Query 007303
Match_columns 608
No_of_seqs 687 out of 3682
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 21:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02964 phosphatidylserine de 100.0 7E-126 1E-130 1049.2 38.7 560 1-603 1-566 (644)
2 KOG2419 Phosphatidylserine dec 100.0 5E-100 1E-104 801.9 18.5 555 1-603 206-897 (975)
3 PRK00723 phosphatidylserine de 100.0 1.1E-59 2.5E-64 483.6 18.4 232 363-603 2-233 (297)
4 PTZ00403 phosphatidylserine de 100.0 8.3E-52 1.8E-56 430.4 16.8 190 408-603 63-260 (353)
5 PLN02938 phosphatidylserine de 100.0 1.2E-51 2.5E-56 436.4 15.7 210 385-603 77-331 (428)
6 PRK03140 phosphatidylserine de 100.0 2.9E-51 6.2E-56 415.3 17.4 189 409-603 17-205 (259)
7 PRK00044 psd phosphatidylserin 100.0 7.7E-51 1.7E-55 418.5 17.1 190 408-603 16-210 (288)
8 PRK03934 phosphatidylserine de 100.0 2.9E-49 6.3E-54 401.9 18.2 189 407-603 4-196 (265)
9 PRK09629 bifunctional thiosulf 100.0 4.9E-47 1.1E-51 425.9 16.9 190 408-603 339-533 (610)
10 TIGR00163 PS_decarb phosphatid 100.0 3.5E-45 7.6E-50 367.0 15.1 159 440-602 1-162 (238)
11 PF02666 PS_Dcarbxylase: Phosp 100.0 6.4E-40 1.4E-44 322.3 14.0 147 453-603 1-148 (202)
12 KOG2420 Phosphatidylserine dec 100.0 2E-38 4.4E-43 317.0 11.2 187 407-603 87-306 (382)
13 COG0688 Psd Phosphatidylserine 100.0 2E-37 4.4E-42 308.1 10.4 172 408-603 13-185 (239)
14 TIGR00164 PS_decarb_rel phosph 99.9 6.6E-23 1.4E-27 199.1 12.8 116 450-602 15-132 (189)
15 PRK05305 phosphatidylserine de 99.9 1.9E-21 4.2E-26 191.4 12.5 117 453-603 37-153 (206)
16 KOG1030 Predicted Ca2+-depende 99.5 6.4E-14 1.4E-18 130.1 7.8 89 50-178 2-97 (168)
17 KOG0027 Calmodulin and related 99.4 9.4E-13 2E-17 123.7 10.3 118 184-309 11-137 (151)
18 COG5126 FRQ1 Ca2+-binding prot 99.4 1.7E-12 3.6E-17 121.3 10.5 125 176-309 14-144 (160)
19 cd08677 C2A_Synaptotagmin-13 C 99.2 1.5E-11 3.2E-16 110.0 7.6 86 52-175 12-106 (118)
20 cd04016 C2_Tollip C2 domain pr 99.2 2.1E-11 4.6E-16 110.1 8.7 82 53-174 1-89 (121)
21 cd04039 C2_PSD C2 domain prese 99.2 2E-11 4.4E-16 108.1 8.3 88 54-180 1-100 (108)
22 COG5126 FRQ1 Ca2+-binding prot 99.2 1.3E-11 2.9E-16 115.3 7.1 125 148-281 23-156 (160)
23 KOG0028 Ca2+-binding protein ( 99.2 5.7E-11 1.2E-15 108.8 10.1 122 179-308 30-157 (172)
24 cd04041 C2A_fungal C2 domain f 99.2 8E-11 1.7E-15 104.7 8.7 85 54-176 1-98 (111)
25 KOG0027 Calmodulin and related 99.2 4.9E-11 1.1E-15 112.1 7.3 125 149-281 12-149 (151)
26 cd08395 C2C_Munc13 C2 domain t 99.1 1.5E-10 3.2E-15 104.4 8.0 85 56-178 2-101 (120)
27 cd08688 C2_KIAA0528-like C2 do 99.1 1.8E-10 3.9E-15 102.2 7.3 97 56-191 1-109 (110)
28 cd04038 C2_ArfGAP C2 domain pr 99.1 2.5E-10 5.4E-15 106.5 7.9 86 54-179 2-93 (145)
29 cd08375 C2_Intersectin C2 doma 99.1 3.1E-10 6.6E-15 104.8 7.9 86 53-177 14-106 (136)
30 cd08379 C2D_MCTP_PRT_plant C2 99.1 2.5E-10 5.3E-15 103.9 7.2 97 55-193 1-113 (126)
31 cd08682 C2_Rab11-FIP_classI C2 99.1 2.5E-10 5.4E-15 103.8 7.0 82 56-176 1-94 (126)
32 cd04042 C2A_MCTP_PRT C2 domain 99.0 5.9E-10 1.3E-14 100.5 8.2 98 56-194 2-106 (121)
33 cd04032 C2_Perforin C2 domain 99.0 8E-10 1.7E-14 100.7 8.8 92 46-176 20-118 (127)
34 cd04028 C2B_RIM1alpha C2 domai 99.0 8.4E-10 1.8E-14 102.8 8.1 84 53-175 28-124 (146)
35 cd04045 C2C_Tricalbin-like C2 99.0 1.1E-09 2.5E-14 98.8 8.3 99 54-194 1-106 (120)
36 cd08681 C2_fungal_Inn1p-like C 99.0 8.8E-10 1.9E-14 98.8 7.3 86 54-178 1-93 (118)
37 cd08376 C2B_MCTP_PRT C2 domain 99.0 1.2E-09 2.6E-14 97.6 7.5 84 55-177 1-91 (116)
38 PTZ00183 centrin; Provisional 99.0 8.8E-10 1.9E-14 103.3 6.8 62 219-280 92-153 (158)
39 cd04029 C2A_SLP-4_5 C2 domain 99.0 1.3E-09 2.7E-14 99.2 7.5 93 46-176 7-113 (125)
40 cd04019 C2C_MCTP_PRT_plant C2 99.0 1.4E-09 3.1E-14 102.0 8.0 100 55-193 1-110 (150)
41 cd04024 C2A_Synaptotagmin-like 99.0 1.9E-09 4.2E-14 97.8 8.5 85 54-177 1-94 (128)
42 cd08381 C2B_PI3K_class_II C2 d 99.0 1.4E-09 3.1E-14 98.4 7.6 86 53-176 12-110 (122)
43 PTZ00183 centrin; Provisional 99.0 4.1E-09 8.9E-14 98.7 10.9 124 177-308 12-141 (158)
44 cd08391 C2A_C2C_Synaptotagmin_ 99.0 1.7E-09 3.7E-14 97.1 7.6 102 54-198 1-115 (121)
45 cd04036 C2_cPLA2 C2 domain pre 99.0 1.5E-09 3.3E-14 97.5 7.3 83 56-177 2-93 (119)
46 cd08393 C2A_SLP-1_2 C2 domain 98.9 1.8E-09 3.8E-14 98.2 6.7 86 52-175 13-112 (125)
47 cd04044 C2A_Tricalbin-like C2 98.9 3.9E-09 8.4E-14 95.2 8.8 89 53-180 1-98 (124)
48 cd08392 C2A_SLP-3 C2 domain fi 98.9 2.1E-09 4.7E-14 98.1 7.1 87 51-175 12-112 (128)
49 cd08387 C2A_Synaptotagmin-8 C2 98.9 2.8E-09 6.1E-14 96.5 7.8 94 46-177 8-112 (124)
50 cd08385 C2A_Synaptotagmin-1-5- 98.9 2.5E-09 5.4E-14 96.8 7.4 90 50-177 12-112 (124)
51 KOG0028 Ca2+-binding protein ( 98.9 3.1E-09 6.8E-14 97.5 7.9 124 146-281 34-170 (172)
52 cd04025 C2B_RasA1_RasA4 C2 dom 98.9 3.2E-09 6.9E-14 96.0 7.8 83 56-177 2-91 (123)
53 cd04037 C2E_Ferlin C2 domain f 98.9 3.2E-09 6.9E-14 96.4 7.7 84 55-176 1-92 (124)
54 PTZ00184 calmodulin; Provision 98.9 2.9E-09 6.2E-14 98.5 7.5 64 219-282 49-113 (149)
55 cd04011 C2B_Ferlin C2 domain s 98.9 3.1E-09 6.8E-14 94.3 7.1 98 55-191 5-110 (111)
56 cd08686 C2_ABR C2 domain in th 98.9 3.4E-09 7.4E-14 94.6 7.2 79 56-174 1-92 (118)
57 cd04050 C2B_Synaptotagmin-like 98.9 3.5E-09 7.6E-14 93.1 7.1 94 56-191 2-102 (105)
58 cd08382 C2_Smurf-like C2 domai 98.9 4.8E-09 1E-13 95.0 8.1 83 56-178 2-93 (123)
59 cd08378 C2B_MCTP_PRT_plant C2 98.9 3.9E-09 8.5E-14 95.4 7.4 97 56-193 2-105 (121)
60 cd04048 C2A_Copine C2 domain f 98.9 3.4E-09 7.4E-14 95.5 7.0 76 65-178 18-103 (120)
61 KOG0696 Serine/threonine prote 98.9 1.1E-09 2.4E-14 114.2 4.2 85 54-176 180-276 (683)
62 PTZ00184 calmodulin; Provision 98.9 1.1E-08 2.4E-13 94.5 10.5 124 149-280 15-147 (149)
63 cd08401 C2A_RasA2_RasA3 C2 dom 98.9 5E-09 1.1E-13 94.7 7.7 82 56-176 2-91 (121)
64 cd08678 C2_C21orf25-like C2 do 98.9 5.7E-09 1.2E-13 94.9 7.9 85 56-179 1-91 (126)
65 cd04009 C2B_Munc13-like C2 dom 98.9 5.5E-09 1.2E-13 96.0 7.8 87 53-177 15-118 (133)
66 cd08680 C2_Kibra C2 domain fou 98.9 4.3E-09 9.3E-14 95.6 6.9 86 52-175 12-111 (124)
67 cd04031 C2A_RIM1alpha C2 domai 98.9 4.7E-09 1E-13 94.9 6.9 89 48-174 10-112 (125)
68 cd08388 C2A_Synaptotagmin-4-11 98.8 7E-09 1.5E-13 94.7 7.7 85 53-175 15-112 (128)
69 PF13499 EF-hand_7: EF-hand do 98.8 6.2E-09 1.3E-13 83.3 6.4 61 219-279 2-66 (66)
70 cd04018 C2C_Ferlin C2 domain t 98.8 7.6E-09 1.6E-13 97.1 7.5 73 67-178 34-107 (151)
71 cd08377 C2C_MCTP_PRT C2 domain 98.8 1.4E-08 2.9E-13 91.1 8.4 83 54-176 1-90 (119)
72 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.8 8.2E-09 1.8E-13 98.2 7.2 87 52-176 25-125 (162)
73 cd04014 C2_PKC_epsilon C2 doma 98.8 1.3E-08 2.7E-13 93.3 8.2 86 52-177 2-104 (132)
74 KOG0034 Ca2+/calmodulin-depend 98.8 9.4E-09 2E-13 99.3 7.5 118 166-283 47-177 (187)
75 cd04040 C2D_Tricalbin-like C2 98.8 1.4E-08 3E-13 90.5 8.2 84 56-177 1-91 (115)
76 cd04046 C2_Calpain C2 domain p 98.8 1.6E-08 3.5E-13 91.9 8.4 81 54-175 3-90 (126)
77 cd04030 C2C_KIAA1228 C2 domain 98.8 1.2E-08 2.7E-13 92.5 7.5 90 50-177 12-116 (127)
78 cd04047 C2B_Copine C2 domain s 98.8 1.3E-08 2.9E-13 90.0 7.5 73 65-176 18-99 (110)
79 cd04043 C2_Munc13_fungal C2 do 98.8 1.6E-08 3.5E-13 91.6 8.3 84 55-176 2-94 (126)
80 cd08386 C2A_Synaptotagmin-7 C2 98.8 1.4E-08 3.1E-13 91.9 7.8 86 53-176 15-112 (125)
81 cd04049 C2_putative_Elicitor-r 98.8 1.5E-08 3.3E-13 91.6 7.8 86 54-178 1-97 (124)
82 cd08384 C2B_Rabphilin_Doc2 C2 98.8 1.3E-08 2.9E-13 93.2 7.4 87 50-174 9-108 (133)
83 cd04033 C2_NEDD4_NEDD4L C2 dom 98.8 2E-08 4.4E-13 91.9 8.5 86 55-179 1-99 (133)
84 cd04054 C2A_Rasal1_RasA4 C2 do 98.8 1.8E-08 3.9E-13 91.0 7.8 83 56-177 2-91 (121)
85 cd08404 C2B_Synaptotagmin-4 C2 98.8 1.4E-08 2.9E-13 93.7 7.1 84 53-174 14-110 (136)
86 cd04010 C2B_RasA3 C2 domain se 98.8 1.1E-08 2.5E-13 95.6 6.6 84 56-177 2-109 (148)
87 cd04021 C2_E3_ubiquitin_ligase 98.8 1.8E-08 3.9E-13 91.6 7.6 84 55-178 3-92 (125)
88 cd04022 C2A_MCTP_PRT_plant C2 98.8 1.3E-08 2.8E-13 92.6 6.6 82 56-176 2-94 (127)
89 cd08521 C2A_SLP C2 domain firs 98.8 1.8E-08 3.9E-13 90.8 7.3 90 49-176 9-112 (123)
90 cd04015 C2_plant_PLD C2 domain 98.7 2.8E-08 6.1E-13 94.1 8.5 85 67-193 57-141 (158)
91 cd08400 C2_Ras_p21A1 C2 domain 98.7 3.4E-08 7.4E-13 89.9 8.7 85 54-177 4-92 (126)
92 cd08406 C2B_Synaptotagmin-12 C 98.7 1.4E-08 3.1E-13 93.6 6.3 83 53-173 14-109 (136)
93 cd05022 S-100A13 S-100A13: S-1 98.7 2E-08 4.3E-13 85.6 6.6 65 218-282 9-76 (89)
94 KOG0044 Ca2+ sensor (EF-Hand s 98.7 1.3E-08 2.8E-13 98.5 6.0 98 184-282 67-176 (193)
95 cd04051 C2_SRC2_like C2 domain 98.7 1.4E-08 3.1E-13 91.9 6.0 101 56-193 2-116 (125)
96 cd08373 C2A_Ferlin C2 domain f 98.7 2.1E-08 4.6E-13 91.2 7.1 89 65-194 12-102 (127)
97 cd08389 C2A_Synaptotagmin-14_1 98.7 2.2E-08 4.8E-13 90.9 7.0 87 50-175 12-110 (124)
98 KOG0044 Ca2+ sensor (EF-Hand s 98.7 2.9E-08 6.3E-13 96.1 8.2 108 199-309 49-163 (193)
99 cd08394 C2A_Munc13 C2 domain f 98.7 3.9E-08 8.5E-13 89.0 8.5 84 54-179 2-89 (127)
100 cd08685 C2_RGS-like C2 domain 98.7 2.2E-08 4.8E-13 90.2 6.9 88 53-178 11-110 (119)
101 cd08403 C2B_Synaptotagmin-3-5- 98.7 2.8E-08 6.1E-13 91.2 7.1 84 52-173 12-108 (134)
102 cd08410 C2B_Synaptotagmin-17 C 98.7 3.2E-08 6.9E-13 91.2 7.2 81 54-172 14-107 (135)
103 cd08402 C2B_Synaptotagmin-1 C2 98.7 3.4E-08 7.3E-13 91.0 7.1 85 52-174 13-110 (136)
104 KOG0031 Myosin regulatory ligh 98.7 8.1E-08 1.7E-12 87.7 9.0 115 175-301 25-145 (171)
105 cd08405 C2B_Synaptotagmin-7 C2 98.7 3.8E-08 8.2E-13 90.7 6.8 87 51-175 12-111 (136)
106 cd04052 C2B_Tricalbin-like C2 98.7 2.8E-08 6E-13 88.4 5.5 93 65-198 10-102 (111)
107 cd08676 C2A_Munc13-like C2 dom 98.7 6.1E-08 1.3E-12 91.1 7.8 86 49-176 23-143 (153)
108 cd08691 C2_NEDL1-like C2 domai 98.7 7.3E-08 1.6E-12 89.0 8.1 83 56-178 3-107 (137)
109 cd08690 C2_Freud-1 C2 domain f 98.6 7.2E-08 1.5E-12 90.7 8.0 87 65-191 22-121 (155)
110 cd04027 C2B_Munc13 C2 domain s 98.6 7.6E-08 1.7E-12 87.7 8.0 80 56-175 3-100 (127)
111 cd08407 C2B_Synaptotagmin-13 C 98.6 5.4E-08 1.2E-12 90.0 6.9 86 51-174 12-112 (138)
112 cd08675 C2B_RasGAP C2 domain s 98.6 6.2E-08 1.3E-12 89.6 7.3 83 57-177 2-108 (137)
113 PLN03200 cellulose synthase-in 98.6 4.1E-08 8.9E-13 121.4 7.3 107 49-197 1975-2089(2102)
114 cd08390 C2A_Synaptotagmin-15-1 98.6 9.7E-08 2.1E-12 86.1 7.9 91 49-177 9-111 (123)
115 cd04026 C2_PKC_alpha_gamma C2 98.6 8.7E-08 1.9E-12 87.6 7.5 98 54-192 13-122 (131)
116 KOG0030 Myosin essential light 98.6 1.5E-07 3.3E-12 84.6 8.8 114 179-300 8-131 (152)
117 cd08408 C2B_Synaptotagmin-14_1 98.6 7.4E-08 1.6E-12 89.1 7.0 90 47-174 8-111 (138)
118 cd05027 S-100B S-100B: S-100B 98.6 1.2E-07 2.7E-12 80.7 7.4 64 219-282 10-80 (88)
119 cd04035 C2A_Rabphilin_Doc2 C2 98.6 1.4E-07 3E-12 85.2 7.9 92 48-178 9-114 (123)
120 KOG0037 Ca2+-binding protein, 98.5 2.5E-07 5.5E-12 89.5 8.6 131 161-308 65-205 (221)
121 cd04017 C2D_Ferlin C2 domain f 98.5 3.1E-07 6.7E-12 84.5 8.4 78 56-172 3-96 (135)
122 cd00276 C2B_Synaptotagmin C2 d 98.5 2.2E-07 4.9E-12 84.8 7.1 99 53-193 13-124 (134)
123 cd08409 C2B_Synaptotagmin-15 C 98.5 3.1E-07 6.7E-12 84.9 7.6 85 52-174 13-109 (137)
124 cd08692 C2B_Tac2-N C2 domain s 98.5 3.1E-07 6.7E-12 84.2 7.1 85 52-174 12-109 (135)
125 cd05026 S-100Z S-100Z: S-100Z 98.5 3.9E-07 8.5E-12 78.5 7.2 64 219-282 12-82 (93)
126 cd05031 S-100A10_like S-100A10 98.5 4.4E-07 9.6E-12 78.2 7.1 64 219-282 10-80 (94)
127 smart00027 EH Eps15 homology d 98.4 8E-07 1.7E-11 76.9 8.2 67 214-282 7-73 (96)
128 cd05029 S-100A6 S-100A6: S-100 98.4 6E-07 1.3E-11 76.4 7.1 64 219-282 12-80 (88)
129 PF13833 EF-hand_8: EF-hand do 98.4 5.4E-07 1.2E-11 69.1 6.2 52 230-281 1-53 (54)
130 KOG0034 Ca2+/calmodulin-depend 98.4 7.4E-07 1.6E-11 86.2 8.5 129 176-309 27-163 (187)
131 cd00052 EH Eps15 homology doma 98.4 7E-07 1.5E-11 71.2 6.9 60 220-281 2-61 (67)
132 cd05025 S-100A1 S-100A1: S-100 98.4 8.2E-07 1.8E-11 76.2 7.5 64 219-282 11-81 (92)
133 KOG0036 Predicted mitochondria 98.4 1.4E-06 3E-11 91.3 10.5 94 184-283 54-148 (463)
134 KOG4223 Reticulocalbin, calume 98.4 4.6E-07 9.9E-12 92.5 6.3 128 176-309 70-216 (325)
135 cd00051 EFh EF-hand, calcium b 98.4 1.1E-06 2.3E-11 67.7 6.8 61 219-279 2-62 (63)
136 PLN03008 Phospholipase D delta 98.4 4.8E-07 1E-11 103.3 6.3 85 65-192 74-159 (868)
137 cd00213 S-100 S-100: S-100 dom 98.3 1.4E-06 3.1E-11 73.9 7.5 65 218-282 9-80 (88)
138 KOG0037 Ca2+-binding protein, 98.3 2.7E-06 5.8E-11 82.5 9.5 108 184-304 60-171 (221)
139 COG5038 Ca2+-dependent lipid-b 98.3 7.5E-07 1.6E-11 103.4 6.8 86 53-176 1039-1131(1227)
140 KOG1028 Ca2+-dependent phospho 98.3 8.5E-07 1.8E-11 96.7 6.8 84 54-175 167-261 (421)
141 cd00275 C2_PLC_like C2 domain 98.3 1.9E-06 4.1E-11 78.0 7.5 82 55-175 3-99 (128)
142 KOG0036 Predicted mitochondria 98.3 1.5E-06 3.3E-11 90.9 6.6 147 184-343 17-192 (463)
143 cd05023 S-100A11 S-100A11: S-1 98.2 2.9E-06 6.3E-11 72.4 7.1 65 218-282 10-81 (89)
144 PF00168 C2: C2 domain; Inter 98.2 1.5E-06 3.2E-11 72.0 5.1 75 56-168 1-84 (85)
145 cd00252 SPARC_EC SPARC_EC; ext 98.2 3.5E-06 7.6E-11 75.4 7.1 58 218-279 49-106 (116)
146 cd04013 C2_SynGAP_like C2 doma 98.2 4.5E-06 9.8E-11 77.8 7.7 104 52-196 9-118 (146)
147 KOG0038 Ca2+-binding kinase in 98.1 2.2E-06 4.7E-11 77.6 4.3 101 209-309 63-165 (189)
148 KOG4223 Reticulocalbin, calume 98.1 1.9E-06 4.1E-11 88.0 4.1 124 154-277 164-301 (325)
149 cd08383 C2A_RasGAP C2 domain ( 98.1 8.4E-06 1.8E-10 72.6 7.6 78 56-174 2-85 (117)
150 KOG0031 Myosin regulatory ligh 98.1 1.4E-05 3.1E-10 73.3 8.8 85 216-308 31-116 (171)
151 cd08374 C2F_Ferlin C2 domain s 98.1 1E-05 2.2E-10 74.2 7.1 73 67-177 24-123 (133)
152 KOG0038 Ca2+-binding kinase in 98.0 1.4E-05 3E-10 72.5 7.3 114 167-283 53-179 (189)
153 KOG1327 Copine [Signal transdu 98.0 9.9E-06 2.2E-10 88.5 7.0 111 22-175 106-234 (529)
154 PF00036 EF-hand_1: EF hand; 98.0 7.1E-06 1.5E-10 54.7 3.2 28 254-281 1-28 (29)
155 PF13499 EF-hand_7: EF-hand do 98.0 1E-05 2.2E-10 64.5 4.7 60 184-243 3-66 (66)
156 cd05030 calgranulins Calgranul 97.9 2.7E-05 5.9E-10 66.3 6.3 64 219-282 10-80 (88)
157 smart00239 C2 Protein kinase C 97.9 5.5E-05 1.2E-09 64.0 8.3 84 56-177 2-94 (101)
158 PF14658 EF-hand_9: EF-hand do 97.8 7.5E-05 1.6E-09 59.4 6.4 62 221-282 2-65 (66)
159 PF00036 EF-hand_1: EF hand; 97.7 3.2E-05 7E-10 51.6 3.0 27 219-245 2-28 (29)
160 PLN02964 phosphatidylserine de 97.7 0.00011 2.4E-09 83.4 9.0 87 214-308 140-230 (644)
161 cd00030 C2 C2 domain. The C2 d 97.7 0.00015 3.2E-09 60.8 7.3 82 57-176 2-90 (102)
162 KOG0041 Predicted Ca2+-binding 97.6 0.00012 2.6E-09 70.0 6.9 64 219-282 101-164 (244)
163 KOG0046 Ca2+-binding actin-bun 97.6 0.00026 5.6E-09 76.4 8.9 132 210-358 12-147 (627)
164 PLN02952 phosphoinositide phos 97.5 0.00018 4E-09 80.9 7.4 86 53-176 469-571 (599)
165 PLN02223 phosphoinositide phos 97.5 0.00022 4.8E-09 78.8 7.1 85 53-175 408-508 (537)
166 KOG0030 Myosin essential light 97.4 0.00052 1.1E-08 62.2 7.2 60 219-279 90-149 (152)
167 KOG1028 Ca2+-dependent phospho 97.3 0.00036 7.8E-09 76.4 6.9 83 53-173 297-392 (421)
168 PRK12309 transaldolase/EF-hand 97.3 0.00044 9.5E-09 74.6 7.3 50 219-281 336-385 (391)
169 smart00027 EH Eps15 homology d 97.3 0.00019 4.1E-09 62.0 3.6 64 177-246 5-73 (96)
170 cd05022 S-100A13 S-100A13: S-1 97.3 0.00026 5.6E-09 60.4 4.3 59 184-246 11-76 (89)
171 COG5038 Ca2+-dependent lipid-b 97.2 0.00058 1.3E-08 80.1 6.9 85 53-176 435-528 (1227)
172 PF13405 EF-hand_6: EF-hand do 97.2 0.00037 8.1E-09 47.0 3.2 26 255-280 2-27 (31)
173 PF14658 EF-hand_9: EF-hand do 97.2 0.00062 1.3E-08 54.2 4.9 58 185-245 2-64 (66)
174 PF14788 EF-hand_10: EF hand; 97.2 0.001 2.3E-08 50.0 5.7 50 233-282 1-50 (51)
175 cd05024 S-100A10 S-100A10: A s 97.2 0.0015 3.3E-08 55.6 7.3 63 219-282 10-77 (91)
176 cd05027 S-100B S-100B: S-100B 97.1 0.00065 1.4E-08 57.8 5.0 59 184-246 11-80 (88)
177 KOG1011 Neurotransmitter relea 97.1 0.00044 9.5E-09 75.9 4.8 82 54-175 295-394 (1283)
178 PLN02230 phosphoinositide phos 97.1 0.00069 1.5E-08 76.3 6.5 84 54-175 469-569 (598)
179 cd00052 EH Eps15 homology doma 97.1 0.00061 1.3E-08 54.0 4.4 55 185-245 3-61 (67)
180 PF13202 EF-hand_5: EF hand; P 97.1 0.00046 9.9E-09 44.3 2.7 23 256-278 2-24 (25)
181 PF13405 EF-hand_6: EF-hand do 97.1 0.00054 1.2E-08 46.2 3.0 29 219-247 2-31 (31)
182 PLN02270 phospholipase D alpha 97.1 0.0012 2.6E-08 76.1 7.5 87 66-194 45-132 (808)
183 cd05026 S-100Z S-100Z: S-100Z 97.0 0.00085 1.8E-08 57.7 4.6 60 184-246 13-82 (93)
184 KOG0169 Phosphoinositide-speci 97.0 0.0011 2.4E-08 75.0 6.4 84 55-175 617-715 (746)
185 KOG1328 Synaptic vesicle prote 97.0 0.00027 6E-09 78.6 1.5 84 54-175 947-1047(1103)
186 KOG1031 Predicted Ca2+-depende 97.0 0.00087 1.9E-08 72.8 4.9 84 54-176 3-97 (1169)
187 PF13833 EF-hand_8: EF-hand do 96.9 0.0013 2.8E-08 50.2 4.6 48 195-245 2-53 (54)
188 PLN02222 phosphoinositide phos 96.9 0.0018 4E-08 72.8 7.4 85 53-175 451-552 (581)
189 PF12763 EF-hand_4: Cytoskelet 96.9 0.0027 5.8E-08 55.8 6.9 65 213-280 6-70 (104)
190 PF13202 EF-hand_5: EF hand; P 96.8 0.001 2.2E-08 42.8 2.4 25 219-243 1-25 (25)
191 KOG0377 Protein serine/threoni 96.8 0.0026 5.5E-08 67.6 6.8 63 219-281 549-615 (631)
192 cd05031 S-100A10_like S-100A10 96.8 0.0014 2.9E-08 56.4 3.9 61 184-247 11-81 (94)
193 cd05025 S-100A1 S-100A1: S-100 96.8 0.002 4.4E-08 55.1 4.9 60 184-246 12-81 (92)
194 PLN02228 Phosphoinositide phos 96.7 0.0027 5.8E-08 71.3 6.5 85 53-175 430-532 (567)
195 cd05029 S-100A6 S-100A6: S-100 96.6 0.0023 5E-08 54.5 4.2 59 184-246 13-80 (88)
196 PF12588 PSDC: Phophatidylseri 96.6 0.0014 3E-08 60.5 2.8 49 379-427 69-122 (141)
197 cd00213 S-100 S-100: S-100 dom 96.4 0.0028 6E-08 53.6 3.5 60 184-246 11-80 (88)
198 KOG4251 Calcium binding protei 96.3 0.0034 7.5E-08 61.9 3.9 123 184-309 104-252 (362)
199 cd00252 SPARC_EC SPARC_EC; ext 96.3 0.0047 1E-07 55.3 4.5 55 184-243 51-106 (116)
200 cd00051 EFh EF-hand, calcium b 96.3 0.0071 1.5E-07 45.9 4.9 55 185-243 4-62 (63)
201 KOG2562 Protein phosphatase 2 96.2 0.0052 1.1E-07 66.0 4.7 94 187-283 284-381 (493)
202 KOG2643 Ca2+ binding protein, 96.2 0.0036 7.7E-08 66.7 3.3 97 184-282 321-454 (489)
203 KOG4666 Predicted phosphate ac 96.2 0.0096 2.1E-07 61.1 6.1 120 184-317 262-384 (412)
204 KOG1264 Phospholipase C [Lipid 96.0 0.016 3.4E-07 65.8 7.3 90 48-175 1055-1160(1267)
205 PF10591 SPARC_Ca_bdg: Secrete 96.0 0.0032 6.9E-08 56.2 1.5 59 217-277 54-112 (113)
206 cd05023 S-100A11 S-100A11: S-1 95.9 0.0093 2E-07 50.9 3.9 63 184-246 12-81 (89)
207 KOG0040 Ca2+-binding actin-bun 95.9 0.016 3.6E-07 69.3 6.9 95 184-279 2256-2359(2399)
208 cd08689 C2_fungal_Pkc1p C2 dom 95.7 0.028 6E-07 49.2 6.1 49 66-158 21-70 (109)
209 KOG2643 Ca2+ binding protein, 95.6 0.0068 1.5E-07 64.6 2.4 66 219-284 235-317 (489)
210 KOG2059 Ras GTPase-activating 95.6 0.016 3.4E-07 65.1 5.2 79 56-175 7-93 (800)
211 cd05030 calgranulins Calgranul 95.6 0.014 3E-07 49.6 3.8 63 184-246 11-80 (88)
212 smart00054 EFh EF-hand, calciu 95.2 0.022 4.7E-07 36.0 2.9 26 255-280 2-27 (29)
213 KOG0041 Predicted Ca2+-binding 95.0 0.044 9.6E-07 52.8 5.7 98 176-277 93-199 (244)
214 KOG4065 Uncharacterized conser 95.0 0.057 1.2E-06 47.5 5.7 59 220-278 70-142 (144)
215 KOG0377 Protein serine/threoni 94.8 0.068 1.5E-06 57.1 6.9 118 184-308 467-602 (631)
216 PF12763 EF-hand_4: Cytoskelet 94.6 0.038 8.2E-07 48.5 3.7 62 177-245 5-71 (104)
217 PLN02352 phospholipase D epsil 94.5 0.07 1.5E-06 61.7 6.6 96 52-194 8-115 (758)
218 KOG1326 Membrane-associated pr 93.9 0.047 1E-06 63.6 3.7 86 51-175 610-704 (1105)
219 KOG0040 Ca2+-binding actin-bun 93.8 0.25 5.5E-06 59.8 9.3 65 218-282 2254-2325(2399)
220 smart00054 EFh EF-hand, calciu 93.6 0.073 1.6E-06 33.4 2.8 27 219-245 2-28 (29)
221 KOG0751 Mitochondrial aspartat 92.9 0.48 1E-05 51.6 9.0 59 222-282 79-137 (694)
222 PRK12309 transaldolase/EF-hand 92.0 0.18 3.9E-06 54.6 4.6 48 184-245 337-385 (391)
223 KOG4251 Calcium binding protei 91.9 0.28 6.1E-06 48.8 5.4 95 184-278 239-342 (362)
224 PF09279 EF-hand_like: Phospho 90.9 0.35 7.7E-06 40.2 4.3 62 219-281 2-69 (83)
225 cd05024 S-100A10 S-100A10: A s 90.5 0.46 1E-05 40.6 4.7 30 217-246 48-77 (91)
226 KOG0751 Mitochondrial aspartat 90.5 0.57 1.2E-05 51.0 6.4 47 232-282 162-208 (694)
227 KOG4666 Predicted phosphate ac 89.8 0.54 1.2E-05 48.7 5.3 63 219-281 261-324 (412)
228 PF05042 Caleosin: Caleosin re 88.9 1.5 3.2E-05 41.9 7.1 33 250-282 93-125 (174)
229 KOG4578 Uncharacterized conser 88.0 0.32 6.8E-06 50.3 2.2 69 218-286 334-403 (421)
230 KOG1955 Ral-GTPase effector RA 87.3 1.2 2.7E-05 48.4 6.2 68 212-281 226-293 (737)
231 KOG3555 Ca2+-binding proteogly 87.1 1.3 2.7E-05 46.4 5.9 60 219-282 252-311 (434)
232 PF10591 SPARC_Ca_bdg: Secrete 85.9 0.61 1.3E-05 41.6 2.7 51 185-241 58-112 (113)
233 KOG2059 Ras GTPase-activating 85.8 1.3 2.8E-05 50.4 5.7 95 44-176 106-240 (800)
234 PF14788 EF-hand_10: EF hand; 85.8 1.4 3.1E-05 33.3 4.1 43 200-246 8-50 (51)
235 KOG1328 Synaptic vesicle prote 85.1 0.45 9.7E-06 54.0 1.7 49 127-175 186-270 (1103)
236 KOG0169 Phosphoinositide-speci 83.4 2.6 5.7E-05 48.6 6.8 95 184-283 139-234 (746)
237 KOG1013 Synaptic vesicle prote 83.1 0.36 7.9E-06 50.2 -0.1 82 55-174 94-189 (362)
238 PRK09439 PTS system glucose-sp 82.9 2.4 5.2E-05 40.6 5.4 52 475-549 21-72 (169)
239 KOG2562 Protein phosphatase 2 81.8 2.6 5.7E-05 45.9 5.7 90 184-277 314-420 (493)
240 KOG0046 Ca2+-binding actin-bun 79.2 2.6 5.6E-05 46.5 4.7 69 176-246 13-86 (627)
241 KOG1029 Endocytic adaptor prot 79.2 2 4.3E-05 49.3 3.9 60 219-280 197-256 (1118)
242 KOG0905 Phosphoinositide 3-kin 77.3 2 4.2E-05 51.6 3.3 82 54-175 1524-1621(1639)
243 cd00210 PTS_IIA_glc PTS_IIA, P 76.8 3.6 7.8E-05 37.3 4.2 51 477-550 1-51 (124)
244 KOG4065 Uncharacterized conser 76.8 3.6 7.8E-05 36.5 4.0 73 169-242 56-142 (144)
245 KOG1013 Synaptic vesicle prote 75.2 5.2 0.00011 41.9 5.4 66 65-168 251-322 (362)
246 KOG4347 GTPase-activating prot 74.0 3.3 7.1E-05 46.9 3.8 58 217-275 555-612 (671)
247 KOG1326 Membrane-associated pr 73.8 2.4 5.2E-05 50.1 2.8 67 66-171 225-300 (1105)
248 TIGR00830 PTBA PTS system, glu 70.4 6.3 0.00014 35.6 4.2 50 477-549 1-50 (121)
249 KOG1707 Predicted Ras related/ 70.0 10 0.00023 42.7 6.6 30 255-284 317-346 (625)
250 KOG3866 DNA-binding protein of 69.5 9.3 0.0002 39.6 5.6 61 220-280 247-323 (442)
251 PF00358 PTS_EIIA_1: phosphoen 67.4 6.3 0.00014 36.2 3.6 52 475-549 3-54 (132)
252 KOG0042 Glycerol-3-phosphate d 64.7 12 0.00026 42.0 5.7 71 213-283 589-659 (680)
253 KOG1955 Ral-GTPase effector RA 64.4 6.7 0.00015 43.0 3.6 56 184-245 234-293 (737)
254 KOG2243 Ca2+ release channel ( 62.3 11 0.00025 45.8 5.1 60 221-281 4061-4120(5019)
255 KOG1011 Neurotransmitter relea 60.0 26 0.00057 39.8 7.2 106 55-198 1126-1247(1283)
256 KOG1265 Phospholipase C [Lipid 59.0 16 0.00034 43.1 5.5 82 52-175 701-794 (1189)
257 PF05517 p25-alpha: p25-alpha 56.3 32 0.00069 32.3 6.3 61 223-283 8-71 (154)
258 COG0688 Psd Phosphatidylserine 52.7 11 0.00024 38.1 2.8 37 453-492 63-99 (239)
259 PRK10255 PTS system N-acetyl g 48.0 30 0.00065 40.2 5.6 53 474-549 498-550 (648)
260 KOG1327 Copine [Signal transdu 47.1 18 0.00038 40.6 3.4 51 127-177 50-104 (529)
261 PF05042 Caleosin: Caleosin re 46.7 52 0.0011 31.6 6.0 60 219-279 98-164 (174)
262 KOG1029 Endocytic adaptor prot 46.6 19 0.0004 41.8 3.5 59 184-245 198-257 (1118)
263 PLN02952 phosphoinositide phos 45.4 43 0.00093 38.5 6.2 54 230-284 13-68 (599)
264 KOG0035 Ca2+-binding actin-bun 42.8 56 0.0012 39.0 6.7 70 216-285 746-820 (890)
265 PF09279 EF-hand_like: Phospho 38.4 65 0.0014 26.4 4.8 45 254-301 1-45 (83)
266 PF09069 EF-hand_3: EF-hand; 36.9 1.6E+02 0.0035 25.1 7.0 62 219-283 5-77 (90)
267 PRK05889 putative acetyl-CoA c 36.6 1.7E+02 0.0036 23.3 6.8 25 533-557 38-62 (71)
268 KOG4578 Uncharacterized conser 35.7 27 0.00058 36.7 2.4 54 186-245 338-398 (421)
269 COG2190 NagE Phosphotransferas 34.3 70 0.0015 30.2 4.8 52 474-548 5-56 (156)
270 PF08726 EFhand_Ca_insen: Ca2+ 34.2 36 0.00077 27.6 2.4 29 250-279 3-31 (69)
271 cd06850 biotinyl_domain The bi 34.1 1.6E+02 0.0035 22.3 6.3 23 534-556 36-58 (67)
272 PF12174 RST: RCD1-SRO-TAF4 (R 33.9 48 0.001 26.9 3.1 47 233-282 8-54 (70)
273 PRK09824 PTS system beta-gluco 29.5 56 0.0012 38.0 4.0 51 476-549 480-530 (627)
274 KOG3866 DNA-binding protein of 28.1 86 0.0019 32.7 4.6 55 221-281 300-354 (442)
275 PRK06549 acetyl-CoA carboxylas 27.7 3.4E+02 0.0074 24.8 8.0 61 473-556 60-120 (130)
276 KOG1265 Phospholipase C [Lipid 27.5 3.3E+02 0.0072 32.8 9.4 61 219-279 223-297 (1189)
277 TIGR01995 PTS-II-ABC-beta PTS 27.0 75 0.0016 36.9 4.5 51 476-549 464-514 (610)
278 KOG2060 Rab3 effector RIM1 and 26.5 53 0.0011 35.3 2.8 82 54-175 269-364 (405)
279 KOG0998 Synaptic vesicle prote 23.5 33 0.00073 41.2 0.8 62 219-282 285-346 (847)
280 KOG4004 Matricellular protein 23.3 32 0.00069 33.6 0.4 54 223-279 193-248 (259)
281 PRK05641 putative acetyl-CoA c 22.7 5.7E+02 0.012 24.0 8.7 61 473-556 83-143 (153)
282 PF14513 DAG_kinase_N: Diacylg 22.3 1.8E+02 0.004 26.9 5.2 62 232-299 6-75 (138)
283 PF15627 CEP76-C2: CEP76 C2 do 22.3 2.6E+02 0.0057 26.4 6.3 88 55-180 10-120 (156)
284 KOG0035 Ca2+-binding actin-bun 20.9 1.7E+02 0.0037 35.2 5.7 92 184-277 750-848 (890)
285 KOG3555 Ca2+-binding proteogly 20.4 1E+02 0.0022 32.8 3.4 57 185-245 254-310 (434)
No 1
>PLN02964 phosphatidylserine decarboxylase
Probab=100.00 E-value=6.6e-126 Score=1049.15 Aligned_cols=560 Identities=74% Similarity=1.186 Sum_probs=527.7
Q ss_pred CCCCCCCCCchhhhhhHhhhcccccchhhc----cCCCCCCCCCccccccccccceeeEEEEEEeeeeeccCCCceEEEe
Q 007303 1 MGHGSSKEDESVSRTSRFRKKFHLHRERRR----SRGNGSNSGSHHHNRVLNEEDFAGIALLTLISAEMKFKDKWLACVS 76 (608)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~d~~~~~~~ 76 (608)
|||++|++++ +||++++++|++-.|.++| ++|+.+| +.+++.+++|+|+|||+|||++|+|.++|||++|++
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (644)
T PLN02964 1 MGNGNSREAK-ESRRSKLRQKLQKFRIRRRHLRCSRGSSSG---SVSQRAVSAEDFSGIALLTLVGAEMKFKDKWLACVS 76 (644)
T ss_pred CCCCCCCccc-cCCcchHHHHHHHHHHHHHhhhhccCCCCc---cccccceecccccCeEEEEeehhhhccCCcEEEEEE
Confidence 9999999776 8999999999998655543 4444444 455899999999999999999999999999999999
Q ss_pred cCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeeccCCCcceeeEEeec
Q 007303 77 LGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFET 156 (608)
Q Consensus 77 ~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~ 156 (608)
.|++++||.+.+ +|+||+||++.++.++.++..-.++.||||
T Consensus 77 ~g~~~f~t~~~~--------------------------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (644)
T PLN02964 77 FGEQTFRTETSD--------------------------------------STDKPVWNSEKKLLLEKNGPHLARISVFET 118 (644)
T ss_pred ecceeeeecccc--------------------------------------ccCCcccchhhceEeccCCcceEEEEEEec
Confidence 999999999999 999999999999999888666679999999
Q ss_pred cccccCCcCcceeeecccccccCcchh-hhhhhccCCCCCchhhHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCccc
Q 007303 157 NRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLS 235 (608)
Q Consensus 157 D~~s~~D~iG~~~i~l~elLs~ee~~~-~eiF~~~D~d~dGkIl~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is 235 (608)
++++.+|++|.+++++.++..+ +..+ .+.|+.+|++++|++++.++..++...|++.+..+++++|+.+|.|++|.|+
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~k-qi~elkeaF~lfD~dgdG~iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Id 197 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQ-EPESACESFDLLDPSSSNKVVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLS 197 (644)
T ss_pred CCCCHHHhhhheeecHhhccHH-HHHHHHHHHHHHCCCCCCcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEc
Confidence 9999999999999999996654 4445 8899999999999999999999874477777777899999999999999999
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCccccccccc
Q 007303 236 FKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCF 315 (608)
Q Consensus 236 ~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di~h~a~c~ 315 (608)
++||..++..++...++++++++|+.+|+|++|+|+++||.+++..+.+..+.+..||+|.+.++..|+.++|+|+|+|+
T Consensus 198 fdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~~~c~ 277 (644)
T PLN02964 198 FSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHMTLCF 277 (644)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHHHHhh
Confidence 99999999998888889999999999999999999999999999998888899999999999999999999999999999
Q ss_pred ccCCcceeeeccccccchhhHHHHHHhhccccccccccCCCCCCce-EEEEEeccCCceeeeeehhhhhhhhhhhhcccc
Q 007303 316 DEGTGNQVMTGGFLTDKQASNVWMFKLSEWGHFSSYDVGLNSGSRA-HILVFDRRTKRLVEELIDVKIVMSMRAIYQSKI 394 (608)
Q Consensus 316 ~~~~~~~~~~~gfv~~~~A~~kw~~k~l~~~~~~~y~~~~~~~~~~-~i~~~~r~~~~~~~e~~~~~~~~~~~~~y~~~~ 394 (608)
||++++++|++||+|++||+++|++|+++|++||+|++|++.|+++ +|+|+||.||+++||++++++.++|+|+|++++
T Consensus 278 ~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~~~~~y~~g~~~~~~~~~i~~~dR~t~~~~~E~v~~~~~~~~~~lY~~~~ 357 (644)
T PLN02964 278 DEGTGNQVMTGGFLTDKQASYGWMFKLSEWAHLSTYDVGLNTGSSASHILVFDRKSKRLVEELIDSKIVLSMRAIYQSKI 357 (644)
T ss_pred cccccceeeccCccchhHHhHHHHHHHHHHHhccccccccccCCCcCceEEEECCCCcEEEEEeeeeehhhHHHHhcCch
Confidence 9999999999999999999999999999999999999999988887 999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHHHhhCCccccccHHHHHHHhccCCCccccCCCCCCcCCHHHHhccccCCCCccCCCCCCC
Q 007303 395 GLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMERE 474 (608)
Q Consensus 395 g~~~l~~~~~~~l~~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~ 474 (608)
|+.+|++.++++|+.+|+++|+++|||+|+..|++||+.|+++|||+|+++|+++|+||||||+|+|||++|||+.++++
T Consensus 358 G~~~l~~~~~~~l~~~S~~~G~~~dsp~S~~~I~~Fi~~~~~~id~~E~~~p~~~y~SfNdFFtRkLKp~aRPi~~~~~~ 437 (644)
T PLN02964 358 GLRLMDQGAKEILQRLSEKQGKKMNSVESAQDIPKFLEFFKDQINMDEVKYPLEHFKTFNEFFIRELKPGARPIACMDND 437 (644)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHcCChhhHHHHHHHHHHhhcCcCHHHhhcCcccCCCHHHcceecCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999987789999999999999999999999999999999998889
Q ss_pred ceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCc
Q 007303 475 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGC 554 (608)
Q Consensus 475 ~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~ 554 (608)
.++||||||++.+|+.|+++..|||||++|||.+|||++.+|++|.||+++++||||+||||||+|++|+|.+.++|||+
T Consensus 438 ~~iVSPaDg~v~~~~~i~~~~~~~IKG~~Ysl~~LLg~~~~a~~f~gG~~~i~rLsP~DYHR~HsPv~G~v~~~~~I~G~ 517 (644)
T PLN02964 438 DVAVCAADCRLMAFQSVDDSTRFWIKGRKFSIKGLLGKKVHSDAFLDGSLVIFRLAPQDYHRFHVPVSGVIEKFVDVPGS 517 (644)
T ss_pred CEEEECCCceeEEeeeecCCcEEEECCCcccHHHHcCCchhHHhcCCCEEEEEEECCceeceeecCCCCEEEEEEEECCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccChhhhcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 555 LYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 555 ~~~v~p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
||||||+|++..++++|++|+|++++++|+++|+|++|+|||++||+|.
T Consensus 518 l~sVnp~al~~~~~~~f~~NeR~v~~iet~~~G~V~~v~VGA~~VgsI~ 566 (644)
T PLN02964 518 LYTVNPIAVNSKYCNVFTENKRAVCIISTAEFGKVAFVAIGATMVGSIT 566 (644)
T ss_pred eEecChhhhcccccchhhcCeeEEEEEEcCCCCEEEEEEEeeeEeeEEE
Confidence 9999999997656899999999999999999999999999999999985
No 2
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=4.7e-100 Score=801.88 Aligned_cols=555 Identities=57% Similarity=0.892 Sum_probs=461.2
Q ss_pred CCCCCCCCCchhhhhhHhhhcccccchhhccC----------CCCCCCCCcccccccc--------------ccceeeEE
Q 007303 1 MGHGSSKEDESVSRTSRFRKKFHLHRERRRSR----------GNGSNSGSHHHNRVLN--------------EEDFAGIA 56 (608)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--------------~~~~~~~~ 56 (608)
||++++--...++||..-|.+..--+.++|.. +...| ...++..+ ++|+.||+
T Consensus 206 M~n~S~s~~~~E~rr~e~~~~~~sf~~err~sip~~~~~~sis~~~g---l~~~~s~s~~~~~e~~~~~~~~~dd~~gi~ 282 (975)
T KOG2419|consen 206 MGNGSNSVEGKESRRSEDRNKSQSFRTERRYSIPNDTIFDSISEVVG---LNDQRSVSLNDFEEADHPNVHDADDFTGIA 282 (975)
T ss_pred hcCcccccchhhhhhhhhhccccceeecccccCCccccccccccccc---ccccccccccccccccCccccccchhhhhH
Confidence 89986666666999999888766533333221 11122 12234444 88999999
Q ss_pred EEEEeeeeec----------cCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 57 LLTLISAEMK----------FKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 57 ~~~~~~a~~~----------~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
++++|+|.|. ++|.|++|.+.+++.+||+..+
T Consensus 283 ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~-------------------------------------- 324 (975)
T KOG2419|consen 283 LLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISD-------------------------------------- 324 (975)
T ss_pred HHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhc--------------------------------------
Confidence 9999999975 9999999999999999999999
Q ss_pred CCCCCccccccceeeccC-CCcceeeEEeeccccccCCcCcceeee--cccccccCcchhhhhhhccCCCCCc-------
Q 007303 127 STDKPIWNSEKKLLLETN-GPHVARISVFETNRLSKSNLEGYCEVD--LLEFLTKDSDADSEVFDLLDPSSSN------- 196 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~-~~~~l~~~v~D~D~~s~~D~iG~~~i~--l~elLs~ee~~~~eiF~~~D~d~dG------- 196 (608)
.+.+|.|||. .+....- ..+.+.+.+.+++...-+|.+....+. ...+...++......|...++..+.
T Consensus 325 ~~e~piyNe~-~~E~~~Fqsn~~l~~kiv~~~~~~lndS~A~f~vq~~~sn~~~~~pE~~~~sfnl~~~a~sn~~a~r~~ 403 (975)
T KOG2419|consen 325 DTEKPIYNED-EREDSDFQSNRYLGNKIVGYCELDLNDSYANFVVQRAKSNFFISEPESTCKSFNLLDPASSNLPALRNR 403 (975)
T ss_pred cccccccccc-ccccccchhhHHHhhhccccccccccchhhhhhhhhhhccccccCccccceEEEeecCCcccchhhhhc
Confidence 9999999993 1111111 234577777777777666644432111 0010111111113345554443222
Q ss_pred ----------hh---hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHH---------
Q 007303 197 ----------KI---VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANK--------- 254 (608)
Q Consensus 197 ----------kI---l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~ee--------- 254 (608)
.+ ++..+.......+.+.+.-+..+++..+|.+.++.+++.+|.++...++..+...+
T Consensus 404 ~S~T~~em~~~~~~~vG~~~~s~sie~~v~~~~c~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~ 483 (975)
T KOG2419|consen 404 LSKTNYEMDPFIVIVVGSRFFSCSIEDPVETEECFAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNE 483 (975)
T ss_pred cCccccccCchhHhhhhhHHhhhhhhccccchhhhhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhccc
Confidence 11 44444444445566666666788999999999999999999998877665444333
Q ss_pred HHHHHHHhcCCCC-----------------------cccCHHHHHHHHHh-------------hcccC------------
Q 007303 255 KEELFKAADKNGD-----------------------GVVSVDELAALLAL-------------QQEKE------------ 286 (608)
Q Consensus 255 l~~~F~~~D~d~d-----------------------G~Is~eEf~~~l~~-------------~~e~~------------ 286 (608)
...+|..+|.+++ |.++.+|...+++. +.+..
T Consensus 484 k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~~~vtVDe~v~ll~~~i~~V~~~~er~tq~~q~p~~n~~n~~~~~ 563 (975)
T KOG2419|consen 484 KEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSFGVVTVDELVALLALDIIQVMLYLERLTQQEQEPIINHFNKSAWA 563 (975)
T ss_pred chhheehhhccCCcccCccccchhhhccccccccccCeeEHHHHHHHHHHHHHHHHHHHHHhhhccccchhhcccCCCCC
Confidence 5788999999999 99999999988872 22222
Q ss_pred ----------------------cccCCchhHHHhHhhh-cccCcccccccccccCCcceeeeccccccchhhHHHHHHhh
Q 007303 287 ----------------------PLMNCCPVCGETLEVA-DMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLS 343 (608)
Q Consensus 287 ----------------------~~~~~~~~~~~~l~~~-D~~~di~h~a~c~~~~~~~~~~~~gfv~~~~A~~kw~~k~l 343 (608)
..++.||+|.+.+... ++.+.++|||+|++|+++|++|+++|++..||+++||+|++
T Consensus 564 ~Qs~~r~q~~E~~qs~~~~~~~~~i~nCP~C~~~~~~~~~~~~a~iH~a~C~~~~~~~~~m~~syvs~~qAs~rWfsK~~ 643 (975)
T KOG2419|consen 564 GQSITRSQLVEGLQSWRKSTNFKRIWNCPVCGEALQPTRDKLNAMIHMALCFDEGTGNQTMTGSYVSDRQASYRWFSKLS 643 (975)
T ss_pred ccccchhhhhhhhhcccccccceeecCCccHHhhhccchhhhhhheeeeeeeccccCceeeeccccchhhHHHHHHHHHH
Confidence 2356999999997654 88888999999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCceEEEEEeccCCceeeeeehhhhhhhhhhhhcccccccccchhHHHHHHHHHHHHHHhhCCccc
Q 007303 344 EWGHFSSYDVGLNSGSRAHILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVES 423 (608)
Q Consensus 344 ~~~~~~~y~~~~~~~~~~~i~~~~r~~~~~~~e~~~~~~~~~~~~~y~~~~g~~~l~~~~~~~l~~~s~~~g~~~~s~~S 423 (608)
+|++||+|++| +++|+|+|+||+||+++||+++.+++++||+||++.+|+.+++..++.+|+++|.++|++|||++|
T Consensus 644 ~k~~ygty~vG---Ss~a~ilVqdR~Tg~ivEEki~a~V~lgmR~iY~gk~~~r~~~~k~k~iL~~Ls~kQGkK~dS~~S 720 (975)
T KOG2419|consen 644 EKTHYGTYDVG---SSAANILVQDRKTGRIVEEKIDAKVVLGMRAIYQGKIGLRLMDQKAKEILQTLSEKQGKKMDSVES 720 (975)
T ss_pred HHhhccceecC---CCcceEEEEecccchHHHHhhcceeeeehhhhhcccccchhhhhhHHHHHHHHHHHhccccCchhh
Confidence 99999999999 567799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhccCCCccccCCCCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCcc
Q 007303 424 SKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQK 503 (608)
Q Consensus 424 ~~~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ 503 (608)
++.|++||++| .+||+|...|+.+|+||||||+|+||||+||++.+++++++|||||||+++|+.|++.+.|||||..
T Consensus 721 ak~I~pFi~Ff--~lnm~ev~~p~~~FKTFNEFFyRkLKPGsRp~a~~nn~dIlvspADsR~~af~~Ie~st~~WIKGrk 798 (975)
T KOG2419|consen 721 AKQIPPFIEFF--KLNMAEVKYPLKHFKTFNEFFYRKLKPGSRPIACMNNKDILVSPADSRLMAFQSIEDSTRFWIKGRK 798 (975)
T ss_pred hhhcchHHhhh--hcchhhhcCccccchhHHHHHHHhcCCCCcccCCCCCCceeecccccceEeeeeecccceEEEeccE
Confidence 99999999998 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEee
Q 007303 504 FSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIIST 583 (608)
Q Consensus 504 ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~~~~t 583 (608)
|||+.|||...-+++|.+|+.+|+||+|+||||||+||+|+|.+..++.|.||+|||+|+++ |.+||.||.|+++.|++
T Consensus 799 Fsik~Llg~n~n~~~F~dgSi~IfRLAPQDYHRFHsPvnG~Igk~v~v~G~yYTVNPmAvrS-yldVFgEN~RviipIds 877 (975)
T KOG2419|consen 799 FSIKGLLGYNVNPEAFLDGSIVIFRLAPQDYHRFHSPVNGVIGKFVYVSGSYYTVNPMAVRS-YLDVFGENKRVIIPIDS 877 (975)
T ss_pred EehhHhhCCCCCchhccCCcEEEEEeccchhhhccCcccccccCceEecceEEEechHHHHh-hhhhhcCceEEEEEecc
Confidence 99999999888999999999999999999999999999999999999999999999999986 79999999999999999
Q ss_pred cCeeeEEEEecccccccccc
Q 007303 584 AHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 584 ~~~G~v~~v~VGa~~vg~~~ 603 (608)
.+||+|++|+||||||||+.
T Consensus 878 ~eFGKv~~VaiGAmMVGSi~ 897 (975)
T KOG2419|consen 878 AEFGKVAFVAIGAMMVGSIL 897 (975)
T ss_pred hhhccEEEEeecceeeeeEE
Confidence 99999999999999999974
No 3
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=1.1e-59 Score=483.58 Aligned_cols=232 Identities=38% Similarity=0.619 Sum_probs=218.2
Q ss_pred EEEEeccCCceeeeeehhhhhhhhhhhhcccccccccchhHHHHHHHHHHHHHHhhCCccccccHHHHHHHhccCCCccc
Q 007303 363 ILVFDRRTKRLVEELIDVKIVMSMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSVESSKEIPKFVNFFKDQINLAD 442 (608)
Q Consensus 363 i~~~~r~~~~~~~e~~~~~~~~~~~~~y~~~~g~~~l~~~~~~~l~~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~e 442 (608)
|+|+||.||++++|++++.. .++|+|+++.||.+|+.... -+.+|+++|+++++|.|+..|++|++.| +|||+|
T Consensus 2 ~~~~~r~~~~~~~e~~~~~~--~~~~~y~~~~gr~~l~~l~~--~~~~S~~~G~~~~~~~s~~~I~~f~~~~--~id~~e 75 (297)
T PRK00723 2 IKYYNRKTKKYEIEKVAGEK--YLKWLYSSPIGKNLLELLIK--KKIFSKIYGWYCDSRLSRKKIKPFVNDF--NIDMSE 75 (297)
T ss_pred cEEEECCCCceEEEeccHHH--HHHHHhcCHHHHHHHHHhcC--cHHHHHHHHHHhCCcchHHHHHHHHHHh--CCCHHH
Confidence 78999999999999888776 48999999999998876554 1469999999999999999999999998 899999
Q ss_pred cCCCCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCC
Q 007303 443 VKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG 522 (608)
Q Consensus 443 ~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G 522 (608)
++.|+++|+||||||+|+|||++|||+. ++.++||||||+|.+++.|+++..+||||++|||++|||++++|++|.+|
T Consensus 76 ~~~~~~~y~sfn~FFtR~lk~~~Rpi~~--~~~~ivSPaDg~v~~~~~i~~~~~~~vKG~~Ysl~~LLg~~~~a~~f~~G 153 (297)
T PRK00723 76 SEKPLSDFKSFNDFFTRKLKPEARPIDQ--GENILISPGDGRLLAYENIDLNSLFQVKGKTYSLKELLGDPELAKKYAGG 153 (297)
T ss_pred hhcChhhCCCHHHceeecCCCCCCCCCC--CCCEEEECCCcEEEEEEEEcCCCeEEEcCceeeHHHHcCChhHHHhcCCC
Confidence 9999999999999999999999999975 57889999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeecCeeeEEEEeccccccccc
Q 007303 523 TMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSR 602 (608)
Q Consensus 523 ~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~ 602 (608)
+++++||||.||||||+|++|+|.+.++|||+||+|||.++... +++|++|||++++++|+++|.|++|+|||++||+|
T Consensus 154 ~~~~~yLsp~DYHR~HsPv~G~v~~~~~i~G~l~~V~p~~l~~~-~~~f~~NeR~v~~i~t~~~G~v~~v~VGa~~VgsI 232 (297)
T PRK00723 154 TCLILRLCPTDYHRFHFPDSGICEETRKIKGHYYSVNPIALKKI-FELFCENKREWSIFKSENFGDILYVEVGATCVGSI 232 (297)
T ss_pred EEEEEEECCCeEEEEEccCCcEEEEEEEECCeEeecChHHhhcc-ccccccceeEEEEEEcCCCCEEEEEEEhheEeeEE
Confidence 99999999999999999999999999999999999999998754 79999999999999998899999999999999998
Q ss_pred c
Q 007303 603 F 603 (608)
Q Consensus 603 ~ 603 (608)
.
T Consensus 233 ~ 233 (297)
T PRK00723 233 I 233 (297)
T ss_pred E
Confidence 4
No 4
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=8.3e-52 Score=430.41 Aligned_cols=190 Identities=26% Similarity=0.384 Sum_probs=176.7
Q ss_pred HHHHHHHHHhhCCccccc----cHHHHHHHhccCCCccccCCCCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCc
Q 007303 408 KSISEKQGRKMNSVESSK----EIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 483 (608)
Q Consensus 408 ~~~s~~~g~~~~s~~S~~----~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg 483 (608)
+.+|+++|++++++.+++ .|++|++.| +|||+|+++|+++|+||||||+|+|||++|||+++ ++.++||||||
T Consensus 63 ~~~Srl~G~~a~~~~p~~lr~~ii~~fik~y--~Inl~E~~~~~~~Y~SfndFFtR~lk~~~RPi~~~-~~~~iVSPaDg 139 (353)
T PTZ00403 63 RTRSRITGSIFNIEIPNTYRLPIYNFLIKYM--GINKEEIKYPIESYKSIGDFFSRYIREETRPIGDV-SDYSIVSPCDS 139 (353)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH--CCCHHHhhCChhcCCCHHHceeecccCCCCCCCCC-CCCeEEeCCCc
Confidence 459999999999988765 789999998 89999999889999999999999999999999764 46789999999
Q ss_pred eeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCC----eEEEEEeCCCCceeeecccCeEEeEEEEecCceeccC
Q 007303 484 RLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG----TMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVN 559 (608)
Q Consensus 484 ~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G----~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~ 559 (608)
+|.+++.|+++..+||||++|||.+|||++ .+++|.+| +++++||||.||||||+|++|+|.+.++|||++||||
T Consensus 140 ~v~~~g~I~~~~~~qvKG~~Ysl~~LLg~~-~a~~~~~g~~~~~~~v~yLsP~DYHR~HsP~~g~v~~~~~IpG~L~pVn 218 (353)
T PTZ00403 140 ELTDYGELSSEYLENVKGVKFNVNTFLGSD-MQKKYNDGSTKFFYAIFYLSPKKYHHFHAPFNFKYKIRRHISGELFPVF 218 (353)
T ss_pred eeEeeeEecCCCEEEeCCCcccHHHHhCch-hHHhhcCCCCcEEEEEEEECcceeeEEeccCceEEEEEEEeCCeEeeeC
Confidence 999999999999999999999999999964 78899988 6999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 560 PIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 560 p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
|.+++. ++++|++|||+|+.++++ +|.|++|+|||++||+|.
T Consensus 219 p~~l~~-~~~lf~~NERvv~~~~~~-~G~~~~v~VGA~~VGsI~ 260 (353)
T PTZ00403 219 QGMFKI-INNLFNINERVILSGEWK-GGNVYYAAISAYNVGNIK 260 (353)
T ss_pred HHHHhc-CcccccceEEEEEEeecC-CceEEEEEEeeEEEEEEE
Confidence 999975 489999999999988874 999999999999999995
No 5
>PLN02938 phosphatidylserine decarboxylase
Probab=100.00 E-value=1.2e-51 Score=436.36 Aligned_cols=210 Identities=26% Similarity=0.373 Sum_probs=189.3
Q ss_pred hhhhhhcccccccccchhHHHHHHHHHHHHHHhhCCc---cccccH-HHHHHHhccCCCccccCCCCCCcCCHHHHhccc
Q 007303 385 SMRAIYQSKIGLGLMDIGTKELLKSISEKQGRKMNSV---ESSKEI-PKFVNFFKDQINLADVKYPLEHFKTFNEFFIRE 460 (608)
Q Consensus 385 ~~~~~y~~~~g~~~l~~~~~~~l~~~s~~~g~~~~s~---~S~~~I-~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~ 460 (608)
+++++|+++++..++.... ++.+|++||++.+++ +++..| +.|++.| +|||+|+++|+++|+||||||+|+
T Consensus 77 g~~~~~~~~~~~~ll~lLP---~r~iSrl~G~~a~~~~P~~lr~~i~~~fa~~f--~inl~E~~~p~~~Y~SfndFFtRk 151 (428)
T PLN02938 77 GIEPEFSPDTKASFLRLLP---LRSISRLWGSLTSVELPVWMRPYVYKAWARAF--HSNLEEAALPLEEYASLREFFVRS 151 (428)
T ss_pred CcccccCCHHHHHHHHHcc---HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--CcCHHHhhcchhhCCCHHHhheec
Confidence 3578999999888877765 456999999999998 566666 8999998 899999999999999999999999
Q ss_pred cCCCCccCCCCCCCceeeecCCceeeeeeeccC--CceEEEcCcccchhcccCCCcc-----------------------
Q 007303 461 LKPGARPIDCMEREEVAVCAADSRLMAFKSVED--SLRFWIKGQKFSIQGLLGNDIC----------------------- 515 (608)
Q Consensus 461 lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~--~~~~~iKg~~ysl~~lL~~~~~----------------------- 515 (608)
|||++|||+. ++.++||||||+|++++.|++ +..+||||++|||++|||++..
T Consensus 152 LKpgaRPid~--d~~~iVSPaDG~v~~~g~I~~~~~~~~qVKG~~YSL~~LLG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (428)
T PLN02938 152 LKEGARPIDP--DPNCLVSPVDGIVLRFGELKGPGTMIEQVKGFSYSVSALLGANSLLPMTAEGKEEKEEETLKDKSSKS 229 (428)
T ss_pred cCCCCCcCCC--CCCeEEeccCCceEEeeeecCCCceEEEecCCcccHHHHcCCCcccccccccccchhhccccccccch
Confidence 9999999985 678999999999999999975 4689999999999999996543
Q ss_pred ----------------ccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEE
Q 007303 516 ----------------SNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVS 579 (608)
Q Consensus 516 ----------------a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~ 579 (608)
|+.+.||+++++||||.||||||+|++|+|.+.+||||+||||||.+++. ++++|++|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~a~~~~g~~~~ViYLsP~DYHR~HsP~dg~v~~~rhipG~L~sVnp~~~~~-i~~LF~~NERvVl 308 (428)
T PLN02938 230 WLRVSLASPKLRDPVSASPMKGLFYCVIYLGPGDYHRIHSPSDWNIEVRRHFSGRLFPVNERATRT-IRNLYVENERVVL 308 (428)
T ss_pred hhhhhhccccccccccccccCCcEEEEEEeCccccceEeecCCcEEEEEEEcCCcccccCHHHHhh-CCCccccceEEEE
Confidence 35688999999999999999999999999999999999999999999874 4899999999998
Q ss_pred EEeecCeeeEEEEecccccccccc
Q 007303 580 IISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 580 ~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
..++ ++|.|++|+|||++||+|.
T Consensus 309 ~g~w-~~G~~a~v~VGAtnVGsI~ 331 (428)
T PLN02938 309 EGEW-QEGFMAMAAVGATNIGSIE 331 (428)
T ss_pred Eeec-CCceEEEEEEeeeEEEEEE
Confidence 8886 5999999999999999986
No 6
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=2.9e-51 Score=415.28 Aligned_cols=189 Identities=27% Similarity=0.422 Sum_probs=179.7
Q ss_pred HHHHHHHHhhCCccccccHHHHHHHhccCCCccccCCCCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCceeeee
Q 007303 409 SISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAF 488 (608)
Q Consensus 409 ~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~ 488 (608)
.+|+++|+++++|.|+..|++|++.| +|||+|++.|+++|+||||||+|+|||++|||+. +++++||||||++.++
T Consensus 17 ~~s~~~g~~~~~~~s~~~i~~f~~~~--~i~~~e~~~~~~~y~sfn~FF~R~lk~~~Rpi~~--~~~~vvSPaDg~v~~~ 92 (259)
T PRK03140 17 FTSYLLRKFAQSRLSSILIPSYAKVY--QINQDEMEKGLKEYRTLHELFTRKLKEGKRPIDT--DASSIVSPVDGVFADV 92 (259)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHHh--CCChHHhccChhcCCCHHHhceecCCCCCCCCCC--CCCEEEeCCCcEEEEE
Confidence 48999999999999999999999998 8999999999999999999999999999999975 5788999999999999
Q ss_pred eeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhhhcccCC
Q 007303 489 KSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYC 568 (608)
Q Consensus 489 ~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~ 568 (608)
++|+++..+||||++|||.+||+++.++++|.||+++++||||.||||||+|++|+|.+.++++|.||||||.++... +
T Consensus 93 ~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~i~Lsp~DYHr~h~Pv~G~v~~~~~i~G~l~~V~~~~~~~~-~ 171 (259)
T PRK03140 93 GPIEDDKTFDVKGKRYSIAEMLGNEERAQRYAGGTYMVLYLSPSHYHRIHSPISGTVTEQFVLGRKSYPVNALGLEYG-K 171 (259)
T ss_pred eecCCCCEEEECCceeeHHHhcCChhHHhhhcCCeEEEEEECccceEEEeccCCcEEEEEEECCCceeccCHHHhhcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987643 6
Q ss_pred CCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 569 NVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 569 ~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
++|++|||.++.+++ ++|.|++|+|||++||+|.
T Consensus 172 ~~~~~NeR~v~~i~~-~~G~v~~v~Vga~~Vg~I~ 205 (259)
T PRK03140 172 RPLSKNYRSVTEVNS-DGEHMALVKVGAMFVNSIE 205 (259)
T ss_pred ccccccceEEEEEEe-CCceEEEEEEeeEEeeEEE
Confidence 899999999999965 5899999999999999985
No 7
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=100.00 E-value=7.7e-51 Score=418.54 Aligned_cols=190 Identities=32% Similarity=0.595 Sum_probs=179.3
Q ss_pred HHHHHHHHHhhCCc---cccccHHHHHHHhccCCCccccCCC-CCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCc
Q 007303 408 KSISEKQGRKMNSV---ESSKEIPKFVNFFKDQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 483 (608)
Q Consensus 408 ~~~s~~~g~~~~s~---~S~~~I~~fi~~~~~~i~~~e~~~p-~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg 483 (608)
+.+|+++|++++++ .|+..|++|++.| +|||+|+++| +++|+||||||+|+|||++|||+. +++++||||||
T Consensus 16 ~~~Sr~~g~~~~~~~~~~~~~~i~~f~~~~--~i~~~E~~~~~~~~y~s~~~FF~R~lk~~~Rpi~~--~~~~ivSPaDG 91 (288)
T PRK00044 16 HLLTRLAGWLASSRAGWLTTAVIRLFIKKY--KVDMSEAQKPDPAAYKTFNDFFTRALKDGARPIDE--DPNALVSPADG 91 (288)
T ss_pred HHHHHHHHHHHcCCCccchHHHHHHHHHHh--CCCHHHHccCChhhCCCHHHhceecccCCCCCCCC--CCCEEEeCCCc
Confidence 45899999999999 8999999999998 8999998865 899999999999999999999985 57889999999
Q ss_pred eeeeeeeccCCceEEEcCcccchhcccC-CCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhh
Q 007303 484 RLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 562 (608)
Q Consensus 484 ~~~~~~~i~~~~~~~iKg~~ysl~~lL~-~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~ 562 (608)
+|.++++|+++..+||||++|||++||| ++.++++|.||+++++||||.||||||+|++|+|.+.+||||.+|||||.+
T Consensus 92 ~v~~~~~i~~~~~~~vKG~~Ysl~~lL~~~~~~~~~~~~G~~i~iyLsp~DYHr~HsPv~G~v~~~~~i~G~~~~v~~~~ 171 (288)
T PRK00044 92 AISQLGPIEDGQIFQAKGHSYSLEALLGGDAALADPFRNGSFATIYLSPRDYHRVHMPCDGTLREMIYVPGDLFSVNPLT 171 (288)
T ss_pred eEEeEEeecCCCEEEECCceeeHHHHcCCChHHHHhcCCCEEEEEEECcceeeEEeccCCcEEEEEEEeCCcccccCHHH
Confidence 9999999999999999999999999998 677899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 563 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 563 ~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
++. ++++|++|||+++.++|+ +|.|++|+|||++||+|.
T Consensus 172 ~~~-~~~lf~~NeR~v~~i~t~-~G~v~~v~VGA~~VGsI~ 210 (288)
T PRK00044 172 ARN-VPNLFARNERVVCLFDTE-FGPMAQVLVGATIVGSIE 210 (288)
T ss_pred hcc-CCCccceeeEEEEEEECC-CCcEEEEEEeeEeecceE
Confidence 864 589999999999999986 999999999999999874
No 8
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=2.9e-49 Score=401.92 Aligned_cols=189 Identities=28% Similarity=0.384 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhhCCccccc----cHHHHHHHhccCCCccccCCCCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCC
Q 007303 407 LKSISEKQGRKMNSVESSK----EIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAAD 482 (608)
Q Consensus 407 l~~~s~~~g~~~~s~~S~~----~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaD 482 (608)
++.+|+++|++++++.|+. .|++|++.| +|||+|++ ++++|+||||||+|+|||+ |||+. +++++|||||
T Consensus 4 ~~~~S~~~g~~~~~~~~~~~~~~~i~~f~~~~--~i~~~e~~-~~~~y~sfn~FF~R~lk~~-Rpi~~--~~~~ivSPaD 77 (265)
T PRK03934 4 SNALSRIFGKFAGYKFPKFIQKFINASYVKIF--KIDMSEFK-PPENYKSLNALFTRSLKKP-REFDE--DPNIFISPCD 77 (265)
T ss_pred hHHHHHHHHHHhcCCCCccchHHHHHHHHHHH--CCCHHHhc-CcccCCCHHHhccccCCCC-CCCCC--CCCEEEECCC
Confidence 4569999999999997654 679999998 89999997 6899999999999999985 99964 6788999999
Q ss_pred ceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhh
Q 007303 483 SRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 562 (608)
Q Consensus 483 g~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~ 562 (608)
|+|.+++.|+++..+||||++|+|++|||++ .+++|.+|+++++||||.||||||+|++|+|.+.+||||+||||||.+
T Consensus 78 G~v~~~~~i~~~~~~~vKg~~y~l~~lL~~~-~~~~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~~~~ipG~~~~vn~~~ 156 (265)
T PRK03934 78 SLITECGSLEEDKALQIKGMEYSIEELLGES-NSELVNGFDYINFYLSPKDYHRYHAPCDLEILEARYIPGKLYPVNLPS 156 (265)
T ss_pred cEEEEEEEECCCCEEEECCccccHHHHcCCc-chhhcCCcEEEEEEECcceEEEEeccCCcEEEEEEEcCCeeeccCHHH
Confidence 9999999999999999999999999999987 458999999999999999999999999999999999999999999998
Q ss_pred hcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 563 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 563 ~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
+... +++|++|||+++.++|+..|.|++++|||++||+|.
T Consensus 157 ~~~~-~~lf~~NeR~v~~~et~~g~~v~~v~VgA~~Vg~I~ 196 (265)
T PRK03934 157 LEKN-KNLFVKNERVVLKCKDKKGKRLYFVFVGALNVGKMR 196 (265)
T ss_pred Hhhc-CccccceeEEEEEEEcCCCCEEEEEEEeeEEeeEEE
Confidence 8643 789999999999999975558999999999999986
No 9
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=4.9e-47 Score=425.88 Aligned_cols=190 Identities=27% Similarity=0.468 Sum_probs=177.5
Q ss_pred HHHHHHHHHhhCCcc---ccccHHHHHHHhccCCCccccC-CCCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCc
Q 007303 408 KSISEKQGRKMNSVE---SSKEIPKFVNFFKDQINLADVK-YPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADS 483 (608)
Q Consensus 408 ~~~s~~~g~~~~s~~---S~~~I~~fi~~~~~~i~~~e~~-~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg 483 (608)
+.+|+++|++.+++. ++..|++|++.| +|||+|++ +|+++|+||||||+|+|||++|||+. +++++||||||
T Consensus 339 ~~~S~~~g~~a~~~~~~~~~~~i~~fi~~y--~i~l~E~~~~~~~~y~sfn~FF~R~lk~~~Rpi~~--~~~~ivSPaDg 414 (610)
T PRK09629 339 HLLSRLAGCVAECRVRWFKNAFTAWFARRY--QVDMSQALVEDLTSYEHFNAFFTRALKADARPLDT--TPGAILSPADG 414 (610)
T ss_pred HHHHHHHHHHHhCccHhhHHHHHHHHHHHh--CCCHHHhhccCcccCCCHHHhcccccCCCCCCCCC--CCCeEEecCcc
Confidence 458999999988874 777799999998 89999987 56899999999999999999999975 57899999999
Q ss_pred eeeeeeeccCCceEEEcCcccchhcccC-CCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhh
Q 007303 484 RLMAFKSVEDSLRFWIKGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIA 562 (608)
Q Consensus 484 ~~~~~~~i~~~~~~~iKg~~ysl~~lL~-~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~ 562 (608)
+|++++.|+++..+||||++|||.+||| ++.++++|.||+++++||||.||||||+|++|+|.+.+||||+||+|||.+
T Consensus 415 ~v~~~g~i~~~~~~~vKG~~Ysl~eLL~~~~~~~~~~~~G~~~~iyLsP~DYHR~H~Pv~G~v~~~~~ipG~l~sV~~~~ 494 (610)
T PRK09629 415 AISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMVYVPGRIFSVNQTT 494 (610)
T ss_pred ceeeeccccCCcEEEECCCcccHHHHhCCCHHHHhhcCCCeEEEEEECCCeeEEEeecCCcEEEEEEEECCeEEeccHHH
Confidence 9999999999999999999999999998 678899999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 563 VNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 563 ~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
++. ++++|++|||++++++|+ +|.|++|+|||++||+|.
T Consensus 495 ~~~-~~~lf~~NeR~v~~i~t~-~G~~~~v~VGA~~VgsI~ 533 (610)
T PRK09629 495 AEN-VPELFARNERVVCLFDTE-RGPMAVVLVGAMIVASVE 533 (610)
T ss_pred hhc-cCccchhceeEEEEEEeC-CCeEEEEEeceEeeeeEE
Confidence 864 489999999999999995 899999999999999984
No 10
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=100.00 E-value=3.5e-45 Score=366.99 Aligned_cols=159 Identities=32% Similarity=0.565 Sum_probs=149.2
Q ss_pred ccccCC-CCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCC-cccc
Q 007303 440 LADVKY-PLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND-ICSN 517 (608)
Q Consensus 440 ~~e~~~-p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~-~~a~ 517 (608)
|+|+++ ++++|+||||||+|+|||++|||+. ++.++||||||+|..++.|++...+||||++|||.+||+++ .+++
T Consensus 1 ~~e~~~~~~~~y~s~n~FF~R~lk~~~Rpi~~--~~~~ivSPaDG~v~~~~~i~~~~~~~vKG~~ysl~~lL~~~~~~~~ 78 (238)
T TIGR00163 1 LDEAEKPDLADYRSLNEFFIRPLKLERRPVDK--EPNALVSPADGVISEVGIINPNQILQVKGMDYSLEELLGEKNPLSP 78 (238)
T ss_pred CchhccCCcccCCCHHHheeecCCCCCCCCCC--CCCEEEECCCceeEEEEEecCCcEEEEcCCcccHHHHcCCChhHHH
Confidence 578875 4899999999999999999999975 67889999999999999999999999999999999999866 7899
Q ss_pred CcCCCe-EEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeecCeeeEEEEeccc
Q 007303 518 SFLNGT-MVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSH 596 (608)
Q Consensus 518 ~f~~G~-~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa 596 (608)
+|.||. ++++||||.||||||+|++|+|.+.+||||++|||||.++.. .+++|++|||+++.++++ +|.|++|+|||
T Consensus 79 ~f~~G~~~i~iyLsp~DYHr~hsPv~G~v~~~~~ipG~~~~v~~~~~~~-~~~lf~~NeR~v~~i~~~-~G~v~~v~VGA 156 (238)
T TIGR00163 79 YFRNGGFFVVTYLSPRDYHRFHSPCDCRLRKMRYFPGDLFSVNPLGLQN-VPNLFVRNERVILVFDTE-FGNMLMIPVGA 156 (238)
T ss_pred hccCCeEEEEEEECccceeEEeccCCcEEEEEEEcCccEeccCHHHHhc-CCCcceeeeEEEEEEEeC-CceEEEEEEee
Confidence 999998 889999999999999999999999999999999999999864 488999999999999985 99999999999
Q ss_pred cccccc
Q 007303 597 SHSHSR 602 (608)
Q Consensus 597 ~~vg~~ 602 (608)
++||+|
T Consensus 157 ~~Vg~I 162 (238)
T TIGR00163 157 TNVGSI 162 (238)
T ss_pred eEeeEE
Confidence 999998
No 11
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=100.00 E-value=6.4e-40 Score=322.34 Aligned_cols=147 Identities=39% Similarity=0.611 Sum_probs=139.5
Q ss_pred HHHHhccccCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCcccchhcccCC-CccccCcCCCeEEEEEeCC
Q 007303 453 FNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAP 531 (608)
Q Consensus 453 fn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~-~~~a~~f~~G~~~~~~Lsp 531 (608)
||+||+|+|||++|||+.+ +++++|||||++.++++|+++..+||||++|++++||++ .++++.|.+|+++++||||
T Consensus 1 f~~FF~r~~r~~~R~i~~~--~~~ivSPaDG~v~~~~~i~~~~~~~iKg~~y~l~~ll~~~~~~~~~~~~g~~i~i~Lsp 78 (202)
T PF02666_consen 1 FNDFFTRFFRDPARPIPDD--PDAIVSPADGKVLVIGEIEEDSLFQIKGQPYSLRELLGDPSPLAEPFQGGTFIVIYLSP 78 (202)
T ss_pred ChhHeehhcCCCCCCCCCC--CCEEEeCcCcEEEeeEEECCCceEEEecCcCCHHHHhCccccceeccCCceEEEEEcCC
Confidence 7999999999999999874 569999999999999999999999999999999999998 7889999999999999999
Q ss_pred CCceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 532 QDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 532 ~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
.||||||+|++|+|.+.++|||.+|+|+|.++... +++|++|||+++.+++ ++|+|++++|||++||+|.
T Consensus 79 ~DyHr~haPv~G~v~~~~~i~G~~~~v~~~~~~~~-~~~~~~NeR~~~~i~~-~~G~v~~v~Vga~~v~~I~ 148 (202)
T PF02666_consen 79 FDYHRNHAPVDGRVEEVRYIPGKLLPVNPPALSHI-PGLFAENERVVLVIET-KFGKVAVVQVGALLVGSIV 148 (202)
T ss_pred CcceEEEecCCEEEEEEEEECccccccChHHhhcc-CCeeEEeeEEEEEEEE-CCCEEEEEEeccceeceeE
Confidence 99999999999999999999999999999998754 8999999999999996 5999999999999999984
No 12
>KOG2420 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=2e-38 Score=317.04 Aligned_cols=187 Identities=32% Similarity=0.471 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhhCCccccccHHHHHHHh-----c--cCCCccccCCC-CCCcCCHHHHhccccCCCCccCCCCCCCceee
Q 007303 407 LKSISEKQGRKMNSVESSKEIPKFVNFF-----K--DQINLADVKYP-LEHFKTFNEFFIRELKPGARPIDCMEREEVAV 478 (608)
Q Consensus 407 l~~~s~~~g~~~~s~~S~~~I~~fi~~~-----~--~~i~~~e~~~p-~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~v 478 (608)
|+.+|+.||.+..- .||.|++-| . +++||+|+.+| +.+|+||.|||+|+|||++|||+. ...+|
T Consensus 87 lrtlSR~WG~~n~~-----elP~wlR~~~y~lys~~Fg~NL~Ea~~pDl~hY~nlaeFF~RkLKpg~RpIdp---~~piV 158 (382)
T KOG2420|consen 87 LRTLSRVWGQLNSL-----ELPVWLRPPGYGLYARTFGCNLDEAADPDLTHYRNLAEFFTRKLKPGTRPIDP---ASPLV 158 (382)
T ss_pred hHHHHHHHHhhhhe-----eccchhcchhhhhhhHhhccCchhccCchhhhhhhHHHHHhhccCCCCcccCC---CCcee
Confidence 67899999987654 345444421 1 48999999988 899999999999999999999986 46789
Q ss_pred ecCCceeeeeeeccCCceEEEcCcccchhcccCCC--------cccc--Cc------------CCC---eEEEEEeCCCC
Q 007303 479 CAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGND--------ICSN--SF------------LNG---TMVIFRLAPQD 533 (608)
Q Consensus 479 sPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~--------~~a~--~f------------~~G---~~~~~~Lsp~d 533 (608)
|||||+|+.||.|+++.+.||||.+|||++|||.. ++++ +. ..+ +..++||+|.|
T Consensus 159 SPaDGkIL~fG~v~~~~IEqVKG~tYSleafLG~~~~P~~~~~d~~~f~~~~as~~~lk~~~s~~~~~Ly~~VIYLaPGD 238 (382)
T KOG2420|consen 159 SPADGKILHFGVVEDNEIEQVKGHTYSLEAFLGTHSHPSCASVDLPQFARVSASCDELKPSVSRPGTELYQCVIYLAPGD 238 (382)
T ss_pred cCCCCcEEEEEEecCceeeEecCeeeeHHHHcCCCCCCccccccccccccccCchhhhhhcCCCcccceeEEEEEccCCc
Confidence 99999999999999999999999999999999921 1111 01 111 57788999999
Q ss_pred ceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 534 YHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 534 YHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
|||||+|++++++..+|++|.+++|+|...+ ..+++|+.|||+++..+. .+|.+.+++|||+|||+|-
T Consensus 239 YH~fHSP~dWv~t~rRHf~G~l~svsp~~~~-~l~~lf~LnerV~l~G~w-khGFfs~taVGATNvGsI~ 306 (382)
T KOG2420|consen 239 YHRFHSPADWVATVRRHFPGLLLSVSPTLAR-WLPNLFCLNERVVLLGSW-KHGFFSMTAVGATNVGSIV 306 (382)
T ss_pred ccccCChHHhhhhhhhcccCcccccChhhhc-cCCceEEEEEEeeeccee-eeceeeeeeeccCccceEE
Confidence 9999999999999999999999999998765 569999999999987655 6999999999999999983
No 13
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=100.00 E-value=2e-37 Score=308.14 Aligned_cols=172 Identities=34% Similarity=0.468 Sum_probs=160.0
Q ss_pred HHHHHHHHHhhCCccccccHHHHHHHhccCCCccccCCCCCCcCCHHHHhccccCCCCccCCCCCCCceeeecCCceeee
Q 007303 408 KSISEKQGRKMNSVESSKEIPKFVNFFKDQINLADVKYPLEHFKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMA 487 (608)
Q Consensus 408 ~~~s~~~g~~~~s~~S~~~I~~fi~~~~~~i~~~e~~~p~~~y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~ 487 (608)
+.++...+.++.++.+++.|.+|++.| .+||+|+..|...|.|||+||+|.++++.||++. + .++|+||++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~fi~~~--~v~~~e~~~~~~~~~~~~~~f~r~l~~~~Rp~dp----~-~v~P~D~~i~~ 85 (239)
T COG0688 13 RLFGLLAGVRSPSPIIKREIYPFIAAF--LVDMSEAEKPLEPYASLNEFFTRFLKYFFRPIDP----E-RVSPADGRIVV 85 (239)
T ss_pred hhHHHHhhhcCCCceeehhhhhHHHHH--HhhHHHhhhhhhHHHHHHHHHHHHHhcccccCCC----C-ccCCCCCcEEE
Confidence 347777888889999999999999998 7999999988899999999999999999999975 2 79999999999
Q ss_pred eeeccCCceEEEcCcccchhcccCC-CccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEecCceeccChhhhccc
Q 007303 488 FKSVEDSLRFWIKGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSK 566 (608)
Q Consensus 488 ~~~i~~~~~~~iKg~~ysl~~lL~~-~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~ 566 (608)
++ +||+.|++++||++ .+++..|.+|+++++||||.||||+|+||+|+|.+++|+||.+++|||.+
T Consensus 86 ~p---------akG~~~sv~~ll~~~~el~~~~~~g~~v~i~Lsp~DyHr~haP~~G~i~~~~~~~G~~~~v~~~~---- 152 (239)
T COG0688 86 SP---------ADGRVYSVEELLGPDDELAYGDRDGTRVSIFLSPFDYHRNHAPVDGTIIEVRYVPGKFFSANLDK---- 152 (239)
T ss_pred ec---------CCCeEEEHHHhcCChhhhccccCCceEEEEEeCcceeeeEeCCCCCEEEEEEEECCceeccChhh----
Confidence 88 99999999999984 58889999999999999999999999999999999999999999999966
Q ss_pred CCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 567 YCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 567 ~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
+|++|||++++++|+ +|+|++|+|||++|++|.
T Consensus 153 ---~~~~NER~~~~i~t~-~g~v~~v~Vga~~v~~Iv 185 (239)
T COG0688 153 ---AFTENERNSVLIETE-QGKVVVVQVAGLVARRIV 185 (239)
T ss_pred ---hhcccceEEEEEEcC-CCcEEEEEEhhheeeEEE
Confidence 678999999999997 679999999999999974
No 14
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=99.89 E-value=6.6e-23 Score=199.09 Aligned_cols=116 Identities=24% Similarity=0.293 Sum_probs=97.8
Q ss_pred cCCHHHHhccccCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCC--eEEEE
Q 007303 450 FKTFNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNG--TMVIF 527 (608)
Q Consensus 450 y~sfn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G--~~~~~ 527 (608)
+..|+.||.|. +.||++. ++++++|||||+|..++++ ++.|.+| .++++
T Consensus 15 ~~~~~~~ffR~---p~R~~~~--~~~~ivSPaDG~v~~i~~~------------------------~~~~~~g~~~~i~I 65 (189)
T TIGR00164 15 FTLFTLQFFRD---PDREIPQ--GPEAVLSPADGRIDVVERA------------------------RRPFPDGDGLKISI 65 (189)
T ss_pred HHHHHHHhcCC---CCCCCCC--CCCEEEeCCCcEEEEEEee------------------------ccccCCCcEEEEEE
Confidence 44588888887 8899964 6788999999999987653 2345555 67888
Q ss_pred EeCCCCceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeecCeeeEEEEeccccccccc
Q 007303 528 RLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSR 602 (608)
Q Consensus 528 ~Lsp~dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~ 602 (608)
||||.||||+|+|++|+|.+.+++||++++++- ..++.+|||+++.++|+ .|.|++++||++.++++
T Consensus 66 ~Lsp~DyHr~haP~~G~v~~~~~~~G~~~~~~~-------~~~~~~NeR~~~~~~t~-~G~v~~v~v~~~~~~~i 132 (189)
T TIGR00164 66 FMSPFDVHVNRAPAGGKVTYVKHIDGSFVPAFL-------RKASTENERNAVLIKTA-SGEVGVVQIAGFVARRI 132 (189)
T ss_pred EcCCcccceEEcccccEEEEEEEECCeEeeccc-------CcccccceeEEEEEEcC-CCCEEEEEECeEEccEE
Confidence 999999999999999999999999999998641 35788999999999986 89999999999887765
No 15
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=99.86 E-value=1.9e-21 Score=191.35 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=99.4
Q ss_pred HHHHhccccCCCCccCCCCCCCceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCC
Q 007303 453 FNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQ 532 (608)
Q Consensus 453 fn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~ 532 (608)
|..||.|. +.||++. ++++++|||||++..++++++. ++++ +...+.+||+|.
T Consensus 37 ~~~~ffRd---p~R~~~~--~~~~i~SPaDG~v~~i~~v~d~--------------~~~~--------~~~~i~i~lsp~ 89 (206)
T PRK05305 37 FCLYFFRD---PERVIPT--DDGLVVSPADGKVVVIEEVVPP--------------YGDE--------PRLRISIFMSVF 89 (206)
T ss_pred HHHheecC---CCCCCCC--CCCEEEeCCCcEEEEEEEECCC--------------ccCC--------ceEEEEEEECcc
Confidence 67888887 7899874 6788999999999999988761 2222 235789999999
Q ss_pred CceeeecccCeEEeEEEEecCceeccChhhhcccCCCCccceeEEEEEEeecCeeeEEEEecccccccccc
Q 007303 533 DYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVCHYSRSHSHSHSRF 603 (608)
Q Consensus 533 dYHR~h~P~~g~v~~~~~i~G~~~~v~p~~~~~~~~~~f~~N~R~~~~~~t~~~G~v~~v~VGa~~vg~~~ 603 (608)
||||+|+|++|+|.+.+|+||.+++++. +..+++|||+++.++|++.|++++++|||++++++.
T Consensus 90 d~H~~~aP~~G~V~~~~~~~G~~~~~~~-------~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~ 153 (206)
T PRK05305 90 NVHVNRAPVSGTVTKVEYRPGKFLNAFL-------DKASEENERNAVVIETADGGEIGVVQIAGLIARRIV 153 (206)
T ss_pred cCCEEEeCccCEEEEEEEECCeEEecCC-------CcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE
Confidence 9999999999999999999999999963 345789999999999987889999999999887663
No 16
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.48 E-value=6.4e-14 Score=130.10 Aligned_cols=89 Identities=18% Similarity=0.363 Sum_probs=79.7
Q ss_pred cceeeEEEEEEeeee------e-ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 50 EDFAGIALLTLISAE------M-KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 50 ~~~~~~~~~~~~~a~------~-~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
+++.|++.++|+.|. + +.||||+++ .+|.+.++|++++
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl-~lg~q~lkT~~v~---------------------------------- 46 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVL-ELGNQKLKTRVVY---------------------------------- 46 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEE-EECCeeeeeeeec----------------------------------
Confidence 568899999999988 5 899999665 8999999999999
Q ss_pred hcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccccc
Q 007303 123 FFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ 178 (608)
+++||+|||.++|.+.+. ...++++|||+|.++.+|+||+++|+++.++..
T Consensus 47 ----~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~ 97 (168)
T KOG1030|consen 47 ----KNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEA 97 (168)
T ss_pred ----CCCCCcccceEEEEecCC-CceEEEEEEeCCCCCcccccceeeeccHHHHHH
Confidence 999999999888888554 478999999999999999999999999998643
No 17
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.41 E-value=9.4e-13 Score=123.72 Aligned_cols=118 Identities=31% Similarity=0.529 Sum_probs=103.5
Q ss_pred hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcc-----cHHH
Q 007303 184 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQV-----AANK 254 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~-----~~ee 254 (608)
.++|..+|.+++|+| ++.+++.++. .|+..+ ++.+++.+|.|++|.|+++||..++....... ..++
T Consensus 11 ~~~F~~fD~d~~G~i~~~el~~~lr~lg~-~~t~~e---l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 11 KEAFQLFDKDGDGKISVEELGAVLRSLGQ-NPTEEE---LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHCCCCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 789999999999999 7888888865 677777 89999999999999999999999998754332 3459
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCccc
Q 007303 255 KEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI 309 (608)
Q Consensus 255 l~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di~ 309 (608)
++++|+.+|+|++|+||.+||+.+|..++++... ..|.++++..|.++|..
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~----~e~~~mi~~~d~d~dg~ 137 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD----EECKEMIREVDVDGDGK 137 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH----HHHHHHHHhcCCCCCCe
Confidence 9999999999999999999999999999988774 67999999999877765
No 18
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.39 E-value=1.7e-12 Score=121.31 Aligned_cols=125 Identities=27% Similarity=0.352 Sum_probs=108.2
Q ss_pred cccCcchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH-hcCc
Q 007303 176 LTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQ 249 (608)
Q Consensus 176 Ls~ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~-lg~~ 249 (608)
++.+++++ ++.|.++|++++|.| +..+++.+++ .++..+ +.++|..+|. +.|.|++.+|..+|.. ....
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~e---i~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~ 88 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAE---INKLFEEIDA-GNETVDFPEFLTVMSVKLKRG 88 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHH---HHHHHHhccC-CCCccCHHHHHHHHHHHhccC
Confidence 55666666 889999999999999 7888887765 666666 8999999999 9999999999999988 4456
Q ss_pred ccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCccc
Q 007303 250 VAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI 309 (608)
Q Consensus 250 ~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di~ 309 (608)
.+.++++++|+.||+|+||+|+..|++.+++.+++..+. ..+.+++...|.+++..
T Consensus 89 ~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~d----eev~~ll~~~d~d~dG~ 144 (160)
T COG5126 89 DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSD----EEVEKLLKEYDEDGDGE 144 (160)
T ss_pred CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCH----HHHHHHHHhcCCCCCce
Confidence 678999999999999999999999999999999998877 67889999888766654
No 19
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.25 E-value=1.5e-11 Score=109.99 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=73.9
Q ss_pred eeeEEEEEEeeee----eccCCCceEEEecCc---ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhc
Q 007303 52 FAGIALLTLISAE----MKFKDKWLACVSLGE---QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFF 124 (608)
Q Consensus 52 ~~~~~~~~~~~a~----~~~~d~~~~~~~~~~---~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 124 (608)
-+|-+.|+++.|+ .+.+|||+.++.+++ ...+|+|.+
T Consensus 12 ~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~r------------------------------------ 55 (118)
T cd08677 12 QKAELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKK------------------------------------ 55 (118)
T ss_pred cCCEEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceec------------------------------------
Confidence 3588999999998 478999999976542 567999999
Q ss_pred ccCCCCCccccccceeecc--CCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 125 WCSTDKPIWNSEKKLLLET--NGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 125 ~~~tlnP~wne~~~~~ve~--~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+|+||+|||.|.|.+.. -...++.++|||+|++++||.||++.+++.++
T Consensus 56 --ktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~ 106 (118)
T cd08677 56 --LALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADV 106 (118)
T ss_pred --CCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccc
Confidence 99999999988887733 26678999999999999999999999999875
No 20
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.25 E-value=2.1e-11 Score=110.10 Aligned_cols=82 Identities=16% Similarity=0.308 Sum_probs=71.5
Q ss_pred eeEEEEEEeeee------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 53 AGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 53 ~~~~~~~~~~a~------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
.|.+.|++++|+ ++.+|||+.+ .+|.+.+||++++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i-~lg~~~~kT~v~~-------------------------------------- 41 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRI-RVGHAVYETPTAY-------------------------------------- 41 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEE-EECCEEEEeEEcc--------------------------------------
Confidence 388999999999 4889998665 7788889999987
Q ss_pred C-CCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 127 S-TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 127 ~-tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+ +.||+|||+|.+.+..+ ...+.++|||+|.++++|+||.+.+++..
T Consensus 42 ~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~iG~~~i~l~~ 89 (121)
T cd04016 42 NGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDERIAWTHITIPE 89 (121)
T ss_pred CCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCceEEEEEEECch
Confidence 5 79999999999988654 35799999999999999999999999964
No 21
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.24 E-value=2e-11 Score=108.10 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=74.0
Q ss_pred eEEEEEEeeeee-----------ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 54 GIALLTLISAEM-----------KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 54 ~~~~~~~~~a~~-----------~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
|++.|++++|+. +..|||+++ .++.+.+||++++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v-~~~~~~~kT~v~~---------------------------------- 45 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVII-SFGRRVFRTSWRR---------------------------------- 45 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEE-EECCEeEeeeeec----------------------------------
Confidence 899999999991 126999876 4677889999999
Q ss_pred hcccCCCCCccccccceeecc-CCCcceeeEEeeccccccCCcCcceeeecccccccCc
Q 007303 123 FFWCSTDKPIWNSEKKLLLET-NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDS 180 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve~-~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee 180 (608)
+|+||+|||.+.+.+.. .....+.++|||+|.++++|+||.+.+++.+++....
T Consensus 46 ----~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 46 ----HTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred ----CCCCCcccceEEEEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 99999999988887643 3446799999999999999999999999999765443
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.24 E-value=1.3e-11 Score=115.26 Aligned_cols=125 Identities=19% Similarity=0.359 Sum_probs=97.7
Q ss_pred ceeeEEeeccccccCCcCcceeeecccc------cccCcchh--hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHH
Q 007303 148 VARISVFETNRLSKSNLEGYCEVDLLEF------LTKDSDAD--SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSF 218 (608)
Q Consensus 148 ~l~~~v~D~D~~s~~D~iG~~~i~l~el------Ls~ee~~~--~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~ 218 (608)
.-.|..+|.|+ ++.|+..++ +....... .++|+.+|. +.+.| +.+++..+....-....++.
T Consensus 23 keaF~l~D~d~--------~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 23 KEAFQLFDRDS--------DGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred HHHHHHhCcCC--------CCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 34566777766 556777776 23333333 789999998 88888 77776665432211111223
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
++.+|+.||.|++|+|+..|+..++..+|+.+++++++++++.+|.|+||.|+++||.+.+..
T Consensus 94 l~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 94 LREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999998743
No 23
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=5.7e-11 Score=108.80 Aligned_cols=122 Identities=21% Similarity=0.344 Sum_probs=102.3
Q ss_pred Ccchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH-hcCcccH
Q 007303 179 DSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAA 252 (608)
Q Consensus 179 ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~-lg~~~~~ 252 (608)
++... ++.|+.+|++++|+| +...++++++ .+...+ +..+...+|.++.|.|++++|...+.. ++...+.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~e---i~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~ 105 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEE---ILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTK 105 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHH---HHHHHHhhhhccCceechHHHHHHHHHHHhccCcH
Confidence 33334 778999999999999 4444566655 455555 889999999999999999999999776 7888899
Q ss_pred HHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCcc
Q 007303 253 NKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTM 308 (608)
Q Consensus 253 eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di 308 (608)
+++..+|+.+|.|++|+||+.+|+.+..++++.... ..+.+++.++|.++|.
T Consensus 106 eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD----~El~eMIeEAd~d~dg 157 (172)
T KOG0028|consen 106 EEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTD----EELMEMIEEADRDGDG 157 (172)
T ss_pred HHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccH----HHHHHHHHHhcccccc
Confidence 999999999999999999999999999999987766 5788999999887765
No 24
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.18 E-value=8e-11 Score=104.69 Aligned_cols=85 Identities=19% Similarity=0.353 Sum_probs=72.9
Q ss_pred eEEEEEEeeee-------e-ccCCCceEEEec--CcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhh
Q 007303 54 GIALLTLISAE-------M-KFKDKWLACVSL--GEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISF 123 (608)
Q Consensus 54 ~~~~~~~~~a~-------~-~~~d~~~~~~~~--~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 123 (608)
|++.|+|++|+ . +.+|||+.+... +....+|++++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~----------------------------------- 45 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR----------------------------------- 45 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-----------------------------------
Confidence 78999999999 3 789999988643 44678999999
Q ss_pred cccCCCCCccccccceeeccC---CCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 124 FWCSTDKPIWNSEKKLLLETN---GPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 124 ~~~~tlnP~wne~~~~~ve~~---~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+|+||+|||.+.+.+..+ ....+.++|||+|.++++|++|.+.+++.+++
T Consensus 46 ---~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 46 ---KDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred ---CCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHh
Confidence 999999999887766432 34679999999999999999999999999976
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.17 E-value=4.9e-11 Score=112.08 Aligned_cols=125 Identities=16% Similarity=0.342 Sum_probs=96.0
Q ss_pred eeeEEeeccccccCCcCcceeeecccc------cccCcchh--hhhhhccCCCCCchh-hHHHHhhcC---CCCChhh-h
Q 007303 149 ARISVFETNRLSKSNLEGYCEVDLLEF------LTKDSDAD--SEVFDLLDPSSSNKI-VGKISLSCS---VEDPIET-E 215 (608)
Q Consensus 149 l~~~v~D~D~~s~~D~iG~~~i~l~el------Ls~ee~~~--~eiF~~~D~d~dGkI-l~ell~~l~---~~~~~~~-e 215 (608)
..|..+|.|. ++.++..++ +....... ..+++.+|.+++|.| +.+++..+. ....... .
T Consensus 12 ~~F~~fD~d~--------~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 12 EAFQLFDKDG--------DGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHCCCC--------CCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence 3466677766 456777776 33333333 788999999999999 555443332 1111111 1
Q ss_pred HHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 216 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 216 ~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
...++++|+.+|.|++|+|+.+||..+|..+|...+.++++.+++.+|.|+||.|+|+||.+++..
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 223999999999999999999999999999999999999999999999999999999999998853
No 26
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.12 E-value=1.5e-10 Score=104.41 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=70.3
Q ss_pred EEEEEeeee------eccCCCceEEEecC----c--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhh
Q 007303 56 ALLTLISAE------MKFKDKWLACVSLG----E--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISF 123 (608)
Q Consensus 56 ~~~~~~~a~------~~~~d~~~~~~~~~----~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 123 (608)
++|++++|+ .|.+|||+++...| + +.++|++++
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~----------------------------------- 46 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKN----------------------------------- 46 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEec-----------------------------------
Confidence 578888888 27899999987544 3 357999999
Q ss_pred cccCCCCCccccccceeecc---CCCcceeeEEeeccccccCCcCcceeeeccccccc
Q 007303 124 FWCSTDKPIWNSEKKLLLET---NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 124 ~~~~tlnP~wne~~~~~ve~---~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ 178 (608)
+|+||+|||.|.|.+.. .....+.+.|+|+|..+++|+||.+.+++.++...
T Consensus 47 ---~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~ 101 (120)
T cd08395 47 ---NNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQA 101 (120)
T ss_pred ---CCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCC
Confidence 99999999999888742 24466999999999888899999999999996543
No 27
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.10 E-value=1.8e-10 Score=102.24 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=76.8
Q ss_pred EEEEEeeee----e----ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccC
Q 007303 56 ALLTLISAE----M----KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCS 127 (608)
Q Consensus 56 ~~~~~~~a~----~----~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 127 (608)
+.|+|++|+ + +.+|||+.+. ++.+..||++++ +
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~-~~~~~~kT~v~~--------------------------------------~ 41 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVK-FGSTTYKTDVVK--------------------------------------K 41 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEE-ECCeeEecceec--------------------------------------C
Confidence 367888887 2 5689998775 456899999999 9
Q ss_pred CCCCcc-ccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccccccCcchh-hhhhhccC
Q 007303 128 TDKPIW-NSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDLLD 191 (608)
Q Consensus 128 tlnP~w-ne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~-~eiF~~~D 191 (608)
++||.| ||.|.+.+... .+..+.++|||+|.++++|+||.+.+++.+++....... ..+|.++|
T Consensus 42 ~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 42 SLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999 99887777543 346799999999999999999999999999766432222 55677665
No 28
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.08 E-value=2.5e-10 Score=106.46 Aligned_cols=86 Identities=22% Similarity=0.441 Sum_probs=74.8
Q ss_pred eEEEEEEeeee------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccC
Q 007303 54 GIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCS 127 (608)
Q Consensus 54 ~~~~~~~~~a~------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 127 (608)
|.+.|+|++|+ .+.+|||+.+ .++.+..+|++++ +
T Consensus 2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v-~~g~~~~kT~vvk--------------------------------------~ 42 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDFTSSDPYVVL-TLGNQKVKTRVIK--------------------------------------K 42 (145)
T ss_pred eEEEEEEEeeECCCCCCCCCcCcEEEE-EECCEEEEeeeEc--------------------------------------C
Confidence 88999999998 3678998765 5788999999999 9
Q ss_pred CCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccC
Q 007303 128 TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKD 179 (608)
Q Consensus 128 tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~e 179 (608)
|+||+|||++.+.+... ...+.++|||+|.++++|+||.+.+++.+++...
T Consensus 43 t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 43 NLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 99999999888777544 5679999999999999999999999999976543
No 29
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.07 E-value=3.1e-10 Score=104.81 Aligned_cols=86 Identities=21% Similarity=0.398 Sum_probs=75.8
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcc
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFW 125 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 125 (608)
.|.+.|++++|+ .+.+|||+.+. ++.+.+||++++
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~-~~~~~~kT~vi~------------------------------------- 55 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVS-MGSQEHKTKVVS------------------------------------- 55 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEE-ECCEeeeccccC-------------------------------------
Confidence 389999999999 37899997764 678899999999
Q ss_pred cCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 126 CSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 126 ~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+|+||.||+.+.+.+.......+.++|||+|.++++|++|.+.+++.+++.
T Consensus 56 -~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 56 -DTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred -CCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhcc
Confidence 999999999888877655556799999999999999999999999999764
No 30
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.07 E-value=2.5e-10 Score=103.89 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=76.7
Q ss_pred EEEEEEeeee----------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhc
Q 007303 55 IALLTLISAE----------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFF 124 (608)
Q Consensus 55 ~~~~~~~~a~----------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 124 (608)
++.|++++|+ .|.+|||+.+ .+|.+..||++++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i-~~g~~~~rTk~~~------------------------------------ 43 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVA-KYGPKWVRTRTVE------------------------------------ 43 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEE-EECCEEeEcCccc------------------------------------
Confidence 4678888887 3888999776 6899999999999
Q ss_pred ccCCCCCccccccceeeccCCCcceeeEEeeccccc------cCCcCcceeeecccccccCcchhhhhhhccCCC
Q 007303 125 WCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLS------KSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 193 (608)
Q Consensus 125 ~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s------~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d 193 (608)
+++||+|||+|.|.+.... ..+.++|||+|.++ .+|+||.+.+++..+...... ...|.+.+.+
T Consensus 44 --~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~--~~~~~L~~~~ 113 (126)
T cd08379 44 --DSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVY--AHSYPLLSLN 113 (126)
T ss_pred --CCCCCcceeEEEEEecCCC-CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEE--eeEEEeEeCC
Confidence 9999999998888885543 47999999999974 899999999999996543332 2355555443
No 31
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.07 E-value=2.5e-10 Score=103.81 Aligned_cols=82 Identities=20% Similarity=0.371 Sum_probs=70.3
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|+|++|+ .+.+|||+.+ .++...+||++++ +|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v-~l~~~~~kT~v~~--------------------------------------~t 41 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVII-QLGKEKYSTSVKE--------------------------------------KT 41 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEE-EECCeeeeeeeec--------------------------------------CC
Confidence 468888888 3688999776 5677889999999 99
Q ss_pred CCCccccccceeecc-----CCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 129 DKPIWNSEKKLLLET-----NGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 129 lnP~wne~~~~~ve~-----~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+||+|||.|.|.+.. .....+.++|||+|.++++|+||.+.+++.++.
T Consensus 42 ~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 42 TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhh
Confidence 999999988887754 245679999999999999999999999999965
No 32
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.04 E-value=5.9e-10 Score=100.55 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=77.8
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|+|++|+ .+.+|||+.+...+...++|++++ +|
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~--------------------------------------~t 43 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--------------------------------------KN 43 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc--------------------------------------CC
Confidence 568888888 378999988876566789999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCCC
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 194 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~ 194 (608)
+||+|||.|.+.+... ...+.++|||+|..+++|+||.+.+++.++...... ...+.+.+..+
T Consensus 44 ~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~--~~~~~L~~~~~ 106 (121)
T cd04042 44 LNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPT--EVKLKLEDPNS 106 (121)
T ss_pred CCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCe--EEEEECCCCCC
Confidence 9999999888776543 467999999999999999999999999997644333 22455555443
No 33
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.03 E-value=8e-10 Score=100.67 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=75.8
Q ss_pred cccccceeeEEEEEEeeee------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHh
Q 007303 46 VLNEEDFAGIALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLF 119 (608)
Q Consensus 46 ~~~~~~~~~~~~~~~~~a~------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (608)
..++..-.|.+.|+|++|+ ++..|||+++. .+.+.+||++++
T Consensus 20 ~~~~~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~-~~~~~~kT~vi~------------------------------- 67 (127)
T cd04032 20 CCPTRRGLATLTVTVLRATGLWGDYFTSTDGYVKVF-FGGQEKRTEVIW------------------------------- 67 (127)
T ss_pred cCcCcCCcEEEEEEEEECCCCCcCcCCCCCeEEEEE-ECCccccCceec-------------------------------
Confidence 3345556689999999999 47889998885 455699999999
Q ss_pred hhhhcccCCCCCccccccceee-ccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 120 VISFFWCSTDKPIWNSEKKLLL-ETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 120 ~~~~~~~~tlnP~wne~~~~~v-e~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+++||+|||+|.+.. .......+.++|||+|.++++|+||.+.+++....
T Consensus 68 -------~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 68 -------NNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred -------CCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 999999999777753 33345789999999999999999999999998643
No 34
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.01 E-value=8.4e-10 Score=102.85 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=73.8
Q ss_pred eeEEEEEEeeee----e----ccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 53 AGIALLTLISAE----M----KFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 53 ~~~~~~~~~~a~----~----~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
.|.+.|+|+.|+ + +.+|||+.++.+++ ...||++++
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~k-------------------------------- 75 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR-------------------------------- 75 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecC--------------------------------
Confidence 589999999998 1 46899999987665 368999999
Q ss_pred hhhcccCCCCCccccccceeeccCCCcceeeEEe-eccccccCCcCcceeeecccc
Q 007303 121 ISFFWCSTDKPIWNSEKKLLLETNGPHVARISVF-ETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~-D~D~~s~~D~iG~~~i~l~el 175 (608)
+|+||+|||+|.+.+. .....+.++|| |++.++++|+||.+.+++.++
T Consensus 76 ------ktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l 124 (146)
T cd04028 76 ------KTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDL 124 (146)
T ss_pred ------CCCCCccCCeEEEEEc-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccc
Confidence 9999999998888887 55678999999 799999999999999999995
No 35
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.00 E-value=1.1e-09 Score=98.76 Aligned_cols=99 Identities=16% Similarity=0.287 Sum_probs=81.1
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
|++.|++++|+ .+..|||+.+...+....+|++++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~-------------------------------------- 42 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTIS-------------------------------------- 42 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEEC--------------------------------------
Confidence 78999999998 478999988865555779999999
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCCC
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 194 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~ 194 (608)
+++||.|||.+.+.+... ...+.+++||++.++++|+||.+.+++.+++.... ...|.++|.++
T Consensus 43 ~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~---~~~~~~~~~~~ 106 (120)
T cd04045 43 NTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNE---DGKYVEYDDEE 106 (120)
T ss_pred CCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCCCC---CceEEecCCCc
Confidence 999999999776666443 36899999999999999999999999999775422 35677777663
No 36
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=98.99 E-value=8.8e-10 Score=98.78 Aligned_cols=86 Identities=21% Similarity=0.393 Sum_probs=72.0
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
|.+.|+|++|+ .+.+|||+.+. ++....+|++++ -
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~-~~~~~~kT~~~~-------------------------------------~ 42 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLR-IGGVTKKTKTDF-------------------------------------R 42 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEE-ECCCcccccccc-------------------------------------C
Confidence 78999999999 47899998774 666889999885 0
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ 178 (608)
.++||+|||.+.+.+..+....+.++|||++..+ +++||.+.+++.+++..
T Consensus 43 ~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~ 93 (118)
T cd08681 43 GGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDLIGDTEVDLSPALKE 93 (118)
T ss_pred CCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-CcceEEEEEecHHHhhc
Confidence 4799999998888886655578999999999976 89999999999997553
No 37
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=98.98 E-value=1.2e-09 Score=97.61 Aligned_cols=84 Identities=20% Similarity=0.426 Sum_probs=72.0
Q ss_pred EEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccC
Q 007303 55 IALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCS 127 (608)
Q Consensus 55 ~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 127 (608)
|++|++++|+ .+.+|||+.+. ++.+..+|++++ +
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~-~~~~~~kT~v~~--------------------------------------~ 41 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFR-LGNEKYKSKVCS--------------------------------------K 41 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEE-ECCEeEeccccc--------------------------------------C
Confidence 4788899988 37889998774 577889999999 9
Q ss_pred CCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 128 TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 128 tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
|+||.|||.|.+.+.......+.++|||+|.++++|++|.+.+++.++..
T Consensus 42 t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~ 91 (116)
T cd08376 42 TLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPR 91 (116)
T ss_pred CCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCC
Confidence 99999999888777555567899999999999999999999999999643
No 38
>PTZ00183 centrin; Provisional
Probab=98.97 E-value=8.8e-10 Score=103.30 Aligned_cols=62 Identities=23% Similarity=0.525 Sum_probs=34.3
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 280 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~ 280 (608)
++.+|+.+|.+++|.|+.+||..++...+..++.++++.+|..+|.|++|.|+++||..++.
T Consensus 92 l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 92 ILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 45555555555555555555555555555555555555555555555555555555555553
No 39
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.97 E-value=1.3e-09 Score=99.19 Aligned_cols=93 Identities=16% Similarity=0.248 Sum_probs=76.8
Q ss_pred cccccceeeEEEEEEeeee--------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHH
Q 007303 46 VLNEEDFAGIALLTLISAE--------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLT 113 (608)
Q Consensus 46 ~~~~~~~~~~~~~~~~~a~--------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~ 113 (608)
.+.-+.-.|.+.|+|++|+ .+.+|||+.++..+. ...||++++
T Consensus 7 sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~------------------------- 61 (125)
T cd04029 7 SLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR------------------------- 61 (125)
T ss_pred EEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-------------------------
Confidence 4445566788999999999 167999999875532 357999999
Q ss_pred HHHHHhhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 114 LFSFLFVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 114 ~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+++||.|||.|.+.+..+ ....+.++|||+|.++++|+||++.+++..+-
T Consensus 62 -------------~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (125)
T cd04029 62 -------------NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN 113 (125)
T ss_pred -------------CCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc
Confidence 999999999888887443 45679999999999999999999999999863
No 40
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.97 E-value=1.4e-09 Score=102.03 Aligned_cols=100 Identities=23% Similarity=0.277 Sum_probs=78.6
Q ss_pred EEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccC
Q 007303 55 IALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCS 127 (608)
Q Consensus 55 ~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 127 (608)
++.|+|++|+ .+.+|||+.+ .++.+..+|++++ .
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v-~l~~~~~kTk~~~--------------------------------------~ 41 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKA-QLGNQVLRTRPSQ--------------------------------------T 41 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEE-EECCEEeeeEecc--------------------------------------C
Confidence 3789999999 3789999766 6677999999997 6
Q ss_pred -CCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCcc-hh-hhhhhccCCC
Q 007303 128 -TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD-AD-SEVFDLLDPS 193 (608)
Q Consensus 128 -tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~-~~-~eiF~~~D~d 193 (608)
|+||+|||.|.+.+.......+.+.|+|++..+++|+||.+.+++.++...... .. ..+|.+.+..
T Consensus 42 ~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~ 110 (150)
T cd04019 42 RNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPG 110 (150)
T ss_pred CCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCC
Confidence 699999998888885544467899999999999999999999999996543221 11 4567766553
No 41
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.96 E-value=1.9e-09 Score=97.82 Aligned_cols=85 Identities=18% Similarity=0.322 Sum_probs=73.7
Q ss_pred eEEEEEEeeee---------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhc
Q 007303 54 GIALLTLISAE---------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFF 124 (608)
Q Consensus 54 ~~~~~~~~~a~---------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 124 (608)
|++.|+++.|+ .+..|||+.+ .++.+.++|++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v-~~~~~~~kT~~~~------------------------------------ 43 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAIL-SVGAQRFKTQTIP------------------------------------ 43 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEE-EECCEEEecceec------------------------------------
Confidence 78999999998 2578999765 5678889999999
Q ss_pred ccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 125 WCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 125 ~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+|+||.||+.|.+.+.......+.++|||+|..+++|++|.+.+++.++..
T Consensus 44 --~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~ 94 (128)
T cd04024 44 --NTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFA 94 (128)
T ss_pred --CCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhc
Confidence 999999999888888665557899999999999999999999999999653
No 42
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=98.96 E-value=1.4e-09 Score=98.43 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=72.9
Q ss_pred eeEEEEEEeeee------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 53 AGIALLTLISAE------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 53 ~~~~~~~~~~a~------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
.|.+.|+|+.|+ .+.+|||+++...++ ...||++++
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~---------------------------------- 57 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVR---------------------------------- 57 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccC----------------------------------
Confidence 689999999999 257899999876543 468999999
Q ss_pred hcccCCCCCccccccceee-c--cCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 123 FFWCSTDKPIWNSEKKLLL-E--TNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~v-e--~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+++||.|||+|.+.+ . ......+.++|||+|.++++|++|.+.+++.++.
T Consensus 58 ----~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 58 ----KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD 110 (122)
T ss_pred ----CCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence 999999999887765 2 2245789999999999999999999999999964
No 43
>PTZ00183 centrin; Provisional
Probab=98.96 E-value=4.1e-09 Score=98.74 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=94.6
Q ss_pred ccCcchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh-cCcc
Q 007303 177 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-GNQV 250 (608)
Q Consensus 177 s~ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l-g~~~ 250 (608)
++.+... ...|..+|++++|.| +..++..++. .+.... +..+|..+|.+++|.|+++||..++... ....
T Consensus 12 ~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~-~~~~~~---~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 12 TEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGF-EPKKEE---IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCC-CCCHHH---HHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCC
Confidence 3334444 778999999999999 4445555533 333333 8999999999999999999999988763 3455
Q ss_pred cHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCcc
Q 007303 251 AANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTM 308 (608)
Q Consensus 251 ~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di 308 (608)
..++++.+|+.+|.|++|.|+.+||..++...+..... ..+.+++...|.+++.
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~----~~~~~~~~~~d~~~~g 141 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITD----EELQEMIDEADRNGDG 141 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCH----HHHHHHHHHhCCCCCC
Confidence 67789999999999999999999999999877654433 4577777777755543
No 44
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.95 E-value=1.7e-09 Score=97.06 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=79.1
Q ss_pred eEEEEEEeeee----e---------ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 54 GIALLTLISAE----M---------KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 54 ~~~~~~~~~a~----~---------~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
|++.|++++|+ . +.+|||+++. ++.+.++|++++
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~-~~~~~~kT~~~~-------------------------------- 47 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVR-VGAQTFKSKVIK-------------------------------- 47 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEE-ECCEeEEccccC--------------------------------
Confidence 78999999998 1 3689997774 566899999999
Q ss_pred hhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCCCCchh
Q 007303 121 ISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSSNKI 198 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~dGkI 198 (608)
+++||+|||.|.+.+.......+.++|||+|.. ++|++|.+.+++.++...... ...|.+.+. ..|+|
T Consensus 48 ------~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~--~~w~~L~~~-~~G~~ 115 (121)
T cd08391 48 ------ENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFI--DEWLPLEDV-KSGRL 115 (121)
T ss_pred ------CCCCCcccceEEEEeCCCCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCcc--ceEEECcCC-CCceE
Confidence 999999999888877655567899999999998 899999999999997543222 334554432 34543
No 45
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=98.95 E-value=1.5e-09 Score=97.54 Aligned_cols=83 Identities=13% Similarity=0.249 Sum_probs=69.8
Q ss_pred EEEEEeeee-------eccCCCceEEEec--CcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSL--GEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~--~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
+.|++++|+ .+.+|||+.+... +....||++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-------------------------------------- 43 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-------------------------------------- 43 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec--------------------------------------
Confidence 678899988 3689999887643 24678999999
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+|.||+|||.|.+.+.......+.++|||+|.+ ++|++|.+.+++.++..
T Consensus 44 ~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~ 93 (119)
T cd04036 44 NSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKL 93 (119)
T ss_pred CCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcccEEEEEEHHHCCC
Confidence 999999999888877655556799999999999 99999999999999653
No 46
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=98.92 E-value=1.8e-09 Score=98.23 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=72.8
Q ss_pred eeeEEEEEEeeee-------e-ccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHh
Q 007303 52 FAGIALLTLISAE-------M-KFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLF 119 (608)
Q Consensus 52 ~~~~~~~~~~~a~-------~-~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (608)
-.+.+.|+++.|+ . +.+|||+.++.++. ...||++++
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~------------------------------- 61 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK------------------------------- 61 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-------------------------------
Confidence 3478999999999 2 57899999876543 357999999
Q ss_pred hhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 120 VISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 120 ~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+|+||+|||.|.+.+... ....+.++|||+|.++++|+||.+.+++.++
T Consensus 62 -------~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 62 -------KTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred -------CCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 999999999888877432 4568999999999999999999999999995
No 47
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.92 E-value=3.9e-09 Score=95.20 Aligned_cols=89 Identities=25% Similarity=0.404 Sum_probs=74.5
Q ss_pred eeEEEEEEeeee----e----ccCCCceEEEecC-cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhh
Q 007303 53 AGIALLTLISAE----M----KFKDKWLACVSLG-EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISF 123 (608)
Q Consensus 53 ~~~~~~~~~~a~----~----~~~d~~~~~~~~~-~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 123 (608)
.|++.|++++|+ . +..|||+.+...+ ...++|++++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~----------------------------------- 45 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK----------------------------------- 45 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-----------------------------------
Confidence 388999999998 1 3579998775555 4889999999
Q ss_pred cccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCc
Q 007303 124 FWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDS 180 (608)
Q Consensus 124 ~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee 180 (608)
+++||.|||.+.+.+. .....+.++|||++..++++++|.+.+++.+++....
T Consensus 46 ---~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 98 (124)
T cd04044 46 ---DTSNPVWNETKYILVN-SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPE 98 (124)
T ss_pred ---CCCCCcceEEEEEEeC-CCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCcc
Confidence 9999999998877776 4457899999999999999999999999999765433
No 48
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=98.92 E-value=2.1e-09 Score=98.12 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=74.0
Q ss_pred ceeeEEEEEEeeee-------e-ccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHH
Q 007303 51 DFAGIALLTLISAE-------M-KFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFL 118 (608)
Q Consensus 51 ~~~~~~~~~~~~a~-------~-~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 118 (608)
.-.+.+.|+|+.|+ . +..|||++++.++. ...||++++
T Consensus 12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~------------------------------ 61 (128)
T cd08392 12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK------------------------------ 61 (128)
T ss_pred CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc------------------------------
Confidence 34478999999999 1 67899999876654 367999999
Q ss_pred hhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 119 FVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 119 ~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
.++||+|||.|.+.+..+ ....+.+.|||++.++++|+||++.+++.++
T Consensus 62 --------~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~ 112 (128)
T cd08392 62 --------GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADW 112 (128)
T ss_pred --------CCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCc
Confidence 999999999888887443 4578999999999999999999999999996
No 49
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.92 E-value=2.8e-09 Score=96.49 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=77.0
Q ss_pred cccccceeeEEEEEEeeee-------eccCCCceEEEec--CcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHH
Q 007303 46 VLNEEDFAGIALLTLISAE-------MKFKDKWLACVSL--GEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFS 116 (608)
Q Consensus 46 ~~~~~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~--~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 116 (608)
.+.-..-.|.+.|+|++|+ .+.+|||+.+... +....||++++
T Consensus 8 sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~---------------------------- 59 (124)
T cd08387 8 SLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK---------------------------- 59 (124)
T ss_pred EEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc----------------------------
Confidence 3444455689999999999 3789999888653 35679999999
Q ss_pred HHhhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 117 FLFVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 117 ~~~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+++||+|||.|.+.+... ....+.++|||+|.++++|++|.+.+++.++..
T Consensus 60 ----------~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~ 112 (124)
T cd08387 60 ----------KTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDL 112 (124)
T ss_pred ----------CCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccC
Confidence 999999999877776433 346799999999999999999999999999643
No 50
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.92 E-value=2.5e-09 Score=96.75 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=75.2
Q ss_pred cceeeEEEEEEeeee-------eccCCCceEEEecCc--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 50 EDFAGIALLTLISAE-------MKFKDKWLACVSLGE--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 50 ~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
+.-.|.+.|+|++|+ .+..|||+.+...++ ...||++++
T Consensus 12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-------------------------------- 59 (124)
T cd08385 12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-------------------------------- 59 (124)
T ss_pred eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc--------------------------------
Confidence 335589999999999 378899999875543 578999999
Q ss_pred hhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 121 ISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+++||+|||.|.+.+... ....+.++|||+|.++++|++|.+.+++.++..
T Consensus 60 ------~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~ 112 (124)
T cd08385 60 ------KTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDL 112 (124)
T ss_pred ------CCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccC
Confidence 999999999888877432 346799999999999999999999999999643
No 51
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=3.1e-09 Score=97.54 Aligned_cols=124 Identities=18% Similarity=0.375 Sum_probs=96.0
Q ss_pred CcceeeEEeeccccccCCcCcceeeecccc------cccCcchh--hhhhhccCCCCCchh-hHHH----HhhcCCCCCh
Q 007303 146 PHVARISVFETNRLSKSNLEGYCEVDLLEF------LTKDSDAD--SEVFDLLDPSSSNKI-VGKI----SLSCSVEDPI 212 (608)
Q Consensus 146 ~~~l~~~v~D~D~~s~~D~iG~~~i~l~el------Ls~ee~~~--~eiF~~~D~d~dGkI-l~el----l~~l~~~~~~ 212 (608)
.....|+.+|.|. .+.++..++ +.-+.... .++...+|.++.|+| +.++ ...++... +
T Consensus 34 ~i~e~f~lfd~~~--------~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~d-t 104 (172)
T KOG0028|consen 34 EIKEAFELFDPDM--------AGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERD-T 104 (172)
T ss_pred hHHHHHHhhccCC--------CCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccC-c
Confidence 3445577777666 556777776 22222222 557778888899999 4333 33444333 4
Q ss_pred hhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 213 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 213 ~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
.++ ++.+|+.+|.|++|.|+..+|+.++..+|+.+++++++++++.+|.|+||-|+.+||.++++.
T Consensus 105 ~eE---i~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEE---IKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHH---HHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 445 899999999999999999999999999999999999999999999999999999999998864
No 52
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=98.91 E-value=3.2e-09 Score=95.98 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=70.1
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|++++|+ .+.+|||+.+. .+...++|++++ +|
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~-~~~~~~kT~v~~--------------------------------------~t 42 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVF-YNGQTLETSVVK--------------------------------------KS 42 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEE-ECCEEEeceeec--------------------------------------CC
Confidence 568888888 26789998774 567789999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+||.|||.|.+.+.......+.++|||+|..+++|+||.+.+++.++..
T Consensus 43 ~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~ 91 (123)
T cd04025 43 CYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQ 91 (123)
T ss_pred CCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHccc
Confidence 9999999887777555456799999999999999999999999999643
No 53
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.91 E-value=3.2e-09 Score=96.40 Aligned_cols=84 Identities=19% Similarity=0.222 Sum_probs=69.8
Q ss_pred EEEEEEeeee-------eccCCCceEEEecCcc-eEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 55 IALLTLISAE-------MKFKDKWLACVSLGEQ-TCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 55 ~~~~~~~~a~-------~~~~d~~~~~~~~~~~-~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
+++|++++|+ .+.+|||+.+...+.. ..||++++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~-------------------------------------- 42 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIP-------------------------------------- 42 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEE--------------------------------------
Confidence 3678888888 4899999887654433 36899999
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+|+||+|||.+.+.+.......+.++|||+|.++++|++|.+.+++.+..
T Consensus 43 ~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 43 NTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 99999999988777655556789999999999999999999999999864
No 54
>PTZ00184 calmodulin; Provisional
Probab=98.91 E-value=2.9e-09 Score=98.47 Aligned_cols=64 Identities=25% Similarity=0.466 Sum_probs=30.3
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHh-cCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~l-g~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
++.+|+.+|.+++|.|+++||..++... ......+.++.+|+.+|.|++|.|+.+||..++...
T Consensus 49 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~ 113 (149)
T PTZ00184 49 LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL 113 (149)
T ss_pred HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH
Confidence 4455555555555555555555444432 112233344455555555555555555555544443
No 55
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.90 E-value=3.1e-09 Score=94.35 Aligned_cols=98 Identities=19% Similarity=0.213 Sum_probs=75.3
Q ss_pred EEEEEEeeee---eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCC
Q 007303 55 IALLTLISAE---MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKP 131 (608)
Q Consensus 55 ~~~~~~~~a~---~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP 131 (608)
-+.|+|++|+ .+..|||+++ .++.+..+|++++ +++||
T Consensus 5 ~l~V~v~~a~~L~~~~~dpyv~v-~~~~~~~kT~~~~--------------------------------------~t~nP 45 (111)
T cd04011 5 QVRVRVIEARQLVGGNIDPVVKV-EVGGQKKYTSVKK--------------------------------------GTNCP 45 (111)
T ss_pred EEEEEEEEcccCCCCCCCCEEEE-EECCEeeeeeEEe--------------------------------------ccCCC
Confidence 3678888888 4789999766 5667789999999 99999
Q ss_pred ccccccceeeccC----CCcceeeEEeeccccccCCcCcceeeecccccccCcchh-hhhhhccC
Q 007303 132 IWNSEKKLLLETN----GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDLLD 191 (608)
Q Consensus 132 ~wne~~~~~ve~~----~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~-~eiF~~~D 191 (608)
.|||.|.+.+... ....+.++|+|++.++++++||.+.+++.++........ ..++.+.|
T Consensus 46 ~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 46 FYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9999777765332 235799999999999999999999999999764433222 44555544
No 56
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.90 E-value=3.4e-09 Score=94.57 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=64.3
Q ss_pred EEEEEeeee--eccCCCceEEEecC--c--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCC
Q 007303 56 ALLTLISAE--MKFKDKWLACVSLG--E--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTD 129 (608)
Q Consensus 56 ~~~~~~~a~--~~~~d~~~~~~~~~--~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tl 129 (608)
+.|++.+|+ -+.+|||+++...+ + ...+|++++ .|+
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~--------------------------------------~Tl 42 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCR--------------------------------------DTT 42 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeec--------------------------------------CCC
Confidence 357888888 47799999985433 2 469999999 999
Q ss_pred CCccccccceeeccCCCcceeeEEeec-------cccccCCcCcceeeeccc
Q 007303 130 KPIWNSEKKLLLETNGPHVARISVFET-------NRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 130 nP~wne~~~~~ve~~~~~~l~~~v~D~-------D~~s~~D~iG~~~i~l~e 174 (608)
||+|||+|.+.++ ..+.+.+.|||| |..++||++|.+.+.+..
T Consensus 43 nPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 43 EPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCccceEEEEEeC--CCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 9999998887775 357899999999 677899999888877754
No 57
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.89 E-value=3.5e-09 Score=93.09 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=74.1
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|+|++|+ .+..|||+.+ .++.+..+|++++ +|
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v-~~~~~~~kT~v~~--------------------------------------~t 42 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVEL-TVGKTTQKSKVKE--------------------------------------RT 42 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEE-EECCEEEeCcccc--------------------------------------CC
Confidence 678889888 3788999766 6677999999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccC
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLD 191 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D 191 (608)
.||.|||.|.+.+.......+.++|+|++. ++++|.+.+++.+++..........|.+.+
T Consensus 43 ~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 43 NNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred CCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 999999999998876555679999999987 789999999999976432111144565543
No 58
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.89 E-value=4.8e-09 Score=95.02 Aligned_cols=83 Identities=23% Similarity=0.388 Sum_probs=70.7
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|++++|+ .+.+|||+.+...|.+.+||++++ ++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~--------------------------------------~t 43 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK--------------------------------------KT 43 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc--------------------------------------CC
Confidence 578888888 478999988865568889999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeecccccc--CCcCcceeeeccccccc
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRLSK--SNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~--~D~iG~~~i~l~elLs~ 178 (608)
+||.|||.|.+.+.. ...+.++|||++.+++ ++++|.+.+++.+++..
T Consensus 44 ~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~ 93 (123)
T cd08382 44 LDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPL 93 (123)
T ss_pred CCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCceEeEEEEEHHHcccc
Confidence 999999988888754 4689999999999876 47999999999997643
No 59
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.89 E-value=3.9e-09 Score=95.40 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=75.6
Q ss_pred EEEEEeeee----eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCC
Q 007303 56 ALLTLISAE----MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKP 131 (608)
Q Consensus 56 ~~~~~~~a~----~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP 131 (608)
+.|+|++|+ + .+|||+.+. ++....||++++ +|+||
T Consensus 2 L~V~Vi~a~~L~~~-~~Dpyv~v~-l~~~~~kT~v~~--------------------------------------~t~nP 41 (121)
T cd08378 2 LYVRVVKARGLPAN-SNDPVVEVK-LGNYKGSTKAIE--------------------------------------RTSNP 41 (121)
T ss_pred EEEEEEEecCCCcc-cCCCEEEEE-ECCccccccccC--------------------------------------CCCCC
Confidence 678888888 3 789987764 566789999999 99999
Q ss_pred ccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCcc-h-h-hhhhhccCCC
Q 007303 132 IWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSD-A-D-SEVFDLLDPS 193 (608)
Q Consensus 132 ~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~-~-~-~eiF~~~D~d 193 (608)
+|||+|.+.+.......+.++|||+|.. ++|++|.+.+++.++...... . . ...|.+.+..
T Consensus 42 ~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~ 105 (121)
T cd08378 42 EWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK 105 (121)
T ss_pred ccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC
Confidence 9999888877554557899999999987 889999999999997543221 1 1 3566665554
No 60
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=98.88 E-value=3.4e-09 Score=95.45 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=64.0
Q ss_pred eccCCCceEEEecCcc------eEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccc
Q 007303 65 MKFKDKWLACVSLGEQ------TCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKK 138 (608)
Q Consensus 65 ~~~~d~~~~~~~~~~~------~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~ 138 (608)
.+.+|||+.+...+.. ..+|++++ +|+||+|||.+.
T Consensus 18 ~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~--------------------------------------~t~nP~wne~f~ 59 (120)
T cd04048 18 LSKSDPFVVVYVKTGGSGQWVEIGRTEVIK--------------------------------------NNLNPDFVTTFT 59 (120)
T ss_pred CCCCCcEEEEEEEcCCCCceEEeccEeEeC--------------------------------------CCCCCCceEEEE
Confidence 4789999988765543 58999999 999999999777
Q ss_pred eeeccCCCcceeeEEeeccc----cccCCcCcceeeeccccccc
Q 007303 139 LLLETNGPHVARISVFETNR----LSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 139 ~~ve~~~~~~l~~~v~D~D~----~s~~D~iG~~~i~l~elLs~ 178 (608)
+.+..+....+.++|||+|. .+++|++|.+.+++.+++..
T Consensus 60 f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~ 103 (120)
T cd04048 60 VDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSS 103 (120)
T ss_pred EEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcC
Confidence 76544445679999999997 89999999999999997654
No 61
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.88 E-value=1.1e-09 Score=114.16 Aligned_cols=85 Identities=19% Similarity=0.333 Sum_probs=73.4
Q ss_pred eEEEEEEeeee----e---ccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 54 GIALLTLISAE----M---KFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 54 ~~~~~~~~~a~----~---~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
..+.|++..|+ | |+||||+++...++ ...+|+.++
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik---------------------------------- 225 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK---------------------------------- 225 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh----------------------------------
Confidence 47788888888 3 99999999875544 457899999
Q ss_pred hcccCCCCCccccccceee-ccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 123 FFWCSTDKPIWNSEKKLLL-ETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~v-e~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
.||||+|||+|++.+ .+|.++.+.++|||||+-+++|+||...+.++|++
T Consensus 226 ----~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~ 276 (683)
T KOG0696|consen 226 ----ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ 276 (683)
T ss_pred ----hhcCccccceeEEecccccccceeEEEEecccccccccccceecccHHHHh
Confidence 999999999888777 56677999999999999999999999999999964
No 62
>PTZ00184 calmodulin; Provisional
Probab=98.88 E-value=1.1e-08 Score=94.48 Aligned_cols=124 Identities=14% Similarity=0.315 Sum_probs=93.7
Q ss_pred eeeEEeeccccccCCcCcceeeeccccc------ccCcch-h-hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHHH
Q 007303 149 ARISVFETNRLSKSNLEGYCEVDLLEFL------TKDSDA-D-SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFA 219 (608)
Q Consensus 149 l~~~v~D~D~~s~~D~iG~~~i~l~elL------s~ee~~-~-~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~l 219 (608)
..|..+|.++ .+.++..++. ...... . ..+|..+|.+++|.| +.++...+............+
T Consensus 15 ~~F~~~D~~~--------~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~ 86 (149)
T PTZ00184 15 EAFSLFDKDG--------DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEI 86 (149)
T ss_pred HHHHHHcCCC--------CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHH
Confidence 3455666665 6678888862 111222 2 778999999999999 666655443111111112238
Q ss_pred HHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 007303 220 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 280 (608)
Q Consensus 220 ~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~ 280 (608)
+.+|+.+|.|++|.|+.+||..++...+...+.++++.+|..+|.+++|.|+++||..++.
T Consensus 87 ~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 87 KEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 9999999999999999999999999988888999999999999999999999999998874
No 63
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=98.87 E-value=5e-09 Score=94.72 Aligned_cols=82 Identities=11% Similarity=0.158 Sum_probs=67.0
Q ss_pred EEEEEeeee--------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccC
Q 007303 56 ALLTLISAE--------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCS 127 (608)
Q Consensus 56 ~~~~~~~a~--------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 127 (608)
+.|+++.|+ .+.+|||+.+...+....+|++++ +
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~--------------------------------------k 43 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE--------------------------------------K 43 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE--------------------------------------C
Confidence 456677776 157899988754444579999999 9
Q ss_pred CCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 128 TDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 128 tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
|+||+|||.|.+.+... ...+.+.+||+|.++++|++|.+.+++.++.
T Consensus 44 t~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~ 91 (121)
T cd08401 44 SLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLH 91 (121)
T ss_pred CCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceEEEEEEEHHHcc
Confidence 99999999888777533 4689999999999999999999999999964
No 64
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=98.87 E-value=5.7e-09 Score=94.86 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=69.2
Q ss_pred EEEEEeeee-----eccCCCceEEEecC-cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCC
Q 007303 56 ALLTLISAE-----MKFKDKWLACVSLG-EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTD 129 (608)
Q Consensus 56 ~~~~~~~a~-----~~~~d~~~~~~~~~-~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tl 129 (608)
+.|++++|+ .+.+|||+.+...+ .+..+|++++ +|+
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~--------------------------------------~t~ 42 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQK--------------------------------------NTS 42 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEe--------------------------------------cCC
Confidence 357777776 37999998886433 3568999999 999
Q ss_pred CCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccC
Q 007303 130 KPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKD 179 (608)
Q Consensus 130 nP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~e 179 (608)
||+|||.+.+.+... ...+.++|||+|..+++|++|.+.+++.++....
T Consensus 43 nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~ 91 (126)
T cd08678 43 NPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNP 91 (126)
T ss_pred CCccCceEEEEeCCC-CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCC
Confidence 999999887777432 4679999999999999999999999999976443
No 65
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.87 E-value=5.5e-09 Score=95.99 Aligned_cols=87 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEecC------cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHh
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSLG------EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLF 119 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~~------~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (608)
.+.+.|++++|+ .+..|||+.+...+ ....||++++
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~------------------------------- 63 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK------------------------------- 63 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-------------------------------
Confidence 368999999998 37899998887553 3579999999
Q ss_pred hhhhcccCCCCCccccccceeecc----CCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 120 VISFFWCSTDKPIWNSEKKLLLET----NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 120 ~~~~~~~~tlnP~wne~~~~~ve~----~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+|+||+|||.|.+.+.. .....+.++|||+|.++++|+||.+.+++.++..
T Consensus 64 -------~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 64 -------KTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred -------CCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 99999999988887743 2346799999999999999999999999999753
No 66
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.86 E-value=4.3e-09 Score=95.56 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=74.7
Q ss_pred eeeEEEEEEeeee----e---ccCCCceEEEecCcc-----eEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHh
Q 007303 52 FAGIALLTLISAE----M---KFKDKWLACVSLGEQ-----TCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLF 119 (608)
Q Consensus 52 ~~~~~~~~~~~a~----~---~~~d~~~~~~~~~~~-----~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (608)
-.|-+.|+|+.|+ + +.+|||+.++.+++. ..||++++
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~------------------------------- 60 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE------------------------------- 60 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-------------------------------
Confidence 3478999999998 2 678999999876543 68999999
Q ss_pred hhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 120 VISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 120 ~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
.++||+|||.|.+.+..+ .+..+.++|||+|.++++|+||.+.+++.++
T Consensus 61 -------~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 61 -------DQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred -------CCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 999999999998888443 5688999999999999999999999999996
No 67
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.85 E-value=4.7e-09 Score=94.91 Aligned_cols=89 Identities=16% Similarity=0.267 Sum_probs=73.5
Q ss_pred cccceeeEEEEEEeeee-------eccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHH
Q 007303 48 NEEDFAGIALLTLISAE-------MKFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFS 116 (608)
Q Consensus 48 ~~~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 116 (608)
.-....|.+.|+|++|+ .+..|||+.+...+ ....||++++
T Consensus 10 ~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~---------------------------- 61 (125)
T cd04031 10 WYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK---------------------------- 61 (125)
T ss_pred EEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC----------------------------
Confidence 33445688999999998 37899999987654 3578999999
Q ss_pred HHhhhhhcccCCCCCccccccceee-c-cC-CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 117 FLFVISFFWCSTDKPIWNSEKKLLL-E-TN-GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 117 ~~~~~~~~~~~tlnP~wne~~~~~v-e-~~-~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+|+||+|||.|.+.+ . .+ ....+.++|||+|.++++|++|.+.+++.+
T Consensus 62 ----------~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 62 ----------KTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred ----------CCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 999999999777764 2 11 346799999999999999999999999998
No 68
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.85 E-value=7e-09 Score=94.71 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=69.9
Q ss_pred eeEEEEEEeeee-------e-ccCCCceEEEecC--cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 53 AGIALLTLISAE-------M-KFKDKWLACVSLG--EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~-~~~d~~~~~~~~~--~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
.+.+.|+|++|+ . +..|||+.+...+ .+..||++++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~---------------------------------- 60 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR---------------------------------- 60 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc----------------------------------
Confidence 368999999999 3 6779998875443 3567999999
Q ss_pred hcccCCCCCcccccccee-ecc--CCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 123 FFWCSTDKPIWNSEKKLL-LET--NGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~-ve~--~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+|+||+|||.|.+. +.. -....+.++|||+|.++++|++|.+.+++.++
T Consensus 61 ----~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l 112 (128)
T cd08388 61 ----KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGA 112 (128)
T ss_pred ----CCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEecccc
Confidence 99999999987772 322 24457999999999999999999999999996
No 69
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.84 E-value=6.2e-09 Score=83.34 Aligned_cols=61 Identities=23% Similarity=0.490 Sum_probs=54.0
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccH----HHHHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA----NKKEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~----eel~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
++++|+.+|.|++|.|+.+||..++..++...+. +.++.+|+.+|.|+||.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 7899999999999999999999999998865544 456667999999999999999999875
No 70
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.83 E-value=7.6e-09 Score=97.09 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=62.0
Q ss_pred cCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeecc-CC
Q 007303 67 FKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLET-NG 145 (608)
Q Consensus 67 ~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~-~~ 145 (608)
.+|||+++ .++.+..||++++ +++||+|||.+.+.+.. ..
T Consensus 34 ~~DPYV~V-~~~g~~~kT~v~~--------------------------------------~t~nPvWNE~f~f~v~~p~~ 74 (151)
T cd04018 34 LVDPYVEV-SFAGQKVKTSVKK--------------------------------------NSYNPEWNEQIVFPEMFPPL 74 (151)
T ss_pred CcCcEEEE-EECCEeeecceEc--------------------------------------CCCCCCcceEEEEEeeCCCc
Confidence 68999877 4666778999999 99999999988887633 34
Q ss_pred CcceeeEEeeccccccCCcCcceeeeccccccc
Q 007303 146 PHVARISVFETNRLSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 146 ~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ 178 (608)
...+.+++||+|..+++|++|.+.+++.++...
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 468999999999999999999999999997553
No 71
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=98.82 E-value=1.4e-08 Score=91.08 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=69.8
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
|.+.|++++|+ .+.+|||+.+. .+....+|++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~-~~~~~~~T~~~~-------------------------------------- 41 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLE-LVNARLQTHTIY-------------------------------------- 41 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEE-ECCEeeecceec--------------------------------------
Confidence 67889999998 36789998775 455668999999
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+|+||.|+|++.+.+.. ....+.++|||++..+++|++|.+.+++.++.
T Consensus 42 ~t~nP~W~e~f~~~~~~-~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~ 90 (119)
T cd08377 42 KTLNPEWNKIFTFPIKD-IHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIK 90 (119)
T ss_pred CCcCCccCcEEEEEecC-cCCEEEEEEEECCCCCCCceeeEEEEEHHHCC
Confidence 99999999977777643 24679999999999999999999999999954
No 72
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.81 E-value=8.2e-09 Score=98.19 Aligned_cols=87 Identities=17% Similarity=0.231 Sum_probs=71.9
Q ss_pred eeeEEEEEEeeee-------eccCCCceEEEec----CcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 52 FAGIALLTLISAE-------MKFKDKWLACVSL----GEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 52 ~~~~~~~~~~~a~-------~~~~d~~~~~~~~----~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
-.|.+.|+|++|+ .+..|||+.+... +....||++++
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-------------------------------- 72 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-------------------------------- 72 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC--------------------------------
Confidence 3589999999999 3788999998643 33678999999
Q ss_pred hhhcccCCCCCccccccceee---ccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 121 ISFFWCSTDKPIWNSEKKLLL---ETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~v---e~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+|+||.|||.|.+.. ++-.+..+.++|||+|.++++|++|.+.+++.++.
T Consensus 73 ------~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~ 125 (162)
T cd04020 73 ------KSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGK 125 (162)
T ss_pred ------CCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccc
Confidence 999999999777653 12234579999999999999999999999999854
No 73
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.81 E-value=1.3e-08 Score=93.33 Aligned_cols=86 Identities=15% Similarity=0.354 Sum_probs=72.4
Q ss_pred eeeEEEEEEeeee------e-----------ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHH
Q 007303 52 FAGIALLTLISAE------M-----------KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTL 114 (608)
Q Consensus 52 ~~~~~~~~~~~a~------~-----------~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~ 114 (608)
+.|++.|+|+.|+ . +..|||+.+.--+.+..+|++++
T Consensus 2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~-------------------------- 55 (132)
T cd04014 2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKP-------------------------- 55 (132)
T ss_pred cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcC--------------------------
Confidence 5699999999997 1 25799988754444567999999
Q ss_pred HHHHhhhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 115 FSFLFVISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 115 ~~~~~~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
.|+||.|||.|.+.+. ....+.+.|+|++.++.++++|.+.+++.++..
T Consensus 56 ------------~t~~P~Wne~f~~~v~--~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~ 104 (132)
T cd04014 56 ------------KTNSPVWNEEFTTEVH--NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQ 104 (132)
T ss_pred ------------CCCCCCcceeEEEEcC--CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcc
Confidence 9999999998888775 336799999999999999999999999999665
No 74
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.81 E-value=9.4e-09 Score=99.33 Aligned_cols=118 Identities=22% Similarity=0.332 Sum_probs=90.0
Q ss_pred cceeeecccccccCcchh----hhhhhccCCCCCch-h-hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHH
Q 007303 166 GYCEVDLLEFLTKDSDAD----SEVFDLLDPSSSNK-I-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEF 239 (608)
Q Consensus 166 G~~~i~l~elLs~ee~~~----~eiF~~~D~d~dGk-I-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf 239 (608)
+.+.++.++++.-..... .++++.++++++|. | +++++..+....+....+..++-+|+.||.+++|.|+.+|+
T Consensus 47 ~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel 126 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREEL 126 (187)
T ss_pred ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 466788888743222221 67899999988887 8 88887776654555444445899999999999999999999
Q ss_pred HHHHHH-hcCccc--HH----HHHHHHHHhcCCCCcccCHHHHHHHHHhhc
Q 007303 240 SDLISA-FGNQVA--AN----KKEELFKAADKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 240 ~~~l~~-lg~~~~--~e----el~~~F~~~D~d~dG~Is~eEf~~~l~~~~ 283 (608)
..++.. ++...+ ++ -++..|.++|.|+||+|+++||..++.+.|
T Consensus 127 ~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 127 KQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCc
Confidence 999988 343333 33 467889999999999999999999997653
No 75
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.81 E-value=1.4e-08 Score=90.46 Aligned_cols=84 Identities=24% Similarity=0.346 Sum_probs=70.9
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
++|+|++|+ .+..|||+.+...+....+|++++ ++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~--------------------------------------~~ 42 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIK--------------------------------------KT 42 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceec--------------------------------------CC
Confidence 367888887 367899988876666779999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+||.|||.+.+.+.......+.+++||++..++++++|.+.+++.++..
T Consensus 43 ~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~ 91 (115)
T cd04040 43 LNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEP 91 (115)
T ss_pred CCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCC
Confidence 9999999777776544457799999999999999999999999999654
No 76
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.80 E-value=1.6e-08 Score=91.95 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=68.4
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
+++.|+|++|+ .+.+|||+.+ ..+.+.++|++++
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v-~~~~~~~kT~v~~-------------------------------------- 43 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVII-KCEGESVRSPVQK-------------------------------------- 43 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEE-EECCEEEEeCccC--------------------------------------
Confidence 58999999998 3789999877 4566789999999
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+++||+|||.|.+.+.. ....+.++|||++..+ +|++|.+++++.++
T Consensus 44 ~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~~~-d~~lG~~~~~l~~~ 90 (126)
T cd04046 44 DTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNLLC-DEFLGQATLSADPN 90 (126)
T ss_pred CCCCCcccceEEEEecC-CCCEEEEEEEECCCCC-CCceEEEEEecccC
Confidence 99999999977665543 3567999999999875 79999999999874
No 77
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.79 E-value=1.2e-08 Score=92.51 Aligned_cols=90 Identities=11% Similarity=0.186 Sum_probs=74.5
Q ss_pred cceeeEEEEEEeeee-------eccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHH
Q 007303 50 EDFAGIALLTLISAE-------MKFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFL 118 (608)
Q Consensus 50 ~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 118 (608)
+.-.|.+.|++++|+ .+.+|||+.+...+ ....||++++
T Consensus 12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~------------------------------ 61 (127)
T cd04030 12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK------------------------------ 61 (127)
T ss_pred eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc------------------------------
Confidence 334588999999999 37899999887554 4679999999
Q ss_pred hhhhhcccCCCCCccccccceeeccC--CCcceeeEEeecccc--ccCCcCcceeeecccccc
Q 007303 119 FVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRL--SKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 119 ~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~--s~~D~iG~~~i~l~elLs 177 (608)
+++||+|||.|.+.+... ....+.+.|+|++.+ +++|+||.+.+++.++..
T Consensus 62 --------~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~ 116 (127)
T cd04030 62 --------DNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDL 116 (127)
T ss_pred --------CCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccc
Confidence 999999999888877433 346799999999986 789999999999999643
No 78
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.79 E-value=1.3e-08 Score=90.02 Aligned_cols=73 Identities=25% Similarity=0.358 Sum_probs=61.4
Q ss_pred eccCCCceEEEecCc-----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccce
Q 007303 65 MKFKDKWLACVSLGE-----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKL 139 (608)
Q Consensus 65 ~~~~d~~~~~~~~~~-----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~ 139 (608)
.+.+|||+.++..++ ..++|++++ +++||+|| +|.+
T Consensus 18 ~~~~DPyv~v~~~~~~~~~~~~~kT~vi~--------------------------------------~t~nP~Wn-~f~~ 58 (110)
T cd04047 18 FGKSDPFLEISRQSEDGTWVLVYRTEVIK--------------------------------------NTLNPVWK-PFTI 58 (110)
T ss_pred CCCCCeeEEEEEECCCCCEEEEEeeeEec--------------------------------------cCCCCceE-EEEE
Confidence 478999999876554 469999999 99999999 4776
Q ss_pred eec----cCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 140 LLE----TNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 140 ~ve----~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
... .+....+.++|||+|..+++|+||.+.+++.+++
T Consensus 59 ~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 59 PLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred EHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 653 2235789999999999999999999999999976
No 79
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=98.79 E-value=1.6e-08 Score=91.62 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=70.2
Q ss_pred EEEEEEeeee-------eccCCCceEEEecC--cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcc
Q 007303 55 IALLTLISAE-------MKFKDKWLACVSLG--EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFW 125 (608)
Q Consensus 55 ~~~~~~~~a~-------~~~~d~~~~~~~~~--~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 125 (608)
.+.|++++|+ .+.+|||+.+...+ ....||++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~------------------------------------- 44 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY------------------------------------- 44 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-------------------------------------
Confidence 4678888888 37899999886443 3568999999
Q ss_pred cCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 126 CSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 126 ~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+++||.|||.|.+.+.......+.++|||+|..+++|++|.+.+++.+..
T Consensus 45 -~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~ 94 (126)
T cd04043 45 -DTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKR 94 (126)
T ss_pred -CCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHH
Confidence 99999999988887755445679999999999999999999999998753
No 80
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.79 E-value=1.4e-08 Score=91.88 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=71.0
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEec--CcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhh
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSL--GEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISF 123 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~--~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 123 (608)
.+.+.|++++|+ .+..|||+.+... +....+|++++
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~----------------------------------- 59 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR----------------------------------- 59 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-----------------------------------
Confidence 368999999999 3789999988653 34678999999
Q ss_pred cccCCCCCccccccceee---ccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 124 FWCSTDKPIWNSEKKLLL---ETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 124 ~~~~tlnP~wne~~~~~v---e~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+|+||+|||.|.+.. +......+.++|+|+|.++++|++|.+.+++.++.
T Consensus 60 ---~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~ 112 (125)
T cd08386 60 ---KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD 112 (125)
T ss_pred ---CCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEeccccc
Confidence 999999999777653 12234579999999999999999999999999964
No 81
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.78 E-value=1.5e-08 Score=91.64 Aligned_cols=86 Identities=19% Similarity=0.343 Sum_probs=72.3
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
|.+.|+|++|+ .+..|||+.+ ..+.+..+|++.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v-~~~~~~~~T~~~~-------------------------------------- 41 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVII-QCRTQERKSKVAK-------------------------------------- 41 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEE-EECCEeeeeeEcC--------------------------------------
Confidence 67889999999 3688999776 4567788999988
Q ss_pred C-CCCCccccccceeeccC---CCcceeeEEeeccccccCCcCcceeeeccccccc
Q 007303 127 S-TDKPIWNSEKKLLLETN---GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 127 ~-tlnP~wne~~~~~ve~~---~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ 178 (608)
+ ++||.||+.|.+.+... ....+.++|||.+.+++++++|.+.+++.+++..
T Consensus 42 ~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~ 97 (124)
T cd04049 42 GDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEE 97 (124)
T ss_pred CCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhC
Confidence 5 89999999888777543 3467999999999999999999999999997643
No 82
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.78 E-value=1.3e-08 Score=93.23 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=72.8
Q ss_pred cceeeEEEEEEeeee-------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHH
Q 007303 50 EDFAGIALLTLISAE-------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFL 118 (608)
Q Consensus 50 ~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 118 (608)
..-.|.+.|+|++|+ .+.+|||+.+...+. ...||++++
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~------------------------------ 58 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK------------------------------ 58 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe------------------------------
Confidence 345689999999999 368999998875542 468999999
Q ss_pred hhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 119 FVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 119 ~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+++||+|||.|.+.+..+ ....+.++|||+|..+++|++|.+.+++..
T Consensus 59 --------~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 59 --------KTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred --------ccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 999999999888877443 346799999999999999999999999875
No 83
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.78 E-value=2e-08 Score=91.87 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=70.5
Q ss_pred EEEEEEeeee-------eccCCCceEEEecCc------ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 55 IALLTLISAE-------MKFKDKWLACVSLGE------QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 55 ~~~~~~~~a~-------~~~~d~~~~~~~~~~------~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
++.|+|++|+ .+.+|||+.+...+. ...+|++++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~--------------------------------- 47 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK--------------------------------- 47 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc---------------------------------
Confidence 4688999988 478999988865443 257999999
Q ss_pred hhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccC
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKD 179 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~e 179 (608)
+|+||.||+.|.+.+... ...+.++|||+|.++++|++|.+.+++.++....
T Consensus 48 -----~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~ 99 (133)
T cd04033 48 -----KTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTET 99 (133)
T ss_pred -----CCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcC
Confidence 999999999777766432 3578999999999999999999999999976543
No 84
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.77 E-value=1.8e-08 Score=90.98 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=68.3
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|++++|+ .+.+|||+++...+....||++++ .|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~--------------------------------------~t 43 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVW--------------------------------------KT 43 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEc--------------------------------------CC
Confidence 567888888 478999988755454567999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+||+|||.|.+.+.. ....+.+.+||+|.++++|++|.+.+++.++..
T Consensus 44 ~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~ 91 (121)
T cd04054 44 LNPFWGEEYTVHLPP-GFHTVSFYVLDEDTLSRDDVIGKVSLTREVISA 91 (121)
T ss_pred CCCcccceEEEeeCC-CCCEEEEEEEECCCCCCCCEEEEEEEcHHHhcc
Confidence 999999977776633 236799999999999999999999999888653
No 85
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.77 E-value=1.4e-08 Score=93.68 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=70.2
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
.+.+.|++++|+ .+.+|||+.+...+. ...+|+|++
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k--------------------------------- 60 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK--------------------------------- 60 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc---------------------------------
Confidence 468999999999 378899999875543 357899999
Q ss_pred hhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+|+||.|+|.|.+.+... ....+.++|||+|.++++|+||.+.+++..
T Consensus 61 -----~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 61 -----CTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred -----CCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 999999999887777432 446788999999999999999999998887
No 86
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.77 E-value=1.1e-08 Score=95.65 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=68.7
Q ss_pred EEEEEeeee-----eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 56 ALLTLISAE-----MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 56 ~~~~~~~a~-----~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
+.|+|+.|+ .|.+|||+.+.-.+. ...||++++
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-------------------------------------- 43 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKK-------------------------------------- 43 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEe--------------------------------------
Confidence 567888887 378999988865553 578999999
Q ss_pred CCCCCccccccceeecc--------------C-CCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 127 STDKPIWNSEKKLLLET--------------N-GPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~--------------~-~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+|+||+|||.|.|.+.. + ....+.+.|||++..+++|+||.+.+++.++..
T Consensus 44 ~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~ 109 (148)
T cd04010 44 KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDL 109 (148)
T ss_pred CCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccc
Confidence 99999999988887731 1 235689999999999999999999999999543
No 87
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.77 E-value=1.8e-08 Score=91.61 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=69.7
Q ss_pred EEEEEEeeee------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 55 IALLTLISAE------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 55 ~~~~~~~~a~------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
.+.|++++|+ .+..|||+.+..-+....+|++++ ++
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~--------------------------------------~t 44 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSK--------------------------------------KT 44 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeC--------------------------------------CC
Confidence 4678888887 467899987754344489999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccccc
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ 178 (608)
+||.|||.|.+.+.. ...+.++|||++..+.+|++|.+.+++.+++..
T Consensus 45 ~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 45 SNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLLGEASLDLSDILKN 92 (125)
T ss_pred CCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhh
Confidence 999999988777643 367999999999999999999999999997643
No 88
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.76 E-value=1.3e-08 Score=92.61 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=68.7
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|+|++|+ .+.+|||+.+ .++.+..||++++ ++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v-~~~~~~~rT~v~~--------------------------------------~t 42 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVEL-DFDGQKKRTRTKP--------------------------------------KD 42 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEE-EECCEEecceeEc--------------------------------------CC
Confidence 578899988 3778999766 5667889999999 99
Q ss_pred CCCccccccceeeccC---CCcceeeEEeeccccc-cCCcCcceeeeccccc
Q 007303 129 DKPIWNSEKKLLLETN---GPHVARISVFETNRLS-KSNLEGYCEVDLLEFL 176 (608)
Q Consensus 129 lnP~wne~~~~~ve~~---~~~~l~~~v~D~D~~s-~~D~iG~~~i~l~elL 176 (608)
+||.|||.|.+.+... ....+.++|||++.++ ++|++|.+.+++.++.
T Consensus 43 ~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~ 94 (127)
T cd04022 43 LNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFV 94 (127)
T ss_pred CCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcC
Confidence 9999999888877432 2357999999999987 8999999999999965
No 89
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.76 E-value=1.8e-08 Score=90.84 Aligned_cols=90 Identities=16% Similarity=0.271 Sum_probs=73.9
Q ss_pred ccceeeEEEEEEeeee--------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHH
Q 007303 49 EEDFAGIALLTLISAE--------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFS 116 (608)
Q Consensus 49 ~~~~~~~~~~~~~~a~--------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 116 (608)
-+.-.|.+.|+|+.|+ .+..|||+.+..++. ...+|++++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~---------------------------- 60 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK---------------------------- 60 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccC----------------------------
Confidence 3445588999999999 257899999875543 458999999
Q ss_pred HHhhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 117 FLFVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 117 ~~~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+++||+|||.|.+.+... ....+.++|||+|.+++++++|.+.+++.++.
T Consensus 61 ----------~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~ 112 (123)
T cd08521 61 ----------NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWD 112 (123)
T ss_pred ----------CCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEeccccc
Confidence 999999999888776443 34679999999999999999999999999963
No 90
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=98.75 E-value=2.8e-08 Score=94.12 Aligned_cols=85 Identities=15% Similarity=0.333 Sum_probs=64.8
Q ss_pred cCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeeccCCC
Q 007303 67 FKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLETNGP 146 (608)
Q Consensus 67 ~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~~~ 146 (608)
.+|||+.+.--+.+..||++++ +++||+|||.|.+.+... .
T Consensus 57 ~sDPYv~V~l~~~~~~rT~v~~--------------------------------------~~~nP~WnE~F~~~~~~~-~ 97 (158)
T cd04015 57 TSDPYATVDLAGARVARTRVIE--------------------------------------NSENPVWNESFHIYCAHY-A 97 (158)
T ss_pred CcCeEEEEEECCeEeeEEEEeC--------------------------------------CCCCCccceEEEEEccCC-C
Confidence 4799988764445667999999 999999999888877443 3
Q ss_pred cceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCC
Q 007303 147 HVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 193 (608)
Q Consensus 147 ~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d 193 (608)
..+.++|+|+|.++ +|+||.+.+++.++...... ..++.+.+.+
T Consensus 98 ~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~--~~w~~L~~~~ 141 (158)
T cd04015 98 SHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPV--EGWLPILDSN 141 (158)
T ss_pred CEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCc--ceEEECcCCC
Confidence 57999999999885 58999999999997643322 3456665543
No 91
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=98.74 E-value=3.4e-08 Score=89.87 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=66.9
Q ss_pred eEEEEEEeeee----eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCC
Q 007303 54 GIALLTLISAE----MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTD 129 (608)
Q Consensus 54 ~~~~~~~~~a~----~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tl 129 (608)
..+.|++++|+ .+.+|||+.+..-+.+..||++ + .++
T Consensus 4 ~~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~~~~kT~v-~--------------------------------------~~~ 44 (126)
T cd08400 4 RSLQLNVLEAHKLPVKHVPHPYCVISLNEVKVARTKV-R--------------------------------------EGP 44 (126)
T ss_pred eEEEEEEEEeeCCCCCCCCCeeEEEEECCEeEEEeec-C--------------------------------------CCC
Confidence 36889999998 4789999776543445678887 6 679
Q ss_pred CCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 130 KPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 130 nP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
||.|||.|.+.+.......+.+.++|+|..+++|+||.+.+++.++..
T Consensus 45 nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~ 92 (126)
T cd08400 45 NPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQN 92 (126)
T ss_pred CCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccC
Confidence 999999777764333224688999999999999999999999998644
No 92
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=98.74 E-value=1.4e-08 Score=93.63 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=68.7
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
.+-+.|+|+.|+ .+.+|||+.++.+++ ...||+|++
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k--------------------------------- 60 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR--------------------------------- 60 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc---------------------------------
Confidence 467999999999 278899999876543 256899999
Q ss_pred hhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecc
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLL 173 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~ 173 (608)
+|+||+|||.|.|.+... .+..+.|+|+|+|.++++|+||.+.+...
T Consensus 61 -----~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 61 -----DDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA 109 (136)
T ss_pred -----CCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC
Confidence 999999999888887443 56779999999999999999997777554
No 93
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.74 E-value=2e-08 Score=85.56 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=60.6
Q ss_pred HHHHHhccccc-CCCCcccHHHHHHHHHH-hcCcccH-HHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 218 FARRILSIVDY-NQDGQLSFKEFSDLISA-FGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 218 ~l~~~f~~~D~-d~dG~Is~eEf~~~l~~-lg~~~~~-eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
.+..+|+.||. +++|+|+..||..++.. ++..++. ++++++++.+|.|+||.|+|+||..++..+
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 37899999999 99999999999999999 8887887 899999999999999999999999998764
No 94
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.74 E-value=1.3e-08 Score=98.54 Aligned_cols=98 Identities=19% Similarity=0.322 Sum_probs=67.3
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh----cC-------ccc
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF----GN-------QVA 251 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l----g~-------~~~ 251 (608)
..+|+.+|.+++|.| +.+++.++........+ +.++.+|+++|.|++|.|+++|+..++..+ +. ..+
T Consensus 67 ~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~e-ekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~ 145 (193)
T KOG0044|consen 67 ELVFRTFDKNKDGTIDFLEFICALSLTSRGTLE-EKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETP 145 (193)
T ss_pred HHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHH-HHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccH
Confidence 567888888888888 66655544321111111 126677888888888888888888877662 21 123
Q ss_pred HHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 252 ANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 252 ~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
++.+..+|+.+|.|+||.||++||.......
T Consensus 146 ~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 146 EERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred HHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 4567888888888888888888888877553
No 95
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.74 E-value=1.4e-08 Score=91.92 Aligned_cols=101 Identities=22% Similarity=0.221 Sum_probs=76.5
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|+|++|+ .+..|||+.+...+.+..+|++++ ..+
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~-------------------------------------~~~ 44 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDR-------------------------------------DGG 44 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCccccccccc-------------------------------------CCC
Confidence 678888888 378899988754444889999985 058
Q ss_pred CCCccccccceeeccCC----CcceeeEEeeccccccCCcCcceeeecccccccCcch---hhhhhhccCCC
Q 007303 129 DKPIWNSEKKLLLETNG----PHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDA---DSEVFDLLDPS 193 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~----~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~---~~eiF~~~D~d 193 (608)
.||.|||.+.+.+.... ...+.+++||++.++++|+||.+.+++.+++...... ....+.+.+++
T Consensus 45 ~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~ 116 (125)
T cd04051 45 TNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS 116 (125)
T ss_pred CCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC
Confidence 99999998888775442 5779999999999999999999999999987554332 12345555443
No 96
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.74 E-value=2.1e-08 Score=91.18 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=69.8
Q ss_pred eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeeccC
Q 007303 65 MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLETN 144 (608)
Q Consensus 65 ~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~ 144 (608)
.+.+|||+++. .+...++|++++ ++.||+|||.|.+.+...
T Consensus 12 ~g~~Dpyv~v~-~~~~~~kT~v~~--------------------------------------~~~nP~Wne~f~f~~~~~ 52 (127)
T cd08373 12 KGKGDRIAKVT-FRGVKKKTRVLE--------------------------------------NELNPVWNETFEWPLAGS 52 (127)
T ss_pred CCCCCCEEEEE-ECCEeeecceeC--------------------------------------CCcCCcccceEEEEeCCC
Confidence 57899998775 456678999999 999999999888887542
Q ss_pred --CCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCCC
Q 007303 145 --GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 194 (608)
Q Consensus 145 --~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~ 194 (608)
....+.++|||++..+++|++|.+.+++.++...... ...+.+.++++
T Consensus 53 ~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~--~~~~~L~~~~~ 102 (127)
T cd08373 53 PDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLL--EVTEPLLDSNG 102 (127)
T ss_pred cCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCce--EEEEeCcCCCC
Confidence 4578999999999999999999999999997643222 22345555443
No 97
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.73 E-value=2.2e-08 Score=90.90 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=71.8
Q ss_pred cceeeEEEEEEeeee-------eccCCCceEEEecCc--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 50 EDFAGIALLTLISAE-------MKFKDKWLACVSLGE--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 50 ~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
..-.+-+.|+++.|+ .+.+|||+.++.++. +..||+|.+
T Consensus 12 ~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-------------------------------- 59 (124)
T cd08389 12 DPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-------------------------------- 59 (124)
T ss_pred CCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc--------------------------------
Confidence 344568999999999 267888887765553 578999988
Q ss_pred hhhcccCCCCCcccccccee-eccC--CCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 121 ISFFWCSTDKPIWNSEKKLL-LETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~-ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
. +||+|||.|.+. +... .+..+.++|+|+|.++++|++|++.+++.++
T Consensus 60 ------~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l 110 (124)
T cd08389 60 ------G-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQL 110 (124)
T ss_pred ------C-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEecccc
Confidence 7 999999988886 5322 5678999999999999999999999999996
No 98
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.73 E-value=2.9e-08 Score=96.06 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHH
Q 007303 199 VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAAL 278 (608)
Q Consensus 199 l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~ 278 (608)
+..+++... |......+...+|+.+|.|+||.|+++||..++........++.++.+|+.+|.|+||+||++|+..+
T Consensus 49 F~~i~~~~f---p~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~i 125 (193)
T KOG0044|consen 49 FREIYASFF---PDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKI 125 (193)
T ss_pred HHHHHHHHC---CCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHH
Confidence 666776653 23333445899999999999999999999999998877788899999999999999999999999998
Q ss_pred HHhhcccC-----c--ccCCchhHHHhHhhhcccCccc
Q 007303 279 LALQQEKE-----P--LMNCCPVCGETLEVADMVNTMI 309 (608)
Q Consensus 279 l~~~~e~~-----~--~~~~~~~~~~~l~~~D~~~di~ 309 (608)
++...... + ....+..+.++++++|.++|..
T Consensus 126 v~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~ 163 (193)
T KOG0044|consen 126 VQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGK 163 (193)
T ss_pred HHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCc
Confidence 87753222 1 2223345778899999888765
No 99
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.73 E-value=3.9e-08 Score=88.95 Aligned_cols=84 Identities=10% Similarity=0.136 Sum_probs=68.9
Q ss_pred eEEEEEEeeee----eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCC
Q 007303 54 GIALLTLISAE----MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTD 129 (608)
Q Consensus 54 ~~~~~~~~~a~----~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tl 129 (608)
|.+.|++++|+ .+..|||+.+ ++|++..+|++.+ .+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~~dPYV~I-k~g~~k~kT~v~~--------------------------------------~~- 41 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDKFNTYVTL-KVQNVKSTTIAVR--------------------------------------GS- 41 (127)
T ss_pred ceEEEEEEEeeCCCCCCCCCCeEEE-EECCEEeEeeECC--------------------------------------CC-
Confidence 57889999999 3555887554 7788999999999 74
Q ss_pred CCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccC
Q 007303 130 KPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKD 179 (608)
Q Consensus 130 nP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~e 179 (608)
||+|||.|.|.++.. ...+.+++||.|.+ .+|++|.+.+++.+++..+
T Consensus 42 nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~ 89 (127)
T cd08394 42 QPCWEQDFMFEINRL-DLGLVIELWNKGLI-WDTLVGTVWIPLSTIRQSN 89 (127)
T ss_pred CCceeeEEEEEEcCC-CCEEEEEEEeCCCc-CCCceEEEEEEhHHcccCC
Confidence 999999888887654 34499999999965 9999999999999976553
No 100
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=98.73 E-value=2.2e-08 Score=90.24 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=71.7
Q ss_pred eeEEEEEEeeee----e--ccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 53 AGIALLTLISAE----M--KFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 53 ~~~~~~~~~~a~----~--~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
.|.+.|+|+.|+ + +.+|||+.++.+++ ...||++++
T Consensus 11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~---------------------------------- 56 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVP---------------------------------- 56 (119)
T ss_pred CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCcccc----------------------------------
Confidence 478999999999 2 67899999876653 356999999
Q ss_pred hcccCCCCCccccccceeeccC-CCcceeeEEeeccccc-cCCcCcceeeeccccccc
Q 007303 123 FFWCSTDKPIWNSEKKLLLETN-GPHVARISVFETNRLS-KSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve~~-~~~~l~~~v~D~D~~s-~~D~iG~~~i~l~elLs~ 178 (608)
+++||+|||.|.+.+..+ ....+.++|||+|..+ ++|++|.+.+++.+++..
T Consensus 57 ----~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~ 110 (119)
T cd08685 57 ----DSANPLFHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQ 110 (119)
T ss_pred ----CCCCCccccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccC
Confidence 999999999888877433 3356889999999876 478999999999997643
No 101
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.71 E-value=2.8e-08 Score=91.25 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=68.8
Q ss_pred eeeEEEEEEeeee-------eccCCCceEEEec--Cc--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 52 FAGIALLTLISAE-------MKFKDKWLACVSL--GE--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 52 ~~~~~~~~~~~a~-------~~~~d~~~~~~~~--~~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
-.|.+.|+|++|+ .+.+|||+.+... +. ...+|++++
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-------------------------------- 59 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-------------------------------- 59 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc--------------------------------
Confidence 4589999999999 3789999887643 22 367999999
Q ss_pred hhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecc
Q 007303 121 ISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLL 173 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~ 173 (608)
+++||+|||.|.+.+..+ ....+.++|||+|.++++|+||.+.+++.
T Consensus 60 ------~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 60 ------NTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred ------CCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 999999999888776432 33568999999999999999999888765
No 102
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.70 E-value=3.2e-08 Score=91.21 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=65.9
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
|.+.|++++|+ .+.+|||+.+...+. ...+|++++
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~---------------------------------- 59 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR---------------------------------- 59 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc----------------------------------
Confidence 78999999999 378999998864332 457999999
Q ss_pred hcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeec
Q 007303 123 FFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDL 172 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l 172 (608)
+|+||+|||.|.+.+..+ .+..+.++|||+|..+++|+||.+.+..
T Consensus 60 ----~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 60 ----GTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred ----CCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC
Confidence 999999999888887433 3346899999999999999999766543
No 103
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.69 E-value=3.4e-08 Score=90.98 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=69.6
Q ss_pred eeeEEEEEEeeee-------eccCCCceEEEecC--c--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 52 FAGIALLTLISAE-------MKFKDKWLACVSLG--E--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 52 ~~~~~~~~~~~a~-------~~~~d~~~~~~~~~--~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
-.|.+.|+|++|+ .+.+|||+.+...+ . ...+|++++
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-------------------------------- 60 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-------------------------------- 60 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee--------------------------------
Confidence 3478999999999 27899999886542 2 457899999
Q ss_pred hhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 121 ISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+++||.|||.|.+.+..+ ....+.++|||+|.++++|+||.+.+++..
T Consensus 61 ------~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 61 ------RTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred ------CCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence 999999999887776433 235799999999999999999999999875
No 104
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.68 E-value=8.1e-08 Score=87.73 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=89.3
Q ss_pred ccccCcchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH-hcC
Q 007303 175 FLTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGN 248 (608)
Q Consensus 175 lLs~ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~-lg~ 248 (608)
.+.+.++.+ ++.|.++|.|+||.| ++..+.+++. .+++++ +..+++. ..|.|+|.-|+.++.. +..
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk-~~~d~e---lDaM~~E----a~gPINft~FLTmfGekL~g 96 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGK-IASDEE---LDAMMKE----APGPINFTVFLTMFGEKLNG 96 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCC-CCCHHH---HHHHHHh----CCCCeeHHHHHHHHHHHhcC
Confidence 356667777 899999999999999 8888888865 466655 7777764 4788888888888876 555
Q ss_pred cccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhh
Q 007303 249 QVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEV 301 (608)
Q Consensus 249 ~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~ 301 (608)
..+++.+..+|+.||.+++|.|.-+.|+++|...+++... ..+.+++..
T Consensus 97 tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~----eEV~~m~r~ 145 (171)
T KOG0031|consen 97 TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTD----EEVDEMYRE 145 (171)
T ss_pred CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCH----HHHHHHHHh
Confidence 6677788888888888888888888888888888877665 455566543
No 105
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.67 E-value=3.8e-08 Score=90.66 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=71.1
Q ss_pred ceeeEEEEEEeeee-------eccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHh
Q 007303 51 DFAGIALLTLISAE-------MKFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLF 119 (608)
Q Consensus 51 ~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (608)
.-.|.+.|++++|+ .+.+|||+.+...+ ....||++++
T Consensus 12 ~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~------------------------------- 60 (136)
T cd08405 12 PTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK------------------------------- 60 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-------------------------------
Confidence 34588999999999 36899998875432 1357999999
Q ss_pred hhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 120 VISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 120 ~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+++||.|||.|.+.+..+ .+..+.++|+|+|.++++|++|.+.+++.+.
T Consensus 61 -------~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 61 -------RTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred -------CCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 999999999887776422 3467999999999999999999999999873
No 106
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.67 E-value=2.8e-08 Score=88.36 Aligned_cols=93 Identities=15% Similarity=0.270 Sum_probs=70.3
Q ss_pred eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeeccC
Q 007303 65 MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLETN 144 (608)
Q Consensus 65 ~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~ 144 (608)
.|.+|||+.+.--+....+|++++ ++.||+|||.+.+.+...
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~--------------------------------------~t~nP~Wne~f~f~v~~~ 51 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKK--------------------------------------KTNNPSWNASTEFLVTDR 51 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeec--------------------------------------cCCCCccCCceEEEecCc
Confidence 588999988754444678999999 999999999888887655
Q ss_pred CCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCCCCchh
Q 007303 145 GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSSNKI 198 (608)
Q Consensus 145 ~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~dGkI 198 (608)
....+.+.|+|++.+ ++|++|.+.+++.+++...... ...|.+.+ ...|+|
T Consensus 52 ~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~-~~w~~L~~-~~~G~i 102 (111)
T cd04052 52 RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVG-QQWFPLSG-NGQGRI 102 (111)
T ss_pred CCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhcc-ceeEECCC-CCCCEE
Confidence 556799999999999 8999999999999975432221 34455433 345554
No 107
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.66 E-value=6.1e-08 Score=91.14 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=70.4
Q ss_pred ccceeeEEEEEEeeee-------eccCCCceEEEecC----------------------------cceEEeeeehhhhhh
Q 007303 49 EEDFAGIALLTLISAE-------MKFKDKWLACVSLG----------------------------EQTCRTAISDKLRTF 93 (608)
Q Consensus 49 ~~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~----------------------------~~~~~t~v~~~l~~~ 93 (608)
++.-.+.+.|+|++|+ .+++|||+.+...+ ...++|++++
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~----- 97 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP----- 97 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-----
Confidence 3445689999999998 48999998765321 1358999999
Q ss_pred HhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecc
Q 007303 94 ARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLL 173 (608)
Q Consensus 94 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~ 173 (608)
+|+||.|||.|.+.+.......+.++|||+| +|+||.+.+++.
T Consensus 98 ---------------------------------~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~ 140 (153)
T cd08676 98 ---------------------------------QTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLK 140 (153)
T ss_pred ---------------------------------CCCCCccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHH
Confidence 9999999998888875544578999999998 899999999999
Q ss_pred ccc
Q 007303 174 EFL 176 (608)
Q Consensus 174 elL 176 (608)
++.
T Consensus 141 ~l~ 143 (153)
T cd08676 141 DLP 143 (153)
T ss_pred HhC
Confidence 965
No 108
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.65 E-value=7.3e-08 Score=89.04 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=66.6
Q ss_pred EEEEEeeee------eccCCCceEEEecC------------cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHH
Q 007303 56 ALLTLISAE------MKFKDKWLACVSLG------------EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSF 117 (608)
Q Consensus 56 ~~~~~~~a~------~~~~d~~~~~~~~~------------~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 117 (608)
..|+++.|+ +++.|||+.+...+ .+.++|++++
T Consensus 3 ~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~----------------------------- 53 (137)
T cd08691 3 FSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE----------------------------- 53 (137)
T ss_pred EEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-----------------------------
Confidence 457777777 48999999886544 2479999999
Q ss_pred HhhhhhcccCCCCCcc-ccccceeeccCCCcceeeEEeecccccc---CCcCcceeeeccccccc
Q 007303 118 LFVISFFWCSTDKPIW-NSEKKLLLETNGPHVARISVFETNRLSK---SNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 118 ~~~~~~~~~~tlnP~w-ne~~~~~ve~~~~~~l~~~v~D~D~~s~---~D~iG~~~i~l~elLs~ 178 (608)
+|+||+| ||.|.+.+.. +..+.++|||++..++ +|++|.+.+++.+++..
T Consensus 54 ---------~tlnP~W~nE~f~f~v~~--~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 54 ---------NTINPVWHREQFVFVGLP--TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred ---------CCCCCceEceEEEEEcCC--CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 9999999 9977776643 3579999999876554 69999999999998654
No 109
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=98.65 E-value=7.2e-08 Score=90.71 Aligned_cols=87 Identities=24% Similarity=0.266 Sum_probs=67.1
Q ss_pred eccCCCceEEEe----cCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCcccccccee
Q 007303 65 MKFKDKWLACVS----LGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLL 140 (608)
Q Consensus 65 ~~~~d~~~~~~~----~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ 140 (608)
-+.+|||+.+.. .+.+..||++++ .|+||+|||+|.+.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k--------------------------------------~TlnPvfNE~f~f~ 63 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIK--------------------------------------DTNSPEYNESFKLN 63 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCccc--------------------------------------CCCCCcccceEEEE
Confidence 367999999863 345789999999 99999999988887
Q ss_pred eccC--------CCcceeeEEeecccc-ccCCcCcceeeecccccccCcchhhhhhhccC
Q 007303 141 LETN--------GPHVARISVFETNRL-SKSNLEGYCEVDLLEFLTKDSDADSEVFDLLD 191 (608)
Q Consensus 141 ve~~--------~~~~l~~~v~D~D~~-s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D 191 (608)
+... ....+.++|||.+.+ .++|+||.+.+++..+....+.. ..++++|
T Consensus 64 I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~--~~~~L~~ 121 (155)
T cd08690 64 INRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIH--ESVDLMD 121 (155)
T ss_pred eccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcce--EEEEhhh
Confidence 7432 245699999999997 57999999999999965443332 2455554
No 110
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.65 E-value=7.6e-08 Score=87.66 Aligned_cols=80 Identities=14% Similarity=0.310 Sum_probs=65.3
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
++|+|++|+ .+.+|||+++. ++....+|++++ +|
T Consensus 3 L~V~vi~a~~L~~~d~~g~~DPyv~v~-~~~~~~kT~~v~--------------------------------------~t 43 (127)
T cd04027 3 ISITVVCAQGLIAKDKTGTSDPYVTVQ-VGKTKKRTKTIP--------------------------------------QN 43 (127)
T ss_pred EEEEEEECcCCcCCCCCCCcCcEEEEE-ECCEeeecceec--------------------------------------CC
Confidence 577888887 47889997775 566789999999 99
Q ss_pred CCCccccccceeeccCCCcceeeEEeecccc-----------ccCCcCcceeeecccc
Q 007303 129 DKPIWNSEKKLLLETNGPHVARISVFETNRL-----------SKSNLEGYCEVDLLEF 175 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~~~l~~~v~D~D~~-----------s~~D~iG~~~i~l~el 175 (608)
+||.|||.|.+.+... ...+.++|||+|.. +.+|++|.+.+++.++
T Consensus 44 ~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~ 100 (127)
T cd04027 44 LNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL 100 (127)
T ss_pred CCCccceEEEEEecCC-CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHc
Confidence 9999999777766433 35799999999963 5799999999999884
No 111
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=98.65 E-value=5.4e-08 Score=89.99 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=70.2
Q ss_pred ceeeEEEEEEeeee----e-----ccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHH
Q 007303 51 DFAGIALLTLISAE----M-----KFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSF 117 (608)
Q Consensus 51 ~~~~~~~~~~~~a~----~-----~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~ 117 (608)
..+|-+.|+|+.|+ + +.+|||+.++.++. ...||++.+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k----------------------------- 62 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK----------------------------- 62 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-----------------------------
Confidence 34577999999999 2 33799999875553 246899999
Q ss_pred HhhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 118 LFVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 118 ~~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+++||+|||.|.|.+..+ .+..+.++|+|+|.++++|+||.+.+.+..
T Consensus 63 ---------~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 63 ---------HKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred ---------CCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 999999999888877443 457799999999999999999998888864
No 112
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.64 E-value=6.2e-08 Score=89.57 Aligned_cols=83 Identities=13% Similarity=0.168 Sum_probs=67.8
Q ss_pred EEEEeeee------eccCCCceEEEecC---cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccC
Q 007303 57 LLTLISAE------MKFKDKWLACVSLG---EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCS 127 (608)
Q Consensus 57 ~~~~~~a~------~~~~d~~~~~~~~~---~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 127 (608)
.|+|+.|+ .+..|||+.+...+ ....||++++ +
T Consensus 2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~--------------------------------------~ 43 (137)
T cd08675 2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKK--------------------------------------K 43 (137)
T ss_pred EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceee--------------------------------------C
Confidence 45666666 37899998876543 5779999999 9
Q ss_pred CCCCccccccceeeccC---------------CCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 128 TDKPIWNSEKKLLLETN---------------GPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 128 tlnP~wne~~~~~ve~~---------------~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+.||.|++.+.+.+... ....+.++|||++..+++++||.+.+++.++..
T Consensus 44 t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~ 108 (137)
T cd08675 44 TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQ 108 (137)
T ss_pred CCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccC
Confidence 99999999777776432 456799999999999999999999999999653
No 113
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.63 E-value=4.1e-08 Score=121.44 Aligned_cols=107 Identities=13% Similarity=0.200 Sum_probs=86.9
Q ss_pred ccceeeEEEEEEeeee-----eccCCCceEEEecCcc-eEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 49 EEDFAGIALLTLISAE-----MKFKDKWLACVSLGEQ-TCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 49 ~~~~~~~~~~~~~~a~-----~~~~d~~~~~~~~~~~-~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
.+.+.|.+.|+++.|+ ++.+|||+++ .+|++ ..||+|++
T Consensus 1975 ~~~~~G~L~V~V~~a~nl~~~~~~sdPyv~l-~~g~~~~~kTkvvk---------------------------------- 2019 (2102)
T PLN03200 1975 LQCLPGSLTVTIKRGNNLKQSMGNTNAFCKL-TLGNGPPRQTKVVS---------------------------------- 2019 (2102)
T ss_pred HhhCCcceEEEEeeccccccccCCCCCeEEE-EECCCCcccccccC----------------------------------
Confidence 5667899999999998 6889999766 67755 78999999
Q ss_pred hcccCCCCCccccccceeeccC-CCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCC-CCCch
Q 007303 123 FFWCSTDKPIWNSEKKLLLETN-GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDP-SSSNK 197 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve~~-~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~-d~dGk 197 (608)
+|.||+|||+|++.++.. ....+.++|||+|.++ +|.+|++++++..++..... .+.|.+.+. +++|.
T Consensus 2020 ----~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~-kd~~G~~~i~l~~vv~~~~~--~~~~~L~~~~~k~G~ 2089 (2102)
T PLN03200 2020 ----HSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG-KSSLGKVTIQIDRVVMEGTY--SGEYSLNPESNKDGS 2089 (2102)
T ss_pred ----CCCCCCcccceeeeecCCCCCCceEEEEEecCccC-CCCCceEEEEHHHHhcCcee--eeeeecCcccccCCC
Confidence 999999999999999776 3467999999999995 55999999999998754433 446777653 45665
No 114
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.63 E-value=9.7e-08 Score=86.08 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=73.3
Q ss_pred ccceeeEEEEEEeeee--------eccCCCceEEEec--CcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHH
Q 007303 49 EEDFAGIALLTLISAE--------MKFKDKWLACVSL--GEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFL 118 (608)
Q Consensus 49 ~~~~~~~~~~~~~~a~--------~~~~d~~~~~~~~--~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 118 (608)
-+.-.+.+.|+|++|+ .+..|||+.+... +....+|++++
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~------------------------------ 58 (123)
T cd08390 9 YDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKR------------------------------ 58 (123)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEc------------------------------
Confidence 3344578899999998 2467999887643 34568999999
Q ss_pred hhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 119 FVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 119 ~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
+++||+|||.|.+.+... ....+.+.|||++..+++++||.+.+++.++..
T Consensus 59 --------~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~ 111 (123)
T cd08390 59 --------KTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111 (123)
T ss_pred --------CCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceec
Confidence 999999999887776433 346799999999999999999999999999644
No 115
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.62 E-value=8.7e-08 Score=87.57 Aligned_cols=98 Identities=16% Similarity=0.262 Sum_probs=77.8
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
|.+.|++++|+ .+..|||+.+...+ ....||++++
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~---------------------------------- 58 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK---------------------------------- 58 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec----------------------------------
Confidence 88999999998 36789998876543 3679999999
Q ss_pred hcccCCCCCccccccceeeccC-CCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCC
Q 007303 123 FFWCSTDKPIWNSEKKLLLETN-GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDP 192 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve~~-~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~ 192 (608)
++.||.||+.+.+.+... ....+.+++||++..++++++|.+.+++.+++.. . ...+|.+.+.
T Consensus 59 ----~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~--~~~w~~L~~~ 122 (131)
T cd04026 59 ----KTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-P--VDGWYKLLNQ 122 (131)
T ss_pred ----CCCCCCccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-c--cCceEECcCc
Confidence 999999999887776432 4567999999999999999999999999997643 1 1345555554
No 116
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.62 E-value=1.5e-07 Score=84.57 Aligned_cols=114 Identities=25% Similarity=0.317 Sum_probs=95.3
Q ss_pred Ccchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccC--CCCcccHHHHHHHHHHhcCc--
Q 007303 179 DSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYN--QDGQLSFKEFSDLISAFGNQ-- 249 (608)
Q Consensus 179 ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d--~dG~Is~eEf~~~l~~lg~~-- 249 (608)
++..+ +++|.++|..+||+| .++++++++. +|++.+ +.+....++.+ +--.|+|++|.-++..+++.
T Consensus 8 d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~-nPT~ae---V~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQ-NPTNAE---VLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred chHHHHHHHHHHHhccCcccccHHHHHHHHHHhcC-CCcHHH---HHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 34445 889999999999999 8889999965 888888 89999988887 45789999999999887543
Q ss_pred -ccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHh
Q 007303 250 -VAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLE 300 (608)
Q Consensus 250 -~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~ 300 (608)
.+-++.-+-++.||++++|.|...||+++|..++++..+ ..+.+.+.
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~e----eEVe~Lla 131 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTE----EEVEELLA 131 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccH----HHHHHHHc
Confidence 455777888999999999999999999999999998876 34555554
No 117
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.61 E-value=7.4e-08 Score=89.15 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=72.8
Q ss_pred ccccceeeEEEEEEeeee-------eccCCCceEEEecCc-----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHH
Q 007303 47 LNEEDFAGIALLTLISAE-------MKFKDKWLACVSLGE-----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTL 114 (608)
Q Consensus 47 ~~~~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~~-----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~ 114 (608)
++=....|-+.|+|+.|+ .+..|||+.+..++. ...||++.+
T Consensus 8 L~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-------------------------- 61 (138)
T cd08408 8 LEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-------------------------- 61 (138)
T ss_pred eEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec--------------------------
Confidence 333445588999999999 268899999976542 246999999
Q ss_pred HHHHhhhhhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 115 FSFLFVISFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 115 ~~~~~~~~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+++||+|||.|.|.+..+ .+..+.|+|+|+|.++++|+||.+.+.+..
T Consensus 62 ------------~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 62 ------------GQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred ------------CCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 999999999888887543 557899999999999999999987776654
No 118
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.60 E-value=1.2e-07 Score=80.70 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=59.3
Q ss_pred HHHHhcccc-cCCCC-cccHHHHHHHHHH-----hcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVD-YNQDG-QLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D-~d~dG-~Is~eEf~~~l~~-----lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
++++|+.+| .|++| .|+.+||..+|.. ++...++++++++++.+|.|+||.|+++||..++...
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 889999998 79999 6999999999998 7888888999999999999999999999999988653
No 119
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.59 E-value=1.4e-07 Score=85.21 Aligned_cols=92 Identities=16% Similarity=0.219 Sum_probs=72.8
Q ss_pred cccceeeEEEEEEeeee-------eccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHH
Q 007303 48 NEEDFAGIALLTLISAE-------MKFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFS 116 (608)
Q Consensus 48 ~~~~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 116 (608)
.-..-.+-+.|+|++|+ .+..|||+.+...+ ....||++++
T Consensus 9 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~---------------------------- 60 (123)
T cd04035 9 LYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH---------------------------- 60 (123)
T ss_pred EEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec----------------------------
Confidence 33444578999999999 36889999987553 2478999999
Q ss_pred HHhhhhhcccCCCCCcccccccee-ec-cC-CCcceeeEEeeccccccCCcCcceeeeccccccc
Q 007303 117 FLFVISFFWCSTDKPIWNSEKKLL-LE-TN-GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTK 178 (608)
Q Consensus 117 ~~~~~~~~~~~tlnP~wne~~~~~-ve-~~-~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ 178 (608)
+++||.||+.+.+. +. .+ ....+.+++||++.. .+++||.+.+++.++...
T Consensus 61 ----------~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 61 ----------KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred ----------CCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 99999999977663 22 22 346799999999998 899999999999996543
No 120
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.54 E-value=2.5e-07 Score=89.50 Aligned_cols=131 Identities=13% Similarity=0.198 Sum_probs=96.5
Q ss_pred cCCcCcceeeecccc---cccCcc-----hh-hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHHHHHHhcccccCC
Q 007303 161 KSNLEGYCEVDLLEF---LTKDSD-----AD-SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQ 230 (608)
Q Consensus 161 ~~D~iG~~~i~l~el---Ls~ee~-----~~-~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~ 230 (608)
.+|.-..+.|.-+|+ |+.... +. .-+...+|.+.+|+| +.++...... -.. |+.+|+.+|.|+
T Consensus 65 ~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~----i~~---Wr~vF~~~D~D~ 137 (221)
T KOG0037|consen 65 SVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY----INQ---WRNVFRTYDRDR 137 (221)
T ss_pred hhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH----HHH---HHHHHHhcccCC
Confidence 444444556777775 211111 11 557788999999999 5554332211 122 999999999999
Q ss_pred CCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCcc
Q 007303 231 DGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTM 308 (608)
Q Consensus 231 dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di 308 (608)
+|.|+..||..+|..+|-.++++-.+.+++++|.-++|.|.+++|++++..+ +..-+.+.+.|...+.
T Consensus 138 SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L----------~~lt~~Fr~~D~~q~G 205 (221)
T KOG0037|consen 138 SGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL----------QRLTEAFRRRDTAQQG 205 (221)
T ss_pred CCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH----------HHHHHHHHHhccccce
Confidence 9999999999999999999999999999999998889999999999988654 3455666667765554
No 121
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.52 E-value=3.1e-07 Score=84.55 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=62.3
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.|+|++|+ .+..|||+.+. ++.+..+|++++ +|
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~-~~~~~~kT~v~~--------------------------------------~t 43 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVS-FLNQSQETEVIK--------------------------------------ET 43 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEE-ECCeeeEeeeEc--------------------------------------CC
Confidence 578888888 37899998774 567889999999 99
Q ss_pred CCCccccccceee-c--cC------CCcceeeEEeeccccccCCcCcceeeec
Q 007303 129 DKPIWNSEKKLLL-E--TN------GPHVARISVFETNRLSKSNLEGYCEVDL 172 (608)
Q Consensus 129 lnP~wne~~~~~v-e--~~------~~~~l~~~v~D~D~~s~~D~iG~~~i~l 172 (608)
+||.|||.+.+.+ . .+ ....+.++|||+|..+++|+||.+.+..
T Consensus 44 ~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~ 96 (135)
T cd04017 44 LSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKP 96 (135)
T ss_pred CCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeee
Confidence 9999999776653 1 11 1246899999999999999999988643
No 122
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.51 E-value=2.2e-07 Score=84.81 Aligned_cols=99 Identities=12% Similarity=0.174 Sum_probs=77.2
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
.|.+.|++++|+ .+..|||+.+...+. ...+|++++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~--------------------------------- 59 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK--------------------------------- 59 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee---------------------------------
Confidence 378999999998 367899998865543 367999999
Q ss_pred hhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCC
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPS 193 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d 193 (608)
++.||.||++|.+.+... ....+.++|||++..++++++|.+.+++.+ ..... ..++++++..
T Consensus 60 -----~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~--~~W~~l~~~~ 124 (134)
T cd00276 60 -----GTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEEL--EHWNEMLASP 124 (134)
T ss_pred -----cCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHH--HHHHHHHhCC
Confidence 999999999877776443 256799999999999999999999999988 22222 4566666553
No 123
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.49 E-value=3.1e-07 Score=84.89 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=69.0
Q ss_pred eeeEEEEEEeeee------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 52 FAGIALLTLISAE------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 52 ~~~~~~~~~~~a~------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
-.+-+.|+|+.|+ .+..|||+.+...+. ...||++++
T Consensus 13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~--------------------------------- 59 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVD--------------------------------- 59 (137)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEe---------------------------------
Confidence 3467999999998 256899999875543 356999999
Q ss_pred hhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+++||.|||.|.|.+..+ ....+.++|+|.+..++++++|.+.+....
T Consensus 60 -----~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 60 -----GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred -----CCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcc
Confidence 999999999888887432 446899999999999999999988877544
No 124
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.48 E-value=3.1e-07 Score=84.23 Aligned_cols=85 Identities=8% Similarity=0.095 Sum_probs=67.1
Q ss_pred eeeEEEEEEeeee----e---ccCCCceEEEecC--c--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 52 FAGIALLTLISAE----M---KFKDKWLACVSLG--E--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 52 ~~~~~~~~~~~a~----~---~~~d~~~~~~~~~--~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
.+|.++|+|+.|+ | ...|||+++...+ . ...+|++.+
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-------------------------------- 59 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-------------------------------- 59 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE--------------------------------
Confidence 4588999999999 2 4457798886443 2 358899999
Q ss_pred hhhcccCCC-CCccccccceeecc-CCCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 121 ISFFWCSTD-KPIWNSEKKLLLET-NGPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 121 ~~~~~~~tl-nP~wne~~~~~ve~-~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+|+ ||+|||.|.|.+.. +.+..+.++++|+|..+++|+||.+.+...+
T Consensus 60 ------~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 60 ------SSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred ------CCCCCceecceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 886 69999988887743 3446688999999999999999988888766
No 125
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.47 E-value=3.9e-07 Score=78.45 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=55.6
Q ss_pred HHHHhcccc-cCCCC-cccHHHHHHHHHH-h----cCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVD-YNQDG-QLSFKEFSDLISA-F----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D-~d~dG-~Is~eEf~~~l~~-l----g~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+.++|+.|| .|++| +|+.+||..++.. + ....++.+++++++.+|.|+||.|+++||..++..+
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 678899999 78998 5999999999976 3 334467899999999999999999999999998764
No 126
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.45 E-value=4.4e-07 Score=78.21 Aligned_cols=64 Identities=25% Similarity=0.285 Sum_probs=57.5
Q ss_pred HHHHhccccc-CC-CCcccHHHHHHHHHH-----hcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDY-NQ-DGQLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~-d~-dG~Is~eEf~~~l~~-----lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+.++|+.+|. |+ +|.|+.+|+..++.. ++...++++++.+|+.+|.|++|.|+++||..++...
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 8899999997 97 699999999999986 4556788999999999999999999999999988654
No 127
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.43 E-value=8e-07 Score=76.88 Aligned_cols=67 Identities=24% Similarity=0.351 Sum_probs=59.7
Q ss_pred hhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 214 TEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 214 ~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
++...++++|+.+|.|++|.|+.+|+..++...+ .+.++++++|..+|.+++|.|+++||..++...
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3444589999999999999999999999998864 678899999999999999999999999988654
No 128
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.43 E-value=6e-07 Score=76.45 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=58.1
Q ss_pred HHHHhccccc-CC-CCcccHHHHHHHHHH---hcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDY-NQ-DGQLSFKEFSDLISA---FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~-d~-dG~Is~eEf~~~l~~---lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+-.+|..||. |+ +|+|+.+||..++.. +|...+++++.++|+.+|.|++|.|+|+||..++..+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 6789999998 77 899999999999963 6888999999999999999999999999999988664
No 129
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.43 E-value=5.4e-07 Score=69.12 Aligned_cols=52 Identities=29% Similarity=0.630 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHHhcCc-ccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 230 QDGQLSFKEFSDLISAFGNQ-VAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 230 ~dG~Is~eEf~~~l~~lg~~-~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
++|.|+.+||..++..+|.. +++++++.+|..+|.|++|.|+++||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999778888 99999999999999999999999999999864
No 130
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.42 E-value=7.4e-07 Score=86.23 Aligned_cols=129 Identities=22% Similarity=0.295 Sum_probs=96.1
Q ss_pred cccCcchh-hhhhhccCCC-CCchh-hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCc-ccHHHHHHHHHHhcCccc
Q 007303 176 LTKDSDAD-SEVFDLLDPS-SSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQ-LSFKEFSDLISAFGNQVA 251 (608)
Q Consensus 176 Ls~ee~~~-~eiF~~~D~d-~dGkI-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~-Is~eEf~~~l~~lg~~~~ 251 (608)
++..+... ...|..++.+ ++|.+ ..++.... ......+..++++.+|.+++|. |++++|...+..+....+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-----~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-----ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-----HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 33344444 7789999998 88888 44443322 2223344688999999999988 999999999998766665
Q ss_pred HH-HHHHHHHHhcCCCCcccCHHHHHHHHHhhcc-cCc--ccCCchhHHHhHhhhcccCccc
Q 007303 252 AN-KKEELFKAADKNGDGVVSVDELAALLALQQE-KEP--LMNCCPVCGETLEVADMVNTMI 309 (608)
Q Consensus 252 ~e-el~~~F~~~D~d~dG~Is~eEf~~~l~~~~e-~~~--~~~~~~~~~~~l~~~D~~~di~ 309 (608)
.+ +++-+|+.||.+++|+|+.+|+.+++...-. ... +......+.+++.+.|.++|..
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 55 9999999999999999999999999988643 222 2222245777889999888864
No 131
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.42 E-value=7e-07 Score=71.18 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=54.8
Q ss_pred HHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 220 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 220 ~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
+++|+.+|.|++|.|+.+|+..++...+ .+.++++.+|+.+|.+++|.|+++||..++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 5689999999999999999999998876 47889999999999999999999999998854
No 132
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.41 E-value=8.2e-07 Score=76.19 Aligned_cols=64 Identities=30% Similarity=0.450 Sum_probs=56.9
Q ss_pred HHHHhcccc-cCCCC-cccHHHHHHHHHH-hcC----cccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVD-YNQDG-QLSFKEFSDLISA-FGN----QVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D-~d~dG-~Is~eEf~~~l~~-lg~----~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
++++|+.+| .|++| .|+.+|+..++.. ++. ..++++++++|+.+|.|++|.|+++||..++..+
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 899999997 99999 5999999999975 543 3578899999999999999999999999988664
No 133
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.41 E-value=1.4e-06 Score=91.29 Aligned_cols=94 Identities=21% Similarity=0.388 Sum_probs=71.9
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 262 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~ 262 (608)
+.+|..+|.+.+|.+ +.++.+.+. ..+.+ +.++|+..|.+.||.|+..|+...+..+|.+++++++.++|+..
T Consensus 54 ~~l~~~~d~~~dg~vDy~eF~~Y~~---~~E~~---l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~ 127 (463)
T KOG0036|consen 54 KMLFSAMDANRDGRVDYSEFKRYLD---NKELE---LYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHM 127 (463)
T ss_pred HHHHHhcccCcCCcccHHHHHHHHH---HhHHH---HHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHh
Confidence 567888888888887 666666552 11222 67788888888888888888888888888888888888888888
Q ss_pred cCCCCcccCHHHHHHHHHhhc
Q 007303 263 DKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 263 D~d~dG~Is~eEf~~~l~~~~ 283 (608)
|+|+++.|+++|+.+.+.-++
T Consensus 128 d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 128 DKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred ccCCCeeeccHHHHhhhhcCC
Confidence 888888888888888775544
No 134
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=4.6e-07 Score=92.45 Aligned_cols=128 Identities=27% Similarity=0.354 Sum_probs=94.8
Q ss_pred cccCcchh--hhhhhccCCCCCchh-hHHHHhhcCC--CCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhc---
Q 007303 176 LTKDSDAD--SEVFDLLDPSSSNKI-VGKISLSCSV--EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG--- 247 (608)
Q Consensus 176 Ls~ee~~~--~eiF~~~D~d~dGkI-l~ell~~l~~--~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg--- 247 (608)
++.++... ..++..+|.+++|.| ..++...+.. +.....+ ..+.|..+|.|.||.|+|+|+...+....
T Consensus 70 l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~---~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~ 146 (325)
T KOG4223|consen 70 LTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEE---AARRWDEYDKNKDGFITWEEYLPQTYGRVDLP 146 (325)
T ss_pred hCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHH---HHHHHHHhccCccceeeHHHhhhhhhhcccCc
Confidence 44444333 678999999999999 3333333211 1222222 67788899999999999999999887421
Q ss_pred -----CcccH--H----HHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCccc
Q 007303 248 -----NQVAA--N----KKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI 309 (608)
Q Consensus 248 -----~~~~~--e----el~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di~ 309 (608)
..... . .-++.|+.+|.|+||.+|.+||..++ +|+..+.|... +|.++|.+.|.++|..
T Consensus 147 ~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL--HPEe~p~M~~i-Vi~Etl~d~Dkn~DG~ 216 (325)
T KOG4223|consen 147 DEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL--HPEEHPHMKDI-VIAETLEDIDKNGDGK 216 (325)
T ss_pred cccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc--ChhhcchHHHH-HHHHHHhhcccCCCCc
Confidence 00000 0 23678999999999999999999999 99999999986 8999999999999875
No 135
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.37 E-value=1.1e-06 Score=67.71 Aligned_cols=61 Identities=25% Similarity=0.561 Sum_probs=57.4
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
++.+|+.+|.+++|.|+++||..++..++...+.+.+..+|+.+|.+++|.|+++||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999888899999999999999999999999998865
No 136
>PLN03008 Phospholipase D delta
Probab=98.36 E-value=4.8e-07 Score=103.33 Aligned_cols=85 Identities=12% Similarity=0.280 Sum_probs=67.7
Q ss_pred eccCCCceEEEecCc-ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeecc
Q 007303 65 MKFKDKWLACVSLGE-QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLET 143 (608)
Q Consensus 65 ~~~~d~~~~~~~~~~-~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~ 143 (608)
.+.+|||+.+.. ++ +..||+|++ +++||+|||+|.+.+..
T Consensus 74 ~~tSDPYV~I~L-g~~rv~RTrVi~--------------------------------------n~~NPvWNE~F~f~vah 114 (868)
T PLN03008 74 VITSDPYVTVVV-PQATLARTRVLK--------------------------------------NSQEPLWDEKFNISIAH 114 (868)
T ss_pred cCCCCceEEEEE-CCcceeeEEeCC--------------------------------------CCCCCCcceeEEEEecC
Confidence 578999988754 55 467999999 99999999999999876
Q ss_pred CCCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCC
Q 007303 144 NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDP 192 (608)
Q Consensus 144 ~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~ 192 (608)
. ...+.|+|+|+|.++. |+||.+.+++++++..+... ..+.+++.
T Consensus 115 ~-~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L~~Ge~vd--~Wl~Ll~~ 159 (868)
T PLN03008 115 P-FAYLEFQVKDDDVFGA-QIIGTAKIPVRDIASGERIS--GWFPVLGA 159 (868)
T ss_pred C-CceEEEEEEcCCccCC-ceeEEEEEEHHHcCCCCceE--EEEEcccc
Confidence 4 3589999999999974 99999999999976654442 34444443
No 137
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.34 E-value=1.4e-06 Score=73.91 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=57.2
Q ss_pred HHHHHhccccc--CCCCcccHHHHHHHHHH-hcCcc----cHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 218 FARRILSIVDY--NQDGQLSFKEFSDLISA-FGNQV----AANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 218 ~l~~~f~~~D~--d~dG~Is~eEf~~~l~~-lg~~~----~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
.++.+|..+|. |++|.|+.+||..++.. ++... +.++++.++..+|.+++|.|+++||..++...
T Consensus 9 ~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 9 TIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 38899999999 89999999999999976 45433 47899999999999999999999999988654
No 138
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.32 E-value=2.7e-06 Score=82.53 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=85.5
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcC---CCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCS---VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 259 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~---~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F 259 (608)
...|...|.+..|.| -+++..++. ......+- ++.+..+||.+.+|+|.++||..+...+. .++.+|
T Consensus 60 ~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~T---crlmI~mfd~~~~G~i~f~EF~~Lw~~i~------~Wr~vF 130 (221)
T KOG0037|consen 60 AGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIET---CRLMISMFDRDNSGTIGFKEFKALWKYIN------QWRNVF 130 (221)
T ss_pred HHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHH---HHHHHHHhcCCCCCccCHHHHHHHHHHHH------HHHHHH
Confidence 568999999999999 344444432 22333343 89999999999999999999999998754 799999
Q ss_pred HHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcc
Q 007303 260 KAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADM 304 (608)
Q Consensus 260 ~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~ 304 (608)
+.+|+|++|.|+..||.+.|..++-..+. .....++++-|.
T Consensus 131 ~~~D~D~SG~I~~sEL~~Al~~~Gy~Lsp----q~~~~lv~kyd~ 171 (221)
T KOG0037|consen 131 RTYDRDRSGTIDSSELRQALTQLGYRLSP----QFYNLLVRKYDR 171 (221)
T ss_pred HhcccCCCCcccHHHHHHHHHHcCcCCCH----HHHHHHHHHhcc
Confidence 99999999999999999999999887765 333344565553
No 139
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.32 E-value=7.5e-07 Score=103.39 Aligned_cols=86 Identities=23% Similarity=0.320 Sum_probs=77.6
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcc
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFW 125 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 125 (608)
+|-+.+.+++|+ -+++|||+.+...++..++|+++|
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~K------------------------------------- 1081 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVK------------------------------------- 1081 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchh-------------------------------------
Confidence 488999999988 489999999987788899999999
Q ss_pred cCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 126 CSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 126 ~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
.|+||+|||++...+.......+.+.|+|||.-.++|++|.+.+++..+.
T Consensus 1082 -ktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~ 1131 (1227)
T COG5038 1082 -KTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLE 1131 (1227)
T ss_pred -ccCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcC
Confidence 99999999988888876666789999999999999999999999999854
No 140
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=8.5e-07 Score=96.73 Aligned_cols=84 Identities=20% Similarity=0.327 Sum_probs=73.2
Q ss_pred eEEEEEEeeee----e---ccCCCceEEEecCcc--eEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhc
Q 007303 54 GIALLTLISAE----M---KFKDKWLACVSLGEQ--TCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFF 124 (608)
Q Consensus 54 ~~~~~~~~~a~----~---~~~d~~~~~~~~~~~--~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 124 (608)
.-+.|+++.|. + +.+|||+.++.++++ .++|+|.+
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r------------------------------------ 210 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR------------------------------------ 210 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee------------------------------------
Confidence 47888899888 2 579999999988875 68999999
Q ss_pred ccCCCCCccccccceee--ccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 125 WCSTDKPIWNSEKKLLL--ETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 125 ~~~tlnP~wne~~~~~v--e~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+|+||+|||.|.+.+ ++...+++.++|||.|+|++||+||++.+++.++
T Consensus 211 --~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~ 261 (421)
T KOG1028|consen 211 --KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEV 261 (421)
T ss_pred --cCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccc
Confidence 999999999888886 3346788999999999999999999999998875
No 141
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.29 E-value=1.9e-06 Score=77.99 Aligned_cols=82 Identities=15% Similarity=0.282 Sum_probs=65.5
Q ss_pred EEEEEEeeee---------eccCCCceEEEecC-----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 55 IALLTLISAE---------MKFKDKWLACVSLG-----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 55 ~~~~~~~~a~---------~~~~d~~~~~~~~~-----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
.+.|+|++|+ .+..|||+.+...+ ...+||++++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~-------------------------------- 50 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVK-------------------------------- 50 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeec--------------------------------
Confidence 3678888887 24679998886543 3569999988
Q ss_pred hhhcccCCC-CCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 121 ISFFWCSTD-KPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 121 ~~~~~~~tl-nP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
.+. ||+|||++.+.+.......+.++|||++.. +++++|.+.+++.++
T Consensus 51 ------~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l 99 (128)
T cd00275 51 ------NNGFNPVWNETFEFDVTVPELAFLRFVVYDEDSG-DDDFLGQACLPLDSL 99 (128)
T ss_pred ------CCCcCCccCCcEEEEEeCCCeEEEEEEEEeCCCC-CCcEeEEEEEEhHHh
Confidence 665 999999887777544445689999999998 999999999999995
No 142
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.25 E-value=1.5e-06 Score=90.93 Aligned_cols=147 Identities=19% Similarity=0.220 Sum_probs=110.1
Q ss_pred hhhhhccCCCCCchh-hHH---HHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKI-VGK---ISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELF 259 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~e---ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F 259 (608)
..+|+.+|.+++|.+ +.+ .+.++....+.... .+.+|+..|.|.||.++|+||...+.. .+.++.++|
T Consensus 17 ~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~---~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F 88 (463)
T KOG0036|consen 17 RCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEA---AKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIF 88 (463)
T ss_pred HHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHH---HHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHH
Confidence 789999999999999 444 44666543233333 789999999999999999999999864 456889999
Q ss_pred HHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCccc-ccccc-------c----------------
Q 007303 260 KAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI-HLTLC-------F---------------- 315 (608)
Q Consensus 260 ~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di~-h~a~c-------~---------------- 315 (608)
+..|.++||.|+.+|+.+.+.+.+....+ ....++++.+|.++..+ ++..+ .
T Consensus 89 ~~iD~~hdG~i~~~Ei~~~l~~~gi~l~d----e~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~h~~~ 164 (463)
T KOG0036|consen 89 QSIDLEHDGKIDPNEIWRYLKDLGIQLSD----EKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWRHVLL 164 (463)
T ss_pred hhhccccCCccCHHHHHHHHHHhCCccCH----HHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhhhheE
Confidence 99999999999999999999999877665 46677888888776653 22222 1
Q ss_pred -ccCCcceeeeccccccchhhHHHHHHhh
Q 007303 316 -DEGTGNQVMTGGFLTDKQASNVWMFKLS 343 (608)
Q Consensus 316 -~~~~~~~~~~~gfv~~~~A~~kw~~k~l 343 (608)
+-+. +..+..|+..-.+-+-.|+.-++
T Consensus 165 idigE-~~~iPdg~s~~e~~~g~ww~~li 192 (463)
T KOG0036|consen 165 IDIGE-DAVLPDGDSKLENDSGRWWGFLI 192 (463)
T ss_pred EEccc-cccCCcchHHHHhcccchhhhhc
Confidence 1111 23445777777777777876665
No 143
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.25 E-value=2.9e-06 Score=72.41 Aligned_cols=65 Identities=23% Similarity=0.269 Sum_probs=56.0
Q ss_pred HHHHHhcc-cccCCCC-cccHHHHHHHHHHh-----cCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 218 FARRILSI-VDYNQDG-QLSFKEFSDLISAF-----GNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 218 ~l~~~f~~-~D~d~dG-~Is~eEf~~~l~~l-----g~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
.+..+|+. +|.|++| .|+.+||..++... +....+.+++++++.+|.|+||.|+++||..++..+
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 37889988 7888986 99999999999874 334567899999999999999999999999988664
No 144
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.24 E-value=1.5e-06 Score=72.01 Aligned_cols=75 Identities=21% Similarity=0.362 Sum_probs=62.3
Q ss_pred EEEEEeeee-------eccCCCceEEEecCc--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGE--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
+.|+|.+|+ .+..|||+.+...+. ..++|++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-------------------------------------- 42 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKK-------------------------------------- 42 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBS--------------------------------------
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeee--------------------------------------
Confidence 568889988 368899988865555 459999999
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcce
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYC 168 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~ 168 (608)
++.+|.|++.+.+.+.......+.++|||++..++++++|.+
T Consensus 43 ~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~ 84 (85)
T PF00168_consen 43 NTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDELIGEV 84 (85)
T ss_dssp SBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEEEEEE
T ss_pred ccccceeeeeeeeeeecccccceEEEEEECCCCCCCCEEEEE
Confidence 999999999888887555445599999999999999999965
No 145
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.21 E-value=3.5e-06 Score=75.41 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=51.8
Q ss_pred HHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 218 FARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 218 ~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
.+..+|..+|.|+||.|+.+|+..+. + ...+..+..+|+.+|.|+||.||++||..++
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 38899999999999999999999876 2 2345678999999999999999999999998
No 146
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=98.19 E-value=4.5e-06 Score=77.78 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=74.4
Q ss_pred eeeEEEEEEeeee--eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCC
Q 007303 52 FAGIALLTLISAE--MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTD 129 (608)
Q Consensus 52 ~~~~~~~~~~~a~--~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tl 129 (608)
+.--+.|.+++|+ ..+.|||+.+..-+....||+++. ++.
T Consensus 9 ~~~sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~~vaRT~v~~--------------------------------------~~~ 50 (146)
T cd04013 9 TENSLKLWIIEAKGLPPKKRYYCELCLDKTLYARTTSKL--------------------------------------KTD 50 (146)
T ss_pred EEEEEEEEEEEccCCCCcCCceEEEEECCEEEEEEEEEc--------------------------------------CCC
Confidence 3457889999999 466677766644444557999999 999
Q ss_pred CCccccccceeeccCCCcceeeEEeeccc-cc---cCCcCcceeeecccccccCcchhhhhhhccCCCCCc
Q 007303 130 KPIWNSEKKLLLETNGPHVARISVFETNR-LS---KSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSSSN 196 (608)
Q Consensus 130 nP~wne~~~~~ve~~~~~~l~~~v~D~D~-~s---~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~dG 196 (608)
||.|+|+|.|..-.. ...+.+.+++.+. .+ ++++||.+.|++.++...... ..+|.+++.+++.
T Consensus 51 nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~v--e~Wfpl~~~~~~~ 118 (146)
T cd04013 51 TLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFV--EKWYPVSTPKGNG 118 (146)
T ss_pred CCcceeeEEecCCCc-ccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcc--cEEEEeecCCCCC
Confidence 999999777654222 2458889975543 22 578999999999997744333 4578887766553
No 147
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.14 E-value=2.2e-06 Score=77.60 Aligned_cols=101 Identities=27% Similarity=0.374 Sum_probs=82.1
Q ss_pred CCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccH-HHHHHHHHHhcCCCCcccCHHHHHHHHHhhcc-cC
Q 007303 209 EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAA-NKKEELFKAADKNGDGVVSVDELAALLALQQE-KE 286 (608)
Q Consensus 209 ~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~-eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e-~~ 286 (608)
+.|...+..|-+++-+.|..||+|.+++++|..++..+.+..+. -++.-+|+.+|-|+|+.|..+++...+..+.. ..
T Consensus 63 kMPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eL 142 (189)
T KOG0038|consen 63 KMPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDEL 142 (189)
T ss_pred hChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccC
Confidence 35666777777889999999999999999999999887765554 36788999999999999999999999988752 23
Q ss_pred cccCCchhHHHhHhhhcccCccc
Q 007303 287 PLMNCCPVCGETLEVADMVNTMI 309 (608)
Q Consensus 287 ~~~~~~~~~~~~l~~~D~~~di~ 309 (608)
..++...+|.+++.++|.++|..
T Consensus 143 s~eEv~~i~ekvieEAD~DgDgk 165 (189)
T KOG0038|consen 143 SDEEVELICEKVIEEADLDGDGK 165 (189)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCc
Confidence 33333357999999999998874
No 148
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=1.9e-06 Score=88.01 Aligned_cols=124 Identities=22% Similarity=0.297 Sum_probs=89.8
Q ss_pred eeccccccCCcCcceeeecccc---cccCcchh------hhhhhccCCCCCchh-hHHHHhhcCCCCC---h-hhhHHHH
Q 007303 154 FETNRLSKSNLEGYCEVDLLEF---LTKDSDAD------SEVFDLLDPSSSNKI-VGKISLSCSVEDP---I-ETEKSFA 219 (608)
Q Consensus 154 ~D~D~~s~~D~iG~~~i~l~el---Ls~ee~~~------~eiF~~~D~d~dGkI-l~ell~~l~~~~~---~-~~e~~~l 219 (608)
+|..+|..-|..|++.+++.|+ |-+++.+. .+...-+|+|+||+| +.+++.-+-.... . +.....-
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Er 243 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTER 243 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccH
Confidence 4455666667777899999997 44554443 456677999999999 6665544421111 1 1111113
Q ss_pred HHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHH
Q 007303 220 RRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAA 277 (608)
Q Consensus 220 ~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~ 277 (608)
.+.+...|.|+||+++-+|+...+..-+......+++.++...|.|+||+||++|+..
T Consensus 244 e~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 244 EQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 5778888999999999999998776556666778999999999999999999999875
No 149
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.11 E-value=8.4e-06 Score=72.58 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=56.2
Q ss_pred EEEEEeeee----eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCC
Q 007303 56 ALLTLISAE----MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKP 131 (608)
Q Consensus 56 ~~~~~~~a~----~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP 131 (608)
+.|+|+.|+ ++.+|||+++.-.+....+|++++ . .||
T Consensus 2 L~v~vi~a~~l~~~~~~dpyv~v~~~~~~~~kT~~~~--------------------------------------~-~~P 42 (117)
T cd08383 2 LRLRILEAKNLPSKGTRDPYCTVSLDQVEVARTKTVE--------------------------------------K-LNP 42 (117)
T ss_pred eEEEEEEecCCCcCCCCCceEEEEECCEEeEecceEE--------------------------------------C-CCC
Confidence 467788877 378999987754444568999999 8 999
Q ss_pred ccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 132 IWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 132 ~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
.|||+|.+.+... ....+.+.++|.+..++++.+| .+++.+
T Consensus 43 ~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g--~v~l~~ 85 (117)
T cd08383 43 FWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIG--KVALSK 85 (117)
T ss_pred cccceEEEecCCccccEEEEEEEEEecccCCCeeEEE--EEEecC
Confidence 9999887777443 2345777778777665555555 555555
No 150
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.10 E-value=1.4e-05 Score=73.29 Aligned_cols=85 Identities=14% Similarity=0.287 Sum_probs=68.1
Q ss_pred HHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhc-ccCcccCCchh
Q 007303 216 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ-EKEPLMNCCPV 294 (608)
Q Consensus 216 ~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~-e~~~~~~~~~~ 294 (608)
-++.+++|..+|.|+||.|+.+++..++.++|...++++++.|++.. .|.|++.-|..++-+.- ...|+ .+
T Consensus 31 IqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe----~~ 102 (171)
T KOG0031|consen 31 IQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPE----EV 102 (171)
T ss_pred HHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHH----HH
Confidence 34489999999999999999999999999999999999999999875 57899999988775532 22233 46
Q ss_pred HHHhHhhhcccCcc
Q 007303 295 CGETLEVADMVNTM 308 (608)
Q Consensus 295 ~~~~l~~~D~~~di 308 (608)
+..++...|.++..
T Consensus 103 I~~AF~~FD~~~~G 116 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSG 116 (171)
T ss_pred HHHHHHhcCccCCC
Confidence 77777777766443
No 151
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.06 E-value=1e-05 Score=74.21 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=62.3
Q ss_pred cCCCceEEEecC--cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCC--Cccccccceeec
Q 007303 67 FKDKWLACVSLG--EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDK--PIWNSEKKLLLE 142 (608)
Q Consensus 67 ~~d~~~~~~~~~--~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tln--P~wne~~~~~ve 142 (608)
.+|||+++...+ ....+|.|+. +++| |.||++|.+.+.
T Consensus 24 ~sD~yVK~~L~~~~~~kqkTDVHy--------------------------------------rslnG~~~FNwRfvF~~~ 65 (133)
T cd08374 24 MSDIYVKGWLDGLEEDKQKTDVHY--------------------------------------RSLDGEGNFNWRFVFPFD 65 (133)
T ss_pred ccCeEEEEEEccCcccccccceEE--------------------------------------ecCCCCcEEeEEEEEeee
Confidence 599999998776 4779999999 9999 999998887763
Q ss_pred c-----------------------CCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 143 T-----------------------NGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 143 ~-----------------------~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
. -....+.+++||.|.++.+|++|..++++..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 66 YLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred cCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 3 1356799999999999999999999999998543
No 152
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.04 E-value=1.4e-05 Score=72.48 Aligned_cols=114 Identities=13% Similarity=0.263 Sum_probs=81.2
Q ss_pred ceeeecccccccCcchh----hhhhhccCCCCCchh-hHHHHhhc---CCCCChhhhHHHHHHHhcccccCCCCcccHHH
Q 007303 167 YCEVDLLEFLTKDSDAD----SEVFDLLDPSSSNKI-VGKISLSC---SVEDPIETEKSFARRILSIVDYNQDGQLSFKE 238 (608)
Q Consensus 167 ~~~i~l~elLs~ee~~~----~eiF~~~D~d~dGkI-l~ell~~l---~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eE 238 (608)
.+.++.+.+-...+..+ +++.+.+..++.|.+ +..++..+ ....|.+.. +.-+|+.+|-|+|+.|..++
T Consensus 53 ~v~vp~e~i~kMPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK---~~YAFkIYDfd~D~~i~~~D 129 (189)
T KOG0038|consen 53 IVKVPFELIEKMPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLK---AKYAFKIYDFDGDEFIGHDD 129 (189)
T ss_pred ceeecHHHHhhChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhh---hhheeEEeecCCCCcccHHH
Confidence 34566665433333332 567778888999988 44443322 222333333 67799999999999999999
Q ss_pred HHHHHHHhc-CcccHHHH----HHHHHHhcCCCCcccCHHHHHHHHHhhc
Q 007303 239 FSDLISAFG-NQVAANKK----EELFKAADKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 239 f~~~l~~lg-~~~~~eel----~~~F~~~D~d~dG~Is~eEf~~~l~~~~ 283 (608)
+...+..+. ..++++++ +++++.+|.||||+|++.||..++.+.+
T Consensus 130 L~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 130 LEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 999998853 45666664 6778899999999999999999886644
No 153
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.00 E-value=9.9e-06 Score=88.52 Aligned_cols=111 Identities=18% Similarity=0.275 Sum_probs=89.4
Q ss_pred ccccchhhccCCCCCCCCCcccccccccccee---eEEEEEEeeee------eccCCCceEEEecC-c----ceEEeeee
Q 007303 22 FHLHRERRRSRGNGSNSGSHHHNRVLNEEDFA---GIALLTLISAE------MKFKDKWLACVSLG-E----QTCRTAIS 87 (608)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~a~------~~~~d~~~~~~~~~-~----~~~~t~v~ 87 (608)
..++.++..+.++..++|+ +++.|||.. .++.+.+.+-. +.++|||++.++.. + ..+||+++
T Consensus 106 ~~~~~~l~~~~~~~~~~g~----iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~ 181 (529)
T KOG1327|consen 106 SGLTGPLLLKPGKNAGSGT----ITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVV 181 (529)
T ss_pred hhhhhhhhcccCccCCccc----EEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeecccccee
Confidence 3446666677778888888 999999987 45666665433 69999999998663 2 46899999
Q ss_pred hhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceee----ccCCCcceeeEEeeccccccCC
Q 007303 88 DKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLL----ETNGPHVARISVFETNRLSKSN 163 (608)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~v----e~~~~~~l~~~v~D~D~~s~~D 163 (608)
+ +|+||.|.+ +.+.+ ..+.++.+.+.|||+|..++||
T Consensus 182 ~--------------------------------------n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~ 222 (529)
T KOG1327|consen 182 K--------------------------------------NTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHD 222 (529)
T ss_pred c--------------------------------------cCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcC
Confidence 9 999999997 55554 4456788999999999999999
Q ss_pred cCcceeeecccc
Q 007303 164 LEGYCEVDLLEF 175 (608)
Q Consensus 164 ~iG~~~i~l~el 175 (608)
++|.+..++.++
T Consensus 223 ~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 223 LIGKFQTTLSEL 234 (529)
T ss_pred ceeEecccHHHh
Confidence 999999999984
No 154
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.97 E-value=7.1e-06 Score=54.72 Aligned_cols=28 Identities=29% Similarity=0.609 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 254 KKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 254 el~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
+++++|+.+|+|+||+|+++||..++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3556666666666666666666666543
No 155
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.96 E-value=1e-05 Score=64.52 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=46.8
Q ss_pred hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 243 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l 243 (608)
.++|+.+|.+++|+| +..++..+....+....++.++.+|+.+|.|+||.|+++||..++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 468999999999999 555666664333334444558888999999999999999999875
No 156
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.89 E-value=2.7e-05 Score=66.30 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=55.1
Q ss_pred HHHHhcccccC--CCCcccHHHHHHHHH-HhcCccc----HHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDYN--QDGQLSFKEFSDLIS-AFGNQVA----ANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~d--~dG~Is~eEf~~~l~-~lg~~~~----~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+-.+|..++.. ++|.|+.+||..++. .++...+ +++++.+|+.+|.|++|.|+++||..++...
T Consensus 10 ~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 10 IINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 66788888865 479999999999997 4665565 8899999999999999999999999988654
No 157
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=97.89 E-value=5.5e-05 Score=63.96 Aligned_cols=84 Identities=19% Similarity=0.357 Sum_probs=66.1
Q ss_pred EEEEEeeee-------eccCCCceEEEecCc--ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGE--QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~--~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
+.++++.|+ .+..+||+.+...+. ...+|+++.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-------------------------------------- 43 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-------------------------------------- 43 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec--------------------------------------
Confidence 456777776 146788877755554 689999999
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs 177 (608)
++.||.|++.+.+.+.......+.+++||.+..+.+.++|.+.+++.++..
T Consensus 44 ~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 44 NTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred CCCCCcccceEEEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHccc
Confidence 888999999777776554357899999999998888999999999888543
No 158
>PF14658 EF-hand_9: EF-hand domain
Probab=97.76 E-value=7.5e-05 Score=59.41 Aligned_cols=62 Identities=16% Similarity=0.315 Sum_probs=55.4
Q ss_pred HHhcccccCCCCcccHHHHHHHHHHhcC-cccHHHHHHHHHHhcCCCC-cccCHHHHHHHHHhh
Q 007303 221 RILSIVDYNQDGQLSFKEFSDLISAFGN-QVAANKKEELFKAADKNGD-GVVSVDELAALLALQ 282 (608)
Q Consensus 221 ~~f~~~D~d~dG~Is~eEf~~~l~~lg~-~~~~eel~~~F~~~D~d~d-G~Is~eEf~~~l~~~ 282 (608)
.+|+++|.++.|.|...++..+|..++. ..++++++.+.+.+|.++. |.|+++.|..+|+++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 3689999999999999999999999887 6777899999999999987 999999999998764
No 159
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.71 E-value=3.2e-05 Score=51.56 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=25.5
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
++++|+.+|.|+||+|+++||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 789999999999999999999999875
No 160
>PLN02964 phosphatidylserine decarboxylase
Probab=97.69 E-value=0.00011 Score=83.44 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=68.6
Q ss_pred hhHHHHHHHhcccccCCCCcccHHHHHHHHHHhc-CcccHHH---HHHHHHHhcCCCCcccCHHHHHHHHHhhcccCccc
Q 007303 214 TEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANK---KEELFKAADKNGDGVVSVDELAALLALQQEKEPLM 289 (608)
Q Consensus 214 ~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg-~~~~~ee---l~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~ 289 (608)
.+.+.++++|+.+|.|++|.+ +..++..+| ...++++ ++++|+.+|.|++|.|+++||..++..+++..++
T Consensus 140 kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~se- 214 (644)
T PLN02964 140 QEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAA- 214 (644)
T ss_pred HHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCH-
Confidence 333448999999999999997 777777788 4556655 8999999999999999999999999877653333
Q ss_pred CCchhHHHhHhhhcccCcc
Q 007303 290 NCCPVCGETLEVADMVNTM 308 (608)
Q Consensus 290 ~~~~~~~~~l~~~D~~~di 308 (608)
..+.++++..|.+++.
T Consensus 215 ---EEL~eaFk~fDkDgdG 230 (644)
T PLN02964 215 ---NKKEELFKAADLNGDG 230 (644)
T ss_pred ---HHHHHHHHHhCCCCCC
Confidence 4577788777776653
No 161
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=97.66 E-value=0.00015 Score=60.79 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=65.2
Q ss_pred EEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCC
Q 007303 57 LLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTD 129 (608)
Q Consensus 57 ~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tl 129 (608)
.|++++|+ ....+||+.+...+....+|+++. .+.
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~--------------------------------------~~~ 43 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK--------------------------------------NTL 43 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC--------------------------------------CCC
Confidence 45666665 246888877755555889999999 889
Q ss_pred CCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 130 KPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 130 nP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
||.|++.+.+.+.......+.++++|++..+.++++|.+.+++.++.
T Consensus 44 ~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 44 NPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 99999977776655335679999999999888999999999998854
No 162
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.64 E-value=0.00012 Score=69.97 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=59.8
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
...+|+.+|.+.||+|++.|+..+|..+|.+.+---++.+++..|.|.||+||+-||.-+++..
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 6789999999999999999999999999988888889999999999999999999999887664
No 163
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.56 E-value=0.00026 Score=76.43 Aligned_cols=132 Identities=14% Similarity=0.152 Sum_probs=95.6
Q ss_pred CChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCc---ccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccC
Q 007303 210 DPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQ---VAANKKEELFKAADKNGDGVVSVDELAALLALQQEKE 286 (608)
Q Consensus 210 ~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~---~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~ 286 (608)
..+..|...+++.|...| |++|+|+..|+..++...+.. ...++++++....+.|.+|.|++|||..++.....+.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~~ 90 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSKD 90 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhhh
Confidence 344555556889999999 999999999999999875433 3568899999999999999999999999775543322
Q ss_pred cccCCchhHHHhHhhhcccCcccccccccccCCcceeeeccccccchhhHHHHHHhhc-cccccccccCCCCC
Q 007303 287 PLMNCCPVCGETLEVADMVNTMIHLTLCFDEGTGNQVMTGGFLTDKQASNVWMFKLSE-WGHFSSYDVGLNSG 358 (608)
Q Consensus 287 ~~~~~~~~~~~~l~~~D~~~di~h~a~c~~~~~~~~~~~~gfv~~~~A~~kw~~k~l~-~~~~~~y~~~~~~~ 358 (608)
.. + +. ........+.-.++++++|.+ ..+++-+|.+|+++.|+ ..-.+.+ ++.++.
T Consensus 91 ~~--------k-~~--~g~~~~~~~~~~sst~~~Hti----~eeEk~~fv~hIN~~L~~Dpdl~~~-lPinp~ 147 (627)
T KOG0046|consen 91 IA--------K-IG--EGIKAASGTLKGSSTGTQHTI----NEEEKRAFVNHINSYLEGDPDLKHL-LPINPN 147 (627)
T ss_pred hh--------h-hc--CCcccccceeecccccceeee----cHHHHHHHHHHHHHHhcCCcchhhc-CCCCCc
Confidence 11 1 11 111112244555677889999 88999999999999996 4445554 454433
No 164
>PLN02952 phosphoinositide phospholipase C
Probab=97.51 E-value=0.00018 Score=80.93 Aligned_cols=86 Identities=20% Similarity=0.230 Sum_probs=69.1
Q ss_pred eeEEEEEEeeeee---cc----------CCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHH
Q 007303 53 AGIALLTLISAEM---KF----------KDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLF 115 (608)
Q Consensus 53 ~~~~~~~~~~a~~---~~----------~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~ 115 (608)
...+.|+|++|+. .+ -|||+++.-.| ....+|++++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~--------------------------- 521 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIE--------------------------- 521 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeecc---------------------------
Confidence 3578999999972 11 27888876555 3567999999
Q ss_pred HHHhhhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 116 SFLFVISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 116 ~~~~~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
++.||+||++|.|.+....--.++|.|+|+|..+.+|++|...+++..+.
T Consensus 522 -----------nN~nPvWnE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr 571 (599)
T PLN02952 522 -----------DNWYPAWNEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELR 571 (599)
T ss_pred -----------CCCCcccCCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhc
Confidence 99999999988887765544568899999999999999999999999953
No 165
>PLN02223 phosphoinositide phospholipase C
Probab=97.46 E-value=0.00022 Score=78.77 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=68.0
Q ss_pred eeEEEEEEeeeee------------ccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHH
Q 007303 53 AGIALLTLISAEM------------KFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFS 116 (608)
Q Consensus 53 ~~~~~~~~~~a~~------------~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 116 (608)
..++.|+|++|+. ..-|||+.+--.| ....+|+|..
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~n---------------------------- 459 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKN---------------------------- 459 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCC----------------------------
Confidence 3578999999972 1237887765333 2457888777
Q ss_pred HHhhhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 117 FLFVISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 117 ~~~~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
++.||.|||+|.|.+....--.++|.|+|+|..+++|++|...+++..+
T Consensus 460 ----------Ng~nPvWne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~L 508 (537)
T PLN02223 460 ----------NEWKPTWGEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSEL 508 (537)
T ss_pred ----------CCcCceecceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHh
Confidence 8999999999988887665556899999999999999999999999985
No 166
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.38 E-value=0.00052 Score=62.16 Aligned_cols=60 Identities=15% Similarity=0.367 Sum_probs=54.2
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
.-+-++.||++++|.|...|++.+|..+|+.+++++++.+..-. .|.+|.|+|++|.+.+
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 56788999999999999999999999999999999999988765 3778999999999865
No 167
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00036 Score=76.36 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=66.0
Q ss_pred eeEEEEEEeeee-------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 53 AGIALLTLISAE-------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 53 ~~~~~~~~~~a~-------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
+|.+.|.|+.|+ -+.+|||+.++.... ...+|.+.+
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~--------------------------------- 343 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK--------------------------------- 343 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc---------------------------------
Confidence 589999999999 389999999874432 357888999
Q ss_pred hhcccCCCCCccccccceeeccC--CCcceeeEEeeccccccCCcCcceeeecc
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLL 173 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~ 173 (608)
+++||+|||.|.|.+..+ .+..+.++|||+|.++.+++||.+.+-..
T Consensus 344 -----~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~ 392 (421)
T KOG1028|consen 344 -----KTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSD 392 (421)
T ss_pred -----CCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCC
Confidence 999999999777755322 44568999999999999999995554443
No 168
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.33 E-value=0.00044 Score=74.63 Aligned_cols=50 Identities=30% Similarity=0.497 Sum_probs=45.9
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
++.+|+.+|.|+||.|+.+||.. ++.+|+.+|.|+||.|+++||.+++..
T Consensus 336 l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 336 AQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 89999999999999999999942 578999999999999999999998864
No 169
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.33 E-value=0.00019 Score=62.03 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=48.9
Q ss_pred ccCcchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 177 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 177 s~ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
+.++... .+.|..+|.+++|.| +..++... .....+ +++++..+|.+++|.|+++||..++..+
T Consensus 5 s~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~e---v~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 5 SPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTL---LAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHH---HHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3334444 789999999999999 44445443 234444 8999999999999999999999988753
No 170
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.32 E-value=0.00026 Score=60.38 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=47.4
Q ss_pred hhhhhccCC-CCCchh----hHHHHhh-cCCCCChh-hhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLDP-SSSNKI----VGKISLS-CSVEDPIE-TEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~~D~-d~dGkI----l~ell~~-l~~~~~~~-~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
...|..+|. +++|+| ++.++.. ++. ..+. .+ ++++++.+|.|+||.|+|+||..++..+
T Consensus 11 ~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~-~ls~~~~---v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 11 VSNFHKASVKGGKESLTASEFQELLTQQLPH-LLKDVEG---LEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHhCCCCCCeECHHHHHHHHHHHhhh-hccCHHH---HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 578999999 999999 6666665 432 2333 34 8999999999999999999999998764
No 171
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=97.20 E-value=0.00058 Score=80.12 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=71.4
Q ss_pred eeEEEEEEeeee---------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhh
Q 007303 53 AGIALLTLISAE---------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISF 123 (608)
Q Consensus 53 ~~~~~~~~~~a~---------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 123 (608)
.|++.|++.+|+ -+..|||+.+-..+...=||++.+
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~----------------------------------- 479 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKK----------------------------------- 479 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceee-----------------------------------
Confidence 399999999999 388899999875554455999999
Q ss_pred cccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 124 FWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 124 ~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
+++||+|||++=++++. ....|.++|||.+...+++.+|...+++..+.
T Consensus 480 ---nt~nPvwNEt~Yi~lns-~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~ 528 (1227)
T COG5038 480 ---NTLNPVWNETFYILLNS-FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLH 528 (1227)
T ss_pred ---ccCCccccceEEEEecc-cCCceeEEEEeccccCCcceeeeEEechHHhh
Confidence 99999999966555553 34679999999999999999999999988864
No 172
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.19 E-value=0.00037 Score=47.04 Aligned_cols=26 Identities=46% Similarity=0.744 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHHH
Q 007303 255 KEELFKAADKNGDGVVSVDELAALLA 280 (608)
Q Consensus 255 l~~~F~~~D~d~dG~Is~eEf~~~l~ 280 (608)
++++|+.+|.|++|+|+.+||.++++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 34455555555555555555555554
No 173
>PF14658 EF-hand_9: EF-hand domain
Probab=97.19 E-value=0.00062 Score=54.23 Aligned_cols=58 Identities=17% Similarity=0.372 Sum_probs=51.1
Q ss_pred hhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCC-CcccHHHHHHHHHH
Q 007303 185 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQD-GQLSFKEFSDLISA 245 (608)
Q Consensus 185 eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~d-G~Is~eEf~~~l~~ 245 (608)
..|+.+|+++.|.| +..+++++....|.+.+ ++.+.+.+|+++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~---Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESE---LQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHH---HHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 36899999999998 77788888776788777 9999999999998 99999999999864
No 174
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.18 E-value=0.001 Score=50.02 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 233 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 233 ~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
++++.|...+|..+.-.+.++-+..+|+..|++++|.|..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 47899999999999888999999999999999999999999999998754
No 175
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.17 E-value=0.0015 Score=55.65 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHH-----hcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISA-----FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~-----lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+-.+|..|- .+.+.++..||..++.. +.....++.++++|+..|.|+||.|+|.||..++..+
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 566777776 34579999999999976 2344456789999999999999999999999998664
No 176
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.15 E-value=0.00065 Score=57.82 Aligned_cols=59 Identities=17% Similarity=0.352 Sum_probs=47.9
Q ss_pred hhhhhccC-CCCCc-hh----hHHHHhh-----cCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLD-PSSSN-KI----VGKISLS-----CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~~D-~d~dG-kI----l~ell~~-----l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
.++|..+| .+++| +| ++.++.. ++ ..+++.+ ++++++.+|.|++|.|+|+||..++..+
T Consensus 11 ~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg-~~~~~~~---v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 11 IDVFHQYSGREGDKHKLKKSELKELINNELSHFLE-EIKEQEV---VDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhc-CCCCHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 67899998 79999 58 6667766 44 3455555 8999999999999999999999988653
No 177
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.00044 Score=75.89 Aligned_cols=82 Identities=15% Similarity=0.314 Sum_probs=63.6
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhccc
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWC 126 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 126 (608)
.-+++|+..|+ .|++|||+.. ..|+..-||+.|-
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~-qv~ktkrrtrti~-------------------------------------- 335 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTA-QVGKTKRRTRTIH-------------------------------------- 335 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEE-eecccchhhHhhh--------------------------------------
Confidence 35667777776 5999999765 5777788999998
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeecccc-----------ccCCcCcceeeecccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRL-----------SKSNLEGYCEVDLLEF 175 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~-----------s~~D~iG~~~i~l~el 175 (608)
..+||+|||.|.|.+.. ....+++.|||.|.. .++|++|...|.+..+
T Consensus 336 ~~lnpvw~ekfhfechn-stdrikvrvwded~dlksklrqkl~resddflgqtvievrtl 394 (1283)
T KOG1011|consen 336 QELNPVWNEKFHFECHN-STDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTL 394 (1283)
T ss_pred hccchhhhhheeeeecC-CCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEec
Confidence 99999999966655533 346799999999864 4678999887777654
No 178
>PLN02230 phosphoinositide phospholipase C 4
Probab=97.14 E-value=0.00069 Score=76.27 Aligned_cols=84 Identities=23% Similarity=0.229 Sum_probs=68.2
Q ss_pred eEEEEEEeeeee-----cc--------CCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHH
Q 007303 54 GIALLTLISAEM-----KF--------KDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFS 116 (608)
Q Consensus 54 ~~~~~~~~~a~~-----~~--------~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~ 116 (608)
..+.|+|++++. .. -|||+++--.| ....+|++..
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~---------------------------- 520 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEY---------------------------- 520 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccC----------------------------
Confidence 578999999982 11 37888875444 2446888888
Q ss_pred HHhhhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 117 FLFVISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 117 ~~~~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
++.||.|||+|.|.+...+--.++|.|+|+|..+++|++|...+++.++
T Consensus 521 ----------n~~nP~Wneef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~L 569 (598)
T PLN02230 521 ----------DTWTPIWNKEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEI 569 (598)
T ss_pred ----------CCCCCccCCeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHh
Confidence 9999999998888776665566999999999999999999999999984
No 179
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.13 E-value=0.00061 Score=54.01 Aligned_cols=55 Identities=22% Similarity=0.329 Sum_probs=43.3
Q ss_pred hhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 185 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 185 eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
+.|..+|++++|.| +..++..++ .+..+ ++++|+.+|.+++|.|+++||..++..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~---~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSG---LPRSV---LAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHH---HHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999 444444442 23333 899999999999999999999998865
No 180
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.10 E-value=0.00046 Score=44.34 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=14.4
Q ss_pred HHHHHHhcCCCCcccCHHHHHHH
Q 007303 256 EELFKAADKNGDGVVSVDELAAL 278 (608)
Q Consensus 256 ~~~F~~~D~d~dG~Is~eEf~~~ 278 (608)
+++|+.+|.|+||.||.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45566666666666666666654
No 181
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.06 E-value=0.00054 Score=46.23 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=25.6
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHH-Hhc
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLIS-AFG 247 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~-~lg 247 (608)
++.+|+.+|.|++|.|+.+||..++. ++|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 78999999999999999999999998 554
No 182
>PLN02270 phospholipase D alpha
Probab=97.05 E-value=0.0012 Score=76.09 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=69.6
Q ss_pred ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC-CCCccccccceeeccC
Q 007303 66 KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST-DKPIWNSEKKLLLETN 144 (608)
Q Consensus 66 ~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t-lnP~wne~~~~~ve~~ 144 (608)
+.+|||+.+...+..+-||+|++ +. .||.|+|+|.+++...
T Consensus 45 ~~~~~y~tv~~~~a~v~rtr~~~--------------------------------------~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 45 GESQLYATIDLEKARVGRTRKIE--------------------------------------NEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred CCCCceEEEEeCCcEEEEEeecC--------------------------------------CCCCCCccccceEEeeccC
Confidence 45689988766677888999999 74 6999999888888665
Q ss_pred CCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCCC
Q 007303 145 GPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 194 (608)
Q Consensus 145 ~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~ 194 (608)
- ..+.|+|-|.|-++.. +||.+.++.+++++.++. ...|..+|.++
T Consensus 87 ~-~~v~f~vkd~~~~g~~-~ig~~~~p~~~~~~g~~i--~~~~~~~~~~~ 132 (808)
T PLN02270 87 A-SNIIFTVKDDNPIGAT-LIGRAYIPVEEILDGEEV--DRWVEILDNDK 132 (808)
T ss_pred c-ceEEEEEecCCccCce-EEEEEEEEHHHhcCCCcc--ccEEeccCCCC
Confidence 3 5689999999988775 999999999998876654 34677777653
No 183
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.02 E-value=0.00085 Score=57.69 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=44.5
Q ss_pred hhhhhccC-CCCCc-hh----hHHHHhhcC----CCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLD-PSSSN-KI----VGKISLSCS----VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~~D-~d~dG-kI----l~ell~~l~----~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
.++|..+| .+++| +| ++.++.... .......+ +.++++.+|.|+||.|+|+||..++..+
T Consensus 13 ~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~---v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 13 IRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPML---VDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHH---HHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56799999 78998 58 555554321 11223333 9999999999999999999999998765
No 184
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.99 E-value=0.0011 Score=74.96 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=69.8
Q ss_pred EEEEEEeeee----------e-ccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHh
Q 007303 55 IALLTLISAE----------M-KFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLF 119 (608)
Q Consensus 55 ~~~~~~~~a~----------~-~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (608)
.+.|.|++++ . -.+||++.+--.| ....+|++++
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~------------------------------- 665 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVK------------------------------- 665 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeec-------------------------------
Confidence 6889999999 1 4678887774333 3558999666
Q ss_pred hhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 120 VISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 120 ~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
.++-||.|+|+|.|.+..+.--.++|.|+|+|..+++|++|...+++.++
T Consensus 666 ------~NgfnP~W~e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L 715 (746)
T KOG0169|consen 666 ------NNGFNPIWDEEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSEL 715 (746)
T ss_pred ------cCCcCcccCCeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHh
Confidence 17789999999999998887677999999999999999999999999994
No 185
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=96.99 E-value=0.00027 Score=78.56 Aligned_cols=84 Identities=11% Similarity=0.234 Sum_probs=67.4
Q ss_pred eEEEEEEeeee-------eccCCCceEEEecCc------ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhh
Q 007303 54 GIALLTLISAE-------MKFKDKWLACVSLGE------QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFV 120 (608)
Q Consensus 54 ~~~~~~~~~a~-------~~~~d~~~~~~~~~~------~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 120 (608)
.-+.|.|+.|+ .|+||||+++-..+. ...+|+|++
T Consensus 947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~-------------------------------- 994 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVS-------------------------------- 994 (1103)
T ss_pred cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhh--------------------------------
Confidence 35566777777 599999988865554 236999999
Q ss_pred hhhcccCCCCCccccccceeec--cC--CCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 121 ISFFWCSTDKPIWNSEKKLLLE--TN--GPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 121 ~~~~~~~tlnP~wne~~~~~ve--~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
.|+||++.|.|.|.+. .- ..-.+.|+|+|+|-++.+|+-|+..+.+..+
T Consensus 995 ------rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 995 ------RTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred ------ccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCC
Confidence 9999999998888773 22 2345889999999999999999998888886
No 186
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=96.95 E-value=0.00087 Score=72.83 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=67.1
Q ss_pred eEEEEEEeeee----e----ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcc
Q 007303 54 GIALLTLISAE----M----KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFW 125 (608)
Q Consensus 54 ~~~~~~~~~a~----~----~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 125 (608)
|-+-|.+.+|+ | -..|-|+++ +++..+++|.|-.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafvei-k~~n~t~ktdvf~------------------------------------- 44 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEI-KFANTTFKTDVFL------------------------------------- 44 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEE-Eecccceehhhhh-------------------------------------
Confidence 45667777777 4 455677665 8899999999999
Q ss_pred cCCCCCcccc-ccceeeccC--CCcceeeEEeeccccccCCcCcceeeeccccc
Q 007303 126 CSTDKPIWNS-EKKLLLETN--GPHVARISVFETNRLSKSNLEGYCEVDLLEFL 176 (608)
Q Consensus 126 ~~tlnP~wne-~~~~~ve~~--~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elL 176 (608)
.++||.||. .|+|.+++. ++..+.+.++|+|..+.+|.||.+.+++..++
T Consensus 45 -kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 45 -KSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLC 97 (1169)
T ss_pred -hhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccChHH
Confidence 999999995 445555332 56779999999999999999999999999863
No 187
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.95 E-value=0.0013 Score=50.16 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=36.2
Q ss_pred Cchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 195 SNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 195 dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
+|.| +..++..++....++.+ +..+|..+|.|++|.|+++||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 4666 44555545432266666 899999999999999999999998864
No 188
>PLN02222 phosphoinositide phospholipase C 2
Probab=96.93 E-value=0.0018 Score=72.80 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=67.8
Q ss_pred eeEEEEEEeeeee-------------ccCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHH
Q 007303 53 AGIALLTLISAEM-------------KFKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLF 115 (608)
Q Consensus 53 ~~~~~~~~~~a~~-------------~~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~ 115 (608)
...+.|+|++++. .--|||+++--.| ....||++++
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~--------------------------- 503 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLE--------------------------- 503 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecC---------------------------
Confidence 3578899999861 1236787764333 3557999999
Q ss_pred HHHhhhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 116 SFLFVISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 116 ~~~~~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
++.||.|+|.|.|.+....--.++|.|+|+|..+.+|++|...+++..+
T Consensus 504 -----------nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~L 552 (581)
T PLN02222 504 -----------DNWIPAWDEVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWEL 552 (581)
T ss_pred -----------CCCCcccCCeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhh
Confidence 8899999998888776655466999999999999999999999999985
No 189
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.93 E-value=0.0027 Score=55.78 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=54.7
Q ss_pred hhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 007303 213 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 280 (608)
Q Consensus 213 ~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~ 280 (608)
+.+......+|+..|. ++|.|+-++...++.. ..++.+.+..+|...|.|+||+++++||.-+|+
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~--S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMK--SGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH--TTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH--cCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 3444557889999885 6899999999998865 458889999999999999999999999988774
No 190
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.81 E-value=0.001 Score=42.76 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.2
Q ss_pred HHHHhcccccCCCCcccHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLI 243 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l 243 (608)
++.+|+.+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 191
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.80 E-value=0.0026 Score=67.56 Aligned_cols=63 Identities=24% Similarity=0.453 Sum_probs=55.7
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhc----CcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFG----NQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg----~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
+..+|+.+|.|++|.||.+||.+++..++ ...+++++.++=+.+|.|+||.|++.||.+.++-
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 56799999999999999999999988754 3467889999999999999999999999998854
No 192
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.78 E-value=0.0014 Score=56.44 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=45.6
Q ss_pred hhhhhccCC-CC-Cchh----hHHHHhh-cC---CCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhc
Q 007303 184 SEVFDLLDP-SS-SNKI----VGKISLS-CS---VEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFG 247 (608)
Q Consensus 184 ~eiF~~~D~-d~-dGkI----l~ell~~-l~---~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg 247 (608)
.+.|..+|. ++ +|+| +..++.. ++ ...++..+ ++.+++.+|.|++|.|+++||..++...+
T Consensus 11 ~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~e---i~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 11 ILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMA---VDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHH---HHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 678999997 87 6999 4444443 11 12344444 89999999999999999999999887643
No 193
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.77 E-value=0.002 Score=55.08 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=46.0
Q ss_pred hhhhhccC-CCCCc-hh----hHHHHhh-cCC---CCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLD-PSSSN-KI----VGKISLS-CSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~~D-~d~dG-kI----l~ell~~-l~~---~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
.+.|..+| .+++| +| +..++.. ++. ..++..+ ++++|+.+|.|++|.|+|+||..++..+
T Consensus 12 ~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~---v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 12 INVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADA---VDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 67999997 99999 48 5555543 221 1234444 8999999999999999999999988764
No 194
>PLN02228 Phosphoinositide phospholipase C
Probab=96.70 E-value=0.0027 Score=71.29 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=67.4
Q ss_pred eeEEEEEEeeeee-------c------cCCCceEEEecC----cceEEeeeehhhhhhHhhccccchhhhhchhhhHHHH
Q 007303 53 AGIALLTLISAEM-------K------FKDKWLACVSLG----EQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLF 115 (608)
Q Consensus 53 ~~~~~~~~~~a~~-------~------~~d~~~~~~~~~----~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~ 115 (608)
...+.|+|++|++ . .-|||+++--.| ...+||++++
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~--------------------------- 482 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV--------------------------- 482 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC---------------------------
Confidence 3578899999973 1 157787764333 2457999999
Q ss_pred HHHhhhhhcccCCCCCcc-ccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 116 SFLFVISFFWCSTDKPIW-NSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 116 ~~~~~~~~~~~~tlnP~w-ne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
++.||.| ++.+.|.+....--.++|.|+|+|..+.+|++|...+++..+
T Consensus 483 -----------n~~nP~W~~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~L 532 (567)
T PLN02228 483 -----------DQWFPIWGNDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPEL 532 (567)
T ss_pred -----------CCCCceECCCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHh
Confidence 8899999 998888876554456899999999999999999999999984
No 195
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.63 E-value=0.0023 Score=54.48 Aligned_cols=59 Identities=15% Similarity=0.369 Sum_probs=45.5
Q ss_pred hhhhhccCC-CC-Cchh----hHHHHhh---cCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLDP-SS-SNKI----VGKISLS---CSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~~D~-d~-dGkI----l~ell~~---l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
-.+|..++. ++ +|+| +..++.. ++ ...+.++ +.++++.+|.|++|.|+|+||..++..+
T Consensus 13 i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-~k~t~~e---v~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 13 VAIFHKYSGREGDKNTLSKKELKELIQKELTIG-SKLQDAE---IAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-CCCCHHH---HHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 468888987 56 7888 5555542 33 3455555 8999999999999999999999988764
No 196
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=96.60 E-value=0.0014 Score=60.47 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=43.5
Q ss_pred hhhhhhhhhhhhcccccc-----cccchhHHHHHHHHHHHHHHhhCCccccccH
Q 007303 379 DVKIVMSMRAIYQSKIGL-----GLMDIGTKELLKSISEKQGRKMNSVESSKEI 427 (608)
Q Consensus 379 ~~~~~~~~~~~y~~~~g~-----~~l~~~~~~~l~~~s~~~g~~~~s~~S~~~I 427 (608)
.+.|++||+++..+++|. +|+++.||..+|.|.+.||.|+.||.|+..+
T Consensus 69 ~glvG~P~naiLdwpM~T~sG~a~F~~p~vN~~lK~ILn~W~~fL~sp~S~~vL 122 (141)
T PF12588_consen 69 VGLVGFPMNAILDWPMGTPSGYAFFLDPDVNAQLKKILNEWGEFLSSPASRSVL 122 (141)
T ss_pred CCccccChHHHHHhhccChHHHHHHcCHHHHHHHHHHHHHHHHHcCChhhhccc
Confidence 456778999999888875 6899999999999999999999999999865
No 197
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.44 E-value=0.0028 Score=53.62 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=45.2
Q ss_pred hhhhhccCC--CCCchh----hHHHHhh-cCC---CCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLDP--SSSNKI----VGKISLS-CSV---EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~~D~--d~dGkI----l~ell~~-l~~---~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
.+.|..+|. +++|.| +..++.. ++. ..+...+ +.++++.+|.+++|.|+++||..++...
T Consensus 11 ~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~e---i~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 11 IDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEA---VDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHH---HHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 678999999 899999 4444433 221 1122344 8999999999999999999999988764
No 198
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.34 E-value=0.0034 Score=61.86 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=77.6
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcCCCCCh--hhhHHHHHHHhcccccCCCCcccHHHHHHHHHH-hcCc----------
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCSVEDPI--ETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQ---------- 249 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~~~~~~--~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~-lg~~---------- 249 (608)
..+|...|.+-|++| -+++.+.+...... ++....-+-.|+.+|+|+||.|+|+||.--+.. -+..
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairl 183 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRL 183 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhc
Confidence 678999999999999 44443333211100 111122466899999999999999999765443 2211
Q ss_pred ---ccHHHHHHHHHHhcCCCCcccC---------HHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCccc
Q 007303 250 ---VAANKKEELFKAADKNGDGVVS---------VDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMI 309 (608)
Q Consensus 250 ---~~~eel~~~F~~~D~d~dG~Is---------~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di~ 309 (608)
+.-++-.+.|..-+++.+++.+ -+||..++ +++....+.. -.+.+++..-|+++|-.
T Consensus 184 neelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL--HPEhSrgmLr-fmVkeivrdlDqdgDkq 252 (362)
T KOG4251|consen 184 NEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL--HPEHSRGMLR-FMVKEIVRDLDQDGDKQ 252 (362)
T ss_pred cCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc--ChHhhhhhHH-HHHHHHHHHhccCCCee
Confidence 1112334566666777666654 49999988 6655444333 25778888888877753
No 199
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=96.34 E-value=0.0047 Score=55.34 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=42.6
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 243 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l 243 (608)
.-.|..+|.|+||.| ..++.... . .+.+.. +..+|+.+|.|+||.||++||...+
T Consensus 51 ~w~F~~lD~d~DG~Ls~~EL~~~~-l-~~~e~~---~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 51 GWMFNQLDGNYDGKLSHHELAPIR-L-DPNEHC---IKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHH-c-cchHHH---HHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 568999999999999 44443222 1 233333 7899999999999999999999988
No 200
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.32 E-value=0.0071 Score=45.87 Aligned_cols=55 Identities=29% Similarity=0.455 Sum_probs=42.0
Q ss_pred hhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHH
Q 007303 185 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLI 243 (608)
Q Consensus 185 eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l 243 (608)
.+|..+|.+++|.| +..++..++. ...... +..+|+.+|.+++|.|+++||...+
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~---~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALKSLGE-GLSEEE---IDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHH---HHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 57888999999998 4444544432 333344 7889999999999999999998765
No 201
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=96.21 E-value=0.0052 Score=65.99 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=72.8
Q ss_pred hhccCCCCCchhhHHHHhhcCCCCChhhhHHHHHHHhcc----cccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHh
Q 007303 187 FDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSI----VDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 262 (608)
Q Consensus 187 F~~~D~d~dGkIl~ell~~l~~~~~~~~e~~~l~~~f~~----~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~ 262 (608)
|-.+|+|+||.|-++-+...+....+ ..+++++|.+ +-.-.+|.++|++|...+-++-.+.+..-++-.|+..
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d~tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrcl 360 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGDHTLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCL 360 (493)
T ss_pred HhhhccccccccCHHHHHHHhccchh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeee
Confidence 55689999998855544444333333 3458999983 3445689999999999998877777778899999999
Q ss_pred cCCCCcccCHHHHHHHHHhhc
Q 007303 263 DKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 263 D~d~dG~Is~eEf~~~l~~~~ 283 (608)
|.+++|.|+..|+..+....-
T Consensus 361 Dld~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 361 DLDGDGILTLNELRYFYEEQL 381 (493)
T ss_pred eccCCCcccHHHHHHHHHHHH
Confidence 999999999999988876643
No 202
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0036 Score=66.67 Aligned_cols=97 Identities=19% Similarity=0.337 Sum_probs=65.4
Q ss_pred hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh-------------
Q 007303 184 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF------------- 246 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l------------- 246 (608)
.-.|..+|+...|.| +.+++..... ...+.....++++-+.++.+ +-.||++||.+...-+
T Consensus 321 ~lEF~~~~~~~~g~Ise~DFA~~lL~~a~-~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy 398 (489)
T KOG2643|consen 321 ELEFERFDKGDSGAISEVDFAELLLAYAG-VNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFY 398 (489)
T ss_pred HHHHHHhCcccccccCHHHHHHHHHHHcc-cchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 345888888888888 6665555533 22233333477777777776 4459999988765432
Q ss_pred ---cC-----------------cccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 247 ---GN-----------------QVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 247 ---g~-----------------~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+. ++++.-++-+|..||.|+||.|+.+||..+|++.
T Consensus 399 ~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 399 HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 11 2222233456888999999999999999999875
No 203
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.17 E-value=0.0096 Score=61.15 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=85.0
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcCC-CCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH-hcCcccHHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCSV-EDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA-FGNQVAANKKEELFK 260 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~~-~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~-lg~~~~~eel~~~F~ 260 (608)
..+|.++|.+++|.+ +.+....+.. ..|.... ..++-+|+.|+.+.||.+.-.+|..++.. +| ...-.+--+|.
T Consensus 262 ~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~-~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~ 338 (412)
T KOG4666|consen 262 APTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTP-VIIQYAFKRFSVAEDGISGEHILSLILQVVLG--VEVLRVPVLFP 338 (412)
T ss_pred hhhhheecCCCCCcccHHHHhhhheeeeCCCCcH-HHHHHHHHhcccccccccchHHHHHHHHHhcC--cceeeccccch
Confidence 678999999999988 5554333221 1222222 23889999999999999999999888876 33 44446778899
Q ss_pred HhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhhhcccCccccccccccc
Q 007303 261 AADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEVADMVNTMIHLTLCFDE 317 (608)
Q Consensus 261 ~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~~D~~~di~h~a~c~~~ 317 (608)
..+...||+|++++|++++..+++..- + ...-.+.++.|...|...
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~p~~a~----------~-~~~yld~~~~H~~s~~~~ 384 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATEPNLAL----------S-ELGYLDKRIYHATSNGNL 384 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhCchhhh----------h-hhccccchheeeeecccc
Confidence 999999999999999999977654221 1 011235567788888754
No 204
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.00 E-value=0.016 Score=65.84 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=69.5
Q ss_pred cccceeeE----EEEEEeeee------eccCCCceEEEecCc-----ceEEeeeehhhhhhHhhccccchhhhhchhhhH
Q 007303 48 NEEDFAGI----ALLTLISAE------MKFKDKWLACVSLGE-----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFML 112 (608)
Q Consensus 48 ~~~~~~~~----~~~~~~~a~------~~~~d~~~~~~~~~~-----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~ 112 (608)
+.|-+.|+ +.|.|++|+ -+-..|++++--.|. +...|.|+.
T Consensus 1055 n~e~~~~l~p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~d------------------------ 1110 (1267)
T KOG1264|consen 1055 NPESQRGLLPMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVND------------------------ 1110 (1267)
T ss_pred ChHHhccccceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEecc------------------------
Confidence 34455564 467888888 266779999866654 445667777
Q ss_pred HHHHHHhhhhhcccCCCCCccc-cccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 113 TLFSFLFVISFFWCSTDKPIWN-SEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 113 ~~~~~~~~~~~~~~~tlnP~wn-e~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+.+||+|| +.++|-+..+.---++|.|+|.|-++.-.++|.+..++..+
T Consensus 1111 --------------NGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1111 --------------NGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred --------------CCCCCCCCCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhh
Confidence 99999999 77777776665556999999999999999999999888875
No 205
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.96 E-value=0.0032 Score=56.21 Aligned_cols=59 Identities=25% Similarity=0.374 Sum_probs=43.1
Q ss_pred HHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHH
Q 007303 217 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAA 277 (608)
Q Consensus 217 ~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~ 277 (608)
..+.-.|..+|.|+||.|+..|+..+...+ ...+.-++.+|+..|.|+||.||..|+..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 347889999999999999999998876544 23334578899999999999999999875
No 206
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.87 E-value=0.0093 Score=50.87 Aligned_cols=63 Identities=24% Similarity=0.381 Sum_probs=41.6
Q ss_pred hhhhhc-cCCCCCc-hh-hHHHHhhcCCCCC----hhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDL-LDPSSSN-KI-VGKISLSCSVEDP----IETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~-~D~d~dG-kI-l~ell~~l~~~~~----~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
..+|.. .|.++++ +| ..++...+...-| ...+...+.++++.+|.|+||.|+|+||..++..+
T Consensus 12 ~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 12 IAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567888 6677765 77 3333222221111 11122338999999999999999999999988764
No 207
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.85 E-value=0.016 Score=69.29 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=66.0
Q ss_pred hhhhhccCCCCCchh----hHHHHhhcCCCCChhhh---HHHHHHHhcccccCCCCcccHHHHHHHHHHh--cCcccHHH
Q 007303 184 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETE---KSFARRILSIVDYNQDGQLSFKEFSDLISAF--GNQVAANK 254 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e---~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l--g~~~~~ee 254 (608)
.-+|+.||.+++|.+ ++.+++.+++.-|..++ .+.+++++..+|++.+|+|+..|+..+|..- -.-.+.++
T Consensus 2256 s~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~e 2335 (2399)
T KOG0040|consen 2256 SMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEE 2335 (2399)
T ss_pred HHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHH
Confidence 457778888888877 66677777765444322 2347778888888888888888888877652 22345567
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 255 KEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 255 l~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
++.+|+..|. +.-+++.+|+.+-|
T Consensus 2336 IE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2336 IEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred HHHHHHHhhc-CCccccHHHHHhcC
Confidence 8888888887 66777877775544
No 208
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=95.71 E-value=0.028 Score=49.24 Aligned_cols=49 Identities=16% Similarity=0.364 Sum_probs=37.8
Q ss_pred ccCCCceEEEecCc-ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeeccC
Q 007303 66 KFKDKWLACVSLGE-QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLETN 144 (608)
Q Consensus 66 ~~~d~~~~~~~~~~-~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~ 144 (608)
+..|||+.+ +.++ ...||+..+ ||.|||.|.+.++.
T Consensus 21 ~~~etyV~I-Kved~~kaRTr~sr-----------------------------------------nd~WnE~F~i~Vdk- 57 (109)
T cd08689 21 KRPETYVSI-KVEDVERARTKPSR-----------------------------------------NDRWNEDFEIPVEK- 57 (109)
T ss_pred cCCCcEEEE-EECCEEEEeccCCC-----------------------------------------CCcccceEEEEecC-
Confidence 556888776 5555 488988766 89999988888853
Q ss_pred CCcceeeEEeeccc
Q 007303 145 GPHVARISVFETNR 158 (608)
Q Consensus 145 ~~~~l~~~v~D~D~ 158 (608)
...+.+.+||...
T Consensus 58 -~nEiel~VyDk~~ 70 (109)
T cd08689 58 -NNEEEVIVYDKGG 70 (109)
T ss_pred -CcEEEEEEEeCCC
Confidence 5788999998866
No 209
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.0068 Score=64.61 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=46.7
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHh------cC--------ccc-HHHHHHH--HHHhcCCCCcccCHHHHHHHHHh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAF------GN--------QVA-ANKKEEL--FKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~l------g~--------~~~-~eel~~~--F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
.+-+|++||.||||.|+.+||..+..-. +. ..+ .-++... -..|.++++++++++||.+++++
T Consensus 235 F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~ 314 (489)
T KOG2643|consen 235 FRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQEN 314 (489)
T ss_pred ceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHH
Confidence 5779999999999999999998876432 11 000 0122222 23468999999999999999988
Q ss_pred hcc
Q 007303 282 QQE 284 (608)
Q Consensus 282 ~~e 284 (608)
+.+
T Consensus 315 Lq~ 317 (489)
T KOG2643|consen 315 LQE 317 (489)
T ss_pred HHH
Confidence 743
No 210
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=95.58 E-value=0.016 Score=65.13 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=62.3
Q ss_pred EEEEEeeee-------eccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCC
Q 007303 56 ALLTLISAE-------MKFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCST 128 (608)
Q Consensus 56 ~~~~~~~a~-------~~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~t 128 (608)
+.+.+..|+ .|.+|||+.+-.-.+..+||.++. .+
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~--------------------------------------ks 48 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE--------------------------------------KS 48 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh--------------------------------------hh
Confidence 456666666 589999976655567889999999 99
Q ss_pred CCCccccccceeeccCCC-cceeeEEeeccccccCCcCcceeeecccc
Q 007303 129 DKPIWNSEKKLLLETNGP-HVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 129 lnP~wne~~~~~ve~~~~-~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+-|-|.| .+.++-+-. +.+.|-|||.| ++.+|.||...|.-+++
T Consensus 49 L~PF~gE--e~~~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l 93 (800)
T KOG2059|consen 49 LCPFFGE--EFYFEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDL 93 (800)
T ss_pred cCCcccc--ceEEecCcceeeEEEEEeccc-cccccccceeeeeHHHH
Confidence 9999999 445554432 45899999999 99999999888877775
No 211
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.58 E-value=0.014 Score=49.63 Aligned_cols=63 Identities=25% Similarity=0.291 Sum_probs=42.5
Q ss_pred hhhhhccCCC--CCchh----hHHHHhhcCCCCCh-hhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLDPS--SSNKI----VGKISLSCSVEDPI-ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 184 ~eiF~~~D~d--~dGkI----l~ell~~l~~~~~~-~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
..+|..++.+ ++|+| +..++.......++ ......+..+|+.+|.|++|.|+|+||..++..+
T Consensus 11 ~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 11 INVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4578888865 36778 55555422111222 0112238999999999999999999999988764
No 212
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.18 E-value=0.022 Score=35.97 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHHH
Q 007303 255 KEELFKAADKNGDGVVSVDELAALLA 280 (608)
Q Consensus 255 l~~~F~~~D~d~dG~Is~eEf~~~l~ 280 (608)
++.+|+.+|.+++|.|+++||..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45566666666666666666666554
No 213
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=95.05 E-value=0.044 Score=52.83 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=68.4
Q ss_pred cccCcchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh--cC
Q 007303 176 LTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF--GN 248 (608)
Q Consensus 176 Ls~ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l--g~ 248 (608)
++..++.. ..+|+.+|.+.||+| ++.++..++. +.+..- ++.+++.+|.|.||+|||.||.-+.... |+
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga-pQTHL~---lK~mikeVded~dgklSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGA-PQTHLG---LKNMIKEVDEDFDGKLSFREFLLIFRKAAAGE 168 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCC-chhhHH---HHHHHHHhhcccccchhHHHHHHHHHHHhccc
Confidence 55556666 789999999999999 5556666642 333344 8999999999999999999999887752 33
Q ss_pred cccHHHHHHH--HHHhcCCCCcccCHHHHHH
Q 007303 249 QVAANKKEEL--FKAADKNGDGVVSVDELAA 277 (608)
Q Consensus 249 ~~~~eel~~~--F~~~D~d~dG~Is~eEf~~ 277 (608)
-..+..+..+ ....|....|..-...|-+
T Consensus 169 L~~ds~~~~LAr~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 169 LQEDSGLLRLARLSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred cccchHHHHHHHhcccchhhhhhhhHHHHHH
Confidence 2233333333 3346777777766666544
No 214
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.057 Score=47.49 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=45.2
Q ss_pred HHHhcccccCCCCcccHHHHHHHHHHhcC----------cccHHHHHHHHHH----hcCCCCcccCHHHHHHH
Q 007303 220 RRILSIVDYNQDGQLSFKEFSDLISAFGN----------QVAANKKEELFKA----ADKNGDGVVSVDELAAL 278 (608)
Q Consensus 220 ~~~f~~~D~d~dG~Is~eEf~~~l~~lg~----------~~~~eel~~~F~~----~D~d~dG~Is~eEf~~~ 278 (608)
--.|++.|.|++|.|+=-|+..++...-. -.++.++..++.. -|.|+||+|+|.||.+.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 35899999999999999999998875311 1345566665554 48899999999999763
No 215
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=94.80 E-value=0.068 Score=57.13 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=64.6
Q ss_pred hhhhhccCCCCCchh-hHHHHhh---cCCCCChhhhHHHHHHH-hcccccCCCCcccHHHHHHHHHHhc------Ccc--
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLS---CSVEDPIETEKSFARRI-LSIVDYNQDGQLSFKEFSDLISAFG------NQV-- 250 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~---l~~~~~~~~e~~~l~~~-f~~~D~d~dG~Is~eEf~~~l~~lg------~~~-- 250 (608)
...|+.+|+++.|+| +..+... +..-.. . |+.+ =+....+.||.+.|.+-.+.+..-+ ..+
T Consensus 467 ~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~L--P----Wr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 467 EDEFRKYDPKKSGKLSISHWAKCMENITGLNL--P----WRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred HHHHHhcChhhcCeeeHHHHHHHHHHHhcCCC--c----HHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 456788888888887 3333221 111011 1 2211 1233445567777776666554311 000
Q ss_pred ----cHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCc-ccCCchhHHHhHhhhcccCcc
Q 007303 251 ----AANKKEELFKAADKNGDGVVSVDELAALLALQQEKEP-LMNCCPVCGETLEVADMVNTM 308 (608)
Q Consensus 251 ----~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~-~~~~~~~~~~~l~~~D~~~di 308 (608)
-...++.+|+.+|.|++|.||.+||+.+++-.....+ .+.. ..+.+..+.+|-++|.
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~-~~i~~la~~mD~NkDG 602 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISD-DEILELARSMDLNKDG 602 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCH-HHHHHHHHhhccCCCC
Confidence 0124678999999999999999999998876654332 1111 1233444445555443
No 216
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=94.55 E-value=0.038 Score=48.54 Aligned_cols=62 Identities=23% Similarity=0.445 Sum_probs=43.7
Q ss_pred ccCcchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 177 TKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 177 s~ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
++++... ..+|+.+|+ .+|.| ...++... ...... +.++|...|.|++|+++++||.-+|.-
T Consensus 5 s~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~---L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 5 SPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS---GLPRDV---LAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT---TSSHHH---HHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHH---HHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 3444444 789999886 57888 33344332 333344 899999999999999999999988764
No 217
>PLN02352 phospholipase D epsilon
Probab=94.47 E-value=0.07 Score=61.73 Aligned_cols=96 Identities=17% Similarity=0.202 Sum_probs=68.6
Q ss_pred eeeEEEEEEeeee---ec---------cCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHh
Q 007303 52 FAGIALLTLISAE---MK---------FKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLF 119 (608)
Q Consensus 52 ~~~~~~~~~~~a~---~~---------~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (608)
+-|.+.+|+..|+ .. .+|||+.+...+..+-|| +
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~------------------------------- 53 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---S------------------------------- 53 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---C-------------------------------
Confidence 3478888888886 11 227887765555666777 5
Q ss_pred hhhhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccccccCcchhhhhhhccCCCC
Q 007303 120 VISFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDADSEVFDLLDPSS 194 (608)
Q Consensus 120 ~~~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~~eiF~~~D~d~ 194 (608)
+.-||.|+|+|.+++...-+..+.|+|-| .-.+||.+.++.+++++.++. -..+|..++.++
T Consensus 54 -------~~~~p~w~e~f~i~~ah~~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~-~~~~~~~~~~~~ 115 (758)
T PLN02352 54 -------HEYDRVWNQTFQILCAHPLDSTITITLKT-----KCSILGRFHIQAHQIVTEASF-INGFFPLIMENG 115 (758)
T ss_pred -------CCCCCccccceeEEeeeecCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcc-cceEEEcccCCC
Confidence 66799999988888866643468899987 257899999999998876441 134666666553
No 218
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=93.92 E-value=0.047 Score=63.57 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=69.4
Q ss_pred ceeeEEEEEEeeee-------eccCCCceEEEecCcce--EEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 51 DFAGIALLTLISAE-------MKFKDKWLACVSLGEQT--CRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 51 ~~~~~~~~~~~~a~-------~~~~d~~~~~~~~~~~~--~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
-+.-.+++.+..|. .|..|||+.+ .+|.+. =++.-+.
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l-~lGk~~~~d~~~yip--------------------------------- 655 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKL-LLGKKRTLDRAHYIP--------------------------------- 655 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeee-eeccchhhhhhhcCc---------------------------------
Confidence 34567888888887 4899999876 566655 3445666
Q ss_pred hhcccCCCCCccccccceeeccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
+|+||++.+.|.+...-..+..+.+.+||+|..+.+|.+|+..++++.-
T Consensus 656 -----~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 656 -----NTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENR 704 (1105)
T ss_pred -----CCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhc
Confidence 9999999997777666667788999999999999999999999999875
No 219
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.77 E-value=0.25 Score=59.78 Aligned_cols=65 Identities=22% Similarity=0.408 Sum_probs=57.4
Q ss_pred HHHHHhcccccCCCCcccHHHHHHHHHHhcCccc--HH-----HHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 218 FARRILSIVDYNQDGQLSFKEFSDLISAFGNQVA--AN-----KKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 218 ~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~--~e-----el~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
....+|+.||.+.+|.+++.+|..-|.++|-.+| ++ ++++++...|++.+|+|+..|+.++|-..
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 4677999999999999999999999999876653 23 79999999999999999999999998654
No 220
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=93.61 E-value=0.073 Score=33.40 Aligned_cols=27 Identities=33% Similarity=0.724 Sum_probs=24.4
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
++.+|+.+|.+++|.|++.||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 678999999999999999999998764
No 221
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.90 E-value=0.48 Score=51.58 Aligned_cols=59 Identities=31% Similarity=0.477 Sum_probs=35.4
Q ss_pred HhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 222 ILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 222 ~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+=...|.-+||.|||+||+..-.-++ .++.....+|+.||+.++|.+|++++.+++.+.
T Consensus 79 la~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 79 LASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 33444666667777777765543333 234445666777777777777777776666554
No 222
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.98 E-value=0.18 Score=54.65 Aligned_cols=48 Identities=23% Similarity=0.345 Sum_probs=40.8
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
..+|..+|.+++|.| ..+++. ...+|+.+|.|+||.|+++||...+..
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 568999999999998 666531 467899999999999999999998865
No 223
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=91.94 E-value=0.28 Score=48.76 Aligned_cols=95 Identities=21% Similarity=0.287 Sum_probs=67.6
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcC-------CCCChhhh-HHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHH
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCS-------VEDPIETE-KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANK 254 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~-------~~~~~~~e-~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~ee 254 (608)
.++...+|.++|..+ ..+++...- ++...... +...++.=+.+|.|.||.++++|+..++..........+
T Consensus 239 keivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne 318 (362)
T KOG4251|consen 239 KEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNE 318 (362)
T ss_pred HHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHH
Confidence 456777888888776 444432211 11111111 122455556789999999999999999877777777788
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHH
Q 007303 255 KEELFKAADKNGDGVVSVDELAAL 278 (608)
Q Consensus 255 l~~~F~~~D~d~dG~Is~eEf~~~ 278 (608)
+..++...|.+++.+++.+|+.+-
T Consensus 319 ~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 319 VNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHhhhccCCCcccCHHHHHHH
Confidence 999999999999999999998753
No 224
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.86 E-value=0.35 Score=40.23 Aligned_cols=62 Identities=13% Similarity=0.304 Sum_probs=51.3
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHH-hcC-cccHHHHHHHHHHhcCC----CCcccCHHHHHHHHHh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISA-FGN-QVAANKKEELFKAADKN----GDGVVSVDELAALLAL 281 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~-lg~-~~~~eel~~~F~~~D~d----~dG~Is~eEf~~~l~~ 281 (608)
++.+|+.+-. +.+.|+.++|...|.. .+. ..+.++++.++..+..+ ..+.+|+++|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 7788998855 7899999999999987 444 46789999999998655 4799999999999954
No 225
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=90.52 E-value=0.46 Score=40.60 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=27.0
Q ss_pred HHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 217 SFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 217 ~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
..+.++|+..|.|+||.|+|+||..++..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 348999999999999999999999998764
No 226
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=90.46 E-value=0.57 Score=50.99 Aligned_cols=47 Identities=21% Similarity=0.479 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 232 GQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 232 G~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
-.++|.||.+++.. ...|..++.|+..|+.++|.||.-+|...+-..
T Consensus 162 r~~ny~~f~Q~lh~----~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~ 208 (694)
T KOG0751|consen 162 RHLNYAEFTQFLHE----FQLEHAEQAFREKDKAKNGFISVLDFQDIMVTI 208 (694)
T ss_pred HhccHHHHHHHHHH----HHHHHHHHHHHHhcccCCCeeeeechHhhhhhh
Confidence 44555555555533 234456778888888888888888887776554
No 227
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=89.78 E-value=0.54 Score=48.74 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=55.6
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHh-cCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAF-GNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~l-g~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
+..+|..||.+++|.+++.|....+.-+ +...+.+.++-+|+.|+.+.||.+.-.+|--+++.
T Consensus 261 l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 261 LAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 7899999999999999999999888764 56678889999999999999999999888776644
No 228
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.86 E-value=1.5 Score=41.85 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 250 VAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 250 ~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
..+++.+++|..+++.+.+.||..|+.++++..
T Consensus 93 Fvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred CCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 345678999999999888999999999998653
No 229
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=87.96 E-value=0.32 Score=50.35 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=53.7
Q ss_pred HHHHHhcccccCCCCcccHHHHHHHHHHhc-CcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcccC
Q 007303 218 FARRILSIVDYNQDGQLSFKEFSDLISAFG-NQVAANKKEELFKAADKNGDGVVSVDELAALLALQQEKE 286 (608)
Q Consensus 218 ~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg-~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~ 286 (608)
.+...|..+|.|.++.|+..|+..+-.-+. ..-...-.+.+|+..|.|+|-+||++|+...|....+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~~ 403 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKERG 403 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccccC
Confidence 467789999999999999998766544332 223345578899999999999999999999986655543
No 230
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.30 E-value=1.2 Score=48.41 Aligned_cols=68 Identities=13% Similarity=0.301 Sum_probs=56.8
Q ss_pred hhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 212 IETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 212 ~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
+.+.+++.-.-|+.+..|-+|+|+=.--..++.. .+++-+|+..+|+..|.|.||.|+++||+..+.-
T Consensus 226 T~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 226 TPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred CHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3444556677889999999999998877776643 5688899999999999999999999999998864
No 231
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=87.12 E-value=1.3 Score=46.40 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=51.3
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
+..||..+|.|.||.++..|+..+-.. --+.-++.+|...|...||.|+-.|+...+...
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 889999999999999999999876421 233458999999999999999999999999553
No 232
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=85.90 E-value=0.61 Score=41.58 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=32.4
Q ss_pred hhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHH
Q 007303 185 EVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSD 241 (608)
Q Consensus 185 eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~ 241 (608)
=.|..+|.++||.+ +..+...+ .+.+.- ++..++..|.|+||.||..|+..
T Consensus 58 W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C---~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 58 WKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHC---ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHH--T-SSEE-TTTTGGGGSTT---STTGGG---HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHH---HHHHHHHcCCCCCCCCCHHHHcc
Confidence 35899999999998 33332222 233333 68899999999999999999863
No 233
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=85.83 E-value=1.3 Score=50.38 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=68.9
Q ss_pred cccccccceeeEEEEEEeeee---------------------eccCCCceEEEecCc---ceEEeeeehhhhhhHhhccc
Q 007303 44 NRVLNEEDFAGIALLTLISAE---------------------MKFKDKWLACVSLGE---QTCRTAISDKLRTFARLQNS 99 (608)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~a~---------------------~~~~d~~~~~~~~~~---~~~~t~v~~~l~~~~~~~~~ 99 (608)
+.+=..+|+.|-+.|.|.--+ .+-.|||..+...|. +.-+|++.+
T Consensus 106 ~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~k----------- 174 (800)
T KOG2059|consen 106 QPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKK----------- 174 (800)
T ss_pred cccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeecccchhhccccceee-----------
Confidence 344456788897776664322 255888877764443 347899999
Q ss_pred cchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceeeccC---------------CCcceeeEEee-ccccccCC
Q 007303 100 HFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLLETN---------------GPHVARISVFE-TNRLSKSN 163 (608)
Q Consensus 100 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ve~~---------------~~~~l~~~v~D-~D~~s~~D 163 (608)
.|.||.|+|.+.+.+... ....+++++|+ |+...+++
T Consensus 175 ---------------------------kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 175 ---------------------------KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred ---------------------------eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 999999999776665222 23568899998 77788899
Q ss_pred cCcceeeeccccc
Q 007303 164 LEGYCEVDLLEFL 176 (608)
Q Consensus 164 ~iG~~~i~l~elL 176 (608)
+.|+..+++..+.
T Consensus 228 FlGevrv~v~~~~ 240 (800)
T KOG2059|consen 228 FLGEVRVPVDVLR 240 (800)
T ss_pred hceeEEeehhhhh
Confidence 9999999998854
No 234
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=85.78 E-value=1.4 Score=33.33 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=29.3
Q ss_pred HHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 200 GKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 200 ~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
+.+++.+.. ...+ ..+..+|+..|.+++|.++.+||......+
T Consensus 8 k~lLk~~NI-~~~~---~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 8 KKLLKMMNI-EMDD---EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHTT-----H---HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHcc-CcCH---HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 345555533 2223 338899999999999999999999887653
No 235
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=85.14 E-value=0.45 Score=54.00 Aligned_cols=49 Identities=16% Similarity=0.359 Sum_probs=40.7
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeecccc---------------------------------cc---CCcCcceee
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETNRL---------------------------------SK---SNLEGYCEV 170 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D~~---------------------------------s~---~D~iG~~~i 170 (608)
+|+||+|+|.|.|.+++-......+.+||+|.- |. +|++|...+
T Consensus 186 ~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNi 265 (1103)
T KOG1328|consen 186 KTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINI 265 (1103)
T ss_pred ccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 899999999888888877777889999998742 12 788998888
Q ss_pred ecccc
Q 007303 171 DLLEF 175 (608)
Q Consensus 171 ~l~el 175 (608)
++.|+
T Consensus 266 pl~Ei 270 (1103)
T KOG1328|consen 266 PLAEI 270 (1103)
T ss_pred chhcC
Confidence 88886
No 236
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=83.36 E-value=2.6 Score=48.56 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=63.3
Q ss_pred hhhhhccCCCCCchh-hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHh
Q 007303 184 SEVFDLLDPSSSNKI-VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAA 262 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI-l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~ 262 (608)
..+|...|++++|.+ +.+....+...++.-.+ ..++.+|+..|.-+++.+..+++......+.... ++..+|..+
T Consensus 139 ~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~-~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~ 214 (746)
T KOG0169|consen 139 HSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSE-SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQY 214 (746)
T ss_pred HHHHHHHccccccccchhhHHHHHHHHHHhhhH-HHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHH
Confidence 457788888888877 43333333221222222 2367777777777888888888888776654332 777778777
Q ss_pred cCCCCcccCHHHHHHHHHhhc
Q 007303 263 DKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 263 D~d~dG~Is~eEf~~~l~~~~ 283 (608)
-.+ .+.++.+++..++....
T Consensus 215 s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 215 SHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred hCC-CCccCHHHHHHHHHHhc
Confidence 554 78888888888887763
No 237
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=0.36 Score=50.15 Aligned_cols=82 Identities=21% Similarity=0.223 Sum_probs=59.6
Q ss_pred EEEEEEeeee-------eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhh
Q 007303 55 IALLTLISAE-------MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISF 123 (608)
Q Consensus 55 ~~~~~~~~a~-------~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 123 (608)
.+..||..|+ .+..|||.+...++- ..+||++..
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~----------------------------------- 138 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR----------------------------------- 138 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-----------------------------------
Confidence 4455666666 288999988754432 348888888
Q ss_pred cccCCCCCccccccceeec--cC-CCcceeeEEeeccccccCCcCcceeeeccc
Q 007303 124 FWCSTDKPIWNSEKKLLLE--TN-GPHVARISVFETNRLSKSNLEGYCEVDLLE 174 (608)
Q Consensus 124 ~~~~tlnP~wne~~~~~ve--~~-~~~~l~~~v~D~D~~s~~D~iG~~~i~l~e 174 (608)
+++||.|++....... .+ ....++..+-|.+.+..++++|+..+.+..
T Consensus 139 ---n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkK 189 (362)
T KOG1013|consen 139 ---NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKK 189 (362)
T ss_pred ---cCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhc
Confidence 9999999984433322 22 446688889999999999999987777776
No 238
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=82.90 E-value=2.4 Score=40.60 Aligned_cols=52 Identities=15% Similarity=0.374 Sum_probs=34.8
Q ss_pred ceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEE
Q 007303 475 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 549 (608)
Q Consensus 475 ~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~ 549 (608)
..+.||++|++....++.+. -.|+...|-=+++ -|.+ +..+||++|+|..+.
T Consensus 21 ~~i~aP~~G~vi~L~~V~D~-------------------vFs~k~mGdGvAI---~P~~-~~v~AP~dG~V~~vf 72 (169)
T PRK09439 21 IEIIAPLSGEIVNIEDVPDV-------------------VFAEKIVGDGIAI---KPTG-NKMVAPVDGTIGKIF 72 (169)
T ss_pred eEEEecCCeEEEEhHHCCCh-------------------HhcccCccceEEE---EccC-CEEEecCCeEEEEEc
Confidence 45889999999998877642 2222222212333 3666 789999999997654
No 239
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=81.78 E-value=2.6 Score=45.87 Aligned_cols=90 Identities=10% Similarity=0.214 Sum_probs=61.3
Q ss_pred hhhhhc----cCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh-------c-
Q 007303 184 SEVFDL----LDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF-------G- 247 (608)
Q Consensus 184 ~eiF~~----~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l-------g- 247 (608)
.++|.. .-...+|++ +-.++.++.. .-+... ++-.|+.+|.+++|.|+..|+....... +
T Consensus 314 dRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k~t~~S---leYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~ 389 (493)
T KOG2562|consen 314 DRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-KDTPAS---LEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQ 389 (493)
T ss_pred HHHHhhccccceeeecCcccHHHHHHHHHHhcc-CCCccc---hhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCC
Confidence 567772 234467777 3334445433 222333 6778999999999999999998766542 2
Q ss_pred Cccc-HHHHHHHHHHhcCCCCcccCHHHHHH
Q 007303 248 NQVA-ANKKEELFKAADKNGDGVVSVDELAA 277 (608)
Q Consensus 248 ~~~~-~eel~~~F~~~D~d~dG~Is~eEf~~ 277 (608)
+.++ ++-+.+++........++||..+|+.
T Consensus 390 e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 390 EALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 1222 34467888888888899999999987
No 240
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=79.23 E-value=2.6 Score=46.55 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=48.6
Q ss_pred cccCcchh-hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHHh
Q 007303 176 LTKDSDAD-SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISAF 246 (608)
Q Consensus 176 Ls~ee~~~-~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~l 246 (608)
+++++... .+-|..+| +++|++ +..++...+... ....++++++++...+.|.+|.|+|+||..++-.+
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 34444444 67899999 999998 444554443212 22223348999999999999999999999977654
No 241
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.20 E-value=2 Score=49.32 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=53.1
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLA 280 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~ 280 (608)
.+++|+..|+...|+++-..-+.+|.. ..++...+..++...|.|+||+|+.+||+-.|.
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 689999999999999999988888854 558888999999999999999999999976543
No 242
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=77.26 E-value=2 Score=51.62 Aligned_cols=82 Identities=20% Similarity=0.292 Sum_probs=63.8
Q ss_pred eEEEEEEeeee-----e--ccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 54 GIALLTLISAE-----M--KFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 54 ~~~~~~~~~a~-----~--~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
|.+.|-|..|+ + .--|||+++|.+++ ..-||+|++
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr---------------------------------- 1569 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR---------------------------------- 1569 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc----------------------------------
Confidence 55555555555 1 34689999998876 346899999
Q ss_pred hcccCCCCCccccccceee-----ccCCCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 123 FFWCSTDKPIWNSEKKLLL-----ETNGPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~v-----e~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
.|-||++|| .+.. +.-..+.+.++||-.+.+..+-++|...+++.++
T Consensus 1570 ----kt~~PTfnE--~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1570 ----KTRNPTFNE--MLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred ----ccCCCchhh--heeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhc
Confidence 999999999 3333 2235578999999999999999999999999886
No 243
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=76.82 E-value=3.6 Score=37.34 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=32.9
Q ss_pred eeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEE
Q 007303 477 AVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVD 550 (608)
Q Consensus 477 ~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~ 550 (608)
+.||++|++....++.+. -.++...|--+++ -|.+ +...||++|+|..+..
T Consensus 1 i~aPv~G~~~~l~~v~D~-------------------vFs~~~lG~GvaI---~P~~-~~v~AP~~G~v~~i~~ 51 (124)
T cd00210 1 LASPITGEIVPLDQVPDE-------------------VFASKMMGDGFAI---KPSD-GKVVAPVDGTIVQIFP 51 (124)
T ss_pred CccccceEEEEhhhCcCh-------------------HhcccCccceEEE---EccC-CeEECcCCeEEEEEcc
Confidence 468999999998877632 2222222222333 3555 6889999999976653
No 244
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.81 E-value=3.6 Score=36.49 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=42.1
Q ss_pred eeecccccccCcchhhhhhhccCCCCCchh-----hHHHHh-----hcCCCC-C--hhhh-HHHHHHHhcccccCCCCcc
Q 007303 169 EVDLLEFLTKDSDADSEVFDLLDPSSSNKI-----VGKISL-----SCSVED-P--IETE-KSFARRILSIVDYNQDGQL 234 (608)
Q Consensus 169 ~i~l~elLs~ee~~~~eiF~~~D~d~dGkI-----l~ell~-----~l~~~~-~--~~~e-~~~l~~~f~~~D~d~dG~I 234 (608)
.++...-|++++..- -.|+..|-++++++ ++.+.. ..+..+ | ++.+ ...+..+++.-|.|+||.|
T Consensus 56 ki~~~a~mtpeqlqf-HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~I 134 (144)
T KOG4065|consen 56 KIEKVAKMTPEQLQF-HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVI 134 (144)
T ss_pred ccchhhhCCHHHHhh-hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCcee
Confidence 455433355444332 35788888898887 222221 111111 2 1222 2345667777799999999
Q ss_pred cHHHHHHH
Q 007303 235 SFKEFSDL 242 (608)
Q Consensus 235 s~eEf~~~ 242 (608)
+|.||...
T Consensus 135 DYgEflK~ 142 (144)
T KOG4065|consen 135 DYGEFLKR 142 (144)
T ss_pred eHHHHHhh
Confidence 99999864
No 245
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.19 E-value=5.2 Score=41.87 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=50.5
Q ss_pred eccCCCceEEEecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCcccccccee
Q 007303 65 MKFKDKWLACVSLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLL 140 (608)
Q Consensus 65 ~~~~d~~~~~~~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~ 140 (608)
-+.+|||+......+ -.++|++.| +|+||++++++.+.
T Consensus 251 ng~sDpyvS~~l~pdv~~~fkkKt~~~K--------------------------------------~t~~p~fd~~~~~~ 292 (362)
T KOG1013|consen 251 NGYSDPYVSQRLSPDVGKKFKKKTQQKK--------------------------------------KTLNPEFDEEFFYD 292 (362)
T ss_pred CCCCCccceeecCCCcchhhcccCcchh--------------------------------------ccCCcccccccccc
Confidence 499999988764433 348899999 99999999966655
Q ss_pred ec-cC-CCcceeeEEeeccccccCCcCcce
Q 007303 141 LE-TN-GPHVARISVFETNRLSKSNLEGYC 168 (608)
Q Consensus 141 ve-~~-~~~~l~~~v~D~D~~s~~D~iG~~ 168 (608)
.. .+ ....+.++++|++.-...|.+|-.
T Consensus 293 i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~ 322 (362)
T KOG1013|consen 293 IGPGDLAYKKVALSVGDYDIGKSNDSIGGS 322 (362)
T ss_pred CCccchhcceEEEeecccCCCcCccCCCcc
Confidence 52 22 335688999999998899998843
No 246
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=73.96 E-value=3.3 Score=46.92 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=45.6
Q ss_pred HHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHH
Q 007303 217 SFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDEL 275 (608)
Q Consensus 217 ~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf 275 (608)
.+++++|...|.+++|.|+|.++...+..+......+.++-+|+.+|.+++ ....+|.
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 456778888888888888888888888777666666778888888888888 7777776
No 247
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=73.84 E-value=2.4 Score=50.10 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=46.9
Q ss_pred ccCCCceEEEecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhcccCCCCCccccccceee----
Q 007303 66 KFKDKWLACVSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFFWCSTDKPIWNSEKKLLL---- 141 (608)
Q Consensus 66 ~~~d~~~~~~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~tlnP~wne~~~~~v---- 141 (608)
.++||+..+ ..=.+...|.++. .|+||.|+....+.-
T Consensus 225 ~~sdp~a~v-~f~~qs~~T~~v~--------------------------------------~tl~ptwdq~~~f~~~ei~ 265 (1105)
T KOG1326|consen 225 DESDPDAAV-EFCGQSKETEVVP--------------------------------------GTLNPTWDQTIIFDEVEIY 265 (1105)
T ss_pred cCCCchhhh-hcccccceeEeec--------------------------------------CcCCCCccceeeccceeec
Confidence 677777554 3334667888888 999999998332221
Q ss_pred cc-----CCCcceeeEEeeccccccCCcCcceeee
Q 007303 142 ET-----NGPHVARISVFETNRLSKSNLEGYCEVD 171 (608)
Q Consensus 142 e~-----~~~~~l~~~v~D~D~~s~~D~iG~~~i~ 171 (608)
.+ .....+.+++||.|+.+.+|++|.+...
T Consensus 266 ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~ 300 (1105)
T KOG1326|consen 266 GEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQR 300 (1105)
T ss_pred CccchhhcCCCeEEEEeehhhhhchHHhhcccccc
Confidence 01 1224577999999999999999987543
No 248
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=70.37 E-value=6.3 Score=35.59 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=31.9
Q ss_pred eeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEE
Q 007303 477 AVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 549 (608)
Q Consensus 477 ~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~ 549 (608)
+.||++|++....++.+. -.++...|--+++. |.+ ....||++|+|..+.
T Consensus 1 i~aP~~G~~i~l~~v~D~-------------------vFs~~~~G~G~aI~---P~~-~~v~AP~~G~v~~v~ 50 (121)
T TIGR00830 1 IVSPISGEIVPLDQVPDE-------------------VFAEKIVGDGFAIL---PTD-GKVVAPVDGKIGKIF 50 (121)
T ss_pred CccccCceEEEhhhCCCh-------------------HhcccCccceEEEE---cCC-CeEEccCCeEEEEEc
Confidence 468999999988777632 22222222223333 555 678899999997654
No 249
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=70.02 E-value=10 Score=42.72 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCcccCHHHHHHHHHhhcc
Q 007303 255 KEELFKAADKNGDGVVSVDELAALLALQQE 284 (608)
Q Consensus 255 l~~~F~~~D~d~dG~Is~eEf~~~l~~~~e 284 (608)
+..+|..+|.|+||.++-+||..++...|.
T Consensus 317 l~~~f~~~D~d~Dg~L~p~El~~LF~~~P~ 346 (625)
T KOG1707|consen 317 LVDVFEKFDRDNDGALSPEELKDLFSTAPG 346 (625)
T ss_pred HHHHHHhccCCCCCCcCHHHHHHHhhhCCC
Confidence 457788889999999999998888866544
No 250
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=69.50 E-value=9.3 Score=39.57 Aligned_cols=61 Identities=23% Similarity=0.394 Sum_probs=44.3
Q ss_pred HHHhcccccCCCCcccHHHHHHHHHH-h----cCcccHHHH-----------HHHHHHhcCCCCcccCHHHHHHHHH
Q 007303 220 RRILSIVDYNQDGQLSFKEFSDLISA-F----GNQVAANKK-----------EELFKAADKNGDGVVSVDELAALLA 280 (608)
Q Consensus 220 ~~~f~~~D~d~dG~Is~eEf~~~l~~-l----g~~~~~eel-----------~~~F~~~D~d~dG~Is~eEf~~~l~ 280 (608)
+-.|...|.|+||+++-.|+.+++.. + .....+++. +..++..|.|.|.-||.+||..--.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 56788999999999999999888764 1 222222222 2356678999999999999986543
No 251
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=67.36 E-value=6.3 Score=36.15 Aligned_cols=52 Identities=27% Similarity=0.546 Sum_probs=32.6
Q ss_pred ceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEE
Q 007303 475 EVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 549 (608)
Q Consensus 475 ~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~ 549 (608)
..+.||++|++....++.+. -|+ ..|||+ | +++. |.+ ....||++|+|..+.
T Consensus 3 ~~i~aPv~G~vi~l~~v~D~--------vFs-~~~lG~---------G-vaI~---p~~-~~v~AP~~G~v~~i~ 54 (132)
T PF00358_consen 3 ITIYAPVSGKVIPLEEVPDP--------VFS-QKMLGD---------G-VAII---PSD-GKVYAPVDGTVTMIF 54 (132)
T ss_dssp EEEE-SSSEEEEEGGGSSSH--------HHH-TTSSSE---------E-EEEE---ESS-SEEEESSSEEEEEE-
T ss_pred eEEEeeCCcEEEEhhhCCch--------HHC-CCCCcC---------E-EEEE---cCC-CeEEEEeeEEEEEEc
Confidence 46899999999998877642 122 234443 2 2222 444 578999999997654
No 252
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=64.68 E-value=12 Score=42.01 Aligned_cols=71 Identities=13% Similarity=0.197 Sum_probs=61.9
Q ss_pred hhhHHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhc
Q 007303 213 ETEKSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 213 ~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~ 283 (608)
.++-...+..|..+|.|+.|.++..+....|...+...+++.+++..+..|.+-+|++...||.+++....
T Consensus 589 ~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 589 PEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHh
Confidence 33434467789999999999999999999999988788999999999999999999999999999886653
No 253
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.43 E-value=6.7 Score=43.00 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=43.3
Q ss_pred hhhhhccCCCCCchh----hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
...|..+.+|-.|.| -++++.+- ...-.| +..+|++.|.|.||.+++.||+.++-.
T Consensus 234 vnQFrtvQpDp~gfisGsaAknFFtKS---klpi~E---LshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 234 VNQFRTVQPDPHGFISGSAAKNFFTKS---KLPIEE---LSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HhhhhcccCCcccccccHHHHhhhhhc---cCchHH---HHHHHhhcccCccccccHHHHHhhHhh
Confidence 567999999999998 33333332 233344 789999999999999999999998865
No 254
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=62.29 E-value=11 Score=45.79 Aligned_cols=60 Identities=12% Similarity=0.234 Sum_probs=51.1
Q ss_pred HHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 221 RILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 221 ~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
..|+.+|+||.|-|+..||..+|... ...++.+++.+..-+..|.+..++|+||..-+.+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 35788999999999999999999753 3567889999999999999999999999876543
No 255
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.01 E-value=26 Score=39.80 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=70.8
Q ss_pred EEEEEEeeee------eccCCCceEEEecCc------ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 55 IALLTLISAE------MKFKDKWLACVSLGE------QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 55 ~~~~~~~~a~------~~~~d~~~~~~~~~~------~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
-+++.+++|. -|.--||+++.-.|- ..+-|+.-.
T Consensus 1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKs---------------------------------- 1171 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKS---------------------------------- 1171 (1283)
T ss_pred eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccC----------------------------------
Confidence 5677788887 267779999875553 334555555
Q ss_pred hcccCCCCCccccccceeec---cCCCcceeeEEeeccccccCCcCcceeeecccccccCcchh-hhhhhccCCCCCchh
Q 007303 123 FFWCSTDKPIWNSEKKLLLE---TNGPHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDSDAD-SEVFDLLDPSSSNKI 198 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve---~~~~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee~~~-~eiF~~~D~d~dGkI 198 (608)
++-.|.+||.|.+.+. +++.+.+.+.|-|+=--..+-.+|-+.+.+.++.....-.. ..+-..+..|..|-+
T Consensus 1172 ----nnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihmDeTGLt 1247 (1283)
T KOG1011|consen 1172 ----NNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHMDETGLT 1247 (1283)
T ss_pred ----CCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccccccccccchh
Confidence 7778999999998883 34678899999887554455568988888888654433322 233344555556643
No 256
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=58.95 E-value=16 Score=43.07 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=55.8
Q ss_pred eeeEEEEEEeeeee---ccCCCceEEE--ecCc----ceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhh
Q 007303 52 FAGIALLTLISAEM---KFKDKWLACV--SLGE----QTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVIS 122 (608)
Q Consensus 52 ~~~~~~~~~~~a~~---~~~d~~~~~~--~~~~----~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 122 (608)
+|+-+.|+||++++ .+.--|+++- -++. ..+||+++.
T Consensus 701 IA~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~---------------------------------- 746 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQ---------------------------------- 746 (1189)
T ss_pred EEeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhcccc----------------------------------
Confidence 56788999999995 3344566653 3333 347777776
Q ss_pred hcccCCCCCccccccceeeccC---CCcceeeEEeeccccccCCcCcceeeecccc
Q 007303 123 FFWCSTDKPIWNSEKKLLLETN---GPHVARISVFETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 123 ~~~~~tlnP~wne~~~~~ve~~---~~~~l~~~v~D~D~~s~~D~iG~~~i~l~el 175 (608)
.+++||+|+| .-+++..- .--.+++.||+..+ .++|.-.+++..+
T Consensus 747 ---~n~~npvy~e-epfvF~KVvLpeLA~lRiavyeEgg----K~ig~RIlpvd~l 794 (1189)
T KOG1265|consen 747 ---GNSFNPVYEE-EPFVFRKVVLPELASLRIAVYEEGG----KFIGQRILPVDGL 794 (1189)
T ss_pred ---CCCCCccccc-CCcccceecccchhheeeeeeccCC----ceeeeeccchhcc
Confidence 3788999997 34555443 22458899998776 6777767777664
No 257
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=56.25 E-value=32 Score=32.34 Aligned_cols=61 Identities=11% Similarity=0.266 Sum_probs=44.5
Q ss_pred hcccccCCCCcccHHHHHHHHHH---hcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhc
Q 007303 223 LSIVDYNQDGQLSFKEFSDLISA---FGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 223 f~~~D~d~dG~Is~eEf~~~l~~---lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~ 283 (608)
|..|...+...++-..|..++.. ++..++..+++-+|..+-..+...|+|++|..+|..+.
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 33334555678999999999987 45568888999999998666667799999999997654
No 258
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=52.71 E-value=11 Score=38.15 Aligned_cols=37 Identities=24% Similarity=0.485 Sum_probs=26.2
Q ss_pred HHHHhccccCCCCccCCCCCCCceeeecCCceeeeeeecc
Q 007303 453 FNEFFIRELKPGARPIDCMEREEVAVCAADSRLMAFKSVE 492 (608)
Q Consensus 453 fn~FF~R~lk~~~Rpi~~~~~~~~~vsPaDg~~~~~~~i~ 492 (608)
|-.+|.|.+-|+ | -.|.|+.+++|||||++...+++.
T Consensus 63 ~l~~~~Rp~dp~-~--v~P~D~~i~~~pakG~~~sv~~ll 99 (239)
T COG0688 63 FLKYFFRPIDPE-R--VSPADGRIVVSPADGRVYSVEELL 99 (239)
T ss_pred HHhcccccCCCC-c--cCCCCCcEEEecCCCeEEEHHHhc
Confidence 345677766666 2 223467899999999999877654
No 259
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=47.98 E-value=30 Score=40.20 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=36.5
Q ss_pred CceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEE
Q 007303 474 EEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 549 (608)
Q Consensus 474 ~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~ 549 (608)
...+.||++|++....++.|. .|+ +.++|+ |. + .-|.| +..+||++|+|..+.
T Consensus 498 ~~~v~aP~~G~vi~l~~v~D~--------vFs-~~~~G~---------Gv-a---I~P~~-~~v~AP~~G~v~~v~ 550 (648)
T PRK10255 498 IAELVSPITGDVVALDQVPDE--------AFA-SKAVGD---------GV-A---VKPTD-KIVVSPAAGTIVKIF 550 (648)
T ss_pred ceEEEecCCcEEEEcccCcch--------hhh-cccccC---------cE-E---EeCCC-CeEEecCCeEEEEEc
Confidence 345899999999998887642 222 234443 22 2 23666 799999999998665
No 260
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=47.13 E-value=18 Score=40.65 Aligned_cols=51 Identities=18% Similarity=0.332 Sum_probs=38.3
Q ss_pred CCCCCccccccceeeccCCCcceeeEEeecc----ccccCCcCcceeeecccccc
Q 007303 127 STDKPIWNSEKKLLLETNGPHVARISVFETN----RLSKSNLEGYCEVDLLEFLT 177 (608)
Q Consensus 127 ~tlnP~wne~~~~~ve~~~~~~l~~~v~D~D----~~s~~D~iG~~~i~l~elLs 177 (608)
+.+||.|.+.+.+.......+.+++.++|-| ....+|++|..+..+.++.+
T Consensus 50 ~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 50 NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence 9999999884443333334467889999876 45789999999999988654
No 261
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=46.69 E-value=52 Score=31.59 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=44.0
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcc-------cHHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQV-------AANKKEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~-------~~eel~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
.+++|..++..+.+.+++.|+..++..-.... +.-|...++... +|.||.+..|+.+.+.
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 67889999988888999999999987632221 223444555444 6778999999998876
No 262
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.62 E-value=19 Score=41.85 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=42.5
Q ss_pred hhhhhccCCCCCchhhHH-HHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 184 SEVFDLLDPSSSNKIVGK-ISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 184 ~eiF~~~D~d~dGkIl~e-ll~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
.++|+.+|+...|++.+. .-..+......... +-.++..-|.|+||.++.+||.-+|..
T Consensus 198 ~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~---LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 198 RQLFNALDKTRSGYLSGQQARSALGQSGLPQNQ---LAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHhhhcccccccccccHHHHHHHHhcCCchhh---HhhheeeeccCCCCcccHHHHHHHHHH
Confidence 679999999999998222 11222222333444 788999999999999999999776543
No 263
>PLN02952 phosphoinositide phospholipase C
Probab=45.41 E-value=43 Score=38.54 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=41.9
Q ss_pred CCCcccHHHHHHHHHHhcC--cccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhcc
Q 007303 230 QDGQLSFKEFSDLISAFGN--QVAANKKEELFKAADKNGDGVVSVDELAALLALQQE 284 (608)
Q Consensus 230 ~dG~Is~eEf~~~l~~lg~--~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~e 284 (608)
+.|.++|+||......+.. ..+..+++.+|..+-.+ ++.+|.++|..+|.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 3589999999887776532 23678999999999644 368999999999987643
No 264
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=42.83 E-value=56 Score=39.02 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=53.7
Q ss_pred HHHHHHHhcccccCCCCcccHHHHHHHHHHhcCcccHH-----HHHHHHHHhcCCCCcccCHHHHHHHHHhhccc
Q 007303 216 KSFARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAAN-----KKEELFKAADKNGDGVVSVDELAALLALQQEK 285 (608)
Q Consensus 216 ~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~e-----el~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~ 285 (608)
...++..|+.+|....|.++.++|...+..+|.....+ ++..+....|.+.-|.+++.||...|.+-.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhh
Confidence 44588999999999999999999999999988765542 23334444566667999999999998775443
No 265
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=38.40 E-value=65 Score=26.42 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCcccCHHHHHHHHHhhcccCcccCCchhHHHhHhh
Q 007303 254 KKEELFKAADKNGDGVVSVDELAALLALQQEKEPLMNCCPVCGETLEV 301 (608)
Q Consensus 254 el~~~F~~~D~d~dG~Is~eEf~~~l~~~~e~~~~~~~~~~~~~~l~~ 301 (608)
+++.+|+.+-. +.+.||.++|..+|.+....... .-..|.+++.+
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~--~~~~~~~li~~ 45 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL--TDEQAKELIEK 45 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS--SHHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC--cHHHHHHHHHH
Confidence 57889999955 78999999999999765432111 11346666554
No 266
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=36.90 E-value=1.6e+02 Score=25.14 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=39.7
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHh-------cCc----ccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhhc
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAF-------GNQ----VAANKKEELFKAADKNGDGVVSVDELAALLALQQ 283 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~l-------g~~----~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~~ 283 (608)
.+-+|+.+ .|.+|.++..-|..+|... |+. ..+.-++..|+.. ..+-.|+.++|...+...|
T Consensus 5 yRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~eP 77 (90)
T PF09069_consen 5 YRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEP 77 (90)
T ss_dssp HHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--
T ss_pred HHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCC
Confidence 67788888 7889999999998887752 332 2455678888876 3556799999999997654
No 267
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=36.60 E-value=1.7e+02 Score=23.33 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=20.2
Q ss_pred CceeeecccCeEEeEEEEecCceec
Q 007303 533 DYHRFHLPVSGIIEQFVDIPGCLYT 557 (608)
Q Consensus 533 dYHR~h~P~~g~v~~~~~i~G~~~~ 557 (608)
-.+...+|++|+|.+...-+|..-.
T Consensus 38 ~~~~I~a~~~G~V~~i~v~~G~~V~ 62 (71)
T PRK05889 38 MEIPVLAEVAGTVSKVSVSVGDVIQ 62 (71)
T ss_pred ceeEEeCCCCEEEEEEEeCCCCEEC
Confidence 3567899999999999988887543
No 268
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=35.71 E-value=27 Score=36.68 Aligned_cols=54 Identities=28% Similarity=0.498 Sum_probs=39.6
Q ss_pred hhhccCCCCCchh-------hHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 186 VFDLLDPSSSNKI-------VGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 186 iF~~~D~d~dGkI-------l~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
-|..+|.++++.| |+.++.... .+. .=.+.+|+..|.|+|-.||+.|+..-|..
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~r----kC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKS--KPR----KCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhc--cHH----HHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4788999988887 444444321 121 12588999999999999999999987754
No 269
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=34.30 E-value=70 Score=30.21 Aligned_cols=52 Identities=21% Similarity=0.430 Sum_probs=33.8
Q ss_pred CceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEE
Q 007303 474 EEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQF 548 (608)
Q Consensus 474 ~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~ 548 (608)
...+.||..|++....+|.+. .| | +.|+|+- +++ -|.+ -..+||++|+|...
T Consensus 5 ~~~i~sP~~G~vv~Ls~VpD~-vF-------s-~k~mGdG----------iAI---~P~~-g~vvAPvdG~v~~i 56 (156)
T COG2190 5 KEEIYSPLSGEVVPLSDVPDP-VF-------S-EKMVGDG----------VAI---KPSE-GEVVAPVDGTVVLI 56 (156)
T ss_pred cEEEEccCCceEEEchhCCch-Hh-------h-cccccCc----------EEE---ecCC-CeEEeccCcEEEEE
Confidence 467899999999998877632 11 1 1345542 222 3555 56789999988644
No 270
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=34.17 E-value=36 Score=27.61 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 250 VAANKKEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 250 ~~~eel~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
.+.+++.+.|+.+ .++.++||-+||.+.|
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 4668899999999 7788999999999876
No 271
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=34.08 E-value=1.6e+02 Score=22.29 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.8
Q ss_pred ceeeecccCeEEeEEEEecCcee
Q 007303 534 YHRFHLPVSGIIEQFVDIPGCLY 556 (608)
Q Consensus 534 YHR~h~P~~g~v~~~~~i~G~~~ 556 (608)
....++|.+|+|.....-+|..-
T Consensus 36 ~~~i~ap~~G~v~~~~~~~G~~V 58 (67)
T cd06850 36 ENEVTAPVAGVVKEILVKEGDQV 58 (67)
T ss_pred EEEEeCCCCEEEEEEEECCCCEE
Confidence 46789999999998887777654
No 272
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=33.88 E-value=48 Score=26.94 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 233 QLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 233 ~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
.++|..+..++.. .++.++...+...|+.=..++|+.+||.+.++..
T Consensus 8 ~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566655555544 4566667777777766678899999999988775
No 273
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=29.55 E-value=56 Score=37.96 Aligned_cols=51 Identities=25% Similarity=0.499 Sum_probs=34.5
Q ss_pred eeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEE
Q 007303 476 VAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 549 (608)
Q Consensus 476 ~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~ 549 (608)
.+.||++|++....++.|. .| + +.++|+ |. ++ -|.| ...+||++|+|..+.
T Consensus 480 ~i~aP~~G~v~~L~~v~D~-vF-------s-~~~mG~---------G~-AI---~P~~-~~v~AP~~G~v~~vf 530 (627)
T PRK09824 480 GICSPMTGEVVPLEQVADT-TF-------A-SGLLGK---------GI-AI---LPSV-GEVRSPVAGRVASLF 530 (627)
T ss_pred hcccccceEEeeHHHCCCc-cc-------c-ccccCC---------ce-Ee---cCCC-CeEEccCCeEEEEEc
Confidence 5899999999998887642 11 1 123333 22 32 3777 699999999998654
No 274
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=28.10 E-value=86 Score=32.74 Aligned_cols=55 Identities=20% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHh
Q 007303 221 RILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLAL 281 (608)
Q Consensus 221 ~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~ 281 (608)
.+++.+|.|.|..|+.+||......-....+.+.++. .+..-.-|-+|+.++=+.
T Consensus 300 HVMk~vDtNqDRlvtleEFL~~t~~kef~~p~e~WEt------l~q~~~yTeEEL~~fE~e 354 (442)
T KOG3866|consen 300 HVMKQVDTNQDRLVTLEEFLNDTDNKEFNPPKEEWET------LGQKKVYTEEELQQFERE 354 (442)
T ss_pred HHHHhcccchhhhhhHHHHHhhhhhcccCCcchhhhh------hcccccccHHHHHHHHHH
Confidence 4788999999999999999988776333334333321 122334566666655433
No 275
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=27.71 E-value=3.4e+02 Score=24.79 Aligned_cols=61 Identities=8% Similarity=0.062 Sum_probs=39.0
Q ss_pred CCceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEec
Q 007303 473 REEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIP 552 (608)
Q Consensus 473 ~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~ 552 (608)
+...+.+|.+|+|..+. ++..+.+ ..|..+..-=+-.-.+-..+|.+|+|.+...-.
T Consensus 60 ~~~~v~Ap~~G~V~~i~-V~~Gd~V----------------------~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~ 116 (130)
T PRK06549 60 GADAMPSPMPGTILKVL-VAVGDQV----------------------TENQPLLILEAMKMENEIVASSAGTVTAIHVTP 116 (130)
T ss_pred CCcEEECCCCEEEEEEE-eCCCCEE----------------------CCCCEEEEEeccCccEEEEcCCCeEEEEEEeCC
Confidence 45678899999998864 3332222 112222222233446778999999999998888
Q ss_pred Ccee
Q 007303 553 GCLY 556 (608)
Q Consensus 553 G~~~ 556 (608)
|.-.
T Consensus 117 Gd~V 120 (130)
T PRK06549 117 GQVV 120 (130)
T ss_pred CCEe
Confidence 8643
No 276
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=27.48 E-value=3.3e+02 Score=32.76 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=45.0
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHh----------cCcccHHHHHHHHHHhcCCC----CcccCHHHHHHHH
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAF----------GNQVAANKKEELFKAADKNG----DGVVSVDELAALL 279 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~l----------g~~~~~eel~~~F~~~D~d~----dG~Is~eEf~~~l 279 (608)
++++|..+..++.-+++.++|...+..- -....+..+..+++.+..|. +|.++.+-|.+++
T Consensus 223 ie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 223 IEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred HHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 7788888877777788888888887642 12345567888888886664 5888888888877
No 277
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=27.01 E-value=75 Score=36.85 Aligned_cols=51 Identities=22% Similarity=0.445 Sum_probs=34.5
Q ss_pred eeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEE
Q 007303 476 VAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFV 549 (608)
Q Consensus 476 ~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~ 549 (608)
.+.||++|++....++.|. .|- +.++|+ |. ++ -|.| +..+||++|+|..+.
T Consensus 464 ~i~aP~~G~~~~l~~v~D~-vFs--------~~~~G~---------G~-ai---~P~~-~~v~aP~~G~v~~~~ 514 (610)
T TIGR01995 464 SLYAPVAGEMLPLNEVPDE-VFS--------SGAMGK---------GI-AI---LPTE-GEVVAPVDGTVTAVF 514 (610)
T ss_pred eeccccceEEeeHhhCCCc-ccc--------ccCcCC---------ce-Ee---eCCC-CEEECCCCeEEEEEc
Confidence 5899999999998877642 110 123333 33 22 3777 789999999997654
No 278
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.52 E-value=53 Score=35.25 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=54.1
Q ss_pred eEEEEEEeeee--------eccCCCceEEEecCcce----EEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhh
Q 007303 54 GIALLTLISAE--------MKFKDKWLACVSLGEQT----CRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVI 121 (608)
Q Consensus 54 ~~~~~~~~~a~--------~~~~d~~~~~~~~~~~~----~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 121 (608)
|-+.++++.|+ --+.+||+++|.++... .+|+..+
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~--------------------------------- 315 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR--------------------------------- 315 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccc---------------------------------
Confidence 77889999887 13889999999887643 5666666
Q ss_pred hhcccCCCCCccccccceeeccC-CCcceeeEEe-eccccccCCcCcceeeecccc
Q 007303 122 SFFWCSTDKPIWNSEKKLLLETN-GPHVARISVF-ETNRLSKSNLEGYCEVDLLEF 175 (608)
Q Consensus 122 ~~~~~~tlnP~wne~~~~~ve~~-~~~~l~~~v~-D~D~~s~~D~iG~~~i~l~el 175 (608)
+|+.|.+.. .+.+++. ....+...+| |+.+....-++|-..+-+.|+
T Consensus 316 -----kT~~plyqq--~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL 364 (405)
T KOG2060|consen 316 -----KTLDPLYQQ--QLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDEL 364 (405)
T ss_pred -----ccCchhhhh--hhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhh
Confidence 888777665 5555444 3455667766 233333333567666666664
No 279
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.49 E-value=33 Score=41.23 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=54.2
Q ss_pred HHHHhcccccCCCCcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCCCcccCHHHHHHHHHhh
Q 007303 219 ARRILSIVDYNQDGQLSFKEFSDLISAFGNQVAANKKEELFKAADKNGDGVVSVDELAALLALQ 282 (608)
Q Consensus 219 l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~dG~Is~eEf~~~l~~~ 282 (608)
..++|...|.+.+|.|+..+....+.. ..++...+...+...|.+++|.|+++||.-.+..+
T Consensus 285 ~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 285 YSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhh
Confidence 567899999999999999999998876 45788899999999999999999999987665443
No 280
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=23.29 E-value=32 Score=33.61 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=39.4
Q ss_pred hccccc-CCCCcccHHHHHHHHHHhcCcccH-HHHHHHHHHhcCCCCcccCHHHHHHHH
Q 007303 223 LSIVDY-NQDGQLSFKEFSDLISAFGNQVAA-NKKEELFKAADKNGDGVVSVDELAALL 279 (608)
Q Consensus 223 f~~~D~-d~dG~Is~eEf~~~l~~lg~~~~~-eel~~~F~~~D~d~dG~Is~eEf~~~l 279 (608)
|-.+|+ -.||++|-.|+.-+-.. -.+. .-+..+|+..|.|+||+|+.+|+...+
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap---~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP---LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCCCccccccccccccccCC---cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 344554 45799999988765322 1233 346788999999999999999998776
No 281
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=22.71 E-value=5.7e+02 Score=24.03 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=37.6
Q ss_pred CCceeeecCCceeeeeeeccCCceEEEcCcccchhcccCCCccccCcCCCeEEEEEeCCCCceeeecccCeEEeEEEEec
Q 007303 473 REEVAVCAADSRLMAFKSVEDSLRFWIKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIP 552 (608)
Q Consensus 473 ~~~~~vsPaDg~~~~~~~i~~~~~~~iKg~~ysl~~lL~~~~~a~~f~~G~~~~~~Lsp~dYHR~h~P~~g~v~~~~~i~ 552 (608)
+...+.||..|+|..+. ++..+.+. +|+ .+..-=+-.-.....+|.+|+|.+...-+
T Consensus 83 ~~~~v~ap~~G~I~~~~-V~~Gd~V~-~Gq---------------------~l~~iEamKme~eI~Ap~~G~V~~i~v~~ 139 (153)
T PRK05641 83 GENVVTAPMPGKILRIL-VREGQQVK-VGQ---------------------GLLILEAMKMENEIPAPKDGVVKKILVKE 139 (153)
T ss_pred CCCEEECCCCeEEEEEE-eCCCCEEc-CCC---------------------EEEEEeecccceEEecCCCeEEEEEEcCC
Confidence 45678999999999874 44332221 111 11111122224577999999999998878
Q ss_pred Ccee
Q 007303 553 GCLY 556 (608)
Q Consensus 553 G~~~ 556 (608)
|+..
T Consensus 140 Gd~V 143 (153)
T PRK05641 140 GDTV 143 (153)
T ss_pred CCEE
Confidence 8754
No 282
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=22.33 E-value=1.8e+02 Score=26.88 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=35.0
Q ss_pred CcccHHHHHHHHHHhcCcccHHHHHHHHHHhcCCC-------CcccCHHHHHHHHHhhcc-cCcccCCchhHHHhH
Q 007303 232 GQLSFKEFSDLISAFGNQVAANKKEELFKAADKNG-------DGVVSVDELAALLALQQE-KEPLMNCCPVCGETL 299 (608)
Q Consensus 232 G~Is~eEf~~~l~~lg~~~~~eel~~~F~~~D~d~-------dG~Is~eEf~~~l~~~~e-~~~~~~~~~~~~~~l 299 (608)
+.|+-+||.++-.-. ..+..+++.+++.|..+| ++.|+++-|+.+|+..-+ ..|+ ..|+..+
T Consensus 6 ~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~----~lc~hLF 75 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPE----DLCQHLF 75 (138)
T ss_dssp S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--H----HHHHHHH
T ss_pred eccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCH----HHHHHHH
Confidence 678888887764432 123446777777774443 568999999999988644 2344 4566664
No 283
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=22.26 E-value=2.6e+02 Score=26.44 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=59.6
Q ss_pred EEEEEEeeee-e--------ccCCCceEE-EecCcceEEeeeehhhhhhHhhccccchhhhhchhhhHHHHHHHhhhhhc
Q 007303 55 IALLTLISAE-M--------KFKDKWLAC-VSLGEQTCRTAISDKLRTFARLQNSHFFCLLVDSSFMLTLFSFLFVISFF 124 (608)
Q Consensus 55 ~~~~~~~~a~-~--------~~~d~~~~~-~~~~~~~~~t~v~~~l~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 124 (608)
.+.|+|..++ + +.-+.-+.+ +..+.|.++++-+.
T Consensus 10 yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp------------------------------------ 53 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP------------------------------------ 53 (156)
T ss_pred EEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc------------------------------------
Confidence 5677777777 1 222233333 37788999999999
Q ss_pred ccCCCCCccccccceeeccCC-------------CcceeeEEeeccccccCCcCcceeeecccccccCc
Q 007303 125 WCSTDKPIWNSEKKLLLETNG-------------PHVARISVFETNRLSKSNLEGYCEVDLLEFLTKDS 180 (608)
Q Consensus 125 ~~~tlnP~wne~~~~~ve~~~-------------~~~l~~~v~D~D~~s~~D~iG~~~i~l~elLs~ee 180 (608)
.+.+|.+++.|-+.++.+. ...+.+-+.-.|..+...++|...+++..+|....
T Consensus 54 --~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~ 120 (156)
T PF15627_consen 54 --CACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN 120 (156)
T ss_pred --cccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCC
Confidence 8899999997777764431 23455666666766666778888888887765443
No 284
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=20.87 E-value=1.7e+02 Score=35.19 Aligned_cols=92 Identities=14% Similarity=0.049 Sum_probs=59.8
Q ss_pred hhhhhccCCCCCchh----hHHHHhhcCCCCChhh--hHHHHHHHhcccccCCCCcccHHHHHHHHHHhcC-cccHHHHH
Q 007303 184 SEVFDLLDPSSSNKI----VGKISLSCSVEDPIET--EKSFARRILSIVDYNQDGQLSFKEFSDLISAFGN-QVAANKKE 256 (608)
Q Consensus 184 ~eiF~~~D~d~dGkI----l~ell~~l~~~~~~~~--e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~lg~-~~~~eel~ 256 (608)
...|..++....+.. +...+..++. ...++ -...|..+....|.+..|.+++.+|...|..-.. ..+..++-
T Consensus 750 rAle~~~~~~d~~aa~~e~~~~~Lmslg~-~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~r~i 828 (890)
T KOG0035|consen 750 RALENEQDKIDGGAASPEELLRCLMSLGY-NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTELRAI 828 (890)
T ss_pred HHHHhHHHHhhcccCCHHHHHHHHHhcCc-ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHHHHH
Confidence 456666666555555 3334444543 22221 1234677778888888999999999999876333 33455677
Q ss_pred HHHHHhcCCCCcccCHHHHHH
Q 007303 257 ELFKAADKNGDGVVSVDELAA 277 (608)
Q Consensus 257 ~~F~~~D~d~dG~Is~eEf~~ 277 (608)
..|+.+-++.. +|..+|+.+
T Consensus 829 ~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 829 LAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHcchh-HHHHHHHHh
Confidence 77777755554 788998887
No 285
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=20.40 E-value=1e+02 Score=32.82 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=41.3
Q ss_pred hhhhccCCCCCchhhHHHHhhcCCCCChhhhHHHHHHHhcccccCCCCcccHHHHHHHHHH
Q 007303 185 EVFDLLDPSSSNKIVGKISLSCSVEDPIETEKSFARRILSIVDYNQDGQLSFKEFSDLISA 245 (608)
Q Consensus 185 eiF~~~D~d~dGkIl~ell~~l~~~~~~~~e~~~l~~~f~~~D~d~dG~Is~eEf~~~l~~ 245 (608)
=+|+.+|.+.|+.+-..-+..+.. .-.+.= ++..|+..|...||.|+-.|...-+..
T Consensus 254 WMFnklD~N~Dl~Ld~sEl~~I~l-dknE~C---ikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 254 WMFNKLDTNYDLLLDQSELRAIEL-DKNEAC---IKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhccccccccccCHHHhhhhhc-cCchhH---HHHHHhhhcccccCccccchhhhhhcc
Confidence 379999999999983333333321 112222 789999999999999999999877654
Done!