEEEEecccccc--CHH---HHHHHHhhccc-CCeEEEEEeCC--ChhhHHHHHHHHHhCCCceEEEeecChHHHHHHH
Q 007300 401 PVIGFIGRLEEQK--GSD---ILAAAIPHFIK-ENVQIIVLGTG--KKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 472 (609)
Q Consensus 401 ~~i~~iGrl~~~K--g~~---~ll~a~~~l~~-~~~~lvivG~g--~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l 472 (609)
.+.+.+|.-.... +.+ .+++.+..+.+ .+..+.|...- +++.++.+.++....+ .+.++..-..+-...+|
T Consensus 148 ~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~-~~~~~~~~~~nPy~~~L 226 (311)
T PF06258_consen 148 RVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNP-GVYIWDGTGENPYLGFL 226 (311)
T ss_pred eEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCC-ceEEecCCCCCcHHHHH
Confidence 4667888644322 334 56666666655 46788888774 3567777777765444 24333222222244699
Q ss_pred HhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC
Q 007300 473 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 508 (609)
Q Consensus 473 ~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg 508 (609)
+.||.++++.. .-.-+.||.+.|+||.+-...+
T Consensus 227 a~ad~i~VT~D---SvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 227 AAADAIVVTED---SVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HhCCEEEEcCc---cHHHHHHHHHcCCCEEEecCCC
Confidence 99999999865 3334899999999998888766
No 148
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=95.38 E-value=4.1 Score=42.28 Aligned_cols=136 Identities=14% Similarity=0.202 Sum_probs=74.2
Q ss_pred CcEEEEEeccccccCHHHH---HHHHhhccc-CCeEEEEEeCCC-hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHh
Q 007300 400 IPVIGFIGRLEEQKGSDIL---AAAIPHFIK-ENVQIIVLGTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG 474 (609)
Q Consensus 400 ~~~i~~iGrl~~~Kg~~~l---l~a~~~l~~-~~~~lvivG~g~-~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~ 474 (609)
..+++.+|.- .-|-+.+ ++|...+.. ...-++|.|.-- ..-.+++...+.+.+ ++.. ..|..+ +..++++
T Consensus 220 ~~Ilvs~GGG--~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p-~i~I-~~f~~~-~~~ll~g 294 (400)
T COG4671 220 FDILVSVGGG--ADGAELIETALAAAQLLAGLNHKWLIVTGPFMPEAQRQKLLASAPKRP-HISI-FEFRND-FESLLAG 294 (400)
T ss_pred ceEEEecCCC--hhhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHHHHHHHHHhcccCC-CeEE-EEhhhh-HHHHHHh
Confidence 3577777753 4454444 444444322 122355666643 334445555554444 3443 345444 3459999
Q ss_pred CcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccc--cccc---CcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 475 ADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD--TVEE---GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 475 aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e--~i~~---~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
|+..|.-+-+ ++..|-++.|+|.+.-....-.+ ++.- .+-|+. |.-.-+.-.++.|+++|..+++
T Consensus 295 A~~vVSm~GY----NTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~------dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 295 ARLVVSMGGY----NTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLV------DVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred hheeeecccc----hhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcc------eeeCcccCChHHHHHHHHhccc
Confidence 9999865432 56889999999987665432222 2221 112321 0001133457889999998887
Q ss_pred h
Q 007300 550 T 550 (609)
Q Consensus 550 ~ 550 (609)
.
T Consensus 365 ~ 365 (400)
T COG4671 365 R 365 (400)
T ss_pred C
Confidence 4
No 149
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.34 E-value=1.4 Score=44.15 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=58.3
Q ss_pred EEEEEeccccccCHHHHHHHHhhcccCCeEEE-EEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEe
Q 007300 402 VIGFIGRLEEQKGSDILAAAIPHFIKENVQII-VLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 402 ~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lv-ivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
+++..|.- ..|| +..+.+..|.+.++.+. ++|.+.+.+.+..+... +++. +..+ .+.+.+..++..||+.+.
T Consensus 161 ilI~lGGs-Dpk~--lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~-~~~~-i~~~--~~~~dma~LMke~d~aI~ 233 (318)
T COG3980 161 ILITLGGS-DPKN--LTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAE-KYPN-INLY--IDTNDMAELMKEADLAIS 233 (318)
T ss_pred EEEEccCC-Chhh--hHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHh-hCCC-eeeE--ecchhHHHHHHhcchhee
Confidence 66677764 4454 56677777766555554 45666655555555444 4442 4332 356667789999999986
Q ss_pred cCCCCCCcHHHHHHHHcCCce
Q 007300 481 PSRFEPCGLIQLHAMRYGTVP 501 (609)
Q Consensus 481 pS~~E~~gl~~lEAma~G~Pv 501 (609)
. -|.++.||...|+|.
T Consensus 234 A-----aGstlyEa~~lgvP~ 249 (318)
T COG3980 234 A-----AGSTLYEALLLGVPS 249 (318)
T ss_pred c-----cchHHHHHHHhcCCc
Confidence 4 688999999999994
No 150
>PLN02562 UDP-glycosyltransferase
Probab=94.25 E-value=0.93 Score=49.57 Aligned_cols=128 Identities=11% Similarity=0.070 Sum_probs=76.3
Q ss_pred cEEEEEeccc---cccCHHHHHHHHhhcccCCeEEEE-EeCCCh-hhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhC
Q 007300 401 PVIGFIGRLE---EQKGSDILAAAIPHFIKENVQIIV-LGTGKK-PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGA 475 (609)
Q Consensus 401 ~~i~~iGrl~---~~Kg~~~ll~a~~~l~~~~~~lvi-vG~g~~-~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 475 (609)
.+++..|.+. ..+-+..++.++.++ +.+|++ +..+.. .+.+ ....+.++++....+.+.. .+|+..
T Consensus 275 vvyvsfGS~~~~~~~~~~~~l~~~l~~~---g~~fiW~~~~~~~~~l~~---~~~~~~~~~~~v~~w~PQ~---~iL~h~ 345 (448)
T PLN02562 275 VIYISFGSWVSPIGESNVRTLALALEAS---GRPFIWVLNPVWREGLPP---GYVERVSKQGKVVSWAPQL---EVLKHQ 345 (448)
T ss_pred eEEEEecccccCCCHHHHHHHHHHHHHC---CCCEEEEEcCCchhhCCH---HHHHHhccCEEEEecCCHH---HHhCCC
Confidence 5777888854 344556666666665 335554 332211 1111 1112223345443333433 378888
Q ss_pred cEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----ccccccc-CcceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 476 DFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 476 Dv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~~-~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
++.++-++ || .+.+||+.+|+|+|+-...+ ....+.+ -..|+-+ ..-+.++++++|++++.
T Consensus 346 ~v~~fvtH---~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~----------~~~~~~~l~~~v~~~l~ 412 (448)
T PLN02562 346 AVGCYLTH---CGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRI----------SGFGQKEVEEGLRKVME 412 (448)
T ss_pred ccceEEec---CcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEe----------CCCCHHHHHHHHHHHhC
Confidence 88666665 55 47999999999999876433 4444544 2556643 34578999999999997
Q ss_pred h
Q 007300 550 T 550 (609)
Q Consensus 550 ~ 550 (609)
+
T Consensus 413 ~ 413 (448)
T PLN02562 413 D 413 (448)
T ss_pred C
Confidence 5
No 151
>PLN02448 UDP-glycosyltransferase family protein
Probab=93.96 E-value=1.1 Score=49.09 Aligned_cols=132 Identities=14% Similarity=0.143 Sum_probs=73.9
Q ss_pred cEEEEEecccc--ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEE
Q 007300 401 PVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 401 ~~i~~iGrl~~--~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
.+.+..|.... .+-+..+++++.. .+..|+++..+.. ..+.+. .+++.....+.+.. .+|+..++.
T Consensus 276 vvyvsfGs~~~~~~~~~~~~~~~l~~---~~~~~lw~~~~~~---~~~~~~---~~~~~~v~~w~pQ~---~iL~h~~v~ 343 (459)
T PLN02448 276 VLYVSLGSFLSVSSAQMDEIAAGLRD---SGVRFLWVARGEA---SRLKEI---CGDMGLVVPWCDQL---KVLCHSSVG 343 (459)
T ss_pred eEEEeecccccCCHHHHHHHHHHHHh---CCCCEEEEEcCch---hhHhHh---ccCCEEEeccCCHH---HHhccCccc
Confidence 56677777642 2224444444444 4677887655431 112221 12234333322333 378888886
Q ss_pred EecCCCCCCc-HHHHHHHHcCCceEEcCCCC----cccccccC-cceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 479 LIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 479 v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~~~-~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
++-++ +| .+++||+.+|+|+|+-...+ ....+.+. +.|+-+.. ..+ --..-+.+++++++++++.+
T Consensus 344 ~fvtH---gG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~-~~~--~~~~~~~~~l~~av~~vl~~ 415 (459)
T PLN02448 344 GFWTH---CGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKR-EVG--EETLVGREEIAELVKRFMDL 415 (459)
T ss_pred eEEec---CchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEec-ccc--cCCcCcHHHHHHHHHHHhcC
Confidence 55555 44 48999999999999987543 33444442 35554300 000 00124679999999999975
No 152
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=93.83 E-value=7.1 Score=39.12 Aligned_cols=154 Identities=13% Similarity=0.076 Sum_probs=78.5
Q ss_pred HHHHHHhCCCCCCCCcEE---EEEeccccccCHHHHHHHHhhccc-CCeEEEEEeCCC-hhhHHHHHH------------
Q 007300 386 EALQAEVGLPVDRNIPVI---GFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK-KPMEKQLEQ------------ 448 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i---~~iGrl~~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~-~~~~~~l~~------------ 448 (609)
+..|..+-.. ...+.. +|+||..-.||+..+++.-++..+ ++..-++-|=.. ......++.
T Consensus 168 ~~~Rstywkd--~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~~~~y~~~~~~ 245 (355)
T PF11440_consen 168 NKYRSTYWKD--VSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGIPYEYYPKLDC 245 (355)
T ss_dssp HHHHHHH-----GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT--EEEE-CTGG
T ss_pred HHHHHHHhhh--hHhhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCcccccCccccc
Confidence 3445555432 233455 899999999999999999998766 688888888432 111111111
Q ss_pred --HHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCC------CCCcHHHHHHHHcCCceEEc-CCCCcccccccC---
Q 007300 449 --LEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF------EPCGLIQLHAMRYGTVPIVA-STGGLVDTVEEG--- 516 (609)
Q Consensus 449 --l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~------E~~gl~~lEAma~G~PvI~s-~~gg~~e~i~~~--- 516 (609)
....-+.-+-.++.|-.++.-..++.+-+...-+.. +..-.+.+|..|||+.+|-- ++|..-.+--|+
T Consensus 246 ~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~ 325 (355)
T PF11440_consen 246 DEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRY 325 (355)
T ss_dssp GG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBG
T ss_pred cCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCcee
Confidence 111111234455666666666688888777665542 44778999999999876654 344333311121
Q ss_pred ---cceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 517 ---FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 517 ---~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
..|.+ ++|..|.++-.+.|.++..+
T Consensus 326 ~~~~~~~I---------~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 326 IDHPYSAI---------YFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp GSS--S-E---------EE-TTSHHHHHHHHHHHHT-
T ss_pred eccCccee---------EeccchHHHHHHHHHHHhcc
Confidence 23333 34788887777777766543
No 153
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=93.38 E-value=0.12 Score=52.29 Aligned_cols=44 Identities=16% Similarity=0.330 Sum_probs=38.1
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~ 129 (609)
|+|++|....+|+ ..||++..+.+|.+.|-+.-..|..|+++..
T Consensus 1 ~~V~ll~EGtYPy-v~GGVSsW~~~LI~glpe~~F~v~~i~a~~~ 44 (268)
T PF11997_consen 1 MDVCLLTEGTYPY-VRGGVSSWVHQLIRGLPEHEFHVYAIGANPE 44 (268)
T ss_pred CeEEEEecCcCCC-CCCchhHHHHHHHhcCCCceEEEEEEeCCcc
Confidence 8999999999995 7799999999999999888777877787743
No 154
>PLN02670 transferase, transferring glycosyl groups
Probab=93.21 E-value=2.1 Score=47.11 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=64.7
Q ss_pred HHHhCcEEEecCCCCCCcH-HHHHHHHcCCceEEcCCC----CcccccccCcceeEecccccccccCCCCCHHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCGL-IQLHAMRYGTVPIVASTG----GLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 545 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl-~~lEAma~G~PvI~s~~g----g~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~ 545 (609)
+|+...+.++-++ ||. +++||+.+|+|+|+-... .....+.+.+.|+.+.....+ ..-+.+++.++|+
T Consensus 352 IL~H~~v~~FvtH---cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~----~~~~~e~i~~av~ 424 (472)
T PLN02670 352 ILSHESVGGFLTH---CGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERD----GSFTSDSVAESVR 424 (472)
T ss_pred HhcCcccceeeec---CCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccC----CcCcHHHHHHHHH
Confidence 7888888766665 554 899999999999997643 344455556677754100000 1136899999999
Q ss_pred HHHHhhCHHHHHHHHHH---HHHhhCCchHHHHHHHHHHHHH
Q 007300 546 RALATYGTQALAEMMKN---GMAQDLSWKGPAKKWEETLLNL 584 (609)
Q Consensus 546 ~ll~~~~~~~~~~~~~~---~~~~~fs~~~~a~~~~~~~~~l 584 (609)
+++.+.+-+.+++.+++ .+...=+-+..++.+++.+.+.
T Consensus 425 ~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 425 LAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLREN 466 (472)
T ss_pred HHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHh
Confidence 99976322233333322 1234444455555555555444
No 155
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.13 E-value=0.24 Score=41.81 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=58.4
Q ss_pred EEEEeCCChhhHHHHHHHHHhCCCceEEE---eecChHH--HHHHHHhCcEEEecCCCC---CCcHHHHHHHHcCCceEE
Q 007300 432 IIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPL--AHMIIAGADFILIPSRFE---PCGLIQLHAMRYGTVPIV 503 (609)
Q Consensus 432 lvivG~g~~~~~~~l~~l~~~~~~~v~~~---~~~~~~~--~~~~l~~aDv~v~pS~~E---~~gl~~lEAma~G~PvI~ 503 (609)
++|+|.- +.+...++++..+++.++..+ ..+.... ++..+..||++|++..+= .+-.+--+|-..|+|++-
T Consensus 2 vliVGG~-~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 2 VLIVGGR-EDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred EEEEcCC-cccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 5677752 226778888888888777777 4454444 777899999999988763 345567778899999999
Q ss_pred cCCCCcccc
Q 007300 504 ASTGGLVDT 512 (609)
Q Consensus 504 s~~gg~~e~ 512 (609)
+...|+..+
T Consensus 81 ~~~~~~~~l 89 (97)
T PF10087_consen 81 SRSRGVSSL 89 (97)
T ss_pred ECCCCHHHH
Confidence 986665543
No 156
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=92.13 E-value=0.58 Score=43.18 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.7
Q ss_pred HhhcCCEEEeeCHHHHHHHhc
Q 007300 311 GILESDMVLTVSPHYAQELVS 331 (609)
Q Consensus 311 ~~~~ad~vi~vS~~~~~~l~~ 331 (609)
....||.|++.|.+.++.+..
T Consensus 116 saLaAD~v~FNS~~nr~sFL~ 136 (168)
T PF12038_consen 116 SALAADRVVFNSAFNRDSFLD 136 (168)
T ss_pred HHHhceeeeecchhhHHHHHH
Confidence 355799999999999998775
No 157
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=91.65 E-value=2 Score=44.94 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=69.2
Q ss_pred HHHHHHHhCCCCCCCCcEEEEEec-cccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceE-EE
Q 007300 385 KEALQAEVGLPVDRNIPVIGFIGR-LEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKAR-GV 460 (609)
Q Consensus 385 ~~~~~~~~gl~~~~~~~~i~~iGr-l~~~Kg--~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~-~~ 460 (609)
.+.+...+++..+ +..+++..|. ..+.|. .+...+.++.+.+.+.+++++|+..+ .+..+++....+..+. ..
T Consensus 161 ~~~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e--~~~~~~i~~~~~~~~~~l~ 237 (334)
T TIGR02195 161 QAAALAKFGLDTE-RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKD--HPAGNEIEALLPGELRNLA 237 (334)
T ss_pred HHHHHHHcCCCCC-CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhh--HHHHHHHHHhCCcccccCC
Confidence 3445566666422 2244556655 345664 45777777777666789999987652 3334455444443333 22
Q ss_pred eecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 461 AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 461 ~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
+..+-.++..+++.||++|-.-. |..=+ |.+.|+|+|+=-
T Consensus 238 g~~sL~el~ali~~a~l~I~~DS----Gp~Hl-AaA~~~P~i~lf 277 (334)
T TIGR02195 238 GETSLDEAVDLIALAKAVVTNDS----GLMHV-AAALNRPLVALY 277 (334)
T ss_pred CCCCHHHHHHHHHhCCEEEeeCC----HHHHH-HHHcCCCEEEEE
Confidence 34466677789999999997642 33222 678999998754
No 158
>PLN02210 UDP-glucosyl transferase
Probab=91.28 E-value=4 Score=44.79 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=75.4
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEE-EeCCC-hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEE
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIV-LGTGK-KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvi-vG~g~-~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
.+.+..|.+... ..+.+-+.+..|...+.+|++ ++... ......+++... +++.. ...|-.+. .+|+.+++.
T Consensus 271 vvyvsfGS~~~~-~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~--~~~g~-v~~w~PQ~--~iL~h~~vg 344 (456)
T PLN02210 271 VVYISFGSMLES-LENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVK--EGQGV-VLEWSPQE--KILSHMAIS 344 (456)
T ss_pred eEEEEecccccC-CHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhcc--CCCeE-EEecCCHH--HHhcCcCcC
Confidence 567777876532 334444444444444556665 34321 111122222211 12222 23443332 378999866
Q ss_pred EecCCCCCCcH-HHHHHHHcCCceEEcCCCC----ccccccc-CcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 479 LIPSRFEPCGL-IQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 479 v~pS~~E~~gl-~~lEAma~G~PvI~s~~gg----~~e~i~~-~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
++-++ ||. +++||+.+|+|+|+-...+ ....+.+ -+.|..+..-..+ ..-+.++++++|++++.+
T Consensus 345 ~FitH---~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~----~~~~~~~l~~av~~~m~~ 415 (456)
T PLN02210 345 CFVTH---CGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVD----GELKVEEVERCIEAVTEG 415 (456)
T ss_pred eEEee---CCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccC----CcCCHHHHHHHHHHHhcC
Confidence 66555 554 7999999999999976543 3344444 4677754100000 124778999999999975
No 159
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=91.23 E-value=1.1 Score=41.99 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.0
Q ss_pred hhcCCEEEeeCHHHHHHHhcccCCCccch
Q 007300 312 ILESDMVLTVSPHYAQELVSGEDKGVELD 340 (609)
Q Consensus 312 ~~~ad~vi~vS~~~~~~l~~~~~~g~~~~ 340 (609)
-..+|..++.|+..++++.+ .|++.+
T Consensus 135 ~~~~D~y~Vase~~~~~l~~---~Gi~~~ 160 (169)
T PF06925_consen 135 HPGVDRYFVASEEVKEELIE---RGIPPE 160 (169)
T ss_pred cCCCCEEEECCHHHHHHHHH---cCCChh
Confidence 35799999999999999997 898877
No 160
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=91.19 E-value=0.84 Score=50.64 Aligned_cols=154 Identities=19% Similarity=0.142 Sum_probs=74.8
Q ss_pred CcEEEEEecccc---ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCc
Q 007300 400 IPVIGFIGRLEE---QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 400 ~~~i~~iGrl~~---~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 476 (609)
..+++..|.+.. .+-.+.++++++++ +. ++++.-++.. ...+ +.++...-+.+.. ++|+...
T Consensus 277 ~vv~vsfGs~~~~~~~~~~~~~~~~~~~~--~~-~~iW~~~~~~-----~~~l----~~n~~~~~W~PQ~---~lL~hp~ 341 (500)
T PF00201_consen 277 GVVYVSFGSIVSSMPEEKLKEIAEAFENL--PQ-RFIWKYEGEP-----PENL----PKNVLIVKWLPQN---DLLAHPR 341 (500)
T ss_dssp EEEEEE-TSSSTT-HHHHHHHHHHHHHCS--TT-EEEEEETCSH-----GCHH----HTTEEEESS--HH---HHHTSTT
T ss_pred CEEEEecCcccchhHHHHHHHHHHHHhhC--CC-cccccccccc-----cccc----cceEEEeccccch---hhhhccc
Confidence 356677788642 22245567777766 33 7877665531 1111 2345444333443 3788777
Q ss_pred EEEecCCCCCCcH-HHHHHHHcCCceEEcCCCC----cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhh
Q 007300 477 FILIPSRFEPCGL-IQLHAMRYGTVPIVASTGG----LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATY 551 (609)
Q Consensus 477 v~v~pS~~E~~gl-~~lEAma~G~PvI~s~~gg----~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~ 551 (609)
+-++-++ +|+ +++||+.+|+|+|+-..-| ....+++.+.|... -...-+.+++.++|++++++
T Consensus 342 v~~fitH---gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l--------~~~~~~~~~l~~ai~~vl~~- 409 (500)
T PF00201_consen 342 VKLFITH---GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVL--------DKNDLTEEELRAAIREVLEN- 409 (500)
T ss_dssp EEEEEES-----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEE--------GGGC-SHHHHHHHHHHHHHS-
T ss_pred ceeeeec---cccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEE--------EecCCcHHHHHHHHHHHHhh-
Confidence 7666555 555 7999999999999987533 44455555567655 01223568999999999997
Q ss_pred CHHHHHHHHHHH----HHhhCCchHHHHHHHHHHH
Q 007300 552 GTQALAEMMKNG----MAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 552 ~~~~~~~~~~~~----~~~~fs~~~~a~~~~~~~~ 582 (609)
+ .+++.+++- ..+..+....+-.|.|...
T Consensus 410 -~-~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~ 442 (500)
T PF00201_consen 410 -P-SYKENAKRLSSLFRDRPISPLERAVWWIEYVA 442 (500)
T ss_dssp -H-HHHHHHHHHHHTTT------------------
T ss_pred -h-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3 233322221 1344555555555555443
No 161
>PLN02167 UDP-glycosyltransferase family protein
Probab=90.87 E-value=3.9 Score=45.13 Aligned_cols=139 Identities=14% Similarity=0.048 Sum_probs=71.1
Q ss_pred cEEEEEeccc--cccCHHHHHHHHhhcccCCeEEEEE-eCCChhh---HHHH-HHHHHhCCCceEEEeecChHHHHHHHH
Q 007300 401 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVL-GTGKKPM---EKQL-EQLEILYPEKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 401 ~~i~~iGrl~--~~Kg~~~ll~a~~~l~~~~~~lviv-G~g~~~~---~~~l-~~l~~~~~~~v~~~~~~~~~~~~~~l~ 473 (609)
.+.+..|.+. ..+.+..+++++... +.+|+++ +...... ...+ +....+..++.... .|-... .+|+
T Consensus 282 vvyvsfGS~~~~~~~~~~ela~~l~~~---~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~-~w~PQ~--~iL~ 355 (475)
T PLN02167 282 VVFLCFGSLGSLPAPQIKEIAQALELV---GCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVC-GWAPQV--EILA 355 (475)
T ss_pred eEEEeecccccCCHHHHHHHHHHHHhC---CCcEEEEEecCcccccchhhhCChHHHHHhccCeeee-ccCCHH--HHhc
Confidence 5667778764 233455556666555 4566644 3211100 0001 11111211222222 332222 2788
Q ss_pred hCcEEEecCCCCCCcH-HHHHHHHcCCceEEcCCCC----ccc-ccccCcceeEecccc-cccccCCCCCHHHHHHHHHH
Q 007300 474 GADFILIPSRFEPCGL-IQLHAMRYGTVPIVASTGG----LVD-TVEEGFTGFQMGSFS-VDCEAVDPVDVAAVSTTVRR 546 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl-~~lEAma~G~PvI~s~~gg----~~e-~i~~~~~G~l~~~~~-~~~~~v~~~d~~~la~~I~~ 546 (609)
...+..+-++ ||. +.+||+++|+|+|+-...+ ... +++.-+.|+.+.... .+- -..-+.++++++|++
T Consensus 356 h~~vg~fvtH---~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~--~~~~~~~~l~~av~~ 430 (475)
T PLN02167 356 HKAIGGFVSH---CGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAY--GEIVKADEIAGAVRS 430 (475)
T ss_pred CcccCeEEee---CCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccccccc--CCcccHHHHHHHHHH
Confidence 7666444444 554 8999999999999886533 222 244445676541000 000 012367899999999
Q ss_pred HHHh
Q 007300 547 ALAT 550 (609)
Q Consensus 547 ll~~ 550 (609)
++.+
T Consensus 431 ~m~~ 434 (475)
T PLN02167 431 LMDG 434 (475)
T ss_pred HhcC
Confidence 9964
No 162
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=90.72 E-value=4 Score=44.68 Aligned_cols=69 Identities=20% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHHhCcEEEecCCCCCCcH-HHHHHHHcCCceEEcCCCC----cccccccC-cceeEecccccccccCCCCCHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCGL-IQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl-~~lEAma~G~PvI~s~~gg----~~e~i~~~-~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
+++..++..+-++ ||. +++||+.+|+|+|+-...+ ....+.+. +.|+-+. ..-+.++++++|
T Consensus 337 iL~h~~v~~fvtH---~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~---------~~~~~~~v~~av 404 (451)
T PLN02410 337 VLSHPAVGGFWSH---CGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE---------GDLDRGAVERAV 404 (451)
T ss_pred HhCCCccCeeeec---CchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC---------CcccHHHHHHHH
Confidence 7888777555555 554 8999999999999876433 34444443 5676541 234778999999
Q ss_pred HHHHHhh
Q 007300 545 RRALATY 551 (609)
Q Consensus 545 ~~ll~~~ 551 (609)
++++.+.
T Consensus 405 ~~lm~~~ 411 (451)
T PLN02410 405 KRLMVEE 411 (451)
T ss_pred HHHHcCC
Confidence 9999763
No 163
>PLN03007 UDP-glucosyltransferase family protein
Probab=90.35 E-value=3.8 Score=45.35 Aligned_cols=138 Identities=14% Similarity=0.065 Sum_probs=73.1
Q ss_pred CcEEEEEecccc--ccCHHHHHHHHhhcccCCeEEEE-EeCCCh------hhHHHHHHHHHhCCCceEEEeecChHHHHH
Q 007300 400 IPVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIV-LGTGKK------PMEKQLEQLEILYPEKARGVAKFNIPLAHM 470 (609)
Q Consensus 400 ~~~i~~iGrl~~--~Kg~~~ll~a~~~l~~~~~~lvi-vG~g~~------~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~ 470 (609)
..+.+..|.+.. .+.+..+++++..+ +..|++ ++.... .+.+.+.+.. .+.+++...+.+.. .
T Consensus 286 svvyvsfGS~~~~~~~~~~~~~~~l~~~---~~~flw~~~~~~~~~~~~~~lp~~~~~r~--~~~g~~v~~w~PQ~---~ 357 (482)
T PLN03007 286 SVIYLSFGSVASFKNEQLFEIAAGLEGS---GQNFIWVVRKNENQGEKEEWLPEGFEERT--KGKGLIIRGWAPQV---L 357 (482)
T ss_pred ceEEEeecCCcCCCHHHHHHHHHHHHHC---CCCEEEEEecCCcccchhhcCCHHHHHHh--ccCCEEEecCCCHH---H
Confidence 356777888643 33444444444444 455554 343210 0111111111 12345544444443 3
Q ss_pred HHHhCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----ccccccc-CcceeEecccc---cccccCCCCCHHHHH
Q 007300 471 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSFS---VDCEAVDPVDVAAVS 541 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~~-~~~G~l~~~~~---~~~~~v~~~d~~~la 541 (609)
+|+.+++.++-++ || ++++||+.+|+|+|+-...+ ....+.+ -..|+-++.-. .+ -+.-+.++++
T Consensus 358 iL~h~~v~~fvtH---~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~---~~~~~~~~l~ 431 (482)
T PLN03007 358 ILDHQATGGFVTH---CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVK---GDFISREKVE 431 (482)
T ss_pred HhccCccceeeec---CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccc---cCcccHHHHH
Confidence 7999888666665 44 48999999999999987533 2222221 13344221000 00 0223678999
Q ss_pred HHHHHHHHhh
Q 007300 542 TTVRRALATY 551 (609)
Q Consensus 542 ~~I~~ll~~~ 551 (609)
++|++++.+.
T Consensus 432 ~av~~~m~~~ 441 (482)
T PLN03007 432 KAVREVIVGE 441 (482)
T ss_pred HHHHHHhcCc
Confidence 9999999763
No 164
>PLN03004 UDP-glycosyltransferase
Probab=89.38 E-value=5.6 Score=43.51 Aligned_cols=136 Identities=12% Similarity=0.020 Sum_probs=76.8
Q ss_pred cEEEEEeccc--cccCHHHHHHHHhhcccCCeEEEEEeCCCh-------hhHHHH-HHHHHhC-CCceEEEeecChHHHH
Q 007300 401 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKK-------PMEKQL-EQLEILY-PEKARGVAKFNIPLAH 469 (609)
Q Consensus 401 ~~i~~iGrl~--~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~-------~~~~~l-~~l~~~~-~~~v~~~~~~~~~~~~ 469 (609)
-+.+..|.+. ..+-+..|..++... +..|+++=..+. .....+ +....+. +.++....+.+...
T Consensus 272 VvyvsfGS~~~~~~~q~~ela~gL~~s---~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~-- 346 (451)
T PLN03004 272 VVFLCFGSLGLFSKEQVIEIAVGLEKS---GQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP-- 346 (451)
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHC---CCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH--
Confidence 5667778874 344555666666655 334554433210 011101 1111111 12344433444443
Q ss_pred HHHHhCcEEEecCCCCCCcH-HHHHHHHcCCceEEcCC----CCccccccc-CcceeEecccccccccCCCCCHHHHHHH
Q 007300 470 MIIAGADFILIPSRFEPCGL-IQLHAMRYGTVPIVAST----GGLVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTT 543 (609)
Q Consensus 470 ~~l~~aDv~v~pS~~E~~gl-~~lEAma~G~PvI~s~~----gg~~e~i~~-~~~G~l~~~~~~~~~~v~~~d~~~la~~ 543 (609)
+|+.+++.++-++ ||. +++||+++|+|+|+-.. ......+.+ -+.|..+.. . + -..-+.++++++
T Consensus 347 -iL~H~~v~~FvTH---~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~-~-~---~~~~~~e~l~~a 417 (451)
T PLN03004 347 -VLNHKAVGGFVTH---CGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNE-S-E---TGFVSSTEVEKR 417 (451)
T ss_pred -HhCCCccceEecc---CcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecC-C-c---CCccCHHHHHHH
Confidence 7999999776666 554 89999999999999764 334445543 356765410 0 0 002377999999
Q ss_pred HHHHHHh
Q 007300 544 VRRALAT 550 (609)
Q Consensus 544 I~~ll~~ 550 (609)
|++++.+
T Consensus 418 v~~vm~~ 424 (451)
T PLN03004 418 VQEIIGE 424 (451)
T ss_pred HHHHhcC
Confidence 9999975
No 165
>PLN00164 glucosyltransferase; Provisional
Probab=89.11 E-value=12 Score=41.44 Aligned_cols=74 Identities=16% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHhCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----ccccc-ccCcceeEecccccccccCCCCCHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i-~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
+|+..++..+-++ || ++.+||+.+|+|+|+-..-+ ....+ +.-+.|+.+.....+ -..-+.++++++|
T Consensus 352 iL~h~~vg~fvtH---~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~---~~~~~~e~l~~av 425 (480)
T PLN00164 352 ILAHAAVGGFVTH---CGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKR---DNFVEAAELERAV 425 (480)
T ss_pred HhcCcccCeEEee---cccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEecccccc---CCcCcHHHHHHHH
Confidence 7898887666665 55 48999999999999976432 33333 334567654100000 0013679999999
Q ss_pred HHHHHh
Q 007300 545 RRALAT 550 (609)
Q Consensus 545 ~~ll~~ 550 (609)
++++.+
T Consensus 426 ~~vm~~ 431 (480)
T PLN00164 426 RSLMGG 431 (480)
T ss_pred HHHhcC
Confidence 999975
No 166
>PLN02173 UDP-glucosyl transferase family protein
Probab=89.05 E-value=7 Score=42.75 Aligned_cols=137 Identities=7% Similarity=0.058 Sum_probs=74.0
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEe
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILI 480 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~ 480 (609)
-+.+..|.+.. -..+.+.+.+.-|...++-+++-.+....+.+.+.+-. .++++....+.+.. .+|+..++.++
T Consensus 266 vvyvsfGS~~~-~~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~--~~~~~~i~~W~PQ~---~iL~H~~v~~F 339 (449)
T PLN02173 266 VVYIAFGSMAK-LSSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETV--DKDKSLVLKWSPQL---QVLSNKAIGCF 339 (449)
T ss_pred eEEEEeccccc-CCHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhh--cCCceEEeCCCCHH---HHhCCCccceE
Confidence 46677787542 23344555555553334433333211111111111111 13345544333433 38999887777
Q ss_pred cCCCCCCc-HHHHHHHHcCCceEEcCCCC----cccccccC-cceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 481 PSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 481 pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~~~-~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
-++ || ++++||+++|+|+|+-..-+ ....+.+. +.|+-+.. .+.+ ..-+.++++++|++++.+
T Consensus 340 vtH---cGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~--~~~~--~~~~~e~v~~av~~vm~~ 408 (449)
T PLN02173 340 MTH---CGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKA--EKES--GIAKREEIEFSIKEVMEG 408 (449)
T ss_pred Eec---CccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEee--cccC--CcccHHHHHHHHHHHhcC
Confidence 766 55 58999999999999986433 34445443 45664310 0000 012679999999999975
No 167
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=88.96 E-value=2.8 Score=41.56 Aligned_cols=102 Identities=16% Similarity=0.122 Sum_probs=61.1
Q ss_pred CCcEEEEEeccccccCH--HHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEEEeecChHHHHHHHHhC
Q 007300 399 NIPVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGVAKFNIPLAHMIIAGA 475 (609)
Q Consensus 399 ~~~~i~~iGrl~~~Kg~--~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~-~v~~~~~~~~~~~~~~l~~a 475 (609)
+..++++.|.-.+.|.. +...+.+..|.+...+++++|...+..++..+++....+. .+...+..+-.++..+++.|
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a 184 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRA 184 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTS
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcC
Confidence 33567777776777764 4488888888776688999998764334555555554332 23333445666777899999
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 476 DFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 476 Dv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
|++|-+- .|..=+ |.+.|+|+|+--
T Consensus 185 ~~~I~~D----tg~~Hl-A~a~~~p~v~lf 209 (247)
T PF01075_consen 185 DLVIGND----TGPMHL-AAALGTPTVALF 209 (247)
T ss_dssp SEEEEES----SHHHHH-HHHTT--EEEEE
T ss_pred CEEEecC----ChHHHH-HHHHhCCEEEEe
Confidence 9999764 343333 788999998874
No 168
>PLN02208 glycosyltransferase family protein
Probab=88.80 E-value=13 Score=40.60 Aligned_cols=73 Identities=7% Similarity=0.044 Sum_probs=49.8
Q ss_pred HHHhCcEEEecCCCCCCcH-HHHHHHHcCCceEEcCCCC----ccccccc-CcceeEecccccccccCCCCCHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCGL-IQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl-~~lEAma~G~PvI~s~~gg----~~e~i~~-~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
+|+...+.++-++ ||. +++||+.+|+|+|+-..-+ ....+.+ -..|..+..- .+ ..-+.+++.++|
T Consensus 324 iL~H~~v~~FvtH---cG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-~~----~~~~~~~l~~ai 395 (442)
T PLN02208 324 ILDHPSIGCFVNH---CGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSRE-KT----GWFSKESLSNAI 395 (442)
T ss_pred HhcCCccCeEEcc---CCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccc-cC----CcCcHHHHHHHH
Confidence 7899888777776 665 7999999999999976433 3343333 4567654100 00 013778999999
Q ss_pred HHHHHhh
Q 007300 545 RRALATY 551 (609)
Q Consensus 545 ~~ll~~~ 551 (609)
++++++.
T Consensus 396 ~~~m~~~ 402 (442)
T PLN02208 396 KSVMDKD 402 (442)
T ss_pred HHHhcCC
Confidence 9999753
No 169
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=88.60 E-value=4.6 Score=42.57 Aligned_cols=102 Identities=13% Similarity=0.012 Sum_probs=64.5
Q ss_pred CcEEEEEeccccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCC-CceE-EEeecChHHHHHHHHhC
Q 007300 400 IPVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYP-EKAR-GVAKFNIPLAHMIIAGA 475 (609)
Q Consensus 400 ~~~i~~iGrl~~~Kg--~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~-~~v~-~~~~~~~~~~~~~l~~a 475 (609)
..+++..|.-.+.|. .+...+.++.|.+.+.+++++|...+.-.+..+++..... ..+. ..+..+-.++..+++.|
T Consensus 184 ~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 263 (352)
T PRK10422 184 NYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHA 263 (352)
T ss_pred CeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhC
Confidence 356677777666675 4577788877766688999987654322233344443321 1222 33444666777899999
Q ss_pred cEEEecCCCCCCcHHHHHHHHcCCceEEcCC
Q 007300 476 DFILIPSRFEPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 476 Dv~v~pS~~E~~gl~~lEAma~G~PvI~s~~ 506 (609)
|++|-.- .|..=+ |.+.|+|+|+--.
T Consensus 264 ~l~v~nD----SGp~Hl-AaA~g~P~v~lfG 289 (352)
T PRK10422 264 QLFIGVD----SAPAHI-AAAVNTPLICLFG 289 (352)
T ss_pred CEEEecC----CHHHHH-HHHcCCCEEEEEC
Confidence 9999654 343333 6789999987643
No 170
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=88.54 E-value=0.11 Score=48.50 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=50.3
Q ss_pred ceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC--------cccccccCcceeEeccccc
Q 007300 456 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG--------LVDTVEEGFTGFQMGSFSV 527 (609)
Q Consensus 456 ~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg--------~~e~i~~~~~G~l~~~~~~ 527 (609)
++..+ .|. +.+..+++.||++|.- +=+.++.|++++|+|.|.-...+ ....+.+...|..+
T Consensus 56 ~v~~~-~~~-~~m~~~m~~aDlvIs~----aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~----- 124 (167)
T PF04101_consen 56 NVKVF-GFV-DNMAELMAAADLVISH----AGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIML----- 124 (167)
T ss_dssp CCEEE-CSS-SSHHHHHHHHSEEEEC----S-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCS-----
T ss_pred cEEEE-ech-hhHHHHHHHcCEEEeC----CCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcccc-----
Confidence 35443 333 2366799999988842 23478999999999998766554 22223333334432
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q 007300 528 DCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 560 (609)
Q Consensus 528 ~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 560 (609)
.-...+++.|.++|..++.+ ......+.
T Consensus 125 ---~~~~~~~~~L~~~i~~l~~~--~~~~~~~~ 152 (167)
T PF04101_consen 125 ---DESELNPEELAEAIEELLSD--PEKLKEMA 152 (167)
T ss_dssp ---ECCC-SCCCHHHHHHCHCCC--HH-SHHHC
T ss_pred ---CcccCCHHHHHHHHHHHHcC--cHHHHHHH
Confidence 01223367899999998887 44444443
No 171
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=88.53 E-value=7.7 Score=42.52 Aligned_cols=136 Identities=13% Similarity=0.132 Sum_probs=75.7
Q ss_pred cEEEEEeccc--cccCHHHHHHHHhhcccCCeEEEE-EeCC-C------hhhH---HHHHHHHHhCCCceEEEeecChHH
Q 007300 401 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIV-LGTG-K------KPME---KQLEQLEILYPEKARGVAKFNIPL 467 (609)
Q Consensus 401 ~~i~~iGrl~--~~Kg~~~ll~a~~~l~~~~~~lvi-vG~g-~------~~~~---~~l~~l~~~~~~~v~~~~~~~~~~ 467 (609)
-+.+..|.+. ..+-.+.+..++..+.+ .|++ +.+. . .... ...+.+..+.+++.... .|-.+.
T Consensus 263 VvyvsfGS~~~l~~~q~~ela~gL~~s~~---~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~-~W~PQ~ 338 (455)
T PLN02152 263 VIYVSFGTMVELSKKQIEELARALIEGKR---PFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIV-SWCSQI 338 (455)
T ss_pred eEEEEecccccCCHHHHHHHHHHHHHcCC---CeEEEEecCcccccccccccccccccchhHHHhccCCeEEE-eeCCHH
Confidence 4667778765 45566777777777632 4444 3321 0 0000 01123333334444333 343222
Q ss_pred HHHHHHhCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----cccccccC-cceeEecccccccccCCCCCHHHHH
Q 007300 468 AHMIIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVS 541 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~~~-~~G~l~~~~~~~~~~v~~~d~~~la 541 (609)
.+|+..++.++-++ || ++++||+.+|+|+|+-...+ ....+.+. +.|+-+.. +.+ +.-+.++++
T Consensus 339 --~iL~h~~vg~fvtH---~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~-~~~----~~~~~e~l~ 408 (455)
T PLN02152 339 --EVLRHRAVGCFVTH---CGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRE-NSE----GLVERGEIR 408 (455)
T ss_pred --HHhCCcccceEEee---CCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeec-CcC----CcCcHHHHH
Confidence 37999998777666 44 47999999999999876433 33344331 23443210 000 123679999
Q ss_pred HHHHHHHHh
Q 007300 542 TTVRRALAT 550 (609)
Q Consensus 542 ~~I~~ll~~ 550 (609)
++|++++.+
T Consensus 409 ~av~~vm~~ 417 (455)
T PLN02152 409 RCLEAVMEE 417 (455)
T ss_pred HHHHHHHhh
Confidence 999999975
No 172
>PLN02207 UDP-glycosyltransferase
Probab=87.99 E-value=12 Score=41.18 Aligned_cols=138 Identities=12% Similarity=0.046 Sum_probs=73.2
Q ss_pred cEEEEEeccc--cccCHHHHHHHHhhcccCCeEEEEE-eCCChhhHHHH-HHHHHhCCCceEEEeecChHHHHHHHHhCc
Q 007300 401 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVL-GTGKKPMEKQL-EQLEILYPEKARGVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 401 ~~i~~iGrl~--~~Kg~~~ll~a~~~l~~~~~~lviv-G~g~~~~~~~l-~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 476 (609)
.+.+..|.+. ..+-++.++.++..+ +..|+++ .+......+.+ +.+..+.+++.....+.+.. .+|+...
T Consensus 277 VVyvSfGS~~~~~~~q~~ela~~l~~~---~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~---~IL~H~~ 350 (468)
T PLN02207 277 VVFLCFGSMGRLRGPLVKEIAHGLELC---QYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQV---EILAHKA 350 (468)
T ss_pred EEEEEeccCcCCCHHHHHHHHHHHHHC---CCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHH---HHhcccc
Confidence 5667777764 233455666666655 3455543 32110000001 12222233344333333333 2788887
Q ss_pred EEEecCCCCCCcH-HHHHHHHcCCceEEcCCCC----ccccccc-CcceeEecc-cccccccCCCCCHHHHHHHHHHHHH
Q 007300 477 FILIPSRFEPCGL-IQLHAMRYGTVPIVASTGG----LVDTVEE-GFTGFQMGS-FSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 477 v~v~pS~~E~~gl-~~lEAma~G~PvI~s~~gg----~~e~i~~-~~~G~l~~~-~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
+.++-++ ||. +++||+.+|+|+|+-...+ ....+.+ -+.|+-++. ...+. -..-+.+++.++|++++.
T Consensus 351 vg~FvTH---~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~--~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 351 VGGFVSH---CGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHS--DEIVNANEIETAIRCVMN 425 (468)
T ss_pred cceeeec---CccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEeccccccc--CCcccHHHHHHHHHHHHh
Confidence 7666665 554 7999999999999876543 3333332 455653310 00000 012367899999999996
No 173
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=87.44 E-value=7.4 Score=40.80 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=62.9
Q ss_pred cEEEEEeccccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceE-EEeecChHHHHHHHHhCc
Q 007300 401 PVIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KAR-GVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg--~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~-~v~-~~~~~~~~~~~~~l~~aD 476 (609)
.+++..|.-.+.|. .+...+.++.|.+.+.+++++|...+.-.+..+++....+. ++. ..+..+-.++..+++.||
T Consensus 183 ~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 262 (344)
T TIGR02201 183 YIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHAR 262 (344)
T ss_pred EEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCC
Confidence 45566666555554 56777777777666789999986542222334444433322 233 334446677778999999
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 477 FILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 477 v~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
++|-.- .|..=+ |.|.|+|+|+=-
T Consensus 263 l~Vs~D----SGp~Hl-AaA~g~p~v~Lf 286 (344)
T TIGR02201 263 LFIGVD----SVPMHM-AAALGTPLVALF 286 (344)
T ss_pred EEEecC----CHHHHH-HHHcCCCEEEEE
Confidence 999763 343333 788999999864
No 174
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.43 E-value=3.7 Score=41.64 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=65.5
Q ss_pred EEEEEecccccc--CHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhC-CCceE-EEeecChHHHHHHHHhCcE
Q 007300 402 VIGFIGRLEEQK--GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY-PEKAR-GVAKFNIPLAHMIIAGADF 477 (609)
Q Consensus 402 ~i~~iGrl~~~K--g~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~-~~~v~-~~~~~~~~~~~~~l~~aDv 477 (609)
+++..|.-.+.| ..+...+.++.+.+.+++++++|... .++..+++.... ..++. ..+..+-.++..+++.||+
T Consensus 124 i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~--e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l 201 (279)
T cd03789 124 VVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPA--ERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADL 201 (279)
T ss_pred EEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechh--hHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCE
Confidence 555666555555 45788888888876689999998755 334445554443 12222 2333455667789999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCceEEcCCCCcc
Q 007300 478 ILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLV 510 (609)
Q Consensus 478 ~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~ 510 (609)
++-+. .|..-+ |.+.|+|+|+--.....
T Consensus 202 ~I~~D----sg~~Hl-A~a~~~p~i~l~g~~~~ 229 (279)
T cd03789 202 VVTND----SGPMHL-AAALGTPTVALFGPTDP 229 (279)
T ss_pred EEeeC----CHHHHH-HHHcCCCEEEEECCCCc
Confidence 99774 344444 46999999887544333
No 175
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=87.28 E-value=8.6 Score=42.45 Aligned_cols=135 Identities=10% Similarity=-0.003 Sum_probs=69.5
Q ss_pred cEEEEEecccc--ccCHHHHHHHHhhcccCCeEEEEEeCCC-h---hhHHHHHHHHHhC-CCceEEEeecChHHHHHHHH
Q 007300 401 PVIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGK-K---PMEKQLEQLEILY-PEKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 401 ~~i~~iGrl~~--~Kg~~~ll~a~~~l~~~~~~lvivG~g~-~---~~~~~l~~l~~~~-~~~v~~~~~~~~~~~~~~l~ 473 (609)
.+.+..|.+.. .+-+..+++++... +..|+++-..+ . ........+..+. +..++...+.+.. .+|+
T Consensus 285 vVyvsfGS~~~~~~~~~~ela~gL~~~---~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~---~vL~ 358 (477)
T PLN02863 285 VVYVCFGSQVVLTKEQMEALASGLEKS---GVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQV---AILS 358 (477)
T ss_pred eEEEEeeceecCCHHHHHHHHHHHHhC---CCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHH---HHhc
Confidence 46677787642 22345555555544 55666553321 0 0000011111111 2224333333433 3787
Q ss_pred hCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----cccccc-cCcceeEecccccccccCCCCCHHHHHHHHHHH
Q 007300 474 GADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRA 547 (609)
Q Consensus 474 ~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~-~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~l 547 (609)
...+.++-++ || .+++||+++|+|+|+-...+ ....+. .-+.|.-+.. +. -..-+.++++++|+++
T Consensus 359 h~~v~~fvtH---~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~---~~--~~~~~~~~v~~~v~~~ 430 (477)
T PLN02863 359 HRAVGAFLTH---CGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCE---GA--DTVPDSDELARVFMES 430 (477)
T ss_pred CCCcCeEEec---CCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEecc---CC--CCCcCHHHHHHHHHHH
Confidence 7555555444 44 48999999999999976533 333333 3356764410 00 0122678999999998
Q ss_pred HH
Q 007300 548 LA 549 (609)
Q Consensus 548 l~ 549 (609)
+.
T Consensus 431 m~ 432 (477)
T PLN02863 431 VS 432 (477)
T ss_pred hh
Confidence 84
No 176
>PLN02554 UDP-glycosyltransferase family protein
Probab=86.78 E-value=11 Score=41.64 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=72.8
Q ss_pred cEEEEEeccc--cccCHHHHHHHHhhcccCCeEEEEEeCCC------------hhhHHH-HHHHHHhCCCceEEEeecCh
Q 007300 401 PVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGK------------KPMEKQ-LEQLEILYPEKARGVAKFNI 465 (609)
Q Consensus 401 ~~i~~iGrl~--~~Kg~~~ll~a~~~l~~~~~~lvivG~g~------------~~~~~~-l~~l~~~~~~~v~~~~~~~~ 465 (609)
.+.+..|.+. ..+-+..++.++..+ +.+|+++-.++ ....+. -.....+..++.....+.+.
T Consensus 276 vvyvsfGS~~~~~~~~~~~la~~l~~~---~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ 352 (481)
T PLN02554 276 VVFLCFGSMGGFSEEQAREIAIALERS---GHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQ 352 (481)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHc---CCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCH
Confidence 4667778864 244566666666665 44555542211 000011 11111122233433333343
Q ss_pred HHHHHHHHhCcEEEecCCCCCCcH-HHHHHHHcCCceEEcCCCC----cc-cccccCcceeEeccc-cccc--ccCCCCC
Q 007300 466 PLAHMIIAGADFILIPSRFEPCGL-IQLHAMRYGTVPIVASTGG----LV-DTVEEGFTGFQMGSF-SVDC--EAVDPVD 536 (609)
Q Consensus 466 ~~~~~~l~~aDv~v~pS~~E~~gl-~~lEAma~G~PvI~s~~gg----~~-e~i~~~~~G~l~~~~-~~~~--~~v~~~d 536 (609)
. .+|+...+.++-++ ||. +++||+.+|+|+|+-...+ .. ..++.-+.|..+..- ..+. ..-..-+
T Consensus 353 ~---~iL~H~~v~~FvtH---~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~ 426 (481)
T PLN02554 353 V---AVLAKPAIGGFVTH---CGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVT 426 (481)
T ss_pred H---HHhCCcccCccccc---CccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEc
Confidence 3 27866666555554 544 8999999999999986533 33 334444566654100 0000 0001236
Q ss_pred HHHHHHHHHHHHH
Q 007300 537 VAAVSTTVRRALA 549 (609)
Q Consensus 537 ~~~la~~I~~ll~ 549 (609)
.+++.++|++++.
T Consensus 427 ~e~l~~av~~vm~ 439 (481)
T PLN02554 427 AEEIERGIRCLME 439 (481)
T ss_pred HHHHHHHHHHHhc
Confidence 7899999999996
No 177
>PLN02764 glycosyltransferase family protein
Probab=86.19 E-value=19 Score=39.33 Aligned_cols=72 Identities=8% Similarity=0.083 Sum_probs=47.7
Q ss_pred HHHhCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----cccccc-cCcceeEecccccccccCCCCCHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~-~~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
+++...+.++-++ || ++.+||+.+|+|+|+-...+ ....+. +-..|+.+.. .+. ..-+.+++.++|
T Consensus 330 vL~h~~v~~FvtH---~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~--~~~---~~~~~e~i~~av 401 (453)
T PLN02764 330 ILSHPSVGCFVSH---CGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAR--EET---GWFSKESLRDAI 401 (453)
T ss_pred HhcCcccCeEEec---CCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEecc--ccC---CccCHHHHHHHH
Confidence 7888777655555 44 48999999999999987544 334443 3355654310 000 023779999999
Q ss_pred HHHHHh
Q 007300 545 RRALAT 550 (609)
Q Consensus 545 ~~ll~~ 550 (609)
++++++
T Consensus 402 ~~vm~~ 407 (453)
T PLN02764 402 NSVMKR 407 (453)
T ss_pred HHHhcC
Confidence 999976
No 178
>PLN02555 limonoid glucosyltransferase
Probab=86.00 E-value=18 Score=39.90 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=71.0
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEEE-eCC--ChhhH-HHH-HHHHHhCCCceEEEeecChHHHHHHHHhC
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVL-GTG--KKPME-KQL-EQLEILYPEKARGVAKFNIPLAHMIIAGA 475 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lviv-G~g--~~~~~-~~l-~~l~~~~~~~v~~~~~~~~~~~~~~l~~a 475 (609)
.+.+..|.+. .-..+.+.+.+..|...+.+|+++ ... ..... ..+ +....+.+++.....+.+.. .+|+.-
T Consensus 279 VvyvsfGS~~-~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~---~iL~H~ 354 (480)
T PLN02555 279 VVYISFGTVV-YLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQE---KVLAHP 354 (480)
T ss_pred eeEEEecccc-CCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHH---HHhCCC
Confidence 4666778764 222334444444443335576655 311 00000 001 12222233344333333332 267655
Q ss_pred cEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----cccccccC-cceeEecccccccccCCCCCHHHHHHHHHHHHH
Q 007300 476 DFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVEEG-FTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALA 549 (609)
Q Consensus 476 Dv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~~~-~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~ 549 (609)
.+.++-++ || ++.+||+.+|+|+|+-..-+ ....+.+. +.|+-++.-..+- ..-+.+++.++|++++.
T Consensus 355 ~v~~FvtH---~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~---~~v~~~~v~~~v~~vm~ 428 (480)
T PLN02555 355 SVACFVTH---CGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAEN---KLITREEVAECLLEATV 428 (480)
T ss_pred ccCeEEec---CCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCcccc---CcCcHHHHHHHHHHHhc
Confidence 55444444 44 48999999999999986533 33444443 6676542000000 11257899999999996
Q ss_pred h
Q 007300 550 T 550 (609)
Q Consensus 550 ~ 550 (609)
+
T Consensus 429 ~ 429 (480)
T PLN02555 429 G 429 (480)
T ss_pred C
Confidence 5
No 179
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=85.71 E-value=15 Score=37.83 Aligned_cols=98 Identities=15% Similarity=0.176 Sum_probs=63.0
Q ss_pred cEEEEEeccccccCH--HHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEE
Q 007300 401 PVIGFIGRLEEQKGS--DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~--~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
.++++.|.-.+.|.. +...+.++.|.+.+.+++++|.++. ..+..+++....+. ....+..+-.++..+++.||++
T Consensus 181 ~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~-e~~~~~~i~~~~~~-~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 181 YAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA-EKQRAERIAEALPG-AVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred EEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH-HHHHHHHHHhhCCC-CeecCCCCHHHHHHHHHcCCEE
Confidence 466677765566654 5777888777656788888864442 22334455444443 2333455666677899999999
Q ss_pred EecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 479 LIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 479 v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
|-.-. |..=+ |.+.|+|+|+--
T Consensus 259 I~~DS----gp~Hl-Aaa~g~P~i~lf 280 (319)
T TIGR02193 259 VGVDT----GLTHL-AAALDKPTVTLY 280 (319)
T ss_pred EeCCC----hHHHH-HHHcCCCEEEEE
Confidence 97642 33323 678899998754
No 180
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=85.24 E-value=20 Score=39.59 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=48.1
Q ss_pred HHHhCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----ccccc-ccCcceeEecccccccccCCCCCHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i-~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
+++...+..+-++ || ++.+||+.+|+|+|+-...+ ....+ +.-+.|..+.. .+ ..-+.++++++|
T Consensus 351 iL~h~~vg~FitH---~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~--~~----~~~~~~~l~~av 421 (481)
T PLN02992 351 ILAHQAVGGFLTH---CGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDD--PK----EVISRSKIEALV 421 (481)
T ss_pred HhCCcccCeeEec---CchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecC--CC----CcccHHHHHHHH
Confidence 7888887665555 55 48999999999999987543 33444 34456665410 00 123779999999
Q ss_pred HHHHHh
Q 007300 545 RRALAT 550 (609)
Q Consensus 545 ~~ll~~ 550 (609)
++++.+
T Consensus 422 ~~vm~~ 427 (481)
T PLN02992 422 RKVMVE 427 (481)
T ss_pred HHHhcC
Confidence 999965
No 181
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=84.60 E-value=50 Score=33.69 Aligned_cols=100 Identities=14% Similarity=-0.005 Sum_probs=58.8
Q ss_pred cEEEEEeccc---cccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCc
Q 007300 401 PVIGFIGRLE---EQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 401 ~~i~~iGrl~---~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 476 (609)
+.|++.-|-. ..+..+.+.+++..+.+ .+.+++++.-....-.+..+++....+.........+..++-.+++.||
T Consensus 173 ~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~ 252 (298)
T TIGR03609 173 PVIVVSLRPWPLLDVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASAR 252 (298)
T ss_pred CeEEEEECCCCcCCHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCC
Confidence 4565554431 12235677888888765 3777766653322233445555555433222223445666667899999
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 477 FILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 477 v~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
++|-... - ..+=|+.+|+|+|+-+
T Consensus 253 ~vI~~Rl---H--~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 253 LVIGMRL---H--ALILAAAAGVPFVALS 276 (298)
T ss_pred EEEEech---H--HHHHHHHcCCCEEEee
Confidence 7765443 1 3555899999999765
No 182
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.44 E-value=6.3 Score=41.27 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=69.9
Q ss_pred cEEEEEe-ccccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcE
Q 007300 401 PVIGFIG-RLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADF 477 (609)
Q Consensus 401 ~~i~~iG-rl~~~Kg--~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv 477 (609)
.+++..| .-...|. .+...+.++.+.+...++++.|... .++..+++...++..+...+.-+-.++..+++.||+
T Consensus 177 ~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~--e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l 254 (334)
T COG0859 177 YIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPD--EEERAEEIAKGLPNAVILAGKTSLEELAALIAGADL 254 (334)
T ss_pred eEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChH--HHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCE
Confidence 4666777 5546665 4577888888877778999999773 667777787777643334445556667779999999
Q ss_pred EEecCCCCCCcHHHHHHHHcCCceEEcCC
Q 007300 478 ILIPSRFEPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 478 ~v~pS~~E~~gl~~lEAma~G~PvI~s~~ 506 (609)
+|-+. .|..=+ |.+.|+|+|+--.
T Consensus 255 ~I~~D----Sg~~Hl-AaA~~~P~I~iyg 278 (334)
T COG0859 255 VIGND----SGPMHL-AAALGTPTIALYG 278 (334)
T ss_pred EEccC----ChHHHH-HHHcCCCEEEEEC
Confidence 88765 344434 7899999998753
No 183
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=84.16 E-value=1.1 Score=42.99 Aligned_cols=40 Identities=30% Similarity=0.396 Sum_probs=30.0
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCCc
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQY 131 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~~ 131 (609)
||||+.+..- . .+.-+..|.++|.+.||+|.|++|...+-
T Consensus 1 M~ILlTNDDG-i------~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDG-I------DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS--T------TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred CeEEEEcCCC-C------CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 8999999862 1 22237789999988899999999986643
No 184
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.04 E-value=5.5 Score=40.25 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCCcEEEEEeccccc-------cCHHHHHHHHhhccc--CCeEEEEEeCCCh---hhHHHHHHHHHhCCCceEEEeecCh
Q 007300 398 RNIPVIGFIGRLEEQ-------KGSDILAAAIPHFIK--ENVQIIVLGTGKK---PMEKQLEQLEILYPEKARGVAKFNI 465 (609)
Q Consensus 398 ~~~~~i~~iGrl~~~-------Kg~~~ll~a~~~l~~--~~~~lvivG~g~~---~~~~~l~~l~~~~~~~v~~~~~~~~ 465 (609)
.+++.|++....... .....+++.+..+.+ ++.+++|-=-... .....+.++.. .. ++... .+.
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~-~~-~~~~~--~~~ 190 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPN-LP-NVVII--DDD 190 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhc-CC-CeEEE--CCC
Confidence 356788888887653 234555666665544 5788776543211 11122333222 22 12222 122
Q ss_pred HHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC
Q 007300 466 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 466 ~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~ 506 (609)
-....++..||.++.- .+.+.+||+.+|+||++--.
T Consensus 191 ~~~~~Ll~~s~~Vvti-----nStvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 191 VNLYELLEQSDAVVTI-----NSTVGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCHHHHHHhCCEEEEE-----CCHHHHHHHHcCCceEEecC
Confidence 2345689999988754 35689999999999999653
No 185
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.89 E-value=5 Score=35.21 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=25.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
|||+|+.. |.....=..+-+..|+.+.+++||+|.++.+.-
T Consensus 1 Mki~fvmD---pi~~i~~~kDTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 1 MKIAFVMD---PIESIKPYKDTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -EEEEEES----GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred CeEEEEeC---CHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCc
Confidence 89999986 321111123456779999999999999999873
No 186
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=82.44 E-value=15 Score=38.61 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=63.8
Q ss_pred HHHHHhCCCCCCCCcEEEEEecc-ccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC----ceE-
Q 007300 387 ALQAEVGLPVDRNIPVIGFIGRL-EEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE----KAR- 458 (609)
Q Consensus 387 ~~~~~~gl~~~~~~~~i~~iGrl-~~~Kg--~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~----~v~- 458 (609)
.+.+.+++..+ +..+++..|.- .+.|. .+...+.++.|.+.+++++++|... .++..+++....+. ++.
T Consensus 169 ~~~~~~~~~~~-~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~--e~~~~~~i~~~~~~~~~~~~~~ 245 (348)
T PRK10916 169 ETCAAFSLSSE-RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAK--DHEAGNEILAALNTEQQAWCRN 245 (348)
T ss_pred HHHHHcCCCCC-CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHH--hHHHHHHHHHhcccccccceee
Confidence 34445554322 22455566653 35554 4566777777655678999998654 23333444333321 122
Q ss_pred EEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 459 GVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 459 ~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
..+..+-.++..+++.||++|-.- .|..=+ |.+.|+|+|+=-
T Consensus 246 l~g~~sL~el~ali~~a~l~I~nD----TGp~Hl-AaA~g~P~valf 287 (348)
T PRK10916 246 LAGETQLEQAVILIAACKAIVTND----SGLMHV-AAALNRPLVALY 287 (348)
T ss_pred ccCCCCHHHHHHHHHhCCEEEecC----ChHHHH-HHHhCCCEEEEE
Confidence 223345566667999999999654 333333 788999998753
No 187
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=82.04 E-value=5.8 Score=32.59 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=24.7
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecC
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNI 266 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~ 266 (609)
+.||| |.|...+.+..-.+.... ..|.++|||-|++
T Consensus 50 ~I~IV-HgH~a~S~l~hE~i~hA~-----~mGlktVfTDHSL 85 (90)
T PF08288_consen 50 RIDIV-HGHQAFSTLCHEAILHAR-----TMGLKTVFTDHSL 85 (90)
T ss_pred CeeEE-EeehhhhHHHHHHHHHHH-----hCCCcEEeecccc
Confidence 58999 999766655544333221 1599999999964
No 188
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=80.57 E-value=2.7 Score=37.12 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=47.8
Q ss_pred eEEEEEeC-CChhhHHHHHHHHHhCCC-ceEEEeecCh----------------------HHHHHHHHhCcEEEecCCCC
Q 007300 430 VQIIVLGT-GKKPMEKQLEQLEILYPE-KARGVAKFNI----------------------PLAHMIIAGADFILIPSRFE 485 (609)
Q Consensus 430 ~~lvivG~-g~~~~~~~l~~l~~~~~~-~v~~~~~~~~----------------------~~~~~~l~~aDv~v~pS~~E 485 (609)
+++.|+|. |. +-+.+.+...+.++ ++........ +.+..++..+|+++--|.-+
T Consensus 1 mrV~i~G~~Gr--MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGR--MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSH--HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HH
T ss_pred CEEEEECCCCH--HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChH
Confidence 35677777 55 66666666555443 3333332222 34567888899998877555
Q ss_pred CCcHHHHHHHHcCCceEEcCCCCccc
Q 007300 486 PCGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 486 ~~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
..--.+-.++.+|+|+|+..+|.-.+
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTTG~~~~ 104 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTTGFSDE 104 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-SSSHHH
T ss_pred HhHHHHHHHHhCCCCEEEECCCCCHH
Confidence 55455667888999999988877443
No 189
>PLN00414 glycosyltransferase family protein
Probab=78.97 E-value=56 Score=35.76 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=48.4
Q ss_pred HHHhCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----cccccc-cCcceeEecccccccccCCCCCHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i~-~~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
+|+.+.+.++-++ || ++.+||+.+|+|+|+-...+ ....+. +-+.|..+... .+ ..-+.+++++++
T Consensus 325 vL~h~~v~~fvtH---~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~-~~----~~~~~~~i~~~v 396 (446)
T PLN00414 325 ILSHPSVGCFVNH---CGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRE-DS----GWFSKESLRDTV 396 (446)
T ss_pred HhcCCccceEEec---CchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccc-cC----CccCHHHHHHHH
Confidence 7888866555554 55 47999999999999976533 444443 44667654100 00 024789999999
Q ss_pred HHHHHh
Q 007300 545 RRALAT 550 (609)
Q Consensus 545 ~~ll~~ 550 (609)
++++.+
T Consensus 397 ~~~m~~ 402 (446)
T PLN00414 397 KSVMDK 402 (446)
T ss_pred HHHhcC
Confidence 999975
No 190
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=77.53 E-value=17 Score=37.61 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=59.6
Q ss_pred EEEEEeccccccC--HHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 402 VIGFIGRLEEQKG--SDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 402 ~i~~iGrl~~~Kg--~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
+++..|.-...|. .+...+.+..+.+.+.++++.|.++. -.+..+++....+ .+...+..+-.++..+++.||++|
T Consensus 181 i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~-e~~~~~~i~~~~~-~~~l~g~~sL~elaali~~a~l~I 258 (322)
T PRK10964 181 LVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH-EEQRAKRLAEGFP-YVEVLPKLSLEQVARVLAGAKAVV 258 (322)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH-HHHHHHHHHccCC-cceecCCCCHHHHHHHHHhCCEEE
Confidence 3344454344554 45677888777656788888633331 2333444444332 233344556667778999999999
Q ss_pred ecCCCCCCcHHHHHHHHcCCceEEcCC
Q 007300 480 IPSRFEPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 480 ~pS~~E~~gl~~lEAma~G~PvI~s~~ 506 (609)
-.- .|..=+ |.++|+|+|+-=.
T Consensus 259 ~nD----SGp~Hl-A~A~g~p~valfG 280 (322)
T PRK10964 259 SVD----TGLSHL-TAALDRPNITLYG 280 (322)
T ss_pred ecC----CcHHHH-HHHhCCCEEEEEC
Confidence 664 233333 7889999988653
No 191
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.69 E-value=59 Score=34.48 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=102.8
Q ss_pred EEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC-----hhhHHHHHHHHHh-CCCceEEEeecC-----hHHHHHH
Q 007300 403 IGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEIL-YPEKARGVAKFN-----IPLAHMI 471 (609)
Q Consensus 403 i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~-----~~~~~~l~~l~~~-~~~~v~~~~~~~-----~~~~~~~ 471 (609)
|=|.|+.++.+=..+..+.+.+++++++.+||+-+.. .++.+++.+.... .|+++.+...-. .+++..+
T Consensus 157 iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 157 VPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred CeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 4467788888999999999999999999999997743 2445555555544 356676665432 2333345
Q ss_pred HHhCcE--EEecCCC----CCCcHHHHHHHHcCCceEEcCCCCcccccccC----cceeEecccccccccCCCCCHHHHH
Q 007300 472 IAGADF--ILIPSRF----EPCGLIQLHAMRYGTVPIVASTGGLVDTVEEG----FTGFQMGSFSVDCEAVDPVDVAAVS 541 (609)
Q Consensus 472 l~~aDv--~v~pS~~----E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~----~~G~l~~~~~~~~~~v~~~d~~~la 541 (609)
=...|+ ++++-.- -+..++..+ +.++|||---+|-..|-++.= ..+-+ .--+|.+.|.
T Consensus 237 k~~vdvg~vIlTKlDGhakGGgAlSaVa--aTksPIiFIGtGEhmdDlE~F~pk~Fvsrl----------LGmGDi~glv 304 (483)
T KOG0780|consen 237 KETVDVGAVILTKLDGHAKGGGALSAVA--ATKSPIIFIGTGEHMDDLEPFDPKPFVSRL----------LGMGDIEGLV 304 (483)
T ss_pred HHhhccceEEEEecccCCCCCceeeehh--hhCCCEEEEecCccccccCCCChHHHHHHH----------hccccHHHHH
Confidence 556665 3444321 334455554 568899887777655544321 01111 2457888888
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q 007300 542 TTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLL 582 (609)
Q Consensus 542 ~~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~ 582 (609)
+.+.++..+. .+ ++.++-..-+||...+.+++..+..
T Consensus 305 ek~~ev~~~d-~~---el~~kl~~gkFtlrd~y~Qfq~imk 341 (483)
T KOG0780|consen 305 EKVQEVGKDD-AK---ELVEKLKQGKFTLRDFYDQFQNIMK 341 (483)
T ss_pred HHHHHHhhhh-HH---HHHHHHHhCCccHHHHHHHHHHHHh
Confidence 8888877331 22 2233334567999999888877665
No 192
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=75.41 E-value=4.5 Score=36.01 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=31.2
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeE-EEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V-~vit~~ 127 (609)
|||+++... +|+ .+-.+.-...+++++.+.||+| .|+-..
T Consensus 1 m~~~iv~~~-~Py--~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTG-PAY--GTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcC-CCC--CCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 899999876 676 4555677888999999999994 666543
No 193
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=72.71 E-value=12 Score=38.19 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=46.9
Q ss_pred HHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCC---CCcccccccCcceeEecccccccccCCCCCHHHHHHHH
Q 007300 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAST---GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~---gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
..+.|+.+.+++.|.-...+..-++|||++||.+|.-.. -.+.|++.=....+. |+..+..++.+.|
T Consensus 230 ~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~----------v~~~~~~~l~~iL 299 (302)
T PF03016_consen 230 YMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVR----------VPEADLPELPEIL 299 (302)
T ss_pred HHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEE----------ECHHHHHHHHHHH
Confidence 446899999999988777788899999999997766542 224455533334443 3666666666555
Q ss_pred H
Q 007300 545 R 545 (609)
Q Consensus 545 ~ 545 (609)
+
T Consensus 300 ~ 300 (302)
T PF03016_consen 300 R 300 (302)
T ss_pred h
Confidence 4
No 194
>PLN02534 UDP-glycosyltransferase
Probab=70.97 E-value=95 Score=34.44 Aligned_cols=78 Identities=13% Similarity=0.017 Sum_probs=46.7
Q ss_pred HHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC----ccccc-ccCcceeEeccc-ccccccCC----CCCHHH
Q 007300 470 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSF-SVDCEAVD----PVDVAA 539 (609)
Q Consensus 470 ~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg----~~e~i-~~~~~G~l~~~~-~~~~~~v~----~~d~~~ 539 (609)
.+++..++.++-+. +=.++++||+.+|+|+|+-...+ ....+ +.-+.|+-+|.- ..+...-+ .-+.++
T Consensus 356 ~iL~h~~v~~fvtH--~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~ee 433 (491)
T PLN02534 356 LILSHPAIGGFLTH--CGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDE 433 (491)
T ss_pred HHhcCCccceEEec--CccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHH
Confidence 37888888666555 23358999999999999987543 21222 233445543210 00000000 136789
Q ss_pred HHHHHHHHHH
Q 007300 540 VSTTVRRALA 549 (609)
Q Consensus 540 la~~I~~ll~ 549 (609)
++++|++++.
T Consensus 434 v~~~v~~~m~ 443 (491)
T PLN02534 434 VEKAVKTLMD 443 (491)
T ss_pred HHHHHHHHhc
Confidence 9999999995
No 195
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=69.49 E-value=34 Score=32.50 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=40.9
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCch
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 304 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (609)
+||+++.+ .+-+.|.++....+ .++|+++.- ++.....+. . +.+.
T Consensus 95 ~P~~~i~~---EtElWPnll~~a~~-----~~ip~~LvN------arls~~s~~------~---------------~~~~ 139 (186)
T PF04413_consen 95 RPDLLIWV---ETELWPNLLREAKR-----RGIPVVLVN------ARLSERSFR------R---------------YRRF 139 (186)
T ss_dssp --SEEEEE---S----HHHHHH----------S-EEEEE------E----------------------------------
T ss_pred CCCEEEEE---ccccCHHHHHHHhh-----cCCCEEEEe------eeeccccch------h---------------hhhh
Confidence 59998444 34566777766543 588887653 222211110 0 1122
Q ss_pred hHHHHHHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecC
Q 007300 305 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVN 353 (609)
Q Consensus 305 ~~~~k~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~n 353 (609)
-.+.+..++..|.|++.|+..++.+.+ .|.+.+ ++.+.-|
T Consensus 140 ~~~~r~~l~~f~~i~aqs~~da~r~~~---lG~~~~------~v~v~Gn 179 (186)
T PF04413_consen 140 PFLFRPLLSRFDRILAQSEADAERFRK---LGAPPE------RVHVTGN 179 (186)
T ss_dssp -HHHHHHGGG-SEEEESSHHHHHHHHT---TT-S--------SEEE---
T ss_pred HHHHHHHHHhCCEEEECCHHHHHHHHH---cCCCcc------eEEEeCc
Confidence 346788899999999999999999997 787766 7776655
No 196
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=68.86 E-value=52 Score=30.81 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=44.7
Q ss_pred CCceEEEecccccchHHHHHHHhhcCCCcccCceEEEEEecCccCCccccccccccCCccccccccccccCCCCCcCCch
Q 007300 225 PYDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRK 304 (609)
Q Consensus 225 ~pDvV~h~h~~~~~~~~~~l~~~~~~~~~~~~~~~v~~iH~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 304 (609)
+||+| .+|...++...+++....+..++ .+.|+||.-= ..+. ..+.+
T Consensus 92 rPdvi-i~nGpg~~vp~~~~~~l~~~~~~-~~~kiIyIES----~aRv-----~~lSl---------------------- 138 (170)
T PF08660_consen 92 RPDVI-ISNGPGTCVPVCLAAKLLRLLGL-RGSKIIYIES----FARV-----KTLSL---------------------- 138 (170)
T ss_pred CCCEE-EEcCCceeeHHHHHHHHHHHhhc-cCCcEEEEEe----eeec-----CCCch----------------------
Confidence 69999 99988888777776665433332 3788886521 0000 00110
Q ss_pred hHHHHHHhhcCCEEEeeCHHHHHHHhc
Q 007300 305 INWMKAGILESDMVLTVSPHYAQELVS 331 (609)
Q Consensus 305 ~~~~k~~~~~ad~vi~vS~~~~~~l~~ 331 (609)
-=|.....+|.+++.-+..++.+.+
T Consensus 139 --TGklly~~aD~f~VQW~~l~~~yp~ 163 (170)
T PF08660_consen 139 --TGKLLYPFADRFIVQWEELAEKYPR 163 (170)
T ss_pred --HHHHHHHhCCEEEEcCHHHHhHCCC
Confidence 1133445699999999999997653
No 197
>PLN00016 RNA-binding protein; Provisional
Probab=68.16 E-value=6.3 Score=41.99 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=30.5
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.|||++++.+ .||.|..-..|++.|.++||+|++++..
T Consensus 52 ~~~VLVt~~~------~GatG~iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTN------SGGHAFIGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEecc------CCCceeEhHHHHHHHHHCCCEEEEEecC
Confidence 4688888665 4667766677999999999999999865
No 198
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=67.94 E-value=36 Score=37.78 Aligned_cols=160 Identities=14% Similarity=0.099 Sum_probs=99.0
Q ss_pred cEEEEEeccc-cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEE
Q 007300 401 PVIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFIL 479 (609)
Q Consensus 401 ~~i~~iGrl~-~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v 479 (609)
+..+..|.-. -.||-+..++++.+. -.++-.|.+... ....+ +.-|.-++..+..+...++..+-++|
T Consensus 278 ~~AlVyGK~~~~w~~k~~~l~~l~~~--~eih~tV~~~~~--~~~~~-------P~~V~NHG~l~~~ef~~lL~~akvfi 346 (559)
T PF15024_consen 278 NQALVYGKERYMWKGKEKYLDVLHKY--MEIHGTVYDEPQ--RPPNV-------PSFVKNHGILSGDEFQQLLRKAKVFI 346 (559)
T ss_pred ceeEEEccchhhhcCcHHHHHHHHhh--cEEEEEeccCCC--CCccc-------chhhhhcCcCCHHHHHHHHHhhhEee
Confidence 4555666644 477888889888876 245555544322 11111 22244456678888889999999998
Q ss_pred ecCC-CCCCcHHHHHHHHcCCceEEcCCCCcc-----cccccCcc---------ee--EecccccccccCCCCCHHHHHH
Q 007300 480 IPSR-FEPCGLIQLHAMRYGTVPIVASTGGLV-----DTVEEGFT---------GF--QMGSFSVDCEAVDPVDVAAVST 542 (609)
Q Consensus 480 ~pS~-~E~~gl~~lEAma~G~PvI~s~~gg~~-----e~i~~~~~---------G~--l~~~~~~~~~~v~~~d~~~la~ 542 (609)
=-.. +| |-+-+||++.|+|.|-....... +...+.-+ .. .+|... +-.||.+|.+++.+
T Consensus 347 GlGfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~Ph--VytVd~~n~~~v~~ 422 (559)
T PF15024_consen 347 GLGFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPH--VYTVDINNSTEVEA 422 (559)
T ss_pred ecCCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCe--EEEEcCCCHHHHHH
Confidence 5432 33 45689999999999887643211 11211100 00 012111 12569999999999
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHH
Q 007300 543 TVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLN 583 (609)
Q Consensus 543 ~I~~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~~~ 583 (609)
+|++++...- .-.+--.||-+.+.++...+++.
T Consensus 423 Avk~il~~~v--------~Py~P~efT~egmLeRv~~~ie~ 455 (559)
T PF15024_consen 423 AVKAILATPV--------EPYLPYEFTCEGMLERVNALIEK 455 (559)
T ss_pred HHHHHHhcCC--------CCcCCcccCHHHHHHHHHHHHHh
Confidence 9999998731 11234668888888888766653
No 199
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=67.27 E-value=7.5 Score=34.47 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=19.6
Q ss_pred chHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 101 GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+|=-.=...|+++|.++||+|.+.++.
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETG
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeecc
Confidence 343334556999999999999988865
No 200
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=67.27 E-value=83 Score=34.57 Aligned_cols=158 Identities=13% Similarity=0.011 Sum_probs=79.6
Q ss_pred cEEEEEeccc-----cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhC----CCceEEEeecChHHHHHH
Q 007300 401 PVIGFIGRLE-----EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILY----PEKARGVAKFNIPLAHMI 471 (609)
Q Consensus 401 ~~i~~iGrl~-----~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~----~~~v~~~~~~~~~~~~~~ 471 (609)
-+++..|.+. +.+-...++.++..+ +++.|++.=...+... +.... ++++....+.+..++ +
T Consensus 279 vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~--~~~~FiW~~~~~~~~~-----~~~~~~~~~~~nV~~~~W~PQ~~l--l 349 (496)
T KOG1192|consen 279 VVYISFGSMVNSADLPEEQKKELAKALESL--QGVTFLWKYRPDDSIY-----FPEGLPNRGRGNVVLSKWAPQNDL--L 349 (496)
T ss_pred eEEEECCcccccccCCHHHHHHHHHHHHhC--CCceEEEEecCCcchh-----hhhcCCCCCcCceEEecCCCcHHH--h
Confidence 4555567664 455667788888877 5666666544331111 22222 234555444454442 1
Q ss_pred HHhCcEEEecCCCCCCcH-HHHHHHHcCCceEEcCC----CCcccccc-cCcceeEecccccccccCCCCCHHHHHHHHH
Q 007300 472 IAGADFILIPSRFEPCGL-IQLHAMRYGTVPIVAST----GGLVDTVE-EGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 545 (609)
Q Consensus 472 l~~aDv~v~pS~~E~~gl-~~lEAma~G~PvI~s~~----gg~~e~i~-~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~ 545 (609)
++..-+.++-++ ||+ +++|++.+|+|+|+-.. .-....+. ++..+.+. ..+..+.+ +.+++.
T Consensus 350 l~H~~v~~FvTH---gG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~--------~~~~~~~~-~~~~~~ 417 (496)
T KOG1192|consen 350 LDHPAVGGFVTH---GGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLD--------KRDLVSEE-LLEAIK 417 (496)
T ss_pred cCCCcCcEEEEC---CcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEe--------hhhcCcHH-HHHHHH
Confidence 333334444443 554 56999999999995432 22333333 44444432 11233334 788888
Q ss_pred HHHHhhCH-HHHHHHHHHHHHhhCCchHHHHHHHHH
Q 007300 546 RALATYGT-QALAEMMKNGMAQDLSWKGPAKKWEET 580 (609)
Q Consensus 546 ~ll~~~~~-~~~~~~~~~~~~~~fs~~~~a~~~~~~ 580 (609)
.++.+.+- ...+++.+.-..+..+- ..+..|.+.
T Consensus 418 ~il~~~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~ 452 (496)
T KOG1192|consen 418 EILENEEYKEAAKRLSEILRDQPISP-ELAVKWVEF 452 (496)
T ss_pred HHHcChHHHHHHHHHHHHHHcCCCCH-HHHHHHHHH
Confidence 88775221 12222222222344555 555555443
No 201
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=66.22 E-value=73 Score=30.84 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=64.7
Q ss_pred CcEEEEEecc-ccccCHHHHHHHHhhcccCCe--EEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCc
Q 007300 400 IPVIGFIGRL-EEQKGSDILAAAIPHFIKENV--QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 400 ~~~i~~iGrl-~~~Kg~~~ll~a~~~l~~~~~--~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 476 (609)
..+++|+|.= .+.+. .|++.+++|++.++ .+|..|..... .+.+.++....+.+ =.++.
T Consensus 108 ~riVvFvGSpi~e~ek--eLv~~akrlkk~~Vaidii~FGE~~~~-~e~l~~fida~N~~---------------~~gsh 169 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESEK--ELVKLAKRLKKNKVAIDIINFGEAENN-TEKLFEFIDALNGK---------------GDGSH 169 (259)
T ss_pred eEEEEEecCcchhhHH--HHHHHHHHHHhcCeeEEEEEecccccc-HHHHHHHHHHhcCC---------------CCCce
Confidence 3578899983 33333 77777788877654 45555654321 23344443332211 12455
Q ss_pred EEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 477 FILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 477 v~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
++.+|+- + +|+-...-.|++.-+.||..--.....+-|-| . |+|.+--+||-+|+--++.
T Consensus 170 lv~Vppg----~--~L~d~l~ssPii~ge~g~a~~~~~a~g~~f~f---g-----vdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 170 LVSVPPG----P--LLSDALLSSPIIQGEDGGAAAGLGANGMDFEF---G-----VDPEDDPELALALRLSMEE 229 (259)
T ss_pred EEEeCCC----c--cHHHHhhcCceeccCccccccccccccccccc---C-----CCcccCHHHHHHHHhhHHH
Confidence 6666653 1 34444556778877654433322222223333 1 3777777999999877765
No 202
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=64.08 E-value=72 Score=30.92 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=65.6
Q ss_pred EEEEEecccc--ccCHHHHHHHHhhcccCCeEEEEEeCCCh---hhHHHHHHHHHhC-CCceEEEeecChHHHHHHHHhC
Q 007300 402 VIGFIGRLEE--QKGSDILAAAIPHFIKENVQIIVLGTGKK---PMEKQLEQLEILY-PEKARGVAKFNIPLAHMIIAGA 475 (609)
Q Consensus 402 ~i~~iGrl~~--~Kg~~~ll~a~~~l~~~~~~lvivG~g~~---~~~~~l~~l~~~~-~~~v~~~~~~~~~~~~~~l~~a 475 (609)
+++..|.... ..+.+.+.+.+.++...+.+++++.+... ++...+.+...++ +-.+.....++.+...+.+..|
T Consensus 2 l~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~a 81 (212)
T cd03146 2 LLLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEA 81 (212)
T ss_pred EEEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcC
Confidence 3444444443 45677888887777666788999887642 3344444444455 4334433333344545689999
Q ss_pred cEEEecCC--------CCCCcH--HHHHHHHcCCceEEcCCCC
Q 007300 476 DFILIPSR--------FEPCGL--IQLHAMRYGTVPIVASTGG 508 (609)
Q Consensus 476 Dv~v~pS~--------~E~~gl--~~lEAma~G~PvI~s~~gg 508 (609)
|++++|-- +...++ .+-++...|+|++.++.|.
T Consensus 82 d~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 82 DVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred CEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 99999952 122233 3445566899999988664
No 203
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=61.65 E-value=10 Score=35.82 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=26.7
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
|||++|+.. |-+| ..++++..++||+|+.|+.+.
T Consensus 1 mKIaiIgAs-------G~~G---s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGAS-------GKAG---SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecC-------chhH---HHHHHHHHhCCCeeEEEEeCh
Confidence 899999874 4444 347788889999999999763
No 204
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=61.44 E-value=29 Score=32.63 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=52.7
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChH------------HHHHHHHhCcEEEe--cCCCCC---CcHHH
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP------------LAHMIIAGADFILI--PSRFEP---CGLIQ 491 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~------------~~~~~l~~aDv~v~--pS~~E~---~gl~~ 491 (609)
+-++-|+|-|. .-+.+.++...++-+|..+-.+..+ .+.++++.||++++ |..-|+ ++-..
T Consensus 36 g~tvgIiG~G~--IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~ 113 (178)
T PF02826_consen 36 GKTVGIIGYGR--IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEF 113 (178)
T ss_dssp TSEEEEESTSH--HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHH
T ss_pred CCEEEEEEEcC--CcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeee
Confidence 55667777766 5566666666666556555554332 23468999999877 433344 55679
Q ss_pred HHHHHcCCceEEcCCCCccc
Q 007300 492 LHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 492 lEAma~G~PvI~s~~gg~~e 511 (609)
++.|--|.-+|.+.-|++.|
T Consensus 114 l~~mk~ga~lvN~aRG~~vd 133 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVD 133 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-
T ss_pred eeccccceEEEeccchhhhh
Confidence 99999999899988887654
No 205
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=61.36 E-value=25 Score=36.61 Aligned_cols=81 Identities=26% Similarity=0.427 Sum_probs=58.3
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecCh------------HHHHHHHHhCcEEEe--cCCCCCCcHH---H
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI------------PLAHMIIAGADFILI--PSRFEPCGLI---Q 491 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~------------~~~~~~l~~aDv~v~--pS~~E~~gl~---~ 491 (609)
+-.+-|+|-|. .-+.+.+....++-++..+-.|.. ..+..+++.||++++ |..-|+.|+. .
T Consensus 142 gkTvGIiG~G~--IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~ 219 (324)
T COG0111 142 GKTVGIIGLGR--IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEE 219 (324)
T ss_pred CCEEEEECCCH--HHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHH
Confidence 45677888877 777777777777766766666422 236679999999765 6666776664 7
Q ss_pred HHHHHcCCceEEcCCCCccc
Q 007300 492 LHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 492 lEAma~G~PvI~s~~gg~~e 511 (609)
+..|--|...|-+.-|++.|
T Consensus 220 ~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 220 LAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HhhCCCCeEEEECCCcceec
Confidence 77888888888888888665
No 206
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=60.84 E-value=22 Score=28.54 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHhhcCCEEEeeCHHHHHHHhcccCCCccchhhhccCCeeEecCCCCCCCcCCCC
Q 007300 310 AGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLT 364 (609)
Q Consensus 310 ~~~~~ad~vi~vS~~~~~~l~~~~~~g~~~~~~~~~~~i~vI~nGvd~~~~~p~~ 364 (609)
......|.|++......+++++ .|.+ ++..+|-++|+..+.|..
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~---~G~~--------~V~yLPLAa~~~~~~p~~ 57 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRN---LGAE--------NVFYLPLAANPERFRPIP 57 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHH---cCCC--------CEEEccccCCHHHhCccc
Confidence 4567899999999999999997 5655 899999999999998874
No 207
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.68 E-value=13 Score=38.51 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.3
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+.|||++|+ .|++|.+ ++..|++.||+|++++..
T Consensus 3 ~~~m~I~IiG--------~GaiG~~---lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIG--------TGAIGGF---YGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEEC--------CCHHHHH---HHHHHHHCCCeEEEEEeC
Confidence 5579999997 3666644 567788999999999865
No 208
>PRK10037 cell division protein; Provisional
Probab=58.74 E-value=9.6 Score=38.00 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=27.6
Q ss_pred ceEEEEEeecCCccccchHHHH--hhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~--~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+-|.+. .||+|.- ..+|+.+|+++|++|.+|=..
T Consensus 1 ~~~iav~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 1 MAILGLQGV------RGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred CcEEEEecC------CCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 666555543 5777754 578999999999999888544
No 209
>PLN03015 UDP-glucosyl transferase
Probab=58.37 E-value=1.9e+02 Score=31.86 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=46.0
Q ss_pred HHHhCcEEEecCCCCCCc-HHHHHHHHcCCceEEcCCCC----ccccc-ccCcceeEecccccccccCCCCCHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCG-LIQLHAMRYGTVPIVASTGG----LVDTV-EEGFTGFQMGSFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~g-l~~lEAma~G~PvI~s~~gg----~~e~i-~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I 544 (609)
+++...+..+-++ || ++.+||+.+|+|+|+-...+ ....+ +.-..|.-+.....+ ..-..++++++|
T Consensus 348 vL~h~~vg~fvtH---~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~----~~v~~e~i~~~v 420 (470)
T PLN03015 348 ILSHRSIGGFLSH---CGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSE----KVIGREEVASLV 420 (470)
T ss_pred HhccCccCeEEec---CCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccC----CccCHHHHHHHH
Confidence 6787777666555 55 47999999999999986533 22333 333556544100000 123668999999
Q ss_pred HHHHH
Q 007300 545 RRALA 549 (609)
Q Consensus 545 ~~ll~ 549 (609)
+++++
T Consensus 421 ~~lm~ 425 (470)
T PLN03015 421 RKIVA 425 (470)
T ss_pred HHHHc
Confidence 99995
No 210
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=57.61 E-value=28 Score=36.02 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=49.6
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec--------ChHHHHHHHHhCcEEEe--cCCCCC---CcHHHHHHH
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--------NIPLAHMIIAGADFILI--PSRFEP---CGLIQLHAM 495 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~--------~~~~~~~~l~~aDv~v~--pS~~E~---~gl~~lEAm 495 (609)
+-.+-|+|-|. .-+.+.++...++-+|..+-.. ....+.++++.||++++ |..-|+ ++-..++.|
T Consensus 145 gktvGIiG~G~--IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M 222 (311)
T PRK08410 145 GKKWGIIGLGT--IGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL 222 (311)
T ss_pred CCEEEEECCCH--HHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC
Confidence 33455555554 4444444444444334332211 11245679999999776 444455 555699999
Q ss_pred HcCCceEEcCCCCccc
Q 007300 496 RYGTVPIVASTGGLVD 511 (609)
Q Consensus 496 a~G~PvI~s~~gg~~e 511 (609)
--|.-+|-+.-|++.|
T Consensus 223 k~~a~lIN~aRG~vVD 238 (311)
T PRK08410 223 KDGAILINVGRGGIVN 238 (311)
T ss_pred CCCeEEEECCCccccC
Confidence 9999999999888665
No 211
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=57.30 E-value=18 Score=34.79 Aligned_cols=37 Identities=24% Similarity=0.071 Sum_probs=29.5
Q ss_pred CCceEEEEEeecCCccccchHHHHh--hchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~--~~La~aL~~~Gh~V~vit~~ 127 (609)
+++||++-. +||.+.+- .+|.+.|.+.||+|.++.+.
T Consensus 4 ~~k~IllgV--------TGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGL--------TGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEE--------cCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 467887665 46777664 79999999999999998865
No 212
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=56.90 E-value=17 Score=32.94 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=31.7
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++|+.... +.|-...++..+.+.+.+.|++|.++-..
T Consensus 1 Mkilii~gS~r---~~~~t~~l~~~~~~~l~~~g~e~~~i~l~ 40 (152)
T PF03358_consen 1 MKILIINGSPR---KNSNTRKLAEAVAEQLEEAGAEVEVIDLA 40 (152)
T ss_dssp -EEEEEESSSS---TTSHHHHHHHHHHHHHHHTTEEEEEEECT
T ss_pred CEEEEEECcCC---CCCHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 89999987632 35777778888888898999999999866
No 213
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=56.76 E-value=13 Score=38.25 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=29.4
Q ss_pred CCCceEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|.+|||+-|+ . .||+|. .+.+|+.+|+++|++|-+|=.+
T Consensus 1 ~~~~~~iai~-~------KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 1 MSKLRQIAFY-G------KGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred CCcceEEEEE-C------CCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4578866664 2 477665 5688999999999999888544
No 214
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=56.52 E-value=6.4 Score=43.11 Aligned_cols=138 Identities=21% Similarity=0.187 Sum_probs=92.2
Q ss_pred HHHHhCCCCCCCCcEEEEEeccccccC----HHHHHHHHhhccc-C----CeEEEEEeCCC-h--hhHHHHHHHHHh---
Q 007300 388 LQAEVGLPVDRNIPVIGFIGRLEEQKG----SDILAAAIPHFIK-E----NVQIIVLGTGK-K--PMEKQLEQLEIL--- 452 (609)
Q Consensus 388 ~~~~~gl~~~~~~~~i~~iGrl~~~Kg----~~~ll~a~~~l~~-~----~~~lvivG~g~-~--~~~~~l~~l~~~--- 452 (609)
+.+++|...+++...=+-+-|+.++|. +..++-.+.++++ + --+.+++|+.. + .+-+++-+|...
T Consensus 551 le~e~~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~e~~k~fvprtvm~GGKaapgY~mAK~Iiklit~V~d 630 (843)
T KOG2099|consen 551 LEKEYGVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKEEPAKAFVPRTVMIGGKAAPGYHMAKLIIKLITAVAD 630 (843)
T ss_pred HHHHhCcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCceEEEEcCccCchhHHHHHHHHHHHHHHH
Confidence 445667666555444467889999884 3444555555654 2 23567777532 1 233334333221
Q ss_pred ----CC-----CceEEEeecChHHHHHHHHhCcEEEecC--CCCCCcHHHHHHHHcCCceEEcCCCCccccccc--Ccce
Q 007300 453 ----YP-----EKARGVAKFNIPLAHMIIAGADFILIPS--RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEE--GFTG 519 (609)
Q Consensus 453 ----~~-----~~v~~~~~~~~~~~~~~l~~aDv~v~pS--~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~--~~~G 519 (609)
.+ .+|.+...|....+..++.++|+-=.-| -.|+.|..-+.-|..|+-.|.|-.|..+|+-++ .+|-
T Consensus 631 vVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGANVEm~eE~GeeN~ 710 (843)
T KOG2099|consen 631 VVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEMAEEAGEENF 710 (843)
T ss_pred HhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccchHHHHHcCcccE
Confidence 11 2577778888888888899999854444 458999998999999999999999999888775 3578
Q ss_pred eEeccc
Q 007300 520 FQMGSF 525 (609)
Q Consensus 520 ~l~~~~ 525 (609)
|+||..
T Consensus 711 FiFG~~ 716 (843)
T KOG2099|consen 711 FIFGMR 716 (843)
T ss_pred EEeccc
Confidence 888843
No 215
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=56.48 E-value=10 Score=38.80 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=27.8
Q ss_pred ceEEEEEeecCCccccchHH--HHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++.+ .||+| +.+.+|+.+|+++|++|.+|=..
T Consensus 1 m~ia~~g--------KGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYG--------KGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEEC--------CCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 7877766 46766 45778999999999999888765
No 216
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.30 E-value=82 Score=29.43 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=65.2
Q ss_pred ccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEee----cChHHHHHHH-----HhCcEEEe
Q 007300 410 EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAK----FNIPLAHMII-----AGADFILI 480 (609)
Q Consensus 410 ~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~----~~~~~~~~~l-----~~aDv~v~ 480 (609)
+..-|.|.+.+.+....+++.++.++|+.++..++....+...+|+ +...+. |+.++...++ +.+|++++
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~-l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPG-LRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCC-eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 3456889999999988777889999999887788888888888875 333332 3333333332 57788887
Q ss_pred cCCC---CCCcHHHHHHHHcCCceEEcCCCCccccccc
Q 007300 481 PSRF---EPCGLIQLHAMRYGTVPIVASTGGLVDTVEE 515 (609)
Q Consensus 481 pS~~---E~~gl~~lEAma~G~PvI~s~~gg~~e~i~~ 515 (609)
-.-. |-| +.+-....-+.|.-..||.-++...
T Consensus 108 glG~PkQE~~---~~~~~~~l~~~v~i~vG~~~d~~aG 142 (172)
T PF03808_consen 108 GLGAPKQERW---IARHRQRLPAGVIIGVGGAFDFLAG 142 (172)
T ss_pred ECCCCHHHHH---HHHHHHHCCCCEEEEECchhhhhcc
Confidence 5432 333 2232333333366667777776654
No 217
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=54.83 E-value=1.2e+02 Score=29.18 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=61.0
Q ss_pred cccCHHHHHHHHhhcccCCeEEEEEeCCC---hhhHHHHHHHHHhCCCceEEEeec---ChHHHHHHHHhCcEEEecC--
Q 007300 411 EQKGSDILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILYPEKARGVAKF---NIPLAHMIIAGADFILIPS-- 482 (609)
Q Consensus 411 ~~Kg~~~ll~a~~~l~~~~~~lvivG~g~---~~~~~~l~~l~~~~~~~v~~~~~~---~~~~~~~~l~~aDv~v~pS-- 482 (609)
.....+.+-+.+......+.+++++.+.. +.+.+...+...+++..+...... +.+...+.+..||+++++-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~ 90 (210)
T cd03129 11 KAHARPILQDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGN 90 (210)
T ss_pred ccChHHHHHHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCc
Confidence 34455555555555543567888887654 234444445555555445544443 3466667999999999974
Q ss_pred ------CCCCC-cH-HHHHHHHcCCceEEcCCCCc
Q 007300 483 ------RFEPC-GL-IQLHAMRYGTVPIVASTGGL 509 (609)
Q Consensus 483 ------~~E~~-gl-~~lEAma~G~PvI~s~~gg~ 509 (609)
.+... .+ .+.+....|+|++.++.|.+
T Consensus 91 ~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~ 125 (210)
T cd03129 91 QLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAA 125 (210)
T ss_pred HHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHH
Confidence 12223 22 47888888999999987653
No 218
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=53.85 E-value=86 Score=29.25 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=64.2
Q ss_pred ccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEE-Ee-ecChHH----HHHH-HHhCcEEEec
Q 007300 410 EEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARG-VA-KFNIPL----AHMI-IAGADFILIP 481 (609)
Q Consensus 410 ~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~-~v~~-~~-~~~~~~----~~~~-l~~aDv~v~p 481 (609)
+..-|.|.+.+.++...+.+.++.++|+.++..++..+.+..++|+ ++.+ +. .|..+. +..+ -..+|++++-
T Consensus 27 ~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 27 ERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVG 106 (171)
T ss_pred cccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 3456899999999998777899999999887788888888888885 3443 22 232222 1112 3567888875
Q ss_pred CC---CCCCcHHHHHHHHcCCceEEcCCCCcccccc
Q 007300 482 SR---FEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 514 (609)
Q Consensus 482 S~---~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~ 514 (609)
-- .|-|-....+.+ ..+++.+ +||.-|+..
T Consensus 107 lG~PkQE~~~~~~~~~l--~~~v~~~-vG~~~d~~a 139 (171)
T cd06533 107 LGAPKQELWIARHKDRL--PVPVAIG-VGGSFDFLA 139 (171)
T ss_pred CCCCHHHHHHHHHHHHC--CCCEEEE-eceeeEecc
Confidence 32 355544444433 3333333 677666554
No 219
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.29 E-value=1.3e+02 Score=34.09 Aligned_cols=182 Identities=16% Similarity=0.051 Sum_probs=101.9
Q ss_pred HHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc--CCeEEEEEeC---CChhhHHHHHHHHHhCCCceEEEee
Q 007300 388 LQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGT---GKKPMEKQLEQLEILYPEKARGVAK 462 (609)
Q Consensus 388 ~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~--~~~~lvivG~---g~~~~~~~l~~l~~~~~~~v~~~~~ 462 (609)
.|..++||.+. .++.....+ +|=-...++.+.++.+ |+-.|++.-. |...+....+++..+ ++++.+..-
T Consensus 749 ~r~~y~Lp~d~--vvf~~FNqL--yKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~-p~riifs~v 823 (966)
T KOG4626|consen 749 TRSQYGLPEDA--VVFCNFNQL--YKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLE-PDRIIFSPV 823 (966)
T ss_pred CCCCCCCCCCe--EEEeechhh--hcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCC-ccceeeccc
Confidence 35678888654 444444433 4433445555555444 6666665433 223344455544433 244554432
Q ss_pred cChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccccc-----cCcceeEecccccccccCCCCCH
Q 007300 463 FNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE-----EGFTGFQMGSFSVDCEAVDPVDV 537 (609)
Q Consensus 463 ~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~-----~~~~G~l~~~~~~~~~~v~~~d~ 537 (609)
-..++--.-..-+|+.+=+...-|- .+-+|.+..|+|+|.-...-+..-|. .-+.|-+ -..+-
T Consensus 824 a~k~eHvrr~~LaDv~LDTplcnGh-TTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hl-----------iak~~ 891 (966)
T KOG4626|consen 824 AAKEEHVRRGQLADVCLDTPLCNGH-TTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHL-----------IAKNR 891 (966)
T ss_pred cchHHHHHhhhhhhhcccCcCcCCc-ccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHH-----------HhhhH
Confidence 2233322356778998877665332 24578889999998765322221111 1112222 24566
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHH---HH--HhhCCchHHHHHHHHHHHHHHHcC
Q 007300 538 AAVSTTVRRALATYGTQALAEMMKN---GM--AQDLSWKGPAKKWEETLLNLEVAG 588 (609)
Q Consensus 538 ~~la~~I~~ll~~~~~~~~~~~~~~---~~--~~~fs~~~~a~~~~~~~~~l~~~~ 588 (609)
++..+.-.++-.+ .+.+.++... .+ ..-|+-...+..++++|.++++..
T Consensus 892 eEY~~iaV~Latd--~~~L~~lr~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y 945 (966)
T KOG4626|consen 892 EEYVQIAVRLATD--KEYLKKLRAKLRKARASSPLFDTKQYAKGLERLYLQMWKKY 945 (966)
T ss_pred HHHHHHHHHhhcC--HHHHHHHHHHHHHHhcCCCccCchHHHHHHHHHHHHHHHHh
Confidence 7777776676665 4444444322 22 245999999999999999999864
No 220
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=53.16 E-value=12 Score=39.01 Aligned_cols=75 Identities=24% Similarity=0.460 Sum_probs=46.6
Q ss_pred ceEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEeecCC-CccccCCCceEEEEEeCCEEeeEEEEEeeEcC
Q 007300 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPRYD-QYKDAWDTDVVIELKVGDKIEKVRFFHCHKRG 161 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (609)
|+|+|++. .||+|. ....++-.|++.|.+|.+++.... ...+.+ ...++.....+. ++
T Consensus 2 ~riv~f~G-------KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f------~~elg~~~~~I~------~n 62 (322)
T COG0003 2 TRIVFFTG-------KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVF------DLELGHDPRKVG------PN 62 (322)
T ss_pred cEEEEEec-------CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhh------ccccCCchhhcC------CC
Confidence 68888885 599998 666677889999988988876532 233322 222222211111 56
Q ss_pred eeEEEEeCcchhhhhcC
Q 007300 162 VDRVFVDHPWFLAKVWG 178 (609)
Q Consensus 162 v~~~~v~~~~~~~~~~~ 178 (609)
++..-+|....+.+-|+
T Consensus 63 L~a~eiD~~~~l~ey~~ 79 (322)
T COG0003 63 LDALELDPEKALEEYWD 79 (322)
T ss_pred CceeeecHHHHHHHHHH
Confidence 77777776665555553
No 221
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=52.60 E-value=1.9e+02 Score=26.58 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=63.8
Q ss_pred EEEEEeCCChhhHHHHHHHHHhCCCceEEEeec-ChHHHHHHH--HhCcEEEecCCC-CCCcHHHHHHHHcCCceEEcCC
Q 007300 431 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMII--AGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 431 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~~l--~~aDv~v~pS~~-E~~gl~~lEAma~G~PvI~s~~ 506 (609)
+++|+.+.+ .....+.+.....++ ......+ +.......+ ...|++++-... +.-|..+++.+....|+|+...
T Consensus 3 ~ilivd~~~-~~~~~l~~~L~~~~~-~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~ 80 (196)
T PRK10360 3 TVALIDDHL-IVRSGFAQLLGLEPD-LQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV 80 (196)
T ss_pred EEEEECCcH-HHHHHHHHHHccCCC-cEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEEC
Confidence 567777654 234444444332222 2222222 333332333 246888886554 4467778888877788866543
Q ss_pred CCcc----cccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 507 GGLV----DTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 507 gg~~----e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
.... +.+..|..+++. .|.+.+++.++|..++..
T Consensus 81 ~~~~~~~~~~~~~ga~~~i~----------kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 81 HDSPALVEQALNAGARGFLS----------KRCSPDELIAAVHTVATG 118 (196)
T ss_pred CCCHHHHHHHHHcCCcEEEE----------CCCCHHHHHHHHHHHHcC
Confidence 3222 345567788876 889999999999988753
No 222
>PRK06932 glycerate dehydrogenase; Provisional
Probab=52.56 E-value=35 Score=35.36 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=50.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecC-------hHHHHHHHHhCcEEEe--cCCCCC---CcHHHHHHHH
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN-------IPLAHMIIAGADFILI--PSRFEP---CGLIQLHAMR 496 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~-------~~~~~~~l~~aDv~v~--pS~~E~---~gl~~lEAma 496 (609)
+-++.|+|-|. .-+.+.++...++-++..+-... ...+.++++.||++++ |..-|+ ++-..++.|-
T Consensus 147 gktvgIiG~G~--IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk 224 (314)
T PRK06932 147 GSTLGVFGKGC--LGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMK 224 (314)
T ss_pred CCEEEEECCCH--HHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCC
Confidence 34555666655 44444444444444443322111 1235679999999876 444455 4556999999
Q ss_pred cCCceEEcCCCCccc
Q 007300 497 YGTVPIVASTGGLVD 511 (609)
Q Consensus 497 ~G~PvI~s~~gg~~e 511 (609)
-|..+|-+.-|++.|
T Consensus 225 ~ga~lIN~aRG~~Vd 239 (314)
T PRK06932 225 PTAFLINTGRGPLVD 239 (314)
T ss_pred CCeEEEECCCccccC
Confidence 999999999888665
No 223
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=52.40 E-value=66 Score=30.32 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=62.3
Q ss_pred cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCC-ceEEE-eecChHHHHH----H-HHhCcEEEecC---
Q 007300 413 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPE-KARGV-AKFNIPLAHM----I-IAGADFILIPS--- 482 (609)
Q Consensus 413 Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~-~v~~~-~~~~~~~~~~----~-l~~aDv~v~pS--- 482 (609)
-|.|++.+.++...+.+.++.++|..+...++..+.+..++|+ ++.+. +.|+.++... + -+++|++++--
T Consensus 32 ~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 32 AGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred ChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3889999999988777889999999888888888899999885 44444 3333332221 1 25778887743
Q ss_pred CCCCCcHHHHHHHHcCCceEEcCCCCcccccc
Q 007300 483 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 514 (609)
Q Consensus 483 ~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~ 514 (609)
+.|-|-.... -....+++ -.+||.-|+..
T Consensus 112 kQE~~~~~~~--~~~~~~v~-~gvGg~fd~~a 140 (177)
T TIGR00696 112 KQEIWMRNHR--HLKPDAVM-IGVGGSFDVFS 140 (177)
T ss_pred HhHHHHHHhH--HhCCCcEE-EEeceeeeecc
Confidence 2343332111 22233343 34788777664
No 224
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=51.98 E-value=1.1e+02 Score=33.67 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=53.1
Q ss_pred HHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCce-EEcCC--CCcccccccCcceeEecccccccccCCCCCHHHHHHH
Q 007300 467 LAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVP-IVAST--GGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTT 543 (609)
Q Consensus 467 ~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~Pv-I~s~~--gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~ 543 (609)
...+.++.+-+++.|.-.+...-.++||+.+||.+ |.++. ..+.+++.-..-.+.+ ...++..+
T Consensus 336 ~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v----------~~~~v~~~--- 402 (464)
T KOG1021|consen 336 NYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFV----------PEKDVPEL--- 402 (464)
T ss_pred hHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEE----------EHHHhhhH---
Confidence 34468999999999999998888999999999855 55553 3344444443333332 33334444
Q ss_pred HHHHHHhhCHHHHHHHHHHH
Q 007300 544 VRRALATYGTQALAEMMKNG 563 (609)
Q Consensus 544 I~~ll~~~~~~~~~~~~~~~ 563 (609)
|++.|..-...+..+|.++.
T Consensus 403 ~~~iL~~i~~~~~~~m~~~v 422 (464)
T KOG1021|consen 403 IKNILLSIPEEEVLRMRENV 422 (464)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 56666554444555555443
No 225
>CHL00175 minD septum-site determining protein; Validated
Probab=51.29 E-value=18 Score=36.63 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=30.4
Q ss_pred cccccCCCceEEEEEeecCCccccchH--HHHhhchhHHHHhCCCeEEEEeec
Q 007300 77 LMIVCGVGLNILFVGTEVAPWSKTGGL--GDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 77 ~~~~~~~~MkIl~vs~~~~P~~~~GG~--~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.+++....+||+.|... .||+ .+...+|+.+|++.|++|.+|=..
T Consensus 7 ~~~~~~~~~~vi~v~s~------KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 7 DKEKSATMSRIIVITSG------KGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred hhhhcCCCceEEEEEcC------CCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 33443333466666653 3544 467789999999999999888544
No 226
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=50.79 E-value=25 Score=40.44 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=27.4
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
.+.++|++|... .+|+. +|.+|+++|++|+|+=.
T Consensus 79 ~~~~~VlIVGgG------IaGLa-----lAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 79 KKKSRVLVAGGG------IGGLV-----FALAAKKKGFDVLVFEK 112 (668)
T ss_pred cCCCCEEEECCC------HHHHH-----HHHHHHhcCCeEEEEec
Confidence 346899999864 36776 89999999999999864
No 227
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=50.67 E-value=16 Score=37.75 Aligned_cols=38 Identities=34% Similarity=0.582 Sum_probs=28.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhc--hhHHHHhCCCeEEEEeecCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGG--LPPALAANGHRVMTIAPRYD 129 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~--La~aL~~~Gh~V~vit~~~~ 129 (609)
|||+|++. .||+|.-+.. +|..++++|++|-+++.+..
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa 40 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVSTDPA 40 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEESSTT
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC
Confidence 89999986 4777766555 77888999999999987643
No 228
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=50.42 E-value=2.1e+02 Score=28.97 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=65.9
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeC-----------CC-hhhHHHHHHHHHhCCCceEEEeecChHHH
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT-----------GK-KPMEKQLEQLEILYPEKARGVAKFNIPLA 468 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~-----------g~-~~~~~~l~~l~~~~~~~v~~~~~~~~~~~ 468 (609)
+.++.+|- .-....+.+++.++.|++..++++..|. |. .+-.+.+.++..+.+..+ ....++...+
T Consensus 27 ~~~~iaGP-Csie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~-~te~~d~~~~ 104 (266)
T PRK13398 27 EKIIIAGP-CAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPV-VTEVMDTRDV 104 (266)
T ss_pred CEEEEEeC-CcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCE-EEeeCChhhH
Confidence 34444444 5556788888888888877788888882 11 233455666666666323 2234566666
Q ss_pred HHHHHhCcEEEecCCC-CCCcHHHHHHHHcCCceEEcCC
Q 007300 469 HMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 469 ~~~l~~aDv~v~pS~~-E~~gl~~lEAma~G~PvI~s~~ 506 (609)
..+...+|++-++|+. +.+++ +-++...|+||+.+.-
T Consensus 105 ~~l~~~vd~~kIga~~~~n~~L-L~~~a~~gkPV~lk~G 142 (266)
T PRK13398 105 EEVADYADMLQIGSRNMQNFEL-LKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHhCCEEEECcccccCHHH-HHHHhcCCCcEEEeCC
Confidence 5566669999999984 44332 3344567999998874
No 229
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=50.25 E-value=17 Score=36.49 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
++||||+.+..-.. .-| +..|.++|.+.| +|.|++|..++
T Consensus 4 ~~M~ILltNDDGi~---a~G----i~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCNDDGIE---GEG----IHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEECCCCCC---CHH----HHHHHHHHHhCC-CEEEEcCCCCC
Confidence 46999988876322 112 667888898888 89999998553
No 230
>PLN02572 UDP-sulfoquinovose synthase
Probab=49.53 E-value=21 Score=39.05 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=23.6
Q ss_pred cCCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEe
Q 007300 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 81 ~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit 125 (609)
..+.|||++.+. .|++| ..|++.|.++||+|.++.
T Consensus 44 ~~~~k~VLVTGa-------tGfIG---s~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 44 SSKKKKVMVIGG-------DGYCG---WATALHLSKRGYEVAIVD 78 (442)
T ss_pred cccCCEEEEECC-------CcHHH---HHHHHHHHHCCCeEEEEe
Confidence 344567655432 34444 558899999999998875
No 231
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=49.46 E-value=24 Score=33.77 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
..||++.|++.- + .-|-...+.+|+.+|+++|++|.+|=..
T Consensus 15 ~~~kvI~v~s~k-g---G~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 15 AEIKVLLITSVK-P---GEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CCCcEEEEecCC-C---CCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 347877777541 1 2355668899999999999999888654
No 232
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=49.04 E-value=3.5e+02 Score=28.59 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=66.7
Q ss_pred CCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC------------hhhHHHHHHHHHhCCCceEEEeecChH
Q 007300 399 NIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK------------KPMEKQLEQLEILYPEKARGVAKFNIP 466 (609)
Q Consensus 399 ~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~------------~~~~~~l~~l~~~~~~~v~~~~~~~~~ 466 (609)
+.++++.+|- ..-..-+.+++..+.+++..++++.-|.-+ ++-.+.+.+...+.+..+. ...++..
T Consensus 99 ~~~l~vIAGP-CsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~-tev~d~~ 176 (352)
T PRK13396 99 NHPVVVVAGP-CSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGII-TEVMDAA 176 (352)
T ss_pred CCeEEEEEeC-CcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEE-EeeCCHH
Confidence 3355666663 445666778888888876677777755421 2234455555666664332 3345666
Q ss_pred HHHHHHHhCcEEEecCCC-CCCcHHHHHHH-HcCCceEEcCC
Q 007300 467 LAHMIIAGADFILIPSRF-EPCGLIQLHAM-RYGTVPIVAST 506 (609)
Q Consensus 467 ~~~~~l~~aDv~v~pS~~-E~~gl~~lEAm-a~G~PvI~s~~ 506 (609)
.+..+...+|++-++|+. ..++ ++++. ..|+||+.+.-
T Consensus 177 ~v~~~~~~~d~lqIga~~~~n~~--LL~~va~t~kPVllk~G 216 (352)
T PRK13396 177 DLEKIAEVADVIQVGARNMQNFS--LLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHHhhCCeEEECcccccCHH--HHHHHHccCCeEEEeCC
Confidence 666666779999999984 4555 45554 67999998873
No 233
>PRK06487 glycerate dehydrogenase; Provisional
Probab=48.73 E-value=38 Score=35.16 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=51.1
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec------ChHHHHHHHHhCcEEEe--cCCCCC---CcHHHHHHHHc
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF------NIPLAHMIIAGADFILI--PSRFEP---CGLIQLHAMRY 497 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~------~~~~~~~~l~~aDv~v~--pS~~E~---~gl~~lEAma~ 497 (609)
+-.+-|+|-|. .-+.+.++...++-++..+-.. ....+.++++.||++++ |..-|+ ++-..+..|--
T Consensus 148 gktvgIiG~G~--IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ 225 (317)
T PRK06487 148 GKTLGLLGHGE--LGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225 (317)
T ss_pred CCEEEEECCCH--HHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC
Confidence 34556666655 4445555544454444433221 11235679999999876 444344 56669999999
Q ss_pred CCceEEcCCCCccc
Q 007300 498 GTVPIVASTGGLVD 511 (609)
Q Consensus 498 G~PvI~s~~gg~~e 511 (609)
|.-+|-+.-|++.|
T Consensus 226 ga~lIN~aRG~vVd 239 (317)
T PRK06487 226 GALLINTARGGLVD 239 (317)
T ss_pred CeEEEECCCccccC
Confidence 99999999888766
No 234
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.11 E-value=23 Score=35.22 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=27.7
Q ss_pred ceEEEEEeecCCccccchH--HHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGL--GDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~--~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||++.|.. + .||+ .+.+-+|+.+|++.|.+|.+|=..
T Consensus 1 M~~iai~s---~---kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVS---P---KGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEec---C---CCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 67666653 2 4554 567889999999999999888654
No 235
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.05 E-value=47 Score=33.30 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=30.1
Q ss_pred HHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCc
Q 007300 468 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL 509 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~ 509 (609)
+..++..+|+++.-+.-+...-.+..|+..|+|+|+..+|..
T Consensus 54 l~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s 95 (257)
T PRK00048 54 LEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFT 95 (257)
T ss_pred HHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 444667899998666544444457789999999998865543
No 236
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=47.00 E-value=57 Score=27.66 Aligned_cols=32 Identities=9% Similarity=0.248 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEE
Q 007300 428 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARG 459 (609)
Q Consensus 428 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~ 459 (609)
|+.+||++||..+.-.+...+++.++|+++..
T Consensus 63 P~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~a 94 (100)
T PF09949_consen 63 PERKFILIGDSGQHDPEIYAEIARRFPGRILA 94 (100)
T ss_pred CCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEE
Confidence 67799999997655677778889999987754
No 237
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=46.99 E-value=19 Score=36.25 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=26.6
Q ss_pred ceEEEEEeecCCccccchHH--HHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+|++.. .||+| +.+.+|+.+|+++|++|-+|=..
T Consensus 1 ~~i~~~g--------KGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYG--------KGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEc--------CCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 6666662 47776 45688999999999999888554
No 238
>COG1553 DsrE Uncharacterized conserved protein involved in intracellular sulfur reduction [Inorganic ion transport and metabolism]
Probab=46.12 E-value=37 Score=29.81 Aligned_cols=40 Identities=18% Similarity=0.092 Sum_probs=29.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCC-CeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vit~~ 127 (609)
||+.++... +|+ .--.......++.++.+.| ++|.++--.
T Consensus 1 m~~~Ivvt~-ppY--g~q~a~~A~~fA~all~~gh~~v~iFly~ 41 (126)
T COG1553 1 MKYTIVVTG-PPY--GTESAFSALRFAEALLEQGHELVRLFLYQ 41 (126)
T ss_pred CeEEEEEec-CCC--ccHHHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 788888876 675 2245667888999999996 668777654
No 239
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=44.88 E-value=22 Score=35.45 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=28.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
||||+.+..- =.+.-+..|.++|.+.| +|+|+.|..++
T Consensus 1 M~ILltNDDG-------i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 38 (244)
T TIGR00087 1 MKILLTNDDG-------IHSPGIRALYQALKELG-EVTVVAPARQR 38 (244)
T ss_pred CeEEEECCCC-------CCCHhHHHHHHHHHhCC-CEEEEeCCCCc
Confidence 8999888752 12223677889999998 99999998553
No 240
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=44.32 E-value=3.6e+02 Score=27.35 Aligned_cols=93 Identities=9% Similarity=-0.035 Sum_probs=45.3
Q ss_pred cCHHHHHHHHhhcccCCeEE-EEEeCCCh---hhHHHHHHHHHhCCCceEEEeecChHHHH----HHHHhCcEEEecCCC
Q 007300 413 KGSDILAAAIPHFIKENVQI-IVLGTGKK---PMEKQLEQLEILYPEKARGVAKFNIPLAH----MIIAGADFILIPSRF 484 (609)
Q Consensus 413 Kg~~~ll~a~~~l~~~~~~l-vivG~g~~---~~~~~l~~l~~~~~~~v~~~~~~~~~~~~----~~l~~aDv~v~pS~~ 484 (609)
.-+...++.++++...-=++ ++..+... ...+.+++...+++.++....--+.+++. .+-...|+++++...
T Consensus 115 ~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~ 194 (294)
T PF04392_consen 115 PPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDN 194 (294)
T ss_dssp --HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-H
T ss_pred cCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCc
Confidence 34445555555553211234 34444432 34566666677777555443333433333 344577887777532
Q ss_pred ---CCCcHHHHHHHHcCCceEEcC
Q 007300 485 ---EPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 485 ---E~~gl~~lEAma~G~PvI~s~ 505 (609)
..+...+..+..+++|+++++
T Consensus 195 ~~~~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 195 LVDSNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHTHHHHHHHCCCTT--EEESS
T ss_pred chHhHHHHHHHHHHhcCCCEEECC
Confidence 344445666778899999976
No 241
>PLN02928 oxidoreductase family protein
Probab=44.14 E-value=50 Score=34.82 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=34.5
Q ss_pred HHHHHHHHhCcEEEec--CCCCC---CcHHHHHHHHcCCceEEcCCCCccc
Q 007300 466 PLAHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 466 ~~~~~~l~~aDv~v~p--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
..+.++++.||++++. ..-|+ ++-..+..|--|..+|-+.-|++.|
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVd 268 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLD 268 (347)
T ss_pred cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccC
Confidence 3466799999998774 33344 4556889998999889888888665
No 242
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=43.96 E-value=73 Score=23.49 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=42.7
Q ss_pred eEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 430 VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 430 ~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
..|.+.|.-+......+.++...+++++.... -..++.+|.+..... ....+|...|+|+|..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~----------~~~~thvI~~~~~~~--~~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSV----------SKKTTHVIVGSDAGP--KKLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccc----------cCCceEEEECCCCCc--hHHHHHHHcCCeEecHH
Confidence 46778887534477888888888887554321 146777777754322 12778889999888654
No 243
>PRK09271 flavodoxin; Provisional
Probab=43.80 E-value=36 Score=31.34 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=30.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
|||+++-. +.+|....+...++..|...|++|.+.-.
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 78888764 24799999999999999999999876543
No 244
>PRK07236 hypothetical protein; Provisional
Probab=43.71 E-value=22 Score=37.86 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=28.7
Q ss_pred cCCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 81 ~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.|+.++|++|+.. .+|+. +|.+|++.|++|+|+=..
T Consensus 3 ~~~~~~ViIVGaG------~aGl~-----~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 3 HMSGPRAVVIGGS------LGGLF-----AALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCeEEEECCC------HHHHH-----HHHHHHhCCCCEEEEecC
Confidence 4778999999864 35666 888999999999998744
No 245
>PRK09739 hypothetical protein; Provisional
Probab=43.35 E-value=40 Score=32.23 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=30.5
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+.|||++|... |. ..|-...+...+.+++.+.||+|+++-..
T Consensus 1 ~~mmkiliI~~s--p~-~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 1 MQSMRIYLVWAH--PR-HDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred CCCceEEEEEcC--CC-CCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 345899999875 53 22334556667778888899999988754
No 246
>PRK13243 glyoxylate reductase; Reviewed
Probab=42.99 E-value=58 Score=34.11 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHhCcEEEecC--CCCC---CcHHHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILIPS--RFEP---CGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS--~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.++++.||++++.- .-|. ++-..+++|.-|.-+|-+..|++.+
T Consensus 198 l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd 246 (333)
T PRK13243 198 LEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVD 246 (333)
T ss_pred HHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcC
Confidence 456899999977643 3333 4456889999999999999888665
No 247
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.02 E-value=4.9e+02 Score=28.32 Aligned_cols=157 Identities=15% Similarity=0.107 Sum_probs=82.5
Q ss_pred HHHHHHHhhcccCCeEEEEEeCCC-----hhhHHHHHHHHHhC-CCceEEEeec----C-hHHHHHHHH--hCcEEEecC
Q 007300 416 DILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEILY-PEKARGVAKF----N-IPLAHMIIA--GADFILIPS 482 (609)
Q Consensus 416 ~~ll~a~~~l~~~~~~lvivG~g~-----~~~~~~l~~l~~~~-~~~v~~~~~~----~-~~~~~~~l~--~aDv~v~pS 482 (609)
....+++..+...+..+||+-+.. ..+.+++.++.... +..+.+...- + .+.+..+-. ..+-++++-
T Consensus 169 ~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTK 248 (429)
T TIGR01425 169 KIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITK 248 (429)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEEC
Confidence 344456666554456666664421 12334444443322 3333333321 1 112222222 245566665
Q ss_pred CCCC--CcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHH
Q 007300 483 RFEP--CGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMM 560 (609)
Q Consensus 483 ~~E~--~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~ 560 (609)
.-|. .|..+-=+...|+|+..-.+|--.+-++.-..-.+. -...--+|...|.+.+++.++. +..+++.
T Consensus 249 lD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~------~rilgmgDi~~L~ek~~~~~~~---~~~~~~~ 319 (429)
T TIGR01425 249 LDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFI------SKLLGMGDIEGLIDKVQDLKLD---DNEKALI 319 (429)
T ss_pred ccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHH------HHHhcCCCcHHHHHHHHHhhhH---HHHHHHH
Confidence 5443 566677778899999888776544333221000000 0012457888888888887664 3344555
Q ss_pred HHHHHhhCCchHHHHHHHHHH
Q 007300 561 KNGMAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 561 ~~~~~~~fs~~~~a~~~~~~~ 581 (609)
+..+...|+.+.+.+++..+-
T Consensus 320 ~k~~~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 320 EKLKEGTFTLRDMYEQFQNLL 340 (429)
T ss_pred HHHHhCCCCHHHHHHHHHHHH
Confidence 555567899999888887654
No 248
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=41.93 E-value=23 Score=36.73 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=30.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+|+-. |.....--.+.+..|..+.+++||+|.++.+.
T Consensus 1 m~~~~~~~---~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~ 40 (312)
T TIGR01380 1 LKVAFQMD---PIESINIGKDTTFALMEEAQKRGHELFFYEPG 40 (312)
T ss_pred CeEEEEeC---CHHHCCCCcChHHHHHHHHHHcCCEEEEEehh
Confidence 89999985 32222223445777999999999999999987
No 249
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=41.91 E-value=28 Score=34.30 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=28.1
Q ss_pred ceEEEEEeecCCccccchHHHH--hhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDV--LGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~--~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+-|.+. .||+|.- ..+|+.+|+++|++|.++=.+
T Consensus 1 M~iI~v~n~------KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 1 MKLLTFCSF------KGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred CeEEEEECC------CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 666656543 6877755 567999999999999888765
No 250
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=41.74 E-value=29 Score=33.83 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=23.7
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||.||. |.|.+-..|+..|++.||+|+++...
T Consensus 1 MkI~IIG----------G~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLG----------GTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEc----------CCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 6777763 33444456889999999999887544
No 251
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=41.08 E-value=73 Score=33.25 Aligned_cols=44 Identities=32% Similarity=0.477 Sum_probs=35.5
Q ss_pred HHHHHHhCcEEEe--cCCCCCCcH---HHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILI--PSRFEPCGL---IQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~--pS~~E~~gl---~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.++++.||++++ |...|+..+ ..++.|--|.-+|-+.-|++.|
T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VD 242 (324)
T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVD 242 (324)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 5578999999766 666676555 5999999999999999998766
No 252
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=41.01 E-value=3.2e+02 Score=25.91 Aligned_cols=110 Identities=9% Similarity=0.073 Sum_probs=64.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec-ChHHHHHHHH--hCcEEEecCCCCC----CcHHHHHHHH---cC
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAHMIIA--GADFILIPSRFEP----CGLIQLHAMR---YG 498 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~~~l~--~aDv~v~pS~~E~----~gl~~lEAma---~G 498 (609)
+++++|+.+.+ .....+..+....+. +.....+ +.......+. ..|++++-....+ .|+.+++.+. ..
T Consensus 3 ~~~Ilivdd~~-~~~~~l~~~L~~~~~-~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHP-IVLFGIRKSLEQIEW-VNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcH-HHHHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 35677777654 244445554444332 2222222 3333333333 4799888655433 5777777764 34
Q ss_pred CceEEcC-CCC---cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 499 TVPIVAS-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 499 ~PvI~s~-~gg---~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
+|+|+-. ... ..+.++.|..||+. .+.+++++.++|..++..
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~----------K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVL----------KQGAPTDLPKALAALQKG 126 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEE----------CCCCHHHHHHHHHHHHCC
Confidence 5665443 222 22446678899987 888999999999988764
No 253
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=40.69 E-value=31 Score=35.60 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=25.9
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.|||++++ .|++|.++ +-.|++.|++|+++...
T Consensus 2 ~m~I~IiG--------aGaiG~~~---a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILG--------AGSLGSLW---ACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEEC--------CCHHHHHH---HHHHHhCCCCeEEEEec
Confidence 68999998 37777664 44578899999999875
No 254
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=40.41 E-value=70 Score=33.33 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=33.9
Q ss_pred HHHHHHhCcEEEe--cCCCCC---CcHHHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~--pS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.++++.||++++ |..-|. ++-..++.|--|.-+|-+.-|++.|
T Consensus 194 l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 242 (323)
T PRK15409 194 LDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVD 242 (323)
T ss_pred HHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccC
Confidence 4568999999776 444344 4556999999999999999888765
No 255
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=40.08 E-value=30 Score=34.64 Aligned_cols=28 Identities=36% Similarity=0.587 Sum_probs=22.5
Q ss_pred cchHH--HHhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~--~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+| +.+.+||.+|+++|++|-+|=..
T Consensus 9 KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 9 KGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 36665 45688999999999999888655
No 256
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=39.86 E-value=30 Score=37.37 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=29.5
Q ss_pred CCceEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.+|+|+-|.+. .||+|. .+.+|+.+|+.+|++|-+|=..
T Consensus 119 ~~~~vIav~n~------KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 119 EHLQVIAVTNF------KGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CCceEEEEEcC------CCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 46787777654 577665 5678999999999999887544
No 257
>PRK07454 short chain dehydrogenase; Provisional
Probab=39.54 E-value=35 Score=33.26 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=25.0
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
..||.++|+.- .||+| ..+++.|.++|++|.++...
T Consensus 4 ~~~k~vlItG~------sg~iG---~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 4 NSMPRALITGA------SSGIG---KATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCCEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeCC
Confidence 45777777632 35554 55788899999999887754
No 258
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=38.74 E-value=33 Score=36.67 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=30.1
Q ss_pred CCCceEEEEEeecCCccccchHH--HHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.++|+|+.|++. .||+| +...+||.+|+.+|++|.+|=..
T Consensus 101 g~~~~vI~v~n~------KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 101 GEHLQVIAVTNF------KGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCCceEEEEEcc------CCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 356887777754 46665 45678999999999999888655
No 259
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=38.71 E-value=41 Score=29.72 Aligned_cols=36 Identities=19% Similarity=0.035 Sum_probs=25.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++.... ++......++.+.|.+.|++|.++...
T Consensus 1 k~i~l~vtG-------s~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTG-------SIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-S-------SGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEEC-------HHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 688877753 222333778999999999999988765
No 260
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=38.68 E-value=1.1e+02 Score=30.49 Aligned_cols=99 Identities=16% Similarity=0.185 Sum_probs=61.7
Q ss_pred cCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEE--EeecChHHHHH-----HHHhCcEEEecC---
Q 007300 413 KGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARG--VAKFNIPLAHM-----IIAGADFILIPS--- 482 (609)
Q Consensus 413 Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~--~~~~~~~~~~~-----~l~~aDv~v~pS--- 482 (609)
-|.|++.+.++...+.+.++.++|+.++..++..+.+..+++.++.+ .+.|+.++... --+++|++++--
T Consensus 89 ~G~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 89 AGADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred ChHHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 38899999888876667899999988877777788887777545543 23343332221 235789888743
Q ss_pred CCCCCcHHHHHHHHcCCceEEcCCCCcccccc
Q 007300 483 RFEPCGLIQLHAMRYGTVPIVASTGGLVDTVE 514 (609)
Q Consensus 483 ~~E~~gl~~lEAma~G~PvI~s~~gg~~e~i~ 514 (609)
+.|-|-....+- .+.+++ -.+||.-|+..
T Consensus 169 kQE~~~~~~~~~--~~~~v~-~gvGg~fD~~a 197 (243)
T PRK03692 169 KQEIFMRDCRLV--YPDALY-MGVGGTYDVFT 197 (243)
T ss_pred HHHHHHHHHHHh--CCCCEE-EEeCeEEEEec
Confidence 335553332222 244443 34677777654
No 261
>PRK06756 flavodoxin; Provisional
Probab=38.60 E-value=48 Score=29.91 Aligned_cols=38 Identities=5% Similarity=0.142 Sum_probs=31.0
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++|-.. .+|..+.+...++..|.+.|++|.++-..
T Consensus 2 mkv~IiY~S-----~tGnTe~vA~~ia~~l~~~g~~v~~~~~~ 39 (148)
T PRK06756 2 SKLVMIFAS-----MSGNTEEMADHIAGVIRETENEIEVIDIM 39 (148)
T ss_pred ceEEEEEEC-----CCchHHHHHHHHHHHHhhcCCeEEEeehh
Confidence 688877642 37999999999999999999999877543
No 262
>PLN02306 hydroxypyruvate reductase
Probab=38.55 E-value=71 Score=34.19 Aligned_cols=45 Identities=24% Similarity=0.247 Sum_probs=35.2
Q ss_pred HHHHHHHhCcEEEe--cCCCCCCcH---HHHHHHHcCCceEEcCCCCccc
Q 007300 467 LAHMIIAGADFILI--PSRFEPCGL---IQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 467 ~~~~~l~~aDv~v~--pS~~E~~gl---~~lEAma~G~PvI~s~~gg~~e 511 (609)
.+.++++.||++++ |..-|+.++ ..++.|--|.-+|-+.-|++.|
T Consensus 229 ~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVD 278 (386)
T PLN02306 229 SMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVID 278 (386)
T ss_pred CHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccC
Confidence 46679999999876 444465544 5999999999999999988776
No 263
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=38.47 E-value=78 Score=33.79 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=50.5
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec--------ChHHHHHHHHhCcEEE--ecCCCC----CC---cHHH
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--------NIPLAHMIIAGADFIL--IPSRFE----PC---GLIQ 491 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~--------~~~~~~~~l~~aDv~v--~pS~~E----~~---gl~~ 491 (609)
+-++-|+|-|. .-+.+.+....++-++..+-.. ....+.++++.||+++ .|...+ +. +-..
T Consensus 116 gktvGIIG~G~--IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 116 DRTVGIVGVGN--VGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred CCEEEEECcCH--HHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 44566666665 4445544444454444333211 1123557899999988 565443 44 4468
Q ss_pred HHHHHcCCceEEcCCCCccc
Q 007300 492 LHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 492 lEAma~G~PvI~s~~gg~~e 511 (609)
+++|.-|.-+|-+.-|++.|
T Consensus 194 l~~mk~gailIN~aRG~vVD 213 (378)
T PRK15438 194 IRSLKPGAILINACRGAVVD 213 (378)
T ss_pred HhcCCCCcEEEECCCchhcC
Confidence 99999999999999888665
No 264
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=38.40 E-value=30 Score=34.61 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=27.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
||||+.+..-.. .-| +..|+++|.+ +|+|+|++|..++
T Consensus 1 M~ILvtNDDGi~---apG----l~aL~~~l~~-~~~V~VvAP~~~~ 38 (253)
T PRK13933 1 MNILLTNDDGIN---AEG----INTLAELLSK-YHEVIIVAPENQR 38 (253)
T ss_pred CeEEEEcCCCCC---Chh----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 899999887322 223 6678888865 6899999998554
No 265
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=37.89 E-value=3e+02 Score=25.77 Aligned_cols=27 Identities=41% Similarity=0.674 Sum_probs=20.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCe
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHR 120 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~ 120 (609)
|||+|+.+. .+.....+..++.+.+++
T Consensus 1 mrI~~~~Sg---------~~~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSG---------SGSFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESS---------SSHHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcC---------CCHHHHHHHHHHHhCCCC
Confidence 899999753 124667778899999998
No 266
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.89 E-value=37 Score=35.04 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.++|||.|+.. |- +-..++..|++.||+|+++...
T Consensus 2 ~~~m~I~iiG~--------G~---~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGA--------GA---WGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECc--------cH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 35799999874 22 2344888999999999877754
No 267
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=37.62 E-value=43 Score=30.90 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=31.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||+|++-+. ..|-.......++..|...||+|++.-..
T Consensus 1 Mk~LIlYst-----r~GqT~kIA~~iA~~L~e~g~qvdi~dl~ 38 (175)
T COG4635 1 MKTLILYST-----RDGQTRKIAEYIASHLRESGIQVDIQDLH 38 (175)
T ss_pred CceEEEEec-----CCCcHHHHHHHHHHHhhhcCCeeeeeehh
Confidence 788888652 46888999999999999999999987654
No 268
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.60 E-value=25 Score=33.97 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=32.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~ 129 (609)
|.+++++. +| ..|-.++..+|+++|.+++|+|..++..|.
T Consensus 1 mpLiIlTG--yP---gsGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 1 MPLIILTG--YP---GSGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred CceEEEec--CC---CCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 55666665 36 578889999999999999999999887643
No 269
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.24 E-value=3.4e+02 Score=26.18 Aligned_cols=70 Identities=13% Similarity=0.129 Sum_probs=43.2
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec-ChHHHH-HHHHhCcEEEecCC
Q 007300 414 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSR 483 (609)
Q Consensus 414 g~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~-~~l~~aDv~v~pS~ 483 (609)
..+..++.++.+.+..++.+=+--..+...+.++++..++++-+.+-+.. +.+++. .+-++|++++.|..
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~ 85 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGT 85 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCC
Confidence 55666666666666444433222223335677788887777655666655 555554 36678899988875
No 270
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=36.86 E-value=5.9e+02 Score=27.72 Aligned_cols=82 Identities=7% Similarity=0.053 Sum_probs=48.6
Q ss_pred CcHHHHHHHHcCCceEEcCCCCccccccc----CcceeEecccccccccCCCCCHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 007300 487 CGLIQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 562 (609)
Q Consensus 487 ~gl~~lEAma~G~PvI~s~~gg~~e~i~~----~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~~~~~~~~~~~~~ 562 (609)
.|.++-=+...|+|+....+|--.+-++. .-...++ .-+|+..|.+.+++.++. +...++.+.
T Consensus 255 ~G~~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iL----------g~gD~~~l~e~~~~~~~~---~~~~~~~~~ 321 (428)
T TIGR00959 255 GGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRIL----------GMGDILSLVEKAQEVVDE---EEAKKLAEK 321 (428)
T ss_pred ccHHHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHh----------CCCChHHHHHHHHHhhCH---HHHHHHHHH
Confidence 56555556678999988777643332221 0111111 456666777776666543 233444444
Q ss_pred HHHhhCCchHHHHHHHHHH
Q 007300 563 GMAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 563 ~~~~~fs~~~~a~~~~~~~ 581 (609)
.+...|+.+.+.+++..+-
T Consensus 322 ~~~~~f~l~d~~~q~~~~~ 340 (428)
T TIGR00959 322 MKKGQFDLEDFLEQLRQIK 340 (428)
T ss_pred HHhCCCCHHHHHHHHHHHH
Confidence 4556799999888887654
No 271
>TIGR03012 sulf_tusD_dsrE sulfur relay protein TusD/DsrE. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=36.77 E-value=55 Score=28.97 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.2
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeE-EEEeec
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRV-MTIAPR 127 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V-~vit~~ 127 (609)
|++++... +|+ .+-.+.-..+++.++.+.||+| .|+--.
T Consensus 1 ~~~iv~~~-~P~--~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 40 (127)
T TIGR03012 1 KYTLLVTG-PPY--GTQAASSAYQFAQALLAKGHEIVRVFFYQ 40 (127)
T ss_pred CEEEEEeC-CCC--CcHHHHHHHHHHHHHHHCCCcEEEEEEeh
Confidence 46666665 676 4456677888999999999995 666543
No 272
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=36.60 E-value=36 Score=34.17 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=22.3
Q ss_pred cchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+|. .+.+||.+|+++|++|-+|=..
T Consensus 10 KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 10 KGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 466664 5688999999999999888654
No 273
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=36.57 E-value=39 Score=35.85 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
++|||++. ||.|.+=..|++.|.++||+|..+...
T Consensus 20 ~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICIT----------GAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 57898865 555556677999999999999888743
No 274
>PRK05920 aromatic acid decarboxylase; Validated
Probab=36.49 E-value=58 Score=31.49 Aligned_cols=37 Identities=16% Similarity=-0.049 Sum_probs=27.8
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+|||++-... +........+.+.|.+.|++|.++...
T Consensus 3 ~krIllgITG-------siaa~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 3 MKRIVLAITG-------ASGAIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCEEEEEEeC-------HHHHHHHHHHHHHHHHCCCEEEEEECh
Confidence 5788776642 223356778999999999999999876
No 275
>PRK05866 short chain dehydrogenase; Provisional
Probab=36.28 E-value=54 Score=33.42 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=25.8
Q ss_pred cccCCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 79 IVCGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 79 ~~~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
..++++++|++++. .||+| ..+++.|+++|++|.++..+
T Consensus 35 ~~~~~~k~vlItGa-------sggIG---~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGA-------SSGIG---EAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCC-------CcHHH---HHHHHHHHHCCCEEEEEECC
Confidence 34455655555443 36666 45778889999999877654
No 276
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=36.23 E-value=2.5e+02 Score=26.96 Aligned_cols=68 Identities=21% Similarity=0.284 Sum_probs=40.0
Q ss_pred HHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec-ChHHHH-HHHHhCcEEEecCC
Q 007300 416 DILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSR 483 (609)
Q Consensus 416 ~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~-~~l~~aDv~v~pS~ 483 (609)
+..++.++.|.+..++++=+--..+...+.++.+..++++-+.+-+.. +.+++. .+-++|++++.|..
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~~ 89 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPGF 89 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS-
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCCC
Confidence 444555555544466655444333446677888888888766777665 555554 46788999999975
No 277
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=36.17 E-value=34 Score=34.23 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=27.0
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
||||+.+..-.- .-| +..|.++|++ +|+|+|++|..++
T Consensus 1 M~ILlTNDDGi~---a~G----i~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGIT---SPG----IIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCCC---CHH----HHHHHHHHHh-CCcEEEEccCCCC
Confidence 899998876211 223 5667788865 5799999998654
No 278
>PRK13671 hypothetical protein; Provisional
Probab=36.13 E-value=1.2e+02 Score=31.19 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=25.4
Q ss_pred EEEEEecccc-ccCHHHHHHHHhhcccCC-eEEEEEeCC
Q 007300 402 VIGFIGRLEE-QKGSDILAAAIPHFIKEN-VQIIVLGTG 438 (609)
Q Consensus 402 ~i~~iGrl~~-~Kg~~~ll~a~~~l~~~~-~~lvivG~g 438 (609)
+++.|..++| +.|+..+++.+.+....+ +-++..|+.
T Consensus 2 ~~GIIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~ 40 (298)
T PRK13671 2 AIGIIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY 40 (298)
T ss_pred ceeEEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC
Confidence 4577778886 789999999988865544 444445543
No 279
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=35.71 E-value=73 Score=30.40 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=23.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCC--eEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH--RVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh--~V~vit~~ 127 (609)
|||+++.+ |.|.....+..++.+.++ +|.++.+.
T Consensus 1 ~riail~s---------g~gs~~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLIS---------GNGSNLQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEc---------CCChhHHHHHHHHHcCCCCceEEEEEEC
Confidence 68888874 335567788888888776 55555555
No 280
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=35.53 E-value=39 Score=33.72 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=23.4
Q ss_pred eEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 86 NILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+|..|.++ .||+|. +..+||-+|+++|++|-++=..
T Consensus 1 HiIvV~sg------KGGvGKSTva~~lA~aLa~~G~kVg~lD~D 38 (261)
T PF09140_consen 1 HIIVVGSG------KGGVGKSTVAVNLAVALARMGKKVGLLDLD 38 (261)
T ss_dssp EEEEEE-S------STTTTHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred CEEEEecC------CCCCcHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 35556654 577765 5567999999999999998755
No 281
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=35.18 E-value=6.2e+02 Score=27.87 Aligned_cols=107 Identities=23% Similarity=0.253 Sum_probs=68.7
Q ss_pred EEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHh--CcEEEecCCC-CCCcHHHHHHHHc---CCceEEc
Q 007300 431 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAG--ADFILIPSRF-EPCGLIQLHAMRY---GTVPIVA 504 (609)
Q Consensus 431 ~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~--aDv~v~pS~~-E~~gl~~lEAma~---G~PvI~s 504 (609)
+++++-+.. .....+.+.-...+-.+.. .-+...+...+.. .|+++.-.+. +.-|+.+++.+.. ++|||.-
T Consensus 6 ~iLvVDDd~-~ir~~l~~~L~~~G~~v~~--a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 6 RILVVDDDP-DIRELLEQALELAGYEVVT--AESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CEEEEeCCH-HHHHHHHHHHHHcCCeEEE--eCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 356666543 3555555555554433332 2344444444544 4666665555 6678888887766 6888665
Q ss_pred C-CCC---cccccccCcceeEecccccccccCCCCCHHHHHHHHHHHHHh
Q 007300 505 S-TGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALAT 550 (609)
Q Consensus 505 ~-~gg---~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ll~~ 550 (609)
. .|. .++-++.|..-|+. -|-|++.+...|.++++.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~----------KP~~~~~L~~~v~ral~~ 122 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLE----------KPFDLDRLLAIVERALEL 122 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeee----------CCCCHHHHHHHHHHHHHH
Confidence 4 454 44556677777876 899999999999999986
No 282
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=35.08 E-value=35 Score=34.41 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=22.6
Q ss_pred cchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+|. .+.+|+.+|+++|++|.++=..
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVllvD~D 38 (273)
T PRK13232 9 KGGIGKSTTTQNLTAALSTMGNKILLVGCD 38 (273)
T ss_pred CCCCcHHHHHHHHHHHHHhhCCCeEEEecc
Confidence 477765 4578999999999999988544
No 283
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=35.01 E-value=4.6e+02 Score=26.12 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=58.5
Q ss_pred EeccccccCHHHHHHHHhhccc-CCeEEEEEeCCC---hhhHHHHHHHHHhCCCc-eEEEeecC-----hHHHHHHHHhC
Q 007300 406 IGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK---KPMEKQLEQLEILYPEK-ARGVAKFN-----IPLAHMIIAGA 475 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~---~~~~~~l~~l~~~~~~~-v~~~~~~~-----~~~~~~~l~~a 475 (609)
+|.-+...+-..+.+.+-++.. ++.+++++.+.. ..+.+...+...+++-+ +..+.-.+ .+.....+..|
T Consensus 4 iGG~~~~~~~~~i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~a 83 (250)
T TIGR02069 4 IGGAEDKVGDREILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNA 83 (250)
T ss_pred EeCccccCChHHHHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhC
Confidence 3443333344445555554443 567888876532 23334444444445532 33222222 23344678999
Q ss_pred cEEEecC--------CCCCCcH--HHHHHHHcCCceEEcCCCCc
Q 007300 476 DFILIPS--------RFEPCGL--IQLHAMRYGTVPIVASTGGL 509 (609)
Q Consensus 476 Dv~v~pS--------~~E~~gl--~~lEAma~G~PvI~s~~gg~ 509 (609)
|++++.- .+...++ .+-++...|+|++.++.|..
T Consensus 84 d~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 84 TGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred CEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHH
Confidence 9998863 2344554 46688889999999987764
No 284
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=34.86 E-value=37 Score=33.90 Aligned_cols=38 Identities=29% Similarity=0.459 Sum_probs=28.1
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
||||+-+..- .+ .-| +.-|+++|. .+++|+|++|..++
T Consensus 1 mrILlTNDDG-i~--a~G----i~aL~~al~-~~~dV~VVAP~~~q 38 (252)
T COG0496 1 MRILLTNDDG-IH--APG----IRALARALR-EGADVTVVAPDREQ 38 (252)
T ss_pred CeEEEecCCc-cC--CHH----HHHHHHHHh-hCCCEEEEccCCCC
Confidence 8999988762 21 223 556888888 89999999998654
No 285
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.45 E-value=3.1e+02 Score=26.70 Aligned_cols=88 Identities=15% Similarity=0.095 Sum_probs=51.4
Q ss_pred ccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec-ChHHHH-HHHHhCcEEEecCCCCCCcH
Q 007300 412 QKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSRFEPCGL 489 (609)
Q Consensus 412 ~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~-~~l~~aDv~v~pS~~E~~gl 489 (609)
....+..++.++.+.+..++++=++-..+.-.+.++++..++++.+.+-+.. +.+++. .+-++||+++.|...+ -
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~---~ 99 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTP---P 99 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCH---H
Confidence 3455666666666665445544444333446677888888888655555554 444444 3667889998887532 2
Q ss_pred HHHHHHHcCCceE
Q 007300 490 IQLHAMRYGTVPI 502 (609)
Q Consensus 490 ~~lEAma~G~PvI 502 (609)
++-.+..+|+|.+
T Consensus 100 vi~~a~~~~i~~i 112 (212)
T PRK05718 100 LLKAAQEGPIPLI 112 (212)
T ss_pred HHHHHHHcCCCEe
Confidence 2223344454444
No 286
>PRK12827 short chain dehydrogenase; Provisional
Probab=34.41 E-value=50 Score=32.13 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=25.2
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
+++|+|+++.. .||+| ..+++.|+++||+|.++..
T Consensus 4 ~~~~~ilItGa-------sg~iG---~~la~~l~~~g~~v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGG-------SGGLG---RAIAVRLAADGADVIVLDI 38 (249)
T ss_pred cCCCEEEEECC-------CChHH---HHHHHHHHHCCCeEEEEcC
Confidence 44677766553 36666 4688999999999987764
No 287
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=34.40 E-value=91 Score=32.59 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHhCcEEEe--cCCCCC---CcHHHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~--pS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+..+++.||++++ |...+. ++-..++.|.-|..+|.+.-|++.|
T Consensus 192 l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd 240 (330)
T PRK12480 192 VKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVIN 240 (330)
T ss_pred HHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccC
Confidence 4568999998766 433333 3445778888899999998888665
No 288
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=34.22 E-value=4.1e+02 Score=25.64 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=44.1
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec-ChHHHH-HHHHhCcEEEecCC
Q 007300 414 GSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF-NIPLAH-MIIAGADFILIPSR 483 (609)
Q Consensus 414 g~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~-~~~~~~-~~l~~aDv~v~pS~ 483 (609)
..+..++.++.+.+..++++=+--..+.-.+.++++..++++-+.+-+.. +.+++. .+-++|++++.|..
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCC
Confidence 55666666666666455544333333445667888887787655666655 555554 35688899988875
No 289
>PRK05246 glutathione synthetase; Provisional
Probab=34.05 E-value=35 Score=35.36 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=30.7
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+|+-. |.....--...+..|+++..++||+|.++++.
T Consensus 2 ~~~~~~~~---~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~ 41 (316)
T PRK05246 2 MKVAFQMD---PIESINIKKDSTFAMMLEAQRRGHELFYYEPD 41 (316)
T ss_pred ceEEEEeC---CHHHCCCCCChHHHHHHHHHHcCCEEEEEehh
Confidence 89999985 33333333445667999999999999999987
No 290
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.00 E-value=42 Score=32.99 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=26.9
Q ss_pred ceEEEEEeecCCccccchHH--HHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+-|.+. .||.| +...+|+.+|+++|++|-+|=..
T Consensus 1 m~iI~v~s~------KGGvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 1 MKVIAIVGV------KGGVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CcEEEEEeC------CCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 665555432 35554 56778999999999999888765
No 291
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=33.94 E-value=2.4e+02 Score=28.45 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=59.5
Q ss_pred HHHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhccc-CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecC
Q 007300 386 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN 464 (609)
Q Consensus 386 ~~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~ 464 (609)
+++.+++|-. ...-+.|.-++ ....+..+.-+..|.. ++++.+|+-.+.+.....+++...+.|+ +..+....
T Consensus 23 e~l~~~Yg~~---~I~h~tyPdnf--~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpD-Il~ia~~~ 96 (275)
T PF12683_consen 23 EELIKKYGDV---MIKHVTYPDNF--MSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPD-ILLIAGEP 96 (275)
T ss_dssp HHHHHHHHHH---EEEEEE--TTG--GGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TT-SEEEESS-
T ss_pred HHHHHHhCcc---eEEEEeCCCcc--cchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCC-eEEEcCCC
Confidence 4555666621 11223344333 4458888888888876 8999999988877788889999888887 55556666
Q ss_pred hHHHHHHHHhCcEEEecCCCCCCcHH
Q 007300 465 IPLAHMIIAGADFILIPSRFEPCGLI 490 (609)
Q Consensus 465 ~~~~~~~l~~aDv~v~pS~~E~~gl~ 490 (609)
.++...+-+.+|+.+.+.. ...|-.
T Consensus 97 ~EDp~~i~~~aDi~~~~D~-~~~G~~ 121 (275)
T PF12683_consen 97 HEDPEVISSAADIVVNPDE-ISRGYT 121 (275)
T ss_dssp -S-HHHHHHHSSEEEE--H-HHHHHH
T ss_pred cCCHHHHhhccCeEeccch-hhccHH
Confidence 6667678899999998653 334443
No 292
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=33.42 E-value=42 Score=33.59 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.2
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
||||+.+..-.- +.-+..|.++|.+. |+|+|++|..++
T Consensus 1 M~ILlTNDDGi~-------a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGIH-------APGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCCC-------ChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 899998876211 12266788899888 799999998554
No 293
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=33.30 E-value=41 Score=33.88 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=27.7
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
||||+.+..-.- .-| +..|.++|.+.| +|+|++|..++
T Consensus 1 M~ILlTNDDGi~---apG----i~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGVH---SPG----LRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCCC---CHH----HHHHHHHHHhCC-cEEEEccCCCC
Confidence 899998876321 223 666888888887 89999998554
No 294
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=33.28 E-value=2.7e+02 Score=25.90 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=45.2
Q ss_pred HHHHHHHhhccc--CCeEEEEEeCCChhh-HHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHH
Q 007300 416 DILAAAIPHFIK--ENVQIIVLGTGKKPM-EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 492 (609)
Q Consensus 416 ~~ll~a~~~l~~--~~~~lvivG~g~~~~-~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~l 492 (609)
...++.++++.. .+-+++|+|.|. + ...+..+..+.+.++.... ...+.+...+..||+++...-... +.--
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~--~~G~~~a~~L~~~g~~V~v~~-r~~~~l~~~l~~aDiVIsat~~~~--ii~~ 103 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSN--IVGKPLAALLLNRNATVTVCH-SKTKNLKEHTKQADIVIVAVGKPG--LVKG 103 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcH--HHHHHHHHHHhhCCCEEEEEE-CCchhHHHHHhhCCEEEEcCCCCc--eecH
Confidence 345555555532 578899999986 3 3323333333443444333 334556679999999999876533 3333
Q ss_pred HHHHcCC
Q 007300 493 HAMRYGT 499 (609)
Q Consensus 493 EAma~G~ 499 (609)
|.+.-|+
T Consensus 104 ~~~~~~~ 110 (168)
T cd01080 104 DMVKPGA 110 (168)
T ss_pred HHccCCe
Confidence 4443343
No 295
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=33.09 E-value=52 Score=31.81 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=24.0
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+.|+|++.+. .||+| ..+++.|.++||+|.++...
T Consensus 3 ~~~~~ilItGa-------sg~iG---~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGA-------SRGIG---RAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CCCCEEEEECC-------CcHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 34456665553 35655 45788889999998776654
No 296
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=33.09 E-value=1.9e+02 Score=24.43 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=46.1
Q ss_pred EEEEeCCC--hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCC-CCCcHHHHHHHHcCCceEEcC
Q 007300 432 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRF-EPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 432 lvivG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~-E~~gl~~lEAma~G~PvI~s~ 505 (609)
++++|.|. .-..+.++++..+.+..+.. ..............+|++++.... --+.-.--.+-..|+||.+-+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i-~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEA-AAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEE-EEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 46677774 34677888888887754443 345556666788999998887652 112222223445688887766
No 297
>CHL00194 ycf39 Ycf39; Provisional
Probab=32.93 E-value=41 Score=34.68 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=20.6
Q ss_pred chHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 101 GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||.|..=..++++|.++||+|.+++..
T Consensus 7 GatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 7 GATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 444545556888999999999999854
No 298
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=32.91 E-value=59 Score=33.23 Aligned_cols=44 Identities=11% Similarity=-0.052 Sum_probs=30.9
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|++|||++++....|. ..=.-.....+.++|.++||+|.++-+.
T Consensus 2 ~~~~~v~~~~g~~~~~--~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 2 KMFGKVAVLMGGTSAE--REVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CCCcEEEEEeCCCCCC--ceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 4567999998655453 1111224477999999999999998755
No 299
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.87 E-value=6.8e+02 Score=27.26 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=93.5
Q ss_pred EEeccccccCHHHHHHHHhhcccCCeEEEEEeC-C----ChhhHHHHHHHHHh-CCCceEEEeec-ChH----HHHHHHH
Q 007300 405 FIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT-G----KKPMEKQLEQLEIL-YPEKARGVAKF-NIP----LAHMIIA 473 (609)
Q Consensus 405 ~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~-g----~~~~~~~l~~l~~~-~~~~v~~~~~~-~~~----~~~~~l~ 473 (609)
|.+.-...+=+++.-++++.++...+.++|+-+ | ++.+.+++.++... .|+.+.+.+.- .++ .+..+-.
T Consensus 158 ~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e 237 (451)
T COG0541 158 FFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE 237 (451)
T ss_pred eecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence 444433444566778888888777677888765 2 24566666666655 35556655543 222 2333444
Q ss_pred hCcE-EEecCCCC--CCcH-HHHHHHHcCCceEEcCCCCccccccc----CcceeEecccccccccCCCCCHHHHHHHHH
Q 007300 474 GADF-ILIPSRFE--PCGL-IQLHAMRYGTVPIVASTGGLVDTVEE----GFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 545 (609)
Q Consensus 474 ~aDv-~v~pS~~E--~~gl-~~lEAma~G~PvI~s~~gg~~e~i~~----~~~G~l~~~~~~~~~~v~~~d~~~la~~I~ 545 (609)
+.++ .++-+..+ +-|- ++-=.-..|+|+---.+|--.+-++. .-..- ..--+|+..|.+.++
T Consensus 238 ~l~itGvIlTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asR----------ILGMGDv~sLvEk~~ 307 (451)
T COG0541 238 ALGITGVILTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASR----------ILGMGDVLSLIEKAE 307 (451)
T ss_pred hcCCceEEEEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHH----------hcCcccHHHHHHHHH
Confidence 4444 23333443 3333 33334567999866655543222221 10111 113467777777777
Q ss_pred HHHHhhCHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q 007300 546 RALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETL 581 (609)
Q Consensus 546 ~ll~~~~~~~~~~~~~~~~~~~fs~~~~a~~~~~~~ 581 (609)
+.++ .+..+++.+.-..-.|+.+.+.+++.++-
T Consensus 308 ~~~d---~e~a~~~~~kl~~g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 308 EVVD---EEEAEKLAEKLKKGKFTLEDFLEQLEQMK 340 (451)
T ss_pred Hhhh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7776 34555666666677899999999987753
No 300
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=32.80 E-value=1.5e+02 Score=31.77 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHhhCHHHHHHHHHHH---HHhhCCchHHHHHHHHHHHHHHH
Q 007300 535 VDVAAVSTTVRRALATYGTQALAEMMKNG---MAQDLSWKGPAKKWEETLLNLEV 586 (609)
Q Consensus 535 ~d~~~la~~I~~ll~~~~~~~~~~~~~~~---~~~~fs~~~~a~~~~~~~~~l~~ 586 (609)
+|-.+|.++|+.+.++ ++..+++++++ +.+.++.+.+..-|..++.+...
T Consensus 268 ~d~sdL~~~v~w~~~~--~~~A~~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eYa~ 320 (395)
T PF05686_consen 268 DDLSDLEEKVEWLNAH--DDEAQRIAENGQRFAREYLTMEDVYCYWRRLLLEYAK 320 (395)
T ss_pred cchhhHHHHhhhcccC--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5789999999988876 55555555554 56889999988888777766554
No 301
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.47 E-value=44 Score=33.68 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=22.9
Q ss_pred cchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+|. .+.+|+.+|+++|++|.+|=..
T Consensus 9 KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 477775 5678999999999999888654
No 302
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=32.37 E-value=48 Score=35.55 Aligned_cols=39 Identities=28% Similarity=0.269 Sum_probs=28.8
Q ss_pred CCCceEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEee
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit~ 126 (609)
.++++|+-|.+. .||+|. .+.+|+.+|+.+|++|-+|=.
T Consensus 103 ~~~~~vIav~n~------KGGVGKTTta~nLA~~LA~~G~rVLlIDl 143 (387)
T PHA02519 103 DKNPVVLAVMSH------KGGVYKTSSAVHTAQWLALQGHRVLLIEG 143 (387)
T ss_pred CCCceEEEEecC------CCCCcHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 345677666643 577765 567899999999999988753
No 303
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=32.20 E-value=61 Score=32.72 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=27.2
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCC
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~ 129 (609)
.|+-++|+.- ++|+| .++++.|+++||+|.++..+.+
T Consensus 5 ~~~~~lITGA------SsGIG---~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 5 KGKTALITGA------SSGIG---AELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CCcEEEEECC------CchHH---HHHHHHHHHCCCEEEEEeCcHH
Confidence 3455555532 57777 4689999999999999997755
No 304
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=32.11 E-value=57 Score=30.95 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=21.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++++..| =|+. +|..|++.||+|..+=.+
T Consensus 1 M~I~ViGlGy------vGl~-----~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGY------VGLP-----LAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE--ST------THHH-----HHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECCCc------chHH-----HHHHHHhCCCEEEEEeCC
Confidence 8999998653 2444 888999999999887654
No 305
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=32.05 E-value=76 Score=30.56 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=23.2
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCC--CeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG--HRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~G--h~V~vit~~ 127 (609)
|||+++.+ |.|.....+..++.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~s---------g~gs~~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLAS---------GNGSNLQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEc---------CCChhHHHHHHHHHcCCCCcEEEEEEec
Confidence 79999885 23556778888887765 566655444
No 306
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=31.95 E-value=57 Score=31.03 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=28.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCC-CeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG-HRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~G-h~V~vit~~ 127 (609)
||||+|... |....+-...+...+..++.++| |+|+++=..
T Consensus 1 mkiLvI~as--p~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~ 42 (199)
T PF02525_consen 1 MKILVINAS--PRPEGSFSRALADAFLEGLQEAGPHEVEIRDLY 42 (199)
T ss_dssp EEEEEEE----SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEEEEEcC--CCCccCHHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 899999875 53212333556677889999999 999887654
No 307
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=31.78 E-value=1.3e+02 Score=30.23 Aligned_cols=37 Identities=19% Similarity=0.050 Sum_probs=28.8
Q ss_pred HHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC
Q 007300 472 IAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 508 (609)
Q Consensus 472 l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg 508 (609)
...+|+++--|.-+..--.+..|+.+|+|+|+..+|-
T Consensus 66 ~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 66 ETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred cCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3468999887765555567889999999999877654
No 308
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=31.33 E-value=5.6e+02 Score=25.81 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=71.1
Q ss_pred CCcEEEEEeccc--cccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeec--ChHHHHHHHHh
Q 007300 399 NIPVIGFIGRLE--EQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKF--NIPLAHMIIAG 474 (609)
Q Consensus 399 ~~~~i~~iGrl~--~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~--~~~~~~~~l~~ 474 (609)
+.|++ +.+-.. .+.|++.+++.+.+. .+.=+++=+-+.+....+.+...+++.....++.. +.+.+..+.+.
T Consensus 91 ~~p~v-lm~Y~N~i~~~G~e~F~~~~~~a---GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 91 KAPIV-IFTYYNPVLHYGINKFIKKISQA---GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred CCCEE-EEecccHHHHhCHHHHHHHHHHc---CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 44543 444444 466999999888877 66666666655334445556666777556666655 45677788999
Q ss_pred CcEEEe-cCCCC------CCcHHHHHHH-----HcCCceEEcCCCCc-cc----ccccCcceeEecc
Q 007300 475 ADFILI-PSRFE------PCGLIQLHAM-----RYGTVPIVASTGGL-VD----TVEEGFTGFQMGS 524 (609)
Q Consensus 475 aDv~v~-pS~~E------~~gl~~lEAm-----a~G~PvI~s~~gg~-~e----~i~~~~~G~l~~~ 524 (609)
++-|+. -|+.- ...-.+.|.. ..++|+++ ..|-- +| +...|..|+++|+
T Consensus 167 a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v-GFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 167 APGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL-GFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred CCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE-ECCcCCHHHHHHHHhcCCCEEEECH
Confidence 983333 24432 1222233333 56788776 33322 22 3334578998863
No 309
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.31 E-value=52 Score=33.52 Aligned_cols=32 Identities=41% Similarity=0.700 Sum_probs=24.0
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++++. |.+| ..++..|++.||+|+++...
T Consensus 1 m~I~IiG~--------G~~G---~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGA--------GAIG---GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECC--------CHHH---HHHHHHHHhCCCeEEEEECC
Confidence 78888873 4444 34777788999999999864
No 310
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=31.29 E-value=4.1e+02 Score=24.29 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=41.1
Q ss_pred HHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCcccc-----cccCcceeEecccccccccCCCCCHHHHHHHHH
Q 007300 471 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDT-----VEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 545 (609)
Q Consensus 471 ~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e~-----i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~ 545 (609)
-+..+|+++..+..+.....+.+....+.+|-+.+.....++ +..+. +.++ +-..+..-.+++.|+
T Consensus 67 dl~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~~~~f~~pa~v~~~~--l~ia-------isT~G~sP~la~~lr 137 (157)
T PRK06719 67 DIKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGTESSFHTPGVIRNDE--YVVT-------ISTSGKDPSFTKRLK 137 (157)
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCCcCcEEeeeEEEECC--eEEE-------EECCCcChHHHHHHH
Confidence 467889888877654444444444444556665554443333 33222 2221 002233456666666
Q ss_pred HHHHhhCHHHHHHHHH
Q 007300 546 RALATYGTQALAEMMK 561 (609)
Q Consensus 546 ~ll~~~~~~~~~~~~~ 561 (609)
+-++..-++.++++++
T Consensus 138 ~~ie~~l~~~~~~~a~ 153 (157)
T PRK06719 138 QELTSILPKLIKKISR 153 (157)
T ss_pred HHHHHHhhHHHHHHHh
Confidence 6666532345555443
No 311
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.14 E-value=2.2e+02 Score=24.10 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=42.4
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHH--hCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 428 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA--GADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 428 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~--~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
++++++-+=+.. .+..++...+++. . .|.. ..++++ ..|++++.+..+.-.-.+.+++..|++|++--
T Consensus 24 ~~~~v~~v~d~~---~~~~~~~~~~~~~--~---~~~~--~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EK 93 (120)
T PF01408_consen 24 PDFEVVAVCDPD---PERAEAFAEKYGI--P---VYTD--LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEK 93 (120)
T ss_dssp TTEEEEEEECSS---HHHHHHHHHHTTS--E---EESS--HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEES
T ss_pred CCcEEEEEEeCC---HHHHHHHHHHhcc--c---chhH--HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEc
Confidence 466666333333 2344455666653 2 2222 334565 68998888776666667889999999888765
No 312
>PLN02778 3,5-epimerase/4-reductase
Probab=31.09 E-value=52 Score=33.65 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=23.4
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEE
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTI 124 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vi 124 (609)
..+|||++. ||.|..=..|++.|.++||+|++.
T Consensus 7 ~~~~kiLVt----------G~tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 7 SATLKFLIY----------GKTGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCeEEEE----------CCCCHHHHHHHHHHHhCCCEEEEe
Confidence 346898765 444545566889999999999653
No 313
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=31.08 E-value=56 Score=33.35 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=23.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
|||++++. |++|. .++..|++.||+|++++.
T Consensus 1 mkI~IiG~--------G~iG~---~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGA--------GAVGG---TFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECC--------CHHHH---HHHHHHHHCCCceEEEec
Confidence 78888873 44443 367778899999999886
No 314
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.00 E-value=61 Score=31.35 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=23.8
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+.|+|++++. +||+| ..|++.|.++||+|.+++..
T Consensus 4 ~~~~~vlItGa-------sg~iG---~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGA-------ARGLG---RAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCC-------CchHH---HHHHHHHHHCCCeEEEEeCC
Confidence 33456666543 35555 45788899999999776654
No 315
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=30.97 E-value=96 Score=33.49 Aligned_cols=45 Identities=29% Similarity=0.406 Sum_probs=33.7
Q ss_pred HHHHHHHhCcEEEe--cCCCCC---CcHHHHHHHHcCCceEEcCCCCccc
Q 007300 467 LAHMIIAGADFILI--PSRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 467 ~~~~~l~~aDv~v~--pS~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
.+.++++.||++++ |..-|+ ++-..+..|--|.-+|-+..|++.|
T Consensus 196 ~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 196 SLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVD 245 (409)
T ss_pred CHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccC
Confidence 45679999999776 433344 4455888899999999998888665
No 316
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.90 E-value=5.6e+02 Score=25.66 Aligned_cols=94 Identities=11% Similarity=-0.058 Sum_probs=62.3
Q ss_pred cccCHHHHHHHHhhcccCCeEEEEEeCCC------------hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEE
Q 007300 411 EQKGSDILAAAIPHFIKENVQIIVLGTGK------------KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFI 478 (609)
Q Consensus 411 ~~Kg~~~ll~a~~~l~~~~~~lvivG~g~------------~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~ 478 (609)
-...-+.+++..+.+++.+++++.-|.-+ .+-.+.+.+...+++..+. ...++...+..+...+|++
T Consensus 24 ~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~-Tev~d~~~v~~~~e~vdil 102 (250)
T PRK13397 24 SIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSV-SEIMSERQLEEAYDYLDVI 102 (250)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEE-EeeCCHHHHHHHHhcCCEE
Confidence 34455677777777766688888888622 1234556666667664332 3456777777777889999
Q ss_pred EecCCCCCCcHHHHHHH-HcCCceEEcCC
Q 007300 479 LIPSRFEPCGLIQLHAM-RYGTVPIVAST 506 (609)
Q Consensus 479 v~pS~~E~~gl~~lEAm-a~G~PvI~s~~ 506 (609)
-+||+. ..-..+++++ ..|+||+.+.-
T Consensus 103 qIgs~~-~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 103 QVGARN-MQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred EECccc-ccCHHHHHHHHccCCeEEEeCC
Confidence 999973 3345566666 56999988863
No 317
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=30.80 E-value=51 Score=32.57 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=22.1
Q ss_pred cchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+|. ...+|+.+|++.|++|.++=..
T Consensus 10 kGGvGKTt~a~~lA~~la~~g~~vlliD~D 39 (261)
T TIGR01968 10 KGGVGKTTTTANLGTALARLGKKVVLIDAD 39 (261)
T ss_pred CCCccHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 455554 7788999999999999888544
No 318
>PRK06753 hypothetical protein; Provisional
Probab=30.55 E-value=42 Score=35.33 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=24.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++|+.. | +|+. +|..|+++|++|+|+=..
T Consensus 1 ~~V~IvGgG--~----aGl~-----~A~~L~~~g~~v~v~E~~ 32 (373)
T PRK06753 1 MKIAIIGAG--I----GGLT-----AAALLQEQGHEVKVFEKN 32 (373)
T ss_pred CEEEEECCC--H----HHHH-----HHHHHHhCCCcEEEEecC
Confidence 789998853 2 5555 788899999999887644
No 319
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=30.55 E-value=5.7e+02 Score=25.66 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=58.8
Q ss_pred EeccccccCHHHHHHHHhhcccCCeEEEE-------------EeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHH
Q 007300 406 IGRLEEQKGSDILAAAIPHFIKENVQIIV-------------LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMII 472 (609)
Q Consensus 406 iGrl~~~Kg~~~ll~a~~~l~~~~~~lvi-------------vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l 472 (609)
++...--...+.+++.++.+.....++.. -|.| .+-.+.+++...+++..+ ....++...+..+.
T Consensus 29 IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~-~t~~~d~~~~~~l~ 106 (260)
T TIGR01361 29 IAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLG-EEGLKLLRRAADEHGLPV-VTEVMDPRDVEIVA 106 (260)
T ss_pred EEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccH-HHHHHHHHHHHHHhCCCE-EEeeCChhhHHHHH
Confidence 44455556677788887777652223222 2222 223345666676766323 23455666666666
Q ss_pred HhCcEEEecCCCCCCcHHHHHHH-HcCCceEEcCC
Q 007300 473 AGADFILIPSRFEPCGLIQLHAM-RYGTVPIVAST 506 (609)
Q Consensus 473 ~~aDv~v~pS~~E~~gl~~lEAm-a~G~PvI~s~~ 506 (609)
..+|++-++|+ +..-..++++. ..|+||+.+.-
T Consensus 107 ~~~d~lkI~s~-~~~n~~LL~~~a~~gkPVilk~G 140 (260)
T TIGR01361 107 EYADILQIGAR-NMQNFELLKEVGKQGKPVLLKRG 140 (260)
T ss_pred hhCCEEEECcc-cccCHHHHHHHhcCCCcEEEeCC
Confidence 77999999997 33344455554 56999998873
No 320
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=30.52 E-value=99 Score=32.04 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=32.7
Q ss_pred HHHHHHHhCcEEEecC--CCCCC---cHHHHHHHHcCCceEEcCCCCccc
Q 007300 467 LAHMIIAGADFILIPS--RFEPC---GLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 467 ~~~~~l~~aDv~v~pS--~~E~~---gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
.+.++++.||++++.- .-+.- +-..++.|.-|..+|-..-|++.+
T Consensus 183 ~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVd 232 (312)
T PRK15469 183 ELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVV 232 (312)
T ss_pred cHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccC
Confidence 4567899999987743 33443 445888898898888888888665
No 321
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=30.48 E-value=93 Score=26.38 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=27.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCC---CeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANG---HRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~G---h~V~vit~~ 127 (609)
|||++|... +|+ ..........++......| ++|.|+...
T Consensus 1 k~v~~i~~~-~p~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g 43 (122)
T PF02635_consen 1 KKVFFIVTS-GPY--DDERAKIALRLANAAAAMGDYGHDVVVFFHG 43 (122)
T ss_dssp EEEEEEE-S--TT--TBSHHHHHHHHHHHHHHTTHTTSEEEEEE-G
T ss_pred CEEEEEecC-CCC--CCHHHHHHHHHHHHHHHcCCCCCcEEEEEEc
Confidence 688888875 453 2223566777888889999 999998866
No 322
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=30.44 E-value=36 Score=34.42 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=27.0
Q ss_pred ccchHHHHhhchhHHHHhCCCeEEEEeecCC
Q 007300 99 KTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (609)
Q Consensus 99 ~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~ 129 (609)
.+||.|..=..|...|.+.||+|++++.+..
T Consensus 3 iTGgTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 3 ITGGTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred EeccccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 3688898888899999999999999997744
No 323
>PRK00211 sulfur relay protein TusC; Validated
Probab=30.23 E-value=72 Score=27.89 Aligned_cols=39 Identities=23% Similarity=0.055 Sum_probs=28.6
Q ss_pred ceEEEEEeecCCccccch-HHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGG-LGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG-~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+||... +|+ |. .+.-..+++-+++..+++|.++-..
T Consensus 2 ~ki~~i~~~-~Py---g~~~~~eaLd~ala~~a~~~~v~vff~~ 41 (119)
T PRK00211 2 KRIAFVFRQ-APH---GTASGREGLDALLATSAFTEDIGVFFID 41 (119)
T ss_pred ceEEEEecC-CCC---CCHHHHHHHHHHHHHhcccCCeeEEEEh
Confidence 469999887 686 43 4444455688888899999888865
No 324
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=29.87 E-value=62 Score=32.19 Aligned_cols=37 Identities=32% Similarity=0.554 Sum_probs=27.5
Q ss_pred ceEEEEEeecCCccccchHHH--HhhchhHHHH-hCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGD--VLGGLPPALA-ANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~--~~~~La~aL~-~~Gh~V~vit~~ 127 (609)
|+|+-|.+. .||+|. ...+|+.+|+ ..||+|-++=..
T Consensus 2 ~~iI~v~n~------KGGvGKTT~a~nLa~~La~~~~~kVLliDlD 41 (259)
T COG1192 2 MKIIAVANQ------KGGVGKTTTAVNLAAALAKRGGKKVLLIDLD 41 (259)
T ss_pred CEEEEEEec------CCCccHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 676666654 577765 5567999999 666999888655
No 325
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=29.39 E-value=89 Score=28.92 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.6
Q ss_pred HHHhCcEEEecCC----CCCCcH--HHHHHHHcCCceEEcCCC
Q 007300 471 IIAGADFILIPSR----FEPCGL--IQLHAMRYGTVPIVASTG 507 (609)
Q Consensus 471 ~l~~aDv~v~pS~----~E~~gl--~~lEAma~G~PvI~s~~g 507 (609)
+-..+|++|+.-. .|+-|+ .+.+|++.|+||+++-..
T Consensus 90 l~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 90 LAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred HhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 5566898888753 255566 589999999999988543
No 326
>PRK06179 short chain dehydrogenase; Provisional
Probab=29.39 E-value=62 Score=32.16 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=19.3
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+||+| ..+++.|+++|++|.+++..
T Consensus 13 sg~iG---~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 13 SSGIG---RATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CCHHH---HHHHHHHHHCCCEEEEEeCC
Confidence 46665 46888899999999887754
No 327
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=29.28 E-value=4.6e+02 Score=26.96 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChH
Q 007300 387 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIP 466 (609)
Q Consensus 387 ~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~ 466 (609)
.+++.+|-- +...|.|+|-+.+..=...++.++.++ ++++.+++...-.....+.+...+.+..+... .
T Consensus 140 Ti~e~~g~l---~g~~va~vGD~~~~~v~~Sl~~~~a~~---g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~-----~ 208 (301)
T TIGR00670 140 TIYEEFGRL---DGLKIALVGDLKYGRTVHSLAEALTRF---GVEVYLISPEELRMPKEILEELKAKGIKVRET-----E 208 (301)
T ss_pred HHHHHhCCC---CCCEEEEEccCCCCcHHHHHHHHHHHc---CCEEEEECCccccCCHHHHHHHHHcCCEEEEE-----C
Confidence 345566621 336899999765566677888888887 78999999744112223333333444334321 2
Q ss_pred HHHHHHHhCcEEEecCC
Q 007300 467 LAHMIIAGADFILIPSR 483 (609)
Q Consensus 467 ~~~~~l~~aDv~v~pS~ 483 (609)
++...+++||++...+.
T Consensus 209 d~~~a~~~aDvvyt~~~ 225 (301)
T TIGR00670 209 SLEEVIDEADVLYVTRI 225 (301)
T ss_pred CHHHHhCCCCEEEECCc
Confidence 34457999998877654
No 328
>PRK08605 D-lactate dehydrogenase; Validated
Probab=28.95 E-value=1.8e+02 Score=30.35 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=32.3
Q ss_pred HHHHHHhCcEEEe--cCCCCCC---cHHHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILI--PSRFEPC---GLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~--pS~~E~~---gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.++++.||++++ |...+.- +...++.|.-|..+|-+..|+..+
T Consensus 194 l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 194 IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred HHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 4568999999876 4444443 345788899999889888888654
No 329
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=28.91 E-value=72 Score=32.63 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=20.0
Q ss_pred chHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 101 GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||.|-.=..|++.|.++||+|.++..+
T Consensus 11 GatGfIG~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 11 GASGYIASWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred CChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 444444456899999999999887754
No 330
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=28.80 E-value=2.4e+02 Score=28.13 Aligned_cols=103 Identities=15% Similarity=0.197 Sum_probs=66.8
Q ss_pred EEEEEeccccccCHHHHHHHHhhccc-CCeEEEEEeCCC----hhhHHHHHHHHHhCCCceEEEe--ecChHHHHHHHHh
Q 007300 402 VIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVA--KFNIPLAHMIIAG 474 (609)
Q Consensus 402 ~i~~iGrl~~~Kg~~~ll~a~~~l~~-~~~~lvivG~g~----~~~~~~l~~l~~~~~~~v~~~~--~~~~~~~~~~l~~ 474 (609)
.++|+|-+-..-|...+-+-++.|+. -.+.|+|+.... ..+-+.+-+...+.+..+.-.+ .|+..+...++..
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~~ 81 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFIDN 81 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhhc
Confidence 48999999999999999999999976 467899986521 1222222222233444454333 4677788889999
Q ss_pred CcEEEecCCC-CC---CcHHHHHHHHcCCceEEcCC
Q 007300 475 ADFILIPSRF-EP---CGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 475 aDv~v~pS~~-E~---~gl~~lEAma~G~PvI~s~~ 506 (609)
.+.++=|..+ ++ .|..+++ ..|.-+-+++.
T Consensus 82 ~~~ilRP~N~p~~~~G~G~~~f~--~ng~ki~V~Nl 115 (266)
T COG1692 82 ADRILRPANYPDGTPGKGSRIFK--INGKKLAVINL 115 (266)
T ss_pred ccceeccCCCCCCCCcceEEEEE--eCCcEEEEEEe
Confidence 9999999886 33 3333443 34444444443
No 331
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=28.69 E-value=59 Score=32.89 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=22.5
Q ss_pred cchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+|. .+.+|+.+|+++|++|-+|=..
T Consensus 9 KGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 9 KGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 477765 5678999999999999888654
No 332
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=28.61 E-value=79 Score=32.22 Aligned_cols=38 Identities=29% Similarity=0.481 Sum_probs=28.9
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCC
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~ 129 (609)
.+++||++. ||.|-+-..|+..|..+||+|.++--..+
T Consensus 25 ~~~lrI~it----------GgaGFIgSHLvdkLm~egh~VIa~Dn~ft 62 (350)
T KOG1429|consen 25 SQNLRILIT----------GGAGFIGSHLVDKLMTEGHEVIALDNYFT 62 (350)
T ss_pred CCCcEEEEe----------cCcchHHHHHHHHHHhcCCeEEEEecccc
Confidence 456888864 56676777899999999999987765433
No 333
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=28.52 E-value=19 Score=39.76 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=21.4
Q ss_pred hHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 102 GLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 102 G~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
+=-..+..++++|+++||+|+++++..
T Consensus 11 SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 11 SHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp -SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred CHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 334567889999999999999999874
No 334
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=28.52 E-value=2.3e+02 Score=26.96 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=23.3
Q ss_pred HhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 473 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 473 ~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
..=|++++.... .-..++.||...|+|+|+--
T Consensus 126 ~~Pdlviv~~~~-~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDPR-KEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCCc-cchHHHHHHHHcCCCEEEEe
Confidence 345676666543 23778999999999998863
No 335
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=28.40 E-value=79 Score=28.23 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=27.8
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEE
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMT 123 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~v 123 (609)
|||+++-. +.+|....+...++..|...|++|.+
T Consensus 1 M~i~IiY~-----S~tGnTe~iA~~ia~~l~~~g~~v~~ 34 (140)
T TIGR01754 1 MRILLAYL-----SLSGNTEEVAFMIQDYLQKDGHEVDI 34 (140)
T ss_pred CeEEEEEE-----CCCChHHHHHHHHHHHHhhCCeeEEe
Confidence 78777753 34788999999999999999999873
No 336
>PRK07574 formate dehydrogenase; Provisional
Probab=28.38 E-value=1.6e+02 Score=31.47 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=33.1
Q ss_pred HHHHHHhCcEEEecCC--CCC---CcHHHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILIPSR--FEP---CGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~pS~--~E~---~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.++++.||++++..- -|. ++-..+..|.-|.-+|-+..|++.+
T Consensus 242 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVD 290 (385)
T PRK07574 242 FDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVD 290 (385)
T ss_pred HHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhh
Confidence 4568999999876433 343 4556899999999999998888664
No 337
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=28.38 E-value=55 Score=35.69 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=25.8
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
+.|||++. ||.|-+=..|++.|.++||+|.++..
T Consensus 119 ~~mkILVT----------GatGFIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVT----------GGAGFVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 46887764 55565566789999999999988764
No 338
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=28.22 E-value=1.4e+02 Score=19.64 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=20.2
Q ss_pred ceEEEEEee--cCCccccchHHHHhhchhHHHHhCCCeEE
Q 007300 85 LNILFVGTE--VAPWSKTGGLGDVLGGLPPALAANGHRVM 122 (609)
Q Consensus 85 MkIl~vs~~--~~P~~~~GG~~~~~~~La~aL~~~Gh~V~ 122 (609)
|||++++.. .-.+ .---..-+..|.+-+...|.+|.
T Consensus 1 mkiai~n~gnni~~f--kt~p~setiyl~~~~~~mgl~vd 38 (38)
T PF09198_consen 1 MKIAIINMGNNIQNF--KTTPSSETIYLFKCISDMGLNVD 38 (38)
T ss_dssp -EEEEEESSS--SSS--SSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CeEEEEecCCceece--eecCccceEeHHHHHHHhCCCCC
Confidence 788888753 1111 11123345668888999998884
No 339
>PRK06180 short chain dehydrogenase; Provisional
Probab=27.97 E-value=65 Score=32.27 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=18.7
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+| ..+++.|+++|++|.++...
T Consensus 13 sggiG---~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 13 SSGFG---RALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CChHH---HHHHHHHHhCcCEEEEEeCC
Confidence 46666 44777899999999887754
No 340
>PRK06436 glycerate dehydrogenase; Provisional
Probab=27.92 E-value=1.8e+02 Score=30.02 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=32.5
Q ss_pred HHHHHHhCcEEEec--CCCCC---CcHHHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILIP--SRFEP---CGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~p--S~~E~---~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.++++.||++++. ..-|. ++-..+++|.-|.-+|-+..|++.+
T Consensus 167 l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd 215 (303)
T PRK06436 167 PEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVD 215 (303)
T ss_pred HHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccC
Confidence 55689999988763 33344 4556899999998888888887654
No 341
>PRK08163 salicylate hydroxylase; Provisional
Probab=27.74 E-value=56 Score=34.73 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=26.4
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
++++|++|+.. .+|+. +|.+|++.|++|+|+=..
T Consensus 3 ~~~~V~IvGaG------iaGl~-----~A~~L~~~g~~v~v~Er~ 36 (396)
T PRK08163 3 KVTPVLIVGGG------IGGLA-----AALALARQGIKVKLLEQA 36 (396)
T ss_pred CCCeEEEECCc------HHHHH-----HHHHHHhCCCcEEEEeeC
Confidence 35799999864 36666 788899999999888543
No 342
>PRK07308 flavodoxin; Validated
Probab=27.65 E-value=75 Score=28.55 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.8
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
+|....+...++..|.+.|++|.+.-.
T Consensus 12 tGnTe~iA~~ia~~l~~~g~~~~~~~~ 38 (146)
T PRK07308 12 TGNTEEIADIVADKLRELGHDVDVDEC 38 (146)
T ss_pred CchHHHHHHHHHHHHHhCCCceEEEec
Confidence 699999999999999999999887643
No 343
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=27.45 E-value=65 Score=29.66 Aligned_cols=37 Identities=41% Similarity=0.505 Sum_probs=30.1
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
+++||++|+. +-+.++..++..+++.|.+|.+++|..
T Consensus 1 ~gl~i~~vGD---------~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGD---------GHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TTEEEEEESS---------TTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCCEEEEECC---------CCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 3688999883 224578889999999999999999974
No 344
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.40 E-value=64 Score=30.73 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=27.5
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+|++|-++ -.++++|++.+.+.|++|+|+--.
T Consensus 2 ~~IL~IDNy----------DSFtyNLv~yl~~lg~~v~V~rnd 34 (191)
T COG0512 2 MMILLIDNY----------DSFTYNLVQYLRELGAEVTVVRND 34 (191)
T ss_pred ceEEEEECc----------cchHHHHHHHHHHcCCceEEEECC
Confidence 789999875 237999999999999999888754
No 345
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=27.35 E-value=1.1e+02 Score=35.15 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=27.7
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
++||++|++. |++..=| +++....|+++||+|.|++..
T Consensus 369 ~~rvLv~spH--PDDevi~----~GGTlarl~~~G~~V~vv~~T 406 (652)
T PRK02122 369 PKRVIIFSPH--PDDDVIS----MGGTFRRLVEQGHDVHVAYQT 406 (652)
T ss_pred CceEEEEEeC--CCchHhh----hHHHHHHHHHCCCcEEEEEec
Confidence 5899999984 7643222 344557899999999998755
No 346
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=27.10 E-value=31 Score=25.64 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCCHHHHHHHHHH
Q 007300 491 QLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRR 546 (609)
Q Consensus 491 ~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~~ 546 (609)
.-=|..+|+|+++.+-.-..+.|....+-|-. +..++++|.++|++
T Consensus 8 ~~~A~~~~lp~~~gSDAH~~~~vG~~~t~~~~----------~~~s~~~l~~alr~ 53 (56)
T PF13263_consen 8 AELAEKYGLPFTGGSDAHFLEEVGRGYTEFEG----------PIRSPEELLEALRA 53 (56)
T ss_dssp HHHHHHTT--EEEE--BSSGGGTTTTHHHH--------------------------
T ss_pred HHHHHHcCCCeEeEEcccChhhcCCEeeeccc----------cccccccccccccc
Confidence 33467899999999887777777665555532 55566777777653
No 347
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.82 E-value=2.2e+02 Score=23.67 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=44.4
Q ss_pred EEEEeCCC--hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHH--HHcCCceEEcCC
Q 007300 432 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHA--MRYGTVPIVAST 506 (609)
Q Consensus 432 lvivG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEA--ma~G~PvI~s~~ 506 (609)
++++|.|- .-+.+.+++...+.+..+. ....+..........+|++++.+... +-..-++. -.+|+||+.-+.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~-v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVK-IAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEE-EEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeCh
Confidence 56778774 3456777777777664443 23344455555678899998877632 22333443 345779987663
No 348
>PRK13236 nitrogenase reductase; Reviewed
Probab=26.69 E-value=73 Score=32.67 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.1
Q ss_pred CCceEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
..|+++-++. .||+|. ...+|+.+|+++|++|-++=..
T Consensus 4 ~~~~~~~~~G-------KGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 4 ENIRQIAFYG-------KGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred cCceEEEEEC-------CCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 3577665532 477765 4578999999999999888655
No 349
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=26.59 E-value=77 Score=29.78 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=29.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+++-. +.+|-...+...++..|.. |++|.++-..
T Consensus 1 MkilIvY~-----S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~ 37 (177)
T PRK11104 1 MKTLILYS-----SRDGQTRKIASYIASELKE-GIQCDVVNLH 37 (177)
T ss_pred CcEEEEEE-----CCCChHHHHHHHHHHHhCC-CCeEEEEEhh
Confidence 78888764 3478888889999999988 9999877543
No 350
>PRK05993 short chain dehydrogenase; Provisional
Probab=26.59 E-value=76 Score=31.83 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=23.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+|.++|+.- .||+|. .+++.|+++|++|.++..+
T Consensus 4 ~k~vlItGa------sggiG~---~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGC------SSGIGA---YCARALQSDGWRVFATCRK 37 (277)
T ss_pred CCEEEEeCC------CcHHHH---HHHHHHHHCCCEEEEEECC
Confidence 455555532 466664 4788899999999887654
No 351
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=26.35 E-value=1.1e+02 Score=26.57 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=30.5
Q ss_pred ceEEEEEeecCCccccchHHHHh--hchhHHHHhCCCeEEEEeecC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVL--GGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~--~~La~aL~~~Gh~V~vit~~~ 128 (609)
|||+.|+. .| .|-.-.++ ..|.++-.++||++.|=+-..
T Consensus 3 mkivaVta--cp---~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 3 AYLVAVTA--CV---SGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred ceEEEEee--CC---CcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 89999986 35 57776666 568888889999999888653
No 352
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=26.00 E-value=6.5e+02 Score=24.84 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=62.6
Q ss_pred EEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC-----hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCc
Q 007300 402 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-----KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGAD 476 (609)
Q Consensus 402 ~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~-----~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aD 476 (609)
+++..+++..--=++...+.++.+...+-+++++-+-. +.+.+...+...+++-.+...-.. ++..+.+..||
T Consensus 4 ll~s~~~~~~~~~l~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~d~~~~l~~ad 81 (233)
T PRK05282 4 LLLSNSTLPGTGYLEHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--ADPVAAIENAE 81 (233)
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--hhhHHHHhcCC
Confidence 44555555542223666666666644455677765432 334555555555666544433222 23346789999
Q ss_pred EEEecCC--------CCCCcH--HHHHHHHcCCceEEcCCCC
Q 007300 477 FILIPSR--------FEPCGL--IQLHAMRYGTVPIVASTGG 508 (609)
Q Consensus 477 v~v~pS~--------~E~~gl--~~lEAma~G~PvI~s~~gg 508 (609)
+++++-= +...|+ .+-|+...|+|++.++.|.
T Consensus 82 ~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 82 AIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred EEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 8888742 222333 4678899999999999876
No 353
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=25.94 E-value=6e+02 Score=24.43 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=49.0
Q ss_pred ccCHHHHHHHHhhcccC--CeEEEEEeCC-ChhhHHHHHHHH--HhCCCceE-EEeecChHHHHHHHHhCcEEEecCCCC
Q 007300 412 QKGSDILAAAIPHFIKE--NVQIIVLGTG-KKPMEKQLEQLE--ILYPEKAR-GVAKFNIPLAHMIIAGADFILIPSRFE 485 (609)
Q Consensus 412 ~Kg~~~ll~a~~~l~~~--~~~lvivG~g-~~~~~~~l~~l~--~~~~~~v~-~~~~~~~~~~~~~l~~aDv~v~pS~~E 485 (609)
..-.+.+.+.+..+.+. .+.++..... ............ .....++. .....+..+...+++.||++|-....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~RlH- 267 (286)
T PF04230_consen 189 EEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNEIDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRLH- 267 (286)
T ss_pred hhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHhhhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCCH-
Confidence 44456666777766553 3333333332 222222222221 11112232 22334666777899999999976542
Q ss_pred CCcHHHHHHHHcCCceEEcCC
Q 007300 486 PCGLIQLHAMRYGTVPIVAST 506 (609)
Q Consensus 486 ~~gl~~lEAma~G~PvI~s~~ 506 (609)
..+=|+++|+|+|+-+.
T Consensus 268 ----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 268 ----GAILALSLGVPVIAISY 284 (286)
T ss_pred ----HHHHHHHcCCCEEEEec
Confidence 24458999999998653
No 354
>PLN02240 UDP-glucose 4-epimerase
Probab=25.77 E-value=69 Score=33.29 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=24.0
Q ss_pred cCCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEe
Q 007300 81 CGVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 81 ~~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit 125 (609)
+|+++||++.+. +|++| ..|++.|.++||+|.++.
T Consensus 2 ~~~~~~vlItGa-------tG~iG---~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGG-------AGYIG---SHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECC-------CChHH---HHHHHHHHHCCCEEEEEe
Confidence 355667766542 35554 457888999999998876
No 355
>PRK06924 short chain dehydrogenase; Provisional
Probab=25.61 E-value=71 Score=31.22 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=22.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||.++|+.- .||+| ..+++.|+++|++|.+++..
T Consensus 1 ~k~vlItGa------sggiG---~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 1 MRYVIITGT------SQGLG---EAIANQLLEKGTHVISISRT 34 (251)
T ss_pred CcEEEEecC------CchHH---HHHHHHHHhcCCEEEEEeCC
Confidence 455555522 35555 45789999999999777643
No 356
>PRK05693 short chain dehydrogenase; Provisional
Probab=25.43 E-value=71 Score=31.87 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=23.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||.++|+.- +||+| ..+++.|+++|++|.+++.+
T Consensus 1 mk~vlItGa------sggiG---~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 1 MPVVLITGC------SSGIG---RALADAFKAAGYEVWATARK 34 (274)
T ss_pred CCEEEEecC------CChHH---HHHHHHHHHCCCEEEEEeCC
Confidence 566666632 46666 45778889999999877654
No 357
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=25.39 E-value=7e+02 Score=25.45 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=17.0
Q ss_pred HhhchhHHHHhCCCeEEEEe
Q 007300 106 VLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 106 ~~~~La~aL~~~Gh~V~vit 125 (609)
+-.++++.|.++|++|.+..
T Consensus 13 r~~~~~~~l~~~G~~v~~~g 32 (296)
T PRK08306 13 RQLELIRKLVELGAKVSLVG 32 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 56679999999999999844
No 358
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=25.35 E-value=6.2e+02 Score=24.44 Aligned_cols=97 Identities=16% Similarity=0.096 Sum_probs=54.0
Q ss_pred CHHHHHHHHhhcccCCeEEEEEeCCC---hhhHHHHHHHHHhCCCc-eEEEeec-----ChHHHHHHHHhCcEEEecCC-
Q 007300 414 GSDILAAAIPHFIKENVQIIVLGTGK---KPMEKQLEQLEILYPEK-ARGVAKF-----NIPLAHMIIAGADFILIPSR- 483 (609)
Q Consensus 414 g~~~ll~a~~~l~~~~~~lvivG~g~---~~~~~~l~~l~~~~~~~-v~~~~~~-----~~~~~~~~l~~aDv~v~pS~- 483 (609)
..+.+-+.++.....+.+++++.+.. ..+.+.+.+...+++.+ +...... +.+.....+..||++++.--
T Consensus 14 ~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~ 93 (217)
T cd03145 14 NRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGD 93 (217)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCc
Confidence 33444444444433566777776532 23333344444444432 3332222 23445568999999988642
Q ss_pred -------CCCCcH--HHHHHHHcCCceEEcCCCCcc
Q 007300 484 -------FEPCGL--IQLHAMRYGTVPIVASTGGLV 510 (609)
Q Consensus 484 -------~E~~gl--~~lEAma~G~PvI~s~~gg~~ 510 (609)
+...++ .+.++...|+|++.++.|.+.
T Consensus 94 ~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i 129 (217)
T cd03145 94 QLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAV 129 (217)
T ss_pred HHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHh
Confidence 233343 467778899999999876544
No 359
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.21 E-value=64 Score=35.46 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=23.9
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++++.. ..|++ -|.+|+++||+|+++=.+
T Consensus 1 ~rVai~GaG------~AgL~-----~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAG------LAGLA-----AAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEccc------HHHHH-----HHHHHHhCCCceEEEecc
Confidence 688888743 23444 678899999999998765
No 360
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=25.16 E-value=71 Score=31.01 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=22.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
||.++|+.- .||+| ..+++.|+++||+|.++..
T Consensus 1 ~~~~lItGa------~g~iG---~~l~~~l~~~g~~v~~~~~ 33 (247)
T PRK09730 1 MAIALVTGG------SRGIG---RATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred CCEEEEeCC------CchHH---HHHHHHHHHCCCEEEEEeC
Confidence 566666532 34544 5588889999999977543
No 361
>PRK08105 flavodoxin; Provisional
Probab=25.13 E-value=90 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=24.5
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
+|-.+.+...|+..|.++|++|.++..
T Consensus 12 tGnte~~A~~l~~~l~~~g~~~~~~~~ 38 (149)
T PRK08105 12 YGNALLVAEEAEAILTAQGHEVTLFED 38 (149)
T ss_pred chHHHHHHHHHHHHHHhCCCceEEech
Confidence 789999999999999999999988764
No 362
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=25.10 E-value=95 Score=26.85 Aligned_cols=38 Identities=21% Similarity=0.079 Sum_probs=28.1
Q ss_pred eEEEEEeecCCccccch-HHHHhhchhHHHHhCCCeEEEEeec
Q 007300 86 NILFVGTEVAPWSKTGG-LGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG-~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||+||... +|+ |. .+.-..+++-+++..+++|.|+-..
T Consensus 1 kil~i~~~-~Py---g~~~~~e~l~~al~~aa~~~eV~vff~~ 39 (116)
T TIGR03010 1 KLAFVFRQ-APH---GTASGREGLDALLAASAFDEDIGVFFID 39 (116)
T ss_pred CEEEEEcC-CCC---CcchHHHHHHHHHHHHhccCCeEEEEec
Confidence 68888876 676 33 3444555688889999999998866
No 363
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=24.98 E-value=78 Score=34.26 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|..|||++|+..+ -|.. ++..|++.||+|.++-..
T Consensus 1 m~~~kI~VIGlG~------~G~~-----~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGY------IGLP-----TAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcch------hhHH-----HHHHHHhCCCEEEEEeCC
Confidence 3458999987542 3333 889999999999888754
No 364
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=24.97 E-value=2.7e+02 Score=25.59 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=52.4
Q ss_pred EEEEEeccccccCHHHHHHHH------hhcccCC-eEEEE-EeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHH
Q 007300 402 VIGFIGRLEEQKGSDILAAAI------PHFIKEN-VQIIV-LGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIA 473 (609)
Q Consensus 402 ~i~~iGrl~~~Kg~~~ll~a~------~~l~~~~-~~lvi-vG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~ 473 (609)
+++.+|.-. .|.|+.++ ++|.+.. .+|+| .|.|..-............+-.+ ....|... +.+.++
T Consensus 6 vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~i-d~y~f~ps-l~e~I~ 79 (170)
T KOG3349|consen 6 VFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTI-DGYDFSPS-LTEDIR 79 (170)
T ss_pred EEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEE-EEEecCcc-HHHHHh
Confidence 566666533 56666543 3333333 34544 67774333444444442222222 22344444 345788
Q ss_pred hCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 474 GADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 474 ~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
.||+++.- +-.-+++|-+..|+|.|+--
T Consensus 80 ~AdlVIsH----AGaGS~letL~l~KPlivVv 107 (170)
T KOG3349|consen 80 SADLVISH----AGAGSCLETLRLGKPLIVVV 107 (170)
T ss_pred hccEEEec----CCcchHHHHHHcCCCEEEEe
Confidence 89998842 23347899999999987654
No 365
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=24.94 E-value=84 Score=31.46 Aligned_cols=35 Identities=31% Similarity=0.550 Sum_probs=26.5
Q ss_pred ceEEEEEeecCCccccchHH--HHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLG--DVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~--~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+|++.+ .||+| +.+.+|+.+|+++|++|-++=..
T Consensus 1 ~~i~v~g--------KGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYG--------KGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEec--------CCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 6666663 36655 45688999999999999888655
No 366
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=24.90 E-value=83 Score=32.84 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
++|+|++.+. +|++| ..+++.|.++||+|.++...
T Consensus 3 ~~k~ilItGa-------tG~IG---~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 3 QGKKVLVTGH-------TGFKG---SWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CCCEEEEECC-------CChhH---HHHHHHHHHCCCEEEEEeCC
Confidence 3567655543 35555 56889999999999877643
No 367
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=24.73 E-value=4.7e+02 Score=22.78 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=41.4
Q ss_pred ceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccc
Q 007300 456 KARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 456 ~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
.+.+....+.+.....++.+|+++..+.. .+.-.+++++ -++-.|++...|.-.
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~ 73 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDN 73 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTT
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCc
Confidence 46666666778888899999999986543 5777889888 888899998887654
No 368
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=24.72 E-value=86 Score=30.92 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=24.0
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.|+|+++.. +|++| ..+++.|.++||+|.+++..
T Consensus 17 ~~~ilItGa-------sG~iG---~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGA-------TGRTG---KRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECC-------CcHHH---HHHHHHHHhCCCEEEEEecC
Confidence 467877764 35555 44677788899999887744
No 369
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=24.67 E-value=3.8e+02 Score=28.13 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=48.2
Q ss_pred EEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHH-----------HHHHHHhCcEEEe--cCCCCC---CcHHHHHHH
Q 007300 432 IIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL-----------AHMIIAGADFILI--PSRFEP---CGLIQLHAM 495 (609)
Q Consensus 432 lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~-----------~~~~l~~aDv~v~--pS~~E~---~gl~~lEAm 495 (609)
|-++|.|. .-.++....+..+.++..+-.+.... ..+++..||++.+ |-.-+. ..-..+-+|
T Consensus 149 LgvlG~Gr--IGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~m 226 (406)
T KOG0068|consen 149 LGVLGLGR--IGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKM 226 (406)
T ss_pred EEEeeccc--chHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHh
Confidence 44555555 44445555554554444444432211 2358999999865 222222 334577889
Q ss_pred HcCCceEEcCCCCcccc
Q 007300 496 RYGTVPIVASTGGLVDT 512 (609)
Q Consensus 496 a~G~PvI~s~~gg~~e~ 512 (609)
--|+-+|-.+.||+.|.
T Consensus 227 KkGVriIN~aRGGvVDe 243 (406)
T KOG0068|consen 227 KKGVRIINVARGGVVDE 243 (406)
T ss_pred hCCcEEEEecCCceech
Confidence 99999999999998874
No 370
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=24.62 E-value=48 Score=32.53 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.6
Q ss_pred hHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 102 GLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 102 G~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
|+|++-..+|+.|.++||+|.++-...
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 556677789999999999999987663
No 371
>PRK07577 short chain dehydrogenase; Provisional
Probab=24.61 E-value=1.1e+02 Score=29.43 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=23.6
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
++++|++++. +||+| ..+++.|+++|++|.++...
T Consensus 2 ~~k~vlItG~-------s~~iG---~~ia~~l~~~G~~v~~~~r~ 36 (234)
T PRK07577 2 SSRTVLVTGA-------TKGIG---LALSLRLANLGHQVIGIARS 36 (234)
T ss_pred CCCEEEEECC-------CCcHH---HHHHHHHHHCCCEEEEEeCC
Confidence 3456655433 35555 45688899999999887754
No 372
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=24.50 E-value=95 Score=28.17 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=30.2
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
|||++|... .+|....+...++..|...|++|.+...
T Consensus 2 ~ki~Ivy~S-----~tGnTe~vA~~i~~~l~~~~~~~~~~~~ 38 (151)
T COG0716 2 MKILIVYGS-----RTGNTEKVAEIIAEELGADGFEVDIDIR 38 (151)
T ss_pred CeEEEEEEc-----CCCcHHHHHHHHHHHhccCCceEEEeec
Confidence 678887653 3799999999999999999999955543
No 373
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=24.45 E-value=1.7e+02 Score=32.16 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=28.6
Q ss_pred CCCceEEEEEeecCCccccchHH-HHhhchhHHHHhCCCeEEEEeec
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLG-DVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~-~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
..++||++... ||.+ ....+|.+.|.+.|++|.|+...
T Consensus 68 l~~k~IllgVt--------GsIAayka~~lvr~L~k~G~~V~VvmT~ 106 (475)
T PRK13982 68 LASKRVTLIIG--------GGIAAYKALDLIRRLKERGAHVRCVLTK 106 (475)
T ss_pred cCCCEEEEEEc--------cHHHHHHHHHHHHHHHhCcCEEEEEECc
Confidence 44678888763 4443 45677999999999999998865
No 374
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=24.41 E-value=3e+02 Score=28.52 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=68.5
Q ss_pred HHHHHHHHhhcccCCeE-E-EEEeCCC---hhhHHHHHHHHHhCCCceEEEeecChHH----HHHHHHhCcEEEecCCC-
Q 007300 415 SDILAAAIPHFIKENVQ-I-IVLGTGK---KPMEKQLEQLEILYPEKARGVAKFNIPL----AHMIIAGADFILIPSRF- 484 (609)
Q Consensus 415 ~~~ll~a~~~l~~~~~~-l-vivG~g~---~~~~~~l~~l~~~~~~~v~~~~~~~~~~----~~~~l~~aDv~v~pS~~- 484 (609)
++.-++.++++. |+++ + ++...+. ....+.++..+.+.+.++....--+..+ ...+....|++..|...
T Consensus 145 v~q~i~lik~~~-Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 145 VAQQIELIKALL-PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred HHHHHHHHHHhC-CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchH
Confidence 445555555554 4444 3 4555554 2355566666666665554433322222 22355788998888654
Q ss_pred C--CCcHHHHHHHHcCCceEEcCCCCcccccccCcceeEecccccccccCCCCC-HHHHHHHHHHHHH
Q 007300 485 E--PCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVD-VAAVSTTVRRALA 549 (609)
Q Consensus 485 E--~~gl~~lEAma~G~PvI~s~~gg~~e~i~~~~~G~l~~~~~~~~~~v~~~d-~~~la~~I~~ll~ 549 (609)
. ++...+.+|...++|+++++.+ .+++|..--+- ++..+ --+.+..+.++|.
T Consensus 224 i~s~~~~l~~~a~~~kiPli~sd~~----~V~~Ga~aA~g---------vdy~~~G~qtg~~v~~ILk 278 (322)
T COG2984 224 IVSAIESLLQVANKAKIPLIASDTS----SVKEGALAALG---------VDYKDLGKQTGEMVVKILK 278 (322)
T ss_pred HHHHHHHHHHHHHHhCCCeecCCHH----HHhcCcceeec---------cCHHHHHHHHHHHHHHHHc
Confidence 2 3455688999999999999954 44444332210 13333 2445555677776
No 375
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=24.23 E-value=61 Score=34.83 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=24.2
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCC-eEEEEee
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGH-RVMTIAP 126 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh-~V~vit~ 126 (609)
|||++|... .+|+. +|.+|+++|| +|+|+=.
T Consensus 1 ~~V~IiGgG------iaGla-----~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 1 LRVAIIGGG------IAGVA-----LALNLCKHSHLNVQLFEA 32 (414)
T ss_pred CeEEEECCC------HHHHH-----HHHHHHhcCCCCEEEEec
Confidence 789998854 36666 8888999996 9988754
No 376
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.06 E-value=61 Score=30.00 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=24.0
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
.||.|..-..+++.|.++||+|++++.+.
T Consensus 4 ~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 4 FGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp ETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred ECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 46666666779999999999999999773
No 377
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=23.94 E-value=8.5e+02 Score=25.47 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=50.4
Q ss_pred HHHHHhCCCCCCCCcEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC----hhhHHHHHHHHHhCCCceEEEee
Q 007300 387 ALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK----KPMEKQLEQLEILYPEKARGVAK 462 (609)
Q Consensus 387 ~~~~~~gl~~~~~~~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~----~~~~~~l~~l~~~~~~~v~~~~~ 462 (609)
.+++.+|-- +...|.|+|-+.. .=..-++.++..+ ++.+.+++... +.+.+..+++....+.++...
T Consensus 145 Ti~e~~g~l---~g~~va~vGd~~~-~v~~Sl~~~~~~~---g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~-- 215 (331)
T PRK02102 145 TMKEHFGPL---KGLKLAYVGDGRN-NMANSLMVGGAKL---GMDVRICAPKELWPEEELVALAREIAKETGAKITIT-- 215 (331)
T ss_pred HHHHHhCCC---CCCEEEEECCCcc-cHHHHHHHHHHHc---CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEE--
Confidence 345555522 3368999998742 2455667777666 78999999743 223334445555555433321
Q ss_pred cChHHHHHHHHhCcEEEecC
Q 007300 463 FNIPLAHMIIAGADFILIPS 482 (609)
Q Consensus 463 ~~~~~~~~~l~~aDv~v~pS 482 (609)
..+...+..||++....
T Consensus 216 ---~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 216 ---EDPEEAVKGADVIYTDV 232 (331)
T ss_pred ---cCHHHHhCCCCEEEEcC
Confidence 22335799999988853
No 378
>PLN02206 UDP-glucuronate decarboxylase
Probab=23.90 E-value=75 Score=34.71 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=25.1
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEe
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit 125 (609)
+.|||++. ||.|-+=..|++.|.++||+|.++.
T Consensus 118 ~~~kILVT----------GatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVT----------GGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEE----------CcccHHHHHHHHHHHHCcCEEEEEe
Confidence 46897754 5555555678999999999998875
No 379
>PLN00198 anthocyanidin reductase; Provisional
Probab=23.89 E-value=96 Score=32.10 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=19.3
Q ss_pred chHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 101 GGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 101 GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||.|-.=..|+++|.++||+|.+++..
T Consensus 16 G~~GfIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 16 GGTGFLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred CCchHHHHHHHHHHHHCCCEEEEEECC
Confidence 344444456899999999999877644
No 380
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=23.86 E-value=2.9e+02 Score=29.17 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=73.4
Q ss_pred eccccccCHHHHHHHHhhcccCCeEEEEEeCCCh---hhHHHHHHHHHhC-CCceEEEeecChHHHHH--HHHhCcEEEe
Q 007300 407 GRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK---PMEKQLEQLEILY-PEKARGVAKFNIPLAHM--IIAGADFILI 480 (609)
Q Consensus 407 Grl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~~---~~~~~l~~l~~~~-~~~v~~~~~~~~~~~~~--~l~~aDv~v~ 480 (609)
|++....--+.+.+++.++.+.+-+++++|.+-. .....+..+..++ |+++...+--....+-. =++.+....+
T Consensus 30 ~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pv 109 (355)
T PTZ00182 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPI 109 (355)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 4544444445666677766555556666665432 1244577888888 67665544333332221 1233333333
Q ss_pred cC-CCCCCcHHHHH-----H-HH-------cCCceEEcCCCCcccccccCcceeEec--ccccccccCCCCCHHHHHHHH
Q 007300 481 PS-RFEPCGLIQLH-----A-MR-------YGTVPIVASTGGLVDTVEEGFTGFQMG--SFSVDCEAVDPVDVAAVSTTV 544 (609)
Q Consensus 481 pS-~~E~~gl~~lE-----A-ma-------~G~PvI~s~~gg~~e~i~~~~~G~l~~--~~~~~~~~v~~~d~~~la~~I 544 (609)
.. .+-.|-.-.+| + .. ..+|+|....+|....-.....+-+-+ .--++..++.|.|+.++...+
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHH
Confidence 22 23445444444 2 21 368888765443321110000000000 011244456999999999999
Q ss_pred HHHHHhh
Q 007300 545 RRALATY 551 (609)
Q Consensus 545 ~~ll~~~ 551 (609)
+.++++.
T Consensus 190 ~~a~~~~ 196 (355)
T PTZ00182 190 KAAIRDP 196 (355)
T ss_pred HHHHhCC
Confidence 9999753
No 381
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=23.80 E-value=1.1e+02 Score=30.18 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=31.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+|+.|... + ..|=.+.+..|++.|.++|++|-++-+.
T Consensus 1 m~vi~ivG~--~---gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF--K---DSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC--C---CChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 787777753 2 5788889999999999999999999754
No 382
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.76 E-value=79 Score=35.01 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.5
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEe
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit 125 (609)
|+.|+|++|..- .||+. -|..|+++|++|.|+=
T Consensus 1 ~~~~dvvVIGaG------~~GL~-----aAa~LA~~G~~V~VlE 33 (487)
T COG1233 1 MPMYDVVVIGAG------LNGLA-----AAALLARAGLKVTVLE 33 (487)
T ss_pred CCCccEEEECCC------hhHHH-----HHHHHHhCCCEEEEEE
Confidence 456889999864 47776 6677999999999987
No 383
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.59 E-value=4e+02 Score=21.63 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=57.4
Q ss_pred EEEeCCChhhHHHHHHHHHhCCCce-EEEeecChHHHHHHHH--hCcEEEecCCCC-CCcHHHHHHHH---cCCceEE-c
Q 007300 433 IVLGTGKKPMEKQLEQLEILYPEKA-RGVAKFNIPLAHMIIA--GADFILIPSRFE-PCGLIQLHAMR---YGTVPIV-A 504 (609)
Q Consensus 433 vivG~g~~~~~~~l~~l~~~~~~~v-~~~~~~~~~~~~~~l~--~aDv~v~pS~~E-~~gl~~lEAma---~G~PvI~-s 504 (609)
+|+.+ .+...+.++.+....+ + .....-+.+.+...+. ..|++++-...+ .-|+.+++.+. ..+|+|+ |
T Consensus 2 livd~-~~~~~~~l~~~l~~~~--~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 2 LIVDD-DPEIRELLEKLLERAG--YEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEES-SHHHHHHHHHHHHHTT--EEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred EEEEC-CHHHHHHHHHHHHhCC--CCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEec
Confidence 34443 3345555655555444 3 2222224444444443 357888776653 45656665554 3666654 3
Q ss_pred CCCC---cccccccCcceeEecccccccccCCCCCHHHHHHHHH
Q 007300 505 STGG---LVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVR 545 (609)
Q Consensus 505 ~~gg---~~e~i~~~~~G~l~~~~~~~~~~v~~~d~~~la~~I~ 545 (609)
+... ..+.++-|..|++. .|-+.+++.++|+
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~----------kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLS----------KPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEE----------SSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEE----------CCCCHHHHHHhhC
Confidence 3322 34556678899987 8899999998874
No 384
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=23.52 E-value=87 Score=33.55 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=26.8
Q ss_pred CceEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEe
Q 007300 84 GLNILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit 125 (609)
.++|+-|.+. .||+|. .+.+|+.+|+.+|++|-+|=
T Consensus 105 ~~~vIai~n~------KGGVGKTT~a~nLA~~LA~~G~rVLlID 142 (388)
T PRK13705 105 FPPVIGVAAH------KGGVYKTSVSVHLAQDLALKGLRVLLVE 142 (388)
T ss_pred CCeEEEEECC------CCCchHHHHHHHHHHHHHhcCCCeEEEc
Confidence 4566655543 577765 45789999999999998874
No 385
>PRK07538 hypothetical protein; Provisional
Probab=23.52 E-value=65 Score=34.62 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=24.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+|++|... .+|+. +|.+|+++|++|+|+=..
T Consensus 1 ~dV~IVGaG------~aGl~-----~A~~L~~~G~~v~v~E~~ 32 (413)
T PRK07538 1 MKVLIAGGG------IGGLT-----LALTLHQRGIEVVVFEAA 32 (413)
T ss_pred CeEEEECCC------HHHHH-----HHHHHHhCCCcEEEEEcC
Confidence 788888853 25665 777899999999888643
No 386
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.44 E-value=3e+02 Score=25.53 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=43.4
Q ss_pred ccCHHHHHHHHhhcccC--CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEec
Q 007300 412 QKGSDILAAAIPHFIKE--NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIP 481 (609)
Q Consensus 412 ~Kg~~~ll~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~p 481 (609)
.=.+.+.++|+..+..+ +.-+++-|+++ +...+.++... +..|...+ ........+.++||-|+.-
T Consensus 88 ~~Dv~laIDame~~~~~~iD~~vLvSgD~D--F~~Lv~~lre~-G~~V~v~g-~~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 88 DVDVRMAVEAMELIYNPNIDAVALVTRDAD--FLPVINKAKEN-GKETIVIG-AEPGFSTALQNSADIAIIL 155 (160)
T ss_pred cccHHHHHHHHHHhccCCCCEEEEEeccHh--HHHHHHHHHHC-CCEEEEEe-CCCCChHHHHHhcCeEEeC
Confidence 34578899999988554 44455556666 77777777755 65566555 2333344588999987753
No 387
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=23.18 E-value=1.2e+02 Score=28.26 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=32.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYD 129 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~ 129 (609)
|+|+-|+.+ +.+|=.+.+..|.+.|.++||+|-++-....
T Consensus 2 ~~Il~ivG~-----k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGY-----KNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEec-----CCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 677777653 3578888999999999999999999986644
No 388
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=23.13 E-value=1.1e+02 Score=29.96 Aligned_cols=33 Identities=27% Similarity=0.626 Sum_probs=23.0
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+|++++. +||+|. .+++.|.++|++|.+++.+
T Consensus 1 ~~vlItGa-------sg~iG~---~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 1 MIVLVTGA-------TAGFGE---CITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CEEEEECC-------CchHHH---HHHHHHHHCCCEEEEEECC
Confidence 56655543 366664 4688899999999887654
No 389
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=23.04 E-value=94 Score=33.20 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=25.6
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.++|++|+.. | +|+. +|.+|++.|++|+|+=..
T Consensus 18 ~~dV~IvGaG--~----aGl~-----~A~~L~~~G~~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGG--I----VGLT-----LAAALKDSGLRIALIEAQ 50 (415)
T ss_pred ccCEEEECcC--H----HHHH-----HHHHHhcCCCEEEEEecC
Confidence 4789999853 2 5655 788899999999998654
No 390
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=23.00 E-value=1.3e+02 Score=30.21 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=29.9
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+.|++.|++. .| .-|-.+...+|+.+|++.|++|.+|=..
T Consensus 102 ~~~vi~vts~-~~---g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 102 GRKALAVVSA-KS---GEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCeEEEEECC-CC---CCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4566666543 12 4578888999999999999999888543
No 391
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=22.99 E-value=88 Score=32.54 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=24.3
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++|+. |.+| ..++..|++.||+|+++...
T Consensus 3 mkI~IiG~--------G~mG---~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGA--------GSIG---CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECC--------CHHH---HHHHHHHHhcCCcEEEEecH
Confidence 89999874 4444 33777899999999998753
No 392
>PRK06182 short chain dehydrogenase; Validated
Probab=22.97 E-value=1.2e+02 Score=30.20 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=19.0
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+||+|. .+++.|.++||+|.++..+
T Consensus 12 sggiG~---~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 12 SSGIGK---ATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CChHHH---HHHHHHHHCCCEEEEEeCC
Confidence 466664 4788899999999877654
No 393
>PRK04148 hypothetical protein; Provisional
Probab=22.75 E-value=1.1e+02 Score=27.55 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=22.7
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
++||+.|+..+ | ..++..|++.||+|+.+=.+
T Consensus 17 ~~kileIG~Gf-------G-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIGF-------Y-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEecC-------C-----HHHHHHHHHCCCEEEEEECC
Confidence 47888887431 1 23678889999999887644
No 394
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=22.68 E-value=3.3e+02 Score=29.14 Aligned_cols=82 Identities=22% Similarity=0.148 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecC--------hHHHHHHHHhCcEEEe--cCCC----CCC---cHH
Q 007300 428 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFN--------IPLAHMIIAGADFILI--PSRF----EPC---GLI 490 (609)
Q Consensus 428 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~--------~~~~~~~l~~aDv~v~--pS~~----E~~---gl~ 490 (609)
.+-.+-|+|-|. .-..+.+....++-++..+-... ...+.++++.||++++ |..- +.. +-.
T Consensus 115 ~gktvGIIG~G~--IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~ 192 (381)
T PRK00257 115 AERTYGVVGAGH--VGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA 192 (381)
T ss_pred CcCEEEEECCCH--HHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH
Confidence 356788999887 66666666666665555432211 1134568999998765 4333 233 445
Q ss_pred HHHHHHcCCceEEcCCCCccc
Q 007300 491 QLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 491 ~lEAma~G~PvI~s~~gg~~e 511 (609)
.++.|.-|..+|-+..|++.+
T Consensus 193 ~l~~mk~gailIN~aRG~vVd 213 (381)
T PRK00257 193 FLASLRPGAWLINASRGAVVD 213 (381)
T ss_pred HHhcCCCCeEEEECCCCcccC
Confidence 899999999999999888665
No 395
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=22.63 E-value=71 Score=25.28 Aligned_cols=24 Identities=33% Similarity=0.239 Sum_probs=20.4
Q ss_pred HHHhhchhHHHHhCCCeEEEEeec
Q 007300 104 GDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 104 ~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|..-.++|..|++.|.+|+++...
T Consensus 8 G~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 8 GFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CHHHHHHHHHHHHhCcEEEEEecc
Confidence 445667999999999999999976
No 396
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=22.50 E-value=1.3e+02 Score=28.79 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=27.4
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHh-CCCeEEEEeec
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAA-NGHRVMTIAPR 127 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~-~Gh~V~vit~~ 127 (609)
.|||+.|+..- ..-|-.+...+||.+|++ .|++|.+|=..
T Consensus 34 ~~~vi~v~s~k----gG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSL----PGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCC----CCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46665555421 123556677889999997 69999888665
No 397
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=22.47 E-value=1.2e+02 Score=30.89 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=30.0
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
|.+|||+++.....+. .--.-......+++|.+.||+|..+-.
T Consensus 1 ~~~~~i~vl~gg~s~e--~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPE--REVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCc--hHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 4578999998654342 223334566789999999999977754
No 398
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=22.46 E-value=2.1e+02 Score=32.12 Aligned_cols=44 Identities=32% Similarity=0.549 Sum_probs=32.8
Q ss_pred HHHHHHhCcEEEe--cCCCCCC---cHHHHHHHHcCCceEEcCCCCccc
Q 007300 468 AHMIIAGADFILI--PSRFEPC---GLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 468 ~~~~l~~aDv~v~--pS~~E~~---gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.++++.||++++ |..-|.. +-..++.|.-|.-+|-+..|++.+
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 235 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIID 235 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeC
Confidence 5578999999776 4333443 445888999999889998888665
No 399
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=22.26 E-value=2.6e+02 Score=28.02 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=29.2
Q ss_pred HHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCc
Q 007300 470 MIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGL 509 (609)
Q Consensus 470 ~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~ 509 (609)
+++..+|+++..+..+..--...+++..|+.+++.+.|.+
T Consensus 57 ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl 96 (265)
T PRK13304 57 ELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGAL 96 (265)
T ss_pred HHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHh
Confidence 3458899999876544444446678889999999877654
No 400
>PRK06703 flavodoxin; Provisional
Probab=22.24 E-value=1.3e+02 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=29.8
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||+++-.. .+|....+...++..|...|++|.++-..
T Consensus 2 mkv~IiY~S-----~tGnT~~iA~~ia~~l~~~g~~v~~~~~~ 39 (151)
T PRK06703 2 AKILIAYAS-----MSGNTEDIADLIKVSLDAFDHEVVLQEMD 39 (151)
T ss_pred CeEEEEEEC-----CCchHHHHHHHHHHHHHhcCCceEEEehh
Confidence 566666532 36999999999999999999999887643
No 401
>PRK09004 FMN-binding protein MioC; Provisional
Probab=22.15 E-value=1.1e+02 Score=27.65 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.5
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEe
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit 125 (609)
+|-...+...|+..+.++|++|.++.
T Consensus 12 tGnae~~A~~l~~~~~~~g~~~~~~~ 37 (146)
T PRK09004 12 LGGAEYVADHLAEKLEEAGFSTETLH 37 (146)
T ss_pred chHHHHHHHHHHHHHHHcCCceEEec
Confidence 78899999999999999999998864
No 402
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=22.04 E-value=1.2e+02 Score=23.21 Aligned_cols=66 Identities=11% Similarity=0.029 Sum_probs=45.7
Q ss_pred CCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcC
Q 007300 428 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVAS 505 (609)
Q Consensus 428 ~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~ 505 (609)
.+..|.+ +.....-.+.++++...+++.+.. .+-...+.+|.... ..-.....+|...|+|+|..+
T Consensus 7 ~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v~~----------~~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 7 EGCTFCI-SGFDSDEREELEQLIKKHGGTVSN----------SFSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp TTEEEEE-SSTSSSHHHHHHHHHHHTTEEEES----------SSSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEETH
T ss_pred CCEEEEE-ccCCCCCHHHHHHHHHHcCCEEEe----------ecccCcEEEEeCCC-CCccHHHHHHHHCCCeEecHH
Confidence 4777888 444455777888888888865521 13556777776554 345666899999999998754
No 403
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=21.94 E-value=6.3e+02 Score=24.76 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=56.8
Q ss_pred cEEEEEeccccccCHHHHHHHHhhcccCCeEEEEEeCCC-hhhHHHHHHHHHhCCCceE-EEeecChHH-HHHHHHh-Cc
Q 007300 401 PVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK-KPMEKQLEQLEILYPEKAR-GVAKFNIPL-AHMIIAG-AD 476 (609)
Q Consensus 401 ~~i~~iGrl~~~Kg~~~ll~a~~~l~~~~~~lvivG~g~-~~~~~~l~~l~~~~~~~v~-~~~~~~~~~-~~~~l~~-aD 476 (609)
|++.+-.+-++.+.++.|.+++..+ ++.-++.|+-. ......+++++.+.+.++. ...+.++.. +..++.. -+
T Consensus 61 ~l~~~~~~g~~e~eve~L~~~l~~l---~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~ 137 (223)
T COG2102 61 PLVTFDTSGEEEREVEELKEALRRL---KVDGIVAGAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFE 137 (223)
T ss_pred ceEEEecCccchhhHHHHHHHHHhC---cccEEEEchhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCe
Confidence 4565666667888999999999999 47888999864 4566788889988875332 222334433 3444443 77
Q ss_pred EEEecCCCCCCc
Q 007300 477 FILIPSRFEPCG 488 (609)
Q Consensus 477 v~v~pS~~E~~g 488 (609)
+.|+..-.++++
T Consensus 138 ~~Iv~Vsa~gL~ 149 (223)
T COG2102 138 AIIVAVSAEGLD 149 (223)
T ss_pred EEEEEEeccCCC
Confidence 777765555544
No 404
>PRK07588 hypothetical protein; Provisional
Probab=21.91 E-value=75 Score=33.77 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.4
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+|++|... .+|+. +|.+|+++|++|+|+=..
T Consensus 1 ~~V~IVGgG------~aGl~-----~A~~L~~~G~~v~v~E~~ 32 (391)
T PRK07588 1 MKVAISGAG------IAGPT-----LAYWLRRYGHEPTLIERA 32 (391)
T ss_pred CeEEEECcc------HHHHH-----HHHHHHHCCCceEEEeCC
Confidence 688888753 25555 788899999999888654
No 405
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=21.81 E-value=7.7e+02 Score=24.19 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHhhcccCCeEEEEEeCCChhhHHHHHHHHHhCCCceEEEe-ecChHHHHHHHHhCcEEEecCCCCCC-cHHHHHH
Q 007300 417 ILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVA-KFNIPLAHMIIAGADFILIPSRFEPC-GLIQLHA 494 (609)
Q Consensus 417 ~ll~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~-~~~~~~~~~~l~~aDv~v~pS~~E~~-gl~~lEA 494 (609)
...+-+..|.+.+.++.++... ....+.++... + ++...- .|.. ..+.++++++..+.-+.. -.+.-+|
T Consensus 36 VA~RK~~~Ll~~gA~VtVVap~---i~~el~~l~~~-~-~i~~~~r~~~~----~dl~g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 36 AAFIKGKTFLKKGCYVYILSKK---FSKEFLDLKKY-G-NLKLIKGNYDK----EFIKDKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred HHHHHHHHHHhCCCEEEEEcCC---CCHHHHHHHhC-C-CEEEEeCCCCh----HHhCCCcEEEECCCCHHHHHHHHHHH
Confidence 4444455555556777777754 23344455432 2 243332 2332 246788887777654333 3445566
Q ss_pred HHcCCceEEcCCCCcccccc
Q 007300 495 MRYGTVPIVASTGGLVDTVE 514 (609)
Q Consensus 495 ma~G~PvI~s~~gg~~e~i~ 514 (609)
-+.|.+|.+.+.....+++-
T Consensus 107 ~~~~~lvn~vd~p~~~dFi~ 126 (223)
T PRK05562 107 DRLYKLYIDCSDYKKGLCII 126 (223)
T ss_pred HHcCCeEEEcCCcccCeEEe
Confidence 67799998887665555443
No 406
>PLN03007 UDP-glucosyltransferase family protein
Probab=21.80 E-value=1.1e+02 Score=33.72 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=29.0
Q ss_pred CceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 84 GLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 84 ~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
+++|+++.. |- . |=-.=+.+|++.|+.+|++|+++++..
T Consensus 5 ~~hVvlvp~---pa--~-GHi~P~L~LAk~L~~rG~~VT~vtt~~ 43 (482)
T PLN03007 5 KLHILFFPF---MA--H-GHMIPTLDMAKLFSSRGAKSTILTTPL 43 (482)
T ss_pred CcEEEEECC---Cc--c-ccHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 468888873 31 2 333456789999999999999999763
No 407
>PRK04155 chaperone protein HchA; Provisional
Probab=21.55 E-value=2e+02 Score=29.39 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=27.2
Q ss_pred CCceEEEEEeecCCcc-ccch---HHHHhhc---hhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWS-KTGG---LGDVLGG---LPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~-~~GG---~~~~~~~---La~aL~~~Gh~V~vit~~ 127 (609)
-+||||+|.+...-.. ..|- .|....+ -...|.+.|++|+++++.
T Consensus 48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~ 99 (287)
T PRK04155 48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLS 99 (287)
T ss_pred CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecC
Confidence 3569999987643321 1121 2222222 235577899999999986
No 408
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=21.51 E-value=96 Score=32.39 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=24.1
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
.+|||++.+ |.|..-..|+++|.++|++|.++..
T Consensus 9 ~~~~vLVtG----------~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTG----------ATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred CCCEEEEEC----------CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 468877654 3344445688899999999987653
No 409
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=21.49 E-value=83 Score=32.46 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEe
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit 125 (609)
|||++++. +|++| ..|++.|.++||+|.++.
T Consensus 1 m~vlVtGa-------tG~iG---~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGG-------SGYIG---SHTCVQLLQNGHDVVILD 31 (338)
T ss_pred CeEEEECC-------CChHH---HHHHHHHHHCCCeEEEEe
Confidence 67665542 24444 557888999999998875
No 410
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=21.49 E-value=83 Score=33.38 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=25.2
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+..+|++|..- | +|+. +|.+|+++|++|+++=..
T Consensus 2 ~~~dv~IvGgG--~----aGl~-----~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 2 NKYDIAVVGGG--M----VGAA-----TALGFAKQGRSVAVIEGG 35 (384)
T ss_pred CcccEEEECcC--H----HHHH-----HHHHHHhCCCcEEEEcCC
Confidence 33578888853 2 5655 788899999999998743
No 411
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=21.43 E-value=1.5e+02 Score=26.60 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=22.7
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
..|....+.+||..|++.|++|.++-...
T Consensus 11 g~G~t~~a~~lA~~la~~~~~Vllid~~~ 39 (157)
T PF13614_consen 11 GVGKTTLALNLAAALARKGKKVLLIDFDF 39 (157)
T ss_dssp TSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 46888899999999999999988887653
No 412
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.32 E-value=4.3e+02 Score=22.83 Aligned_cols=38 Identities=11% Similarity=0.002 Sum_probs=18.9
Q ss_pred EEEEEeccc-cccCHHHHHHHHhhcccCCeEEEEEeCCC
Q 007300 402 VIGFIGRLE-EQKGSDILAAAIPHFIKENVQIIVLGTGK 439 (609)
Q Consensus 402 ~i~~iGrl~-~~Kg~~~ll~a~~~l~~~~~~lvivG~g~ 439 (609)
.|+..+... .......+++.+++...+++.+++.|..+
T Consensus 53 ~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 53 VIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred EEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 444444443 23334555555555422466666666555
No 413
>PRK00124 hypothetical protein; Validated
Probab=21.32 E-value=2.2e+02 Score=26.08 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=56.6
Q ss_pred EEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCCccc
Q 007300 432 IIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 511 (609)
Q Consensus 432 lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg~~e 511 (609)
+.|=++.=+ ..+.+.+.+.+++..+.++..++.......-......++++-++.--..++|...-|=-||+.|.|=...
T Consensus 3 I~VDADACP-Vk~~i~r~a~r~~i~v~~Vas~n~~~~~~~~~~v~~v~V~~g~D~AD~~Iv~~~~~gDiVIT~Di~LAa~ 81 (151)
T PRK00124 3 IYVDADACP-VKDIIIRVAERHGIPVTLVASFNHFLRVPYSPFIRTVYVDAGFDAADNEIVQLAEKGDIVITQDYGLAAL 81 (151)
T ss_pred EEEECCCCc-HHHHHHHHHHHHCCeEEEEEeCCcccCCCCCCceEEEEeCCCCChHHHHHHHhCCCCCEEEeCCHHHHHH
Confidence 444454333 7788888888888777777666554321111224557778777877888999999998888888776556
Q ss_pred ccccCc
Q 007300 512 TVEEGF 517 (609)
Q Consensus 512 ~i~~~~ 517 (609)
++..|.
T Consensus 82 ~l~Kga 87 (151)
T PRK00124 82 ALEKGA 87 (151)
T ss_pred HHHCCC
Confidence 666543
No 414
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=21.28 E-value=2.7e+02 Score=27.45 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=44.4
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHHHHHcCCceEEcCCCC
Q 007300 429 NVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGG 508 (609)
Q Consensus 429 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lEAma~G~PvI~s~~gg 508 (609)
+++++++=+.. +++.+++....+.... ..+++++...|+++=..-.|.----..+++-.|+.+|+-++|.
T Consensus 25 ~~e~v~v~D~~---~ek~~~~~~~~~~~~~-------s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 25 DFELVAVYDRD---EEKAKELEASVGRRCV-------SDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred ceeEEEEecCC---HHHHHHHHhhcCCCcc-------ccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 56677666544 3334444433332111 3344566888888855444443334677888999999999998
Q ss_pred ccc
Q 007300 509 LVD 511 (609)
Q Consensus 509 ~~e 511 (609)
+.|
T Consensus 95 Lad 97 (255)
T COG1712 95 LAD 97 (255)
T ss_pred ccC
Confidence 774
No 415
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=21.26 E-value=67 Score=29.59 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 83 VGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 83 ~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
++.||++|+ .|.+....++.|.+.|++|+||+|.
T Consensus 12 ~~~~vlVvG-----------GG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIG-----------GGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEEC-----------CCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 456676665 2345677889999999999999765
No 416
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=21.11 E-value=2e+02 Score=32.46 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=22.8
Q ss_pred eEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 86 NILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+++|+.- .||+|. .+++.|.++||+|.++...
T Consensus 81 KvVLVTGA------TGgIG~---aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 81 DLAFVAGA------TGKVGS---RTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CEEEEECC------CCHHHH---HHHHHHHHCCCeEEEEeCC
Confidence 55566532 466664 4667889999999888754
No 417
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=21.07 E-value=92 Score=30.55 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=27.6
Q ss_pred eEEEEEeecCCccccchHHH--HhhchhHHHHhCCCeEEEEeec
Q 007300 86 NILFVGTEVAPWSKTGGLGD--VLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 86 kIl~vs~~~~P~~~~GG~~~--~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+|..|++. .||+|. ...+|..+|+++|++|.++-..
T Consensus 3 ~iIVvTSG------KGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSG------KGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecC------CCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 56666653 577764 5567999999999999988765
No 418
>PRK08177 short chain dehydrogenase; Provisional
Probab=21.05 E-value=1e+02 Score=29.65 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=23.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||.++|+.- .||+|. .+++.|+++|++|.+++..
T Consensus 1 ~k~vlItG~------sg~iG~---~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGA------SRGLGL---GLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCC------CchHHH---HHHHHHHhCCCEEEEEeCC
Confidence 455555532 356654 4688899999999888755
No 419
>PRK08703 short chain dehydrogenase; Provisional
Probab=21.02 E-value=1.1e+02 Score=29.81 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=18.8
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
.||+|.. +++.|.++|++|.++..+
T Consensus 15 sggiG~~---la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 15 SQGLGEQ---VAKAYAAAGATVILVARH 39 (239)
T ss_pred CCcHHHH---HHHHHHHcCCEEEEEeCC
Confidence 4666644 688899999999777654
No 420
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=20.94 E-value=7.8e+02 Score=27.48 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=45.0
Q ss_pred HHHHHhCcEEEecCCCCC--CcH----HHHHHHHcCCce--EEcCCCCcccccccC-----cceeEecccccccccCCCC
Q 007300 469 HMIIAGADFILIPSRFEP--CGL----IQLHAMRYGTVP--IVASTGGLVDTVEEG-----FTGFQMGSFSVDCEAVDPV 535 (609)
Q Consensus 469 ~~~l~~aDv~v~pS~~E~--~gl----~~lEAma~G~Pv--I~s~~gg~~e~i~~~-----~~G~l~~~~~~~~~~v~~~ 535 (609)
.+.++.+|+++-+...-+ .|. ..++.|.-|..+ |+++.||..|..+.+ .+|..+ .-.++
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~--------~gv~n 313 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKV--------IGYTD 313 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEE--------EeeCC
Confidence 345778999988775533 442 366777777766 678889988887443 233433 11334
Q ss_pred CHHHHHHHHHHHHHh
Q 007300 536 DVAAVSTTVRRALAT 550 (609)
Q Consensus 536 d~~~la~~I~~ll~~ 550 (609)
-+..++..-.+++.+
T Consensus 314 lPs~~p~~AS~l~s~ 328 (511)
T TIGR00561 314 LPSRLPTQSSQLYGT 328 (511)
T ss_pred ccccCHHHHHHHHHH
Confidence 455555555555554
No 421
>PRK05723 flavodoxin; Provisional
Probab=20.81 E-value=1.3e+02 Score=27.43 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=28.8
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEe
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIA 125 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit 125 (609)
|||.++-. +.+|-.+.+...|+..|.++|++|.++.
T Consensus 1 ~~i~I~yg-----S~tG~ae~~A~~la~~l~~~g~~~~~~~ 36 (151)
T PRK05723 1 MKVAILSG-----SVYGTAEEVARHAESLLKAAGFEAWHNP 36 (151)
T ss_pred CeEEEEEE-----cCchHHHHHHHHHHHHHHHCCCceeecC
Confidence 67777733 2378899999999999999999998754
No 422
>PRK06953 short chain dehydrogenase; Provisional
Probab=20.69 E-value=94 Score=29.82 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=22.5
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
||.++|+.- .||+| ..+++.|+++|++|.++...
T Consensus 1 ~~~vlvtG~------sg~iG---~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGA------SRGIG---REFVRQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcC------CCchh---HHHHHHHHhCCCEEEEEECC
Confidence 555555532 34444 55788889999999887644
No 423
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=20.67 E-value=1.6e+02 Score=28.10 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=26.8
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|||++|+.. |. +.+=.........+.+.+.|++|+++-..
T Consensus 1 mkIl~I~GS--pr-~~S~t~~l~~~~~~~l~~~g~ev~~idL~ 40 (191)
T PRK10569 1 MRVITLAGS--PR-FPSRSSALLEYAREWLNGLGVEVYHWNLQ 40 (191)
T ss_pred CEEEEEEcC--CC-CCChHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 899999875 42 22333445555666777899999988743
No 424
>PRK07102 short chain dehydrogenase; Provisional
Probab=20.58 E-value=1e+02 Score=29.91 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=18.9
Q ss_pred cchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 100 TGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 100 ~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
+||+| ..+++.|.++|++|.++...
T Consensus 10 s~giG---~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 10 TSDIA---RACARRYAAAGARLYLAARD 34 (243)
T ss_pred CcHHH---HHHHHHHHhcCCEEEEEeCC
Confidence 35555 56888999999999877654
No 425
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=20.57 E-value=1e+02 Score=31.00 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=25.6
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhC---CCeEEEEeecCCC
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAAN---GHRVMTIAPRYDQ 130 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~---Gh~V~vit~~~~~ 130 (609)
||||+.+..-.- .-| +..|.++|.+. |++|+|++|..++
T Consensus 1 M~ILlTNDDGI~---a~G----l~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITNDDGIN---APG----LEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEcCCCCC---CHh----HHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 899998876211 224 44455666553 4799999998654
No 426
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.26 E-value=3.9e+02 Score=22.15 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=44.0
Q ss_pred EEEEeCCC--hhhHHHHHHHHHhCCCceEEEeecChHHHHHHHHhCcEEEecCCCCCCcHHHHH--HHHcCCceEEcC
Q 007300 432 IIVLGTGK--KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH--AMRYGTVPIVAS 505 (609)
Q Consensus 432 lvivG~g~--~~~~~~l~~l~~~~~~~v~~~~~~~~~~~~~~l~~aDv~v~pS~~E~~gl~~lE--Ama~G~PvI~s~ 505 (609)
++++|.|- .-+.+.++++..+.+..+.. ...+..........+|++++.+..- +-..-++ +.-.++||..-+
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v-~~~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~ 78 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEI-EAVPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVID 78 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEE-EEecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcC
Confidence 57788875 34566777777776643322 2334444555678899988877632 2233333 345788887765
No 427
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=20.19 E-value=1.2e+02 Score=30.00 Aligned_cols=43 Identities=28% Similarity=0.278 Sum_probs=29.5
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeecCCC
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPRYDQ 130 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~~~~ 130 (609)
+..++|+.|.+. |++..=| ++.....++++|++|.++|...+.
T Consensus 8 ~~~~~vL~v~aH--PDDe~~g----~ggtla~~~~~G~~V~v~~lT~Ge 50 (237)
T COG2120 8 LDPLRVLVVFAH--PDDEEIG----CGGTLAKLAARGVEVTVVCLTLGE 50 (237)
T ss_pred ccCCcEEEEecC--Ccchhhc----cHHHHHHHHHCCCeEEEEEccCCc
Confidence 446899999984 6543222 223445568999999999977543
No 428
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=20.13 E-value=71 Score=30.96 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=21.6
Q ss_pred chHHHHhhchhHHHHhCCCeEEEEeecC
Q 007300 101 GGLGDVLGGLPPALAANGHRVMTIAPRY 128 (609)
Q Consensus 101 GG~~~~~~~La~aL~~~Gh~V~vit~~~ 128 (609)
+|.|..=..|+..|++.||+|++-+.+.
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 4445555669999999999998887663
No 429
>PRK09126 hypothetical protein; Provisional
Probab=20.12 E-value=88 Score=33.14 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=25.1
Q ss_pred CCCceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEee
Q 007300 82 GVGLNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAP 126 (609)
Q Consensus 82 ~~~MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~ 126 (609)
|+..+|++|... | +|+. +|.+|+++|++|+|+=-
T Consensus 1 ~~~~dviIvGgG--~----aGl~-----~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 1 MMHSDIVVVGAG--P----AGLS-----FARSLAGSGLKVTLIER 34 (392)
T ss_pred CCcccEEEECcC--H----HHHH-----HHHHHHhCCCcEEEEeC
Confidence 445678888753 2 5655 78889999999988753
No 430
>PRK06101 short chain dehydrogenase; Provisional
Probab=20.10 E-value=1.1e+02 Score=29.75 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=23.0
Q ss_pred ceEEEEEeecCCccccchHHHHhhchhHHHHhCCCeEEEEeec
Q 007300 85 LNILFVGTEVAPWSKTGGLGDVLGGLPPALAANGHRVMTIAPR 127 (609)
Q Consensus 85 MkIl~vs~~~~P~~~~GG~~~~~~~La~aL~~~Gh~V~vit~~ 127 (609)
|+.++|+.- +||+| ..+++.|+++|++|.++..+
T Consensus 1 ~~~vlItGa------s~giG---~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 1 MTAVLITGA------TSGIG---KQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred CcEEEEEcC------CcHHH---HHHHHHHHhCCCEEEEEECC
Confidence 455555532 35655 56788899999999877643
Done!