Query 007301
Match_columns 609
No_of_seqs 227 out of 1407
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 21:42:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 8E-215 2E-219 1697.3 46.5 526 82-608 8-534 (582)
2 PRK13529 malate dehydrogenase; 100.0 2E-202 5E-207 1632.0 47.8 507 99-608 12-527 (563)
3 PTZ00317 NADP-dependent malic 100.0 5E-202 1E-206 1628.5 48.4 509 98-608 13-526 (559)
4 PLN03129 NADP-dependent malic 100.0 9E-202 2E-206 1631.8 48.7 508 101-608 39-546 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 9E-112 2E-116 892.6 27.4 392 137-608 1-396 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 8E-107 2E-111 911.5 31.5 348 184-608 34-398 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 3E-106 7E-111 910.6 31.7 347 184-608 38-402 (763)
8 PRK07232 bifunctional malic en 100.0 7E-105 2E-109 896.1 32.6 347 184-608 30-394 (752)
9 PF03949 Malic_M: Malic enzyme 100.0 1.6E-94 3.5E-99 727.1 18.4 248 359-608 1-251 (255)
10 cd00762 NAD_bind_malic_enz NAD 100.0 5.3E-92 1.1E-96 708.3 25.3 248 359-608 1-251 (254)
11 cd05312 NAD_bind_1_malic_enz N 100.0 2E-91 4.3E-96 712.4 25.4 248 359-608 1-250 (279)
12 PF00390 malic: Malic enzyme, 100.0 5.1E-84 1.1E-88 622.4 9.2 182 168-349 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.4E-57 3.1E-62 450.8 21.8 220 359-608 1-223 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.8 3.5E-08 7.6E-13 84.2 11.6 86 361-498 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.6 0.0023 5.1E-08 70.4 17.1 160 304-501 105-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.2 0.0014 3.1E-08 71.4 9.6 121 360-501 158-280 (417)
17 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0033 7.1E-08 65.8 9.7 136 339-501 139-276 (311)
18 TIGR00936 ahcY adenosylhomocys 97.0 0.031 6.8E-07 61.4 17.4 127 351-511 156-293 (406)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 96.9 0.0091 2E-07 60.1 11.6 133 362-517 2-143 (217)
20 cd00401 AdoHcyase S-adenosyl-L 96.9 0.016 3.6E-07 63.6 13.9 129 351-513 163-302 (413)
21 PLN02477 glutamate dehydrogena 96.9 0.028 6.1E-07 61.8 15.6 186 305-513 112-324 (410)
22 PRK00045 hemA glutamyl-tRNA re 96.8 0.0043 9.3E-08 67.6 9.0 120 361-501 161-283 (423)
23 cd01080 NAD_bind_m-THF_DH_Cycl 96.8 0.011 2.4E-07 57.4 10.5 90 368-501 29-119 (168)
24 PF01488 Shikimate_DH: Shikima 96.7 0.0014 3E-08 60.6 3.6 102 379-502 8-113 (135)
25 PLN02494 adenosylhomocysteinas 96.7 0.02 4.4E-07 64.0 13.0 130 351-514 215-355 (477)
26 TIGR02853 spore_dpaA dipicolin 96.7 0.012 2.6E-07 61.4 10.7 138 360-526 128-265 (287)
27 PRK14031 glutamate dehydrogena 96.7 0.085 1.8E-06 58.8 17.7 180 305-499 134-344 (444)
28 PRK09414 glutamate dehydrogena 96.6 0.096 2.1E-06 58.3 17.3 189 305-513 138-357 (445)
29 PRK14982 acyl-ACP reductase; P 96.3 0.029 6.3E-07 60.3 11.2 114 362-502 134-250 (340)
30 cd01076 NAD_bind_1_Glu_DH NAD( 96.2 0.041 8.8E-07 55.8 10.6 123 360-501 8-140 (227)
31 PLN00203 glutamyl-tRNA reducta 96.2 0.018 4E-07 64.9 8.9 138 340-501 226-372 (519)
32 PTZ00075 Adenosylhomocysteinas 96.0 0.096 2.1E-06 58.8 13.7 122 351-500 215-343 (476)
33 PRK08306 dipicolinate synthase 96.0 0.055 1.2E-06 56.7 10.7 128 365-526 134-266 (296)
34 COG0373 HemA Glutamyl-tRNA red 96.0 0.028 6.1E-07 61.9 8.9 135 338-501 138-277 (414)
35 cd01075 NAD_bind_Leu_Phe_Val_D 95.9 0.043 9.3E-07 54.3 9.4 123 361-513 4-129 (200)
36 PTZ00079 NADP-specific glutama 95.9 0.61 1.3E-05 52.3 19.1 180 305-502 143-358 (454)
37 cd01065 NAD_bind_Shikimate_DH 95.9 0.051 1.1E-06 49.8 9.1 108 368-501 4-120 (155)
38 PRK14192 bifunctional 5,10-met 95.7 0.077 1.7E-06 55.7 10.5 109 361-513 137-250 (283)
39 PRK13940 glutamyl-tRNA reducta 95.6 0.039 8.4E-07 60.7 8.3 132 339-501 142-276 (414)
40 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.17 3.7E-06 52.6 12.5 125 361-502 16-159 (254)
41 PRK14175 bifunctional 5,10-met 95.6 0.078 1.7E-06 55.9 10.1 96 361-500 136-232 (286)
42 PRK14030 glutamate dehydrogena 95.5 0.51 1.1E-05 52.7 16.7 189 305-513 134-357 (445)
43 PRK12549 shikimate 5-dehydroge 95.5 0.042 9.1E-07 57.2 7.6 90 368-474 112-203 (284)
44 cd01078 NAD_bind_H4MPT_DH NADP 95.3 0.092 2E-06 50.8 9.0 54 362-427 7-61 (194)
45 PLN00106 malate dehydrogenase 95.2 0.11 2.4E-06 55.5 9.8 142 368-525 4-165 (323)
46 TIGR01809 Shik-DH-AROM shikima 94.9 0.058 1.2E-06 56.0 6.7 104 351-482 99-209 (282)
47 TIGR00518 alaDH alanine dehydr 94.7 0.098 2.1E-06 56.5 8.1 95 381-499 165-268 (370)
48 PRK00676 hemA glutamyl-tRNA re 94.4 0.21 4.5E-06 54.0 9.5 122 339-502 136-265 (338)
49 PF00208 ELFV_dehydrog: Glutam 94.4 0.084 1.8E-06 54.2 6.3 130 358-501 6-151 (244)
50 PF03807 F420_oxidored: NADP o 94.4 0.066 1.4E-06 45.6 4.6 94 385-500 1-96 (96)
51 PRK08293 3-hydroxybutyryl-CoA 93.8 0.12 2.6E-06 53.2 6.1 124 384-532 4-149 (287)
52 PF00670 AdoHcyase_NAD: S-aden 93.8 0.37 8.1E-06 47.1 9.1 119 360-512 3-122 (162)
53 PRK08605 D-lactate dehydrogena 93.6 1.4 3E-05 47.0 13.8 226 315-580 59-323 (332)
54 PRK05086 malate dehydrogenase; 93.5 0.38 8.2E-06 50.9 9.4 105 384-501 1-121 (312)
55 PRK10792 bifunctional 5,10-met 93.5 0.72 1.6E-05 48.8 11.3 93 362-498 138-231 (285)
56 TIGR02356 adenyl_thiF thiazole 93.2 0.16 3.5E-06 50.2 5.6 38 379-427 17-54 (202)
57 PF00056 Ldh_1_N: lactate/mala 93.2 0.054 1.2E-06 50.8 2.2 104 385-501 2-121 (141)
58 cd00650 LDH_MDH_like NAD-depen 93.0 0.2 4.4E-06 51.0 6.1 131 386-530 1-149 (263)
59 cd05296 GH4_P_beta_glucosidase 92.8 0.2 4.2E-06 55.3 6.1 126 384-524 1-166 (419)
60 PRK14191 bifunctional 5,10-met 92.7 0.44 9.5E-06 50.4 8.4 83 363-483 137-220 (285)
61 PLN02928 oxidoreductase family 92.3 1.4 3E-05 47.4 11.7 167 360-553 120-314 (347)
62 PRK12548 shikimate 5-dehydroge 92.3 0.38 8.3E-06 50.1 7.2 58 351-427 102-159 (289)
63 PRK12749 quinate/shikimate deh 92.2 0.3 6.6E-06 51.2 6.4 57 352-427 101-157 (288)
64 cd05291 HicDH_like L-2-hydroxy 92.2 0.48 1E-05 49.6 7.8 125 385-526 2-144 (306)
65 cd05212 NAD_bind_m-THF_DH_Cycl 92.1 1.3 2.7E-05 42.2 9.9 90 364-496 9-98 (140)
66 PTZ00325 malate dehydrogenase; 92.1 0.77 1.7E-05 49.1 9.3 106 381-501 6-128 (321)
67 PRK08328 hypothetical protein; 92.0 0.085 1.8E-06 53.3 2.0 119 345-501 7-130 (231)
68 PRK00257 erythronate-4-phospha 91.9 1.4 3E-05 48.4 11.1 170 350-560 80-264 (381)
69 PTZ00082 L-lactate dehydrogena 91.8 0.62 1.3E-05 49.5 8.2 126 382-525 5-154 (321)
70 PRK00066 ldh L-lactate dehydro 91.7 0.39 8.4E-06 50.9 6.6 126 384-526 7-149 (315)
71 TIGR02354 thiF_fam2 thiamine b 91.6 0.28 6E-06 48.8 5.1 108 379-506 17-127 (200)
72 PRK06129 3-hydroxyacyl-CoA deh 91.6 0.59 1.3E-05 48.7 7.7 38 537-574 184-221 (308)
73 cd01079 NAD_bind_m-THF_DH NAD 91.5 1.2 2.6E-05 45.0 9.4 103 364-483 34-147 (197)
74 PRK14027 quinate/shikimate deh 91.4 0.4 8.6E-06 50.2 6.3 58 351-427 103-160 (283)
75 PRK08223 hypothetical protein; 91.3 0.38 8.3E-06 50.9 5.9 125 342-499 4-153 (287)
76 PRK09424 pntA NAD(P) transhydr 91.2 0.83 1.8E-05 51.9 8.9 180 290-508 82-296 (509)
77 PF01210 NAD_Gly3P_dh_N: NAD-d 91.0 0.3 6.5E-06 46.2 4.4 91 385-495 1-101 (157)
78 PRK15438 erythronate-4-phospha 90.9 2.2 4.7E-05 46.8 11.4 117 360-512 93-217 (378)
79 cd00757 ThiF_MoeB_HesA_family 90.8 0.77 1.7E-05 46.1 7.4 38 379-427 17-54 (228)
80 PRK05600 thiamine biosynthesis 90.8 0.55 1.2E-05 51.0 6.7 102 379-496 37-162 (370)
81 PF02826 2-Hacid_dh_C: D-isome 90.7 1 2.3E-05 43.4 7.9 115 374-520 27-147 (178)
82 TIGR02992 ectoine_eutC ectoine 90.6 1.1 2.5E-05 47.4 8.8 115 369-510 117-237 (326)
83 PRK14619 NAD(P)H-dependent gly 90.6 2 4.3E-05 44.9 10.4 33 383-427 4-36 (308)
84 PTZ00117 malate dehydrogenase; 90.6 1.2 2.5E-05 47.3 8.8 127 382-526 4-149 (319)
85 PRK12475 thiamine/molybdopteri 90.4 0.43 9.3E-06 51.2 5.5 39 379-428 20-58 (338)
86 PRK00258 aroE shikimate 5-dehy 90.3 0.66 1.4E-05 47.9 6.5 87 368-474 107-196 (278)
87 PRK14194 bifunctional 5,10-met 90.1 1.8 3.8E-05 46.3 9.6 92 363-498 139-231 (301)
88 COG0334 GdhA Glutamate dehydro 90.1 7 0.00015 43.6 14.4 180 303-502 110-317 (411)
89 PRK14189 bifunctional 5,10-met 90.0 1.2 2.6E-05 47.2 8.3 84 362-483 137-221 (285)
90 PRK08762 molybdopterin biosynt 90.0 0.5 1.1E-05 50.9 5.6 37 380-427 132-168 (376)
91 cd05197 GH4_glycoside_hydrolas 89.7 0.71 1.5E-05 51.1 6.6 124 384-523 1-165 (425)
92 PRK14176 bifunctional 5,10-met 89.7 2 4.2E-05 45.7 9.5 84 362-483 143-227 (287)
93 PRK14178 bifunctional 5,10-met 89.6 1.4 3.1E-05 46.5 8.5 94 361-498 130-224 (279)
94 PRK07688 thiamine/molybdopteri 89.3 0.58 1.3E-05 50.2 5.4 38 379-427 20-57 (339)
95 COG0169 AroE Shikimate 5-dehyd 89.2 0.82 1.8E-05 48.3 6.3 47 369-426 110-158 (283)
96 PRK15076 alpha-galactosidase; 89.2 0.89 1.9E-05 50.4 6.8 129 384-528 2-174 (431)
97 PF00899 ThiF: ThiF family; I 89.0 0.65 1.4E-05 42.5 4.8 35 382-427 1-35 (135)
98 PLN02306 hydroxypyruvate reduc 89.0 5.4 0.00012 43.9 12.5 214 330-580 89-345 (386)
99 PRK06223 malate dehydrogenase; 88.9 0.96 2.1E-05 46.9 6.6 127 384-528 3-148 (307)
100 COG0111 SerA Phosphoglycerate 88.8 2.9 6.4E-05 44.8 10.2 111 351-486 89-224 (324)
101 cd00704 MDH Malate dehydrogena 88.6 1.7 3.7E-05 46.4 8.3 110 385-501 2-129 (323)
102 PRK06130 3-hydroxybutyryl-CoA 88.5 1.7 3.7E-05 45.0 8.1 31 384-426 5-35 (311)
103 PRK09260 3-hydroxybutyryl-CoA 88.4 0.9 2E-05 46.8 5.9 32 384-427 2-33 (288)
104 PRK07574 formate dehydrogenase 88.2 5.9 0.00013 43.6 12.2 142 378-552 187-335 (385)
105 cd01337 MDH_glyoxysomal_mitoch 88.0 2.8 6.1E-05 44.7 9.4 102 385-501 2-120 (310)
106 cd05297 GH4_alpha_glucosidase_ 87.6 1.2 2.5E-05 49.2 6.5 127 385-527 2-171 (423)
107 TIGR01763 MalateDH_bact malate 87.5 1.8 4E-05 45.6 7.6 124 384-525 2-144 (305)
108 PRK14851 hypothetical protein; 87.4 2.2 4.8E-05 50.1 8.9 123 379-517 39-194 (679)
109 PRK14183 bifunctional 5,10-met 87.1 3.4 7.3E-05 43.9 9.3 85 361-483 135-220 (281)
110 TIGR01915 npdG NADPH-dependent 87.0 2.3 4.9E-05 42.3 7.6 96 385-503 2-106 (219)
111 PF02056 Glyco_hydro_4: Family 86.5 1.2 2.6E-05 44.4 5.2 109 385-507 1-151 (183)
112 PRK12550 shikimate 5-dehydroge 86.5 1.5 3.3E-05 45.7 6.3 56 352-427 100-155 (272)
113 cd01336 MDH_cytoplasmic_cytoso 86.3 4.4 9.5E-05 43.3 9.8 134 385-528 4-157 (325)
114 PRK07878 molybdopterin biosynt 86.2 2.1 4.6E-05 46.7 7.4 38 379-427 38-75 (392)
115 PRK14190 bifunctional 5,10-met 86.2 4 8.6E-05 43.4 9.2 84 362-483 137-221 (284)
116 TIGR00872 gnd_rel 6-phosphoglu 86.0 2.3 4.9E-05 44.4 7.3 99 385-509 2-102 (298)
117 PRK05597 molybdopterin biosynt 85.6 2.7 5.9E-05 45.3 7.8 38 379-427 24-61 (355)
118 PRK14179 bifunctional 5,10-met 85.6 4.5 9.8E-05 42.9 9.2 92 363-498 138-230 (284)
119 PRK08644 thiamine biosynthesis 85.5 0.89 1.9E-05 45.6 3.8 38 379-427 24-61 (212)
120 TIGR00561 pntA NAD(P) transhyd 85.4 2 4.3E-05 48.9 7.0 177 279-487 66-276 (511)
121 PF01262 AlaDh_PNT_C: Alanine 85.4 0.33 7.1E-06 46.4 0.7 89 381-486 18-130 (168)
122 PRK08291 ectoine utilization p 85.4 3.1 6.8E-05 44.1 8.1 115 369-510 120-240 (330)
123 PRK07411 hypothetical protein; 85.2 2.4 5.2E-05 46.3 7.3 102 379-496 34-159 (390)
124 PRK14184 bifunctional 5,10-met 85.2 2.8 6.2E-05 44.5 7.6 96 362-497 136-232 (286)
125 PRK07531 bifunctional 3-hydrox 84.9 2.1 4.6E-05 48.0 6.9 31 384-426 5-35 (495)
126 cd01492 Aos1_SUMO Ubiquitin ac 84.7 1 2.2E-05 44.7 3.8 76 379-471 17-96 (197)
127 TIGR01772 MDH_euk_gproteo mala 84.6 5.8 0.00013 42.4 9.6 128 385-528 1-148 (312)
128 PRK07634 pyrroline-5-carboxyla 84.6 1.6 3.4E-05 43.4 5.1 100 382-501 3-102 (245)
129 PRK08374 homoserine dehydrogen 84.5 5.2 0.00011 42.9 9.3 104 384-495 3-120 (336)
130 PRK14106 murD UDP-N-acetylmura 84.5 3.4 7.3E-05 44.9 8.0 114 380-525 2-116 (450)
131 cd01338 MDH_choloroplast_like 84.4 5.2 0.00011 42.8 9.2 111 384-501 3-131 (322)
132 cd05298 GH4_GlvA_pagL_like Gly 84.3 2 4.3E-05 47.9 6.2 130 384-528 1-171 (437)
133 PF02882 THF_DHG_CYH_C: Tetrah 84.3 4.7 0.0001 39.3 8.1 83 363-483 16-99 (160)
134 PRK11880 pyrroline-5-carboxyla 84.3 3.6 7.9E-05 41.5 7.7 121 384-532 3-123 (267)
135 PRK14174 bifunctional 5,10-met 84.3 3.6 7.8E-05 43.9 7.9 95 363-497 139-234 (295)
136 PRK12921 2-dehydropantoate 2-r 83.7 4.8 0.0001 41.1 8.3 101 385-502 2-106 (305)
137 PRK13243 glyoxylate reductase; 83.6 9.9 0.00022 40.7 10.9 192 349-580 88-313 (333)
138 TIGR02371 ala_DH_arch alanine 83.6 5.2 0.00011 42.6 8.8 104 382-510 127-235 (325)
139 cd01339 LDH-like_MDH L-lactate 83.5 2.3 4.9E-05 44.3 6.0 118 386-525 1-141 (300)
140 PRK00094 gpsA NAD(P)H-dependen 83.5 1.9 4.1E-05 44.4 5.4 102 385-502 3-109 (325)
141 TIGR02355 moeB molybdopterin s 83.5 1.3 2.8E-05 45.3 4.0 38 379-427 20-57 (240)
142 PRK14172 bifunctional 5,10-met 83.0 7.4 0.00016 41.2 9.5 83 363-483 138-221 (278)
143 cd05290 LDH_3 A subgroup of L- 82.9 3.6 7.9E-05 43.6 7.3 124 385-526 1-146 (307)
144 PRK14188 bifunctional 5,10-met 82.4 4.3 9.4E-05 43.2 7.6 92 363-498 138-230 (296)
145 PRK14177 bifunctional 5,10-met 82.4 7.7 0.00017 41.3 9.4 82 364-483 140-222 (284)
146 PRK14618 NAD(P)H-dependent gly 82.2 2.1 4.6E-05 44.8 5.2 32 384-427 5-36 (328)
147 TIGR01758 MDH_euk_cyt malate d 81.9 8.5 0.00018 41.2 9.6 134 385-529 1-155 (324)
148 TIGR01759 MalateDH-SF1 malate 81.7 7.4 0.00016 41.7 9.1 121 384-515 4-143 (323)
149 cd01485 E1-1_like Ubiquitin ac 81.6 1.3 2.9E-05 43.8 3.3 74 379-469 15-94 (198)
150 PRK15469 ghrA bifunctional gly 81.2 14 0.00031 39.3 10.9 179 361-580 98-298 (312)
151 TIGR02279 PaaC-3OHAcCoADH 3-hy 81.2 18 0.00039 41.1 12.3 36 538-573 186-221 (503)
152 PRK14170 bifunctional 5,10-met 81.1 8.9 0.00019 40.8 9.3 84 362-483 136-220 (284)
153 PRK05690 molybdopterin biosynt 81.1 2 4.3E-05 44.0 4.4 38 379-427 28-65 (245)
154 PRK08410 2-hydroxyacid dehydro 81.0 17 0.00036 38.6 11.4 136 349-520 84-252 (311)
155 PRK14187 bifunctional 5,10-met 80.9 9.6 0.00021 40.7 9.5 84 362-483 139-223 (294)
156 PLN02516 methylenetetrahydrofo 80.9 9.3 0.0002 40.9 9.4 91 361-495 145-236 (299)
157 PRK09599 6-phosphogluconate de 80.9 4.1 8.8E-05 42.4 6.7 91 385-499 2-95 (301)
158 TIGR00507 aroE shikimate 5-deh 80.8 3.7 8E-05 42.2 6.3 56 351-426 93-148 (270)
159 PRK06823 ornithine cyclodeamin 80.6 8.1 0.00018 41.2 8.9 105 382-511 127-236 (315)
160 PRK14166 bifunctional 5,10-met 80.5 9.9 0.00021 40.4 9.4 85 361-483 135-220 (282)
161 PRK06522 2-dehydropantoate 2-r 80.3 5.5 0.00012 40.6 7.3 100 385-501 2-103 (304)
162 PRK15116 sulfur acceptor prote 80.2 5.6 0.00012 41.8 7.4 107 379-503 26-135 (268)
163 PRK02472 murD UDP-N-acetylmura 80.2 6.1 0.00013 42.9 8.0 35 381-427 3-37 (447)
164 cd05293 LDH_1 A subgroup of L- 80.0 5.5 0.00012 42.3 7.4 126 384-526 4-147 (312)
165 PRK09310 aroDE bifunctional 3- 79.8 3.5 7.7E-05 46.2 6.2 47 368-426 317-363 (477)
166 PRK15317 alkyl hydroperoxide r 79.8 2.9 6.2E-05 46.8 5.5 85 331-427 148-243 (517)
167 PRK01710 murD UDP-N-acetylmura 79.8 8.2 0.00018 42.6 8.9 113 381-525 12-125 (458)
168 PLN03139 formate dehydrogenase 79.8 18 0.0004 39.9 11.5 143 378-553 194-343 (386)
169 PTZ00345 glycerol-3-phosphate 79.7 6.7 0.00015 42.8 8.1 25 381-405 9-33 (365)
170 cd01483 E1_enzyme_family Super 79.7 2.5 5.4E-05 38.9 4.2 69 385-470 1-73 (143)
171 PRK14168 bifunctional 5,10-met 79.6 12 0.00025 40.2 9.6 97 361-497 139-236 (297)
172 PRK06436 glycerate dehydrogena 79.6 32 0.0007 36.6 12.9 107 361-499 84-210 (303)
173 cd01487 E1_ThiF_like E1_ThiF_l 79.6 2.4 5.3E-05 41.1 4.2 32 385-427 1-32 (174)
174 PRK14193 bifunctional 5,10-met 79.4 11 0.00023 40.2 9.2 85 363-483 138-223 (284)
175 PRK12480 D-lactate dehydrogena 79.2 14 0.0003 39.6 10.2 193 349-580 90-321 (330)
176 PRK06141 ornithine cyclodeamin 79.1 8.8 0.00019 40.6 8.6 105 382-510 124-232 (314)
177 PRK14171 bifunctional 5,10-met 79.1 8.4 0.00018 41.1 8.4 86 360-483 136-222 (288)
178 PRK05442 malate dehydrogenase; 78.9 12 0.00026 40.3 9.5 120 385-515 6-144 (326)
179 TIGR03140 AhpF alkyl hydropero 78.8 3.3 7.1E-05 46.4 5.6 74 331-404 149-233 (515)
180 COG0578 GlpA Glycerol-3-phosph 78.6 10 0.00023 43.5 9.5 146 382-597 11-165 (532)
181 PRK14169 bifunctional 5,10-met 78.3 13 0.00028 39.6 9.4 84 362-483 135-219 (282)
182 PF07992 Pyr_redox_2: Pyridine 78.3 3.1 6.8E-05 39.1 4.5 32 385-428 1-32 (201)
183 cd00755 YgdL_like Family of ac 78.0 2.5 5.4E-05 43.3 4.0 37 380-427 8-44 (231)
184 PRK07066 3-hydroxybutyryl-CoA 77.7 5.8 0.00013 42.6 6.8 109 456-571 103-219 (321)
185 PRK06487 glycerate dehydrogena 77.6 58 0.0013 34.7 14.1 188 349-580 87-309 (317)
186 PRK06035 3-hydroxyacyl-CoA deh 77.5 7.2 0.00016 40.3 7.2 32 384-427 4-35 (291)
187 PRK06932 glycerate dehydrogena 77.5 22 0.00048 37.8 11.0 138 379-553 143-289 (314)
188 PF01113 DapB_N: Dihydrodipico 77.4 4.3 9.3E-05 37.2 5.0 93 385-496 2-97 (124)
189 PRK12490 6-phosphogluconate de 77.4 5.6 0.00012 41.5 6.4 93 385-501 2-97 (299)
190 PRK14185 bifunctional 5,10-met 77.2 15 0.00033 39.3 9.6 93 363-495 137-230 (293)
191 PRK13581 D-3-phosphoglycerate 77.1 45 0.00098 38.0 13.9 196 349-582 85-305 (526)
192 TIGR01381 E1_like_apg7 E1-like 77.1 2.3 5E-05 49.8 3.8 40 379-429 334-373 (664)
193 COG0686 Ald Alanine dehydrogen 77.0 3 6.5E-05 45.3 4.3 109 381-510 166-290 (371)
194 PRK11790 D-3-phosphoglycerate 77.0 83 0.0018 34.9 15.6 211 331-583 79-320 (409)
195 PRK15409 bifunctional glyoxyla 76.9 23 0.0005 37.9 11.0 191 350-579 88-309 (323)
196 PRK06407 ornithine cyclodeamin 76.7 14 0.00031 39.1 9.2 105 382-511 116-226 (301)
197 PRK10886 DnaA initiator-associ 76.7 9.8 0.00021 38.1 7.6 91 381-486 39-130 (196)
198 PLN02527 aspartate carbamoyltr 76.5 73 0.0016 34.1 14.5 130 322-473 93-228 (306)
199 PRK14182 bifunctional 5,10-met 76.2 16 0.00035 38.9 9.4 83 363-483 137-220 (282)
200 cd05294 LDH-like_MDH_nadp A la 76.2 13 0.00028 39.4 8.8 120 385-525 2-147 (309)
201 PRK00141 murD UDP-N-acetylmura 76.1 7 0.00015 43.5 7.1 36 380-427 12-47 (473)
202 KOG0685 Flavin-containing amin 75.8 1.3 2.8E-05 50.0 1.3 26 379-404 17-42 (498)
203 PRK08268 3-hydroxy-acyl-CoA de 75.7 9.5 0.00021 43.2 8.1 103 461-572 111-222 (507)
204 KOG0069 Glyoxylate/hydroxypyru 75.6 15 0.00033 40.0 9.3 164 361-559 120-310 (336)
205 PRK07680 late competence prote 75.6 5.8 0.00013 40.6 5.9 98 385-502 2-100 (273)
206 PRK14180 bifunctional 5,10-met 75.4 17 0.00036 38.8 9.3 85 361-483 136-221 (282)
207 TIGR01408 Ube1 ubiquitin-activ 75.4 1.3 2.8E-05 54.1 1.3 88 314-427 358-457 (1008)
208 TIGR02622 CDP_4_6_dhtase CDP-g 75.3 9.1 0.0002 40.0 7.3 106 381-498 2-127 (349)
209 KOG0029 Amine oxidase [Seconda 75.1 1.6 3.5E-05 49.4 1.9 37 381-420 13-49 (501)
210 PRK07231 fabG 3-ketoacyl-(acyl 75.0 7.4 0.00016 37.7 6.2 36 380-427 2-38 (251)
211 TIGR03366 HpnZ_proposed putati 75.0 18 0.0004 36.6 9.3 47 368-426 107-153 (280)
212 PRK09880 L-idonate 5-dehydroge 74.9 28 0.00062 36.3 10.8 44 371-426 159-202 (343)
213 cd05292 LDH_2 A subgroup of L- 74.4 10 0.00022 40.1 7.4 126 385-527 2-144 (308)
214 PRK06153 hypothetical protein; 74.3 4 8.7E-05 45.2 4.6 95 379-495 172-271 (393)
215 PRK07340 ornithine cyclodeamin 73.9 23 0.00049 37.5 9.9 105 381-511 123-231 (304)
216 PRK14173 bifunctional 5,10-met 73.9 19 0.00042 38.4 9.3 83 363-483 135-218 (287)
217 COG0345 ProC Pyrroline-5-carbo 73.8 15 0.00033 38.7 8.5 35 384-427 2-37 (266)
218 PRK14181 bifunctional 5,10-met 73.7 23 0.0005 37.8 9.8 96 361-496 131-227 (287)
219 PLN02616 tetrahydrofolate dehy 73.3 18 0.00039 39.9 9.1 82 364-483 212-294 (364)
220 PF02423 OCD_Mu_crystall: Orni 73.0 6 0.00013 41.9 5.4 103 383-510 128-237 (313)
221 PLN02819 lysine-ketoglutarate 73.0 18 0.00038 44.9 9.9 100 382-487 202-326 (1042)
222 PRK08229 2-dehydropantoate 2-r 72.8 8.3 0.00018 40.3 6.3 103 384-503 3-112 (341)
223 COG0190 FolD 5,10-methylene-te 72.6 14 0.0003 39.4 7.9 125 327-495 90-225 (283)
224 cd00300 LDH_like L-lactate deh 72.6 10 0.00022 39.8 6.9 123 386-525 1-141 (300)
225 PRK14186 bifunctional 5,10-met 72.5 22 0.00047 38.2 9.4 90 363-496 138-228 (297)
226 PLN02602 lactate dehydrogenase 72.3 13 0.00027 40.5 7.7 124 384-526 38-181 (350)
227 PRK12439 NAD(P)H-dependent gly 71.8 7 0.00015 41.7 5.6 103 383-501 7-114 (341)
228 PRK14167 bifunctional 5,10-met 71.5 26 0.00056 37.6 9.6 96 363-498 137-233 (297)
229 PRK02842 light-independent pro 71.3 18 0.0004 39.8 8.8 87 370-471 277-368 (427)
230 TIGR01327 PGDH D-3-phosphoglyc 70.3 84 0.0018 35.9 13.9 197 349-582 83-304 (525)
231 PF00070 Pyr_redox: Pyridine n 70.1 8.5 0.00018 32.0 4.6 35 385-431 1-35 (80)
232 cd01491 Ube1_repeat1 Ubiquitin 70.0 4.2 9E-05 43.1 3.4 38 379-427 15-52 (286)
233 COG1486 CelF Alpha-galactosida 69.7 4.3 9.2E-05 45.6 3.5 131 382-527 2-173 (442)
234 PTZ00142 6-phosphogluconate de 69.3 8.4 0.00018 43.4 5.8 96 385-500 3-103 (470)
235 PF02737 3HCDH_N: 3-hydroxyacy 69.1 6.5 0.00014 38.3 4.3 31 385-427 1-31 (180)
236 PF13738 Pyr_redox_3: Pyridine 69.1 5.4 0.00012 37.8 3.6 30 387-427 1-30 (203)
237 PRK07679 pyrroline-5-carboxyla 69.0 21 0.00046 36.7 8.2 22 383-404 3-24 (279)
238 COG0476 ThiF Dinucleotide-util 68.9 7.1 0.00015 39.7 4.7 39 378-427 25-63 (254)
239 PRK09754 phenylpropionate diox 68.9 7.2 0.00016 41.8 5.0 36 382-427 2-37 (396)
240 PRK08618 ornithine cyclodeamin 68.9 40 0.00087 35.8 10.5 102 382-509 126-233 (325)
241 cd01484 E1-2_like Ubiquitin ac 68.8 6.4 0.00014 40.4 4.3 32 385-427 1-32 (234)
242 PLN02520 bifunctional 3-dehydr 68.4 11 0.00023 43.1 6.4 38 378-427 374-411 (529)
243 COG0039 Mdh Malate/lactate deh 68.4 10 0.00022 41.0 5.8 108 384-514 1-126 (313)
244 PRK07589 ornithine cyclodeamin 68.1 35 0.00076 37.1 10.0 103 383-510 129-238 (346)
245 PF01494 FAD_binding_3: FAD bi 67.8 6.7 0.00014 39.5 4.2 34 384-429 2-35 (356)
246 TIGR00873 gnd 6-phosphoglucona 67.8 13 0.00028 41.9 6.8 95 385-499 1-99 (467)
247 PRK04346 tryptophan synthase s 67.5 1.5E+02 0.0032 33.1 14.7 108 463-578 226-345 (397)
248 cd01486 Apg7 Apg7 is an E1-lik 67.4 6.8 0.00015 42.1 4.3 32 385-427 1-32 (307)
249 PRK14620 NAD(P)H-dependent gly 67.4 15 0.00033 38.4 6.9 31 385-427 2-32 (326)
250 PRK06270 homoserine dehydrogen 66.8 43 0.00093 36.0 10.2 105 384-495 3-123 (341)
251 PLN02897 tetrahydrofolate dehy 66.7 22 0.00048 39.0 8.0 83 363-483 194-277 (345)
252 cd08237 ribitol-5-phosphate_DH 66.7 97 0.0021 32.5 12.7 35 382-426 163-197 (341)
253 TIGR01771 L-LDH-NAD L-lactate 66.6 13 0.00028 39.4 6.1 124 388-526 1-140 (299)
254 PF03447 NAD_binding_3: Homose 66.4 9.9 0.00021 33.8 4.6 88 390-495 1-88 (117)
255 cd01488 Uba3_RUB Ubiquitin act 66.0 7.4 0.00016 41.4 4.2 32 385-427 1-32 (291)
256 TIGR01214 rmlD dTDP-4-dehydror 66.0 27 0.00058 35.0 8.0 60 385-474 1-61 (287)
257 PF01408 GFO_IDH_MocA: Oxidore 65.9 4.5 9.8E-05 35.4 2.3 90 385-495 2-91 (120)
258 PF03446 NAD_binding_2: NAD bi 65.5 3.8 8.2E-05 38.9 1.8 103 384-514 2-108 (163)
259 PRK13938 phosphoheptose isomer 64.8 20 0.00043 35.9 6.8 104 382-500 44-150 (196)
260 PRK01713 ornithine carbamoyltr 64.1 41 0.00089 36.4 9.5 137 315-471 92-233 (334)
261 PLN02688 pyrroline-5-carboxyla 64.0 15 0.00032 37.1 5.9 21 385-405 2-22 (266)
262 COG0240 GpsA Glycerol-3-phosph 63.9 13 0.00028 40.4 5.7 95 384-498 2-105 (329)
263 PRK15181 Vi polysaccharide bio 63.5 31 0.00067 36.3 8.3 105 377-498 9-141 (348)
264 PRK07502 cyclohexadienyl dehyd 63.5 24 0.00051 36.8 7.4 34 384-427 7-40 (307)
265 cd00377 ICL_PEPM Members of th 63.5 1.8E+02 0.004 29.9 16.0 36 477-514 183-218 (243)
266 KOG2337 Ubiquitin activating E 63.1 6.3 0.00014 45.3 3.2 165 381-558 338-522 (669)
267 PRK11730 fadB multifunctional 62.8 40 0.00086 40.0 9.8 108 457-573 413-528 (715)
268 TIGR01292 TRX_reduct thioredox 62.8 9.1 0.0002 38.1 4.1 31 385-427 2-32 (300)
269 PRK00536 speE spermidine synth 62.7 12 0.00025 39.4 4.9 100 384-527 74-175 (262)
270 TIGR01285 nifN nitrogenase mol 62.5 13 0.00029 41.1 5.7 81 371-472 299-382 (432)
271 PRK07877 hypothetical protein; 62.5 17 0.00037 43.3 6.8 101 379-498 103-229 (722)
272 cd01489 Uba2_SUMO Ubiquitin ac 62.3 10 0.00022 40.7 4.5 32 385-427 1-32 (312)
273 KOG1495 Lactate dehydrogenase 62.1 21 0.00045 38.5 6.6 130 379-531 16-169 (332)
274 PRK06046 alanine dehydrogenase 62.0 47 0.001 35.4 9.4 103 382-510 128-236 (326)
275 KOG2304 3-hydroxyacyl-CoA dehy 61.3 7.3 0.00016 40.9 3.1 33 383-427 11-43 (298)
276 COG2423 Predicted ornithine cy 61.2 43 0.00093 36.4 9.0 122 366-513 115-241 (330)
277 PRK12570 N-acetylmuramic acid- 61.2 17 0.00036 38.6 5.8 37 463-501 127-165 (296)
278 PRK06719 precorrin-2 dehydroge 60.9 12 0.00026 35.9 4.3 36 380-427 10-45 (157)
279 PRK06476 pyrroline-5-carboxyla 60.9 22 0.00047 36.1 6.4 33 385-426 2-34 (258)
280 PRK06718 precorrin-2 dehydroge 60.8 12 0.00026 37.4 4.4 35 380-426 7-41 (202)
281 PRK06928 pyrroline-5-carboxyla 60.3 32 0.0007 35.6 7.6 35 384-427 2-37 (277)
282 PF05834 Lycopene_cycl: Lycope 59.8 11 0.00024 40.4 4.3 35 386-430 2-36 (374)
283 PRK11883 protoporphyrinogen ox 59.8 5.7 0.00012 42.4 2.2 22 384-405 1-22 (451)
284 PRK12429 3-hydroxybutyrate deh 59.4 23 0.0005 34.5 6.1 35 381-427 2-37 (258)
285 PRK12828 short chain dehydroge 59.1 21 0.00046 34.1 5.7 36 380-427 4-40 (239)
286 PRK09987 dTDP-4-dehydrorhamnos 59.0 42 0.00092 34.6 8.2 86 385-498 2-104 (299)
287 COG1179 Dinucleotide-utilizing 58.7 8.4 0.00018 40.6 3.0 42 380-432 27-68 (263)
288 PRK05749 3-deoxy-D-manno-octul 58.7 30 0.00065 37.1 7.4 37 454-495 312-349 (425)
289 PLN00112 malate dehydrogenase 58.6 34 0.00074 38.6 7.9 133 384-526 101-253 (444)
290 TIGR02028 ChlP geranylgeranyl 58.6 11 0.00024 40.7 4.1 31 385-427 2-32 (398)
291 PRK12409 D-amino acid dehydrog 58.4 12 0.00027 39.9 4.3 33 384-428 2-34 (410)
292 COG1052 LdhA Lactate dehydroge 58.3 86 0.0019 33.9 10.6 165 376-580 139-313 (324)
293 COG5322 Predicted dehydrogenas 58.2 14 0.0003 39.7 4.6 50 355-404 139-189 (351)
294 PRK05866 short chain dehydroge 58.2 35 0.00077 35.1 7.5 39 378-427 35-73 (293)
295 TIGR01470 cysG_Nterm siroheme 58.2 14 0.0003 37.1 4.3 36 380-427 6-41 (205)
296 TIGR02023 BchP-ChlP geranylger 58.1 12 0.00025 40.0 4.1 31 385-427 2-32 (388)
297 TIGR01283 nifE nitrogenase mol 57.4 24 0.00053 39.2 6.6 85 371-470 314-402 (456)
298 TIGR00465 ilvC ketol-acid redu 57.4 35 0.00077 36.5 7.5 24 381-404 1-24 (314)
299 TIGR03376 glycerol3P_DH glycer 57.3 20 0.00044 38.8 5.8 20 385-404 1-20 (342)
300 PRK05993 short chain dehydroge 57.1 28 0.00061 35.1 6.4 33 383-427 4-37 (277)
301 PF03435 Saccharop_dh: Sacchar 57.1 6.5 0.00014 42.0 2.0 91 386-495 1-96 (386)
302 PRK11199 tyrA bifunctional cho 56.6 52 0.0011 35.8 8.7 33 383-427 98-131 (374)
303 PRK06249 2-dehydropantoate 2-r 56.3 33 0.00071 35.9 7.0 105 381-502 3-110 (313)
304 COG1250 FadB 3-hydroxyacyl-CoA 56.3 1.1E+02 0.0025 33.0 11.1 111 455-574 101-220 (307)
305 TIGR01181 dTDP_gluc_dehyt dTDP 56.2 56 0.0012 32.7 8.4 78 385-474 1-84 (317)
306 PLN02240 UDP-glucose 4-epimera 56.1 28 0.00062 35.9 6.4 107 380-498 2-132 (352)
307 PRK06184 hypothetical protein; 56.1 14 0.00031 40.9 4.5 34 382-427 2-35 (502)
308 cd05007 SIS_Etherase N-acetylm 55.9 23 0.00051 36.6 5.8 38 462-501 117-156 (257)
309 PRK07233 hypothetical protein; 55.4 13 0.00028 39.3 3.9 31 385-427 1-31 (434)
310 TIGR03026 NDP-sugDHase nucleot 55.0 50 0.0011 36.1 8.3 31 385-427 2-32 (411)
311 TIGR01505 tartro_sem_red 2-hyd 55.0 34 0.00074 35.2 6.8 31 385-427 1-31 (291)
312 PRK03369 murD UDP-N-acetylmura 54.8 47 0.001 37.3 8.3 89 381-494 10-98 (488)
313 PRK12771 putative glutamate sy 54.8 23 0.00049 40.3 5.9 36 380-427 134-169 (564)
314 PRK07236 hypothetical protein; 54.7 18 0.00039 38.5 4.8 25 381-405 4-28 (386)
315 PF13454 NAD_binding_9: FAD-NA 54.7 12 0.00025 35.3 3.0 36 387-429 1-36 (156)
316 PRK13394 3-hydroxybutyrate deh 54.4 33 0.00072 33.5 6.3 36 380-427 4-40 (262)
317 PRK06847 hypothetical protein; 54.2 17 0.00037 38.0 4.5 22 383-404 4-25 (375)
318 PRK13512 coenzyme A disulfide 54.0 12 0.00027 40.9 3.5 33 385-427 3-35 (438)
319 KOG0743 AAA+-type ATPase [Post 54.0 20 0.00042 40.7 5.1 104 251-391 241-345 (457)
320 TIGR03169 Nterm_to_SelD pyridi 53.6 8.6 0.00019 40.4 2.2 36 385-429 1-36 (364)
321 cd01968 Nitrogenase_NifE_I Nit 53.6 20 0.00042 39.2 5.0 84 373-472 277-365 (410)
322 PF01266 DAO: FAD dependent ox 53.3 18 0.00039 36.5 4.4 31 385-427 1-31 (358)
323 PRK01438 murD UDP-N-acetylmura 53.2 20 0.00044 39.5 5.1 29 376-404 9-37 (480)
324 PRK08163 salicylate hydroxylas 52.9 17 0.00038 38.3 4.3 22 383-404 4-25 (396)
325 TIGR01316 gltA glutamate synth 52.8 20 0.00043 39.6 4.9 36 380-427 130-165 (449)
326 PLN02695 GDP-D-mannose-3',5'-e 52.3 51 0.0011 35.3 7.8 97 382-498 20-137 (370)
327 PRK07819 3-hydroxybutyryl-CoA 52.2 18 0.00038 37.8 4.2 22 384-405 6-27 (286)
328 cd05006 SIS_GmhA Phosphoheptos 52.2 75 0.0016 30.4 8.2 22 463-486 101-122 (177)
329 PRK09564 coenzyme A disulfide 52.2 20 0.00044 38.7 4.8 36 384-429 1-36 (444)
330 PRK07530 3-hydroxybutyryl-CoA 52.2 18 0.0004 37.2 4.3 32 384-427 5-36 (292)
331 PRK09126 hypothetical protein; 52.1 18 0.00038 38.2 4.2 22 383-404 3-24 (392)
332 TIGR00670 asp_carb_tr aspartat 51.9 3.3E+02 0.0072 29.2 15.3 136 314-473 85-226 (301)
333 TIGR03693 ocin_ThiF_like putat 51.7 60 0.0013 38.4 8.6 104 343-474 101-215 (637)
334 PRK04176 ribulose-1,5-biphosph 51.7 18 0.00039 37.3 4.1 35 382-428 24-58 (257)
335 PRK06138 short chain dehydroge 51.6 34 0.00074 33.2 5.9 77 380-474 2-92 (252)
336 cd01490 Ube1_repeat2 Ubiquitin 51.6 25 0.00054 39.6 5.4 37 385-427 1-37 (435)
337 PRK12829 short chain dehydroge 50.7 52 0.0011 32.2 7.0 37 380-427 8-44 (264)
338 PRK07251 pyridine nucleotide-d 50.6 19 0.00042 39.1 4.4 34 383-428 3-36 (438)
339 TIGR00441 gmhA phosphoheptose 50.6 87 0.0019 29.6 8.2 37 463-501 79-117 (154)
340 TIGR00274 N-acetylmuramic acid 50.6 40 0.00087 35.8 6.5 38 463-502 126-165 (291)
341 COG0644 FixC Dehydrogenases (f 50.3 20 0.00042 38.7 4.3 36 383-430 3-38 (396)
342 PRK04965 NADH:flavorubredoxin 50.3 15 0.00033 39.0 3.5 35 384-428 3-37 (377)
343 COG0499 SAM1 S-adenosylhomocys 50.3 46 0.001 37.1 7.0 125 356-515 185-315 (420)
344 PRK00414 gmhA phosphoheptose i 50.2 84 0.0018 31.1 8.4 104 381-499 42-147 (192)
345 PRK07364 2-octaprenyl-6-methox 50.1 18 0.00038 38.5 3.9 22 383-404 18-39 (415)
346 PLN02172 flavin-containing mon 50.1 22 0.00047 39.8 4.7 25 380-404 7-31 (461)
347 COG2072 TrkA Predicted flavopr 50.1 22 0.00047 39.5 4.7 36 382-428 7-42 (443)
348 PRK12769 putative oxidoreducta 50.0 20 0.00043 41.6 4.6 35 381-427 325-359 (654)
349 PRK12810 gltD glutamate syntha 49.9 22 0.00048 39.4 4.7 34 382-427 142-175 (471)
350 TIGR01179 galE UDP-glucose-4-e 49.9 75 0.0016 31.9 8.1 97 385-496 1-119 (328)
351 PRK06182 short chain dehydroge 49.9 45 0.00097 33.3 6.5 77 382-474 2-85 (273)
352 PRK07831 short chain dehydroge 49.8 43 0.00094 33.1 6.4 36 379-426 13-50 (262)
353 PLN02427 UDP-apiose/xylose syn 49.8 60 0.0013 34.5 7.8 83 374-473 5-96 (386)
354 PF13580 SIS_2: SIS domain; PD 49.8 14 0.00029 34.4 2.6 30 455-486 95-124 (138)
355 PRK06475 salicylate hydroxylas 49.7 19 0.00041 38.6 4.0 21 384-404 3-23 (400)
356 PRK13937 phosphoheptose isomer 49.6 54 0.0012 32.1 6.9 37 463-501 106-144 (188)
357 TIGR01790 carotene-cycl lycope 49.3 19 0.00041 38.0 3.9 31 386-428 2-32 (388)
358 KOG2018 Predicted dinucleotide 49.2 19 0.00042 39.4 4.0 40 379-429 70-109 (430)
359 PRK06416 dihydrolipoamide dehy 49.2 20 0.00042 39.3 4.2 33 384-428 5-37 (462)
360 PRK07067 sorbitol dehydrogenas 49.2 23 0.0005 34.9 4.3 79 380-474 3-91 (257)
361 cd01493 APPBP1_RUB Ubiquitin a 49.0 19 0.00041 40.2 4.1 38 379-427 16-53 (425)
362 PTZ00245 ubiquitin activating 48.9 16 0.00035 38.9 3.3 73 379-469 22-98 (287)
363 PRK07523 gluconate 5-dehydroge 48.8 51 0.0011 32.4 6.6 36 380-427 7-43 (255)
364 PRK06841 short chain dehydroge 48.6 39 0.00085 33.0 5.8 36 380-427 12-48 (255)
365 PRK05479 ketol-acid reductoiso 48.6 58 0.0013 35.4 7.5 25 380-404 14-38 (330)
366 PRK05441 murQ N-acetylmuramic 48.3 28 0.00061 36.9 5.0 39 462-502 130-170 (299)
367 PRK03515 ornithine carbamoyltr 48.2 1.2E+02 0.0025 33.1 9.7 131 322-471 97-233 (336)
368 PLN02268 probable polyamine ox 48.1 9.2 0.0002 41.2 1.4 20 385-404 2-21 (435)
369 PLN00093 geranylgeranyl diphos 47.8 21 0.00046 39.7 4.2 25 380-404 34-60 (450)
370 PRK12779 putative bifunctional 47.7 26 0.00056 42.9 5.2 39 381-431 304-346 (944)
371 PF13450 NAD_binding_8: NAD(P) 47.5 26 0.00056 29.0 3.7 30 388-429 1-30 (68)
372 PRK06171 sorbitol-6-phosphate 47.1 97 0.0021 30.7 8.3 76 380-473 6-87 (266)
373 COG0673 MviM Predicted dehydro 47.0 45 0.00098 34.4 6.2 94 383-495 3-102 (342)
374 TIGR03088 stp2 sugar transfera 47.0 1.4E+02 0.0031 30.9 9.8 37 454-495 265-301 (374)
375 cd07205 Pat_PNPLA6_PNPLA7_NTE1 46.9 94 0.002 29.5 7.9 48 361-419 9-56 (175)
376 PTZ00318 NADH dehydrogenase-li 46.8 16 0.00036 39.7 3.1 36 380-427 7-42 (424)
377 TIGR03589 PseB UDP-N-acetylglu 46.8 60 0.0013 33.9 7.1 106 381-498 2-125 (324)
378 TIGR02032 GG-red-SF geranylger 46.6 24 0.00052 34.9 4.0 32 385-428 2-33 (295)
379 PRK07424 bifunctional sterol d 46.6 36 0.00079 37.7 5.7 56 346-427 156-211 (406)
380 PRK05732 2-octaprenyl-6-methox 46.5 27 0.00058 36.7 4.5 37 382-427 2-38 (395)
381 PRK00048 dihydrodipicolinate r 46.4 1.1E+02 0.0024 31.5 8.8 88 384-496 2-90 (257)
382 PRK09186 flagellin modificatio 46.4 30 0.00065 33.8 4.6 36 381-427 2-37 (256)
383 PRK06753 hypothetical protein; 46.3 24 0.00053 36.9 4.2 20 385-404 2-21 (373)
384 PRK11559 garR tartronate semia 46.3 68 0.0015 33.0 7.4 32 384-427 3-34 (296)
385 cd04951 GT1_WbdM_like This fam 46.3 1.8E+02 0.0039 29.2 10.2 37 454-495 255-291 (360)
386 PRK01368 murD UDP-N-acetylmura 46.1 85 0.0019 35.0 8.6 107 382-525 5-112 (454)
387 PLN02653 GDP-mannose 4,6-dehyd 46.1 89 0.0019 32.4 8.2 83 379-473 2-93 (340)
388 PRK07045 putative monooxygenas 46.0 25 0.00055 37.2 4.3 21 384-404 6-26 (388)
389 PRK11259 solA N-methyltryptoph 45.9 26 0.00056 36.6 4.3 34 383-428 3-36 (376)
390 PRK03803 murD UDP-N-acetylmura 45.9 97 0.0021 34.0 8.8 110 382-525 5-116 (448)
391 PRK08507 prephenate dehydrogen 45.8 77 0.0017 32.5 7.6 33 385-427 2-34 (275)
392 PRK14476 nitrogenase molybdenu 45.8 75 0.0016 35.7 8.1 83 314-404 245-332 (455)
393 PRK06124 gluconate 5-dehydroge 45.8 61 0.0013 31.8 6.7 39 378-427 6-44 (256)
394 PF01946 Thi4: Thi4 family; PD 45.8 30 0.00064 36.1 4.5 34 383-428 17-50 (230)
395 PLN02676 polyamine oxidase 45.6 56 0.0012 36.8 7.1 24 382-405 25-48 (487)
396 COG0654 UbiH 2-polyprenyl-6-me 45.6 27 0.00058 37.4 4.4 33 383-427 2-34 (387)
397 TIGR00031 UDP-GALP_mutase UDP- 45.5 25 0.00054 38.6 4.2 31 385-427 3-33 (377)
398 PF13407 Peripla_BP_4: Peripla 45.5 60 0.0013 31.6 6.5 145 205-379 52-206 (257)
399 PTZ00431 pyrroline carboxylate 45.2 67 0.0015 32.9 7.1 105 382-501 2-116 (260)
400 TIGR02053 MerA mercuric reduct 45.1 25 0.00054 38.6 4.2 30 386-427 3-32 (463)
401 PRK12266 glpD glycerol-3-phosp 45.0 24 0.00052 39.7 4.1 33 384-428 7-39 (508)
402 PRK07608 ubiquinone biosynthes 44.8 24 0.00053 37.1 3.9 32 384-427 6-37 (388)
403 cd01979 Pchlide_reductase_N Pc 44.7 50 0.0011 36.0 6.4 34 371-404 264-297 (396)
404 PRK10157 putative oxidoreducta 44.7 24 0.00053 38.6 4.0 21 384-404 6-26 (428)
405 PLN02545 3-hydroxybutyryl-CoA 44.7 29 0.00063 35.9 4.4 31 384-426 5-35 (295)
406 TIGR01373 soxB sarcosine oxida 44.5 33 0.00073 36.6 4.9 37 382-428 29-65 (407)
407 PRK11749 dihydropyrimidine deh 44.4 29 0.00063 38.2 4.5 35 381-427 138-172 (457)
408 PRK12491 pyrroline-5-carboxyla 44.4 46 0.00099 34.7 5.8 35 384-426 3-37 (272)
409 PRK08294 phenol 2-monooxygenas 44.4 24 0.00052 41.1 4.1 44 382-436 31-75 (634)
410 TIGR01082 murC UDP-N-acetylmur 44.2 45 0.00098 36.6 6.0 105 385-525 1-107 (448)
411 PLN02463 lycopene beta cyclase 44.2 25 0.00055 39.2 4.1 32 384-427 29-60 (447)
412 PRK08219 short chain dehydroge 44.2 93 0.002 29.6 7.5 22 453-474 60-82 (227)
413 TIGR01377 soxA_mon sarcosine o 44.1 28 0.0006 36.5 4.2 33 385-429 2-34 (380)
414 PRK12770 putative glutamate sy 44.1 35 0.00076 36.1 5.0 35 381-427 16-50 (352)
415 PRK07478 short chain dehydroge 44.1 62 0.0014 31.8 6.4 37 380-427 3-39 (254)
416 TIGR00292 thiazole biosynthesi 44.0 28 0.0006 35.9 4.1 37 382-430 20-56 (254)
417 PRK04663 murD UDP-N-acetylmura 44.0 98 0.0021 34.0 8.5 117 381-537 4-121 (438)
418 PRK08849 2-octaprenyl-3-methyl 44.0 30 0.00064 36.9 4.4 33 383-427 3-35 (384)
419 PRK10892 D-arabinose 5-phospha 43.8 1.3E+02 0.0028 31.6 9.0 84 383-501 47-132 (326)
420 COG1063 Tdh Threonine dehydrog 43.6 42 0.00092 35.9 5.5 97 357-472 143-247 (350)
421 PRK12778 putative bifunctional 43.6 33 0.00071 40.6 5.1 36 380-427 428-463 (752)
422 PF13241 NAD_binding_7: Putati 43.5 18 0.00038 32.0 2.2 37 380-428 4-40 (103)
423 PRK00683 murD UDP-N-acetylmura 43.3 1E+02 0.0022 33.6 8.5 114 382-537 2-115 (418)
424 PRK06392 homoserine dehydrogen 43.3 83 0.0018 34.0 7.7 82 385-472 2-90 (326)
425 PRK14694 putative mercuric red 43.3 31 0.00068 38.0 4.6 34 382-427 5-38 (468)
426 PRK08192 aspartate carbamoyltr 43.3 4.8E+02 0.01 28.5 14.1 142 314-477 90-240 (338)
427 PRK05976 dihydrolipoamide dehy 43.3 29 0.00064 38.2 4.4 33 383-427 4-36 (472)
428 PRK06292 dihydrolipoamide dehy 43.2 30 0.00066 37.7 4.5 33 383-427 3-35 (460)
429 cd01974 Nitrogenase_MoFe_beta 43.1 27 0.00058 38.7 4.0 103 372-501 292-405 (435)
430 PRK12831 putative oxidoreducta 43.1 30 0.00066 38.5 4.5 34 382-427 139-172 (464)
431 TIGR02082 metH 5-methyltetrahy 42.9 3.2E+02 0.0069 34.9 13.4 118 317-477 427-556 (1178)
432 PRK14852 hypothetical protein; 42.9 23 0.0005 43.6 3.8 38 379-427 328-365 (989)
433 PRK09853 putative selenate red 42.9 29 0.00063 43.0 4.6 35 381-427 537-571 (1019)
434 PRK06200 2,3-dihydroxy-2,3-dih 42.9 35 0.00075 33.8 4.4 37 380-427 3-39 (263)
435 PRK11154 fadJ multifunctional 42.7 3.1E+02 0.0067 32.7 12.8 108 457-573 410-525 (708)
436 TIGR01984 UbiH 2-polyprenyl-6- 42.7 24 0.00053 37.0 3.5 20 386-405 2-21 (382)
437 PRK06912 acoL dihydrolipoamide 42.7 29 0.00063 38.2 4.3 31 385-427 2-32 (458)
438 PRK08244 hypothetical protein; 42.6 29 0.00064 38.3 4.3 21 384-404 3-23 (493)
439 TIGR01350 lipoamide_DH dihydro 42.5 29 0.00063 37.8 4.2 30 385-426 3-32 (461)
440 PRK08773 2-octaprenyl-3-methyl 42.5 27 0.00059 37.1 3.9 33 383-427 6-38 (392)
441 PRK08013 oxidoreductase; Provi 42.3 30 0.00066 37.1 4.2 33 383-427 3-35 (400)
442 cd05017 SIS_PGI_PMI_1 The memb 42.3 1.2E+02 0.0026 27.2 7.4 34 463-499 43-78 (119)
443 COG1086 Predicted nucleoside-d 42.0 40 0.00087 39.3 5.3 75 380-472 247-334 (588)
444 TIGR02440 FadJ fatty oxidation 42.0 3.5E+02 0.0075 32.3 13.0 110 455-573 403-520 (699)
445 PRK12814 putative NADPH-depend 42.0 33 0.00072 39.9 4.8 34 382-427 192-225 (652)
446 PRK08010 pyridine nucleotide-d 42.0 31 0.00068 37.5 4.3 32 384-427 4-35 (441)
447 PLN02657 3,8-divinyl protochlo 42.0 1.1E+02 0.0024 33.3 8.4 109 376-496 53-180 (390)
448 KOG0634 Aromatic amino acid am 42.0 13 0.00029 41.8 1.5 32 206-242 213-244 (472)
449 TIGR01789 lycopene_cycl lycope 41.8 36 0.00079 36.7 4.7 34 386-429 2-35 (370)
450 PRK06185 hypothetical protein; 41.8 31 0.00067 36.7 4.2 34 383-428 6-39 (407)
451 PRK08020 ubiF 2-octaprenyl-3-m 41.8 28 0.0006 36.8 3.8 33 383-427 5-37 (391)
452 PRK07588 hypothetical protein; 41.8 32 0.00068 36.5 4.2 21 384-404 1-21 (391)
453 cd00529 RuvC_resolvase Hollida 41.5 1.6E+02 0.0034 28.1 8.5 112 244-396 1-118 (154)
454 PLN02342 ornithine carbamoyltr 41.4 3.1E+02 0.0067 30.2 11.7 126 321-471 136-267 (348)
455 PRK10262 thioredoxin reductase 41.4 28 0.0006 36.1 3.6 24 381-404 4-27 (321)
456 PRK07774 short chain dehydroge 41.3 47 0.001 32.3 5.0 36 380-427 3-39 (250)
457 PRK14806 bifunctional cyclohex 41.3 57 0.0012 38.2 6.5 93 384-498 4-97 (735)
458 COG1748 LYS9 Saccharopine dehy 41.3 46 0.001 37.0 5.5 85 384-487 2-90 (389)
459 TIGR03325 BphB_TodD cis-2,3-di 41.2 37 0.00081 33.7 4.4 36 380-427 2-38 (262)
460 TIGR00658 orni_carb_tr ornithi 41.2 1.7E+02 0.0038 31.2 9.6 115 339-471 105-224 (304)
461 TIGR01988 Ubi-OHases Ubiquinon 40.7 29 0.00064 36.1 3.7 30 386-427 2-31 (385)
462 PF12831 FAD_oxidored: FAD dep 40.6 33 0.00071 37.6 4.2 33 386-430 2-34 (428)
463 cd03819 GT1_WavL_like This fam 40.6 2.1E+02 0.0046 28.8 9.8 38 454-495 256-293 (355)
464 TIGR02918 accessory Sec system 40.4 1.6E+02 0.0035 33.4 9.7 36 455-495 386-421 (500)
465 PRK08243 4-hydroxybenzoate 3-m 40.3 36 0.00078 36.3 4.4 22 383-404 2-23 (392)
466 KOG2012 Ubiquitin activating e 40.2 19 0.0004 43.7 2.3 129 347-521 412-552 (1013)
467 TIGR01692 HIBADH 3-hydroxyisob 40.1 38 0.00082 35.0 4.4 28 388-427 1-28 (288)
468 PRK01747 mnmC bifunctional tRN 40.1 35 0.00075 39.6 4.5 33 384-428 261-293 (662)
469 PRK05714 2-octaprenyl-3-methyl 40.1 27 0.00059 37.2 3.4 32 384-427 3-34 (405)
470 PRK13369 glycerol-3-phosphate 40.0 33 0.00072 38.4 4.2 32 384-427 7-38 (502)
471 PRK11101 glpA sn-glycerol-3-ph 39.9 34 0.00073 39.0 4.3 33 383-427 6-38 (546)
472 PRK12314 gamma-glutamyl kinase 39.8 1.3E+02 0.0029 31.3 8.3 34 214-247 28-61 (266)
473 cd08301 alcohol_DH_plants Plan 39.7 1.6E+02 0.0035 31.0 9.0 35 381-426 186-220 (369)
474 PRK08265 short chain dehydroge 39.7 44 0.00094 33.3 4.6 37 380-427 3-39 (261)
475 PRK08220 2,3-dihydroxybenzoate 39.7 1.8E+02 0.0038 28.4 8.8 37 380-428 5-42 (252)
476 TIGR01317 GOGAT_sm_gam glutama 39.6 37 0.00081 38.0 4.6 34 382-427 142-175 (485)
477 PRK15461 NADH-dependent gamma- 39.6 61 0.0013 33.8 5.8 31 385-427 3-33 (296)
478 PRK00711 D-amino acid dehydrog 39.6 35 0.00076 36.3 4.2 31 385-427 2-32 (416)
479 TIGR03364 HpnW_proposed FAD de 39.6 34 0.00074 35.8 4.0 31 385-427 2-32 (365)
480 PLN02350 phosphogluconate dehy 39.5 76 0.0017 36.3 7.0 98 384-501 7-110 (493)
481 PF06690 DUF1188: Protein of u 39.3 36 0.00077 35.8 4.0 89 378-501 39-128 (252)
482 PRK12823 benD 1,6-dihydroxycyc 39.3 85 0.0019 30.9 6.6 38 379-427 4-41 (260)
483 cd01976 Nitrogenase_MoFe_alpha 39.2 74 0.0016 35.2 6.7 87 370-472 287-378 (421)
484 PRK06115 dihydrolipoamide dehy 39.1 39 0.00085 37.4 4.6 33 383-427 3-35 (466)
485 PLN02568 polyamine oxidase 39.0 19 0.00041 41.2 2.2 24 382-405 4-27 (539)
486 PF04320 DUF469: Protein with 39.0 26 0.00057 32.2 2.6 32 305-336 27-61 (101)
487 TIGR03315 Se_ygfK putative sel 38.9 34 0.00074 42.3 4.4 34 382-427 536-569 (1012)
488 PRK08850 2-octaprenyl-6-methox 38.8 38 0.00082 36.3 4.3 33 383-427 4-36 (405)
489 TIGR03143 AhpF_homolog putativ 38.8 35 0.00075 38.9 4.2 32 385-428 6-37 (555)
490 PRK06057 short chain dehydroge 38.7 84 0.0018 31.0 6.4 37 380-427 4-40 (255)
491 TIGR03736 PRTRC_ThiF PRTRC sys 38.5 44 0.00096 34.8 4.6 44 382-428 10-55 (244)
492 PRK06834 hypothetical protein; 38.5 40 0.00087 37.8 4.6 35 382-428 2-36 (488)
493 PRK11728 hydroxyglutarate oxid 38.5 39 0.00085 36.1 4.3 34 384-427 3-36 (393)
494 cd00316 Oxidoreductase_nitroge 38.4 1.2E+02 0.0027 32.3 8.0 102 372-501 268-376 (399)
495 COG3349 Uncharacterized conser 38.4 23 0.0005 40.4 2.7 44 384-432 1-51 (485)
496 cd03813 GT1_like_3 This family 38.4 1.6E+02 0.0034 32.6 9.1 37 454-495 363-399 (475)
497 KOG2013 SMT3/SUMO-activating c 38.2 45 0.00097 38.5 4.8 80 379-477 8-92 (603)
498 cd05188 MDR Medium chain reduc 38.2 82 0.0018 30.4 6.1 45 371-427 123-167 (271)
499 CHL00076 chlB photochlorophyll 38.2 46 0.001 38.0 5.0 79 379-471 301-382 (513)
500 PRK07538 hypothetical protein; 38.2 37 0.00081 36.5 4.1 20 385-404 2-21 (413)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=8.3e-215 Score=1697.30 Aligned_cols=526 Identities=63% Similarity=1.046 Sum_probs=513.4
Q ss_pred ccCCCcccCCCCCccc-ccccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHhhccCCchhH
Q 007301 82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK 160 (609)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K 160 (609)
.++++..+..+...+| ..++.+|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++|++.+|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k 87 (582)
T KOG1257|consen 8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK 87 (582)
T ss_pred cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence 3444444444444555 667889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEe
Q 007301 161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT 240 (609)
Q Consensus 161 y~~L~~L~~~Ne~LFy~ll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVT 240 (609)
|+||++||+|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|||||.++|+|||.++|++||||
T Consensus 88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT 167 (582)
T KOG1257|consen 88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT 167 (582)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCCccccchhhhhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHH
Q 007301 241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA 320 (609)
Q Consensus 241 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~A 320 (609)
||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|+|||+|+||||+|
T Consensus 168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A 247 (582)
T KOG1257|consen 168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA 247 (582)
T ss_pred CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHH
Q 007301 321 VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 400 (609)
Q Consensus 321 v~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~ 400 (609)
|+++|||++|||||||+++|||++|+|||++||||||||||||+|+|||||+|+|++|++|+||+|||+|||+||+|||+
T Consensus 248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~ 327 (582)
T KOG1257|consen 248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN 327 (582)
T ss_pred HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHH
Q 007301 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKE 480 (609)
Q Consensus 401 li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~e 480 (609)
||+.+|+++ |+|+|||+|||||||++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+||||
T Consensus 328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Ftee 406 (582)
T KOG1257|consen 328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEE 406 (582)
T ss_pred HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHH
Confidence 999999995 9999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCC
Q 007301 481 VVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA 560 (609)
Q Consensus 481 vv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a 560 (609)
|||+|+++|||||||||||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||++++++
T Consensus 407 vl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~ 486 (582)
T KOG1257|consen 407 VLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA 486 (582)
T ss_pred HHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHcccCcCCCCCCcccCCCCChhhHHHHHHhhhc
Q 007301 561 IRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIANQHG 608 (609)
Q Consensus 561 ~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ir~vS~~VA~av~ 608 (609)
++|||+||++||++||++++++++++|.||||+++||+||.+||++|.
T Consensus 487 ~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~ 534 (582)
T KOG1257|consen 487 RRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVL 534 (582)
T ss_pred ccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-202 Score=1632.04 Aligned_cols=507 Identities=50% Similarity=0.864 Sum_probs=499.2
Q ss_pred cccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhHHHHHHH
Q 007301 99 VSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKL 178 (609)
Q Consensus 99 ~~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~l 178 (609)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||+++++||+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecCcccccCCCCCCCcccc
Q 007301 179 LIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGI 258 (609)
Q Consensus 179 l~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 258 (609)
|++|+|||||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCC
Q 007301 259 PVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFAN 338 (609)
Q Consensus 259 ~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~ 338 (609)
||||++|||+||||||++|||||||||||||+||+||+|+|+||||++|+||++|+||||+||+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhc
Q 007301 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (609)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr 418 (609)
+|||++|+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 599999999
Q ss_pred CcEEEEcccCcccCCCccCCchhcchhccccCCC---------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccC
Q 007301 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 489 (609)
Q Consensus 419 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 489 (609)
++||+||++|||+++|.+ |+++|++|||+.++. .+|+|||+.+|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999975 999999999976543 6899999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHH
Q 007301 490 EKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLL 569 (609)
Q Consensus 490 erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~l 569 (609)
||||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccCcCCCCCCcccCCCCChhhHHHHHHhhhc
Q 007301 570 AAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIANQHG 608 (609)
Q Consensus 570 aAA~aLA~~v~~e~~~~g~l~P~~~~ir~vS~~VA~av~ 608 (609)
+||++||++++++++.++.|||++++||+||.+||+||+
T Consensus 489 aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa 527 (563)
T PRK13529 489 AAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVA 527 (563)
T ss_pred HHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999996
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=4.8e-202 Score=1628.48 Aligned_cols=509 Identities=50% Similarity=0.852 Sum_probs=500.5
Q ss_pred ccccccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhHHHHHH
Q 007301 98 SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177 (609)
Q Consensus 98 ~~~~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ 177 (609)
..+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||+++++||+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecCcccccCCCCCCCccc
Q 007301 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMG 257 (609)
Q Consensus 178 ll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 257 (609)
+|++|+|||||||||||||+||++||++||+|||||||++|||+|+++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCC
Q 007301 258 IPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFA 337 (609)
Q Consensus 258 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~ 337 (609)
||+||++|||+||||||++|||||||||||||+||+||+|+||||+|++|+||++|+||||+||+++| |+++||||||+
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhh
Q 007301 338 NHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417 (609)
Q Consensus 338 ~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeA 417 (609)
++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 69999999
Q ss_pred cCcEEEEcccCcccCCCccCCchhcchhcccc--CC---CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCc
Q 007301 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP---VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKP 492 (609)
Q Consensus 418 r~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erP 492 (609)
++|||+||++|||+++|.++|+++|++|||+. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999767999999999963 33 57999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007301 493 IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 572 (609)
Q Consensus 493 IIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA 572 (609)
|||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA 490 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCcCCCCCCcccCCCCChhhHHHHHHhhhc
Q 007301 573 EALAGQVTQENFDKGLLYPPFKNIRKISAHIANQHG 608 (609)
Q Consensus 573 ~aLA~~v~~e~~~~g~l~P~~~~ir~vS~~VA~av~ 608 (609)
++||++++++++..|.|||++++||+||.+||+||+
T Consensus 491 ~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~ 526 (559)
T PTZ00317 491 ASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVI 526 (559)
T ss_pred HHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999996
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=9.1e-202 Score=1631.84 Aligned_cols=508 Identities=72% Similarity=1.171 Sum_probs=502.8
Q ss_pred cccccccccCcCCccCCCCCHHHHhccccCCCCCCcccCHHHHHHHHHHHhhccCCchhHHHHHHHHHHhhHHHHHHHHh
Q 007301 101 VASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLI 180 (609)
Q Consensus 101 ~~~G~~lL~~p~~NKG~aFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~ 180 (609)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++++|+||+||++||+|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecCcccccCCCCCCCccccch
Q 007301 181 DNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPV 260 (609)
Q Consensus 181 ~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 260 (609)
+|+|||||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCc
Q 007301 261 GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHN 340 (609)
Q Consensus 261 GKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~n 340 (609)
||++|||+||||||++|||||||||||||+||+||+|+||||+|++|+||++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCc
Q 007301 341 AFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (609)
Q Consensus 341 Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 420 (609)
||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007301 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (609)
Q Consensus 421 i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 500 (609)
||+||++|||+++|.++|+++|++||++.++..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 501 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 501 t~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
|++|||||||||+||+|||||||||||+||+|+||+++|||+||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCCCChhhHHHHHHhhhc
Q 007301 581 QENFDKGLLYPPFKNIRKISAHIANQHG 608 (609)
Q Consensus 581 ~e~~~~g~l~P~~~~ir~vS~~VA~av~ 608 (609)
++++..+.|||++++||+||.+||+||+
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa 546 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVA 546 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHH
Confidence 9999999999999999999999999997
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=9.2e-112 Score=892.62 Aligned_cols=392 Identities=37% Similarity=0.544 Sum_probs=351.6
Q ss_pred ccCHHHHHHHHHHHhhccCC-chhHHHHHHHHHHhhHHHHHHHHhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 007301 137 VISQELQVKKMLHNIRQYQV-PLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFIS 215 (609)
Q Consensus 137 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~LFy~ll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis 215 (609)
|+|+| |.+|.+.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++|++.|++++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999998877 99999999 899999999999999999999999999999999999888875
Q ss_pred cCCcchHHHHHhcCCCCCceEEEEecCcccccCCCCC-CCccccchhhhhHHhhhCCCCCCceeeEEeecCCCccccccC
Q 007301 216 LKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294 (609)
Q Consensus 216 ~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~D 294 (609)
.++.+++.|||||||||||||||+| ..||||||||++|||+||||| +|||+||+|||||
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 4556667999999999999999999 579999999999999999999 9999999999987
Q ss_pred cccccccccCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHH
Q 007301 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAM 374 (609)
Q Consensus 295 p~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Al 374 (609)
+++||+++.++||. ..+|||||..-|+.+.+.|||.+||||||||||||+|+|||||||+
T Consensus 131 -------------------i~~~Vkal~p~Fgg-inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnal 190 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG-INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNAL 190 (432)
T ss_pred -------------------HHHHHHHhhhcCCC-cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHH
Confidence 89999999999955 4444444444444455566678999999999999999999999999
Q ss_pred HHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCcc-CCchhcchhcc-ccCCC
Q 007301 375 KFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAH-EHEPV 452 (609)
Q Consensus 375 r~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~-~L~~~k~~fA~-~~~~~ 452 (609)
|++|++|+|+||||+|||+||+|||++|..+|++ +++||+||++|+|+++|.+ .++++|..+|. +....
T Consensus 191 k~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~ 261 (432)
T COG0281 191 KLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER 261 (432)
T ss_pred HHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccc
Confidence 9999999999999999999999999999997543 3899999999999999976 36777777775 44444
Q ss_pred CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcccc
Q 007301 453 KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEY 532 (609)
Q Consensus 453 ~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~ 532 (609)
.+ .+++ .+||||||+|++ |+||+|+|++|+ ++|||||||||| +|++||||.+|++|++|+|||||
T Consensus 262 ~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGrs------ 326 (432)
T COG0281 262 TL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGRS------ 326 (432)
T ss_pred cc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCCC------
Confidence 42 3444 569999999998 899999999999 559999999999 99999999999999999999965
Q ss_pred CCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcCCCCCCcccCCCCChhhHHHHHHhhhc
Q 007301 533 GDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIANQHG 608 (609)
Q Consensus 533 ~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ir~vS~~VA~av~ 608 (609)
++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++.. .+.|+|+++++|.+|. ||.||+
T Consensus 327 ----d~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa 396 (432)
T COG0281 327 ----DYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVA 396 (432)
T ss_pred ----CCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHH
Confidence 566699999999999999999999999999999999999999887665 7899999999999998 999986
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=8.3e-107 Score=911.54 Aligned_cols=348 Identities=30% Similarity=0.520 Sum_probs=320.3
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecCcccccCCCCCCCc-cccchhh
Q 007301 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (609)
Q Consensus 184 ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (609)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| ||||+||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 355999999999999999 899999986 4555556799999999999999999997 9999999
Q ss_pred hhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcHH
Q 007301 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAF 342 (609)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nAf 342 (609)
++|||+||||| +||+|||| +|| ++|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 56667776 577 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCc
Q 007301 343 DLLEKYGT--THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (609)
Q Consensus 343 ~lL~ryr~--~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 420 (609)
+||+|||+ +||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+. .|+++| +
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999976 498754 9
Q ss_pred EEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007301 421 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (609)
Q Consensus 421 i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 500 (609)
||++|++|||+++|.+.|+++|++||++. +..+|.|||+. ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 501 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 501 t~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
| |||+|||||+ |+|++||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 8999999999999999999999999999999999999999999999
Q ss_pred cCCCC------------CCccc--CCCCChhhHHHHHHhhhc
Q 007301 581 QENFD------------KGLLY--PPFKNIRKISAHIANQHG 608 (609)
Q Consensus 581 ~e~~~------------~g~l~--P~~~~ir~vS~~VA~av~ 608 (609)
+++++ .|.+| |+..+ ++||.+||.||+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa 398 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVA 398 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHH
Confidence 87533 45555 95544 579999999997
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=3.3e-106 Score=910.58 Aligned_cols=347 Identities=28% Similarity=0.473 Sum_probs=321.4
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecCcccccCCCCCCCc-cccchhh
Q 007301 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (609)
Q Consensus 184 ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (609)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| ||||+||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 355999999999999999 789998888 5677778999999999999999999996 9999999
Q ss_pred hhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCC-ceeeeecCCCCcH
Q 007301 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER-ILIQFEDFANHNA 341 (609)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~-~lIqfEDf~~~nA 341 (609)
+.|||+||||| +||+||||+ || ||||++|+..| |+ ..||||||+++||
T Consensus 101 ~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 455556666 55 88999999999 88 7999999999999
Q ss_pred HHHHHHHcCC--CeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcC
Q 007301 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (609)
Q Consensus 342 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 419 (609)
|+||+|||++ ||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 89999999999999999999999999999999999999999999999999987 38873 7
Q ss_pred cEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 420 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
||||||++|||+++|.+.|+++|++||++. +..+|+|||+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 45799999998 999999999 8999999999998 9999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007301 500 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 579 (609)
Q Consensus 500 Pt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v 579 (609)
|| |||||||||+||+| |||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 89999999999999 999998 899999999999999999999999999999999999999999999
Q ss_pred CcCC--------------CCCCcccCCCCChhhHHHHHHhhhc
Q 007301 580 TQEN--------------FDKGLLYPPFKNIRKISAHIANQHG 608 (609)
Q Consensus 580 ~~e~--------------~~~g~l~P~~~~ir~vS~~VA~av~ 608 (609)
++++ +....|||+..+ ++||..||.||+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa 402 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVA 402 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHH
Confidence 9873 445569995555 689999999997
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=7.4e-105 Score=896.11 Aligned_cols=347 Identities=30% Similarity=0.500 Sum_probs=323.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecCcccccCCCCCCC-ccccchhh
Q 007301 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH-GMGIPVGK 262 (609)
Q Consensus 184 ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 262 (609)
.+.|+++|||||+++|++ |+++|+++| ++.+|| +.|+|||||+|||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 355999999999999996 799999999 666655 469999999999999999999 89999999
Q ss_pred hhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCc-eeeeecCCCCcH
Q 007301 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI-LIQFEDFANHNA 341 (609)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~-lIqfEDf~~~nA 341 (609)
+.|||+||||| + +|+||||++ +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~----~~i~~~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---V----FDIEVDEED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---c----cccccCCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 4 555666663 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcC
Q 007301 342 FDLLEKYGTT--HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (609)
Q Consensus 342 f~lL~ryr~~--~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 419 (609)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 4887 78
Q ss_pred cEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 420 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 420 ~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
+||++|++|||+++|.+.|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 455799999998 999999999 8999999999998 7999999999
Q ss_pred CCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007301 500 PTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 579 (609)
Q Consensus 500 Pt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v 579 (609)
|| |||+|||||+||+| +||||| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999998 899999999999999999999999999999999999999999999
Q ss_pred CcC--------------CCCCCcccCCCCChhhHHHHHHhhhc
Q 007301 580 TQE--------------NFDKGLLYPPFKNIRKISAHIANQHG 608 (609)
Q Consensus 580 ~~e--------------~~~~g~l~P~~~~ir~vS~~VA~av~ 608 (609)
+++ ++....|+|+..+-| |+..||.||+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~~~-~~~~va~av~ 394 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFDPR-LIVKIAPAVA 394 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCChh-HHHHHHHHHH
Confidence 886 688899999988875 9999999986
No 9
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=1.6e-94 Score=727.15 Aligned_cols=248 Identities=55% Similarity=0.920 Sum_probs=225.7
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC
Q 007301 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (609)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L 438 (609)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+||||+||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 899999999999999999999999999999999999999999999999985 9999999999999999999999995 59
Q ss_pred chhcchhccccCCC---CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007301 439 QHFKKPWAHEHEPV---KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (609)
Q Consensus 439 ~~~k~~fA~~~~~~---~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT 515 (609)
+++|++|||+..+. .+|+|+|+.+|||||||+|+++|+|||||||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcCCCCCCcccCCCCC
Q 007301 516 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 595 (609)
Q Consensus 516 ~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 595 (609)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhc
Q 007301 596 IRKISAHIANQHG 608 (609)
Q Consensus 596 ir~vS~~VA~av~ 608 (609)
+|+||.+||.||+
T Consensus 239 ir~vs~~VA~aVa 251 (255)
T PF03949_consen 239 IREVSARVAAAVA 251 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH
Confidence 9999999999996
No 10
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=5.3e-92 Score=708.33 Aligned_cols=248 Identities=49% Similarity=0.777 Sum_probs=243.0
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC
Q 007301 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (609)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L 438 (609)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+||||++||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999975 8
Q ss_pred chhcch---hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007301 439 QHFKKP---WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (609)
Q Consensus 439 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT 515 (609)
.++|++ |+++.++..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcCCCCCCcccCCCCC
Q 007301 516 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 595 (609)
Q Consensus 516 ~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 595 (609)
+|||||||||||+||+|+|++|+|+|+||+|||||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhc
Q 007301 596 IRKISAHIANQHG 608 (609)
Q Consensus 596 ir~vS~~VA~av~ 608 (609)
||+||.+||.+|+
T Consensus 239 ir~vs~~VA~aVa 251 (254)
T cd00762 239 IQEVSLNIAVAVA 251 (254)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999999996
No 11
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2e-91 Score=712.40 Aligned_cols=248 Identities=60% Similarity=0.996 Sum_probs=243.1
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC
Q 007301 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (609)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L 438 (609)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999987 699999999999999999999999976 9
Q ss_pred chhcchhccccC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc
Q 007301 439 QHFKKPWAHEHE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 516 (609)
Q Consensus 439 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~ 516 (609)
+++|++||++.+ +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999766 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcCCCCCCcccCCCCCh
Q 007301 517 GRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNI 596 (609)
Q Consensus 517 GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~i 596 (609)
|||||||||||+||+|+||+++|||+||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhc
Q 007301 597 RKISAHIANQHG 608 (609)
Q Consensus 597 r~vS~~VA~av~ 608 (609)
|+||..||.||+
T Consensus 239 r~vs~~VA~aVa 250 (279)
T cd05312 239 REISAQIAVAVA 250 (279)
T ss_pred hHHHHHHHHHHH
Confidence 999999999996
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=5.1e-84 Score=622.43 Aligned_cols=182 Identities=63% Similarity=1.184 Sum_probs=164.3
Q ss_pred HHhhHHHHHHHHhhcccccCCcccchhhHHHHHHHhhhhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecCccccc
Q 007301 168 QERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 247 (609)
Q Consensus 168 ~~~Ne~LFy~ll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 247 (609)
|++||+|||+++.+|+||+||||||||||+|||+||++|++|+|||+|++|+|+|.++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchhhhhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCC
Q 007301 248 LGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGE 327 (609)
Q Consensus 248 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp 327 (609)
|||+|++|||||+||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++|+||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCCCcHHHHHHHHc
Q 007301 328 RILIQFEDFANHNAFDLLEKYG 349 (609)
Q Consensus 328 ~~lIqfEDf~~~nAf~lL~ryr 349 (609)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1.4e-57 Score=450.83 Aligned_cols=220 Identities=34% Similarity=0.502 Sum_probs=205.5
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC
Q 007301 359 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (609)
Q Consensus 359 iQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L 438 (609)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 6999999999999999999999999999999999999999999975 3876 679999999999999997679
Q ss_pred chhcchhcccc--CCC-CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc
Q 007301 439 QHFKKPWAHEH--EPV-KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 515 (609)
Q Consensus 439 ~~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT 515 (609)
.++|++|+++. .+. .+|.|+++. ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999864 223 378899986 999999999 8899999999997 899999999999 79999999999
Q ss_pred cCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcCCCCCCcccCCCCC
Q 007301 516 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 595 (609)
Q Consensus 516 ~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~~~~g~l~P~~~~ 595 (609)
|..||+|| +++.|+|+||+|||||||||++++++++|||+||++||++||++++++++..|.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhhc
Q 007301 596 IRKISAHIANQHG 608 (609)
Q Consensus 596 ir~vS~~VA~av~ 608 (609)
|+||..||.+|+
T Consensus 212 -~~~~~~va~~v~ 223 (226)
T cd05311 212 -PRVVPRVATAVA 223 (226)
T ss_pred -hhHHHHHHHHHH
Confidence 999999999997
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.85 E-value=3.5e-08 Score=84.21 Aligned_cols=86 Identities=38% Similarity=0.499 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
+||.++++++..+.+..+.+++..+++++|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999998764 3 267999888
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
|+||++++.++.|.++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 555557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.60 E-value=0.0023 Score=70.39 Aligned_cols=160 Identities=18% Similarity=0.240 Sum_probs=104.2
Q ss_pred CCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcHHHH---------------------HHHHc-------CCCeee
Q 007301 304 RAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDL---------------------LEKYG-------TTHLVF 355 (609)
Q Consensus 304 R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nAf~l---------------------L~ryr-------~~~~~F 355 (609)
..+-|||++.+++.+ ..+.|+.+| |.+..-...+ ..||+ -.+|+|
T Consensus 105 ~~~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 105 GETLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 346678888777765 345565555 4444333322 13443 269999
Q ss_pred e----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEc
Q 007301 356 N----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 425 (609)
Q Consensus 356 N----------DDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD 425 (609)
| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d 242 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTE 242 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEc
Confidence 8 6678888776666553 346778999999999999999999888642 63 588888
Q ss_pred ccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007301 426 SKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 426 s~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
.+- .|. +...+ ..-...++.|+++. .|++|-+++..++|+.+.++.|. +.-|++-.+-+.
T Consensus 243 ~dp----~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 243 VDP----ICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred CCc----hhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 641 111 11111 11123468888875 99999988877788888888886 444555555443
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.21 E-value=0.0014 Score=71.38 Aligned_cols=121 Identities=25% Similarity=0.383 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
.+..+|..+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. .+++++|+.. +| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666654 4889999999999999999888754 364 5788888741 11 11
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCc-EEEecCCCC
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKP-IIFSLSNPT 501 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt 501 (609)
...+.+....-+..++.+++.. .|++|-+++.+ .+++++.++.+.....+| +|+-+++|-
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111122467788875 89999987544 579999999875433356 888999997
No 17
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.01 E-value=0.0033 Score=65.81 Aligned_cols=136 Identities=23% Similarity=0.363 Sum_probs=86.0
Q ss_pred CcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhc
Q 007301 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (609)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr 418 (609)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+.. .|.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------
Confidence 46777777777654444 34456666665555555554 899999999999999988888764 243
Q ss_pred CcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccC--CCcEEEe
Q 007301 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFS 496 (609)
Q Consensus 419 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFa 496 (609)
++|+++|+. .+| .....+.|-.......++.++++. .|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 222 111122221111112357787775 8999999887754 66666654322 2347778
Q ss_pred cCCCC
Q 007301 497 LSNPT 501 (609)
Q Consensus 497 LSNPt 501 (609)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 18
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.00 E-value=0.031 Score=61.42 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=87.4
Q ss_pred CCeeee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCc
Q 007301 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (609)
Q Consensus 351 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 420 (609)
.+|+|+ |.-.||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 788887 667899977776655 566778999999999999999999987754 253 5
Q ss_pred EEEEcccCcccCCCccCCchhcchhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 421 IWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 421 i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
++++|.+- .| ...|+ ......++.|+++. .|++|-+++..++++++.+..|. +.-||.-.+-
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887631 11 11111 11122357788875 89999888877788888888775 5557766666
Q ss_pred CCCCCCCCHHHH
Q 007301 500 PTSQSECTAEEA 511 (609)
Q Consensus 500 Pt~~aEct~e~A 511 (609)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 54 45554443
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.93 E-value=0.0091 Score=60.10 Aligned_cols=133 Identities=23% Similarity=0.242 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-|+.. + |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 53 678899999988876 4 3322
Q ss_pred -cchhccccCCCCC-------HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCCCCCCHHHHh
Q 007301 442 -KKPWAHEHEPVKE-------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 512 (609)
Q Consensus 442 -k~~fA~~~~~~~~-------L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~e~A~ 512 (609)
...++++...... =.+.+..++.||||=++. .+..|++..+.+ .-++|..-+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 1122221100000 013344568899997766 669999999988 4789998888 7742 456666
Q ss_pred ccccC
Q 007301 513 TWSQG 517 (609)
Q Consensus 513 ~wT~G 517 (609)
+- .|
T Consensus 140 ~~-~G 143 (217)
T cd05211 140 HE-RG 143 (217)
T ss_pred HH-CC
Confidence 53 45
No 20
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.86 E-value=0.016 Score=63.65 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=93.3
Q ss_pred CCeeee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCc
Q 007301 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (609)
Q Consensus 351 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 420 (609)
.+|+|+ |.-.||+--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 667899998887776 566788999999999999999999987754 363 4
Q ss_pred EEEEcccCcccCCCccCCchhcchhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 421 IWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 421 i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
++++|.+ . .+..+|+. .-...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~--------~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----P--------ICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----h--------hhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 1 12233332 1111246788875 79999999888889988888886 5567766776
Q ss_pred CCCCCCCCHHHHhc
Q 007301 500 PTSQSECTAEEAYT 513 (609)
Q Consensus 500 Pt~~aEct~e~A~~ 513 (609)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 6888877654
No 21
>PLN02477 glutamate dehydrogenase
Probab=96.86 E-value=0.028 Score=61.81 Aligned_cols=186 Identities=22% Similarity=0.217 Sum_probs=127.0
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcH--HHHHHHHcC----CCeee----------ecCCcchHHHHHH
Q 007301 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA--FDLLEKYGT----THLVF----------NDDIQGTASVVLA 368 (609)
Q Consensus 305 ~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nA--f~lL~ryr~----~~~~F----------NDDiQGTaaV~LA 368 (609)
.+..|-..|...|+.++.+..||..=|-=+|++..-. --+.+.|+. .-.|+ .+--..||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 4567888999999999999999965566677765322 113466653 11111 2333458888888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEE-EEcccCcccCCCccCCchhcc-hhc
Q 007301 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK-PWA 446 (609)
Q Consensus 369 gll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~-lvDs~GLi~~~R~~~L~~~k~-~fA 446 (609)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+. |. ++. +.|++|-|+...+ |+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~G--LD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNENG--LDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCCC--CCHHHHHHHH
Confidence 8889999999999999999999999999999988653 63 555 8999999998753 432211 111
Q ss_pred cc------cC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007301 447 HE------HE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (609)
Q Consensus 447 ~~------~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~e~A~~ 513 (609)
+. .+ +.-+-.|.+. .+.||||=+. .++..|++.+..+ .-.||.--+| |+ .+| +++.+.
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 10 00 0012233333 4899999655 5779999999986 6889999999 55 344 445554
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.83 E-value=0.0043 Score=67.64 Aligned_cols=120 Identities=26% Similarity=0.417 Sum_probs=78.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
+..+|+.+++--|.+..+ ++.+.+++|+|||..|..++..+.. .|. ++++++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666544444333 6889999999999999999887753 364 679988874 122 111
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccC--CCcEEEecCCCC
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN--EKPIIFSLSNPT 501 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~--erPIIFaLSNPt 501 (609)
..+.|.....+..++.+++.. .|++|-+++.+ .+++++.++.+.+.. ...+|+=|++|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 111121011112456677764 89999987655 578999999875322 345888999997
No 23
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.79 E-value=0.011 Score=57.43 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhc
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA 446 (609)
.+.+-.++....+|++.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 29 ~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------- 77 (168)
T cd01080 29 AGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------- 77 (168)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-------------------
Confidence 33444555566789999999999998 59888888865 252 58888863
Q ss_pred cccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007301 447 HEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 447 ~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
..+|.+.++. .|++|..++.+.+|+++.++ +.-+|+=++.|-
T Consensus 78 -----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999988899999765 456888888876
No 24
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.70 E-value=0.0014 Score=60.59 Aligned_cols=102 Identities=24% Similarity=0.427 Sum_probs=67.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc---cCCCCCH
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 455 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 455 (609)
.++++.|++++|||.+|.+++..+... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 489999999999999998888877653 65 789999873 332 22333333110 1123566
Q ss_pred HHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEecCCCCC
Q 007301 456 VDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPTS 502 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 502 (609)
.+.++. .|++|-+++.+ -.++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 677775 99999988766 37888888743211 249999999964
No 25
>PLN02494 adenosylhomocysteinase
Probab=96.69 E-value=0.02 Score=64.02 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=93.7
Q ss_pred CCeeee----------cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCc
Q 007301 351 THLVFN----------DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (609)
Q Consensus 351 ~~~~FN----------DDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 420 (609)
.+|++| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 446788888877776 667888999999999999999999998853 363 5
Q ss_pred EEEEcccCcccCCCccCCchhcchhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 421 IWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 421 i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
++++|.+.. +...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 887876411 1111110 0111358888875 89999887777888999999986 6678887887
Q ss_pred CCCCCCCCHHHHhcc
Q 007301 500 PTSQSECTAEEAYTW 514 (609)
Q Consensus 500 Pt~~aEct~e~A~~w 514 (609)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 65 77777665554
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.69 E-value=0.012 Score=61.39 Aligned_cols=138 Identities=17% Similarity=0.269 Sum_probs=90.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
..+-+++=.++.-+++..+..|.+.+++|+|+|.+|..+|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4445666566667778888899999999999999999999998642 63 588888741 1 111
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcE
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRA 519 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~Gra 519 (609)
..+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|. +.-+|+=++..- -++.++.|-+ -+-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011122457777775 89999654 44588999988885 567888776422 4555654433 34578
Q ss_pred EEecCCC
Q 007301 520 IFASGSP 526 (609)
Q Consensus 520 ifASGSP 526 (609)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888866
No 27
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.67 E-value=0.085 Score=58.76 Aligned_cols=180 Identities=15% Similarity=0.098 Sum_probs=120.2
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcH--HHHHHHHcC---CC-eee----------ecCCcchHHHHHH
Q 007301 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA--FDLLEKYGT---TH-LVF----------NDDIQGTASVVLA 368 (609)
Q Consensus 305 ~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nA--f~lL~ryr~---~~-~~F----------NDDiQGTaaV~LA 368 (609)
.+-.|...|.-.||..+...+||+.-|--+|++..-. --+.+.|+. .. -+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 4567888999999999999999999888899876322 225566643 21 233 2334568888888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc
Q 007301 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (609)
Q Consensus 369 gll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~ 448 (609)
++-.+++..|.+|+++||+|.|.|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8899999999999999999999999999999998763 63 3455699999888764 355443322111
Q ss_pred cCC--CCCHHH-------------HHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 449 HEP--VKELVD-------------AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 449 ~~~--~~~L~e-------------~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
... .+.+.+ .+-.++.|+||=+.. .+..|++.++.+.... .-+|.--+|
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~g-~~~V~EgAN 344 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSAT-QNELNGDDARQLVANG-VIAVSEGAN 344 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeeccc-ccccCHHHHHHHHhcC-CeEEECCCC
Confidence 000 011111 111246778875444 5688888888774210 126666666
No 28
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.57 E-value=0.096 Score=58.32 Aligned_cols=189 Identities=17% Similarity=0.146 Sum_probs=129.6
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcH--HHHHHHHcCC---C-ee------e----ecCCcchHHHHHH
Q 007301 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNA--FDLLEKYGTT---H-LV------F----NDDIQGTASVVLA 368 (609)
Q Consensus 305 ~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nA--f~lL~ryr~~---~-~~------F----NDDiQGTaaV~LA 368 (609)
.+..|-..|...|+.++.+.+||..=|-=+|++..-. -=+.+.|+.- . .+ . .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 4556888999999999999999988777888874221 1245676531 1 11 1 1334567777888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEE-cccCcccCCCccCCchh-----c
Q 007301 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHF-----K 442 (609)
Q Consensus 369 gll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv-Ds~GLi~~~R~~~L~~~-----k 442 (609)
++..+++..+.+|++.||+|.|-|..|...|++|.. .|. ++.-+ |++|-|+...+ |+.. |
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHHH
Confidence 888999999999999999999999999999999954 363 45555 99999998753 4322 2
Q ss_pred c-------hhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007301 443 K-------PWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (609)
Q Consensus 443 ~-------~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~e~A~~ 513 (609)
+ .|... ..+.-+- +.+..++.||||=+.. .+..|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 12110 0001122 2344568999996664 78999999998853 45689999998 66 233 445544
No 29
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.34 E-value=0.029 Score=60.34 Aligned_cols=114 Identities=18% Similarity=0.301 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
|+++..+++--|.+..|..|++.++++.|| |+.|--+|++|... .|. +++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888888999999999999999999 89999999888642 243 678888864 112 333
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCC--CCHHHHHHHHccCCCcEEEecCCCCC
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT--FTKEVVEAMASLNEKPIIFSLSNPTS 502 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Ft~evv~~Ma~~~erPIIFaLSNPt~ 502 (609)
.+..+.. ....+|.+++.. +|++|=+++.+.. .+++.++ +.-+|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCCC
Confidence 3333321 123467788876 9999988776432 6776552 3345566888863
No 30
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.17 E-value=0.041 Score=55.76 Aligned_cols=123 Identities=24% Similarity=0.269 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4577777888888899999999999999999999999999988653 54 44559999999988763 33
Q ss_pred hhcc-hhccccC------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CC
Q 007301 440 HFKK-PWAHEHE------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 501 (609)
Q Consensus 440 ~~k~-~fA~~~~------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 501 (609)
.... .+.+... .. -+-.+ +-..+.||||=++ .+++.|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 2211 1111100 00 12223 3445889999777 5779999999988 4889999999 55
No 31
>PLN00203 glutamyl-tRNA reductase
Probab=96.15 E-value=0.018 Score=64.93 Aligned_cols=138 Identities=21% Similarity=0.319 Sum_probs=86.0
Q ss_pred cHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCC-CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhc
Q 007301 340 NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGG-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (609)
Q Consensus 340 nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~-~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr 418 (609)
.||..=+|-|.+.-+ -.|--+|+-+++=-|.+.-|. +|.+.+|+|+|||..|..++..+.. .|.
T Consensus 226 ~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------ 290 (519)
T PLN00203 226 HAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------ 290 (519)
T ss_pred HHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------
Confidence 455555555543211 134445555566556666664 6999999999999999888877653 364
Q ss_pred CcEEEEcccCcccCCCccCCchhcchhcc---ccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccC---CC
Q 007301 419 KKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN---EK 491 (609)
Q Consensus 419 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~---er 491 (609)
++||++++. .+| .......|-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-... .+
T Consensus 291 ~~V~V~nRs----~er---a~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~ 361 (519)
T PLN00203 291 TKMVVVNRS----EER---VAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGG 361 (519)
T ss_pred CeEEEEeCC----HHH---HHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCC
Confidence 679998874 222 2222222210 01123467788875 89999886444 489999999975321 24
Q ss_pred c-EEEecCCCC
Q 007301 492 P-IIFSLSNPT 501 (609)
Q Consensus 492 P-IIFaLSNPt 501 (609)
| +|+=||.|-
T Consensus 362 ~~~~IDLAvPR 372 (519)
T PLN00203 362 KRLFVDISVPR 372 (519)
T ss_pred CeEEEEeCCCC
Confidence 4 566799996
No 32
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.04 E-value=0.096 Score=58.79 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=84.9
Q ss_pred CCeeeecCCcchHHHH-------HHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEE
Q 007301 351 THLVFNDDIQGTASVV-------LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (609)
Q Consensus 351 ~~~~FNDDiQGTaaV~-------LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~l 423 (609)
.+|++|-+---|-+++ ++.+-+.+|.++..|.+.+++|+|.|..|.++|..+.. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899986665554433 44445557788999999999999999999999998864 263 4777
Q ss_pred EcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007301 424 VDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (609)
Q Consensus 424 vDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 500 (609)
+|++-. +. +.... ..-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 766411 10 11000 11112468888886 99999988888899999999997 55566655554
No 33
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.95 E-value=0.055 Score=56.67 Aligned_cols=128 Identities=22% Similarity=0.306 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcch
Q 007301 365 VVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 444 (609)
Q Consensus 365 V~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~ 444 (609)
++-+++..+++..+.++.+.|++|+|+|.+|..++..+.. .| -+++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~----~--------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS----A--------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH----H--------HHH
Confidence 3334566677888889999999999999999998888754 25 2688888851 1 111
Q ss_pred hccc----cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccC-cE
Q 007301 445 WAHE----HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG-RA 519 (609)
Q Consensus 445 fA~~----~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~G-ra 519 (609)
+++. .....++.+.++. .|++|-++ +...++++.++.|. +..+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 1111 0112467788875 99999865 45678999998886 567777665433 2354543332 24 45
Q ss_pred EEecCCC
Q 007301 520 IFASGSP 526 (609)
Q Consensus 520 ifASGSP 526 (609)
+.++|-|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 5567755
No 34
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.95 E-value=0.028 Score=61.95 Aligned_cols=135 Identities=24% Similarity=0.382 Sum_probs=88.3
Q ss_pred CCcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhh
Q 007301 338 NHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417 (609)
Q Consensus 338 ~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeA 417 (609)
-..||..=+|+|.+-- + -.|--+|.-|++--|-++.|. |++.+++|+|||+.|..+|..|... |+
T Consensus 138 FqkAi~~gKrvRseT~-I---~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~----- 202 (414)
T COG0373 138 FQKAISVGKRVRSETG-I---GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV----- 202 (414)
T ss_pred HHHHHHHHHHhhcccC-C---CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC-----
Confidence 3567777777775321 0 123334455555555555544 9999999999999999888888763 65
Q ss_pred cCcEEEEcccCcccCCCccCCchhcchhccc----cCCCCCHHHHHhccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCc
Q 007301 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVDAVNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKP 492 (609)
Q Consensus 418 r~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e~V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erP 492 (609)
++|+++.+ |..|.. .+|+. .-....|.+.+.. .||+|-.+ ++.-+++.+.++.-.+..++=
T Consensus 203 -~~i~IaNR----T~erA~-------~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~ 268 (414)
T COG0373 203 -KKITIANR----TLERAE-------ELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRL 268 (414)
T ss_pred -CEEEEEcC----CHHHHH-------HHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCe
Confidence 78988877 333322 33332 1223466777776 88888654 455689999888765444445
Q ss_pred EEEecCCCC
Q 007301 493 IIFSLSNPT 501 (609)
Q Consensus 493 IIFaLSNPt 501 (609)
+||=|+||-
T Consensus 269 livDiavPR 277 (414)
T COG0373 269 LIVDIAVPR 277 (414)
T ss_pred EEEEecCCC
Confidence 999999998
No 35
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.94 E-value=0.043 Score=54.29 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHHh--CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC
Q 007301 361 GTASVVLAGLISAMKFL--GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~--g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L 438 (609)
.||-=+..++-.+++.. +.+|++.+++|.|.|..|..+|+.+.+. | -++++.|.+. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988653 6 3688888651 123
Q ss_pred chhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCCCCCCHHHHhc
Q 007301 439 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 513 (609)
Q Consensus 439 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~e~A~~ 513 (609)
..++..|.- ..-+..+... .+.|+++=++. +++.|++.++.|. -++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~---~~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA---TVVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC---EEEcchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 1112233333 37999995554 6799999999994 678888888 6632 33445554
No 36
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.91 E-value=0.61 Score=52.30 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=125.5
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcHHH---HHHHHc---CCC-eeeec----------CCcchHHHHH
Q 007301 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYG---TTH-LVFND----------DIQGTASVVL 367 (609)
Q Consensus 305 ~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr---~~~-~~FND----------DiQGTaaV~L 367 (609)
.+..|-..|...||..+.+..||+.=|-=.|++. ++.+ +.+.|+ +.+ .|+-. --..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4566778999999999999999999999999984 3322 344453 222 22211 1234888788
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEE-EEcccCcccCCCccCCchhcc---
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK--- 443 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~-lvDs~GLi~~~R~~~L~~~k~--- 443 (609)
.++-.+++..+.+|++.|++|-|.|..|...|+.+.+. |. +++ +.|++|-|+... .|+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88899999999999999999999999999999988653 63 455 999999999875 3544332
Q ss_pred ------------hhccccCCCC--CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCC
Q 007301 444 ------------PWAHEHEPVK--ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 502 (609)
Q Consensus 444 ------------~fA~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 502 (609)
.|+...+..+ +- +.+-.++.||||=+.. .+..|++-.+.+-+. .-.+|.=-+| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~~-~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCAT-QNEINLEDAKLLIKN-GCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEeccc-cccCCHHHHHHHHHc-CCeEEEecCCCCCC
Confidence 2221000000 11 1122368999997766 679999999988533 4568888888 663
No 37
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.89 E-value=0.051 Score=49.84 Aligned_cols=108 Identities=20% Similarity=0.346 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 447 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~ 447 (609)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... |. .+++++|++ .++ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999998888888777542 31 578888874 111 2222222211
Q ss_pred c--cCCCCCHHHHHhccCCcEEEEccCCCC------CCCHHHHHHHHccCCCcEEEecC-CCC
Q 007301 448 E--HEPVKELVDAVNAIKPTILIGTSGQGR------TFTKEVVEAMASLNEKPIIFSLS-NPT 501 (609)
Q Consensus 448 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt 501 (609)
. .....++.++++. +|++|-+...+- .|.+.. ..+..+++=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 0 0123466666654 899997765432 133222 23667888775 344
No 38
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.077 Score=55.66 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=81.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
..+-.|-.|++..++..+.+++.++++++|+|- +|..+|.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 346667799999999999999999999999997 99999998864 25 2 67788762
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEec-CCCC---CCCCCCHHHHhc
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL-SNPT---SQSECTAEEAYT 513 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt---~~aEct~e~A~~ 513 (609)
..+|.+.++. .|++|-..+.++.|+.+.++ +.-+|+=. .||. -.-++.+|++..
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246677764 99999999999999998875 55566654 3663 112555555543
No 39
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.59 E-value=0.039 Score=60.66 Aligned_cols=132 Identities=17% Similarity=0.292 Sum_probs=78.7
Q ss_pred CcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhc
Q 007301 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 418 (609)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr 418 (609)
..||+.=+|.|.+.-+ + .|--+|+-+|+=-|.+.- .++++.|++++|||.+|..+|..+.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I-~---~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------ 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI-G---HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------ 205 (414)
T ss_pred HHHHHHHHHHHhccCC-C---CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------
Confidence 3555555666653211 1 222234444443333333 45889999999999999888887754 364
Q ss_pred CcEEEEcccCcccCCCccCCchhcchhc-cccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcE-EE
Q 007301 419 KKIWLVDSKGLIVSSRLESLQHFKKPWA-HEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPI-IF 495 (609)
Q Consensus 419 ~~i~lvDs~GLi~~~R~~~L~~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPI-IF 495 (609)
++|+++.+. .+|...| ...|. ....+..+|.+++.. .|++|-+++.+ -++|++.++ .+|. |+
T Consensus 206 ~~I~V~nRt----~~ra~~L---a~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~i 270 (414)
T PRK13940 206 KQIMLANRT----IEKAQKI---TSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFI 270 (414)
T ss_pred CEEEEECCC----HHHHHHH---HHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEE
Confidence 689988883 2332212 11221 111223567777776 99999988766 467866542 4665 46
Q ss_pred ecCCCC
Q 007301 496 SLSNPT 501 (609)
Q Consensus 496 aLSNPt 501 (609)
=|+.|-
T Consensus 271 DLavPR 276 (414)
T PRK13940 271 DISIPQ 276 (414)
T ss_pred EeCCCC
Confidence 799996
No 40
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.59 E-value=0.17 Score=52.58 Aligned_cols=125 Identities=18% Similarity=0.108 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEE-EEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~-lvDs~GLi~~~R~~~L~ 439 (609)
.||-=+.-++-.+++..+.+|++.||+|.|-|..|.+.|++|.+ .|. +++ +.|++|-|+...+ |+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~G--ld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPDG--FT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCCC--CC
Confidence 46666777788888899999999999999999999999999865 363 455 9999999988753 43
Q ss_pred hhcc---------------hhcccc--CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CC
Q 007301 440 HFKK---------------PWAHEH--EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 501 (609)
Q Consensus 440 ~~k~---------------~fA~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 501 (609)
..+. .|.... ...-+-.| +-.++.||||=+. .++..|++.++.+.. +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~-~~~~~~DIliPcA-l~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKK-PWEVPCDIAFPCA-TQNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcc-hhcCCCcEEEecc-ccccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 2211 111000 00012222 2245789999665 567999999999843 35789999998 76
Q ss_pred C
Q 007301 502 S 502 (609)
Q Consensus 502 ~ 502 (609)
+
T Consensus 159 t 159 (254)
T cd05313 159 T 159 (254)
T ss_pred C
Confidence 3
No 41
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.58 E-value=0.078 Score=55.94 Aligned_cols=96 Identities=18% Similarity=0.369 Sum_probs=77.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445678889999999999999999999999988 99999999864 24 4577777641
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 500 (609)
.+|.+.++. .|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 257888887 99999999999999999775 45566666553
No 42
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.53 E-value=0.51 Score=52.73 Aligned_cols=189 Identities=14% Similarity=0.095 Sum_probs=128.5
Q ss_pred CchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcHHH---HHHHHcC----CCeeee----------cCCcchHHHHH
Q 007301 305 AIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFD---LLEKYGT----THLVFN----------DDIQGTASVVL 367 (609)
Q Consensus 305 ~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nAf~---lL~ryr~----~~~~FN----------DDiQGTaaV~L 367 (609)
.+..|...|.-.||..+.+-.||+.=|-=.|++. ++.+ +++.|+. ...++. +--..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556888999999999998889988777788874 3322 4566643 222321 11223888888
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcch---
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP--- 444 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~--- 444 (609)
.++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999998653 64 5567789999998864 35443311
Q ss_pred ------------hccccCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCCCCCCHH
Q 007301 445 ------------WAHEHEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAE 509 (609)
Q Consensus 445 ------------fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~aEct~e 509 (609)
++...+.. -+-.+ +-.++.||||=+.. .+..|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 11110010 01112 22467899996654 67999999999853 34678888888 542 33 44
Q ss_pred HHhc
Q 007301 510 EAYT 513 (609)
Q Consensus 510 ~A~~ 513 (609)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 43
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.47 E-value=0.042 Score=57.21 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch-hcchhc
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWA 446 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~-~k~~fA 446 (609)
.|++.+++..+..++.++++++|||.||..++..+.. .|+ ++|+++|+. ..|.+.|.. .+..|.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4567777766667888999999999999999888875 375 679999984 333222321 111111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 007301 447 H-EHEPVKELVDAVNAIKPTILIGTSGQG 474 (609)
Q Consensus 447 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 474 (609)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 01112345555654 89999987654
No 44
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.33 E-value=0.092 Score=50.76 Aligned_cols=54 Identities=28% Similarity=0.418 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677788888888888899999999999997 9988888877764 24 468888764
No 45
>PLN00106 malate dehydrogenase
Probab=95.17 E-value=0.11 Score=55.46 Aligned_cols=142 Identities=21% Similarity=0.273 Sum_probs=90.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhc
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA 446 (609)
|.-+-|+|..|..-. .||+|+|| |..|.-+|..++. .|+ ...+.|+|.+- ...-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 344677888887655 59999999 9999999987764 254 25799999865 1111112332221 21
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCC-CCCCCHH
Q 007301 447 HEH--EPVKELVDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAE 509 (609)
Q Consensus 447 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~aEct~e 509 (609)
+-. ....++.++++. .|+.|=+.+.+.. ..+++++.+.+++.+.||+.-|||.. ...+...
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~ 147 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAE 147 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence 211 123467888988 8888877766432 34678888899999999999999992 2223444
Q ss_pred HHhccccC--cEEEecCC
Q 007301 510 EAYTWSQG--RAIFASGS 525 (609)
Q Consensus 510 ~A~~wT~G--raifASGS 525 (609)
.+++++.= +-+|.+|.
T Consensus 148 ~~~~~s~~p~~~viG~~~ 165 (323)
T PLN00106 148 VLKKAGVYDPKKLFGVTT 165 (323)
T ss_pred HHHHcCCCCcceEEEEec
Confidence 44454321 34555553
No 46
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.91 E-value=0.058 Score=56.00 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCeeeecCCcchHHHHHHHHHHHHHHhCC--CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 351 THLVFNDDIQGTASVVLAGLISAMKFLGG--SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 351 ~~~~FNDDiQGTaaV~LAgll~Alr~~g~--~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
+..=+|-|.. |++.+++..+. ++++.+++++|||.||-.|+..+.. .|. ++|+++++.
T Consensus 99 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt- 158 (282)
T TIGR01809 99 IWKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN- 158 (282)
T ss_pred cEEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC-
Confidence 3555777744 56777776663 6889999999999998888777654 375 789999873
Q ss_pred cccCCCccCCchhcchhccc--cCCCC---CHHHHHhccCCcEEEEccCCCCCCCHHHH
Q 007301 429 LIVSSRLESLQHFKKPWAHE--HEPVK---ELVDAVNAIKPTILIGTSGQGRTFTKEVV 482 (609)
Q Consensus 429 Li~~~R~~~L~~~k~~fA~~--~~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 482 (609)
.+|.+.|.+. |... ..... ++.+++. ++|++|.++..+-.++.+.+
T Consensus 159 ---~~ka~~La~~---~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 159 ---PDKLSRLVDL---GVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDL 209 (282)
T ss_pred ---HHHHHHHHHH---hhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHh
Confidence 3332223221 1110 00111 2333343 48999999887755554443
No 47
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.74 E-value=0.098 Score=56.48 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=63.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc----ccCCCCCHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----EHEPVKELV 456 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~----~~~~~~~L~ 456 (609)
+...+++|+|+|.+|.++|+.+.. .|. ++.++|++ ..| ++.....|.. ...+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999988864 363 48888874 111 2111112211 111124578
Q ss_pred HHHhccCCcEEEEccCC-----CCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 457 DAVNAIKPTILIGTSGQ-----GRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 457 e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 8999987632 4568999999985 6678887774
No 48
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.41 E-value=0.21 Score=53.96 Aligned_cols=122 Identities=13% Similarity=0.176 Sum_probs=71.9
Q ss_pred CcHHHHHHHHcCCCeeeecCCcchHHHHHH--HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhh
Q 007301 339 HNAFDLLEKYGTTHLVFNDDIQGTASVVLA--GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE 416 (609)
Q Consensus 339 ~nAf~lL~ryr~~~~~FNDDiQGTaaV~LA--gll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~ee 416 (609)
..||..=+|.|.+.- | |.++|.++ ++..+ +.. .+|++.+++++|||+.|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 456666666665321 1 33343333 33333 333 57999999999999998777666654 365
Q ss_pred hcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHH-HHHh-ccCCcEEEEc----cCCCCCCCHHHHHHHHccCC
Q 007301 417 TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV-DAVN-AIKPTILIGT----SGQGRTFTKEVVEAMASLNE 490 (609)
Q Consensus 417 Ar~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~-e~V~-~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e 490 (609)
++|+++.+.-- + .+|.. +. +++. ..+.||+|-. +++.-..+.+.++.. .+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 68998888531 1 22321 11 1111 1368999964 344456777765532 22
Q ss_pred CcEEEecCCCCC
Q 007301 491 KPIIFSLSNPTS 502 (609)
Q Consensus 491 rPIIFaLSNPt~ 502 (609)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
No 49
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.39 E-value=0.084 Score=54.18 Aligned_cols=130 Identities=21% Similarity=0.282 Sum_probs=88.7
Q ss_pred CCcchHHHHHHHHHHHHHHhCCC-CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCcc
Q 007301 358 DIQGTASVVLAGLISAMKFLGGS-LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE 436 (609)
Q Consensus 358 DiQGTaaV~LAgll~Alr~~g~~-L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~ 436 (609)
--+-||-=+..++-.+++..+.. +++.|++|-|.|..|...|+.+.+. |. +=+-+.|++|.|++..+-
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gl 74 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGL 74 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEE
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCc
Confidence 34567878888889999996665 9999999999999999999998764 53 445667888888865421
Q ss_pred CCchhcchhccccCCCCC-----------HHH--HHhccCCcEEEEccCCCCCCCHHHHH-HHHccCCCcEEEecCC-CC
Q 007301 437 SLQHFKKPWAHEHEPVKE-----------LVD--AVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIFSLSN-PT 501 (609)
Q Consensus 437 ~L~~~k~~fA~~~~~~~~-----------L~e--~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-Pt 501 (609)
+.+...+...+....+.. +.+ .+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 75 d~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 75 DVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred hHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 111111111110010111 111 4555799999988 668899999998 674 24689999999 54
No 50
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.35 E-value=0.066 Score=45.60 Aligned_cols=94 Identities=15% Similarity=0.281 Sum_probs=62.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEE-cccCcccCCCccCCchhcchhccccCCC-CCHHHHHhcc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEHEPV-KELVDAVNAI 462 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv-Ds~GLi~~~R~~~L~~~k~~fA~~~~~~-~~L~e~V~~v 462 (609)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+++++.++.|... -. .+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 789999999999999888764 54 34677755 553 12233333333211 11 278899996
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 500 (609)
+|++| ++-.+ ..-+++++.+....+..+|.-++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99887 55555 4567788888667788999888876
No 51
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.82 E-value=0.12 Score=53.24 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=70.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhc-------chhcc---------
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-------KPWAH--------- 447 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k-------~~fA~--------- 447 (609)
.||.|+|+|..|.+||..++.. | .+++++|.+- + .++..+ ..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999887653 5 3688898641 1 111111 00100
Q ss_pred ------ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEE
Q 007301 448 ------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 521 (609)
Q Consensus 448 ------~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~Graif 521 (609)
......++.++++. .|++|=+-...-.+.+++++.+.+......|+ .||.+++ .+.++.+..+-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCcccE
Confidence 00112578888876 78887543222225667777777666555565 3465544 444444433211123
Q ss_pred ecCCCCCcccc
Q 007301 522 ASGSPFDPFEY 532 (609)
Q Consensus 522 ASGSPF~pv~~ 532 (609)
....||.|+..
T Consensus 139 vg~Hf~~p~~~ 149 (287)
T PRK08293 139 LALHFANEIWK 149 (287)
T ss_pred EEEcCCCCCCc
Confidence 34578888753
No 52
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.78 E-value=0.37 Score=47.14 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
.||+--++-|++ |.++..|...++|++|-|--|-|+|+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 366666666666 5788999999999999999999999988653 5 367777663
Q ss_pred hhcchhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHh
Q 007301 440 HFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY 512 (609)
Q Consensus 440 ~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~ 512 (609)
|.+.-=|. +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~ 122 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALE 122 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHH
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeecccc
Confidence 11111111 22223579999986 99999999998999999999997 5556654442 23666665543
No 53
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.62 E-value=1.4 Score=47.04 Aligned_cols=226 Identities=12% Similarity=0.155 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeeecC-C--cchHHHHHHHHHHHHHH---------------
Q 007301 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFNDD-I--QGTASVVLAGLISAMKF--------------- 376 (609)
Q Consensus 315 dEfv~Av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FNDD-i--QGTaaV~LAgll~Alr~--------------- 376 (609)
.|++++..+ .|-+ +|+.-=.+.. ..++-.-.+..+.+.|-- . +.+|=-+++.+|+.+|.
T Consensus 59 ~~~l~~~~~-~~lk-~I~~~~~G~d-~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNE-LGIK-QIAQRSAGFD-TYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhh-cCce-EEEEcccccc-hhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 456666554 1111 2554433333 344444445678888742 2 45566678888876652
Q ss_pred ----hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCC
Q 007301 377 ----LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV 452 (609)
Q Consensus 377 ----~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~ 452 (609)
.|..|.+.+|.|+|.|..|..+|+.+... .|+ ++|.+|... . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 13468899999999999999999998533 253 688888642 1 001 1111 123
Q ss_pred CCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcc-ccCcEEEecCCCC
Q 007301 453 KELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW-SQGRAIFASGSPF 527 (609)
Q Consensus 453 ~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~w-T~GraifASGSPF 527 (609)
.+|.|+++. .|+++=.- ...++|+++.++.|. +..++.=.|. -.+..-++.+++ ..|+.-.|.=-=|
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR---G~~vd~~aL~~aL~~g~i~gaalDV~ 263 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR---GSLVDTKALLDALDNGLIKGAALDTY 263 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC---CcccCHHHHHHHHHhCCeeEEEEecc
Confidence 579999987 89888542 123577888888886 6678776665 334444433333 3455432211111
Q ss_pred --C-cccc-C--Ce-----ecC-CCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 528 --D-PFEY-G--DN-----VFV-PGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 528 --~-pv~~-~--G~-----~~~-p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
+ |+.. + ++ ... -=+..|+.+=|=+|-...-+ -..|...+++.+-+.+.
T Consensus 264 ~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~-----~~~~~~~~~~n~~~~~~ 323 (332)
T PRK08605 264 EFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAA-----VKNLIVDALDATLEVLQ 323 (332)
T ss_pred cCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHH-----HHHHHHHHHHHHHHHHc
Confidence 1 1100 0 00 000 01346888888877443322 35566666666666654
No 54
>PRK05086 malate dehydrogenase; Provisional
Probab=93.55 E-value=0.38 Score=50.89 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=66.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCCCCCHHHHHhc
Q 007301 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNA 461 (609)
Q Consensus 384 ~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~ 461 (609)
.||+|+|| |..|..+|.++... .+. -..+.++|++-. ..+..-++.+. .....- .....++.++++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999998877442 122 256889997522 11100012211 000000 0012467788877
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCC
Q 007301 462 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 462 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
.|++|=+.+.+.- ..++++++|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 8988866665321 4578999999999999999999998
No 55
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.53 E-value=0.72 Score=48.85 Aligned_cols=93 Identities=14% Similarity=0.206 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-+|++..++..+.+|+..+++++|-|. .|.-+|.+|.. .| ..+.+++++
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC-------------
Confidence 34678889999999999999999999999998 99999998864 24 356777664
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
.++|.+.+++ .|++|-..|.++.|+.++|+ +.-+|+=..
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888987 99999999999999999987 667776655
No 56
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.21 E-value=0.16 Score=50.22 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|.+.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478999999999999999999988764 76 799999986
No 57
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.20 E-value=0.054 Score=50.78 Aligned_cols=104 Identities=23% Similarity=0.384 Sum_probs=65.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc-CcccCCCccCCchhcchhccccCCCCCHHHHHhcc
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~-GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (609)
||.|+|| |..|..+|-+|+.. ++ -+.|.|+|.+ ......-.| |.+..-+.-++..-..+..++++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~g~a~D-l~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAEGEALD-LSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHHHHHHH-HHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccceeeehh-hhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 55 3569999986 211111111 322221111111111245566776
Q ss_pred CCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCC
Q 007301 463 KPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 463 kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
.|++|=+.+.+ |- +-+++.+.+++++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998665554 21 2346777888899999999999997
No 58
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.96 E-value=0.2 Score=51.01 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=82.4
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchh-ccccCCCCCHHHHHhccC
Q 007301 386 FLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKELVDAVNAIK 463 (609)
Q Consensus 386 ivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f-A~~~~~~~~L~e~V~~vk 463 (609)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+.....|.+...++ ...-.-..++.|+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 579999 99999999887653 41 123689999986411111111133333222 0011113567888987
Q ss_pred CcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEecCCCC
Q 007301 464 PTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSPF 527 (609)
Q Consensus 464 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT--~GraifASGSPF 527 (609)
.|++|=+.+.++. .-+++.+.|.+++...+++-.|||. .....-+++++ ...-+|++|. .
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~-l 146 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT-L 146 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec-c
Confidence 9988866555432 2468888999999999999999997 34445556663 3344888885 5
Q ss_pred Ccc
Q 007301 528 DPF 530 (609)
Q Consensus 528 ~pv 530 (609)
++.
T Consensus 147 d~~ 149 (263)
T cd00650 147 DPI 149 (263)
T ss_pred hHH
Confidence 543
No 59
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=92.76 E-value=0.2 Score=55.33 Aligned_cols=126 Identities=17% Similarity=0.281 Sum_probs=74.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCC-----CCCHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELVD 457 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~e 457 (609)
.||+|+||||. -..+++-..+.+...+ ....|||+|-+- ..|-+.+...-+.+++. ..+ ..++.|
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 3444443333222233 247899999852 22211111111122221 112 258999
Q ss_pred HHhccCCcEEEEccCCCCC----------------------------------CCHHHHHHHHccCCCcEEEecCCCCCC
Q 007301 458 AVNAIKPTILIGTSGQGRT----------------------------------FTKEVVEAMASLNEKPIIFSLSNPTSQ 503 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~ 503 (609)
|++. +|..|=.-.+||. .=.++++.|.++|+.-+|+=.|||..
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~- 148 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG- 148 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH-
Confidence 9987 7877755544441 12378888999999999999999983
Q ss_pred CCCCHHHHhccccCcEEEecC
Q 007301 504 SECTAEEAYTWSQGRAIFASG 524 (609)
Q Consensus 504 aEct~e~A~~wT~GraifASG 524 (609)
...+-++++++-| +|.+|
T Consensus 149 --ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 --IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred --HHHHHHHHhccCC-EEeeC
Confidence 4455566677444 44443
No 60
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.74 E-value=0.44 Score=50.42 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-+|++.=++..+.+++..+++++|.| -.|.-+|.++.. .|. .+.+++++ .
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------c------
Confidence 356778888889999999999999999999 999999999864 253 35556442 1
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
++|.+.++. +|++|...+.++.+++++|+
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 347788887 99999999999999999996
No 61
>PLN02928 oxidoreductase family protein
Probab=92.33 E-value=1.4 Score=47.44 Aligned_cols=167 Identities=14% Similarity=0.163 Sum_probs=99.1
Q ss_pred cchHHHHHHHHHHHHHH----------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEE
Q 007301 360 QGTASVVLAGLISAMKF----------------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWL 423 (609)
Q Consensus 360 QGTaaV~LAgll~Alr~----------------~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~l 423 (609)
+.+|--+++.+|+.+|. .+..|.++++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777777663 24579999999999999999999998643 64 6777
Q ss_pred EcccCcccCCCccCCchhc----chhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEE
Q 007301 424 VDSKGLIVSSRLESLQHFK----KPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 424 vDs~GLi~~~R~~~L~~~k----~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-.- ...++|+++.+..|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88741 000000000 00 0111111134689999997 89998652 235799999999996 667777
Q ss_pred ecCCCCCCCCCCHHHHhc-c-ccCcEEEecCCCCC--ccccCCeecCCCCCcccccchhhhH
Q 007301 496 SLSNPTSQSECTAEEAYT-W-SQGRAIFASGSPFD--PFEYGDNVFVPGQANNAYIFPGLGL 553 (609)
Q Consensus 496 aLSNPt~~aEct~e~A~~-w-T~GraifASGSPF~--pv~~~G~~~~p~Q~NN~yiFPGlgl 553 (609)
=.|. .++--|+|+- + ..|+.-.|.=-=|. |..-+. .+ =+..|+.+-|=+|-
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~-pL--~~~~nviiTPHia~ 314 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDD-PI--LKHPNVIITPHVAG 314 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCC-hh--hcCCCEEECCcCCC
Confidence 6664 5555555442 2 35665444211111 100010 01 13468888888773
No 62
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.27 E-value=0.38 Score=50.11 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=42.9
Q ss_pred CCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 351 ~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+..-+|-| ..|++.+++..+..+++++++++|||-+|.+||..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45667878 45678888877778889999999998666666555543 475 679999874
No 63
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.22 E-value=0.3 Score=51.16 Aligned_cols=57 Identities=32% Similarity=0.405 Sum_probs=43.6
Q ss_pred CeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 352 HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 352 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+.=+|-|. .|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 101 l~G~NTD~--------~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 101 LRGYNTDG--------TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 44566663 4567788888888999999999999998777665543 375 789999984
No 64
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.19 E-value=0.48 Score=49.57 Aligned_cols=125 Identities=15% Similarity=0.234 Sum_probs=76.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc--CCCCCHHHHHhcc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNAI 462 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e~V~~v 462 (609)
||.|+|+|.+|..+|..++. .|+ ..+|.++|.+-=..+.-..+|.+.. .+.... -...+. +.++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 89999999999999998764 365 2579999985211111111122111 111100 011233 44554
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEecCCC
Q 007301 463 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSP 526 (609)
Q Consensus 463 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--GraifASGSP 526 (609)
.|++|=+.+.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++ -+-+|.+|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999988876521 12577888889999999999999983 44555555431 1347777755
No 65
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.13 E-value=1.3 Score=42.21 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcc
Q 007301 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 443 (609)
Q Consensus 364 aV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~ 443 (609)
-.+..|++..++..|.+++.++++++|.+.. +++-++..|.+ +| ..+.++|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~g-------atV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DG-------ATVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CC-------CEEEEeCCCC---------------
Confidence 3577888999999999999999999998654 34444444433 35 3567777631
Q ss_pred hhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007301 444 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 444 ~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 496 (609)
++|.|+++. .|++|-..+.++.|+.|+|+ +.-+|..
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vid 98 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVIN 98 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEE
Confidence 268889987 99999999999999999998 5556663
No 66
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.08 E-value=0.77 Score=49.12 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=68.8
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc--ccCCCCCHHH
Q 007301 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHEPVKELVD 457 (609)
Q Consensus 381 L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--~~~~~~~L~e 457 (609)
++-.||+|+|| |..|..+|..|+. .++ ...+.|+|.+ .. ..-.-+|.+... ... ......+..+
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v~~~td~~~~~~ 72 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDT-PAKVTGYADGELWEK 72 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCc-CceEEEecCCCchHH
Confidence 34469999999 9999999987753 243 3679999982 21 111012332211 111 1111123468
Q ss_pred HHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCC
Q 007301 458 AVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
+++. .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 73 ~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 73 ALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 8887 8988766555422 4568899999999999999999998
No 67
>PRK08328 hypothetical protein; Provisional
Probab=92.00 E-value=0.085 Score=53.32 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=70.4
Q ss_pred HHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEE
Q 007301 345 LEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (609)
Q Consensus 345 L~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv 424 (609)
++||..++..|..+. -.+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578876666665422 1457789999999999999999999875 76 799999
Q ss_pred cccCcccCCCccCCchhcchhccccCCC----CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE-ecCC
Q 007301 425 DSKGLIVSSRLESLQHFKKPWAHEHEPV----KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSN 499 (609)
Q Consensus 425 Ds~GLi~~~R~~~L~~~k~~fA~~~~~~----~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSN 499 (609)
|.+= +.. .+|..+ --|-.+.-.. ....+.++...|++.|=.. .+.++++-+...-+ +..+|| +.-|
T Consensus 58 D~D~-ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~--~~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQT-PEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF--VGRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCCc-cCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEE--eccCCHHHHHHHHh--cCCEEEECCCC
Confidence 9861 111 123321 1111111100 1233456777888877553 23466655544322 445666 4556
Q ss_pred CC
Q 007301 500 PT 501 (609)
Q Consensus 500 Pt 501 (609)
+.
T Consensus 129 ~~ 130 (231)
T PRK08328 129 FE 130 (231)
T ss_pred HH
Confidence 55
No 68
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.87 E-value=1.4 Score=48.36 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=104.3
Q ss_pred CCCeeeecCC---cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 350 TTHLVFNDDI---QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 350 ~~~~~FNDDi---QGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
..+.+.|--- +..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|.
T Consensus 80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp 147 (381)
T PRK00257 80 AGITWSSAPGCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDP 147 (381)
T ss_pred CCCEEEECCCcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3455554322 2334457889999999999999999999999999999999988643 75 5778886
Q ss_pred cCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEE-cc-------CCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 427 KGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG-TS-------GQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 427 ~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG-~S-------~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
. +.. . . ......+|.|+++. .|+++= +. ...++|+++.+..|. +..++.=.|
T Consensus 148 ~------~~~-~-~-------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 207 (381)
T PRK00257 148 P------RQE-A-E-------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINAS 207 (381)
T ss_pred c------ccc-c-c-------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECC
Confidence 2 110 0 0 01123579999886 887762 11 234799999999997 677888665
Q ss_pred CCCCCCCCCHHHHhcc--ccCcEEEecCCCC--CccccCCeecCCCCCcccccchhhhHHHHHhCC
Q 007301 499 NPTSQSECTAEEAYTW--SQGRAIFASGSPF--DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA 560 (609)
Q Consensus 499 NPt~~aEct~e~A~~w--T~GraifASGSPF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a 560 (609)
. -++--|+|+.. ..|+...|-=-=| +|. .+.... ..|..+-|=++-....++.
T Consensus 208 R----G~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 208 R----GAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGKA 264 (381)
T ss_pred C----CcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHHH
Confidence 4 55555555432 2454333211111 111 111111 1378888877755555543
No 69
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.79 E-value=0.62 Score=49.53 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc---cCCCCCHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 458 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~e~ 458 (609)
+-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=....+.-++.+. ..+... -....++ ++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HH
Confidence 33699999999999999998654 365 23999997532211111012111 111111 1112456 56
Q ss_pred HhccCCcEEEEccCCCCCC-------------------CHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--C
Q 007301 459 VNAIKPTILIGTSGQGRTF-------------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--G 517 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~F-------------------t~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--G 517 (609)
++. .|++|=+.+.++.- -.++++.|.+++..-+++--|||.. .....++++++ -
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~ 146 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPK 146 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCCh
Confidence 776 89998666554322 2477888888998879999999982 22334445542 2
Q ss_pred cEEEecCC
Q 007301 518 RAIFASGS 525 (609)
Q Consensus 518 raifASGS 525 (609)
+-+|++|.
T Consensus 147 ~rviGlgt 154 (321)
T PTZ00082 147 NKVCGMAG 154 (321)
T ss_pred hhEEEecC
Confidence 35777773
No 70
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.75 E-value=0.39 Score=50.86 Aligned_cols=126 Identities=15% Similarity=0.271 Sum_probs=77.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCCCCCHHHHHhcc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI 462 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~v 462 (609)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+. .-...+. +.++.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998764 365 3679999973211111111133222 22111 0011344 55776
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEecCCC
Q 007301 463 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGSP 526 (609)
Q Consensus 463 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT--~GraifASGSP 526 (609)
.|++|=+.+.+.. .=+++++.|.+++...+|+-.|||. +.....+++++ +-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 9999877666421 1156788888999999999999998 34445566665 22336666543
No 71
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.64 E-value=0.28 Score=48.78 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=67.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc-CC-CCCHH
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-VKELV 456 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-~~-~~~L~ 456 (609)
.+|++.||+++|+|..|.+||..++.+ |+ +++.++|.+=+ ..+ +|+.. ..+..+. .. ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~s---NL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EPS---NLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-ccc---ccccc-cCChhhCCCHHHHHHH
Confidence 358899999999999999999999765 76 78999999722 221 35442 1222111 11 12467
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE-ecCCCCCCCCC
Q 007301 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTSQSEC 506 (609)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~aEc 506 (609)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.=||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 77888888865433 333567766655432 233555 55676655443
No 72
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.59 E-value=0.59 Score=48.74 Aligned_cols=38 Identities=13% Similarity=-0.114 Sum_probs=29.5
Q ss_pred cCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHH
Q 007301 537 FVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEA 574 (609)
Q Consensus 537 ~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~a 574 (609)
..||+..|-+.++.+.=++.++..--++.+-+..+.+.
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45778888888899998888888777887777766543
No 73
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=91.52 E-value=1.2 Score=45.00 Aligned_cols=103 Identities=20% Similarity=0.339 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhC---------CCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCC
Q 007301 364 SVVLAGLISAMKFLG---------GSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS 433 (609)
Q Consensus 364 aV~LAgll~Alr~~g---------~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~ 433 (609)
-++-.|++.=|+..+ .+++.++++++|-+. .|.-+|.||.. .| ..+.++|++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 345556666666554 489999999999875 57777777754 35 468899999988877
Q ss_pred CccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHH
Q 007301 434 RLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVE 483 (609)
Q Consensus 434 R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~ 483 (609)
+..++.+.+.+. ...-++|.|.++. +|++|-.-+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 644332222110 0111248898987 9999999999998 8999998
No 74
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.45 E-value=0.4 Score=50.21 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=43.3
Q ss_pred CCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 351 ~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+.+=+|-|- .|++.+++..+.++++.+++++|||-||.+|+-.+.+ .|. ++|+++|+.
T Consensus 103 ~l~G~NTD~--------~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 103 HTTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred cEEEEcCCH--------HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 345566664 3567777755556888999999999999988877764 365 789999983
No 75
>PRK08223 hypothetical protein; Validated
Probab=91.28 E-value=0.38 Score=50.89 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcE
Q 007301 342 FDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 421 (609)
Q Consensus 342 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i 421 (609)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 5566777665555544322 568899999999999999999998876 76 789
Q ss_pred EEEcccCcccCCCc-------cCCchhcchhccc-----c---------CCC--CCHHHHHhccCCcEEEEccCCCCC--
Q 007301 422 WLVDSKGLIVSSRL-------ESLQHFKKPWAHE-----H---------EPV--KELVDAVNAIKPTILIGTSGQGRT-- 476 (609)
Q Consensus 422 ~lvDs~GLi~~~R~-------~~L~~~k~~fA~~-----~---------~~~--~~L~e~V~~vkPtvLIG~S~~~g~-- 476 (609)
.++|.+=+=.++-. +++-..|..-|.+ . ..+ .++.|.++. .|++|=.+ ...
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~--D~~~~ 130 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGL--DFFEF 130 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECC--CCCcH
Confidence 99998733222110 1122222222211 0 111 356677765 78887333 321
Q ss_pred CCHHHHHHHHccCCCcEEEecCC
Q 007301 477 FTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 477 Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
=+.-.|-..+.....|.|.+-..
T Consensus 131 ~~r~~ln~~c~~~~iP~V~~~~~ 153 (287)
T PRK08223 131 DARRLVFAACQQRGIPALTAAPL 153 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc
Confidence 15667777777788999997443
No 76
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.21 E-value=0.83 Score=51.87 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=93.4
Q ss_pred ccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCC---CcHHHHHHHHcCCCeeeecCCcchHHHH
Q 007301 290 KLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFAN---HNAFDLLEKYGTTHLVFNDDIQGTASVV 366 (609)
Q Consensus 290 ~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~---~nAf~lL~ryr~~~~~FNDDiQGTaaV~ 366 (609)
.|.++-.++|+-|+-.. .++++.+ .++ .=.+|-+|.+-. ...+ +..--+-.|-|=-||.
T Consensus 82 ~l~~g~~li~~l~p~~~----~~l~~~l----~~~--~it~ia~e~vpr~sraq~~--------d~lssma~IAGy~Av~ 143 (509)
T PRK09424 82 LLREGATLVSFIWPAQN----PELLEKL----AAR--GVTVLAMDAVPRISRAQSL--------DALSSMANIAGYRAVI 143 (509)
T ss_pred hcCCCCEEEEEeCcccC----HHHHHHH----HHc--CCEEEEeecccccccCCCc--------ccccchhhhhHHHHHH
Confidence 45556677777666321 2333333 221 224466666532 1222 2222334455655555
Q ss_pred HHHHHHHHHHhC-----CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccC---C
Q 007301 367 LAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLES---L 438 (609)
Q Consensus 367 LAgll~Alr~~g-----~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~---L 438 (609)
.|+-.-.--..| ......|++|+|||.+|++.+..... .| | +++.+|.. ..|.+. +
T Consensus 144 ~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aesl 207 (509)
T PRK09424 144 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESM 207 (509)
T ss_pred HHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHc
Confidence 554322111111 13458999999999999887665543 36 2 47777763 111110 0
Q ss_pred ------------chhcchhccccCCCCCHHHHH-----hcc-CCcEEEEccCCCC-----CCCHHHHHHHHccCCCcEEE
Q 007301 439 ------------QHFKKPWAHEHEPVKELVDAV-----NAI-KPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 439 ------------~~~k~~fA~~~~~~~~L~e~V-----~~v-kPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIF 495 (609)
......|++... .++.+.. +.+ +.|++|.+++.+| +++++.++.|. ..-+|.
T Consensus 208 GA~~v~i~~~e~~~~~~gya~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIV 282 (509)
T PRK09424 208 GAEFLELDFEEEGGSGDGYAKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIV 282 (509)
T ss_pred CCeEEEeccccccccccchhhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEE
Confidence 001112333211 1222221 111 4999999999866 77999999997 555666
Q ss_pred ecCCCC-CCCCCCH
Q 007301 496 SLSNPT-SQSECTA 508 (609)
Q Consensus 496 aLSNPt-~~aEct~ 508 (609)
=++-+. ...|++.
T Consensus 283 dvg~~~GG~~e~t~ 296 (509)
T PRK09424 283 DLAAENGGNCELTV 296 (509)
T ss_pred EEccCCCCCccccc
Confidence 677653 3345553
No 77
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.03 E-value=0.3 Score=46.17 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=52.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcc--hhccc---cCC---CCCHH
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--PWAHE---HEP---VKELV 456 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~--~fA~~---~~~---~~~L~ 456 (609)
||.|+|||+.|+.+|..+... | .++.|.+++.-.. +.++..+. .|... .+. ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 689999999999999988763 4 5677776653111 11211111 11110 111 25899
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccC--CCcEEE
Q 007301 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIF 495 (609)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIF 495 (609)
++++. +|++| +.. +-.+-+++++.++.+- ..+||+
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhccCCCCEEEE
Confidence 99986 77766 333 3356789999998744 344443
No 78
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.91 E-value=2.2 Score=46.83 Aligned_cols=117 Identities=16% Similarity=0.214 Sum_probs=83.9
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ ++..+|.. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--c
Confidence 3455567889999889889999999999999999999999998643 75 67778852 111 0
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEE---ccC-----CCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHH
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIG---TSG-----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEA 511 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A 511 (609)
. ......+|.|+++. .|+++= ++. .-++|+++.++.|. +..|++=.|. -+.--|+|
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~A 216 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTA 216 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHH
Confidence 0 00123579999976 898872 122 34789999999997 6778886654 55555555
Q ss_pred h
Q 007301 512 Y 512 (609)
Q Consensus 512 ~ 512 (609)
+
T Consensus 217 L 217 (378)
T PRK15438 217 L 217 (378)
T ss_pred H
Confidence 5
No 79
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=90.80 E-value=0.77 Score=46.06 Aligned_cols=38 Identities=37% Similarity=0.535 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 468899999999999999999999875 76 899999987
No 80
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.77 E-value=0.55 Score=51.00 Aligned_cols=102 Identities=23% Similarity=0.298 Sum_probs=63.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCC-c-------cCCchhcchhccc--
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-L-------ESLQHFKKPWAHE-- 448 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R-~-------~~L~~~k~~fA~~-- 448 (609)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999875 76 78999998732 1111 0 0111112111110
Q ss_pred ---cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007301 449 ---HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 449 ---~~---------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 496 (609)
.+ .+ .++.+.++. .|++|.++... =+.-.|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 01 11 245566665 78888776532 24556667777777888875
No 81
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=90.70 E-value=1 Score=43.39 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=74.6
Q ss_pred HHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCC
Q 007301 374 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK 453 (609)
Q Consensus 374 lr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~ 453 (609)
.+..+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 35567889999999999999999999999743 64 6888888521 100 1111111235
Q ss_pred CHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhc-c-ccCcEE
Q 007301 454 ELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAI 520 (609)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~-w-T~Grai 520 (609)
+|.|+++. .|+++=.- ...+.|+++.++.|. +.-++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 89887442 224899999999997 5667775554 5555555443 2 345554
No 82
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=90.60 E-value=1.1 Score=47.38 Aligned_cols=115 Identities=12% Similarity=0.163 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc
Q 007301 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (609)
Q Consensus 369 gll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~ 448 (609)
|.+++...... ...+++++|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44555444322 346899999999998888877543 254 678888773 222 22222222111
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCcEEEecCCCC-CCCCCCHHH
Q 007301 449 ----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (609)
Q Consensus 449 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~e~ 510 (609)
.....++.++++. .|++|-++.. ..+|+.+.++ +.-.|.++.-.+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678999975 9999977543 2467777765 233455554322 257777765
No 83
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.58 E-value=2 Score=44.88 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..||.|+|+|..|.++|..+... | .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 356777764
No 84
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.55 E-value=1.2 Score=47.30 Aligned_cols=127 Identities=19% Similarity=0.309 Sum_probs=77.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc---CCCCCHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 458 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~ 458 (609)
+..||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=......-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 44699999999999999988764 354 24999997421111110012222 1111110 1124565 6
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 007301 459 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--GraifA 522 (609)
++. .|++|=+.+.+.. +=+++.+.|.+++..-+++=.|||. ......++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 776 8988876665432 2348899999999999888889998 233455556552 134777
Q ss_pred cCCC
Q 007301 523 SGSP 526 (609)
Q Consensus 523 SGSP 526 (609)
+|+-
T Consensus 146 ~gt~ 149 (319)
T PTZ00117 146 MAGV 149 (319)
T ss_pred ecch
Confidence 7743
No 85
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.43 E-value=0.43 Score=51.16 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.+|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 468899999999999999999999875 76 7999999973
No 86
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.29 E-value=0.66 Score=47.92 Aligned_cols=87 Identities=23% Similarity=0.367 Sum_probs=53.5
Q ss_pred HHHHHHHHH-hCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhc
Q 007301 368 AGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 446 (609)
Q Consensus 368 Agll~Alr~-~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA 446 (609)
.|++++++. .+..+.+.+++++|||.+|.+++..+.. .|+ ++++++++. .++ .......+.
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~~ 168 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLFG 168 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 456777764 5678999999999999888888877763 364 679999884 222 212222221
Q ss_pred ccc-CCC-CCHHHHHhccCCcEEEEccCCC
Q 007301 447 HEH-EPV-KELVDAVNAIKPTILIGTSGQG 474 (609)
Q Consensus 447 ~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 474 (609)
... -+. .++.+.+. +.|++|-++..+
T Consensus 169 ~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 169 ALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hccceeecccchhccc--cCCEEEECCcCC
Confidence 110 011 12334444 389999887655
No 87
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.12 E-value=1.8 Score=46.32 Aligned_cols=92 Identities=13% Similarity=0.275 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-+|++.=++..|.+++.++|+|+|.| ..|..+|.+|... | ..+++++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C-----
Confidence 356778888889999999999999999996 9999999999753 5 357777653 1
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
.++.|+++. .|++|=.-+.++.+++++++ +.-||.=.|
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 268899987 99999999999999988854 666777666
No 88
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=90.10 E-value=7 Score=43.61 Aligned_cols=180 Identities=23% Similarity=0.222 Sum_probs=120.8
Q ss_pred cCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCc--HHHHHHHHcCC-----Ceee----------ecCCcchHHH
Q 007301 303 KRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHN--AFDLLEKYGTT-----HLVF----------NDDIQGTASV 365 (609)
Q Consensus 303 ~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~n--Af~lL~ryr~~-----~~~F----------NDDiQGTaaV 365 (609)
|..+..|-.+|...||+++.+.-||+.-|-=+|+...- =-=+.+.|+.- ..+| .+----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 34677888999999999999999999999999998632 11245666431 2222 1222234433
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchh
Q 007301 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 445 (609)
Q Consensus 366 ~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f 445 (609)
+.-+.-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+-|++|-|++.- .|+..+...
T Consensus 190 v~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~ 256 (411)
T COG0334 190 VFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLE 256 (411)
T ss_pred hHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHH
Confidence 3333348888889889999999999999999888888643 63 5667778999888763 354332221
Q ss_pred ccc----------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCC
Q 007301 446 AHE----------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 502 (609)
Q Consensus 446 A~~----------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 502 (609)
.++ .+.+.+ |.+-.+..||||=+.. ++..|++-.+.+.+. +|.=-+| |++
T Consensus 257 ~~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t 317 (411)
T COG0334 257 LKERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT 317 (411)
T ss_pred HhhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC
Confidence 110 111112 3344467899996654 678999998888633 8888888 763
No 89
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.03 E-value=1.2 Score=47.20 Aligned_cols=84 Identities=17% Similarity=0.325 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcchH-HHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGsA-g~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-.|++.-++..+.++++.+++++|.|.- |.-+|.+|.. .|. .+.+++++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 345678888999999999999999999999998 9999999864 253 45555442
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.++. .|++|-..+.++.|+.++++
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999998887
No 90
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.02 E-value=0.5 Score=50.93 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=32.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 57889999999999999999999765 76 789999986
No 91
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=89.74 E-value=0.71 Score=51.13 Aligned_cols=124 Identities=18% Similarity=0.315 Sum_probs=73.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhc-CCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCC-----CCCHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQT-NMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~-G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 456 (609)
.||+|+||||+ -.-.|+..+.+.. .+ ....|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l----~~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEEL----PISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhC----CCCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444444444322 33 34789999964 44422222222222222 112 24788
Q ss_pred HHHhccCCcEEEEcc--------------------------CCCCCCC--------HHHHHHHHccCCCcEEEecCCCCC
Q 007301 457 DAVNAIKPTILIGTS--------------------------GQGRTFT--------KEVVEAMASLNEKPIIFSLSNPTS 502 (609)
Q Consensus 457 e~V~~vkPtvLIG~S--------------------------~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 502 (609)
||++. +|..|-.- |+||.|. .++++.|.++|+..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 88887 77666332 3345444 38899999999999999999998
Q ss_pred CCCCCHHHHhccccCcEEEec
Q 007301 503 QSECTAEEAYTWSQGRAIFAS 523 (609)
Q Consensus 503 ~aEct~e~A~~wT~GraifAS 523 (609)
..+ .+-+++++...-++.+
T Consensus 147 -di~-t~a~~~~~p~~rviG~ 165 (425)
T cd05197 147 -GEV-TEAVRRYVPPEKAVGL 165 (425)
T ss_pred -HHH-HHHHHHhCCCCcEEEE
Confidence 222 2334455533334443
No 92
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.69 E-value=2 Score=45.70 Aligned_cols=84 Identities=15% Similarity=0.259 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-.|++..++..+.+|+..+++++|.+. .|.-+|.+|.. .| ..+.+++++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc-------------
Confidence 34678889999999999999999999999998 89999998864 24 346666652
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1357888887 99999999999999999887
No 93
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.62 E-value=1.4 Score=46.47 Aligned_cols=94 Identities=19% Similarity=0.352 Sum_probs=73.5
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-.|++.=++..+.+++..+++++|-+ .-|.-+|.++... | ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC------------
Confidence 33466778889999999999999999999999 7888888777542 4 346666653
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
..+|.+.++. +|++|+.-+.++.+|+++|+ +.-+|.=.+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVg 224 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVG 224 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEee
Confidence 0368899987 99999999989999999984 555665444
No 94
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.25 E-value=0.58 Score=50.22 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|++.||+++|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 468899999999999999999998765 76 799999996
No 95
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.22 E-value=0.82 Score=48.25 Aligned_cols=47 Identities=34% Similarity=0.521 Sum_probs=38.6
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 369 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 369 gll~Alr~~g--~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
|+..+|+..+ ...+++++|++|||-|+.+|+-.+.++ |. ++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 5678888766 456689999999999999998887764 65 78999998
No 96
>PRK15076 alpha-galactosidase; Provisional
Probab=89.17 E-value=0.89 Score=50.38 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=73.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch-hcchhccccCC-----CCCHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAHEHEP-----VKELVD 457 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~-~k~~fA~~~~~-----~~~L~e 457 (609)
.||.|+|||+.| .+..++..+....++ +-..++|+|.+- +|.+.... .+..++..... ..++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999985 333343333322233 235899999752 22110000 01111110111 247888
Q ss_pred HHhccCCcEEEEccCCCCCC-------------------------------------CHHHHHHHHccCCCcEEEecCCC
Q 007301 458 AVNAIKPTILIGTSGQGRTF-------------------------------------TKEVVEAMASLNEKPIIFSLSNP 500 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~F-------------------------------------t~evv~~Ma~~~erPIIFaLSNP 500 (609)
+++. .|++|=..+++|.- =.|+++.|.++|+..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8877 78777555554321 14778888899999999999999
Q ss_pred CCCCCCCHHHHhccccCcEEEecC-CCCC
Q 007301 501 TSQSECTAEEAYTWSQGRAIFASG-SPFD 528 (609)
Q Consensus 501 t~~aEct~e~A~~wT~GraifASG-SPF~ 528 (609)
.. +..+-++.+++ .-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 82 22223335543 4477777 6644
No 97
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.00 E-value=0.65 Score=42.49 Aligned_cols=35 Identities=37% Similarity=0.596 Sum_probs=30.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999876 76 899999987
No 98
>PLN02306 hydroxypyruvate reductase
Probab=88.96 E-value=5.4 Score=43.86 Aligned_cols=214 Identities=16% Similarity=0.202 Sum_probs=121.4
Q ss_pred eeeeecCCCCcHHHHHHHHcCCCeeeecCC---cchHHHHHHHHHHHHHHh---------------------CCCCCCce
Q 007301 330 LIQFEDFANHNAFDLLEKYGTTHLVFNDDI---QGTASVVLAGLISAMKFL---------------------GGSLADQR 385 (609)
Q Consensus 330 lIqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~~---------------------g~~L~d~r 385 (609)
+|+.--.+..| .++-.--+..+.+.|--- ..+|=-+++-+|+..|-. |..|.+++
T Consensus 89 ~I~~~~~G~D~-iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gkt 167 (386)
T PLN02306 89 AFSNMAVGYNN-VDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQT 167 (386)
T ss_pred EEEECCccccc-ccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCE
Confidence 36554344333 444444456788888632 234445677777776532 34588999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc--------c--cCCCCCH
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--------E--HEPVKEL 455 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--------~--~~~~~~L 455 (609)
+.|+|.|..|..+|+++..+| |+ +++.+|...- . .+..+...+.. + .....+|
T Consensus 168 vGIiG~G~IG~~vA~~l~~~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L 230 (386)
T PLN02306 168 VGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSM 230 (386)
T ss_pred EEEECCCHHHHHHHHHHHhcC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCH
Confidence 999999999999999986543 64 6888887421 0 01110001100 0 0112589
Q ss_pred HHHHhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhc-c-ccCcEEEecCC-CC-
Q 007301 456 VDAVNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAIFASGS-PF- 527 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~-w-T~GraifASGS-PF- 527 (609)
.|+++. .|+++-. ....|.|+++.++.|. +.-++.=.| ..++-=|+|+. + ..|+.-.| |. =|
T Consensus 231 ~ell~~--sDiV~lh~Plt~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~gA-aLDVf~ 300 (386)
T PLN02306 231 EEVLRE--ADVISLHPVLDKTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMFRV-GLDVFE 300 (386)
T ss_pred HHHHhh--CCEEEEeCCCChhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCeeEE-EEeCCC
Confidence 999987 9998873 2334799999999996 556666554 45555555542 2 24554332 21 01
Q ss_pred -CccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 528 -DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 528 -~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
+|. .+. .--+..|+.+-|=+|-...-+ ...|...+++-+.....
T Consensus 301 ~EP~-~~~---~L~~~pNVilTPHiag~T~e~-----~~~~~~~~~~ni~~~~~ 345 (386)
T PLN02306 301 DEPY-MKP---GLADMKNAVVVPHIASASKWT-----REGMATLAALNVLGKLK 345 (386)
T ss_pred CCCC-Ccc---hHhhCCCEEECCccccCcHHH-----HHHHHHHHHHHHHHHHc
Confidence 111 011 012456899999877432221 23445555555555544
No 99
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.93 E-value=0.96 Score=46.94 Aligned_cols=127 Identities=18% Similarity=0.325 Sum_probs=72.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc--cCCCCCHHHHHhc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNA 461 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~ 461 (609)
.||.|+|||..|.++|..++. .|+ . .++|+|.+-=..+.....+.+........ .....+. ++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 489999999999999998764 254 2 79999983111111000011110000000 0112355 55665
Q ss_pred cCCcEEEEccCCCC--------------CCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccC---cEEEecC
Q 007301 462 IKPTILIGTSGQGR--------------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG---RAIFASG 524 (609)
Q Consensus 462 vkPtvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~G---raifASG 524 (609)
.|++|=+.+.+. -.-+++++.|.+.+...+++-.|||. .....-+++++ | +-+|++|
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~~~viG~g 144 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPKNRVIGMA 144 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCcccEEEeC
Confidence 898884333332 12356777788889999888889997 22233344444 3 5688888
Q ss_pred CCCC
Q 007301 525 SPFD 528 (609)
Q Consensus 525 SPF~ 528 (609)
.-.+
T Consensus 145 t~ld 148 (307)
T PRK06223 145 GVLD 148 (307)
T ss_pred CCcH
Confidence 5443
No 100
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=88.77 E-value=2.9 Score=44.81 Aligned_cols=111 Identities=24% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCeeeecCC---cchHHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHh
Q 007301 351 THLVFNDDI---QGTASVVLAGLISAMK------------------FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQ 409 (609)
Q Consensus 351 ~~~~FNDDi---QGTaaV~LAgll~Alr------------------~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~ 409 (609)
-+.|+|-.- +..|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 345555443 2344457888888887 567789999999999999999999998654
Q ss_pred cCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHH
Q 007301 410 TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAM 485 (609)
Q Consensus 410 ~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~M 485 (609)
|+ ++..+|.. ..+. .. -........+|.|.++. .|+|.-.- ...|.++++-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 65 67788872 1110 00 00112234679999987 99988542 33479999999999
Q ss_pred H
Q 007301 486 A 486 (609)
Q Consensus 486 a 486 (609)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 5
No 101
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.60 E-value=1.7 Score=46.38 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=69.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc--ccCCCccCCchhcchhccccCCCCCHHHHHhc
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL--i~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (609)
||.|+|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..+...-+|.+..-++.+...-..+..|+++.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532223346999998641 11111112443332333221111456788888
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccC-CCcEEEecCCCC
Q 007301 462 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLN-EKPIIFSLSNPT 501 (609)
Q Consensus 462 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 501 (609)
.|++|=+.+.+ |- .-+++.+.|++++ +.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888565554 31 1257788888894 999999999997
No 102
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.51 E-value=1.7 Score=45.03 Aligned_cols=31 Identities=39% Similarity=0.709 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
++|.|+|+|..|.+||..++.. |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5799999999999999988653 53 5888885
No 103
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.42 E-value=0.9 Score=46.79 Aligned_cols=32 Identities=38% Similarity=0.574 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+||.|+|+|..|.+||..+... | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988753 5 358888874
No 104
>PRK07574 formate dehydrogenase; Provisional
Probab=88.23 E-value=5.9 Score=43.62 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=85.5
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHH
Q 007301 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (609)
Q Consensus 378 g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 457 (609)
+..|.+++|.|+|.|..|..||+.+... |+ +++.+|+... .. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch-h-h---Hhhc--CceecCCHHH
Confidence 3458999999999999999999988653 64 5778887432 00 0 0 0000 0111357999
Q ss_pred HHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEecCCCCCccc
Q 007301 458 AVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFDPFE 531 (609)
Q Consensus 458 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~--wT~GraifASGSPF~pv~ 531 (609)
+++. .|+++=.- ...++|+++.+..|. +..++.=.|. .++.-|+|+. ...|+.-.|..-=|.+--
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaLDV~~~EP 315 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAGDVWFPQP 315 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEEecCCCCC
Confidence 9987 89887432 123689999999996 5677776654 5555555542 245666555443222110
Q ss_pred c-CCeecCCCCCcccccchhhh
Q 007301 532 Y-GDNVFVPGQANNAYIFPGLG 552 (609)
Q Consensus 532 ~-~G~~~~p~Q~NN~yiFPGlg 552 (609)
. ....+ -+..|+.+-|=++
T Consensus 316 lp~d~pL--~~~pNvilTPHia 335 (385)
T PRK07574 316 APADHPW--RTMPRNGMTPHIS 335 (385)
T ss_pred CCCCChH--HhCCCeEECCccc
Confidence 0 01111 1345788888766
No 105
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.96 E-value=2.8 Score=44.68 Aligned_cols=102 Identities=23% Similarity=0.321 Sum_probs=67.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccC--CCCCHHHHHhc
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE--PVKELVDAVNA 461 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~--~~~~L~e~V~~ 461 (609)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+ +..-...| |.+.. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~a~g~alD-L~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-NTPGVAAD-LSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-ccceeehH-hHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999887743 365 3689999998 32222122 54433 1111110 11346677887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCC
Q 007301 462 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 462 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
.|++|=+.+.+ |- .-+++++.+.+++...+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666654 21 2246777888899999999999997
No 106
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.61 E-value=1.2 Score=49.18 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=71.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc------CCCCCHHHH
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH------EPVKELVDA 458 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~------~~~~~L~e~ 458 (609)
||.|+|||+.|.+.+- +..+.....+ +-.+++|+|.+- +|.+.+...-+.++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 1111111111 235799999742 22111111111111111 112578899
Q ss_pred HhccCCcEEEEccCCC---------------CCCC---------------------HHHHHHHHccCCCcEEEecCCCCC
Q 007301 459 VNAIKPTILIGTSGQG---------------RTFT---------------------KEVVEAMASLNEKPIIFSLSNPTS 502 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~erPIIFaLSNPt~ 502 (609)
++. .|++|=.-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 88777544322 2221 27777777888999999999998
Q ss_pred CCCCCHHHHhccccCcEEEecC-CCC
Q 007301 503 QSECTAEEAYTWSQGRAIFASG-SPF 527 (609)
Q Consensus 503 ~aEct~e~A~~wT~GraifASG-SPF 527 (609)
..+ .+-+++.++ .-++.+| +|+
T Consensus 149 -~i~-t~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 149 -AEL-TWALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred -HHH-HHHHHHhCC-CCEEEECCcHH
Confidence 222 233446665 4467666 443
No 107
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.49 E-value=1.8 Score=45.58 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=73.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc---ccCCCCCHHHHHh
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAVN 460 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V~ 460 (609)
.||.|+|+|..|.++|-.++.. |+ + ++.++|..--+.+.+.-++.+ ...+.. ......++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 3799999999999999987652 54 2 599999832222211000110 001100 0011246766 55
Q ss_pred ccCCcEEEEccCCC---C-C------CC----HHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEecC
Q 007301 461 AIKPTILIGTSGQG---R-T------FT----KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASG 524 (609)
Q Consensus 461 ~vkPtvLIG~S~~~---g-~------Ft----~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--GraifASG 524 (609)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 5 78887555433 1 1 23 45666688889999999999998 455555666642 23377777
Q ss_pred C
Q 007301 525 S 525 (609)
Q Consensus 525 S 525 (609)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 108
>PRK14851 hypothetical protein; Provisional
Probab=87.38 E-value=2.2 Score=50.11 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=78.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCC--Cc-----cCCchhcchhccc---
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS--RL-----ESLQHFKKPWAHE--- 448 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~--R~-----~~L~~~k~~fA~~--- 448 (609)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|-+=+-.++ |. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 568899999999999999999998875 76 899999986332221 10 1121222222211
Q ss_pred --c---------CCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC----------CCCCCCC
Q 007301 449 --H---------EPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS----------NPTSQSE 505 (609)
Q Consensus 449 --~---------~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS----------NPt~~aE 505 (609)
. ..+ .++.+.++. .|++|-.......-++..|...+..+..|+|++-. +|. .
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~---~ 182 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ---G 182 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---C
Confidence 0 111 246667775 89988544321111244676778888999999754 665 5
Q ss_pred CCHHHHhccccC
Q 007301 506 CTAEEAYTWSQG 517 (609)
Q Consensus 506 ct~e~A~~wT~G 517 (609)
...++.|.+.++
T Consensus 183 ~~~~~~~~~~~~ 194 (679)
T PRK14851 183 MGFDDYFNIGGK 194 (679)
T ss_pred CCHhHhccCCCC
Confidence 778888888777
No 109
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.15 E-value=3.4 Score=43.86 Aligned_cols=85 Identities=18% Similarity=0.233 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-+|++.=++..+.+++.+++|++|-+ -.|.-+|.+|.. .|. .+.+++++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 33466788889999999999999999999998 889999988864 242 34445442 1
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
++|.+.++. +|++|-..+.++.|+.|+|+
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 247788887 99999999999999999998
No 110
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=86.99 E-value=2.3 Score=42.27 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=59.1
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhc---cc-c--C--CCCCH
Q 007301 385 RFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---HE-H--E--PVKEL 455 (609)
Q Consensus 385 rivf~G-AGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA---~~-~--~--~~~~L 455 (609)
||.|+| +|..|..+|..+.+. | .+++++|++ .++ +......+. .. . . ...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 699997 899999999988653 4 467777663 111 211111111 00 0 0 11356
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCC
Q 007301 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 503 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 503 (609)
.|+++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788875 78776 44433 3457888888654344799999999864
No 111
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=86.50 E-value=1.2 Score=44.37 Aligned_cols=109 Identities=17% Similarity=0.321 Sum_probs=67.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCC-----CCCHHHH
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELVDA 458 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~e~ 458 (609)
||+|+||||+- ...++...+.....+ ....|+|+|.+ .+|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~--~~~~l~~~l~~~~~l----~~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTY--FPLLLLGDLLRTEEL----SGSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCC--HHHHHHHHHHCTTTS----TEEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHh--hHHHHHHHHhcCccC----CCcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 79999999985 445555555443444 34689999985 23321112222333332 122 2589999
Q ss_pred HhccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHccCCCcEEEecCCCCC
Q 007301 459 VNAIKPTILIGTSGQG----------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 502 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~----------------------------g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 502 (609)
++. +|.+|=.-.+| |.|. .|+.+.|.+.|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 88887443333 2222 58899999999999999999998
Q ss_pred CCCCC
Q 007301 503 QSECT 507 (609)
Q Consensus 503 ~aEct 507 (609)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 112
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.49 E-value=1.5 Score=45.75 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=40.8
Q ss_pred CeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 352 HLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 352 ~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..=||-|. .|++.+++..+.+. +.+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDY--------IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45566663 35667777666653 4699999999999888877754 365 679999984
No 113
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.33 E-value=4.4 Score=43.29 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=77.4
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc--cCCCccCCchhcchhccccCCCCCHHHHHhc
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (609)
||+|.|| |..|..+|..|+.. |+--.+....++++|.+.-. ..+..-++.+..-++..+..-..++.++++.
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC
Confidence 6999999 99999999987652 44100011379999985311 0110001222111221111112578888987
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCcEEEecCCCCCCCCCCHHHHhccccC--cEEEecC
Q 007301 462 IKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASG 524 (609)
Q Consensus 462 vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~aEct~e~A~~wT~G--raifASG 524 (609)
+|++|=+.+.+.. .| +++.+.|.+++ ..-||+-.|||. ....--+++++.| +-.|.||
T Consensus 79 --aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~g 153 (325)
T cd01336 79 --VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTAL 153 (325)
T ss_pred --CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEee
Confidence 9999866665422 23 56778888885 689999999997 3444445555422 1126566
Q ss_pred CCCC
Q 007301 525 SPFD 528 (609)
Q Consensus 525 SPF~ 528 (609)
.=.+
T Consensus 154 t~LD 157 (325)
T cd01336 154 TRLD 157 (325)
T ss_pred ehHH
Confidence 4433
No 114
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=86.18 E-value=2.1 Score=46.70 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 568899999999999999999999875 76 789999986
No 115
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.17 E-value=4 Score=43.36 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-.|++.-++..|.+++.++++++|.+. .|.-+|.||.. .| ..+.+++++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~------------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK------------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-------------
Confidence 34567788899999999999999999999764 68888887754 24 346666542
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
..+|.+.++. +|++|...+.++.|++++|+
T Consensus 192 -----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 -----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368889987 99999999999999999996
No 116
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.01 E-value=2.3 Score=44.39 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=62.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhcc-C
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI-K 463 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v-k 463 (609)
+|-|+|.|..|..+|..+... | .++.+.|++ .+ ..+..++. ......++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999988653 5 356666763 11 12222111 112234666666543 5
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCCCCCCCHH
Q 007301 464 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAE 509 (609)
Q Consensus 464 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~aEct~e 509 (609)
||++|= +.+.+ ..++|++.++.. .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44445 889999988764 4568999999854 455544
No 117
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=85.56 E-value=2.7 Score=45.32 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999998764 86 799999997
No 118
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.56 E-value=4.5 Score=42.93 Aligned_cols=92 Identities=22% Similarity=0.377 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-+|++.=++..|.+++..+++|+|. |..|.-+|.+|... |. .+.++.++ .
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------t------ 192 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------T------ 192 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------C------
Confidence 45677788888999999999999999999 99999999999753 53 34444321 1
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
.+|.++++. .|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 193 -----------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 -----------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred -----------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268899987 99999999999999998855 555665554
No 119
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.46 E-value=0.89 Score=45.59 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|++.||+++|+|..|..||+.|+.. |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 457899999999999999999999764 76 789999986
No 120
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.43 E-value=2 Score=48.94 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=90.1
Q ss_pred eEEeecCCCc----cccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCceeeeecCCCCcHHHHHHHHcCCCee
Q 007301 279 PVTIDVGTNN----EKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLV 354 (609)
Q Consensus 279 PI~LDvGTnN----e~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~ 354 (609)
.|++-|..-. +.|..+-.|+|+-|+-.. .++++.+ .++ .-.+|-+|.+-. + +|- .+..+
T Consensus 66 diIlkV~~P~~~e~~~l~~g~tli~~l~p~~n----~~ll~~l----~~k--~it~ia~E~vpr-----i-sra-q~~d~ 128 (511)
T TIGR00561 66 DIILKVNAPSDAEIAELPAGKALVSFIWPAQN----PELMEKL----AAK--NITVLAMDAVPR-----I-SRA-QKLDA 128 (511)
T ss_pred CEEEEeCCCCHHHHHhcCCCCEEEEEcCccCC----HHHHHHH----HHc--CCEEEEeecccc-----c-ccC-CccCc
Confidence 3455444332 345566677777775331 2333333 222 234566665431 0 111 12222
Q ss_pred e--ecCCcchHHHHHHHHHHHHHHhC-----CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 355 F--NDDIQGTASVVLAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 355 F--NDDiQGTaaV~LAgll~Alr~~g-----~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
| +.-|.|-.+|..|+-.-.-...| ......|++++|+|.+|+..+..+.. .|. ++.++|.+
T Consensus 129 lssma~iAGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~ 196 (511)
T TIGR00561 129 LSSMANIAGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTR 196 (511)
T ss_pred chhhHHHHHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 2 23456666666554333222222 23456899999999999988776654 252 37777775
Q ss_pred CcccCCCccCCch------------hcchhccccCC------CCCHHHHHhccCCcEEEEccCCCC-----CCCHHHHHH
Q 007301 428 GLIVSSRLESLQH------------FKKPWAHEHEP------VKELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEA 484 (609)
Q Consensus 428 GLi~~~R~~~L~~------------~k~~fA~~~~~------~~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~ 484 (609)
.-.. .+...+.. ...-||+...+ ..-+.|.++. .|++|++.-++| +.|++.++.
T Consensus 197 ~~rl-e~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~ 273 (511)
T TIGR00561 197 PEVK-EQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDS 273 (511)
T ss_pred HHHH-HHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhh
Confidence 4211 00000100 00112221110 0114555655 999999983333 599999999
Q ss_pred HHc
Q 007301 485 MAS 487 (609)
Q Consensus 485 Ma~ 487 (609)
|..
T Consensus 274 MKp 276 (511)
T TIGR00561 274 MKA 276 (511)
T ss_pred CCC
Confidence 973
No 121
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=85.41 E-value=0.33 Score=46.40 Aligned_cols=89 Identities=22% Similarity=0.370 Sum_probs=50.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc-------------CcccCCCccCCchhcchhcc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-------------GLIVSSRLESLQHFKKPWAH 447 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~-------------GLi~~~R~~~L~~~k~~fA~ 447 (609)
+...+|||.|+|.+|.|.++++... |. ++...|.. ++.+ .+.+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5568999999999999999988663 53 34444442 0111 00000100 01322
Q ss_pred c----cCC--CCCHHHHHhccCCcEEEEcc-----CCCCCCCHHHHHHHH
Q 007301 448 E----HEP--VKELVDAVNAIKPTILIGTS-----GQGRTFTKEVVEAMA 486 (609)
Q Consensus 448 ~----~~~--~~~L~e~V~~vkPtvLIG~S-----~~~g~Ft~evv~~Ma 486 (609)
. .+. ...|.+.++. .|++|+.. ..+-+||++.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 111 1368888886 79999753 445699999999997
No 122
>PRK08291 ectoine utilization protein EutC; Validated
Probab=85.38 E-value=3.1 Score=44.15 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc
Q 007301 369 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 448 (609)
Q Consensus 369 gll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~ 448 (609)
|++++..... -..++++++|+|..|..++..+... .++ +++.++|+. .++ ...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4555555432 2347999999999988777766542 243 678888763 222 22332222211
Q ss_pred ----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCcEEEec-CCCCCCCCCCHHH
Q 007301 449 ----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (609)
Q Consensus 449 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~e~ 510 (609)
.....++.++++. .|++|-++.. .-+|..+.++. .--|.++ |+-..+-|+.++-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123678999986 8999876533 34677766652 2223333 4433456888765
No 123
>PRK07411 hypothetical protein; Validated
Probab=85.24 E-value=2.4 Score=46.33 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=62.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCc--------cCCchhcchhccc--
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL--------ESLQHFKKPWAHE-- 448 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~--------~~L~~~k~~fA~~-- 448 (609)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= |..+.- +++-..|..-|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D~-ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l 101 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFDV-VDSSNLQRQVIHGTSWVGKPKIESAKNRI 101 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE-ecccccCcCcccChHHCCCcHHHHHHHHH
Confidence 568899999999999999999999875 76 8999999862 222110 0111111111110
Q ss_pred ---cC---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007301 449 ---HE---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 449 ---~~---------~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 496 (609)
.+ .+ .+..+.++. .|++|-+.... =+..+|..++.....|.|++
T Consensus 102 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 102 LEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDNF--PTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 00 11 133455554 67777765422 25667777777777888754
No 124
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.23 E-value=2.8 Score=44.48 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-+|++.=|+..+.+++.++++++|.+. .|.-+|.||...-. ..| ..+..++++.
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t------------ 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT------------ 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc------------
Confidence 34667788899999999999999999999764 67777777753100 012 2455555431
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEec
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 497 (609)
.+|.+.++. +|++|+..+.++.+++++|+ +.-+|.-.
T Consensus 196 ------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk------~GavVIDV 232 (286)
T PRK14184 196 ------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK------PGAVVVDV 232 (286)
T ss_pred ------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEe
Confidence 358899997 99999999999999999995 45555433
No 125
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=84.88 E-value=2.1 Score=47.98 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
.||.|+|+|..|.+||..++.+ |. +++++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 3799999999999999999764 64 5777776
No 126
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.75 E-value=1 Score=44.68 Aligned_cols=76 Identities=16% Similarity=0.309 Sum_probs=52.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc---cC-CCCC
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HE-PVKE 454 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~-~~~~ 454 (609)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|... .|... .. ....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~rq--fl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGAQ--FLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCCC--ccccHHHcCchHHHH
Confidence 568899999999999999999999875 86 8999999973 2221 23321 22221 11 1235
Q ss_pred HHHHHhccCCcEEEEcc
Q 007301 455 LVDAVNAIKPTILIGTS 471 (609)
Q Consensus 455 L~e~V~~vkPtvLIG~S 471 (609)
+.+.++.+.|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 78889999999877543
No 127
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=84.60 E-value=5.8 Score=42.35 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=78.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc--CCCCCHHHHHhc
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 461 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e~V~~ 461 (609)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+.. ...+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 254 26799999876 122111244432 111101 011246788887
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCC-CCCCCHHHHhcccc--CcEEEecC
Q 007301 462 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAEEAYTWSQ--GRAIFASG 524 (609)
Q Consensus 462 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~aEct~e~A~~wT~--GraifASG 524 (609)
.|++|=+.+.+.. .=+++.+.+.+++...||+-.|||.. ++.+...-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 8988856555421 12467777888999999999999982 22224445555431 12377777
Q ss_pred CCCC
Q 007301 525 SPFD 528 (609)
Q Consensus 525 SPF~ 528 (609)
. .+
T Consensus 146 ~-LD 148 (312)
T TIGR01772 146 T-LD 148 (312)
T ss_pred c-ch
Confidence 5 44
No 128
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.58 E-value=1.6 Score=43.40 Aligned_cols=100 Identities=13% Similarity=0.255 Sum_probs=57.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (609)
++.||.|+|+|..|..+|..+... |.. -.++++++++. + .+.+...+++|- .....++.|+++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999998888642 310 11346655542 0 111222222221 1122467777764
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
.|++| ++..+. .-+++++.++.+-...+|+.++.-.
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC
Confidence 77766 444443 3488888887543345666666554
No 129
>PRK08374 homoserine dehydrogenase; Provisional
Probab=84.46 E-value=5.2 Score=42.92 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=63.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC---chhcchhcccc------C-
Q 007301 384 QRFLFLGAGEAGTGIAELIAL---EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL---QHFKKPWAHEH------E- 450 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~---~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L---~~~k~~fA~~~------~- 450 (609)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-+.|++|-+...++-++ ..+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999977 333334531 122445699988876553112 12222222100 0
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH-HHHccCCCcEEE
Q 007301 451 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIF 495 (609)
Q Consensus 451 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIF 495 (609)
..-++.|.++...+||+|-+++.. . ..++++ .+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~-a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-N-AHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-H-HHHHHHHHHh--hCCcEEE
Confidence 112788888878899999998633 3 334443 343 4677875
No 130
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.46 E-value=3.4 Score=44.90 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC-cccCCCccCCchhcchhccccCCCCCHHHH
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRLESLQHFKKPWAHEHEPVKELVDA 458 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G-Li~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 458 (609)
.+++.+++|+|+|.+|.++|+.++.. | .+++++|.+. .....+.+.|......+... ....+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEKEEDQLKEALEELGELGIELVLG----EYPEEF 65 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCchHHHHHHHHHHHhcCCEEEeC----CcchhH
Confidence 46788999999999999999888753 6 4789998853 00000000011101011110 001122
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCC
Q 007301 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGS 525 (609)
+. ++|++|-..+.. .-++++..+=. ..-||+ +..|+..++ ...+.|..|||
T Consensus 66 ~~--~~d~vv~~~g~~-~~~~~~~~a~~--~~i~~~-------~~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 66 LE--GVDLVVVSPGVP-LDSPPVVQAHK--KGIEVI-------GEVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hh--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHHHHhh----cCCCEEEEeCC
Confidence 33 489888766643 44565555422 345555 223332222 23678888997
No 131
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.37 E-value=5.2 Score=42.77 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=66.9
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc--cCCCccCCchhcchhccccCCCCCHHHHHh
Q 007301 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 384 ~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (609)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. .+...-+|.+...++.++..-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 254100011379999985322 111111244433233221111134567787
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCcEEEecCCCC
Q 007301 461 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPT 501 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt 501 (609)
. .|++|=+.+.+.. .| +++.+.+.+++ +.-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 7 8999866655321 23 45777788889 499999999997
No 132
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=84.34 E-value=2 Score=47.93 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=75.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCC-----CCCHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQ-TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKELV 456 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~-~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L~ 456 (609)
.||+|+||||+ -.-.|+..+.+. ..+ ....|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l----~~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDF----PLRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444555555432 233 247899999753 3322122222222221 112 24788
Q ss_pred HHHhccCCcEEEEcc--------------------------CCCCCC--------CHHHHHHHHccCCCcEEEecCCCCC
Q 007301 457 DAVNAIKPTILIGTS--------------------------GQGRTF--------TKEVVEAMASLNEKPIIFSLSNPTS 502 (609)
Q Consensus 457 e~V~~vkPtvLIG~S--------------------------~~~g~F--------t~evv~~Ma~~~erPIIFaLSNPt~ 502 (609)
||++. +|.+|=.- |.||.| -.++++.|.+.|...+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88887 77665222 333322 258888999999999999999998
Q ss_pred CCCCCHHHHhccccCcEEEecCCCCC
Q 007301 503 QSECTAEEAYTWSQGRAIFASGSPFD 528 (609)
Q Consensus 503 ~aEct~e~A~~wT~GraifASGSPF~ 528 (609)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322112344566555555554
No 133
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=84.31 E-value=4.7 Score=39.33 Aligned_cols=83 Identities=16% Similarity=0.333 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
--++-.|++.-++..+.+++..+++++|.+. .|.-+|.||... |. .+.+++++
T Consensus 16 ~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~-------------- 69 (160)
T PF02882_consen 16 VPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK-------------- 69 (160)
T ss_dssp --HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT--------------
T ss_pred cCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC--------------
Confidence 3567788899999999999999999999985 888888877652 42 35555553
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 ----------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ----------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ----------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ----------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1457788886 99999999999999999987
No 134
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.27 E-value=3.6 Score=41.52 Aligned_cols=121 Identities=12% Similarity=0.177 Sum_probs=68.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (609)
.||.|+|+|..|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999887653 42 124678887631 1122222111 01112466677754
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCcccc
Q 007301 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEY 532 (609)
Q Consensus 464 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~ 532 (609)
+|++| ++..+ ...+++++.+.... ..+|..++|-++ .++.-+|....+=++..-|..|..+
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~~ 123 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPALV 123 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHHH
Confidence 77666 44433 45778888887544 358888888763 3344445431222223456555544
No 135
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.26 E-value=3.6 Score=43.87 Aligned_cols=95 Identities=17% Similarity=0.316 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|.+|++.=++..+.+++.++++++|.+. .|.-+|.||...+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3456667888899999999999999999865 688888887643211 12 244444442
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEec
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 497 (609)
..+|.+.++. +|++|+..+.++.|++++|+ +.-+|.-.
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDV 234 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDV 234 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEe
Confidence 1358899987 99999999999999999995 55566544
No 136
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=83.71 E-value=4.8 Score=41.14 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=56.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch--h-cchhccccCCCCCHHHHHhc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH--F-KKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~--~-k~~fA~~~~~~~~L~e~V~~ 461 (609)
||.|+|+|+.|..+|..+... | .+++++++.--+..-+...+.- . ..... ......+..++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVRPKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEecHHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCC
Confidence 799999999999999888653 4 4577777611000000000100 0 00000 00112355555543
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 502 (609)
+|++|=+.-. ...+++++.++.. .+..+|+.+.|.-.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 6766533322 3479999988763 45667888999863
No 137
>PRK13243 glyoxylate reductase; Reviewed
Probab=83.64 E-value=9.9 Score=40.67 Aligned_cols=192 Identities=16% Similarity=0.136 Sum_probs=109.2
Q ss_pred cCCCeeeecCC---cchHHHHHHHHHHHHHH-------------------------hCCCCCCceEEEeCcchHHHHHHH
Q 007301 349 GTTHLVFNDDI---QGTASVVLAGLISAMKF-------------------------LGGSLADQRFLFLGAGEAGTGIAE 400 (609)
Q Consensus 349 r~~~~~FNDDi---QGTaaV~LAgll~Alr~-------------------------~g~~L~d~rivf~GAGsAg~GIA~ 400 (609)
+..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|..+|+
T Consensus 88 ~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~ 167 (333)
T PRK13243 88 RRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVAR 167 (333)
T ss_pred HcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHH
Confidence 34666666422 23444567777777664 235689999999999999999999
Q ss_pred HHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEcc----CCCCC
Q 007301 401 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRT 476 (609)
Q Consensus 401 li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~ 476 (609)
.+... |+ +++.+|+.. . . .. ...+ .-...+|.|+++. .|+++=.- ..-++
T Consensus 168 ~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~---~~~~~~l~ell~~--aDiV~l~lP~t~~T~~~ 221 (333)
T PRK13243 168 RAKGF-----GM-------RILYYSRTR----K--P-EA--EKEL---GAEYRPLEELLRE--SDFVSLHVPLTKETYHM 221 (333)
T ss_pred HHHHC-----CC-------EEEEECCCC----C--h-hh--HHHc---CCEecCHHHHHhh--CCEEEEeCCCChHHhhc
Confidence 88643 64 577888731 1 1 10 0011 1123479999987 89887442 12368
Q ss_pred CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHh-cc-ccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHH
Q 007301 477 FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLG 554 (609)
Q Consensus 477 Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~-~w-T~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG 554 (609)
|+++.+..|. +..++.=.|. .++--|+|+ ++ .+|+.-.|.=-=|++--..+..+ =+..|+.+-|=+|-.
T Consensus 222 i~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL--~~~~nvilTPHia~~ 292 (333)
T PRK13243 222 INEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEEL--FSLKNVVLAPHIGSA 292 (333)
T ss_pred cCHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchh--hcCCCEEECCcCCcC
Confidence 9999999996 6677776654 333333333 22 45655443211111100011111 234689999988743
Q ss_pred HHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 555 LIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 555 ~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
...+. ..|...+++-|..+..
T Consensus 293 t~e~~-----~~~~~~~~~ni~~~~~ 313 (333)
T PRK13243 293 TFEAR-----EGMAELVAENLIAFKR 313 (333)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHc
Confidence 33322 3344444555555443
No 138
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.62 E-value=5.2 Score=42.59 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc---CCCCCHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 458 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~ 458 (609)
.-.++.|+|+|.-|-.-++.+... .. -++|+++|+. .++ .+.+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655444331 12 3788988873 222 222322222211 224689999
Q ss_pred HhccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCcEEEecCCCC-CCCCCCHHH
Q 007301 459 VNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (609)
Q Consensus 459 V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~e~ 510 (609)
++. .|++|-++ +...+|..++++ +..-|-++.-.+ .+-|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 99998654 333578888775 666788887544 368999864
No 139
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.52 E-value=2.3 Score=44.35 Aligned_cols=118 Identities=20% Similarity=0.366 Sum_probs=70.3
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCcc----CCchhcchhcccc---CCCCCHHHH
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE----SLQHFKKPWAHEH---EPVKELVDA 458 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~----~L~~~k~~fA~~~---~~~~~L~e~ 458 (609)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.. .+.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999987764 355 2 79999985 22210 011110 010000 111344 45
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 007301 459 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--GraifA 522 (609)
++. .|++|=+.+.+.. .-+++++.|.+++...+|+-.|||. ......++++++ -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 665 8888844333321 2247888899999999999999998 333444555551 124777
Q ss_pred cCC
Q 007301 523 SGS 525 (609)
Q Consensus 523 SGS 525 (609)
+|.
T Consensus 139 lgt 141 (300)
T cd01339 139 MAG 141 (300)
T ss_pred ecc
Confidence 774
No 140
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=83.49 E-value=1.9 Score=44.38 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=56.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCC-CccCCch--hc-chhccccCCCCCHHHHHh
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQH--FK-KPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~-R~~~L~~--~k-~~fA~~~~~~~~L~e~V~ 460 (609)
||.|+|+|..|..+|..+... | ..++++|+..-.... +...... .. ...........++.|+++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 4 357777774211000 0000000 00 000000011246777776
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007301 461 AIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 502 (609)
. +|++| ++... ...+++++.+... .+..+|..++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 5 77776 33322 3578888877754 34568888887443
No 141
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=83.46 E-value=1.3 Score=45.32 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468889999999999999999999764 76 799999987
No 142
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.96 E-value=7.4 Score=41.24 Aligned_cols=83 Identities=20% Similarity=0.332 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-+|++.=++..+.+|+.++++++|-+. .|.-+|.||.. .|. .+.+++|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 4667888889999999999999999999764 68888888754 242 46666653
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.+++ +|++|-..|.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888887 99999999999999999998
No 143
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.87 E-value=3.6 Score=43.65 Aligned_cols=124 Identities=16% Similarity=0.299 Sum_probs=74.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc-ccCC--CCCHHHHHhc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEP--VKELVDAVNA 461 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~--~~~L~e~V~~ 461 (609)
||.|+|||..|.-+|-+|+. .|+ .+.+.|+|.+-=..++-.-+|.+.. .|.. ..-. ..+ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998774 265 3689999973111111111243322 2221 0001 134 466776
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEe
Q 007301 462 IKPTILIGTSGQG---RTFT--------------KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 522 (609)
Q Consensus 462 vkPtvLIG~S~~~---g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--GraifA 522 (609)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||. .+..--+++++. -+-+|.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv---Dv~t~~~~k~sg~p~~rviG 142 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL---DIAVYIAATEFDYPANKVIG 142 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH---HHHHHHHHHHhCcChhheec
Confidence 89888666653 3 23 57788888999999999999997 233333444331 133566
Q ss_pred cCCC
Q 007301 523 SGSP 526 (609)
Q Consensus 523 SGSP 526 (609)
+|.-
T Consensus 143 ~gt~ 146 (307)
T cd05290 143 TGTM 146 (307)
T ss_pred ccch
Confidence 6543
No 144
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.44 E-value=4.3 Score=43.24 Aligned_cols=92 Identities=14% Similarity=0.301 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeC-cchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~G-AGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-.|++.=|+..+.+++.++++|+| .|..|..+|.+|... |. .+++++++ .
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T------ 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------T------ 192 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------C------
Confidence 4566778888889999999999999999 999999999999753 53 46665432 1
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
.+|.|+++. .|++|-.-+.++.+++++++ +.-+|.=++
T Consensus 193 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~lk------~GavVIDvG 230 (296)
T PRK14188 193 -----------RDLPAVCRR--ADILVAAVGRPEMVKGDWIK------PGATVIDVG 230 (296)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhhcchheec------CCCEEEEcC
Confidence 147888886 99999888888878777643 444555444
No 145
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.43 E-value=7.7 Score=41.27 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhc
Q 007301 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 442 (609)
Q Consensus 364 aV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k 442 (609)
-+|-.|++.=++..+.+++.+++|++|.+. .|.-+|.||.. .| ..+.+++++
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 446677788888899999999999999764 67888887754 24 346666653
Q ss_pred chhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 443 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.+++ +|++|...|.++.++.|+|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788887 99999999999999999998
No 146
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.21 E-value=2.1 Score=44.84 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=25.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.||.|+|+|+.|.++|..+... | .++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 3799999999999999998764 5 346777763
No 147
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=81.86 E-value=8.5 Score=41.23 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=79.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc---cCCCccCCchhcchhccccCCCCCHHHHHh
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI---VSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi---~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (609)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. .-... +|.+...++........+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~-Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVM-ELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEe-ehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999887642 44100000158999974221 11111 243333233211111125567787
Q ss_pred ccCCcEEEEccCCCCC--C------------CHHHHHHHHcc-CCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEec
Q 007301 461 AIKPTILIGTSGQGRT--F------------TKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 523 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~--F------------t~evv~~Ma~~-~erPIIFaLSNPt~~aEct~e~A~~wT~G--raifAS 523 (609)
. .|++|=+.+.+.. - =+++.+.|+++ +..-||+-.|||. .+..--+++++.+ +-+|.|
T Consensus 75 ~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~ 149 (324)
T TIGR01758 75 D--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSA 149 (324)
T ss_pred C--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEE
Confidence 7 8888866665421 1 24677888888 4899999999997 3444445555532 227888
Q ss_pred CCCCCc
Q 007301 524 GSPFDP 529 (609)
Q Consensus 524 GSPF~p 529 (609)
|.=.+.
T Consensus 150 gt~LDs 155 (324)
T TIGR01758 150 LTRLDH 155 (324)
T ss_pred eeehHH
Confidence 865553
No 148
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=81.68 E-value=7.4 Score=41.74 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=72.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc---ccCCCccCCchhcchhccccCCCCCHHHHH
Q 007301 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL---IVSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (609)
Q Consensus 384 ~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL---i~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (609)
-||.|+|| |..|..+|-.|+. .|+-.-+-...+.|+|.+.- ..-...| |.+..-++-+...-..+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-l~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAME-LEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHH-HhhccccccCCcEEecChHHHh
Confidence 37999998 9999999987764 25410001127999998531 1111112 4333323322111113556778
Q ss_pred hccCCcEEEEccCCC---CC-----------CCHHHHHHHHccCC-CcEEEecCCCCCCCCCCHHHHhccc
Q 007301 460 NAIKPTILIGTSGQG---RT-----------FTKEVVEAMASLNE-KPIIFSLSNPTSQSECTAEEAYTWS 515 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt~~aEct~e~A~~wT 515 (609)
+. .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||- ....--+++++
T Consensus 78 ~d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 78 KD--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred CC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 77 89888665553 21 12457778888987 99999999997 33444445554
No 149
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=81.63 E-value=1.3 Score=43.78 Aligned_cols=74 Identities=19% Similarity=0.329 Sum_probs=48.8
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-----cCC-C
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-----HEP-V 452 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-----~~~-~ 452 (609)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=+ ..+ +|+.+ .|.+. ..+ .
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~v-e~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRLV-STE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCcC-Chh---cCccc--EecccchhhcCchHH
Confidence 468899999999999999999999875 86 79999998732 221 23321 12211 011 1
Q ss_pred CCHHHHHhccCCcEEEE
Q 007301 453 KELVDAVNAIKPTILIG 469 (609)
Q Consensus 453 ~~L~e~V~~vkPtvLIG 469 (609)
..+.+.++.+.|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24666677777877553
No 150
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=81.17 E-value=14 Score=39.30 Aligned_cols=179 Identities=12% Similarity=0.108 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEE
Q 007301 361 GTASVVLAGLISAMKFL----------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~----------------g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv 424 (609)
..|--+++-+|+..|.. +..+.++++.|+|-|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 44556666666665422 3468899999999999999999998753 65 56777
Q ss_pred cccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007301 425 DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNP 500 (609)
Q Consensus 425 Ds~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 500 (609)
|... .. .+... .+ ....+|.|+++. .|+++=+- ..-++|+++.++.|. +..++.=.+
T Consensus 166 ~~~~----~~---~~~~~-~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a-- 226 (312)
T PRK15469 166 SRSR----KS---WPGVQ-SF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA-- 226 (312)
T ss_pred eCCC----CC---CCCce-ee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC--
Confidence 7631 11 11111 11 123579999987 89887332 112678888888886 556766554
Q ss_pred CCCCCCCHHHHh--ccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcc
Q 007301 501 TSQSECTAEEAY--TWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQ 578 (609)
Q Consensus 501 t~~aEct~e~A~--~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~ 578 (609)
..++--|+|+ ....|+.-.|.--=|++--.... ..-=+..|+++-|=+|-. +. .+.|...+++-+-.+
T Consensus 227 --RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHiag~------t~-~~~~~~~~~~n~~~~ 296 (312)
T PRK15469 227 --RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVAAV------TR-PAEAVEYISRTIAQL 296 (312)
T ss_pred --CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCCCC------cC-HHHHHHHHHHHHHHH
Confidence 4666666665 23456655443222321111100 001245689999987732 21 234555555555555
Q ss_pred cC
Q 007301 579 VT 580 (609)
Q Consensus 579 v~ 580 (609)
..
T Consensus 297 ~~ 298 (312)
T PRK15469 297 EK 298 (312)
T ss_pred Hc
Confidence 43
No 151
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=81.17 E-value=18 Score=41.11 Aligned_cols=36 Identities=22% Similarity=0.063 Sum_probs=29.8
Q ss_pred CCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007301 538 VPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 573 (609)
Q Consensus 538 ~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~ 573 (609)
.||..+|-..+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999999998888877778887777765
No 152
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.14 E-value=8.9 Score=40.82 Aligned_cols=84 Identities=21% Similarity=0.393 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-+|++.=++..|.+++.++++++|.+. .|.-+|.||.. .| ..+.+++++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 35667788888889999999999999999764 67778777753 24 345666552
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.++. +|++|-..|.++.|+.++|+
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357888887 99999999999999999998
No 153
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=81.13 E-value=2 Score=43.99 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999875 76 799999987
No 154
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=81.01 E-value=17 Score=38.62 Aligned_cols=136 Identities=13% Similarity=0.172 Sum_probs=90.3
Q ss_pred cCCCeeeecCC---cchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHH
Q 007301 349 GTTHLVFNDDI---QGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAEL 401 (609)
Q Consensus 349 r~~~~~FNDDi---QGTaaV~LAgll~Alr~~------------------------g~~L~d~rivf~GAGsAg~GIA~l 401 (609)
+..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|..+|++
T Consensus 84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~ 163 (311)
T PRK08410 84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI 163 (311)
T ss_pred hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHH
Confidence 45666666422 345666777778776632 246899999999999999999998
Q ss_pred HHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCC
Q 007301 402 IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTF 477 (609)
Q Consensus 402 i~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~F 477 (609)
+.. | |+ +|+.+|+.+- . . .. .| ...+|.|+++. .|+++=. ....++|
T Consensus 164 ~~~-f----gm-------~V~~~d~~~~---~--~---~~--~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li 214 (311)
T PRK08410 164 AQA-F----GA-------KVVYYSTSGK---N--K---NE--EY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLI 214 (311)
T ss_pred Hhh-c----CC-------EEEEECCCcc---c--c---cc--Cc-----eeecHHHHhhc--CCEEEEeCCCCchhhccc
Confidence 853 2 64 6888888421 0 0 00 11 12479999987 8988733 2334799
Q ss_pred CHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcc--ccCcEE
Q 007301 478 TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAI 520 (609)
Q Consensus 478 t~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~w--T~Grai 520 (609)
+++.++.|. +..++.=.| ..++-=|+|+-. .+|+.-
T Consensus 215 ~~~~~~~Mk---~~a~lIN~a----RG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 215 AYKELKLLK---DGAILINVG----RGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred CHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHcCCeE
Confidence 999999997 667777554 466666655532 456654
No 155
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.95 E-value=9.6 Score=40.75 Aligned_cols=84 Identities=18% Similarity=0.230 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-.|++.-++..+.+++.++++++|.+. .|.-+|.||.. .| ..+.+++++ .
T Consensus 139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~-------T----- 194 (294)
T PRK14187 139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA-------T----- 194 (294)
T ss_pred ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC-------C-----
Confidence 34567788889999999999999999999764 67778777753 24 346666663 1
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 195 ------------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 195 ------------RDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788887 99999999999999999998
No 156
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=80.90 E-value=9.3 Score=40.94 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-+|++.=++..|.+|+.++++++|-+. .|.-+|.||.. .| ..+.+++|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 334567778888899999999999999999764 57777777754 24 357777663
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
.++|.+.+++ +|++|-..|.++.|+.|+|+ +.-+|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk------~gavVI 236 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK------PGAAVI 236 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEE
Confidence 1358888887 99999999999999999998 555554
No 157
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=80.90 E-value=4.1 Score=42.42 Aligned_cols=91 Identities=16% Similarity=0.258 Sum_probs=56.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCCCCCHHHHHhcc-
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI- 462 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~v- 462 (609)
||.|+|.|..|..+|..+... | .+++++|+.. .+ .+ .++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~----~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---VE----ALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998753 5 3577777741 11 11 12211 11235778888765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSN 499 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSN 499 (609)
+||++|=+- ......+++++.+.. ..+..||+-+|+
T Consensus 59 ~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st 95 (301)
T PRK09599 59 APRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGN 95 (301)
T ss_pred CCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCC
Confidence 377665332 233456777665543 346678888876
No 158
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.83 E-value=3.7 Score=42.16 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=38.0
Q ss_pred CCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 351 THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 351 ~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
+..-||-|-. |++.+++..+...+..+++|+|+|.+|..++..+.+ .| .+++++|+
T Consensus 93 ~l~g~NTD~~--------G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R 148 (270)
T TIGR00507 93 KLVGYNTDGI--------GLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANR 148 (270)
T ss_pred EEEEEcCCHH--------HHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeC
Confidence 3556666643 455566554555667899999999888777776653 24 36888876
No 159
>PRK06823 ornithine cyclodeaminase; Validated
Probab=80.64 E-value=8.1 Score=41.20 Aligned_cols=105 Identities=11% Similarity=0.187 Sum_probs=68.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc---cCCCCCHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 458 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~e~ 458 (609)
.-.++.++|+|.-+...++.++.. ..+ ++|+++|+. .++ .+.+...+.+. .....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 357999999999988887776653 233 788888873 222 22222222111 1123689999
Q ss_pred HhccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCcEEEecCCCC-CCCCCCHHHH
Q 007301 459 VNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 511 (609)
Q Consensus 459 V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~e~A 511 (609)
|+. .||++-++ +...+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 99998764 333578888886 555677776433 4789998754
No 160
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.51 E-value=9.9 Score=40.42 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-+|++.=++..+.+++.++++++|.+. .|.-+|.||.. .| ..+.+++++ .
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------C----
Confidence 445677888899999999999999999999764 67788887753 24 345556553 1
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
++|.+.++. +|++|-..|.++.|++++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 358888887 99999999999999999998
No 161
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.32 E-value=5.5 Score=40.56 Aligned_cols=100 Identities=15% Similarity=0.175 Sum_probs=54.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCC-CccCCchhcchhccccCCCCCHHHHHhccC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~-R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (609)
||.|+|+|+.|..+|..+... | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888653 4 468888874211000 0000100000000000112345443 3 4
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccC-CCcEEEecCCCC
Q 007301 464 PTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLSNPT 501 (609)
Q Consensus 464 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 501 (609)
+|++| ++... .-++++++.++..- +.-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78776 33332 34789999988643 344667788875
No 162
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.24 E-value=5.6 Score=41.76 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=62.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc---CCCCCH
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKEL 455 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L 455 (609)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=.-..+ |+. |..+-.+. ....-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~sN----lnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVTN----TNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEecccc----ccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999999875 76 789999987443322 331 11111110 011245
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCC
Q 007301 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 503 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 503 (609)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 5666666777655332 234455444433221223355566665533
No 163
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.17 E-value=6.1 Score=42.90 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=27.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+++.+++|+|+|..|.++|+.+.+ .| .++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G-------~~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LG-------ANVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 567899999999999998888765 36 368888864
No 164
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.01 E-value=5.5 Score=42.34 Aligned_cols=126 Identities=20% Similarity=0.288 Sum_probs=76.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc--CCCCCHHHHHhc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 461 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e~V~~ 461 (609)
.||.|+|||..|..+|-.|+. .|+ ...+.|+|.+-=...+-.-+|.+.. +|.... ....+.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 499999999999999887754 265 4789999974211111001133322 333211 11135544 666
Q ss_pred cCCcEEEEccCCCCC--CC------------HHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEecCC
Q 007301 462 IKPTILIGTSGQGRT--FT------------KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 525 (609)
Q Consensus 462 vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT--~GraifASGS 525 (609)
.|++|=+.+.+.. -| +++++.+.+++..-+|+-.|||.. ....-+++++ .-+-+|++|.
T Consensus 72 --adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 72 --SKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecCc
Confidence 8988755554311 23 367788889999999999999983 4455555553 1234777765
Q ss_pred C
Q 007301 526 P 526 (609)
Q Consensus 526 P 526 (609)
-
T Consensus 147 ~ 147 (312)
T cd05293 147 N 147 (312)
T ss_pred h
Confidence 3
No 165
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.83 E-value=3.5 Score=46.22 Aligned_cols=47 Identities=28% Similarity=0.398 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
.|++.+++..+.++++.+++|+|+|.+|.+++..+.. .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 3678888888889999999999999777777766654 352 5777775
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.81 E-value=2.9 Score=46.83 Aligned_cols=85 Identities=16% Similarity=0.186 Sum_probs=63.2
Q ss_pred eeeecCCCCcHHHHHHHHcC-CCe--eeecCCcchHHHHHHHHHHHHHHhCC--------CCCCceEEEeCcchHHHHHH
Q 007301 331 IQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFLGG--------SLADQRFLFLGAGEAGTGIA 399 (609)
Q Consensus 331 IqfEDf~~~nAf~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~g~--------~L~d~rivf~GAGsAg~GIA 399 (609)
|.+|=+....-.++.++|.- ..| ++||+....|....+-++.+++.... ...+..+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66776777777889999964 444 46887788888888899988875322 23456899999999999999
Q ss_pred HHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 400 ELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 400 ~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88864 374 56666654
No 167
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.80 E-value=8.2 Score=42.60 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=59.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc-cCCCccCCchhcchhccccCCCCCHHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI-VSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi-~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (609)
+..+||+|+|.|-.|.++|++|.. .|. .+.+.|.+--- .......|......+. .. ....+-+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~~~~~~~~~~l~~~gi~~~---~~-~~~~~~~ 75 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSEEELGEVSNELKELGVKLV---LG-ENYLDKL 75 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCCccchHHHHHHHhCCCEEE---eC-CCChHHh
Confidence 456799999999999999998865 363 57788864200 0000000111110111 01 1123434
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCC
Q 007301 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGS 525 (609)
+ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++.+.+.+.|-.|||
T Consensus 76 ~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT 125 (458)
T PRK01710 76 D--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS 125 (458)
T ss_pred c--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC
Confidence 3 478766444443 23455555543 346775 2222 3445445678889997
No 168
>PLN03139 formate dehydrogenase; Provisional
Probab=79.77 E-value=18 Score=39.85 Aligned_cols=143 Identities=17% Similarity=0.104 Sum_probs=86.0
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHH
Q 007301 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 457 (609)
Q Consensus 378 g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 457 (609)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ ..+..-+ ....+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~---~~~~~g~---~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE---LEKETGA---KFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh---hHhhcCc---eecCCHHH
Confidence 4568999999999999999999999653 64 4777887532 0 00 0010001 12257999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHh-cc-ccCcEEEecCCCCCccc
Q 007301 458 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPFE 531 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~-~w-T~GraifASGSPF~pv~ 531 (609)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++.-|+|+ ++ ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9987 888873321 13689999999996 5567775543 555555444 22 45666656554332211
Q ss_pred c-CCeecCCCCCcccccchhhhH
Q 007301 532 Y-GDNVFVPGQANNAYIFPGLGL 553 (609)
Q Consensus 532 ~-~G~~~~p~Q~NN~yiFPGlgl 553 (609)
. ... .--+..|..+-|=++-
T Consensus 323 lp~d~--pL~~~pNvilTPHiag 343 (386)
T PLN03139 323 APKDH--PWRYMPNHAMTPHISG 343 (386)
T ss_pred CCCCC--hhhcCCCeEEcccccc
Confidence 1 000 0013458888888763
No 169
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=79.68 E-value=6.7 Score=42.82 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~ 405 (609)
-...||.|+|||+-|+.+|..+...
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhc
Confidence 3457999999999999999999763
No 170
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=79.68 E-value=2.5 Score=38.89 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=43.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc--c-c-CCCCCHHHHHh
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--E-H-EPVKELVDAVN 460 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~--~-~-~~~~~L~e~V~ 460 (609)
||+++|+|..|.-+|+.|+.. |+ ++|.++|.+-+=.+ +|..+ .|.. + . +....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v~~~----nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTVELS----NLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCcCcc----hhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999775 76 79999998733211 23222 1221 1 1 11134667777
Q ss_pred ccCCcEEEEc
Q 007301 461 AIKPTILIGT 470 (609)
Q Consensus 461 ~vkPtvLIG~ 470 (609)
...|.+=|-.
T Consensus 64 ~~~p~v~i~~ 73 (143)
T cd01483 64 ELNPGVNVTA 73 (143)
T ss_pred HHCCCcEEEE
Confidence 7777665543
No 171
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.61 E-value=12 Score=40.19 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=71.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-+|++.=|+..|.+++.++++++|.+. .|.-+|.||.. .|+. ....+.++.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 344667788888889999999999999999764 67777777753 2220 01345555443
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEec
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL 497 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 497 (609)
.++|.+.+++ +|++|-..|.++.++.|+|+ +.-+|+=-
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDv 236 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDV 236 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEec
Confidence 1358888987 99999999999999999998 55566544
No 172
>PRK06436 glycerate dehydrogenase; Provisional
Probab=79.57 E-value=32 Score=36.58 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEE
Q 007301 361 GTASVVLAGLISAMKFL----------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 424 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~----------------g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lv 424 (609)
..|=-+++-+|+..|-. +..|.++++.|+|-|..|..+|+++. + .|+ +++.+
T Consensus 84 ~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~ 151 (303)
T PRK06436 84 SVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAY 151 (303)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEE
Confidence 34444566666655522 45799999999999999999998654 3 264 68888
Q ss_pred cccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCC
Q 007301 425 DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSN 499 (609)
Q Consensus 425 Ds~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 499 (609)
|+... .+.. + ....+|.|+++. .|+++=.- ..-++|+++.++.|. +..++.=.|.
T Consensus 152 ~r~~~-----~~~~---~-------~~~~~l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sR 210 (303)
T PRK06436 152 TRSYV-----NDGI---S-------SIYMEPEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVAR 210 (303)
T ss_pred CCCCc-----ccCc---c-------cccCCHHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCC
Confidence 87511 0101 0 012479998876 89887432 224689999999996 6778887776
No 173
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.55 E-value=2.4 Score=41.12 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=28.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999864 76 789999986
No 174
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.45 E-value=11 Score=40.21 Aligned_cols=85 Identities=18% Similarity=0.345 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-.|++.-++..|.+++.++++++|.+ ..|.-+|.||... ..| ..+.++.++
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 456778888899999999999999999976 4688888877531 013 235555552
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888987 99999999999999999998
No 175
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.21 E-value=14 Score=39.60 Aligned_cols=193 Identities=10% Similarity=0.113 Sum_probs=107.9
Q ss_pred cCCCeeeec-CC--cchHHHHHHHHHHHHHH-------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHH
Q 007301 349 GTTHLVFND-DI--QGTASVVLAGLISAMKF-------------------LGGSLADQRFLFLGAGEAGTGIAELIALEI 406 (609)
Q Consensus 349 r~~~~~FND-Di--QGTaaV~LAgll~Alr~-------------------~g~~L~d~rivf~GAGsAg~GIA~li~~~~ 406 (609)
+..+.+.|- +. +.+|=-+++-+|+.+|- .+..|.+.+|.|+|.|..|..+|+.+..
T Consensus 90 ~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~-- 167 (330)
T PRK12480 90 KHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAG-- 167 (330)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHh--
Confidence 445665553 22 23444567777777663 1346888999999999999999998864
Q ss_pred HHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEcc-CC---CCCCCHHHH
Q 007301 407 SKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS-GQ---GRTFTKEVV 482 (609)
Q Consensus 407 ~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S-~~---~g~Ft~evv 482 (609)
.|. +++.+|..- + ... .+.+ ...+|.|+++. .|+++=.- .. -+.|.++++
T Consensus 168 ---~G~-------~V~~~d~~~----~---~~~----~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l 221 (330)
T PRK12480 168 ---FGA-------TITAYDAYP----N---KDL----DFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMF 221 (330)
T ss_pred ---CCC-------EEEEEeCCh----h---Hhh----hhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHH
Confidence 263 588888641 1 010 1111 12478899886 88776332 21 156778888
Q ss_pred HHHHccCCCcEEEecCCCCCCCCCCHHHHhcc-ccCcEEEecCCCCC--ccc---------cCCeecCC-CCCcccccch
Q 007301 483 EAMASLNEKPIIFSLSNPTSQSECTAEEAYTW-SQGRAIFASGSPFD--PFE---------YGDNVFVP-GQANNAYIFP 549 (609)
Q Consensus 483 ~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~w-T~GraifASGSPF~--pv~---------~~G~~~~p-~Q~NN~yiFP 549 (609)
..|. +..++.-.|. -..+.-++.+++ .+|+.-.|.=-=|+ |.. .+...+.| =+..|+.+=|
T Consensus 222 ~~mk---~gavlIN~aR---G~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 222 DHVK---KGAILVNAAR---GAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred hcCC---CCcEEEEcCC---ccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 8885 5566665543 233333333333 34655444221121 110 01010001 2346888889
Q ss_pred hhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 550 GLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 550 GlglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
=+|-....+. ..|...+++.+-+++.
T Consensus 296 Hia~~t~~~~-----~~~~~~~~~n~~~~~~ 321 (330)
T PRK12480 296 HIAFFSDEAV-----QNLVEGGLNAALSVIN 321 (330)
T ss_pred cccccHHHHH-----HHHHHHHHHHHHHHHh
Confidence 8885554443 4566666666665553
No 176
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.12 E-value=8.8 Score=40.58 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=64.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc---cCCCCCHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 458 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~e~ 458 (609)
...+++|+|+|..|..++..+... .++ ++|+++|+. .++ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876553 233 678888773 222 22333333211 1123678899
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHH
Q 007301 459 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE 510 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~ 510 (609)
++. .|++|-+++.. .+|+.+.++. ..-|+.-=|.+..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~-----g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP-----GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC-----CCEEEeeCCCCcccccCCHHH
Confidence 976 99998766543 3466655531 123333335566778888754
No 177
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.11 E-value=8.4 Score=41.06 Aligned_cols=86 Identities=19% Similarity=0.312 Sum_probs=68.2
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC
Q 007301 360 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 438 (609)
Q Consensus 360 QGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L 438 (609)
.+-.-+|-+|++.=++..+.+++..+++++|.+. .|.-+|.||.. .|. .+.+++|+ .
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~-------T--- 193 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK-------T--- 193 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C---
Confidence 3446677888999999999999999999999764 68888887754 243 35556553 1
Q ss_pred chhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 439 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 439 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 194 --------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 --------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred --------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 358888887 99999999999999999998
No 178
>PRK05442 malate dehydrogenase; Provisional
Probab=78.92 E-value=12 Score=40.27 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=70.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc---ccCCCccCCchhcchhccccCCCCCHHHHHh
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL---IVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL---i~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (609)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.- ..-...| |.+...++-+...-..+..|.++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~D-l~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVME-LDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehh-hhhhhhhhcCCcEEecChHHHhC
Confidence 8999998 99999998877653 3310000127999998531 1111112 44433233222111135567787
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHccC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 007301 461 AIKPTILIGTSGQG---RT-----------FTKEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 515 (609)
Q Consensus 461 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt~~aEct~e~A~~wT 515 (609)
. .|++|=+.+.+ |- .=+++.+.+++++ ...||+-.|||- ....--+++++
T Consensus 80 d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 80 D--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 7 89888555542 31 1245667777866 699999999997 33333444444
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=78.84 E-value=3.3 Score=46.42 Aligned_cols=74 Identities=22% Similarity=0.169 Sum_probs=55.0
Q ss_pred eeeecCCCCcHHHHHHHHcC-CCe--eeecCCcchHHHHHHHHHHHHHHh--------CCCCCCceEEEeCcchHHHHHH
Q 007301 331 IQFEDFANHNAFDLLEKYGT-THL--VFNDDIQGTASVVLAGLISAMKFL--------GGSLADQRFLFLGAGEAGTGIA 399 (609)
Q Consensus 331 IqfEDf~~~nAf~lL~ryr~-~~~--~FNDDiQGTaaV~LAgll~Alr~~--------g~~L~d~rivf~GAGsAg~GIA 399 (609)
|..|=+....-.++.++|.- ..| .+||+..+.+....+-+++.++.. ...-.+.+++|+|||+||+..|
T Consensus 149 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAGl~AA 228 (515)
T TIGR03140 149 ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAA 228 (515)
T ss_pred ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHHHHHHH
Confidence 44555667777888899974 444 458888888888888888877654 1224457899999999999998
Q ss_pred HHHHH
Q 007301 400 ELIAL 404 (609)
Q Consensus 400 ~li~~ 404 (609)
..+..
T Consensus 229 ~~la~ 233 (515)
T TIGR03140 229 IYAAR 233 (515)
T ss_pred HHHHH
Confidence 87755
No 180
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=78.62 E-value=10 Score=43.54 Aligned_cols=146 Identities=21% Similarity=0.223 Sum_probs=94.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc--cCCCccCCchhcchhccccCCCCCHHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (609)
.+--++|+|.|..|+|||.-++. .|+ ++.||+++-+= |++|..+|=+--..|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 56679999999999999998875 487 58899988776 566666676766777743 2222234555
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccC--CCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeec
Q 007301 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 537 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~ 537 (609)
+. .+++..+|-|+ +-|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 43 47777777554 344555554310
Q ss_pred CCCCCcccccchhhhHHHHHhCC-ccc--CHHHHHHHHHHHHcccCcCCCCCCcccCCC--CChh
Q 007301 538 VPGQANNAYIFPGLGLGLIMSGA-IRV--HDDMLLAAAEALAGQVTQENFDKGLLYPPF--KNIR 597 (609)
Q Consensus 538 ~p~Q~NN~yiFPGlglG~l~s~a-~~I--td~M~laAA~aLA~~v~~e~~~~g~l~P~~--~~ir 597 (609)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++.+..+..||.- ++-|
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaR 165 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDAR 165 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHH
Confidence 0125778899999999993 333 222333356666666777666668889853 4444
No 181
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.33 E-value=13 Score=39.56 Aligned_cols=84 Identities=17% Similarity=0.284 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch
Q 007301 362 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 440 (609)
Q Consensus 362 TaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~ 440 (609)
-.-+|-.|++.=++..+.+++.++++++|.+. .|.-+|.||.. .|. .+.++.|+ .
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~-------T----- 190 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK-------T----- 190 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC-------C-----
Confidence 45667788888899999999999999999764 68888887754 242 45555442 1
Q ss_pred hcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 441 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 441 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.+|.+.++. +|++|-..|.++.|+.|+|+
T Consensus 191 ------------~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 191 ------------RNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 358888887 99999999999999999998
No 182
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=78.32 E-value=3.1 Score=39.08 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
+|||+|+|.||+..|..+.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999983 24 5788887643
No 183
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.98 E-value=2.5 Score=43.25 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=32.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999764 76 799999987
No 184
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.70 E-value=5.8 Score=42.55 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=62.4
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCC---C-----CCCCHHHHhccccCcEEEecCCCC
Q 007301 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS---Q-----SECTAEEAYTWSQGRAIFASGSPF 527 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~-----aEct~e~A~~wT~GraifASGSPF 527 (609)
.++-+..+|+++|..|+. ++-..++-+.+ ++-+|=|+.=.-||-. . .+-|.++++.+.. . |+..-=.
T Consensus 103 ~~l~~~~~~~aIlaSnTS-~l~~s~la~~~-~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lGk 177 (321)
T PRK07066 103 ERISRAAKPDAIIASSTS-GLLPTDFYARA-THPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALGM 177 (321)
T ss_pred HHHHHhCCCCeEEEECCC-ccCHHHHHHhc-CCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcCC
Confidence 345567789999988886 34333333333 3445558888889864 2 3346666666532 1 2222223
Q ss_pred CccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHH
Q 007301 528 DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAA 571 (609)
Q Consensus 528 ~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laA 571 (609)
.||.++ ...||-.=|-..+|-+-=++-+..--..|.+-+-+|
T Consensus 178 ~pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a 219 (321)
T PRK07066 178 RPLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDA 219 (321)
T ss_pred EeEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455442 256777777777777766655555444455545444
No 185
>PRK06487 glycerate dehydrogenase; Provisional
Probab=77.57 E-value=58 Score=34.72 Aligned_cols=188 Identities=16% Similarity=0.118 Sum_probs=111.6
Q ss_pred cCCCeeeecCC---cchHHHHHHHHHHHHHHh------------------------CCCCCCceEEEeCcchHHHHHHHH
Q 007301 349 GTTHLVFNDDI---QGTASVVLAGLISAMKFL------------------------GGSLADQRFLFLGAGEAGTGIAEL 401 (609)
Q Consensus 349 r~~~~~FNDDi---QGTaaV~LAgll~Alr~~------------------------g~~L~d~rivf~GAGsAg~GIA~l 401 (609)
+..+.+.|--- +.+|=-+++-+|+..|.. +..|.++++.|+|.|..|..||++
T Consensus 87 ~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~ 166 (317)
T PRK06487 87 ERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARL 166 (317)
T ss_pred HCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHH
Confidence 34666666422 345566777777765532 235889999999999999999998
Q ss_pred HHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCC
Q 007301 402 IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTF 477 (609)
Q Consensus 402 i~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~F 477 (609)
+... |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ....|.|
T Consensus 167 l~~f-----gm-------~V~~~~~~~-----~~~-------~-~----~~~~l~ell~~--sDiv~l~lPlt~~T~~li 215 (317)
T PRK06487 167 AEAF-----GM-------RVLIGQLPG-----RPA-------R-P----DRLPLDELLPQ--VDALTLHCPLTEHTRHLI 215 (317)
T ss_pred HhhC-----CC-------EEEEECCCC-----Ccc-------c-c----cccCHHHHHHh--CCEEEECCCCChHHhcCc
Confidence 8532 65 566677642 000 0 1 12379999987 8988832 2335799
Q ss_pred CHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEecCCCCC--ccccCCeecCCCCCcccccchhhhH
Q 007301 478 TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFD--PFEYGDNVFVPGQANNAYIFPGLGL 553 (609)
Q Consensus 478 t~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~--wT~GraifASGSPF~--pv~~~G~~~~p~Q~NN~yiFPGlgl 553 (609)
+++.+..|. +..++.=.|. .++--|+|+- ..+|+.-.|.=-=|. |.. .+..+.--+..|+.+-|=+|-
T Consensus 216 ~~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~ 287 (317)
T PRK06487 216 GARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAW 287 (317)
T ss_pred CHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCcccc
Confidence 999999997 6667775544 5555555542 245666544221121 111 111111003568999998873
Q ss_pred HHHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 554 GLIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 554 G~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
... .-.+.|...+++.|.....
T Consensus 288 ~t~-----e~~~~~~~~~~~ni~~~~~ 309 (317)
T PRK06487 288 GSR-----EARQRIVGQLAENARAFFA 309 (317)
T ss_pred CCH-----HHHHHHHHHHHHHHHHHHc
Confidence 222 2234555556666655543
No 186
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.55 E-value=7.2 Score=40.28 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 63 68888874
No 187
>PRK06932 glycerate dehydrogenase; Provisional
Probab=77.47 E-value=22 Score=37.83 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=84.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHH
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 458 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 458 (609)
..|.++++.|+|-|..|..+|+++.. -|+ +++.+|+.. .+.. . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-----fg~-------~V~~~~~~~------~~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-----LGM-------KVLYAEHKG------ASVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-----CCC-------EEEEECCCc------cccc---c-------cccCCHHHH
Confidence 36889999999999999999988743 265 466666531 0000 0 113479999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEecCCCCC--cc
Q 007301 459 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFD--PF 530 (609)
Q Consensus 459 V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~--wT~GraifASGSPF~--pv 530 (609)
++. .|+++=. ....|.|+++.+..|. +..++.=.|. .++--|+|+. ..+|+.-.|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 8998832 2334899999999996 6667775554 5555555542 235665444322221 11
Q ss_pred ccCCeecC-CCCCcccccchhhhH
Q 007301 531 EYGDNVFV-PGQANNAYIFPGLGL 553 (609)
Q Consensus 531 ~~~G~~~~-p~Q~NN~yiFPGlgl 553 (609)
..+.--.. --+..|+++-|=+|-
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCChhhHhhcCCCCEEECCcccc
Confidence 11110000 013578999998874
No 188
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=77.43 E-value=4.3 Score=37.17 Aligned_cols=93 Identities=17% Similarity=0.203 Sum_probs=48.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC--cccCCCccCCchhcchhccccCCCCCHHHHHhc
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG--LIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G--Li~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (609)
||+++|+ |-.|..|++.+.+. .|+ +=.+.+|++. ++-++ +.+.-.......+-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~d----~g~~~~~~~~~~~v~~~l~~~~~~ 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGKD----VGELAGIGPLGVPVTDDLEELLEE 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTSB----CHHHCTSST-SSBEBS-HHHHTTH
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccch----hhhhhCcCCcccccchhHHHhccc
Confidence 8999999 99999999988763 343 4466788875 11111 111100000000112567777776
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 496 (609)
+||+|=.|.+. -..+.++...++ ..|+|..
T Consensus 68 --~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 --ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp ---SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred --CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 88888777433 234444444443 4555553
No 189
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.39 E-value=5.6 Score=41.45 Aligned_cols=93 Identities=15% Similarity=0.206 Sum_probs=56.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCCCCCHHHHHhccC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAIK 463 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~vk 463 (609)
+|.|+|.|..|..+|..+... |. +++++|++ .++ .+. ++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~----~~~---~~~----~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVN----QEA---VDV----AGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC----HHH---HHH----HHHCCCeecCCHHHHHHhCC
Confidence 689999999999999988653 53 47777763 111 211 1111 122357888887643
Q ss_pred -CcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecCCCC
Q 007301 464 -PTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (609)
Q Consensus 464 -PtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 501 (609)
++++|= +.+.....+++++.+.. ..+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566653 22233356677766553 34567888887633
No 190
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.21 E-value=15 Score=39.31 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-+|++.=|+..+.+|+.+++|++|.+. .|.-+|.||.. .|.+. .-.+.++.++
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 4567778888889999999999999999764 67778777753 23210 0124444442
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
.++|.+.+++ +|++|-..|.++.++.|+|+ +.-+|+
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~gavVI 230 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK------EGAVVI 230 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEE
Confidence 1368888887 99999999999999999998 555554
No 191
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.11 E-value=45 Score=38.03 Aligned_cols=196 Identities=16% Similarity=0.155 Sum_probs=111.8
Q ss_pred cCCCeeeecCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 007301 349 GTTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEIS 407 (609)
Q Consensus 349 r~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~L~d~rivf~GAGsAg~GIA~li~~~~~ 407 (609)
+..+++.|-.- +.+|=-+++-+|+..|. .|..|.++++.|+|.|..|..+|+.+...
T Consensus 85 ~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f-- 162 (526)
T PRK13581 85 RRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF-- 162 (526)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 34566666421 23555567777777664 24568899999999999999999998643
Q ss_pred HhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHH
Q 007301 408 KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVE 483 (609)
Q Consensus 408 ~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~ 483 (609)
|+ +++.+|+.. ++ +..... .-...+|.|+++. .|+++=.- ...++|+++.+.
T Consensus 163 ---G~-------~V~~~d~~~----~~-~~~~~~-------g~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~ 218 (526)
T PRK13581 163 ---GM-------KVIAYDPYI----SP-ERAAQL-------GVELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELA 218 (526)
T ss_pred ---CC-------EEEEECCCC----Ch-hHHHhc-------CCEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHh
Confidence 64 688888741 11 000000 0111278999886 88876432 223789999999
Q ss_pred HHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCccc
Q 007301 484 AMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRV 563 (609)
Q Consensus 484 ~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~I 563 (609)
.|. +..++.=.|.-.---|.---+|+ ..|+.-.|.=-=|++--.....+ =+..|+.+-|=+|-...-+
T Consensus 219 ~mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~~pL--~~~~nvilTPHia~~t~e~----- 286 (526)
T PRK13581 219 KMK---PGVRIINCARGGIIDEAALAEAL--KSGKVAGAALDVFEKEPPTDSPL--FELPNVVVTPHLGASTAEA----- 286 (526)
T ss_pred cCC---CCeEEEECCCCceeCHHHHHHHH--hcCCeeEEEEecCCCCCCCCchh--hcCCCeeEcCccccchHHH-----
Confidence 996 66777766653322222222333 35665433211111000001111 1346899999887543322
Q ss_pred CHHHHHHHHHHHHcccCcC
Q 007301 564 HDDMLLAAAEALAGQVTQE 582 (609)
Q Consensus 564 td~M~laAA~aLA~~v~~e 582 (609)
...|...+++.+......+
T Consensus 287 ~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 287 QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 2455666666666665543
No 192
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=77.05 E-value=2.3 Score=49.76 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=34.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999876 76 89999998633
No 193
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=77.04 E-value=3 Score=45.33 Aligned_cols=109 Identities=21% Similarity=0.358 Sum_probs=73.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc----cCCCCCHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELV 456 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 456 (609)
...-+++++|.|-+|+--|++.+ |+. .++.++|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999888765 332 467777763 233 44444445533 12234799
Q ss_pred HHHhccCCcEEEEc-----cCCCCCCCHHHHHHHHccC-------CCcEEEecCCCCCCCCCCHHH
Q 007301 457 DAVNAIKPTILIGT-----SGQGRTFTKEVVEAMASLN-------EKPIIFSLSNPTSQSECTAEE 510 (609)
Q Consensus 457 e~V~~vkPtvLIG~-----S~~~g~Ft~evv~~Ma~~~-------erPIIFaLSNPt~~aEct~e~ 510 (609)
|+|++ .|.+||. +..|.+.|+|+++.|.... +.==+|-=|.||+..+-|.|+
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9998887 4556789999999997311 122235566788777777654
No 194
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.03 E-value=83 Score=34.87 Aligned_cols=211 Identities=17% Similarity=0.198 Sum_probs=123.2
Q ss_pred eeeecCCCCcHHHHHHHHcCCCeeeecCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEe
Q 007301 331 IQFEDFANHNAFDLLEKYGTTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFL 389 (609)
Q Consensus 331 IqfEDf~~~nAf~lL~ryr~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~L~d~rivf~ 389 (609)
|+.-=.+..| .++-.--+..++++|--- +.+|=-+++.+|+..|- .|..|.+.++.|+
T Consensus 79 I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIi 157 (409)
T PRK11790 79 IGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIV 157 (409)
T ss_pred EEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEE
Confidence 4443333333 444444456899999532 33555678888887763 2456899999999
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEE
Q 007301 390 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG 469 (609)
Q Consensus 390 GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 469 (609)
|-|..|..+|+.+... |+ +++.+|... + .... .+ ....+|.|+++. .|+++=
T Consensus 158 G~G~IG~~vA~~~~~f-----Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVsl 209 (409)
T PRK11790 158 GYGHIGTQLSVLAESL-----GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSL 209 (409)
T ss_pred CCCHHHHHHHHHHHHC-----CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEE
Confidence 9999999999988642 65 677788631 0 0010 01 123579999987 888773
Q ss_pred cc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhc--cccCcEEEecCC-CC--CccccCCeecC-C
Q 007301 470 TS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGS-PF--DPFEYGDNVFV-P 539 (609)
Q Consensus 470 ~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~--wT~GraifASGS-PF--~pv~~~G~~~~-p 539 (609)
.- ...++|+++.+..|. +.-++.-.|. .++--|+|+. ...|+ |.+-|. =| +|..-+..... -
T Consensus 210 h~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL 281 (409)
T PRK11790 210 HVPETPSTKNMIGAEELALMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPL 281 (409)
T ss_pred cCCCChHHhhccCHHHHhcCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchh
Confidence 31 123699999999996 5567775554 5555555442 23566 332221 11 12111100001 1
Q ss_pred CCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcCC
Q 007301 540 GQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQEN 583 (609)
Q Consensus 540 ~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~~e~ 583 (609)
-+..|+++-|=+|-...-+ ...|...+++.+......+.
T Consensus 282 ~~~~nvilTPHia~~t~ea-----~~~~~~~~~~nl~~~~~~~~ 320 (409)
T PRK11790 282 RGLDNVILTPHIGGSTQEA-----QENIGLEVAGKLVKYSDNGS 320 (409)
T ss_pred hcCCCEEECCcCCCCHHHH-----HHHHHHHHHHHHHHHHcCCC
Confidence 2346899999888543322 24556666677666654433
No 195
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=76.92 E-value=23 Score=37.89 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=106.0
Q ss_pred CCCeeeecCC---cchHHHHHHHHHHHHHH---------------------hCCCCCCceEEEeCcchHHHHHHHHHHHH
Q 007301 350 TTHLVFNDDI---QGTASVVLAGLISAMKF---------------------LGGSLADQRFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 350 ~~~~~FNDDi---QGTaaV~LAgll~Alr~---------------------~g~~L~d~rivf~GAGsAg~GIA~li~~~ 405 (609)
..+++.|--- ..+|=-+++.+|+..|. .|..|.++++.|+|.|..|..||+.+..+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 4555555322 23555567777776663 14568999999999999999999987523
Q ss_pred HHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEc----cCCCCCCCHHH
Q 007301 406 ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT----SGQGRTFTKEV 481 (609)
Q Consensus 406 ~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~ev 481 (609)
+ |+ ++...|+.. . + .....+ .....+|.|+++. .|+++=. ....|+|+++.
T Consensus 168 f----gm-------~V~~~~~~~----~--~---~~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 168 F----NM-------PILYNARRH----H--K---EAEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred C----CC-------EEEEECCCC----c--h---hhHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHH
Confidence 2 64 455556421 0 0 000011 1123479999987 8987632 12237999999
Q ss_pred HHHHHccCCCcEEEecCCCCCCCCCCHHHHh-cc-ccCcEEEecCCCCCcccc-CCeecCCCCCcccccchhhhHHHHHh
Q 007301 482 VEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPFEY-GDNVFVPGQANNAYIFPGLGLGLIMS 558 (609)
Q Consensus 482 v~~Ma~~~erPIIFaLSNPt~~aEct~e~A~-~w-T~GraifASGSPF~pv~~-~G~~~~p~Q~NN~yiFPGlglG~l~s 558 (609)
++.|. +.-++.=.| ..++--|+|+ ++ .+|+.-.|.=-=|++--. .... -=...|+.+-|=+|-...-+
T Consensus 223 l~~mk---~ga~lIN~a----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~p--L~~~~nvilTPHia~~t~e~ 293 (323)
T PRK15409 223 FAKMK---SSAIFINAG----RGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSP--LLSLPNVVAVPHIGSATHET 293 (323)
T ss_pred HhcCC---CCeEEEECC----CccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCch--hhcCCCEEEcCcCCCCcHHH
Confidence 99996 566666544 3555555544 22 456654442111111100 0000 11345888888877433222
Q ss_pred CCcccCHHHHHHHHHHHHccc
Q 007301 559 GAIRVHDDMLLAAAEALAGQV 579 (609)
Q Consensus 559 ~a~~Itd~M~laAA~aLA~~v 579 (609)
-..|...+++.+....
T Consensus 294 -----~~~~~~~~~~ni~~~~ 309 (323)
T PRK15409 294 -----RYNMAACAVDNLIDAL 309 (323)
T ss_pred -----HHHHHHHHHHHHHHHH
Confidence 2344444555555544
No 196
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=76.74 E-value=14 Score=39.07 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc----cCCCCCHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 457 (609)
.-+++.++|+|.-|..-++.++.. ..+ ++|.+.|+. .+ +.+.+.+.+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999988777666653 243 788888773 22 233343333322 122468999
Q ss_pred HHhccCCcEEEEccC-CCCCCCHHHHHHHHccCCCcEEEec-CCCCCCCCCCHHHH
Q 007301 458 AVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 511 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~e~A 511 (609)
+|+. .||++-+++ ...+|..++++ +.--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~------pg~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLG------DEYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcC------CCceEEecCCCCCCcccCCHHHH
Confidence 9987 999997643 23478888886 23345554 34335799998743
No 197
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=76.71 E-value=9.8 Score=38.11 Aligned_cols=91 Identities=18% Similarity=0.285 Sum_probs=51.0
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhh-hcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~ee-Ar~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (609)
..++||.|+|.|..+. +|.-++..|.+ ++..+- +..-+.+.|..-+++.-- +-..+-.-|++. |. +.
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~-~~ 106 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VR-AL 106 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HH-Hc
Confidence 4578999999998874 77777776643 110000 112222333322332211 112333445542 32 22
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHH
Q 007301 460 NAIKPTILIGTSGQGRTFTKEVVEAMA 486 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma 486 (609)
.-+-|++|+.|..|. |+++++.+.
T Consensus 107 -~~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 107 -GHAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred -CCCCCEEEEEeCCCC--CHHHHHHHH
Confidence 235799999999887 899999874
No 198
>PLN02527 aspartate carbamoyltransferase
Probab=76.46 E-value=73 Score=34.07 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=79.5
Q ss_pred HHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeee--cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHH
Q 007301 322 KQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIA 399 (609)
Q Consensus 322 ~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA 399 (609)
-.+| .++++ .-.+.... .+-+.+| .++||.| |+...-=.=+||=++.-.+..| ++++.||+|+|.+.=+ -++
T Consensus 93 ls~y-~D~iv-iR~~~~~~-~~~~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~-rv~ 166 (306)
T PLN02527 93 VEGY-SDIIV-LRHFESGA-ARRAAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANG-RTV 166 (306)
T ss_pred HHHh-CcEEE-EECCChhH-HHHHHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCC-hhH
Confidence 3456 44333 44444443 3334555 3689999 4455566667888777766665 5999999999987422 245
Q ss_pred HHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCC---CCCHHHHHhccCCcEEEEccCC
Q 007301 400 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP---VKELVDAVNAIKPTILIGTSGQ 473 (609)
Q Consensus 400 ~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~---~~~L~e~V~~vkPtvLIG~S~~ 473 (609)
+-++.++.+..|+ .|.++-.+|+- +++....++++ ... ..++.|+|+. .||+.-.+.+
T Consensus 167 ~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 167 RSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred HHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEEECCcc
Confidence 5555554442253 58888887762 12222223332 111 2689999998 9999987654
No 199
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.25 E-value=16 Score=38.90 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|..|++.=++..+.+++.++++++|-+. .|.-+|.||.. .| ..+.+++++
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 4567788888899999999999999999764 67777777753 24 245555442
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.++. +|++|-..|.++.+++|+|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999998
No 200
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=76.20 E-value=13 Score=39.40 Aligned_cols=120 Identities=22% Similarity=0.342 Sum_probs=72.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc-----c-cCCC---CC
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-----E-HEPV---KE 454 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-----~-~~~~---~~ 454 (609)
||.|+|| |..|..+|..++. .|+ ...++++|.+--+ +.+..++.++.+ . ...+ .+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 9999999988765 364 2479999984211 112222212111 0 0111 24
Q ss_pred HHHHHhccCCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--Cc
Q 007301 455 LVDAVNAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GR 518 (609)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--Gr 518 (609)
.+.++. .|+.|=+.+.+ | .+-+++++.|.+++...+|+--+||. .+..-.+++++. .+
T Consensus 67 -~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv---d~~t~~~~~~~g~~~~ 140 (309)
T cd05294 67 -LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV---DVMTYKALKESGFDKN 140 (309)
T ss_pred -HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch---HHHHHHHHHhcCCCHH
Confidence 355776 88888665543 1 24567788888899999999999997 222233443331 23
Q ss_pred EEEecCC
Q 007301 519 AIFASGS 525 (609)
Q Consensus 519 aifASGS 525 (609)
-+|++|.
T Consensus 141 ~viG~gt 147 (309)
T cd05294 141 RVFGLGT 147 (309)
T ss_pred HEeeccc
Confidence 3677764
No 201
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.05 E-value=7 Score=43.48 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=28.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+...||+|+|+|-+|.++|+.+.. .|. .+.+.|++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~ 47 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN 47 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC
Confidence 3566799999999999999999864 363 57888864
No 202
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=75.76 E-value=1.3 Score=50.05 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHH
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~ 404 (609)
+...+.||||+|||.||++.|..+++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 203
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=75.73 E-value=9.5 Score=43.23 Aligned_cols=103 Identities=17% Similarity=0.110 Sum_probs=55.0
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCC---CCCC-----CHHHHhccccCcEEE-ecCCCCCccc
Q 007301 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS---QSEC-----TAEEAYTWSQGRAIF-ASGSPFDPFE 531 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~---~aEc-----t~e~A~~wT~Graif-ASGSPF~pv~ 531 (609)
..+|+++|...+. .++.+-+..-.++-+|=+-+-.-||.. ..|+ |.++++++.. .++ .-|. .||.
T Consensus 111 ~~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lgk--~pv~ 184 (507)
T PRK08268 111 IVSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWGK--TPVR 184 (507)
T ss_pred hCCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcCC--ceEE
Confidence 3478888874332 234443333333334446777777653 2222 3445444321 011 1111 1222
Q ss_pred cCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007301 532 YGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 572 (609)
Q Consensus 532 ~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA 572 (609)
++ ..||-.+|-.++|.+.=+..+...--++.+-+..+.
T Consensus 185 v~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 185 AK---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ec---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 21 346789999999999888888776666666666554
No 204
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=75.58 E-value=15 Score=39.97 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCc
Q 007301 361 GTASVVLAGLISAMKFL--------------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~--------------------g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 420 (609)
-||-.+++-+|.++|-. |..+.++|+.|+|+|+.|.-||+.|..+ | .+
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57778888888888743 3468899999999999999999998763 2 12
Q ss_pred EEEEcccCcccCCCcc-CCchhcchhccccCCCCCHHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCcEEE
Q 007301 421 IWLVDSKGLIVSSRLE-SLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 421 i~lvDs~GLi~~~R~~-~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
|. +.+|.. .....+..|++ .-++.|...+ .|+|+=..- ..++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 32 333421 12233334443 3467777765 888874431 22689999999997 566666
Q ss_pred ecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCC-eecC-CCCCcccccchhhhHHHHHhC
Q 007301 496 SLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFV-PGQANNAYIFPGLGLGLIMSG 559 (609)
Q Consensus 496 aLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G-~~~~-p~Q~NN~yiFPGlglG~l~s~ 559 (609)
-.+. -+=|..++.++.-+---|+..| -+|.-+. .+.+ -.-.-|+-+-|=||-..+-++
T Consensus 251 N~aR---G~iide~~l~eaL~sG~i~~aG---lDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~ 310 (336)
T KOG0069|consen 251 NTAR---GAIIDEEALVEALKSGKIAGAG---LDVFEPEPPVDHPLLTLDNVVILPHIGSATLETR 310 (336)
T ss_pred eccc---cccccHHHHHHHHhcCCccccc---ccccCCCCCCCcchhcccceeEecccccCcHHHH
Confidence 5554 2334555444432222344444 1222211 1111 123457888898887777665
No 205
>PRK07680 late competence protein ComER; Validated
Probab=75.56 E-value=5.8 Score=40.59 Aligned_cols=98 Identities=13% Similarity=0.254 Sum_probs=54.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 464 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 464 (609)
+|.|+|+|..|..+|..+... |.- ....++++|++ .. +.......|. ......+..|+++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999888653 420 12467777763 11 1111111110 00112456666654 6
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007301 465 TILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (609)
Q Consensus 465 tvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 502 (609)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 6665 22223 3356777776543 34557777777653
No 206
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.41 E-value=17 Score=38.76 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=66.8
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-.|++.=++..|.+|++.+++++|.+. .|.-+|.||.. .|. .+.+++++ .
T Consensus 136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~-------T---- 192 (282)
T PRK14180 136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF-------T---- 192 (282)
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC-------C----
Confidence 345678888899999999999999999999764 68888887753 242 45555542 1
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
++|.+.++. +|++|-..|.++.|++++|+
T Consensus 193 -------------~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 193 -------------TDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 357777876 99999999999999999997
No 207
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=75.37 E-value=1.3 Score=54.13 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCCceeeeecCCCCcHH------------HHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCC
Q 007301 314 LHEFMTAVKQNYGERILIQFEDFANHNAF------------DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSL 381 (609)
Q Consensus 314 idEfv~Av~~~fGp~~lIqfEDf~~~nAf------------~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L 381 (609)
-.|.++++..+|-| +-||.-|..-.+. ..-+||...+.+|..+ .-.+|
T Consensus 358 aQEViKaisgKf~P--i~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~------------------~Q~kL 417 (1008)
T TIGR01408 358 SQEVLKAVTGKFSP--LCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDT------------------FQQKL 417 (1008)
T ss_pred HHHHHHHhcCCCCC--ceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHH------------------HHHHH
Confidence 58899999999977 2245444322222 1223443333333311 11467
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+.||+++|||..|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 418 ~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 418 QNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred hhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 889999999999999999999876 65111 13689999986
No 208
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=75.25 E-value=9.1 Score=39.99 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch-hcchhcc-ccCCCCCHHH
Q 007301 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAH-EHEPVKELVD 457 (609)
Q Consensus 381 L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~-~k~~fA~-~~~~~~~L~e 457 (609)
++..+|+|.|| |-.|..+++.+++ .| .+++.+|++---.....+.+.. .+..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 7778777777765 25 3577777652100000000100 0011111 2222346778
Q ss_pred HHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccC-CCcEEEecC
Q 007301 458 AVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLN-EKPIIFSLS 498 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~-erPIIFaLS 498 (609)
+++..+||++|=+.+.... .+..+++++...+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999988764311 1345667776554 457888654
No 209
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.10 E-value=1.6 Score=49.37 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=27.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 420 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~ 420 (609)
.+.-+|+|+|||-||+..|++|..... .+..-|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 345689999999999999999988621 1344455554
No 210
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.01 E-value=7.4 Score=37.73 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++++.+++|.|| |..|..+++.++ + .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467789999998 444544555443 3 363 58888875
No 211
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.98 E-value=18 Score=36.59 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 368 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 368 Agll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
+..+.|++..+. ..+.+++|+|+|..|.-.+.+. ++ .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 333556655544 3788999999987765544433 22 464 56887765
No 212
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=74.89 E-value=28 Score=36.26 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=28.2
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 371 l~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
+.|++..+. ..+++++|.|+|+.|...+.+. .+ .|. ++++.+|.
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqla-k~----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAV-KT----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------cEEEEEeC
Confidence 555554443 3688999999997776555433 22 364 57887776
No 213
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.41 E-value=10 Score=40.06 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=73.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccC-CCCCHHHHHhccC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAIK 463 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~-~~~~L~e~V~~vk 463 (609)
||.|+|+|..|..+|-.++. .|+ ...++++|.+-=......-++.+. .+|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999887765 264 368999997410000000012211 12211100 01344 55665
Q ss_pred CcEEEEccCCCCCC--------------CHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEecCCCC
Q 007301 464 PTILIGTSGQGRTF--------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSPF 527 (609)
Q Consensus 464 PtvLIG~S~~~g~F--------------t~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--GraifASGSPF 527 (609)
.|+.|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.++ -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 77777554443211 146778888899999999999996 555555555541 23377777554
No 214
>PRK06153 hypothetical protein; Provisional
Probab=74.29 E-value=4 Score=45.20 Aligned_cols=95 Identities=18% Similarity=0.287 Sum_probs=58.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc-----CCCC
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-----EPVK 453 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~-----~~~~ 453 (609)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.|+|.+=+ ..+ +|+..--.|-.+. ....
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~S---NLnRQ~gaf~~~DvGk~~~KVe 236 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQH---NAFRSPGAASIEELREAPKKVD 236 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-ccc---ccccccccCCHhHcCCcchHHH
Confidence 578899999999999999999999875 76 79999998722 211 2322210111110 1112
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 454 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
-+.+.++...|.+ ......++++-+..+. +-.+||
T Consensus 237 vaa~rl~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~ 271 (393)
T PRK06153 237 YFKSRYSNMRRGI----VPHPEYIDEDNVDELD---GFTFVF 271 (393)
T ss_pred HHHHHHHHhCCeE----EEEeecCCHHHHHHhc---CCCEEE
Confidence 4666666666654 2334456877776553 445665
No 215
>PRK07340 ornithine cyclodeaminase; Validated
Probab=73.93 E-value=23 Score=37.48 Aligned_cols=105 Identities=9% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCC--CCCHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELVDA 458 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L~e~ 458 (609)
....+++++|+|..|...++.+... .++ ++|+++|+. .++ ...+...+.+...+ ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888877653 243 578888874 222 22222222211111 3578899
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEecCCC-CCCCCCCHHHH
Q 007301 459 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNP-TSQSECTAEEA 511 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNP-t~~aEct~e~A 511 (609)
++. .|++|-++... .+|..+ ++ +.--|-++.-. ..+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~~-~~------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPEA-AR------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCcc-CC------CCCEEEecCCCCCCcccCCHHHH
Confidence 985 99999876443 356542 32 45566666542 24789987643
No 216
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.86 E-value=19 Score=38.38 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcc-hHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAG-sAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-.|++.=++..|.+++..+++++|.+ ..|.-+|.||.. .| ..+.++.|+ .
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~-------T------ 189 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK-------T------ 189 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-------C------
Confidence 456778888889999999999999999975 468888888754 24 245555542 1
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
++|.+.+++ +|++|-..|.++.+++|+|+
T Consensus 190 -----------~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 190 -----------QDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 358888887 99999999999999999997
No 217
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=73.76 E-value=15 Score=38.66 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G-~s~eeAr~~i~lvDs~ 427 (609)
.||.|+|+|..|..|+.-|... | ++ ..+|++.|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 5899999999998888877764 5 32 3678877763
No 218
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.67 E-value=23 Score=37.82 Aligned_cols=96 Identities=21% Similarity=0.361 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 439 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~ 439 (609)
+-.-+|-.|++.=|+..|.+|+.++++++|-+. .|.-+|.||.. .|... ...+.++.++
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 345667788888899999999999999999764 67778777754 23210 1234444432
Q ss_pred hhcchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007301 440 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 440 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 496 (609)
.++|.+.++. +|++|-..|.++.+++|+|+ +.-||+=
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik------~GavVID 227 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA------EKAVIVD 227 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 1358888887 99999999999999999998 5556643
No 219
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=73.30 E-value=18 Score=39.89 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhc
Q 007301 364 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 442 (609)
Q Consensus 364 aV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k 442 (609)
-+|-+|++.-|+..+.+++.+++|++|-+. .|.-+|.||.. .| ..+.++.++
T Consensus 212 PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~--------------- 264 (364)
T PLN02616 212 PCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR--------------- 264 (364)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC---------------
Confidence 456677888889999999999999999764 57777777754 24 245666542
Q ss_pred chhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 443 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 443 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 265 ---------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ---------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ---------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1468888887 99999999999999999998
No 220
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=72.96 E-value=6 Score=41.90 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=56.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc---ccCCCCCHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAV 459 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V 459 (609)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. ..+ ...+...+.+ +.....+++|+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36999999999988877776654 344 789988873 222 2233333332 112246899999
Q ss_pred hccCCcEEEEccCCCC---CCCHHHHHHHHccCCCcEEEecCCCC-CCCCCCHHH
Q 007301 460 NAIKPTILIGTSGQGR---TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 510 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~g---~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~e~ 510 (609)
+. .|+++-++.... +|..++++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 999998764443 68888887 455677776422 346887753
No 221
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=72.96 E-value=18 Score=44.89 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=53.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhc------------Cc---EEE--EcccCccc-CCCccCCchhcc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR------------KK---IWL--VDSKGLIV-SSRLESLQHFKK 443 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr------------~~---i~l--vDs~GLi~-~~R~~~L~~~k~ 443 (609)
.--+|||.|+|-.|.|.++.+...-.+ -++.++-+ ++ +|. +.+.-.+. ++.. .--..+.
T Consensus 202 ~P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~-~~f~~~~ 278 (1042)
T PLN02819 202 CPLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPS-KQFDKAD 278 (1042)
T ss_pred CCeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCc-cccchhh
Confidence 358999999999999999988654111 02222211 11 220 11111111 1100 0001122
Q ss_pred hhccccCCC-CCHH-HHHhccCCcEEEEcc----CCCCCCCHH-HHHHHHc
Q 007301 444 PWAHEHEPV-KELV-DAVNAIKPTILIGTS----GQGRTFTKE-VVEAMAS 487 (609)
Q Consensus 444 ~fA~~~~~~-~~L~-e~V~~vkPtvLIG~S----~~~g~Ft~e-vv~~Ma~ 487 (609)
.|+++ +.. ..+. +++.. .|+|||.= ..|.++|++ +++.|..
T Consensus 279 y~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 279 YYAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred hccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 33333 233 3454 68877 99999984 345689999 8888874
No 222
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=72.79 E-value=8.3 Score=40.32 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=56.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCc-----hhcchhccc-cCCCCCHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ-----HFKKPWAHE-HEPVKELVD 457 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~-----~~k~~fA~~-~~~~~~L~e 457 (609)
.||.|+|+|..|..+|..+... | .+++++|+..-...-+...+. ..+..+... ..-..++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998764 5 368888874211000000010 000000000 0001233 4
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCCC
Q 007301 458 AVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQ 503 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~ 503 (609)
+++ .+|++|=+.... ..+++++.+... .+..+|..+.|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 454 478777443322 357888888754 455678888886643
No 223
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=72.60 E-value=14 Score=39.43 Aligned_cols=125 Identities=18% Similarity=0.279 Sum_probs=87.0
Q ss_pred CCceeeeecCCCCcHHHHHHHHc--CCCeeeec--------CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HH
Q 007301 327 ERILIQFEDFANHNAFDLLEKYG--TTHLVFND--------DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AG 395 (609)
Q Consensus 327 p~~lIqfEDf~~~nAf~lL~ryr--~~~~~FND--------DiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag 395 (609)
--.+|||==...-++-.+|++-- +++==||- ...+--.+|-+|++.-++..+.+|.+.++|++|.+. .|
T Consensus 90 ~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVG 169 (283)
T COG0190 90 DGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVG 169 (283)
T ss_pred cEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCc
Confidence 33567775555555566666542 11111111 133455778899999999999999999999999986 57
Q ss_pred HHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEccCCCC
Q 007301 396 TGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGR 475 (609)
Q Consensus 396 ~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g 475 (609)
--+|.+|..+ + ..+.+++|+ .++|.+.++. +|++|-.-|.++
T Consensus 170 kPla~lL~~~-----n-------aTVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~ 211 (283)
T COG0190 170 KPLALLLLNA-----N-------ATVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPH 211 (283)
T ss_pred HHHHHHHHhC-----C-------CEEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcc
Confidence 7787777652 3 235555553 1457888887 999999999999
Q ss_pred CCCHHHHHHHHccCCCcEEE
Q 007301 476 TFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 476 ~Ft~evv~~Ma~~~erPIIF 495 (609)
.|+.|+|+ +..+++
T Consensus 212 ~i~~d~vk------~gavVI 225 (283)
T COG0190 212 FIKADMVK------PGAVVI 225 (283)
T ss_pred cccccccc------CCCEEE
Confidence 99999998 555655
No 224
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=72.59 E-value=10 Score=39.84 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=72.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc-CcccCCCccCCchhcchhcccc-CCCCCHHHHHhccC
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 463 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~-GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~e~V~~vk 463 (609)
|.|+|||..|..+|-.++. .|+ -..+.++|.+ .++..... +|.+...++.... ....+ .+.++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~~-DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDAL-DLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHH-hHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999876654 366 2579999973 22211111 2444433321110 00134 456776
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc--cCcEEEecCC
Q 007301 464 PTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 525 (609)
Q Consensus 464 PtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT--~GraifASGS 525 (609)
.|++|=+.+.+ |- .=+++.+.+.+++..-+|+=.|||. ++..+-+++++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88887555543 21 1245777888899999999999997 34444454442 1233666653
No 225
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.54 E-value=22 Score=38.15 Aligned_cols=90 Identities=17% Similarity=0.322 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-.|++.=++..|.+++.++++++|.+. .|.-+|.||.. .|. .+.++.++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 3567788888899999999999999999764 68888888754 243 35555442
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 496 (609)
.++|.+.+++ +|++|-..|.++.|+.++|+ +.-||+=
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVID 228 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK------PGAVVVD 228 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 1357888887 99999999999999999998 5556643
No 226
>PLN02602 lactate dehydrogenase
Probab=72.27 E-value=13 Score=40.50 Aligned_cols=124 Identities=19% Similarity=0.334 Sum_probs=76.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCC---CCHHHHHh
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---KELVDAVN 460 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~---~~L~e~V~ 460 (609)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ..+ .+..+ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 365 3689999973111111111133322 22221 121 24444 66
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc--CcEEEec
Q 007301 461 AIKPTILIGTSGQG---RTFTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFAS 523 (609)
Q Consensus 461 ~vkPtvLIG~S~~~---g~Ft~------------evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~--GraifAS 523 (609)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-++++++ -+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 6 89988665553 3 233 7788888999999999999997 344445555552 1336677
Q ss_pred CCC
Q 007301 524 GSP 526 (609)
Q Consensus 524 GSP 526 (609)
|.-
T Consensus 179 gt~ 181 (350)
T PLN02602 179 GTN 181 (350)
T ss_pred cch
Confidence 643
No 227
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.82 E-value=7 Score=41.69 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=53.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc--ccCCC--ccCCchhcchhccccCCCCCHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSR--LESLQHFKKPWAHEHEPVKELVDA 458 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL--i~~~R--~~~L~~~k~~fA~~~~~~~~L~e~ 458 (609)
..||.|+|||+-|+.+|..+... | . -.+|..|..-. |.+.+ .+.++.. ..+.....-..++.++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~~-~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGND-VVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCCC-cccCCCeEEECCHHHH
Confidence 37899999999999999988653 4 1 23555443211 11111 0011100 0000000112467777
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCC
Q 007301 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 501 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt 501 (609)
++. +|++| ++.+. -+.+++++.++.+ .++.+|..++|--
T Consensus 75 ~~~--aDlVi-lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 ANC--ADVVV-MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred Hhc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 765 56544 33222 4688888888753 3444566777754
No 228
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.48 E-value=26 Score=37.60 Aligned_cols=96 Identities=11% Similarity=0.236 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-.|++.=|+..+.+++.++++++|.+. -|.-+|.||... +.. ....+.++.++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 3567788888899999999999999999764 677888777531 110 00234444442
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
.++|.+.+++ +|++|-..|.++.++.|+|+ +.-||+=-.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDvG 233 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDVG 233 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEcc
Confidence 1358888887 99999999999999999998 556665443
No 229
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=71.26 E-value=18 Score=39.83 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc--
Q 007301 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-- 447 (609)
Q Consensus 370 ll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-- 447 (609)
+..++.-....|++.|++|+|-+.-.+++++.|.+. .|+.. ..+-+. +.++ +.+...-+.+..
T Consensus 277 ~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~ 341 (427)
T PRK02842 277 ARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGV 341 (427)
T ss_pred HHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCC
Confidence 455566666778889999999988899999998764 37632 111110 0111 101111111111
Q ss_pred ---ccCCCCCHHHHHhccCCcEEEEcc
Q 007301 448 ---EHEPVKELVDAVNAIKPTILIGTS 471 (609)
Q Consensus 448 ---~~~~~~~L~e~V~~vkPtvLIG~S 471 (609)
+..+...+.+.|+..|||.|||-|
T Consensus 342 ~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 342 RIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred EEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 112223568899999999999976
No 230
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=70.35 E-value=84 Score=35.92 Aligned_cols=197 Identities=20% Similarity=0.172 Sum_probs=110.1
Q ss_pred cCCCeeeecCC---cchHHHHHHHHHHHHHH------------------hCCCCCCceEEEeCcchHHHHHHHHHHHHHH
Q 007301 349 GTTHLVFNDDI---QGTASVVLAGLISAMKF------------------LGGSLADQRFLFLGAGEAGTGIAELIALEIS 407 (609)
Q Consensus 349 r~~~~~FNDDi---QGTaaV~LAgll~Alr~------------------~g~~L~d~rivf~GAGsAg~GIA~li~~~~~ 407 (609)
+..+++.|--- +.+|=-+++.+|+..|. .|..|.++++.|+|-|..|..+|+.+...
T Consensus 83 ~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f-- 160 (525)
T TIGR01327 83 ARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF-- 160 (525)
T ss_pred HCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 34666666421 24555567777766553 24568999999999999999999998642
Q ss_pred HhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEEc-c---CCCCCCCHHHHH
Q 007301 408 KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGT-S---GQGRTFTKEVVE 483 (609)
Q Consensus 408 ~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~-S---~~~g~Ft~evv~ 483 (609)
|+ +++.+|+.. .... ..+ + ......+|.|+++. .|+++=. . ...++|+++.+.
T Consensus 161 ---G~-------~V~~~d~~~--~~~~---~~~----~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~ 217 (525)
T TIGR01327 161 ---GM-------KVLAYDPYI--SPER---AEQ----L--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELA 217 (525)
T ss_pred ---CC-------EEEEECCCC--ChhH---HHh----c--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHh
Confidence 64 588888731 1110 000 0 01112479999886 8887722 1 234689999999
Q ss_pred HHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCCcccccchhhhHHHHHhCCccc
Q 007301 484 AMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRV 563 (609)
Q Consensus 484 ~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~I 563 (609)
.|. +..++.=.|.-.---|..--+|+ ..|+.-.|.=-=|++--.... .--+..|+.+-|=+|-....+
T Consensus 218 ~mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~----- 285 (525)
T TIGR01327 218 KMK---KGVIIVNCARGGIIDEAALYEAL--EEGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA----- 285 (525)
T ss_pred cCC---CCeEEEEcCCCceeCHHHHHHHH--HcCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----
Confidence 886 56677766653322222222333 356654442111110000011 112456889999887543333
Q ss_pred CHHHHHHHHHHHHcccCcC
Q 007301 564 HDDMLLAAAEALAGQVTQE 582 (609)
Q Consensus 564 td~M~laAA~aLA~~v~~e 582 (609)
...|...+++.+-+....+
T Consensus 286 ~~~~~~~~~~ni~~~~~g~ 304 (525)
T TIGR01327 286 QENVATQVAEQVLDALKGL 304 (525)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 2344555556555555433
No 231
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=70.09 E-value=8.5 Score=32.02 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=28.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 431 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~ 431 (609)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 789999999999999888542 4 6889999876665
No 232
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=69.99 E-value=4.2 Score=43.10 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++|++-+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 467899999999999999999999875 86 899999987
No 233
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=69.71 E-value=4.3 Score=45.62 Aligned_cols=131 Identities=17% Similarity=0.337 Sum_probs=84.8
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCCC-----CCH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPV-----KEL 455 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~-----~~L 455 (609)
+..||+|+||||. .-.+++...+.+...++ ...|||+|-+ .+|.+.....-+.+.+. ..+. .++
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 4579999999998 56788888777766665 4689999973 44422111122222222 1222 478
Q ss_pred HHHHhccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHccCCCcEEEecCCCC
Q 007301 456 VDAVNAIKPTILIGT--------------------------SGQGRTFT--------KEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~--------------------------S~~~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt 501 (609)
.||++. +|-.|=. .++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 888887 6555421 23444443 48899999999999999999999
Q ss_pred CCCCCCHHHHhccccC-cEEEecCCCC
Q 007301 502 SQSECTAEEAYTWSQG-RAIFASGSPF 527 (609)
Q Consensus 502 ~~aEct~e~A~~wT~G-raifASGSPF 527 (609)
+++|- -.++|+.. +.|=-+=+|+
T Consensus 150 --~~vTe-Av~r~~~~~K~VGlCh~~~ 173 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIVGLCHGPI 173 (442)
T ss_pred --HHHHH-HHHHhCCCCcEEeeCCchH
Confidence 77774 44565655 5554444443
No 234
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=69.30 E-value=8.4 Score=43.43 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=62.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc---ccCCCCCHHHHHhc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAVNA 461 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V~~ 461 (609)
+|-|+|.|..|..+|..|... |. ++++.|++ .++ .++..+.-.. ......++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999999753 63 58888873 222 2222111000 01134689999986
Q ss_pred c-CCcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecCCC
Q 007301 462 I-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNP 500 (609)
Q Consensus 462 v-kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNP 500 (609)
. +|+++| +.-+++...++|++.+.. ..+..||.=+||=
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~ 103 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNE 103 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCC
Confidence 5 588555 343455678888877664 4567899989984
No 235
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=69.12 E-value=6.5 Score=38.31 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=24.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|.|+|||..|.|||-+++.+ | -++.|+|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 689999999999999999874 6 468888874
No 236
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=69.10 E-value=5.4 Score=37.76 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.5
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 387 vf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|+|||.||+..|-.+.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999977754 375 448889986
No 237
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=69.04 E-value=21 Score=36.68 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.5
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~ 404 (609)
..||.|+|+|.-|..||..+..
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~ 24 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLH 24 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHH
Confidence 4589999999999999998865
No 238
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=68.92 E-value=7.1 Score=39.67 Aligned_cols=39 Identities=36% Similarity=0.526 Sum_probs=33.6
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 378 g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-++|++-|++++|+|.-|.-+++.++.+ |+ ++++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 3578899999999999999999998875 75 679999986
No 239
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=68.88 E-value=7.2 Score=41.84 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=27.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+..||||+|+|.||+..|+.|.+. |. ..+|.|+|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 567899999999999999998753 42 2367777764
No 240
>PRK08618 ornithine cyclodeaminase; Validated
Probab=68.87 E-value=40 Score=35.80 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=60.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc----cCCCCCHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 457 (609)
...++.|+|+|..|..++..++.. .++ +++.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999988777655442 354 789988874 222 22222222211 112467889
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEec-CCCCCCCCCCHH
Q 007301 458 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAE 509 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~e 509 (609)
+++. .|++|-++..+ ..|+ +.++ +.--|.++ |+--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9975 89998665433 2344 4443 44456666 332257888884
No 241
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=68.77 E-value=6.4 Score=40.44 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999874 76 789999987
No 242
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=68.44 E-value=11 Score=43.09 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=27.9
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 378 g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+..+++.+++|+|||.+|.+|+..+.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 446888999999999777666666653 35 2 68888873
No 243
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=68.42 E-value=10 Score=40.96 Aligned_cols=108 Identities=20% Similarity=0.377 Sum_probs=68.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc-CcccCCCccCCchhcchhccccCCC---CCHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPV---KELVDAV 459 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~-GLi~~~R~~~L~~~k~~fA~~~~~~---~~L~e~V 459 (609)
.||.++|||..|...|-+|+. .++. +.+.|+|.. +...-...| |.+-. ++....... .+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~~-~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHAA-APLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhcc-hhccCceEEecCCC-hhhh
Confidence 389999999999999888843 3542 479999987 222222222 32222 221110111 23 3556
Q ss_pred hccCCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007301 460 NAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 514 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~w 514 (609)
+. .|+.+=+.+.+ | -.-+++.+++++.+...||+-.|||. |..+|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 66 78777444443 3 13467888999999999999999998 76666
No 244
>PRK07589 ornithine cyclodeaminase; Validated
Probab=68.13 E-value=35 Score=37.12 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=64.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcccc---CCCCCHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAV 459 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~V 459 (609)
-.++.++|+|.-+..-++.++.. ..+ ++|+++|+. ..+ .+.+.+.+.+.. ....+++|+|
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~v----r~i------~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~av 191 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKAL----LGI------EEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEAV 191 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHh----CCc------eEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHHH
Confidence 47899999999887777666653 233 788888763 221 223332222211 1136899999
Q ss_pred hccCCcEEEEccCCC---CCCCHHHHHHHHccCCCcEEEec-CCCCCCCCCCHHH
Q 007301 460 NAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~e~ 510 (609)
+. .||++-++... -+|..++++ +.--|-++ |+--.+-|+.++-
T Consensus 192 ~~--ADIIvtaT~S~~~~Pvl~~~~lk------pG~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 192 EG--ADIITTVTADKTNATILTDDMVE------PGMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred hc--CCEEEEecCCCCCCceecHHHcC------CCcEEEecCCCCCCcccCCHHH
Confidence 98 99999876432 368888885 22234444 5544578998875
No 245
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=67.83 E-value=6.7 Score=39.54 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
-.|+|+|||.||+..|-.|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhccc
Confidence 3799999999999999888763 75 4778887643
No 246
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=67.83 E-value=13 Score=41.93 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=61.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc--cCCCCCHHHHHhcc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 462 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~v 462 (609)
.|-|+|.|..|..+|..|+.. |. ++++.|+. .+ ..+..++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999763 63 57777763 11 122222221100 12235788888654
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCC
Q 007301 463 -KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSN 499 (609)
Q Consensus 463 -kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN 499 (609)
+|+++| +.-+++...++|++.+..+ .+..||.=.||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444556788898887653 56789999998
No 247
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=67.52 E-value=1.5e+02 Score=33.07 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeecCCCCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQA 542 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~~p~Q~ 542 (609)
+||++|-..+.||...-= ...... .+.|=|...- |....--+++.+-.++.|+.-+.-|+-.-.. ....+|.
T Consensus 226 ~pD~vVa~VGgGg~~~Gi-~~~f~~-~~~v~iigVE-~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~-----~~~~g~~ 297 (397)
T PRK04346 226 LPDAVVACVGGGSNAIGI-FHPFID-DESVRLIGVE-AAGKGLETGKHAATLTKGRPGVLHGAKTYLL-----QDEDGQI 297 (397)
T ss_pred CCCEEEEecCccHhHHHH-HHHHhh-CCCCeEEEEe-cCCCccccccccchhhcCCeeeeccccceec-----ccCCCcc
Confidence 699999887766532211 111111 2333333321 2211112234455555666554444311111 0122344
Q ss_pred ccccc------chhhhHHHH--H-h---CCcccCHHHHHHHHHHHHcc
Q 007301 543 NNAYI------FPGLGLGLI--M-S---GAIRVHDDMLLAAAEALAGQ 578 (609)
Q Consensus 543 NN~yi------FPGlglG~l--~-s---~a~~Itd~M~laAA~aLA~~ 578 (609)
-..+- +||+|-... . + ....|||+-.++|.+.|+..
T Consensus 298 ~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~ 345 (397)
T PRK04346 298 LETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRL 345 (397)
T ss_pred CCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH
Confidence 33333 488774332 1 1 23469999999999999863
No 248
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=67.43 E-value=6.8 Score=42.14 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999876 76 799999985
No 249
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.40 E-value=15 Score=38.42 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=24.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||.|+|||+.|+.+|..+... | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999988764 4 456677764
No 250
>PRK06270 homoserine dehydrogenase; Provisional
Probab=66.78 E-value=43 Score=36.01 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=63.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccC---------C
Q 007301 384 QRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------P 451 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~---~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~---------~ 451 (609)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.++-++... ..|+.+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~~-~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLELA-LKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHHH-HHHHhccCCcccCccccc
Confidence 5899999999999999998753 22222321 122456799998887663112111 12222111 1
Q ss_pred CCCHHHHHhccCCcEEEEccCCC---CCCCHHH-HHHHHccCCCcEEE
Q 007301 452 VKELVDAVNAIKPTILIGTSGQG---RTFTKEV-VEAMASLNEKPIIF 495 (609)
Q Consensus 452 ~~~L~e~V~~vkPtvLIG~S~~~---g~Ft~ev-v~~Ma~~~erPIIF 495 (609)
..++.|+++...+||+|=++... +-...++ .+++. +.++||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~--~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE--RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH--CCCEEEc
Confidence 23889999888899999876531 2222455 44454 4578887
No 251
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=66.74 E-value=22 Score=38.95 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh
Q 007301 363 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 441 (609)
Q Consensus 363 aaV~LAgll~Alr~~g~~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~ 441 (609)
.-+|-+|++.=|+..|.+++.+++|++|-+. .|.-+|.||.. .|. .+.++.++ .
T Consensus 194 ~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~-------T------ 248 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF-------T------ 248 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------C------
Confidence 3567778888889999999999999999764 67777777754 243 34555442 1
Q ss_pred cchhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007301 442 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 483 (609)
Q Consensus 442 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 483 (609)
++|.+.++. +|++|-..|.++.|+.|+|+
T Consensus 249 -----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 -----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred -----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788887 99999999999999999998
No 252
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=66.68 E-value=97 Score=32.51 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=23.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
..++++++|+|..|+..+.++... .|. .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 478999999998776655555432 132 46887776
No 253
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=66.59 E-value=13 Score=39.37 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=74.1
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEE
Q 007301 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTIL 467 (609)
Q Consensus 388 f~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvL 467 (609)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.++..-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998864 365 26899999842111111111333322221110001123466776 8999
Q ss_pred EEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEecCCC
Q 007301 468 IGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGSP 526 (609)
Q Consensus 468 IG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~G--raifASGSP 526 (609)
|=+.+.+.. .=+++.+.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.-
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt~ 140 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGTV 140 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccch
Confidence 877666421 12467788888999999999999982 455555555421 236777643
No 254
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=66.40 E-value=9.9 Score=33.85 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=49.4
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCCcEEEE
Q 007301 390 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG 469 (609)
Q Consensus 390 GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 469 (609)
|.|..|.+++++|...-.. .+ -+=..++|+++++...+ ...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKDW--------AASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETTH--------HHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhhh--------hhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 01 24466778774444331 111122233478999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 470 TSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 470 ~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
+++ ....++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 954 3344444444444 2345554
No 255
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.03 E-value=7.4 Score=41.40 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 86 799999987
No 256
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=66.00 E-value=27 Score=34.96 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=41.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccC
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (609)
||++.|| |-.|..+++.+.+ .| .+++.+++. ..| + ....++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~-----------~~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-L-----------TDPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-C-----------CCHHHHHHHHHhCC
Confidence 6899997 8888888887764 25 357777763 111 2 11245788888889
Q ss_pred CcEEEEccCCC
Q 007301 464 PTILIGTSGQG 474 (609)
Q Consensus 464 PtvLIG~S~~~ 474 (609)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 257
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=65.92 E-value=4.5 Score=35.42 Aligned_cols=90 Identities=12% Similarity=0.190 Sum_probs=51.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccCC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 464 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 464 (609)
||.|+|+|..|......+...- .+. +=..++|.+ .+......+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~-------~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPD-------PERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSS-------HHHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCC-------HHHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 7999999999776655444320 111 234566663 1112222222221 245789999998889
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 465 TILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 465 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 45444 456666666554333 5554
No 258
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=65.54 E-value=3.8 Score=38.86 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=56.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cCCCCCHHHHHhcc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI 462 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~v 462 (609)
.||-|+|.|..|.+||+.|... |. +++..|+. .++ .+ .+... .....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~~----~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---AE----ALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---HH----HHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---hh----hhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 53 58878852 111 22 22221 2234689999998
Q ss_pred CCcEEEEccCCCCCCCHHHHHH--H-HccCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007301 463 KPTILIGTSGQGRTFTKEVVEA--M-ASLNEKPIIFSLSNPTSQSECTAEEAYTW 514 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~--M-a~~~erPIIFaLSNPt~~aEct~e~A~~w 514 (609)
.|++|=+-..+ .=.++++.. + +...+..||.=+|+-. +|.+-+-+-.+
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~~ 108 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAERL 108 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhhh
Confidence 57777432211 113444444 2 3345666777777644 55555444333
No 259
>PRK13938 phosphoheptose isomerase; Provisional
Probab=64.80 E-value=20 Score=35.89 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhh-hcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHh
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~ee-Ar~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (609)
.+.||.|+|.|..| -+|..+...|.. ++..+- +-..+-+......++.-- +=..+...|++ .+. ..
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~~--nd~~~~~~~~~------~~~--~~ 110 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAVA--NDYDYDTVFAR------ALE--GS 110 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHhh--ccccHHHHHHH------HHH--hc
Confidence 57899999999987 677777766532 111100 001122222211111000 00111122222 122 22
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCC
Q 007301 461 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNP 500 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNP 500 (609)
.-+-|++|++|..|. |+++++.+. +...-|+|.=-+||
T Consensus 111 ~~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 111 ARPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred CCCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 235789999999886 999999874 34445555544443
No 260
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=64.07 E-value=41 Score=36.42 Aligned_cols=137 Identities=15% Similarity=0.247 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeee-cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcch
Q 007301 315 HEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN-DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGE 393 (609)
Q Consensus 315 dEfv~Av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN-DDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGs 393 (609)
.+.+..+ .+| .++++ +-.+. +.+.+.+.+| ..+||.| +|-.---.=+||=++.-.+..|++|++.||+++|-+.
T Consensus 92 ~DTarvl-s~y-~D~iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~ 166 (334)
T PRK01713 92 KDTARVL-GRM-YDAIE-YRGFK-QSIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDAR 166 (334)
T ss_pred HHHHHHH-HHh-CCEEE-EEcCc-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCc
Confidence 3344333 446 55444 33333 3344455555 3689999 3334445667888888777777789999999999874
Q ss_pred HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-c---CCCCCHHHHHhccCCcEEEE
Q 007301 394 AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVDAVNAIKPTILIG 469 (609)
Q Consensus 394 Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG 469 (609)
- ++++-++.++.+ .|+ +|.++-.+++.-.+ + .-+.-+.+++. . ....++.|+++. .||+.-
T Consensus 167 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVyt 231 (334)
T PRK01713 167 N--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVHT 231 (334)
T ss_pred c--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 478877777766 475 68888888773321 1 11111233332 1 123689999998 999997
Q ss_pred cc
Q 007301 470 TS 471 (609)
Q Consensus 470 ~S 471 (609)
.+
T Consensus 232 ~~ 233 (334)
T PRK01713 232 DV 233 (334)
T ss_pred cc
Confidence 53
No 261
>PLN02688 pyrroline-5-carboxylate reductase
Probab=63.95 E-value=15 Score=37.12 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.6
Q ss_pred eEEEeCcchHHHHHHHHHHHH
Q 007301 385 RFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~ 405 (609)
||.|+|.|..|..+|+-|++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~ 22 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS 22 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC
Confidence 689999999999999998753
No 262
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=63.94 E-value=13 Score=40.42 Aligned_cols=95 Identities=23% Similarity=0.380 Sum_probs=55.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc--ccCCCccCCchhcchhccc---cCC---CCCH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHE---HEP---VKEL 455 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL--i~~~R~~~L~~~k~~fA~~---~~~---~~~L 455 (609)
.+|.++|||+=|+.+|..+.+. | -.=++|..|.+=. |..+|. ..+|-.. ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g-----~~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----G-----HEVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----C-----CeeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999864 4 1236777765311 112221 1112211 111 2578
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHH-ccCCCcEEEecC
Q 007301 456 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMA-SLNEKPIIFSLS 498 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma-~~~erPIIFaLS 498 (609)
.++++. --.+|++++++ |.+++++.|. ...++.+|.-+|
T Consensus 66 ~~a~~~-ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG-ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc-CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888886 13345566553 5778888875 233445554444
No 263
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=63.48 E-value=31 Score=36.30 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.3
Q ss_pred hCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh----------cchh
Q 007301 377 LGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----------KKPW 445 (609)
Q Consensus 377 ~g~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~----------k~~f 445 (609)
++..++..||+|.|| |-.|.-+++.|+.. | .+++.+|.. .......++.. +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445577789999997 99998888888752 4 257777752 11110111111 0111
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCcEEEecC
Q 007301 446 AH-EHEPVKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 446 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 498 (609)
-. +..+...|.++++. ||++|=+.+.... .|..+++++.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 22222356777774 9999988875432 2457888888776678998754
No 264
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=63.48 E-value=24 Score=36.81 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=26.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999998888653 53 1468888874
No 265
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=63.48 E-value=1.8e+02 Score=29.86 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=28.4
Q ss_pred CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcc
Q 007301 477 FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 514 (609)
Q Consensus 477 Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~w 514 (609)
.+++.++.+++..+.|+++-++.... +.++++.-++
T Consensus 183 ~~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l 218 (243)
T cd00377 183 KDPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL 218 (243)
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC
Confidence 38888999988888999987655432 6889998887
No 266
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=63.11 E-value=6.3 Score=45.30 Aligned_cols=165 Identities=18% Similarity=0.273 Sum_probs=84.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCC-ccCCchhcchhccccCCCCCHHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR-LESLQHFKKPWAHEHEPVKELVDAV 459 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R-~~~L~~~k~~fA~~~~~~~~L~e~V 459 (609)
+++-|.+++|||.-|++||+-++.. |+ ++|.+||.--.-+.+- ..+|-.|----++..+...+-.+.+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 4568999999999999999999987 65 7899999743322221 0123222211111111112344455
Q ss_pred hccCCcEE-----EEccCCCCCCCHHHHHHHHc--------cCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCC
Q 007301 460 NAIKPTIL-----IGTSGQGRTFTKEVVEAMAS--------LNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSP 526 (609)
Q Consensus 460 ~~vkPtvL-----IG~S~~~g~Ft~evv~~Ma~--------~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSP 526 (609)
|.+-|.+- +-.-=.|-...++-++...+ ..++-+||=|.- |.-+---|.-. ...+-+.++-+--=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtD-sRESRWLPtll-~a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTD-SRESRWLPTLL-AAAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEec-cchhhhhHHHH-HhhhcceEeeeecc
Confidence 55555432 22222222233332222111 235779997754 21122223222 22233444433333
Q ss_pred CCcccc--CCeec----CCCCCcccccchhhhHHHHHh
Q 007301 527 FDPFEY--GDNVF----VPGQANNAYIFPGLGLGLIMS 558 (609)
Q Consensus 527 F~pv~~--~G~~~----~p~Q~NN~yiFPGlglG~l~s 558 (609)
|+...+ .|-.. --+|.-+.-..||==||+..+
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 777654 33222 236777777788888887654
No 267
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.83 E-value=40 Score=39.99 Aligned_cols=108 Identities=14% Similarity=0.101 Sum_probs=62.6
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCC--------CCCCCHHHHhccccCcEEEecCCCCC
Q 007301 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFASGSPFD 528 (609)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~aEct~e~A~~wT~GraifASGSPF~ 528 (609)
++=+.++|+++|...+.. +.-.-|.....+-+|=|.+=.-||.. ..+-|.++.+++... |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 334557899999877643 45443433334555668888999963 234454444443211 11211245
Q ss_pred ccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007301 529 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 573 (609)
Q Consensus 529 pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~ 573 (609)
||..+ ..||-.=|-..+|-+--++.+...- .+.+-+-+|.+
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~ 528 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVME 528 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 56552 6788888888888766555444433 56666666643
No 268
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=62.82 E-value=9.1 Score=38.14 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+++|+|||.||+..|..+.. .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 68999999999999987754 35 358899974
No 269
>PRK00536 speE spermidine synthase; Provisional
Probab=62.69 E-value=12 Score=39.37 Aligned_cols=100 Identities=12% Similarity=0.165 Sum_probs=59.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHh--c
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN--A 461 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~--~ 461 (609)
.||+|+|+|-. |+|+-+++. . +++.|||-++-|++--+..|+..+..|.. +..+=...+.+ .
T Consensus 74 k~VLIiGGGDG--g~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~D--pRv~l~~~~~~~~~ 137 (262)
T PRK00536 74 KEVLIVDGFDL--ELAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNN--KNFTHAKQLLDLDI 137 (262)
T ss_pred CeEEEEcCCch--HHHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcC--CCEEEeehhhhccC
Confidence 89999999998 456665543 1 38999999997775443446655544432 21110112222 1
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCC
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPF 527 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF 527 (609)
-+=||+|-=| +|+++-.+.+. .+++ -+|-.+.-+||||
T Consensus 138 ~~fDVIIvDs----~~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 138 KKYDLIICLQ----EPDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred CcCCEEEEcC----CCChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 3578888654 36666665543 2222 3566677788887
No 270
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=62.55 E-value=13 Score=41.13 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCcc---CCchhcchhcc
Q 007301 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE---SLQHFKKPWAH 447 (609)
Q Consensus 371 l~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~---~L~~~k~~fA~ 447 (609)
+.++.-....|...|++++|-+.-..++++.+.+ .|+.. .. +++.++.+ .+... .-+.
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~--------~~~~~~~~~~~~~~~~-~~~~- 359 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VA--------AVTTTGSPLLQKLPVE-TVVI- 359 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EE--------EEeCCCCHHHHhCCcC-cEEe-
Confidence 3444444456678999999988888999999753 48621 11 11211111 11111 0111
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccC
Q 007301 448 EHEPVKELVDAVNAIKPTILIGTSG 472 (609)
Q Consensus 448 ~~~~~~~L~e~V~~vkPtvLIG~S~ 472 (609)
.+...|++.++..+||++||-|-
T Consensus 360 --~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 360 --GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred --CCHHHHHHHHhhcCCCEEEECcc
Confidence 12246788898899999998663
No 271
>PRK07877 hypothetical protein; Provisional
Probab=62.46 E-value=17 Score=43.26 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=66.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch----------hcchhccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH----------FKKPWAHE 448 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~----------~k~~fA~~ 448 (609)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|-+=+=.+ +|+. .|..-|++
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~s----NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELS----NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEccc----ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 888899888765 63 278999998733221 2333 22211211
Q ss_pred -----cCC---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007301 449 -----HEP---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 449 -----~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 498 (609)
.+. + .++.+.++. .|++|-++- +.=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 011 1 256666665 788887664 344667777778888999999875
No 272
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=62.26 E-value=10 Score=40.67 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999865 76 899999986
No 273
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=62.06 E-value=21 Score=38.45 Aligned_cols=130 Identities=19% Similarity=0.356 Sum_probs=77.7
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC-cccCCCccCCchhcchhccccC--CCCCH
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRLESLQHFKKPWAHEHE--PVKEL 455 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G-Li~~~R~~~L~~~k~~fA~~~~--~~~~L 455 (609)
.+.+..||.++|+|..|+.+|-.|+.- |++ +++.++|-+= .+--...| |+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 455678999999999999999888763 773 6788999641 11112222 43 3335554311 11233
Q ss_pred HHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc-----
Q 007301 456 VDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ----- 516 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~----- 516 (609)
. +-+ ..++.|=+.+..+. .=+.+|..+.++.+.-|++-.|||. |.++|--
T Consensus 84 ~-~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 S-VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred c-ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 2 122 24555544443322 1246777778899999999999998 7666521
Q ss_pred --CcEEEecCCCCCccc
Q 007301 517 --GRAIFASGSPFDPFE 531 (609)
Q Consensus 517 --GraifASGSPF~pv~ 531 (609)
-..+|.||.-.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 123556665555443
No 274
>PRK06046 alanine dehydrogenase; Validated
Probab=61.96 E-value=47 Score=35.37 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=64.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc----cCCCCCHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 457 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 457 (609)
.-.++.|+|+|..|...++.+... .++ ++++++|++ .++ .+.+.+.+.+. .....++.|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988777666432 243 789999885 121 22222222211 112357888
Q ss_pred HHhccCCcEEEEccC-CCCCCCHHHHHHHHccCCCcEEEec-CCCCCCCCCCHHH
Q 007301 458 AVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 510 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~aEct~e~ 510 (609)
+++ .|+++-++. ...+|..++++ +.-.|-++ |+-..+-|+.+|-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 798887653 33478888775 33356666 4544679999874
No 275
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=61.25 E-value=7.3 Score=40.91 Aligned_cols=33 Identities=36% Similarity=0.775 Sum_probs=27.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-..+-|+|||-.|-|||+..+.. |+ ++||+|++
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 34678999999999999988764 75 69999985
No 276
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=61.23 E-value=43 Score=36.43 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchh
Q 007301 366 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 445 (609)
Q Consensus 366 ~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f 445 (609)
+.|+.++|=.+..++ --++.|+|+|.-+-.. ++++.+..++ ++|++.|++ .+....+...+
T Consensus 115 aAasavAa~~LA~~d--a~~laiIGaG~qA~~q----l~a~~~v~~~------~~I~i~~r~-------~~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKD--ASTLAIIGAGAQARTQ----LEALKAVRDI------REIRVYSRD-------PEAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCC--CcEEEEECCcHHHHHH----HHHHHhhCCc------cEEEEEcCC-------HHHHHHHHHHH
Confidence 345666666665553 2478899999875444 4444443354 677777763 11122222222
Q ss_pred ccc----cCCCCCHHHHHhccCCcEEEEccC-CCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhc
Q 007301 446 AHE----HEPVKELVDAVNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 513 (609)
Q Consensus 446 A~~----~~~~~~L~e~V~~vkPtvLIG~S~-~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~ 513 (609)
.+. .....+++++|+. .|+++.++. ..-+|..++|+. .--|.-.=||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 222 2345799999998 999999853 335888888871 223444446777899999976654
No 277
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=61.16 E-value=17 Score=38.63 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCC--CcEEEecCCCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMASLNE--KPIIFSLSNPT 501 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma~~~e--rPIIFaLSNPt 501 (609)
+-|++||+|..|. |+++++.+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999887 9999998864333 35544334555
No 278
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=60.89 E-value=12 Score=35.92 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=29.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|++.++||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 58899999999999999888888764 4 467777643
No 279
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.89 E-value=22 Score=36.08 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
||.|+|+|..|..+++-+... |.. .+.+++.|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 699999999999999988653 531 244666665
No 280
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=60.75 E-value=12 Score=37.35 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
+|++.++||+|+|..|.-.++.+..+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888887763 4 47888865
No 281
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.28 E-value=32 Score=35.59 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G-~s~eeAr~~i~lvDs~ 427 (609)
+||.|+|+|..|..+|..+... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999988653 4 21 2467777763
No 282
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=59.81 E-value=11 Score=40.44 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=26.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi 430 (609)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999988443 123 578888886433
No 283
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=59.80 E-value=5.7 Score=42.40 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~ 405 (609)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999988774
No 284
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.36 E-value=23 Score=34.46 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=23.7
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 381 L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+++++++|.|+ |..|..+|+.++. .| -+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 56789999996 6666666666643 35 367887764
No 285
>PRK12828 short chain dehydrogenase; Provisional
Probab=59.15 E-value=21 Score=34.08 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+++.+++|.|| |..|..+|+.++ + .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLA----A-RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 467789999997 445555555443 3 363 58888874
No 286
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=58.96 E-value=42 Score=34.56 Aligned_cols=86 Identities=12% Similarity=0.295 Sum_probs=51.5
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccC
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (609)
||+|.|| |-.|.-+++.+.. .| +++.+|+..- .+.-+......+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~--------------~~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHST--------------DYCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEeccccc--------------cccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888776653 13 3566665310 01111122235777888889
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHccCCCcEEEecC
Q 007301 464 PTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 464 PtvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFaLS 498 (609)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776554321 334556655554 46887544
No 287
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=58.75 E-value=8.4 Score=40.57 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccC
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 432 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~ 432 (609)
+|++++|+++|.|..|-=+++.|+. .|+ .+|.|+|.+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999888777777765 486 89999999866443
No 288
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=58.70 E-value=30 Score=37.14 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=26.7
Q ss_pred CHHHHHhccCCcE-EEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 454 ELVDAVNAIKPTI-LIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 454 ~L~e~V~~vkPtv-LIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
.|.+.... .|+ ++|-|-..+ |...++|+|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 46666665 787 677664333 5666999999 6899997
No 289
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=58.59 E-value=34 Score=38.61 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=74.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHH-HH-HhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHh
Q 007301 384 QRFLFLGA-GEAGTGIAELIALE-IS-KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 384 ~rivf~GA-GsAg~GIA~li~~~-~~-~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (609)
.||.|+|| |..|..+|-.|+.. +. ..+|+ -..+.++|.+-=...+-.-+|.+-.-++-++..-..+-.|..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999987652 10 00133 2478888874211111110133332233221110123346677
Q ss_pred ccCCcEEEEccCCCCC--------------CCHHHHHHHHc-cCCCcEEEecCCCCCCCCCCHHHHhccccC--cEEEec
Q 007301 461 AIKPTILIGTSGQGRT--------------FTKEVVEAMAS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 523 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~-~~erPIIFaLSNPt~~aEct~e~A~~wT~G--raifAS 523 (609)
. .|++|=+.+.+.. .=+++.+.+.+ .+..-||+-.|||- ....--+++++.. .-+|.+
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGt 250 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHA 250 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEe
Confidence 6 8988866666421 12467777888 58999999999997 2233333444311 335555
Q ss_pred CCC
Q 007301 524 GSP 526 (609)
Q Consensus 524 GSP 526 (609)
|.=
T Consensus 251 gT~ 253 (444)
T PLN00112 251 LTR 253 (444)
T ss_pred ecc
Confidence 543
No 290
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=58.57 E-value=11 Score=40.73 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=23.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 68999999999999988764 364 46666654
No 291
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=58.42 E-value=12 Score=39.87 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.+|+|+|||-+|+.+|-.|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999888763 5 4688998864
No 292
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=58.28 E-value=86 Score=33.90 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=95.1
Q ss_pred HhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchh-ccccCCCCC
Q 007301 376 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKE 454 (609)
Q Consensus 376 ~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f-A~~~~~~~~ 454 (609)
..|..+...++-|+|.|..|..||+.+. ++ |+ +|...|++.. ++..+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 3456788999999999999999999987 43 64 4555665422 1111111 22 123
Q ss_pred HHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHH-HhccccCcEEEecCC-C--
Q 007301 455 LVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE-AYTWSQGRAIFASGS-P-- 526 (609)
Q Consensus 455 L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~-A~~wT~GraifASGS-P-- 526 (609)
|.|.++. .|+|+-.. ...++|+++.++.|. +.-+|.=.|. -++-=|+ .++.=+-.-|.+-|. =
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR----G~~VDe~ALi~AL~~g~i~gaglDV~e 264 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR----GGLVDEQALIDALKSGKIAGAGLDVFE 264 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHhCCcceEEeeecC
Confidence 8899987 99988543 123699999999997 5556554443 3333232 222222233443332 0
Q ss_pred CCccccCCeec-CCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007301 527 FDPFEYGDNVF-VPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 580 (609)
Q Consensus 527 F~pv~~~G~~~-~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~aLA~~v~ 580 (609)
++|...+-.-. -++. .|..+-|=+|.+..-++ ..|...+.+.|-+.+.
T Consensus 265 ~Ep~~~d~~l~~l~~~-~~vvltPHia~at~ea~-----~~m~~~~~~nl~~~~~ 313 (324)
T COG1052 265 NEPALFDHPLLRLDNF-PNVVLTPHIASATEEAR-----KAMAELALENLEAFFD 313 (324)
T ss_pred CCCCCCChhHhhccCC-CCEEEccccccccHHHH-----HHHHHHHHHHHHHHHc
Confidence 01111111111 1333 56888998888775554 5566666666666653
No 293
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=58.25 E-value=14 Score=39.72 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=44.0
Q ss_pred eecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc-chHHHHHHHHHHH
Q 007301 355 FNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 404 (609)
Q Consensus 355 FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GA-GsAg~GIA~li~~ 404 (609)
|-.---+||-++.-+++-+....|.+|++.++.|+|| |..|.+||+.|.-
T Consensus 139 ~ttgns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 139 FTTGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred cccCCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 3344458999999999999999999999999999998 8999999999865
No 294
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.24 E-value=35 Score=35.08 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 378 g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+..+++.+++|.||++ ||...++..+.+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4557788999999843 444445554444 36 368888875
No 295
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.21 E-value=14 Score=37.07 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=29.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|+++|+||+|+|..|..-++.|+.+ | .++.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999888764 5 468888874
No 296
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=58.09 E-value=12 Score=40.02 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=23.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.|+|+|||.||...|..+.+. |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999877653 54 46666665
No 297
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=57.41 E-value=24 Score=39.20 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=47.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCcc--CCchhcch--hc
Q 007301 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE--SLQHFKKP--WA 446 (609)
Q Consensus 371 l~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~--~L~~~k~~--fA 446 (609)
..++.-....|++.|+++++.+.-..++++++.+ .|+. +..+.+. .....+ .+...... ..
T Consensus 314 ~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~~~~~~v 378 (456)
T TIGR01283 314 RPALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELMGEGTVM 378 (456)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHcCCCeEE
Confidence 4444444567889999998888888899987653 4872 2222111 111100 01111100 00
Q ss_pred cccCCCCCHHHHHhccCCcEEEEc
Q 007301 447 HEHEPVKELVDAVNAIKPTILIGT 470 (609)
Q Consensus 447 ~~~~~~~~L~e~V~~vkPtvLIG~ 470 (609)
.+..+...+.+.++..+||++||-
T Consensus 379 ~~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 379 LDDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred EeCCCHHHHHHHHhhcCCCEEEEc
Confidence 011122458888899999999985
No 298
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=57.38 E-value=35 Score=36.50 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~ 404 (609)
|++.||.|+|+|..|-++|..+..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999998875
No 299
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=57.26 E-value=20 Score=38.76 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007301 385 RFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~ 404 (609)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 300
>PRK05993 short chain dehydrogenase; Provisional
Probab=57.08 E-value=28 Score=35.07 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=20.4
Q ss_pred CceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..+++|.|| |..|..+|+.++ + .| -++++++++
T Consensus 4 ~k~vlItGasggiG~~la~~l~----~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----S-DG-------WRVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----H-CC-------CEEEEEECC
Confidence 357999998 444444555443 3 36 368888764
No 301
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=57.07 E-value=6.5 Score=42.03 Aligned_cols=91 Identities=21% Similarity=0.288 Sum_probs=51.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCC----chhcchhcc-ccCCCCCHHHHHh
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL----QHFKKPWAH-EHEPVKELVDAVN 460 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L----~~~k~~fA~-~~~~~~~L~e~V~ 460 (609)
|+++|+|..|..+++.|++. ... .++.+.|++ ..+.+.+ ...+..+.+ +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 78999999999999888753 111 278888884 1111111 011111111 2222345888888
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
. .|++|-+++.. ++..|+++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 7 69999988755 888888875543 234444
No 302
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=56.55 E-value=52 Score=35.84 Aligned_cols=33 Identities=15% Similarity=0.433 Sum_probs=26.6
Q ss_pred CceEEEeC-cchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~G-AGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..+|.|+| +|..|..+|..+..+ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899999 999999999988763 53 47888874
No 303
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.31 E-value=33 Score=35.93 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=53.9
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh--cchhccccCCCCCHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAHEHEPVKELVDA 458 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~--k~~fA~~~~~~~~L~e~ 458 (609)
....||.|+|+|+-|..+|-.+.++ | .++.++++... ..-+...+.-. ...+-.......+-.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 69 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSAED 69 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcchhh
Confidence 3456899999999999999888653 4 34455554321 11110011000 00000000001111122
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007301 459 VNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 502 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 502 (609)
+. .+|++| ++... .-++++++.+... .+..+|+.|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 367766 44322 3478888888653 35667888988664
No 304
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=56.25 E-value=1.1e+02 Score=32.95 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=70.9
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCC--------CCCCCHHHHhccccCcEEEec-CC
Q 007301 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFAS-GS 525 (609)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~--------~aEct~e~A~~wT~GraifAS-GS 525 (609)
+.++=+..||+++|..++.+ +==.++-+.+ ++-||=|.+=.-||-. ..+.|.+++++.+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs-l~it~ia~~~-~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS-LSITELAEAL-KRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC-CCHHHHHHHh-CCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 34444556799999987754 2222333333 5556668888899973 3577777776542 111112 31
Q ss_pred CCCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHH
Q 007301 526 PFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEA 574 (609)
Q Consensus 526 PF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~a 574 (609)
.||. ..+.||-.=|-..+|-+.-++.+..---.|.+.+-++.+.
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~ 220 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQ 220 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 1122 2467888999999999888888777666788888877765
No 305
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=56.15 E-value=56 Score=32.67 Aligned_cols=78 Identities=15% Similarity=0.273 Sum_probs=43.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh----cchhcc-ccCCCCCHHHH
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----KKPWAH-EHEPVKELVDA 458 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~----k~~fA~-~~~~~~~L~e~ 458 (609)
+|+|.|| |..|-.+++.++.. |- ..+++.+|+... ..+.+.+... ...+-. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888887 77887777776543 31 136777775210 0111111111 111111 22233467888
Q ss_pred HhccCCcEEEEccCCC
Q 007301 459 VNAIKPTILIGTSGQG 474 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~ 474 (609)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 306
>PLN02240 UDP-glucose 4-epimerase
Probab=56.07 E-value=28 Score=35.94 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=59.3
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCch------hcchhcc-ccCC
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH------FKKPWAH-EHEP 451 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~------~k~~fA~-~~~~ 451 (609)
.|+..+|+|.|| |-.|..+++.|++. | .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 77787777777642 5 3678887532100000000000 0111111 1222
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCcEEEecC
Q 007301 452 VKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 452 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Ft~evv~~Ma~~~erPIIFaLS 498 (609)
..++.++++..+||++|=+.+.... -+..++++|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2457777777789999987765321 1335667776666567887533
No 307
>PRK06184 hypothetical protein; Provisional
Probab=56.06 E-value=14 Score=40.89 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=26.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++..|+|+|||.+|+..|-+|.. .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 46789999999999999988765 375 46677764
No 308
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=55.92 E-value=23 Score=36.61 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=29.0
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCCC
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 501 (609)
-+-|++||.|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 117 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 36799999999887 999999875 344557776667776
No 309
>PRK07233 hypothetical protein; Provisional
Probab=55.42 E-value=13 Score=39.33 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+|+|||-||+..|..|.+. | .++.++++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999998877653 6 468888776
No 310
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=55.02 E-value=50 Score=36.08 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||.|+|+|..|..+|..++.. | .+++.+|.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 799999999999999988753 5 357888864
No 311
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=54.96 E-value=34 Score=35.22 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||.|+|+|..|..+|..+... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999988753 53 57777764
No 312
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.81 E-value=47 Score=37.30 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=49.7
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHh
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (609)
+.++|++|+|.|..|+..++++.. .|. ++.+.|.+ ..+ ++..++.-++ ........+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~~g~~-~~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAERGVA-TVSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHhCCCE-EEcCcchHhHhh
Confidence 356899999999999999976543 363 57778853 111 1111110000 001112234454
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEE
Q 007301 461 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 494 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPII 494 (609)
. +|++|=.++.+ .-++++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 4 78888666766 34566655544 346666
No 313
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.80 E-value=23 Score=40.25 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=27.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+-...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999887754 363 47788853
No 314
>PRK07236 hypothetical protein; Provisional
Probab=54.73 E-value=18 Score=38.49 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~ 405 (609)
....+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC
Confidence 4568999999999999999888763
No 315
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=54.65 E-value=12 Score=35.32 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=28.1
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 387 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 387 vf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998864 1123468999999655
No 316
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=54.43 E-value=33 Score=33.52 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.++..+++|.|| |..|..+++.++ + .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~----~-~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELA----R-AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------eEEEEeCC
Confidence 356778999998 555555555554 3 363 57777764
No 317
>PRK06847 hypothetical protein; Provisional
Probab=54.17 E-value=17 Score=38.02 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.0
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~ 404 (609)
..+|+|+|||.||+..|-.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999988764
No 318
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=54.02 E-value=12 Score=40.88 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||||+|+|.||+..|+.|.+. +- .-+|.|+|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 11 1357777664
No 319
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.01 E-value=20 Score=40.67 Aligned_cols=104 Identities=23% Similarity=0.354 Sum_probs=65.8
Q ss_pred CCCCccccchhhhhHHhhhCCCCCCceeeEEe-ecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCc
Q 007301 251 LGCHGMGIPVGKLSLYTALGGIRPSACLPVTI-DVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI 329 (609)
Q Consensus 251 lG~~GmgI~iGKl~LYta~gGI~P~~~LPI~L-DvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~ 329 (609)
.|+-|. ||+++-.|.|+-==-...-+.| .|+.| .+ +...+.+ .= ++-
T Consensus 241 YGPPGT----GKSS~IaAmAn~L~ydIydLeLt~v~~n-~d-----------------------Lr~LL~~---t~-~kS 288 (457)
T KOG0743|consen 241 YGPPGT----GKSSFIAAMANYLNYDIYDLELTEVKLD-SD-----------------------LRHLLLA---TP-NKS 288 (457)
T ss_pred eCCCCC----CHHHHHHHHHhhcCCceEEeeeccccCc-HH-----------------------HHHHHHh---CC-CCc
Confidence 455553 7999999999865333666666 66643 21 2333333 33 778
Q ss_pred eeeeecCCCCcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 007301 330 LIQFEDFANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391 (609)
Q Consensus 330 lIqfEDf~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GA 391 (609)
+|-+|||.. +|.+=++-.++-.-|.+ .-.-|+|.||||++--.--.=.|.||+|+=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 899999953 45544554444333333 4567999999999765444555788888754
No 320
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=53.63 E-value=8.6 Score=40.37 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=26.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
+|||+|+|.||+-.|+.+.... . ...+|.|+|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999998888775421 0 1357889987653
No 321
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=53.59 E-value=20 Score=39.21 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=45.8
Q ss_pred HHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhc-----c
Q 007301 373 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA-----H 447 (609)
Q Consensus 373 Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA-----~ 447 (609)
++......|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... +.....+..+. -
T Consensus 277 ~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~v~ 340 (410)
T cd01968 277 ELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTVIV 340 (410)
T ss_pred HHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcEEE
Confidence 33334456678999999988888999986643 4873 2222111 1111 00111111110 0
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccC
Q 007301 448 EHEPVKELVDAVNAIKPTILIGTSG 472 (609)
Q Consensus 448 ~~~~~~~L~e~V~~vkPtvLIG~S~ 472 (609)
...+...+.+.++..+||++||-|.
T Consensus 341 ~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 341 DDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred eCCCHHHHHHHHhhcCCCEEEECCc
Confidence 1111234668889999999999754
No 322
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=53.33 E-value=18 Score=36.46 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeec
Confidence 38999999999999988876 36 489999998
No 323
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.23 E-value=20 Score=39.47 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=24.1
Q ss_pred HhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 007301 376 FLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 376 ~~g~~L~d~rivf~GAGsAg~GIA~li~~ 404 (609)
..+..++.++++|+|+|.+|+.+|+.+.+
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 34556788899999999999999888764
No 324
>PRK08163 salicylate hydroxylase; Provisional
Probab=52.93 E-value=17 Score=38.32 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.9
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~ 404 (609)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999877754
No 325
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=52.79 E-value=20 Score=39.61 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.6
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+....+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4567899999999999999988864 25 367888864
No 326
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=52.31 E-value=51 Score=35.27 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=57.5
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh--cchhcc-ccCCCCCHHH
Q 007301 382 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAH-EHEPVKELVD 457 (609)
Q Consensus 382 ~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~--k~~fA~-~~~~~~~L~e 457 (609)
+++||+|.|| |-.|..+++.|.+ .| -+++.+|+..- ..+... ...|-. +..+...+.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999888888865 25 36888886421 011110 111111 1112223445
Q ss_pred HHhccCCcEEEEccCCCC--C---------------CCHHHHHHHHccCCCcEEEecC
Q 007301 458 AVNAIKPTILIGTSGQGR--T---------------FTKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~~~g--~---------------Ft~evv~~Ma~~~erPIIFaLS 498 (609)
+++ ++|++|=+.+..+ - .|..+++++.+..-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 554 5899998875431 0 2356778777776778998654
No 327
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.24 E-value=18 Score=37.83 Aligned_cols=22 Identities=50% Similarity=0.702 Sum_probs=19.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~ 405 (609)
.||.|+|||..|.|||.+++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 4899999999999999988764
No 328
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=52.22 E-value=75 Score=30.39 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMA 486 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma 486 (609)
+-|++|++|..|. |+++++.+.
T Consensus 101 ~~Dv~I~iS~SG~--t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSGN--SPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHH
Confidence 4699999998775 999999986
No 329
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=52.22 E-value=20 Score=38.71 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
.||||+|+|.||+..|..+... |- .-+|.|+|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999887543 21 137888888654
No 330
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.21 E-value=18 Score=37.25 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999988653 5 357888863
No 331
>PRK09126 hypothetical protein; Provisional
Probab=52.07 E-value=18 Score=38.23 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.1
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~ 404 (609)
+..|+|+|||.||+..|-.+.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4679999999999999988865
No 332
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=51.92 E-value=3.3e+02 Score=29.17 Aligned_cols=136 Identities=13% Similarity=0.176 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeeec--CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCc
Q 007301 314 LHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFND--DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 391 (609)
Q Consensus 314 idEfv~Av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FND--DiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GA 391 (609)
+.+.+..+ .+| .++++ +-.+. +...+.+.+| ..+||.|- +..--=.=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~vl-s~y-~D~iv-iR~~~-~~~~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTL-SGY-SDAIV-IRHPL-EGAARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHH-HHh-CCEEE-EECCc-hhHHHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 34444443 456 44444 44443 3344455566 47899995 333344556777777655555 699999999998
Q ss_pred chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cC---CCCCHHHHHhccCCcEE
Q 007301 392 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HE---PVKELVDAVNAIKPTIL 467 (609)
Q Consensus 392 GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~---~~~~L~e~V~~vkPtvL 467 (609)
|.= .-+|+-++.++.+ .|+ ++.++-.+|+- +++.....++. .. ...++.|+|+. .||+
T Consensus 159 ~~~-~~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKY-GRTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCC-CcHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 631 1455666665555 475 57788777761 22222223322 11 13689999997 9999
Q ss_pred EEccCC
Q 007301 468 IGTSGQ 473 (609)
Q Consensus 468 IG~S~~ 473 (609)
.-.+-+
T Consensus 221 yt~~~~ 226 (301)
T TIGR00670 221 YVTRIQ 226 (301)
T ss_pred EECCcc
Confidence 987654
No 333
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=51.73 E-value=60 Score=38.38 Aligned_cols=104 Identities=16% Similarity=0.227 Sum_probs=59.7
Q ss_pred HHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEE
Q 007301 343 DLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW 422 (609)
Q Consensus 343 ~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~ 422 (609)
.+++||..++=-|+-... .++.|-. ..++.||+++|.|.-|.-+.-.|+. .|+ .+|.
T Consensus 101 a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~ 157 (637)
T TIGR03693 101 ALLDRYAAQIEFIEADAD----------SGALKFE--LSRNAKILAAGSGDFLTKLVRSLID-----SGF------PRFH 157 (637)
T ss_pred HHHHHHHHHHHHHHHhcc----------Cchhhhh--hhhcccEEEEecCchHHHHHHHHHh-----cCC------CcEE
Confidence 477999876544433211 1122222 2289999999999887777666654 487 7888
Q ss_pred EEcccCcccCCCccCCchhcchhccc-c----------CCCCCHHHHHhccCCcEEEEccCCC
Q 007301 423 LVDSKGLIVSSRLESLQHFKKPWAHE-H----------EPVKELVDAVNAIKPTILIGTSGQG 474 (609)
Q Consensus 423 lvDs~GLi~~~R~~~L~~~k~~fA~~-~----------~~~~~L~e~V~~vkPtvLIG~S~~~ 474 (609)
.+|.+=. .++.. .+.+. ..-|++ . ....++.|+++. -|++|=+|..+
T Consensus 158 ~vd~D~v-~SNln-RIgEl-~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 158 AIVTDAE-EHALD-RIHEL-AEIAEETDDALLVQEIDFAEDQHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred EEecccc-chhhh-HHHHH-HHHHHHhCCCCceEeccCCcchhHHHhhcC--CcEEEEECCCC
Confidence 8876544 22211 01122 233332 1 112467777776 57888777655
No 334
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=51.67 E-value=18 Score=37.25 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.1
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.+..++|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 35689999999999998877654 363 688888763
No 335
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.64 E-value=34 Score=33.24 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=40.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcc--------hhcc-ccC
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--------PWAH-EHE 450 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~--------~fA~-~~~ 450 (609)
.|++.+++|.||.. ||...|+..+.+ .| -++++++++. + .+..... .+.+ +..
T Consensus 2 ~~~~k~~lItG~sg---~iG~~la~~l~~-~G-------~~v~~~~r~~----~---~~~~~~~~~~~~~~~~~~~~D~~ 63 (252)
T PRK06138 2 RLAGRVAIVTGAGS---GIGRATAKLFAR-EG-------ARVVVADRDA----E---AAERVAAAIAAGGRAFARQGDVG 63 (252)
T ss_pred CCCCcEEEEeCCCc---hHHHHHHHHHHH-CC-------CeEEEecCCH----H---HHHHHHHHHhcCCeEEEEEcCCC
Confidence 46778999999831 444445554444 35 3578777641 1 1111111 1111 222
Q ss_pred CCCCHHHHHhcc-----CCcEEEEccCCC
Q 007301 451 PVKELVDAVNAI-----KPTILIGTSGQG 474 (609)
Q Consensus 451 ~~~~L~e~V~~v-----kPtvLIG~S~~~ 474 (609)
+..++.++++.+ ++|++|=+.+..
T Consensus 64 ~~~~~~~~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 64 SAEAVEALVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 223555666554 789999877653
No 336
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=51.58 E-value=25 Score=39.62 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||+++|||..|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 652111 2789999986
No 337
>PRK12829 short chain dehydrogenase; Provisional
Probab=50.67 E-value=52 Score=32.23 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+++.+++|.||. . ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~-g--~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGA-S--GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCC-C--cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 3788999999984 1 344455555443 363 58888763
No 338
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=50.62 E-value=19 Score=39.09 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=27.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
+-.+||+|||+||+..|..+.+ .| .++.|+|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988765 36 5799999864
No 339
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=50.62 E-value=87 Score=29.63 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=25.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 501 (609)
+-|++|++|..|. |+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG~--t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSGN--SKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 4699999999774 999998874 344455555444443
No 340
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=50.60 E-value=40 Score=35.78 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=28.9
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccC--CCcEEEecCCCCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSNPTS 502 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt~ 502 (609)
+-|++||+|..|. |+++++.+.... .-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999886 999999986433 3477776677763
No 341
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=50.34 E-value=20 Score=38.72 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=26.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi 430 (609)
+-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 34689999999999999988764 54 45666665443
No 342
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=50.30 E-value=15 Score=38.97 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.+|||+|+|.||+..|+.|... + ..-+|.+++...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988542 1 123677776543
No 343
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=50.29 E-value=46 Score=37.13 Aligned_cols=125 Identities=21% Similarity=0.259 Sum_probs=86.2
Q ss_pred ecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCc
Q 007301 356 NDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL 435 (609)
Q Consensus 356 NDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~ 435 (609)
.|.-.||+--++-|++ |.+..=|....+|+.|=|--|-|||..+.. .| -++++.+-
T Consensus 185 FDNrYGtgqS~~DgI~---RaTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ViVtEv--------- 240 (420)
T COG0499 185 FDNRYGTGQSLLDGIL---RATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------ARVIVTEV--------- 240 (420)
T ss_pred cccccccchhHHHHHH---hhhceeecCceEEEecccccchHHHHHhhc-----CC-------CeEEEEec---------
Confidence 3667899999999987 456678899999999999999999988743 25 24544332
Q ss_pred cCCchhcchhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC-CCCCCCHHH---
Q 007301 436 ESLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE--- 510 (609)
Q Consensus 436 ~~L~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~aEct~e~--- 510 (609)
+|.+.-=|. +.=..-++.||++. .|++|=++|.-++.+.|.++.|. +.-|+ .|-- -.-|+..+.
T Consensus 241 ---DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk---DgaIl---~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 241 ---DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK---DGAIL---ANAGHFDVEIDVAGLEE 309 (420)
T ss_pred ---CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc---CCeEE---ecccccceeccHHHHHH
Confidence 122111111 22233579999998 89999999999999999999996 34343 3322 235666554
Q ss_pred -Hhccc
Q 007301 511 -AYTWS 515 (609)
Q Consensus 511 -A~~wT 515 (609)
+.+|.
T Consensus 310 ~~~~~~ 315 (420)
T COG0499 310 LAVEKR 315 (420)
T ss_pred hhhhHh
Confidence 45553
No 344
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=50.25 E-value=84 Score=31.06 Aligned_cols=104 Identities=15% Similarity=0.158 Sum_probs=51.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHh
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 460 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 460 (609)
.++.||.|+|.|..+ -+|..+...|..+.++.. --.+++..+....+.. - .+-..+...|++ ...+.
T Consensus 42 ~~~~rI~i~G~G~S~-~~A~~~a~~l~~~~~~~r--~g~~~~~~~d~~~~~~-~-~~d~~~~~~~~~-------~~~~~- 108 (192)
T PRK00414 42 KAGGKVLSCGNGGSH-CDAMHFAEELTGRYRENR--PGYPAIAISDVSHLSC-V-SNDFGYDYVFSR-------YVEAV- 108 (192)
T ss_pred HCCCEEEEEeCcHHH-HHHHHHHHHhcccccCCC--CCceEEecCcHHHHhh-h-hccCCHHHHHHH-------HHHHh-
Confidence 467899999999987 566767655532112110 0112222211111100 0 000111112221 11111
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCC
Q 007301 461 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSN 499 (609)
Q Consensus 461 ~vkPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSN 499 (609)
.-+-|++|++|..|. |+++++.+. +...-|+|-=-+|
T Consensus 109 ~~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 109 GREGDVLLGISTSGN--SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 124699999999875 999999875 3334455543343
No 345
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=50.08 E-value=18 Score=38.55 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.3
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~ 404 (609)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999988865
No 346
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=50.07 E-value=22 Score=39.83 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~ 404 (609)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456799999999999999888765
No 347
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=50.05 E-value=22 Score=39.55 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=28.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
+.-+++|+|||.+|+++|..|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 456899999999999999888764 763 378888864
No 348
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=50.01 E-value=20 Score=41.58 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=27.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-.+.+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 357899999999999999988875 363 47778764
No 349
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=49.94 E-value=22 Score=39.42 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+.+|+|+|||.||+..|..+.. .| .++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 46799999999999999888764 35 368888875
No 350
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=49.86 E-value=75 Score=31.88 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=51.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhc----chhcc-ccCCCCCHHHH
Q 007301 385 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 458 (609)
Q Consensus 385 rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k----~~fA~-~~~~~~~L~e~ 458 (609)
||++.|| |..|..+++.+.+ .| .++.++|+. .....+.+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788875 7677777666654 25 346667642 111011111111 11111 22223467777
Q ss_pred HhccCCcEEEEccCCCCCC----------------CHHHHHHHHccCCCcEEEe
Q 007301 459 VNAIKPTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~F----------------t~evv~~Ma~~~erPIIFa 496 (609)
++..++|++|=+.+..... +..++++|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999665532111 2455677776655677773
No 351
>PRK06182 short chain dehydrogenase; Validated
Probab=49.85 E-value=45 Score=33.34 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=38.4
Q ss_pred CCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchh-ccccCCCCCHHHHH
Q 007301 382 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKELVDAV 459 (609)
Q Consensus 382 ~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~f-A~~~~~~~~L~e~V 459 (609)
+..+++|.|| |..|..+|+ .+.+ .| -++++++++- ++.+.+......+ .-|..+..++.+++
T Consensus 2 ~~k~vlItGasggiG~~la~----~l~~-~G-------~~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 2 QKKVALVTGASSGIGKATAR----RLAA-QG-------YTVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCEEEEECCCChHHHHHHH----HHHH-CC-------CEEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 4578999997 334444444 4433 36 3677776531 1100111111111 11222223555666
Q ss_pred hcc-----CCcEEEEccCCC
Q 007301 460 NAI-----KPTILIGTSGQG 474 (609)
Q Consensus 460 ~~v-----kPtvLIG~S~~~ 474 (609)
+.+ ++|+||=..+..
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 644 799999877654
No 352
>PRK07831 short chain dehydrogenase; Provisional
Probab=49.83 E-value=43 Score=33.13 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCCCCceEEEeCc-ch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 379 GSLADQRFLFLGA-GE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 379 ~~L~d~rivf~GA-Gs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
..+++.+++|.|| |+ .|..+|+.+++ .|. +++++|+
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~-----~G~-------~V~~~~~ 50 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALE-----EGA-------RVVISDI 50 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHH-----cCC-------EEEEEeC
Confidence 3456789999998 43 55555555543 364 3777775
No 353
>PLN02427 UDP-apiose/xylose synthase
Probab=49.79 E-value=60 Score=34.53 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=50.5
Q ss_pred HHHhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh-------cchh
Q 007301 374 MKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-------KKPW 445 (609)
Q Consensus 374 lr~~g~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~-------k~~f 445 (609)
+.+.|++++-.||+|.|| |-.|.-+++.|++. .| .+++.+|+.. .+...+.+. ...|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 457899999999999996 88888888777652 12 3577777531 110111110 1122
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCC
Q 007301 446 AH-EHEPVKELVDAVNAIKPTILIGTSGQ 473 (609)
Q Consensus 446 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~ 473 (609)
.+ +......+.++++. +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 22 11222457777875 8999987764
No 354
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=49.75 E-value=14 Score=34.41 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=20.4
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHH
Q 007301 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMA 486 (609)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma 486 (609)
+.+..+.-+-|+||+.|+.|+ |+-+|+++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 445533445799999999998 899998875
No 355
>PRK06475 salicylate hydroxylase; Provisional
Probab=49.69 E-value=19 Score=38.57 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~ 404 (609)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999998877654
No 356
>PRK13937 phosphoheptose isomerase; Provisional
Probab=49.60 E-value=54 Score=32.11 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=24.7
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 501 (609)
+-|++|++|..|. |+++++.+. +.+.-|+|.=-+||.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4699999999885 999998875 333344444333333
No 357
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=49.34 E-value=19 Score=38.01 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=24.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 363 688899763
No 358
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=49.25 E-value=19 Score=39.38 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
.+|++|=||++|||..|--++++|+.. |+ ++|.+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999864 75 78999987644
No 359
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=49.23 E-value=20 Score=39.28 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
-.++|+|||+||+..|..+... | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999998887653 5 5789999864
No 360
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=49.17 E-value=23 Score=34.89 Aligned_cols=79 Identities=18% Similarity=0.119 Sum_probs=40.5
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh---c-chhccccCCCCC
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---K-KPWAHEHEPVKE 454 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~---k-~~fA~~~~~~~~ 454 (609)
.+.+.+++|.|| |..|..||+.+ .+ .|. ++.++|++. .+.+.+... + ..+.-+..+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l----~~-~G~-------~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERY----LA-EGA-------RVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHH----HH-cCC-------EEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHH
Confidence 467889999997 33444444444 43 363 577887641 110111100 0 011112222235
Q ss_pred HHHHHhcc-----CCcEEEEccCCC
Q 007301 455 LVDAVNAI-----KPTILIGTSGQG 474 (609)
Q Consensus 455 L~e~V~~v-----kPtvLIG~S~~~ 474 (609)
+.++++.+ ++|+||=+.+..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 66666654 689999776643
No 361
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=49.02 E-value=19 Score=40.23 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..|++-+|+++|+|..|.-+++-|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999999875 86 799999986
No 362
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=48.91 E-value=16 Score=38.89 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=49.1
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccC----CCCC
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE----PVKE 454 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~----~~~~ 454 (609)
++|.+-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +| +..|-.+.+ ....
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL---~RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DV---CTNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hh---ccccccccccCCcHHHH
Confidence 568899999999999999999998875 76 79999998632 211 12 222222111 1124
Q ss_pred HHHHHhccCCcEEEE
Q 007301 455 LVDAVNAIKPTILIG 469 (609)
Q Consensus 455 L~e~V~~vkPtvLIG 469 (609)
..+-++.+.|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 566777788888773
No 363
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=48.83 E-value=51 Score=32.42 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=23.8
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 5555555555543 363 57777764
No 364
>PRK06841 short chain dehydrogenase; Provisional
Probab=48.65 E-value=39 Score=33.04 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++++.+++|.|| |..|..+|+.+ .+ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l----~~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELF----AA-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 477889999998 44454555554 33 363 57777764
No 365
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=48.60 E-value=58 Score=35.40 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHH
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~ 404 (609)
.|++.+|.|+|.|+.|.++|..|..
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999998865
No 366
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=48.31 E-value=28 Score=36.91 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=28.2
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHc--cCCCcEEEecCCCCC
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPTS 502 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma~--~~erPIIFaLSNPt~ 502 (609)
-+-|++||+|..|. |+++++++.. ...-|+|.=-+||.+
T Consensus 130 ~~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 130 TAKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 35799999999886 9999999853 333466665566663
No 367
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=48.24 E-value=1.2e+02 Score=33.14 Aligned_cols=131 Identities=12% Similarity=0.191 Sum_probs=82.1
Q ss_pred HHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeee-cCCcchHHHHHHHHHHHHHHhC-CCCCCceEEEeCcchHHHHHH
Q 007301 322 KQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN-DDIQGTASVVLAGLISAMKFLG-GSLADQRFLFLGAGEAGTGIA 399 (609)
Q Consensus 322 ~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN-DDiQGTaaV~LAgll~Alr~~g-~~L~d~rivf~GAGsAg~GIA 399 (609)
-.+| .++++ +-.+ .+-+.+.+.+| ..+||+| .|-..--.=+||=++.-.+..| +++++.+|.++|-+.- +++
T Consensus 97 ls~y-~D~Iv-~R~~-~~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~ 170 (336)
T PRK03515 97 LGRM-YDGIQ-YRGY-GQEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMG 170 (336)
T ss_pred HHHh-CcEEE-EEeC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHH
Confidence 3456 44444 3333 23344555555 4689999 3334455667888888777776 4799999999998632 477
Q ss_pred HHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-cC---CCCCHHHHHhccCCcEEEEcc
Q 007301 400 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HE---PVKELVDAVNAIKPTILIGTS 471 (609)
Q Consensus 400 ~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~~---~~~~L~e~V~~vkPtvLIG~S 471 (609)
+-++.++.+ .|+ ++.++-.+|+.-.. + +-..-+.+++. .. -..++.|+++. .||+.-.+
T Consensus 171 ~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 171 NSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred HHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecC
Confidence 777777665 474 68888888773321 1 11111233332 11 13689999997 99999764
No 368
>PLN02268 probable polyamine oxidase
Probab=48.14 E-value=9.2 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007301 385 RFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~ 404 (609)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999876
No 369
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=47.84 E-value=21 Score=39.70 Aligned_cols=25 Identities=36% Similarity=0.508 Sum_probs=20.0
Q ss_pred CCCC--ceEEEeCcchHHHHHHHHHHH
Q 007301 380 SLAD--QRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 380 ~L~d--~rivf~GAGsAg~GIA~li~~ 404 (609)
++++ -.|+|+|||.||...|..+..
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHHh
Confidence 3444 468999999999999987764
No 370
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=47.75 E-value=26 Score=42.90 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc----Cccc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIV 431 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~----GLi~ 431 (609)
-.+.||+|+|||.||+..|..|... |. ++.++|+. |++.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEE
Confidence 4579999999999999999988753 63 57788875 6554
No 371
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=47.51 E-value=26 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.1
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 388 f~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
|+|||.+|+..|-.|.+. | .++.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999888653 4 58999998643
No 372
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=47.10 E-value=97 Score=30.67 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=40.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcch-hccccCCCCCHHHH
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-WAHEHEPVKELVDA 458 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~-fA~~~~~~~~L~e~ 458 (609)
.|++.+++|.||+. ||...++..+.+ .| -+++++|++.- .+...+.. +.-+..+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIHGG-------DGQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCcc-------ccccCceEEEEccCCCHHHHHHH
Confidence 47788999999753 555556665554 46 36777776421 11111111 11122222345555
Q ss_pred Hhcc-----CCcEEEEccCC
Q 007301 459 VNAI-----KPTILIGTSGQ 473 (609)
Q Consensus 459 V~~v-----kPtvLIG~S~~ 473 (609)
++.+ ++|+||=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999977664
No 373
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=47.04 E-value=45 Score=34.39 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=49.6
Q ss_pred CceEEEeCcchHHHHHHHH-HHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhc
Q 007301 383 DQRFLFLGAGEAGTGIAEL-IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~l-i~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (609)
..||.|+|+| +++.. .+.++.+..+. ..-+.++|++ . +......+.|--. .-..+++|.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4689999998 34432 33333321110 1234455553 1 1122222222211 235789999999
Q ss_pred cCCcEEEEccCCCCCCCHHHHHH-HHc----cCCCcEEE
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEA-MAS----LNEKPIIF 495 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~-Ma~----~~erPIIF 495 (609)
-++|+++ ..++. .+..|++.+ +.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7778877 44433 466666543 432 57888754
No 374
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=47.04 E-value=1.4e+02 Score=30.93 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=28.8
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 454 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
++.+..+. .|++|-.|... .|.--++|+|+ +..|||.
T Consensus 265 ~~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 265 DVPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred CHHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 35566665 78999877654 58999999999 6789987
No 375
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=46.90 E-value=94 Score=29.47 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=27.7
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcC
Q 007301 361 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 419 (609)
Q Consensus 361 GTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~ 419 (609)
|.-.+.-+|++.+|.-.|.++. +|.|.. ||-=+|-+++ .|.+.+|..+
T Consensus 9 G~rG~~~~Gvl~~L~~~~~~~d----~i~GtS-aGal~a~~~a------~g~~~~~~~~ 56 (175)
T cd07205 9 GARGLAHIGVLKALEEAGIPID----IVSGTS-AGAIVGALYA------AGYSPEEIEE 56 (175)
T ss_pred hHHHHHHHHHHHHHHHcCCCee----EEEEEC-HHHHHHHHHH------cCCCHHHHHH
Confidence 3345567899999988776432 566664 4433333332 2666666543
No 376
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=46.79 E-value=16 Score=39.73 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=25.7
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..+..||||+|+|.||+..|+.|. + . .-+|.|+|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 355679999999999998876552 1 1 1358888764
No 377
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=46.78 E-value=60 Score=33.94 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc-ccCCCCCHHHH
Q 007301 381 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 458 (609)
Q Consensus 381 L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~e~ 458 (609)
+++.+++|.|| |..|..+++.+++. |- ..+++++|++..-...-...+...+..|.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 66777777766542 31 136888876421100000001111111211 22223457777
Q ss_pred HhccCCcEEEEccCCCCC----C------------CHHHHHHHHccCCCcEEEecC
Q 007301 459 VNAIKPTILIGTSGQGRT----F------------TKEVVEAMASLNEKPIIFSLS 498 (609)
Q Consensus 459 V~~vkPtvLIG~S~~~g~----F------------t~evv~~Ma~~~erPIIFaLS 498 (609)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977664321 1 235666766655567888544
No 378
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=46.60 E-value=24 Score=34.91 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=24.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.|+|+|||.||+..|-.+.+ .|+ ++.++|+.-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 48999999999999877643 364 577777764
No 379
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=46.55 E-value=36 Score=37.74 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=36.8
Q ss_pred HHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEc
Q 007301 346 EKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 425 (609)
Q Consensus 346 ~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvD 425 (609)
++|-.....+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 456667789999888888 256778999999833 344444444443 353 566676
Q ss_pred cc
Q 007301 426 SK 427 (609)
Q Consensus 426 s~ 427 (609)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 54
No 380
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.48 E-value=27 Score=36.73 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+..+|+|+|||.||...|-+|...- +.|+ ++.++|++
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 3457999999999999888876520 0154 57777763
No 381
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=46.41 E-value=1.1e+02 Score=31.49 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=52.5
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhcc
Q 007301 384 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (609)
Q Consensus 384 ~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (609)
.||.++|+ |..|-.+++.+... .++ +=..++|++. ++.... ..+ +.....++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 38999999 99998888766432 232 3455677642 111101 111 1122367888876
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 496 (609)
+||++|=+|.+. ...++++...+. ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888543 236666655543 5778765
No 382
>PRK09186 flagellin modification protein A; Provisional
Probab=46.36 E-value=30 Score=33.82 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=21.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+++.+++|.||+. ||...++..+.+ .|. ++.+++++
T Consensus 2 ~~~k~vlItGas~---giG~~~a~~l~~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGG---LIGSALVKAILE-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCc---hHHHHHHHHHHH-CCC-------EEEEEecC
Confidence 4678999999843 344444444433 363 46666653
No 383
>PRK06753 hypothetical protein; Provisional
Probab=46.31 E-value=24 Score=36.90 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.5
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007301 385 RFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~ 404 (609)
+|+|+|||.||+..|-.|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888765
No 384
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=46.27 E-value=68 Score=32.99 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=25.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.||.|+|.|..|..+|..+.. .| .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AG-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 479999999999999998865 25 256777764
No 385
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=46.27 E-value=1.8e+02 Score=29.21 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=28.3
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 454 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
++.+..+. .|++|..|... .|.--++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 35566666 88999888754 48889999999 4779985
No 386
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.15 E-value=85 Score=35.05 Aligned_cols=107 Identities=16% Similarity=0.135 Sum_probs=57.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (609)
.++||+|+|.|-.|.++|++|.. | -++++.|.+-. .+ +.+...+..+..... + .+.+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~------g-------~~v~v~D~~~~---~~-~~~~~~~~~~~~~~~---~-~~~~~- 62 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN------K-------YDVIVYDDLKA---NR-DIFEELYSKNAIAAL---S-DSRWQ- 62 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC------C-------CEEEEECCCCC---ch-HHHHhhhcCceeccC---C-hhHhh-
Confidence 35799999999999999999851 5 35888885421 11 111111011111100 1 12233
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhcccc-CcEEEecCC
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASGS 525 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~-GraifASGS 525 (609)
++|.+|=.++.+ .=++++.++.. ...||+ + ..|-++.+.+ .+.|-.|||
T Consensus 63 -~~d~vV~SPgI~-~~~p~~~~a~~--~gi~v~-------~----e~el~~~~~~~~~~IaVTGT 112 (454)
T PRK01368 63 -NLDKIVLSPGIP-LTHEIVKIAKN--FNIPIT-------S----DIDLLFEKSKNLKFIAITGT 112 (454)
T ss_pred -CCCEEEECCCCC-CCCHHHHHHHH--CCCcee-------c----HHHHHHHHhcCCCEEEEECC
Confidence 378777555665 23555555543 346665 1 1334555553 357777886
No 387
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=46.15 E-value=89 Score=32.42 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc-cCCCccCCch------hcchhcc-cc
Q 007301 379 GSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI-VSSRLESLQH------FKKPWAH-EH 449 (609)
Q Consensus 379 ~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi-~~~R~~~L~~------~k~~fA~-~~ 449 (609)
.+++..+++|.|| |-.|..+++.|+. .|. +++++|+..-- ...+...+.. .+..|.. +.
T Consensus 2 ~~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl 69 (340)
T PLN02653 2 GDPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDL 69 (340)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecC
Confidence 3567789999997 7788888777765 263 57777653210 0000001100 0111221 22
Q ss_pred CCCCCHHHHHhccCCcEEEEccCC
Q 007301 450 EPVKELVDAVNAIKPTILIGTSGQ 473 (609)
Q Consensus 450 ~~~~~L~e~V~~vkPtvLIG~S~~ 473 (609)
.+..++.++++..+||++|=+.+.
T Consensus 70 ~d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 70 SDASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CCHHHHHHHHHHcCCCEEEECCcc
Confidence 233467788888899999988775
No 388
>PRK07045 putative monooxygenase; Reviewed
Probab=45.98 E-value=25 Score=37.23 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~ 404 (609)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999987765
No 389
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=45.95 E-value=26 Score=36.62 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 35699999999999999777653 5 4688898764
No 390
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.91 E-value=97 Score=34.00 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=60.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh--cchhccccCCCCCHHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAHEHEPVKELVDAV 459 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~--k~~fA~~~~~~~~L~e~V 459 (609)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++... .-+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~~---~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRCG---GFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEeC---CCC-hHHh
Confidence 57789999999999998888765 363 5778886420 0000112110 1111100 011 2334
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCC
Q 007301 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 525 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGS 525 (609)
+ ++|.+|=.++.+ --++++.++.. ...||+ +.+|. ++...+.+.|-.|||
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el----~~~~~~~~~I~VTGT 116 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIEL----FAREAKAPVIAITGS 116 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHHhcCCCEEEEECC
Confidence 3 478887666665 34677777654 356776 22333 222235677888886
No 391
>PRK08507 prephenate dehydrogenase; Validated
Probab=45.84 E-value=77 Score=32.48 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=25.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
||.|+|+|..|..+|..+... |. ..++|.+|++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-----g~-----~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-----GL-----ISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-----CC-----CCEEEEEcCC
Confidence 799999999999999888653 54 2468888863
No 392
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=45.81 E-value=75 Score=35.67 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCceeeee-cCCCCcHHHHHHHHcC----CCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEE
Q 007301 314 LHEFMTAVKQNYGERILIQFE-DFANHNAFDLLEKYGT----THLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLF 388 (609)
Q Consensus 314 idEfv~Av~~~fGp~~lIqfE-Df~~~nAf~lL~ryr~----~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf 388 (609)
..++.+.++++||--.+ .+. =++-.+.-+.|++..+ ..+ +.++.-= +-++.++.-...-|...|+.+
T Consensus 245 ~~~~a~~Lee~~GiP~~-~~~~p~G~~~t~~~l~~l~~~~g~~~~---~~i~~er----~~~~~~~~d~~~~l~gkrvai 316 (455)
T PRK14476 245 MRKAAEALEARTGVPYL-VFPSLTGLEAVDRFIATLAQISGRPVP---AKYRRQR----AQLQDAMLDGHFYFGGKRVAI 316 (455)
T ss_pred HHHHHHHHHHHhCCCeE-ecCCCcChHHHHHHHHHHHHHHCCCCc---HHHHHHH----HHHHHHHHHHHHHhcCCEEEE
Confidence 34677788888874322 221 1444455555555432 111 1111111 112333333334466899999
Q ss_pred eCcchHHHHHHHHHHH
Q 007301 389 LGAGEAGTGIAELIAL 404 (609)
Q Consensus 389 ~GAGsAg~GIA~li~~ 404 (609)
.|-+.-..|+++.|.+
T Consensus 317 ~~~~~~~~~la~~L~e 332 (455)
T PRK14476 317 AAEPDLLLALGSFLAE 332 (455)
T ss_pred EeCHHHHHHHHHHHHH
Confidence 9988999999998875
No 393
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=45.79 E-value=61 Score=31.81 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=26.4
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 378 g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..++++.+++|.||+. ||...++..+.+ .|. +++++|++
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568889999999732 455555555544 463 68888875
No 394
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=45.77 E-value=30 Score=36.08 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=24.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 45689999999999999887764 64 688888763
No 395
>PLN02676 polyamine oxidase
Probab=45.64 E-value=56 Score=36.77 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~ 405 (609)
...+++|+|||.+|+..|..+.+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc
Confidence 355799999999999999888763
No 396
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=45.61 E-value=27 Score=37.44 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=25.8
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
...|+|+|||.||+-.|-.|.. .|+ ++-++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 4579999999999988877765 374 57777775
No 397
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=45.49 E-value=25 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.++|+|||.||+.+|..+.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988764 25 468888874
No 398
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=45.46 E-value=60 Score=31.64 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=88.2
Q ss_pred hhcCCCccccccCCcchHHHHHhcCCCCCceEEEEecC--cccccCCCCCCC--ccccchhhhhHHhhhCCCCCCceeeE
Q 007301 205 IYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDG--ERILGLGDLGCH--GMGIPVGKLSLYTALGGIRPSACLPV 280 (609)
Q Consensus 205 i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LYta~gGI~P~~~LPI 280 (609)
+-+++.|+-++.-|.....+.++.+-..+|.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46679999999999988888898888888988887555 222222233433 36677777777666654 445
Q ss_pred EeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHHhcCCCceee---eecCCCCcHHHHHHHHcCCC---ee
Q 007301 281 TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQ---FEDFANHNAFDLLEKYGTTH---LV 354 (609)
Q Consensus 281 ~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~~fGp~~lIq---fEDf~~~nAf~lL~ryr~~~---~~ 354 (609)
++=.|..+ .....+.++-|.+++++ ++.-.++. +.++....+.+.++++-..+ .+
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i 186 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANPVDAI 186 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEEE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCCceEE
Confidence 54444321 22333557778888888 64222222 23677777776655553222 33
Q ss_pred eecCCcchHHHHHHHHHHHHHHhCC
Q 007301 355 FNDDIQGTASVVLAGLISAMKFLGG 379 (609)
Q Consensus 355 FNDDiQGTaaV~LAgll~Alr~~g~ 379 (609)
|.- ....+-|++.|++..|+
T Consensus 187 ~~~-----~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 187 IAC-----NDGMALGAAQALQQAGR 206 (257)
T ss_dssp EES-----SHHHHHHHHHHHHHTTC
T ss_pred EeC-----CChHHHHHHHHHHHcCC
Confidence 322 23344477888888887
No 399
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=45.18 E-value=67 Score=32.88 Aligned_cols=105 Identities=21% Similarity=0.220 Sum_probs=56.3
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCcc--CCchhcchhcc-c----cCCCCC
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE--SLQHFKKPWAH-E----HEPVKE 454 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~--~L~~~k~~fA~-~----~~~~~~ 454 (609)
.+-||.|+|+|.-|..++.-|... |.- ..+++|.+|++- .+.. ...+.+..... + .-+...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~D~Vilavkp~~ 69 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPSK----KNTPFVYLQSNEELAKTCDIIVLAVKPDL 69 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCCh----hcCCeEEeCChHHHHHhCCEEEEEeCHHH
Confidence 456899999999999999888753 321 124688888632 1100 00010000000 0 001123
Q ss_pred HHHHHhccCC---cEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007301 455 LVDAVNAIKP---TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 455 L~e~V~~vkP---tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
+.++++.++| +-+| +|-..| ++.+.++.+- ...++++-.+.|..
T Consensus 70 ~~~vl~~i~~~l~~~~i-IS~~aG-i~~~~l~~~~-~~~~~vvr~mPn~p 116 (260)
T PTZ00431 70 AGKVLLEIKPYLGSKLL-ISICGG-LNLKTLEEMV-GVEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHhhccCCEE-EEEeCC-ccHHHHHHHc-CCCCeEEEECCCch
Confidence 4444444443 2233 565554 5788888764 23456888888865
No 400
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=45.07 E-value=25 Score=38.57 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++|+|||+||+..|..+.+ .| +++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999887765 36 578899975
No 401
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=45.03 E-value=24 Score=39.67 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
-.|||+|+|.+|++||..+... |+ ++.|+|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999887653 75 588888863
No 402
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=44.77 E-value=24 Score=37.05 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=24.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999877654 364 57777765
No 403
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=44.74 E-value=50 Score=36.03 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=26.4
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHH
Q 007301 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 371 l~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~ 404 (609)
..++......|...|++++|-+.-..++++.+.+
T Consensus 264 ~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~e 297 (396)
T cd01979 264 WRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTR 297 (396)
T ss_pred HHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHH
Confidence 4444455566778899999998888999998876
No 404
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=44.70 E-value=24 Score=38.61 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~ 404 (609)
-.|+|+|||.||...|-.+.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 479999999999999988764
No 405
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=44.67 E-value=29 Score=35.88 Aligned_cols=31 Identities=42% Similarity=0.807 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
.+|.|+|+|..|.+||..++.. | .+++++|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeC
Confidence 5799999999999999998764 5 36778875
No 406
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=44.49 E-value=33 Score=36.56 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=28.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|+..
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEccc
Confidence 456799999999999999887653 253 4788898764
No 407
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=44.41 E-value=29 Score=38.19 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=27.2
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 345799999999999988887754 25 368888875
No 408
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=44.37 E-value=46 Score=34.66 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
.||.|+|+|..|-.+|.-|.. .|.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 379999999999999888864 2531 2346888885
No 409
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=44.36 E-value=24 Score=41.07 Aligned_cols=44 Identities=20% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc-CcccCCCcc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLE 436 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~-GLi~~~R~~ 436 (609)
++..|+|+|||.||+..|-.|... .|+ ++.++|++ +....+|.+
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~~~~~~~grA~ 75 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERKPGRLELGQAD 75 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcCCCCCCCCeee
Confidence 456899999999999988887652 265 46778876 333334433
No 410
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=44.24 E-value=45 Score=36.65 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=57.6
Q ss_pred eEEEeCcchHHHH-HHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccC
Q 007301 385 RFLFLGAGEAGTG-IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (609)
Q Consensus 385 rivf~GAGsAg~G-IA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (609)
+|.|+|.|-+|++ +|++|.. .|. ++...|.+--- ..+.|......+- .. .+ .+.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~-~~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HS-AENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CC-HHHCC--C
Confidence 5899999999998 8888765 373 57788864211 1111211111111 00 11 12333 3
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccc-cCcEEEecCC
Q 007301 464 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGS 525 (609)
Q Consensus 464 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT-~GraifASGS 525 (609)
+|.+|=.++.+ --++++.++.. ...||+ +.+|. ++.+. +.+.|-.|||
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT 107 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT 107 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC
Confidence 78888666665 35677777665 345665 33333 22332 3467777886
No 411
>PLN02463 lycopene beta cyclase
Probab=44.21 E-value=25 Score=39.25 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=24.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999977754 364 46666663
No 412
>PRK08219 short chain dehydrogenase; Provisional
Probab=44.15 E-value=93 Score=29.60 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=16.0
Q ss_pred CCHHHHHhcc-CCcEEEEccCCC
Q 007301 453 KELVDAVNAI-KPTILIGTSGQG 474 (609)
Q Consensus 453 ~~L~e~V~~v-kPtvLIG~S~~~ 474 (609)
.++.++++.+ ++|++|-+.+..
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 60 EAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 4566777655 689999888764
No 413
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=44.15 E-value=28 Score=36.45 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999987764 25 36888888654
No 414
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=44.08 E-value=35 Score=36.07 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-..++|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345799999999999998887764 25 468888875
No 415
>PRK07478 short chain dehydrogenase; Provisional
Probab=44.06 E-value=62 Score=31.78 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=23.0
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+++.+++|.||+. ||...++..+.+ .|. +++++++.
T Consensus 3 ~~~~k~~lItGas~---giG~~ia~~l~~-~G~-------~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASS---GIGRAAAKLFAR-EGA-------KVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 46778999999853 333444444444 363 58887764
No 416
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=44.04 E-value=28 Score=35.94 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi 430 (609)
.+-.++|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999877654 35 468888887443
No 417
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.04 E-value=98 Score=34.03 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCC-ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHH
Q 007301 381 LAD-QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 459 (609)
Q Consensus 381 L~d-~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 459 (609)
+.. +||+|+|.|-.|++.+.+|... .| .-++...|.+=. ....+.|.. ...+...+ -+. +.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~~-~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WNL-EWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CCh-HHh
Confidence 344 6899999999999999998753 22 125777886421 000011211 11111110 011 233
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeec
Q 007301 460 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 537 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~ 537 (609)
. ++|.+|=.++.+ --++++.++.. ..-||+ +.+|. ++.+.+.+.|-.||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777555665 34677766654 346664 33333 333445678888997 67654
No 418
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=44.02 E-value=30 Score=36.86 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=24.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 3579999999999999876654 365 56677754
No 419
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=43.79 E-value=1.3e+02 Score=31.61 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=50.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhcc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 462 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 462 (609)
.+||.|+|.|+.+. +|+.+...|.+ .| ++.++++..... ... + ..+ -
T Consensus 47 ~~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~---------~~~---~------~~~------~ 93 (326)
T PRK10892 47 KGKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAA---------HGD---L------GMV------T 93 (326)
T ss_pred CCeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhh---------ccc---c------ccC------C
Confidence 36899999997775 77777666654 34 344443321100 000 0 011 1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 501 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSNPt 501 (609)
+.|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 94 ~~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 94 PQDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 4689999998886 899999875 444557766555554
No 420
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=43.56 E-value=42 Score=35.91 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=50.9
Q ss_pred cCCcchHHHHHHHHHHH-HHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCc
Q 007301 357 DDIQGTASVVLAGLISA-MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL 435 (609)
Q Consensus 357 DDiQGTaaV~LAgll~A-lr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~ 435 (609)
|+..+.-+=-+|--+.+ ....+.+..+ +++++|||+.|+..+.+. +..|. ++|+++|.. .+|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a-----~~~Ga------~~Viv~d~~----~~R- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALA-----KLLGA------SVVIVVDRS----PER- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHH-----HHcCC------ceEEEeCCC----HHH-
Confidence 33444444444444444 2223333333 999999999997663222 22464 789998873 222
Q ss_pred cCCchhcchhccc--cCCCC-CHHHHH----hccCCcEEEEccC
Q 007301 436 ESLQHFKKPWAHE--HEPVK-ELVDAV----NAIKPTILIGTSG 472 (609)
Q Consensus 436 ~~L~~~k~~fA~~--~~~~~-~L~e~V----~~vkPtvLIG~S~ 472 (609)
|+..++.++-+ ..... ...+.+ .....|+.|=+|+
T Consensus 206 --l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 --LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred --HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 43333323322 11111 233333 2236899999998
No 421
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=43.55 E-value=33 Score=40.56 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+-.+.+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 34678999999999999999888653 6 368888874
No 422
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=43.48 E-value=18 Score=32.04 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=26.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
+|++.++|++|+|..|.-=+++++++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999998887777653 4 4677777753
No 423
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.34 E-value=1e+02 Score=33.64 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=61.6
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 461 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 461 (609)
+.++|+|+|.|-.|..+|+.+.+ .|. +++..|.+- . .+.. ..+..+. ......+..+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~- 58 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE- 58 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc-
Confidence 34789999999998887777653 363 588888641 1 1211 1111100 0011222223
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCCCCCCHHHHhccccCcEEEecCCCCCccccCCeec
Q 007301 462 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 537 (609)
Q Consensus 462 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aEct~e~A~~wT~GraifASGSPF~pv~~~G~~~ 537 (609)
+++++|=..+.+ .-.+.+.++..+. -||| +++ |. +-++..+.+.+.|-.||| +|||-
T Consensus 59 -~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~----~~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 -QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDI----QL-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred -CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHH----HH-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378899887776 4566666666543 3432 332 11 112112224567888997 67654
No 424
>PRK06392 homoserine dehydrogenase; Provisional
Probab=43.33 E-value=83 Score=34.00 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=48.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-HhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc----cCCCC--CHHH
Q 007301 385 RFLFLGAGEAGTGIAELIALEIS-KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVK--ELVD 457 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~-~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~--~L~e 457 (609)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+.+.|++|-+...++=++.+... +... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIIS-YKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHH-HHhcCccccCCCCcCCHHH
Confidence 79999999999999999876210 112321 12255679999888765312222110 1110 01112 5666
Q ss_pred HHhccCCcEEEEccC
Q 007301 458 AVNAIKPTILIGTSG 472 (609)
Q Consensus 458 ~V~~vkPtvLIG~S~ 472 (609)
.++ .+|||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 655 68999999884
No 425
>PRK14694 putative mercuric reductase; Provisional
Probab=43.30 E-value=31 Score=38.03 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.4
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+-.++|+|||+||+..|..+.+. | .++-++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888763 5 478899974
No 426
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=43.26 E-value=4.8e+02 Score=28.52 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeee--cCCcchHHHHHHHHHHHHHHh---CCCCCCceEEE
Q 007301 314 LHEFMTAVKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN--DDIQGTASVVLAGLISAMKFL---GGSLADQRFLF 388 (609)
Q Consensus 314 idEfv~Av~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN--DDiQGTaaV~LAgll~Alr~~---g~~L~d~rivf 388 (609)
+.+.+.. -.+| .++++ +--+... ...-+.+| .++||.| |+..--=.=+||=++.-.... |+++++.||++
T Consensus 90 l~Dtarv-ls~y-~D~Iv-iR~~~~~-~~~~~a~~-~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~ 164 (338)
T PRK08192 90 LYDTARV-LSTY-SDVIA-MRHPDAG-SVKEFAEG-SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAM 164 (338)
T ss_pred HHHHHHH-HHHc-CCEEE-EeCCchh-HHHHHHHh-CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEE
Confidence 4445443 4456 44433 3333322 33334444 3689999 433333344566666654443 56899999999
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc----cCCCCCHHHHHhccCC
Q 007301 389 LGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVDAVNAIKP 464 (609)
Q Consensus 389 ~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e~V~~vkP 464 (609)
+|.+.=+ -++.-++..+....|+ +|+++-.+|+-- ++.-...++. -....++.|+++. .
T Consensus 165 vGD~~~~-rv~~Sl~~~l~~~~g~-------~v~~~~P~~~~~-------~~~~~~~~~~~g~~~~~~~d~~ea~~~--a 227 (338)
T PRK08192 165 VGDLKFG-RTVHSLSRLLCMYKNV-------SFTLVSPKELAM-------PDYVISDIENAGHKITITDQLEGNLDK--A 227 (338)
T ss_pred ECcCCCC-chHHHHHHHHHHhcCC-------EEEEECCccccC-------CHHHHHHHHHcCCeEEEEcCHHHHHcc--C
Confidence 9997311 2233333332222354 688888887631 1111111221 1123689999997 9
Q ss_pred cEEEEccCCCCCC
Q 007301 465 TILIGTSGQGRTF 477 (609)
Q Consensus 465 tvLIG~S~~~g~F 477 (609)
||+.-.+.+..-|
T Consensus 228 Dvvyt~~~q~e~~ 240 (338)
T PRK08192 228 DILYLTRIQEERF 240 (338)
T ss_pred CEEEEcCcccccc
Confidence 9999887654334
No 427
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=43.26 E-value=29 Score=38.23 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=26.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 35799999999999998887653 6 579999974
No 428
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=43.23 E-value=30 Score=37.74 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=26.4
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999877653 5 578889983
No 429
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=43.13 E-value=27 Score=38.66 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=56.9
Q ss_pred HHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc----
Q 007301 372 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---- 447 (609)
Q Consensus 372 ~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~---- 447 (609)
.++.-....|+..|++++|-..-.+++++.+.+ .|+.. .. +++....+...+.-+.+..
T Consensus 292 ~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~------~~~~~~~~~~~~~~~~~l~~~~~ 354 (435)
T cd01974 292 DAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VH------VLTGNGGKRFEKEMQALLDASPY 354 (435)
T ss_pred HHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCHHHHHHHHHHHhhcCC
Confidence 334444456788999999988888999988874 38732 11 1111111111110111111
Q ss_pred -------ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007301 448 -------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 448 -------~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
...+...+.+.++..+||++||-|. . +.+++...-|.| ..+.|.
T Consensus 355 ~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~-----~----~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 355 GAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY-----G----KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCcEEEECCCHHHHHHHHhhcCCCEEEECcc-----H----HHHHHHhCCCEE-EeeCCc
Confidence 1122346788889999999999774 1 234433355653 455554
No 430
>PRK12831 putative oxidoreductase; Provisional
Probab=43.10 E-value=30 Score=38.48 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
...+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 567999999999999999888763 5 357778763
No 431
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=42.95 E-value=3.2e+02 Score=34.87 Aligned_cols=118 Identities=16% Similarity=0.267 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCceeeeecCCCC-------cHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEe
Q 007301 317 FMTAVKQNYGERILIQFEDFANH-------NAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFL 389 (609)
Q Consensus 317 fv~Av~~~fGp~~lIqfEDf~~~-------nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~ 389 (609)
.+++.-+.|....+|+ |++.. .-+++..+|.-.+++.+=|-+|.+.-.- .|
T Consensus 427 v~eaaLk~~~G~~IIN--sIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~e----------------~r---- 484 (1178)
T TIGR02082 427 VLEAGLKCIQGKCIVN--SISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTAD----------------RK---- 484 (1178)
T ss_pred HHHHHHHhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCHH----------------HH----
Confidence 4444445554455555 44442 3566777777777776666566443110 01
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhcc-----CC
Q 007301 390 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI-----KP 464 (609)
Q Consensus 390 GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v-----kP 464 (609)
+-||+.++..+.++.|++. ++|| +|. |..+-+-+ .+ .+..++. . -.|+++.+ ..
T Consensus 485 ------~~i~~~~~~~~~~~~Gi~~----edIi-~DP-~i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~pg~ 543 (1178)
T TIGR02082 485 ------IEICKRAYNILTEKVGFPP----EDII-FDP-NILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEELPDA 543 (1178)
T ss_pred ------HHHHHHHHHHHHHHcCCCH----HHEE-EeC-CccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhCCCC
Confidence 2388988888775579963 4555 777 22221111 11 1112221 2 33667776 45
Q ss_pred cEEEEccCCCCCC
Q 007301 465 TILIGTSGQGRTF 477 (609)
Q Consensus 465 tvLIG~S~~~g~F 477 (609)
-+++|+|...=-|
T Consensus 544 ~~~~GlSN~SFgl 556 (1178)
T TIGR02082 544 KISGGVSNVSFSF 556 (1178)
T ss_pred ceEEEecccccCC
Confidence 6999999876445
No 432
>PRK14852 hypothetical protein; Provisional
Probab=42.91 E-value=23 Score=43.60 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+|++.||+|+|+|..|.-||+.|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 478999999999999888888888764 86 899999986
No 433
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=42.87 E-value=29 Score=42.98 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=28.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-..+||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4568999999999999999988653 63 57777764
No 434
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=42.87 E-value=35 Score=33.85 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.9
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+++.+++|.||.+ ||...++..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlVtGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (263)
T PRK06200 3 WLHGQVALITGGGS---GIGRALVERFLA-EGA-------RVAVLERS 39 (263)
T ss_pred CCCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 36778999999853 444445555544 363 58888764
No 435
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=42.74 E-value=3.1e+02 Score=32.69 Aligned_cols=108 Identities=14% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCC--------CCCCHHHHhccccCcEEEecCCCCC
Q 007301 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSPFD 528 (609)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------aEct~e~A~~wT~GraifASGSPF~ 528 (609)
+.=+.++|+++|..++.. +.-.-+.....+-+|=|.+=.-||... .+-|-+++..+... |+..-=..
T Consensus 410 ~le~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~---~~~~~gk~ 484 (708)
T PRK11154 410 EVEQNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVA---LAKKQGKT 484 (708)
T ss_pred HHHhhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHH---HHHHcCCc
Confidence 333557899999877643 444444333345556688888998752 23343343333110 11111134
Q ss_pred ccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007301 529 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 573 (609)
Q Consensus 529 pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~ 573 (609)
||.+ ...||..=|-..+|-+--++.+...- ++.+-+-.|.+
T Consensus 485 pv~v---~d~pGfi~nRl~~~~~~EA~~lv~eG-v~~~dID~a~~ 525 (708)
T PRK11154 485 PIVV---RDGAGFYVNRILAPYINEAARLLLEG-EPIEHIDAALV 525 (708)
T ss_pred eEEE---eccCcHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 5544 24677777888888776666555532 45555555543
No 436
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=42.72 E-value=24 Score=36.96 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.7
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 007301 386 FLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~ 405 (609)
|+|+|||.||+..|-.|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999888763
No 437
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=42.68 E-value=29 Score=38.16 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999888765 36 579999975
No 438
>PRK08244 hypothetical protein; Provisional
Probab=42.59 E-value=29 Score=38.34 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~ 404 (609)
..|+|+|||.+|+..|-.|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 569999999999999988765
No 439
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=42.50 E-value=29 Score=37.84 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
.++|+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999887653 5 47889998
No 440
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=42.46 E-value=27 Score=37.05 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=25.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~ 38 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGR 38 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCC
Confidence 4579999999999999977654 364 47788875
No 441
>PRK08013 oxidoreductase; Provisional
Probab=42.32 E-value=30 Score=37.06 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=24.6
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+-.|+|+|||.||+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 4579999999999999876654 365 46666654
No 442
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=42.29 E-value=1.2e+02 Score=27.20 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCC
Q 007301 463 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSN 499 (609)
Q Consensus 463 kPtvLIG~S~~~g~Ft~evv~~Ma--~~~erPIIFaLSN 499 (609)
+.|++|++|-.|. |+|+++.+. +...-||| ++++
T Consensus 43 ~~dl~I~iS~SG~--t~e~i~~~~~a~~~g~~iI-~IT~ 78 (119)
T cd05017 43 RKTLVIAVSYSGN--TEETLSAVEQAKERGAKIV-AITS 78 (119)
T ss_pred CCCEEEEEECCCC--CHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4689999998875 999999864 33334555 4554
No 443
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=42.05 E-value=40 Score=39.33 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc-----------
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----------- 447 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~----------- 447 (609)
-+.+++|++-|| ||.|-.++++|++. + .++|.++|.+=. ++....+.+.+
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~i 308 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYI 308 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEe
Confidence 367899999987 58888888888764 3 388999987411 12222222222
Q ss_pred -ccCCCCCHHHHHhccCCcEEEEccC
Q 007301 448 -EHEPVKELVDAVNAIKPTILIGTSG 472 (609)
Q Consensus 448 -~~~~~~~L~e~V~~vkPtvLIG~S~ 472 (609)
+-.+...+.++++..|||+++=..+
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhh
Confidence 1223346899999999999997765
No 444
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=42.05 E-value=3.5e+02 Score=32.26 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=65.4
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCC--------CCCCHHHHhccccCcEEEecCCC
Q 007301 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ--------SECTAEEAYTWSQGRAIFASGSP 526 (609)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~--------aEct~e~A~~wT~GraifASGSP 526 (609)
+.++-+.++|+++|..++.+ +.-.-+..-.++-+|=|.+=.-||... .+-|.++++++... |+..-=
T Consensus 403 ~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~~g 477 (699)
T TIGR02440 403 VKDIEQECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVA---LAKKQG 477 (699)
T ss_pred HHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHH---HHHHcC
Confidence 33444567899999877753 343333333356667788888898742 34455666555321 211122
Q ss_pred CCccccCCeecCCCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007301 527 FDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 573 (609)
Q Consensus 527 F~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~s~a~~Itd~M~laAA~ 573 (609)
..||.++ ..||-.=|-.++|-+--++.+..-- ++.+-+-.|.+
T Consensus 478 k~pv~v~---d~pGfi~nRl~~~~~~Ea~~l~~~G-~~~~dID~a~~ 520 (699)
T TIGR02440 478 KTPIVVA---DKAGFYVNRILAPYMNEAARLLLEG-EPVEHIDKALV 520 (699)
T ss_pred CeEEEEc---cccchHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 4556553 4688888888888776666555433 46666666653
No 445
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=42.01 E-value=33 Score=39.95 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=26.7
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
...+|+|+|||.||+..|..+... | .++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G-------~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----G-------HDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEecC
Confidence 457999999999999999888652 5 357777764
No 446
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=42.00 E-value=31 Score=37.55 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
-.+||+|+|.||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4799999999999999888653 5 568999975
No 447
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=41.98 E-value=1.1e+02 Score=33.26 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=58.7
Q ss_pred HhCCCCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCC--CccCCch-h-cchhcc-cc
Q 007301 376 FLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS--RLESLQH-F-KKPWAH-EH 449 (609)
Q Consensus 376 ~~g~~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~--R~~~L~~-~-k~~fA~-~~ 449 (609)
..++..+++||+|.|| |-.|..+++.|++ .|. +++.++++.-=... ....+.. . ...+.. +.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 120 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RGY-------NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDV 120 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEEechhhccccchhhHHhhhcCCceEEEeeC
Confidence 3456678899999997 7778788777754 353 57777664210000 0000000 0 011111 22
Q ss_pred CCCCCHHHHHhcc--CCcEEEEccCCC-C----CC------CHHHHHHHHccCCCcEEEe
Q 007301 450 EPVKELVDAVNAI--KPTILIGTSGQG-R----TF------TKEVVEAMASLNEKPIIFS 496 (609)
Q Consensus 450 ~~~~~L~e~V~~v--kPtvLIG~S~~~-g----~F------t~evv~~Ma~~~erPIIFa 496 (609)
.+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+.
T Consensus 121 ~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 121 TDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2234677778765 699998544322 1 11 3456777766555557663
No 448
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=41.98 E-value=13 Score=41.81 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=29.8
Q ss_pred hcCCCccccccCCcchHHHHHhcCCCCCceEEEEecC
Q 007301 206 YSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDG 242 (609)
Q Consensus 206 ~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG 242 (609)
+.+|-|.-+|.+-|.+|+++-+++ |++||+|=
T Consensus 213 gqNPTG~tls~errk~iy~LArKy-----DfLIVeDd 244 (472)
T KOG0634|consen 213 GQNPTGNTLSLERRKKIYQLARKY-----DFLIVEDD 244 (472)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHc-----CEEEEecC
Confidence 679999999999999999999998 79999985
No 449
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=41.82 E-value=36 Score=36.70 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=24.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCc
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 429 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GL 429 (609)
|+|+|||.||+.+|-.+.+. ..| .++.++|+.-.
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~ 35 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRT 35 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCC
Confidence 79999999999999777643 124 35677776543
No 450
>PRK06185 hypothetical protein; Provisional
Probab=41.81 E-value=31 Score=36.68 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=25.9
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
+..|+|+|||.+|+..|-.+.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999998876654 464 577777753
No 451
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=41.79 E-value=28 Score=36.83 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.7
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+..|+|+|||.||+..|-.+.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877653 364 57888875
No 452
>PRK07588 hypothetical protein; Provisional
Probab=41.76 E-value=32 Score=36.55 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.9
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~ 404 (609)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999977764
No 453
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=41.49 E-value=1.6e+02 Score=28.14 Aligned_cols=112 Identities=18% Similarity=0.222 Sum_probs=59.1
Q ss_pred ccccCCCCCCCccccchhhhhHHhhhCCCCCCceeeEEeecCCCccccccCcccccccccCCchhhhHHHHHHHHHHHHH
Q 007301 244 RILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQ 323 (609)
Q Consensus 244 rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlGlr~~R~~geey~~~idEfv~Av~~ 323 (609)
||||+ |.|....|..+-.. ..--+-.+|.|+=+. ..+....+...++.+++ ..+..
T Consensus 1 rILGI-DPGl~~~G~av~~~-----------~~~~~~~~~~g~i~t-----------~~~~~~~~rl~~I~~~l-~~~i~ 56 (154)
T cd00529 1 RILGI-DPGSRNTGYGVIEQ-----------EGRKLIYLASGVIRT-----------SSDAPLPSRLKTIYDGL-NEVID 56 (154)
T ss_pred CEEEE-ccCcCceEEEEEEe-----------eCCeEEEEEeeEEEC-----------CCCCCHHHHHHHHHHHH-HHHHH
Confidence 46665 66665555444221 012355677775221 11222344455544444 44446
Q ss_pred hcCCCceeeeec-CCCCcHHHHHHHHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCC-----CceEEEeCcchHHH
Q 007301 324 NYGERILIQFED-FANHNAFDLLEKYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLA-----DQRFLFLGAGEAGT 396 (609)
Q Consensus 324 ~fGp~~lIqfED-f~~~nAf~lL~ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~-----d~rivf~GAGsAg~ 396 (609)
.|-|+ .+-.|+ |-+.|.-..+.- .-+-..++.++...|.++. .-|-.+.|.|.|.-
T Consensus 57 ~~~Pd-~vaiE~~~~~~n~~s~~~l----------------~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 57 QFQPD-VVAIERVFFAKNPDSALKL----------------GQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HhCCC-EEEEEEhhcccChHHHHHH----------------HHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 78786 567898 334443221110 1134455666667777654 45778889998864
No 454
>PLN02342 ornithine carbamoyltransferase
Probab=41.44 E-value=3.1e+02 Score=30.18 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=81.2
Q ss_pred HHHhcCCCceeeeecCCCCcHHHHHHHHcCCCeeee-cCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHH
Q 007301 321 VKQNYGERILIQFEDFANHNAFDLLEKYGTTHLVFN-DDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIA 399 (609)
Q Consensus 321 v~~~fGp~~lIqfEDf~~~nAf~lL~ryr~~~~~FN-DDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA 399 (609)
+-.+| .++++ +--+ .+.+.+.+.+| .++||.| .|-..-=.=+|+=++.-.+..| +|++.||+++|-+. -+|
T Consensus 136 vLs~y-~D~Iv-iR~~-~~~~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~---nva 207 (348)
T PLN02342 136 VLSRY-NDIIM-ARVF-AHQDVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGN---NIV 207 (348)
T ss_pred HHHHh-CCEEE-EeCC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCc---hhH
Confidence 34556 55555 2222 34455555665 4689999 3333455667888777666665 69999999999874 388
Q ss_pred HHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc-----cCCCCCHHHHHhccCCcEEEEcc
Q 007301 400 ELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-----HEPVKELVDAVNAIKPTILIGTS 471 (609)
Q Consensus 400 ~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-----~~~~~~L~e~V~~vkPtvLIG~S 471 (609)
+-++.++.+ .|+ ++.++-.+|+.-.. .....+++ -....++.|+|+. .||+.-.+
T Consensus 208 ~Sli~~~~~-~G~-------~v~~~~P~~~~~~~-------~~~~~a~~~g~~~~~~~~d~~eav~~--aDVvy~~~ 267 (348)
T PLN02342 208 HSWLLLAAV-LPF-------HFVCACPKGYEPDA-------KTVEKARAAGISKIEITNDPAEAVKG--ADVVYTDV 267 (348)
T ss_pred HHHHHHHHH-cCC-------EEEEECCcccccCH-------HHHHHHHHhCCCcEEEEcCHHHHhCC--CCEEEECC
Confidence 888887766 575 58888888763321 11111221 1123689999997 99999875
No 455
>PRK10262 thioredoxin reductase; Provisional
Probab=41.41 E-value=28 Score=36.08 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCCceEEEeCcchHHHHHHHHHHH
Q 007301 381 LADQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~ 404 (609)
-+..+|+|+|||.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999887765
No 456
>PRK07774 short chain dehydrogenase; Provisional
Probab=41.33 E-value=47 Score=32.33 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=22.8
Q ss_pred CCCCceEEEeCc-chHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GA-GsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++++.+++|.|| |..|..+|+.+ .+ .| .+++++|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l----~~-~g-------~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEAL----AR-EG-------ASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHH----HH-CC-------CEEEEEeCC
Confidence 467789999998 44444444444 43 35 358888764
No 457
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=41.30 E-value=57 Score=38.24 Aligned_cols=93 Identities=16% Similarity=0.284 Sum_probs=50.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCCCCHHHHHhccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 463 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 463 (609)
.||.|+|+|..|..+|..+... |. ..+++.+|.+ .++ +...++ +.-......++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~~-~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAVS-LGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHHH-CCCCCcccCCHHHHhcC--
Confidence 6899999999999999888653 53 2458888874 111 111110 00000112356666654
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecC
Q 007301 464 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLS 498 (609)
Q Consensus 464 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLS 498 (609)
+|++| ++..+ ...+++++.|+.+ .+.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44333 2456777776643 2333444344
No 458
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=41.29 E-value=46 Score=37.03 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=56.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchh---cchhcc-ccCCCCCHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KKPWAH-EHEPVKELVDAV 459 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~---k~~fA~-~~~~~~~L~e~V 459 (609)
.+||++|||-.|..+|..|++- |- .+|++.|+. .+-.+.+..+ +...+. +..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998763 42 589988873 1111111111 112222 345556899999
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHc
Q 007301 460 NAIKPTILIGTSGQGRTFTKEVVEAMAS 487 (609)
Q Consensus 460 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~ 487 (609)
+. .++.|-+- ++-++..++++-.+
T Consensus 67 ~~--~d~VIn~~--p~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAA--PPFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeC--CchhhHHHHHHHHH
Confidence 98 59888765 45678888877654
No 459
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=41.24 E-value=37 Score=33.67 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++++.+++|.||.. .|..+|+.++ + .|. +++++|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~----~-~G~-------~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFV----A-EGA-------RVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 36788999999843 4444555544 3 363 57777764
No 460
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=41.23 E-value=1.7e+02 Score=31.18 Aligned_cols=115 Identities=20% Similarity=0.323 Sum_probs=74.4
Q ss_pred CcHHHHHHHHcCCCeeeec-CCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhh
Q 007301 339 HNAFDLLEKYGTTHLVFND-DIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 417 (609)
Q Consensus 339 ~nAf~lL~ryr~~~~~FND-DiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeA 417 (609)
+.+.+.+.+| .++|++|- |-..--.=+|+=++.-.+..| .|++.||+++|-.. -+++-++.++.+ .|+
T Consensus 105 ~~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~----- 173 (304)
T TIGR00658 105 HEDVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM----- 173 (304)
T ss_pred hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-----
Confidence 3455555665 36899994 333344567777777666665 49999999999863 488888887766 564
Q ss_pred cCcEEEEcccCcccCCCccCCchhcchhccc-c---CCCCCHHHHHhccCCcEEEEcc
Q 007301 418 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-H---EPVKELVDAVNAIKPTILIGTS 471 (609)
Q Consensus 418 r~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~-~---~~~~~L~e~V~~vkPtvLIG~S 471 (609)
++.++-.+++.-... .-+.-+.+++. . ....++.|+++. .||+.-.+
T Consensus 174 --~v~~~~P~~~~~~~~---~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 --DVVVATPEGYEPDAD---IVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred --EEEEECCchhcCCHH---HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 688888877633211 11111233332 1 123689999997 99998764
No 461
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=40.71 E-value=29 Score=36.06 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=23.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~ 31 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEAT 31 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCC
Confidence 8999999999999977764 364 46666665
No 462
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.58 E-value=33 Score=37.65 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=22.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcc
Q 007301 386 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 430 (609)
Q Consensus 386 ivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi 430 (609)
|||+|+|.||+.-|-..+. .| .++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888766554 37 478999988765
No 463
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=40.57 E-value=2.1e+02 Score=28.77 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=29.2
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 454 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
++.+.+.. .|++|-.|...-.|.--++++|+ +..|+|.
T Consensus 256 ~~~~~l~~--ad~~i~ps~~~e~~~~~l~EA~a--~G~PvI~ 293 (355)
T cd03819 256 DMPAAYAL--ADIVVSASTEPEAFGRTAVEAQA--MGRPVIA 293 (355)
T ss_pred cHHHHHHh--CCEEEecCCCCCCCchHHHHHHh--cCCCEEE
Confidence 46666766 89999877444568889999999 5789986
No 464
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=40.38 E-value=1.6e+02 Score=33.38 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=27.3
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 455 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 455 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
+.+..+. .++++=.|-.- .|.--++|+|| +..|+|-
T Consensus 386 ~~~~~~~--adv~v~pS~~E-gfgl~~lEAma--~G~PVI~ 421 (500)
T TIGR02918 386 LSEVYKD--YELYLSASTSE-GFGLTLMEAVG--SGLGMIG 421 (500)
T ss_pred HHHHHHh--CCEEEEcCccc-cccHHHHHHHH--hCCCEEE
Confidence 5555654 78888777644 59999999999 6777776
No 465
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=40.32 E-value=36 Score=36.34 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=18.6
Q ss_pred CceEEEeCcchHHHHHHHHHHH
Q 007301 383 DQRFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~ 404 (609)
..+|+|+|||.||+-.|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4679999999999999877754
No 466
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.16 E-value=19 Score=43.67 Aligned_cols=129 Identities=23% Similarity=0.351 Sum_probs=78.6
Q ss_pred HHcCCCeeeecCCcchHHHHHHHHHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 347 KYGTTHLVFNDDIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 347 ryr~~~~~FNDDiQGTaaV~LAgll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
||-..+.||.++-| ++|.++++.++|||+.|+-..+-++.. |+.--+ ...|.+.|-
T Consensus 412 RYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~-~g~ItVTDm 467 (1013)
T KOG2012|consen 412 RYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGN-SGKITVTDM 467 (1013)
T ss_pred ccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCC-CCceEEecc
Confidence 56666666666544 689999999999999998776666543 553111 124666665
Q ss_pred cCcccCCCccCCchhcchhc-ccc--C--CCCCHHHHHhccCCcEEEEc-------cCCCCCCCHHHHHHHHccCCCcEE
Q 007301 427 KGLIVSSRLESLQHFKKPWA-HEH--E--PVKELVDAVNAIKPTILIGT-------SGQGRTFTKEVVEAMASLNEKPII 494 (609)
Q Consensus 427 ~GLi~~~R~~~L~~~k~~fA-~~~--~--~~~~L~e~V~~vkPtvLIG~-------S~~~g~Ft~evv~~Ma~~~erPII 494 (609)
+ +|.++ +|+. .|- |+. . ....-.+|+....|++.|=. -+ -++|+.+--+.+. =++
T Consensus 468 D-~IEkS---NLnR---QFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~Va 534 (1013)
T KOG2012|consen 468 D-HIEKS---NLNR---QFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVA 534 (1013)
T ss_pred c-hhhhc---cccc---eeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHH
Confidence 4 33333 2432 222 221 1 11356789999999998733 22 3578888776653 122
Q ss_pred EecCCCCCCCCCCHHHHhccccCcEEE
Q 007301 495 FSLSNPTSQSECTAEEAYTWSQGRAIF 521 (609)
Q Consensus 495 FaLSNPt~~aEct~e~A~~wT~Graif 521 (609)
=||=|= ||-.|-|.||+|
T Consensus 535 nALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 535 NALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred Hhhcch---------hhhhhhhhhhhh
Confidence 344442 577788888877
No 467
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=40.09 E-value=38 Score=35.03 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=22.0
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 388 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 388 f~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
|+|.|..|..+|..++.. | .+++++|+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~-----G-------~~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-----G-------HPVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhC-----C-------CeEEEEeCC
Confidence 689999999999988753 5 357777764
No 468
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=40.07 E-value=35 Score=39.60 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
..|+|+|||-+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 479999999999999988865 363 689999874
No 469
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=40.06 E-value=27 Score=37.20 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999977754 364 56777765
No 470
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=40.00 E-value=33 Score=38.39 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..|||+|+|.+|+++|..+... |+ ++.|++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 5799999999999999998753 64 58889876
No 471
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=39.93 E-value=34 Score=38.96 Aligned_cols=33 Identities=30% Similarity=0.599 Sum_probs=27.1
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+..|+|+|+|..|+++|..+... |+ ++.|+|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999988753 64 68888875
No 472
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=39.75 E-value=1.3e+02 Score=31.29 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred cccCCcchHHHHHhcCCCCCceEEEEecCccccc
Q 007301 214 ISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 247 (609)
Q Consensus 214 is~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 247 (609)
++.+-..++.+.+.++-.++.+++||+-|..-.|
T Consensus 28 ~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g 61 (266)
T PRK12314 28 INLERIEQLVFVISDLMNKGKEVILVSSGAIGAG 61 (266)
T ss_pred cCHHHHHHHHHHHHHHHHCCCeEEEEeeCccccc
Confidence 3333344555556555566778999988765333
No 473
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=39.68 E-value=1.6e+02 Score=31.00 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=23.1
Q ss_pred CCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcc
Q 007301 381 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 426 (609)
Q Consensus 381 L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs 426 (609)
-.+++|+|+|+|+.|...+.+. .+ .|. ++++.+|+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~a-k~----~G~------~~vi~~~~ 220 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGA-RI----RGA------SRIIGVDL 220 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CeEEEEcC
Confidence 4578999999987776544433 32 364 46777765
No 474
>PRK08265 short chain dehydrogenase; Provisional
Probab=39.67 E-value=44 Score=33.33 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=24.5
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
++++++++|.||.+ ||...|+..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGAT---LIGAAVARALVA-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 47789999999843 455555555544 463 67888764
No 475
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=39.66 E-value=1.8e+02 Score=28.36 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=24.1
Q ss_pred CCCCceEEEeCcch-HHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 380 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 380 ~L~d~rivf~GAGs-Ag~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.+++.+++|.||++ .|..+|+.++ + .|. ++.++|++-
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~----~-~G~-------~v~~~~~~~ 42 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFV----E-AGA-------KVIGFDQAF 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-CCC-------EEEEEecch
Confidence 47788999999854 4555555543 3 363 677777754
No 476
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=39.61 E-value=37 Score=38.01 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=27.0
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
...+++|+|||.||+..|..+.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 35799999999999999988864 253 58888864
No 477
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=39.60 E-value=61 Score=33.84 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|.|+|.|.-|..+|..+... | .+++++|+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-----G-------~~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-----G-------HQLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 799999999999999998653 5 367888763
No 478
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=39.57 E-value=35 Score=36.31 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+|+|+|||-+|+.+|-.+.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 68999999999999988764 25 368888875
No 479
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=39.56 E-value=34 Score=35.79 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=24.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888652 5 357888875
No 480
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=39.52 E-value=76 Score=36.30 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=62.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhcc-ccC---CCCCHHHHH
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHE---PVKELVDAV 459 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~-~~~---~~~~L~e~V 459 (609)
.+|-|+|-|..|.++|.-|+.. |. ++.+.|+. .++ .+++...++. ... ...++.|++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v 67 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFV 67 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHH
Confidence 3699999999999999999763 64 57777762 222 2222222222 111 346899999
Q ss_pred hcc-CCcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecCCCC
Q 007301 460 NAI-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 501 (609)
Q Consensus 460 ~~v-kPtvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNPt 501 (609)
+.+ +|+++| ++=..+.-.++|+..+.. ..+.-||.=+||=.
T Consensus 68 ~~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 68 LSIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred hcCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 764 588888 443445556666654443 35677999999844
No 481
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=39.33 E-value=36 Score=35.85 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=58.7
Q ss_pred CCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccccCCC-CCHH
Q 007301 378 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV-KELV 456 (609)
Q Consensus 378 g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~~~~~-~~L~ 456 (609)
|..++ +++|+||=--|.+||+.|-.. + +|+++|-+ +|-+.+-.+.-.. ..+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 44555 899999999999999888542 2 79999974 2222222111011 1111
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007301 457 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 457 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
+ + .++||++|=++|-||+ +++.++.. + |=+|=.=||.
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~---~--p~v~IVEdP~ 128 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF---N--PKVFIVEDPK 128 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc---C--CCEEEEECCC
Confidence 1 1 2479999999999997 99888755 3 5666677887
No 482
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=39.30 E-value=85 Score=30.86 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=24.2
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.++++.++||.||.. ||...++..+.+ .|. +++++|++
T Consensus 4 ~~~~~k~vlVtGas~---gIG~~la~~l~~-~G~-------~v~~~~r~ 41 (260)
T PRK12823 4 QRFAGKVVVVTGAAQ---GIGRGVALRAAA-EGA-------RVVLVDRS 41 (260)
T ss_pred cccCCCEEEEeCCCc---hHHHHHHHHHHH-CCC-------EEEEEeCc
Confidence 347788999999843 444445554444 363 57888874
No 483
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=39.21 E-value=74 Score=35.22 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=47.1
Q ss_pred HHHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcc-----h
Q 007301 370 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-----P 444 (609)
Q Consensus 370 ll~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~-----~ 444 (609)
+..++.-....|+..|++++|.++-.-.++.++ ++.|+.. ..+ |.-.... +.....++ .
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l-----~elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAY-----EDLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH-----HHCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 455666667889999999998766555555433 3458731 111 0000000 00111110 1
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccC
Q 007301 445 WAHEHEPVKELVDAVNAIKPTILIGTSG 472 (609)
Q Consensus 445 fA~~~~~~~~L~e~V~~vkPtvLIG~S~ 472 (609)
..-+..+...+++.++..|||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 1111122346889999999999999764
No 484
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=39.07 E-value=39 Score=37.39 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=26.5
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+-.++|+|+|+||+..|..+... | +++.++|.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 34699999999999998877653 5 579999974
No 485
>PLN02568 polyamine oxidase
Probab=39.04 E-value=19 Score=41.15 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHH
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALE 405 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~ 405 (609)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 456899999999999999999764
No 486
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=38.96 E-value=26 Score=32.18 Aligned_cols=32 Identities=16% Similarity=0.394 Sum_probs=25.2
Q ss_pred CchhhhHHHHHHHHHHHHH---hcCCCceeeeecC
Q 007301 305 AIGQEYAELLHEFMTAVKQ---NYGERILIQFEDF 336 (609)
Q Consensus 305 ~~geey~~~idEfv~Av~~---~fGp~~lIqfEDf 336 (609)
.+.++||.|+|+|+..|.+ .||....-+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5678999999999998888 4666656667665
No 487
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=38.89 E-value=34 Score=42.35 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=26.9
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..++|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999988865 363 57777764
No 488
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=38.83 E-value=38 Score=36.30 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=25.0
Q ss_pred CceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 383 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 383 d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 4579999999999999976644 375 46777764
No 489
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=38.77 E-value=35 Score=38.90 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 385 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999877754 24 4688888753
No 490
>PRK06057 short chain dehydrogenase; Provisional
Probab=38.68 E-value=84 Score=30.98 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=25.2
Q ss_pred CCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 380 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 380 ~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
.+++++++|.||.. ||...++..+.+ .|. +++++|++
T Consensus 4 ~~~~~~vlItGasg---gIG~~~a~~l~~-~G~-------~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGS---GIGLATARRLAA-EGA-------TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 37789999999943 555556666654 363 58888763
No 491
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=38.54 E-value=44 Score=34.78 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=30.5
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHH--HhcCCCHhhhcCcEEEEcccC
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEIS--KQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~--~~~G~s~eeAr~~i~lvDs~G 428 (609)
+..||+++|+|.-|.-+++.|+.... +.-|.+ .--+|.++|.+=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~---~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP---GGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC---CCCEEEEECCCE
Confidence 56799999999999999999987511 001210 002899999873
No 492
>PRK06834 hypothetical protein; Provisional
Probab=38.51 E-value=40 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=27.2
Q ss_pred CCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccC
Q 007301 382 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 428 (609)
Q Consensus 382 ~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~G 428 (609)
.+..|+|+|||.+|+-.|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 46789999999999999888765 375 467777653
No 493
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=38.46 E-value=39 Score=36.08 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
..|+|+|||-+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478899886
No 494
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=38.45 E-value=1.2e+02 Score=32.28 Aligned_cols=102 Identities=16% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccC-------Cchhcch
Q 007301 372 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLES-------LQHFKKP 444 (609)
Q Consensus 372 ~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~-------L~~~k~~ 444 (609)
.++.-....+...|++++|-+.-..++++++.+ .|+.... + .+....+. +......
T Consensus 268 ~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e-----~G~~v~~----~--------~~~~~~~~~~~~~~~~~~~~~~ 330 (399)
T cd00316 268 DALADYHEYLGGKKVAIFGDGDLLLALARFLLE-----LGMEVVA----A--------GTTFGHKADYERREELLGEGTE 330 (399)
T ss_pred HHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHH-----CCCEEEE----E--------EeCCCCHHHHHHHHHhcCCCCE
Confidence 344444456788999999988888899876654 4762111 1 11111010 0000000
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007301 445 WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 501 (609)
Q Consensus 445 fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 501 (609)
. -.......+.+.++..+||.+||.+.. ....+.+ ..|.+ .+++|.
T Consensus 331 ~-~~~~d~~~~~~~~~~~~pdl~ig~~~~-----~~~~~~~----~ip~~-~~~~p~ 376 (399)
T cd00316 331 V-VDDGDLEELEELIRELKPDLIIGGSKG-----RYIAKKL----GIPLV-RIGFPI 376 (399)
T ss_pred E-EeCCCHHHHHHHHhhcCCCEEEECCcH-----HHHHHHh----CCCEE-EcCCcc
Confidence 0 011223467778888889999997742 2333332 56654 566663
No 495
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.43 E-value=23 Score=40.44 Aligned_cols=44 Identities=34% Similarity=0.332 Sum_probs=31.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCC--CHhhhcCcE-----EEEcccCcccC
Q 007301 384 QRFLFLGAGEAGTGIAELIALEISKQTNM--PLEETRKKI-----WLVDSKGLIVS 432 (609)
Q Consensus 384 ~rivf~GAGsAg~GIA~li~~~~~~~~G~--s~eeAr~~i-----~lvDs~GLi~~ 432 (609)
+||+|+|||-||++.|..|+++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 64 344555442 12566666654
No 496
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.40 E-value=1.6e+02 Score=32.65 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=27.6
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007301 454 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 495 (609)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 495 (609)
++.+.... .|+++=.|-. -.|.--++++|+ +.+|+|.
T Consensus 363 ~v~~~l~~--aDv~vlpS~~-Eg~p~~vlEAma--~G~PVVa 399 (475)
T cd03813 363 NVKEYLPK--LDVLVLTSIS-EGQPLVILEAMA--AGIPVVA 399 (475)
T ss_pred cHHHHHHh--CCEEEeCchh-hcCChHHHHHHH--cCCCEEE
Confidence 45566654 8888866653 358889999999 6889988
No 497
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=38.25 E-value=45 Score=38.47 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=50.6
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcch--hccccC--C-CC
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP--WAHEHE--P-VK 453 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~--fA~~~~--~-~~ 453 (609)
..+++-||+++|||-.|+-..+.|+. .|+ +.|-++|.+-+ + |....+. |-+++- + ..
T Consensus 8 eai~~~riLvVGaGGIGCELLKnLal-----~gf------~~IhiIDlDTI---D----lSNLNRQFLFrkkhVgqsKA~ 69 (603)
T KOG2013|consen 8 EAIKSGRILVVGAGGIGCELLKNLAL-----TGF------EEIHIIDLDTI---D----LSNLNRQFLFRKKHVGQSKAT 69 (603)
T ss_pred HHhccCeEEEEecCcccHHHHHHHHH-----hcC------CeeEEEeccce---e----ccchhhhheeehhhcCchHHH
Confidence 34578999999999888777776654 376 78999999733 2 2222222 323321 1 13
Q ss_pred CHHHHHhccCCcEEEEccCCCCCC
Q 007301 454 ELVDAVNAIKPTILIGTSGQGRTF 477 (609)
Q Consensus 454 ~L~e~V~~vkPtvLIG~S~~~g~F 477 (609)
.-.++|++..|.+=| ++=.+.++
T Consensus 70 vA~~~v~~Fnpn~~l-~~yhanI~ 92 (603)
T KOG2013|consen 70 VAAKAVKQFNPNIKL-VPYHANIK 92 (603)
T ss_pred HHHHHHHHhCCCCce-Eecccccc
Confidence 567889999888766 33334443
No 498
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=38.22 E-value=82 Score=30.38 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=27.9
Q ss_pred HHHHHHhCCCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEccc
Q 007301 371 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 427 (609)
Q Consensus 371 l~Alr~~g~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~ 427 (609)
+.++...+.-..+++++++|+|+.|..++++... .| .+++.++++
T Consensus 123 ~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 123 YHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 3445555544578899999999865555543322 35 357777664
No 499
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=38.18 E-value=46 Score=37.96 Aligned_cols=79 Identities=14% Similarity=0.301 Sum_probs=47.4
Q ss_pred CCCCCceEEEeCcchHHHHHHHHHHHHHHHhcCCCHhhhcCcEEEEcccCcccCCCccCCchhcchhccc---cCCCCCH
Q 007301 379 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 455 (609)
Q Consensus 379 ~~L~d~rivf~GAGsAg~GIA~li~~~~~~~~G~s~eeAr~~i~lvDs~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 455 (609)
..|...|++|+|-++-+.|+++.+... .|+. +..++.. .....+.+.+.-+.+..+ .++...+
T Consensus 301 ~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~ei 366 (513)
T CHL00076 301 QNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTEV 366 (513)
T ss_pred cccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHHH
Confidence 678899999999999999999988765 4873 2223321 110000011111111110 1122457
Q ss_pred HHHHhccCCcEEEEcc
Q 007301 456 VDAVNAIKPTILIGTS 471 (609)
Q Consensus 456 ~e~V~~vkPtvLIG~S 471 (609)
.+.|+..+||++||.|
T Consensus 367 ~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 367 GDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHhcCCCEEEECc
Confidence 8889999999999976
No 500
>PRK07538 hypothetical protein; Provisional
Probab=38.17 E-value=37 Score=36.50 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007301 385 RFLFLGAGEAGTGIAELIAL 404 (609)
Q Consensus 385 rivf~GAGsAg~GIA~li~~ 404 (609)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999999888876654
Done!