Query 007304
Match_columns 608
No_of_seqs 159 out of 288
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 21:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2238 Uncharacterized conser 100.0 1.2E-67 2.6E-72 584.1 1.9 567 1-604 6-592 (795)
2 PF10296 DUF2404: Putative int 99.9 1.9E-26 4E-31 200.2 12.2 91 352-442 1-91 (91)
3 KOG2238 Uncharacterized conser 99.9 1.1E-24 2.5E-29 243.1 3.3 232 345-598 501-764 (795)
4 KOG3532 Predicted protein kina 98.5 2.3E-07 5E-12 104.3 7.5 167 346-602 99-293 (1051)
5 COG5038 Ca2+-dependent lipid-b 98.0 2E-05 4.3E-10 93.6 10.5 184 346-604 221-413 (1227)
6 PF00169 PH: PH domain; Inter 97.7 0.00051 1.1E-08 57.2 10.2 80 98-184 18-103 (104)
7 cd01260 PH_CNK Connector enhan 97.6 0.00031 6.7E-09 60.8 8.4 72 99-183 22-96 (96)
8 cd01246 PH_oxysterol_bp Oxyste 97.3 0.0012 2.7E-08 55.2 8.2 72 97-183 15-91 (91)
9 cd01250 PH_centaurin Centaurin 97.2 0.0014 3E-08 55.3 7.9 74 97-183 16-94 (94)
10 cd01237 Unc112 Unc-112 pleckst 97.0 0.0038 8.2E-08 57.0 8.4 78 99-186 22-105 (106)
11 cd00821 PH Pleckstrin homology 96.9 0.006 1.3E-07 49.0 8.5 75 97-183 16-96 (96)
12 cd01252 PH_cytohesin Cytohesin 96.9 0.0077 1.7E-07 55.0 9.7 82 99-187 18-116 (125)
13 smart00233 PH Pleckstrin homol 96.6 0.018 4E-07 46.6 9.0 78 97-184 18-101 (102)
14 cd01233 Unc104 Unc-104 pleckst 96.5 0.014 3.1E-07 51.5 8.4 75 99-183 20-97 (100)
15 cd01264 PH_melted Melted pleck 96.4 0.019 4.1E-07 51.9 8.5 76 99-183 21-100 (101)
16 cd01253 PH_beta_spectrin Beta- 96.3 0.017 3.6E-07 50.7 7.7 73 99-183 25-104 (104)
17 cd01257 PH_IRS Insulin recepto 95.9 0.046 1E-06 49.2 8.4 68 100-180 17-98 (101)
18 cd01244 PH_RasGAP_CG9209 RAS_G 95.8 0.049 1.1E-06 48.8 8.2 77 96-183 20-98 (98)
19 cd00900 PH-like Pleckstrin hom 95.6 0.094 2E-06 42.4 8.6 77 97-183 19-99 (99)
20 cd01251 PH_centaurin_alpha Cen 95.6 0.079 1.7E-06 47.3 8.7 80 99-185 18-101 (103)
21 cd01238 PH_Tec Tec pleckstrin 95.6 0.087 1.9E-06 47.2 9.0 80 96-182 20-105 (106)
22 cd01263 PH_anillin Anillin Ple 95.5 0.04 8.6E-07 51.4 6.8 85 99-183 21-122 (122)
23 cd01247 PH_GPBP Goodpasture an 95.4 0.084 1.8E-06 46.3 8.3 69 99-182 17-90 (91)
24 cd01219 PH_FGD FGD (faciogenit 95.4 0.11 2.4E-06 46.1 9.1 75 97-185 18-100 (101)
25 cd01235 PH_SETbf Set binding f 94.8 0.22 4.8E-06 43.0 8.9 77 99-183 17-100 (101)
26 cd01236 PH_outspread Outspread 93.9 0.3 6.5E-06 44.3 8.2 94 65-181 1-101 (104)
27 cd01265 PH_PARIS-1 PARIS-1 ple 93.9 0.33 7.3E-06 42.6 8.2 70 99-183 19-93 (95)
28 cd01218 PH_phafin2 Phafin2 Pl 93.9 0.37 8.1E-06 43.8 8.7 74 100-186 21-100 (104)
29 cd01245 PH_RasGAP_CG5898 RAS G 93.8 0.29 6.4E-06 44.0 7.8 73 100-183 19-98 (98)
30 cd01220 PH_CDEP Chondrocyte-de 93.5 0.48 1E-05 42.4 8.6 73 100-185 19-98 (99)
31 cd01266 PH_Gab Gab (Grb2-assoc 93.3 0.35 7.5E-06 43.2 7.5 77 98-182 20-106 (108)
32 cd01230 PH_EFA6 EFA6 Pleckstri 93.3 0.58 1.3E-05 43.3 9.0 76 99-186 28-113 (117)
33 cd01241 PH_Akt Akt pleckstrin 91.2 0.86 1.9E-05 40.5 7.2 75 99-184 19-102 (102)
34 PF15413 PH_11: Pleckstrin hom 90.7 0.55 1.2E-05 42.6 5.7 31 153-183 82-112 (112)
35 PF01102 Glycophorin_A: Glycop 88.0 0.65 1.4E-05 43.6 4.1 28 6-33 67-94 (122)
36 cd01243 PH_MRCK MRCK (myotonic 86.9 3.1 6.6E-05 39.3 7.8 96 81-182 9-117 (122)
37 cd01224 PH_Collybistin Collybi 80.0 7.4 0.00016 36.1 7.2 57 119-182 47-105 (109)
38 PF01034 Syndecan: Syndecan do 77.1 0.85 1.8E-05 38.5 0.2 30 4-33 10-39 (64)
39 cd01254 PH_PLD Phospholipase D 73.0 16 0.00035 33.6 7.5 77 99-183 35-121 (121)
40 PF15409 PH_8: Pleckstrin homo 66.3 34 0.00074 30.6 7.8 68 99-183 16-88 (89)
41 PF03229 Alpha_GJ: Alphavirus 62.5 10 0.00022 35.7 3.9 35 4-38 84-119 (126)
42 cd01261 PH_SOS Son of Sevenles 58.7 70 0.0015 29.7 8.7 73 99-183 22-108 (112)
43 PF01273 LBP_BPI_CETP: LBP / B 53.8 63 0.0014 30.2 7.8 27 366-392 3-29 (164)
44 PF13782 SpoVAB: Stage V sporu 52.9 18 0.00038 33.7 3.8 30 2-31 54-84 (110)
45 PF15410 PH_9: Pleckstrin homo 51.4 1.2E+02 0.0025 27.8 9.0 72 101-184 30-118 (119)
46 cd01256 PH_dynamin Dynamin ple 50.6 85 0.0018 29.2 7.7 75 100-179 22-100 (110)
47 PF11240 DUF3042: Protein of u 50.0 22 0.00047 29.3 3.4 29 1-29 1-29 (54)
48 KOG1631 Translocon-associated 48.3 31 0.00067 36.0 5.1 16 3-18 185-200 (261)
49 cd01223 PH_Vav Vav pleckstrin 48.2 1E+02 0.0023 29.0 8.1 99 63-186 4-113 (116)
50 PF11216 DUF3012: Protein of u 47.6 18 0.0004 26.8 2.4 26 174-204 4-29 (32)
51 PRK13707 conjugal transfer pil 46.7 19 0.00041 32.8 3.0 30 2-31 34-63 (101)
52 PF06305 DUF1049: Protein of u 45.7 27 0.00059 28.4 3.5 13 3-15 27-39 (68)
53 PF15405 PH_5: Pleckstrin homo 45.2 21 0.00045 33.8 3.1 38 142-183 97-134 (135)
54 cd01249 PH_oligophrenin Oligop 43.5 77 0.0017 29.3 6.3 50 119-180 52-101 (104)
55 smart00328 BPI1 BPI/LBP/CETP N 43.5 3.6E+02 0.0078 27.1 15.9 27 366-392 8-34 (225)
56 cd01242 PH_ROK Rok (Rho- assoc 43.1 1.4E+02 0.0031 28.0 8.1 79 98-182 21-108 (112)
57 cd00025 BPI1 BPI/LBP/CETP N-te 39.8 4.1E+02 0.0089 26.8 13.5 48 367-414 13-63 (223)
58 PF11511 RhodobacterPufX: Intr 35.7 70 0.0015 27.5 4.4 26 6-31 27-52 (67)
59 COG3086 RseC Positive regulato 35.6 65 0.0014 31.6 4.8 23 18-40 112-134 (150)
60 PF14593 PH_3: PH domain; PDB: 33.8 1.8E+02 0.0038 26.7 7.1 68 97-183 27-98 (104)
61 PF07178 TraL: TraL protein; 33.7 47 0.001 29.5 3.4 29 3-31 29-57 (95)
62 PRK11486 flagellar biosynthesi 33.3 47 0.001 31.6 3.4 22 10-31 22-43 (124)
63 cd01228 PH_BCR-related BCR (br 30.6 53 0.0012 30.0 3.2 24 159-182 69-92 (96)
64 PF08374 Protocadherin: Protoc 29.6 27 0.00059 36.0 1.3 22 4-25 39-60 (221)
65 COG3495 Uncharacterized protei 27.6 38 0.00082 33.1 1.8 14 549-562 102-115 (166)
66 CHL00008 petG cytochrome b6/f 27.4 1.1E+02 0.0024 23.4 3.8 28 1-28 1-29 (37)
67 PF06596 PsbX: Photosystem II 27.3 91 0.002 24.2 3.4 23 4-26 8-30 (39)
68 PRK00665 petG cytochrome b6-f 27.1 1.2E+02 0.0025 23.4 3.8 28 1-28 1-29 (37)
69 PF07584 BatA: Aerotolerance r 25.0 78 0.0017 26.8 3.1 26 1-28 1-27 (77)
70 PF13373 DUF2407_C: DUF2407 C- 24.5 38 0.00082 32.6 1.2 20 2-29 94-113 (140)
71 PRK01026 tetrahydromethanopter 23.3 1E+02 0.0022 27.2 3.4 24 2-25 50-73 (77)
72 PF02529 PetG: Cytochrome B6-F 22.9 1.2E+02 0.0027 23.3 3.4 25 4-28 5-29 (37)
73 TIGR02762 TraL_TIGR type IV co 22.8 96 0.0021 27.8 3.4 19 3-21 29-47 (95)
74 PF15176 LRR19-TM: Leucine-ric 21.2 94 0.002 28.7 3.0 21 3-23 18-38 (102)
75 PF06295 DUF1043: Protein of u 21.0 49 0.0011 31.1 1.2 11 3-13 5-15 (128)
76 PRK09459 pspG phage shock prot 21.0 1.6E+02 0.0034 26.0 4.1 29 3-31 31-65 (76)
77 PF05550 Peptidase_C53: Pestiv 20.2 1.2E+02 0.0025 30.0 3.5 39 91-129 101-141 (168)
78 cd01226 PH_exo84 Exocyst compl 20.1 2.7E+02 0.0059 25.6 5.7 54 118-184 45-98 (100)
No 1
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=100.00 E-value=1.2e-67 Score=584.11 Aligned_cols=567 Identities=40% Similarity=0.597 Sum_probs=475.4
Q ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCcCCCccc--hhHHhhhccceEEEeCCCC-
Q 007304 1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKTKKVASFSPSPSSLDSSEVLDPQQ--SLEFAYKKQGYVWVLEPEK- 76 (608)
Q Consensus 1 ~~~-~~~~f~~g~~~l~~~e~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~wv~~~~~- 76 (608)
|++ |++|+|+|.++.+-++..+++|+.++++.+ +++++..+.. +.+..+.+|.| ..+|++++||++||.++++
T Consensus 6 ~~~~fl~~~llg~vt~ls~~~~~~~~l~~~ln~~-~~k~esk~~~--d~~~~d~~~~q~~~~~~s~~pq~~~~i~el~e~ 82 (795)
T KOG2238|consen 6 GFGVFLAGYLLGGVTFLPAELFGLLYLLKHLNYS-LDKIESKSES--DPSTKDFIPRQTRSIDFSINPQGVVKIQELEEQ 82 (795)
T ss_pred cchhhhhhhhhcceeechHHHHHHHHhhhhhhHH-Hhhhcccccc--CcccccccccccccccccCCcccchhhhcchhh
Confidence 344 999999999999999999999999999988 5555555555 99999999999 9999999999999999863
Q ss_pred -CCc--cccchHHHhhc---cceeeccceeeeEeeCceEEEecC-CCCeeEEecCCcEEEEEeCCCccccccccccCeeE
Q 007304 77 -VPK--EKFSKEQKKKK---EFLEVYPVRKYAKIKHRALILTST-DGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKV 149 (608)
Q Consensus 77 -~~k--~k~~k~~k~~k---~~~ev~p~~~~~~lk~~~L~l~~~-dg~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkv 149 (608)
.++ -|.+++|+++. .+.+.+|+|.++.|+|+.++|.+. |+.++++-|.||.|+++|.+-++.++|+++||||+
T Consensus 83 ~~~~~ssk~~~~q~K~~~~~~~~~~~~~r~~~~i~d~~t~~~~~~d~~~~~~~l~~~~v~~~s~~~l~v~~~~~~f~iK~ 162 (795)
T KOG2238|consen 83 LLVKMSSKGPKTQKKQRYYHGLENAHPLRNFARIKDHKTALQDQIDPAQTPSFLLGCFVLAKSGSFLPVRKWHKRFPIKV 162 (795)
T ss_pred hhhhhcccCchhhceeeccCCcchhhhhhhhhhhhhhhhhhhcccccccchhhhhhcccccccccchhhhhhcccceeec
Confidence 333 29999999988 799999999999999999999995 99999999999999999999999999999999999
Q ss_pred ecCCc--ccccCceeEEEEeccchhHHHHHHHHHHHhccccchhhH--HHHHHHHHHHHHhhhhccCCcccCCCCCCCCC
Q 007304 150 ENKSS--VLYNGSKLIYIFLETSWEKEAWCKALRLASCEDKKRLEW--FTKLNEDFHIYLTTLVAGYPSFTKPSTGMTGE 225 (608)
Q Consensus 150 e~~~~--~iy~~sk~~~~y~et~~EKEsWckaLr~as~~~k~~~~w--~~kl~~~f~~y~~~l~~~~p~~~k~~~g~~g~ 225 (608)
+.... .+|-|..++|+|++|+|+|++||++||+|.+.++++..| .+.++.+|+.|...++.-||.||||+.|
T Consensus 163 ~s~~~~l~~~~~~~v~~~f~~ts~~k~s~~~~l~~~~~e~~~~~~~~~~~l~k~D~r~~~~~~~vIy~g~mk~~~~---- 238 (795)
T KOG2238|consen 163 ESQISNLVTYIGNQVFLIFFETSWEKESWCKKLRLALDENQERFHWTCSALLKEDTRSLDAKLGVIYPGFMKPSSG---- 238 (795)
T ss_pred ccccceeEeeecceeeeeeeeccccccchhhhhcccCChhHhhhhhhhhhccCccchhhcccCCeeeecccCcccc----
Confidence 99988 899999999999999999999999999999999999999 6999999999999999999999999986
Q ss_pred CCCCCCccccccccccCCCCchhHHHHHHHHHhhhcCCCCccccccccccccccccccccCCCCCCcccccccccCCCCC
Q 007304 226 SPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEKFRPFQDSVLGATSVKSRTSKV 305 (608)
Q Consensus 226 ~~~~~~~~~~~d~~~~~d~s~sk~r~~~kkl~rk~s~~~~~~~~~~~~~~~~erk~~~~~~~~~~~~~~~~~~~~~t~~~ 305 (608)
|+.|..|..+ +.+|+||++++++..+.+..++.- ..+++++++.. .+|+++-.++.....
T Consensus 239 -----~s~e~~dk~t---t~s~~Vrl~g~~~~~k~~~k~v~k------~a~~dp~~~~~--~~q~s~~~~~s~i~l---- 298 (795)
T KOG2238|consen 239 -----FSSENLDKGT---THSSKVRLEGSMFSFKRSDKNVDK------EARDDPTTNSS--LSQNSYSNGSSTISL---- 298 (795)
T ss_pred -----CCcccccccc---ccceEEEecccceeEecccccccc------hhhcccccccc--ccccccccCCCceec----
Confidence 7888888766 456999999999998875533211 11556665442 334433211111000
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccccccc---cCCCCCccCCchhhHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcC
Q 007304 306 PNCSGEENAEPLSSTFPRSKSQSQLSVVS---DADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSN 382 (608)
Q Consensus 306 ~~~s~~~~~~~~~~~~~~~~~~~~ls~~~---~~~s~e~~~idEs~~wlNaLIgRLFfD~~rt~~~~~~I~~KIQkKLsk 382 (608)
.+--.+..-|..+..++...+ +.|+.++...|+.|.|+|++++|+|+++.+...+...+++|||+.+++
T Consensus 299 --------~pk~~a~~~~~~tk~pi~ir~~sh~~ds~skte~d~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~ 370 (795)
T KOG2238|consen 299 --------DPKRLANNRHWKTKVPIQIRFGSHDRDSESKTETDEGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSK 370 (795)
T ss_pred --------CchhhhccccccccCceEEEecccccccccccccchhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhc
Confidence 111222334444444444333 555766766799999999999999999999966999999999999999
Q ss_pred CCCCCCCCceEEEEeecCCCCceeecccccccCCCCCeEEEEeEEEcCCeEEEEEEEEEeeeecccccccccCcccccCC
Q 007304 383 MRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAV 462 (608)
Q Consensus 383 IklPsFI~eI~VteLDLG~s~P~I~~vr~p~lD~~G~wa~ElDv~Y~Gg~~ltIETkLnL~kl~~~k~~~~~n~~es~s~ 462 (608)
||+|.|++++.+..+|.|+.+|+||++++.++.+.|.|+++.||.|.|+.++.|+|+|+.+....+++++..-.. +...
T Consensus 371 ~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~di~y~~d~~~~i~~~v~~~e~~~~~~ie~~~~q-p~k~ 449 (795)
T KOG2238|consen 371 MRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEIDIEYRGDLTIIIETRVDIREGSRQKGIEESLLQ-PKKI 449 (795)
T ss_pred cccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccceeeccccccccccccchhhhhhcchhhhhhhC-cchh
Confidence 999999999999999999999999999999999999999999999999999999999999988888877666443 6678
Q ss_pred CCCccccchhhhh-ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcchhhhhh-hhhccceeccEEEEEE
Q 007304 463 GDVSSDLLEGFEY-FGKQLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVSTSGSRWKSILN-SIAKQVSQVPISLSIR 540 (608)
Q Consensus 463 g~~~sdl~e~ie~-~G~~~~~s~~~~ds~e~~~ed~~kp~~~~~~~s~~~~~~~~sr~k~iv~-kIA~~VS~vPL~LsV~ 540 (608)
+.+.+.+.+++.+ |-+++.....+.+.++...+..-. ++.+.+..+...++..++|+++|. +|+.+++..|+.|.+.
T Consensus 450 ~~~~s~l~~~~~d~~~kq~~~~~~t~~~~~~~~~~~vs-~~sK~~~~t~~~~~~~s~~~~~L~~ri~~~f~~d~~~ls~~ 528 (795)
T KOG2238|consen 450 ELVKSPLLEGLKDPFEKQIWVPFSTVSAQDVESESIVS-DESKLSEGTKTISAEKSKWKSALKERIVEQFSDDPIWLSIV 528 (795)
T ss_pred cccCchhhhhccchhhhceeeeccccCCCccccccccc-ccccCCCCCcchhhhhhhhHHHhhhheeecccCCceeecch
Confidence 8899999988876 777765555555444433221111 234445556666778899998776 6999999999999999
Q ss_pred EEEEEEEEEEEecCCCCCcEEEEccCCCceeEEEEeeccccccchhhHHHHHHHHHHHHHHhhh
Q 007304 541 VAALRGTLRLHIKPPPSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKVFTFCQM 604 (608)
Q Consensus 541 V~sL~GtL~InIpPPPSDRlWygF~~~P~LeL~ieP~VGeR~Vt~s~Vt~~IEnKLK~~i~~~m 604 (608)
...++|+|..+..|||+|++|+||..+|+|.....|.||++++++.+++....++++..+..-|
T Consensus 529 ~s~lr~kl~~~~~P~~~~~l~~~~ta~pdi~~~~~~~v~e~~~~~~d~~ms~~~~~~~~~rt~~ 592 (795)
T KOG2238|consen 529 SSSLRGKLWEHMKPPPSDQLWFGFTAAPDILQALASKVGEHKITGGDVAMSYIGRFLTALRTKM 592 (795)
T ss_pred hhhhhheehhccCCchhhhhhhccccchhHHHHhhhhhcccccccchHHHHHHhhHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999998776655
No 2
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.94 E-value=1.9e-26 Score=200.23 Aligned_cols=91 Identities=33% Similarity=0.646 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCCCCCCCceEEEEeecCCCCceeecccccccCCCCCeEEEEeEEEcCC
Q 007304 352 NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGG 431 (608)
Q Consensus 352 NaLIgRLFfD~~rt~~~~~~I~~KIQkKLskIklPsFI~eI~VteLDLG~s~P~I~~vr~p~lD~~G~wa~ElDv~Y~Gg 431 (608)
|+|+||+||++++++.|.++|+++||+||+++++|+||++|.|+|+|||+++|.|++++++++|++|...+|+||+|+|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999996669999999999
Q ss_pred eEEEEEEEEEe
Q 007304 432 VVLDVETRLEV 442 (608)
Q Consensus 432 ~~ltIETkLnL 442 (608)
++|+|+|+|++
T Consensus 81 ~~l~l~t~l~~ 91 (91)
T PF10296_consen 81 FSLTLETKLNI 91 (91)
T ss_pred eEEEEEEEEEC
Confidence 99999999985
No 3
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=99.89 E-value=1.1e-24 Score=243.14 Aligned_cols=232 Identities=17% Similarity=0.211 Sum_probs=171.4
Q ss_pred chhhHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCCCCCCCceEEEEeecCCCCceeeccccccc-CCCCCeEEE
Q 007304 345 DEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPT-DMNEVWAFE 423 (608)
Q Consensus 345 dEs~~wlNaLIgRLFfD~~rt~~~~~~I~~KIQkKLskIklPsFI~eI~VteLDLG~s~P~I~~vr~p~l-D~~G~wa~E 423 (608)
.+...|.|+|..||||||.+++.|...+..+||.||..+.+|+|++.+... |.++|-|.++-.+.+ |+.|+| .+
T Consensus 501 ~~~s~~~~~L~~ri~~~f~~d~~~ls~~~s~lr~kl~~~~~P~~~~~l~~~----~ta~pdi~~~~~~~v~e~~~~~-~d 575 (795)
T KOG2238|consen 501 AEKSKWKSALKERIVEQFSDDPIWLSIVSSSLRGKLWEHMKPPPSDQLWFG----FTAAPDILQALASKVGEHKITG-GD 575 (795)
T ss_pred hhhhhhHHHhhhheeecccCCceeecchhhhhhheehhccCCchhhhhhhc----cccchhHHHHhhhhhccccccc-ch
Confidence 567789999999999999999999999999999999999999999999998 999999999999999 999999 89
Q ss_pred EeEEEcCCeEEEEEEEEEeeeecccccccccC--c----ccc-cCCCCCccccchhhhhccccccCCCCCCCCCCCC-CC
Q 007304 424 VDIEYAGGVVLDVETRLEVRELDLHKGIVDAN--S----EEA-GAVGDVSSDLLEGFEYFGKQLNISEGTFDGQDHK-DQ 495 (608)
Q Consensus 424 lDv~Y~Gg~~ltIETkLnL~kl~~~k~~~~~n--~----~es-~s~g~~~sdl~e~ie~~G~~~~~s~~~~ds~e~~-~e 495 (608)
+.+.|.|+|.++++|++||.++...-.++... . +++ .-....++|..+++| .+ .+
T Consensus 576 ~~ms~~~~~~~~~rt~~nL~~l~s~p~v~aek~~~V~r~~at~~~~~~sd~d~~ss~e-----------------s~s~~ 638 (795)
T KOG2238|consen 576 VAMSYIGRFLTALRTKMNLPKLQSIPWVAAEKDDWVTRTTATFRDLSSSDSDTPSSKE-----------------SSSSE 638 (795)
T ss_pred HHHHHHhhHHHHHHhhhcccccccccceeeecccceeeecccchhccccccCCccccc-----------------ccccc
Confidence 99999999999999999998774311111110 0 000 000111222222221 11 11
Q ss_pred C-CCCCCCCCCC-CCCCC-ccCCCcchhhhhh-------------------hhhccceeccEEEE-EEEEEEEEEEEEEe
Q 007304 496 G-DPKPDGLKNN-RSTMP-VSTSGSRWKSILN-------------------SIAKQVSQVPISLS-IRVAALRGTLRLHI 552 (608)
Q Consensus 496 d-~~kp~~~~~~-~s~~~-~~~~~sr~k~iv~-------------------kIA~~VS~vPL~Ls-V~V~sL~GtL~InI 552 (608)
| .|.|-+.+.. ...+. .....+++-.+|+ +--+.++++||++. ++|.+++|+|++||
T Consensus 639 Dk~~~~~~~~~~~~~E~t~~~~q~~kI~~~vd~~~s~s~~~qka~~~~ai~r~i~~~s~tpL~~~~~~vEe~k~~l~~N~ 718 (795)
T KOG2238|consen 639 DKPPRPFGDNVGSDMEGTVNIDQKKKIDDSVDERESQSESFQKAAKAEAIRRPIEDVSNTPLVLLDPEVEELKGPLTENI 718 (795)
T ss_pred ccCCCCccccccccccccccccccchhhhhhhhccccchhhccchhHHhhhcCccccCCCchhccChhhhhhcCCCcCCC
Confidence 1 1111111000 00000 0011122222222 22247999999999 99999999999999
Q ss_pred cCCCCCcEEEEccCCCceeEEEEeeccccccchhhHHHHHHHHHHH
Q 007304 553 KPPPSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKV 598 (608)
Q Consensus 553 pPPPSDRlWygF~~~P~LeL~ieP~VGeR~Vt~s~Vt~~IEnKLK~ 598 (608)
||||+||+||||+..|...+..+|++|+|+++..+++.||+.++++
T Consensus 719 p~ppsd~~~~~~r~~~~~~~k~sps~g~~s~~l~~~~~~ikk~~rq 764 (795)
T KOG2238|consen 719 PPPPSDRNWRGFRRAPIEKLKQSPSSGDRSVELDDVDPWIKKKLRQ 764 (795)
T ss_pred CCCchhhhhhcccccchhhhccCCccCCcccccccccHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999997
No 4
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=98.48 E-value=2.3e-07 Score=104.25 Aligned_cols=167 Identities=19% Similarity=0.338 Sum_probs=130.8
Q ss_pred hhhHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCC----CCCCCCCceEEEEeecCCCCceeecccccccCCCCCe-
Q 007304 346 EATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNM----RTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVW- 420 (608)
Q Consensus 346 Es~~wlNaLIgRLFfD~~rt~~~~~~I~~KIQkKLskI----klPsFI~eI~VteLDLG~s~P~I~~vr~p~lD~~G~w- 420 (608)
.++..+|.++..+|.+++.+...+.|+.+|+|..++++ -.-..++.+.+.|+.+|+.+|.+.+.++-.++....+
T Consensus 99 S~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l 178 (1051)
T KOG3532|consen 99 SSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFL 178 (1051)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhccccccccceEEeecccHHHHH
Confidence 45667799999999999999999999999999988865 2356899999999999999999999887664322211
Q ss_pred -----------------------EEEEeEEEcCCeEEEEEEEEEeeeecccccccccCcccccCCCCCccccchhhhhcc
Q 007304 421 -----------------------AFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFG 477 (608)
Q Consensus 421 -----------------------a~ElDv~Y~Gg~~ltIETkLnL~kl~~~k~~~~~n~~es~s~g~~~sdl~e~ie~~G 477 (608)
.+-+|+.|.|+|+-.|...+-+
T Consensus 179 ~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~~----------------------------------- 223 (1051)
T KOG3532|consen 179 KYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTII----------------------------------- 223 (1051)
T ss_pred HhhhhhhhhcccCCcceecccccccccccccCCCcceecCCcccc-----------------------------------
Confidence 1124555555553222111100
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCcchhhhhhhhhccceeccEEEEEEEEEEEEEEEEEecCCCC
Q 007304 478 KQLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVSTSGSRWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHIKPPPS 557 (608)
Q Consensus 478 ~~~~~s~~~~ds~e~~~ed~~kp~~~~~~~s~~~~~~~~sr~k~iv~kIA~~VS~vPL~LsV~V~sL~GtL~InIpPPPS 557 (608)
.-+ -.+.|+|++++|-+++.+..-|.
T Consensus 224 ----------------------------------------~kk--------------~S~~iKl~~l~Gm~r~~~~r~py 249 (1051)
T KOG3532|consen 224 ----------------------------------------AKK--------------ASLSVKITKLTGMVRVILSRQPY 249 (1051)
T ss_pred ----------------------------------------ccC--------------CceeEEEEEeccceeEEEEeccc
Confidence 001 35789999999999999999999
Q ss_pred CcEEEEccCCCceeEEEEeeccccccchhhHHHHHHHHHHHHHHh
Q 007304 558 DQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKVFTFC 602 (608)
Q Consensus 558 DRlWygF~~~P~LeL~ieP~VGeR~Vt~s~Vt~~IEnKLK~~i~~ 602 (608)
.+|-++|++.|.++..++.++..|++.. .|.+.|++.++..+.+
T Consensus 250 ~hw~~sf~G~P~~e~di~s~~qg~qLQ~-~I~q~i~~~ir~~~~r 293 (1051)
T KOG3532|consen 250 HHWTFSFVGQPIFETDINSQIQGHQLQR-LIPQIIKEAIRRSLQR 293 (1051)
T ss_pred eeeeeeeccCchhhhhhHHHHHHHHHHH-HhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999754 7999999999987654
No 5
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.03 E-value=2e-05 Score=93.59 Aligned_cols=184 Identities=16% Similarity=0.351 Sum_probs=129.4
Q ss_pred hhhHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHcCCCCCCCCCceEEEEeecCCCCceeeccc-ccccCCCCCeEEEE
Q 007304 346 EATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMR-VLPTDMNEVWAFEV 424 (608)
Q Consensus 346 Es~~wlNaLIgRLFfD~~rt~~~~~~I~~KIQkKLskIklPsFI~eI~VteLDLG~s~P~I~~vr-~p~lD~~G~wa~El 424 (608)
|++-|+|.++-++ |- .-++.+..+|.+-+..-|+. -+|+||+.+.|++++||.-+|.|-.+| .|..+. .+..+|+
T Consensus 221 ESveWLNtfL~Kf-W~-i~eP~iSqqV~dqvn~~la~-~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~-dtv~mD~ 296 (1227)
T COG5038 221 ESVEWLNTFLQKF-WP-IIEPSISQQVVDQVNQQLAE-AIPSFIDALALDEFTLGSKPPRIDGIRSYPSTES-DTVVMDV 296 (1227)
T ss_pred hHHHHHHHHHHhh-ee-ccChHHHHHHHHHHHHHHHh-hcchhhhhhhhhhcccCCCCCceeeeeecCCCCC-ceEEEEe
Confidence 8999999999986 44 36899999999999999998 899999999999999999999999999 555554 4444666
Q ss_pred eEEEcCCeEEEEEEEEEeeeecccccccccCcccccCCCCCccccchhhhhccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 007304 425 DIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQGDPKPDGLK 504 (608)
Q Consensus 425 Dv~Y~Gg~~ltIETkLnL~kl~~~k~~~~~n~~es~s~g~~~sdl~e~ie~~G~~~~~s~~~~ds~e~~~ed~~kp~~~~ 504 (608)
|+.+.= .++.++. +. .. . ..+ +||
T Consensus 297 ~~sftP---------~d~sD~t------~~-~~-r-----------~~v-----------------------n~k----- 320 (1227)
T COG5038 297 DFSFTP---------HDISDVT------AT-SA-R-----------ASV-----------------------NPK----- 320 (1227)
T ss_pred eeccCc---------cchhhhh------hH-HH-h-----------hhc-----------------------Ccc-----
Confidence 655321 1110000 00 00 0 000 000
Q ss_pred CCCCCCCccCCCcchhhhhhhhhccceeccEEEEEEEEEEEEEEEEEec---CCC-CCcEEEEccCCCceeEEEEeeccc
Q 007304 505 NNRSTMPVSTSGSRWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHIK---PPP-SDQLWFGFTSMPDIEFAMESSVGD 580 (608)
Q Consensus 505 ~~~s~~~~~~~~sr~k~iv~kIA~~VS~vPL~LsV~V~sL~GtL~InIp---PPP-SDRlWygF~~~P~LeL~ieP~VGe 580 (608)
-+++-+++......++-+.|+-..+.|+|||.+. +=| -.-+=|+|.+.|++++.+.|.=|+
T Consensus 321 ---------------IsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~ 385 (1227)
T COG5038 321 ---------------ISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGD 385 (1227)
T ss_pred ---------------eeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCC
Confidence 0111111221233566678999999999999864 333 467899999999999999998766
Q ss_pred cc---c-chhhHHHHHHHHHHHHHHhhh
Q 007304 581 HK---I-TSGQVALFLINRFKVFTFCQM 604 (608)
Q Consensus 581 R~---V-t~s~Vt~~IEnKLK~~i~~~m 604 (608)
-- | .++-|+.||.+.|...+-++|
T Consensus 386 ~~g~dI~~iPGL~~fI~~~i~~~l~pml 413 (1227)
T COG5038 386 FFGVDIFAIPGLSRFIQEIINSTLGPML 413 (1227)
T ss_pred ccceeEecCccHHHHHHHHHHhhcCCee
Confidence 33 2 679999999999998776655
No 6
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.65 E-value=0.00051 Score=57.17 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=65.2
Q ss_pred ceeeeEeeCceEEEecCCC----C--eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccch
Q 007304 98 VRKYAKIKHRALILTSTDG----S--QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (608)
Q Consensus 98 ~~~~~~lk~~~L~l~~~dg----~--~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~ 171 (608)
-++|++|.++.|++...+. . ...|+|.+|.|........ ...-...+.+.|.++.. +.++|+++|--
T Consensus 18 k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~-~~~~~~~~~f~i~~~~~------~~~~~~~~s~~ 90 (104)
T PF00169_consen 18 KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDF-LSNKKRKNCFEITTPNG------KSYLFSAESEE 90 (104)
T ss_dssp EEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTS-TSTSSSSSEEEEEETTS------EEEEEEESSHH
T ss_pred EEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCcccc-ccccCCCcEEEEEeCCC------cEEEEEcCCHH
Confidence 3689999999999998865 1 5799999998888877532 13445677788886654 89999999999
Q ss_pred hHHHHHHHHHHHh
Q 007304 172 EKEAWCKALRLAS 184 (608)
Q Consensus 172 EKEsWckaLr~as 184 (608)
|++.|.++|+.|.
T Consensus 91 ~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 91 ERKRWIQAIQKAI 103 (104)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
No 7
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.60 E-value=0.00031 Score=60.81 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=58.8
Q ss_pred eeeeEeeCceEEEecCCCC---eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhHHH
Q 007304 99 RKYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA 175 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg~---~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEs 175 (608)
+|+++|+++.|+....+.. ...|+|.||.|..+.. .+ |+|-++|.++. .+++||.+||-=|.+.
T Consensus 22 krwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~-----~~--k~~~F~I~~~~------~~~~~f~a~s~~e~~~ 88 (96)
T cd01260 22 RRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKE-----VK--KKYAFKVCHPV------YKSFYFAAETLDDLSQ 88 (96)
T ss_pred eEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchh-----cC--CceEEEECCCC------CcEEEEEeCCHHHHHH
Confidence 5799999999999976442 5799999998876532 12 67888888654 3788999999999999
Q ss_pred HHHHHHHH
Q 007304 176 WCKALRLA 183 (608)
Q Consensus 176 WckaLr~a 183 (608)
|-.|||.|
T Consensus 89 Wi~ai~~~ 96 (96)
T cd01260 89 WVNHLITA 96 (96)
T ss_pred HHHHHHhC
Confidence 99999976
No 8
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.31 E-value=0.0012 Score=55.23 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=56.7
Q ss_pred cceeeeEeeCceEEEecCCC-----CeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccch
Q 007304 97 PVRKYAKIKHRALILTSTDG-----SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (608)
Q Consensus 97 p~~~~~~lk~~~L~l~~~dg-----~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~ 171 (608)
.-++|++|+++.|++...+. ...+|.|.+|.|..-. + +.+-+.|..+ +.+.++|.++|.=
T Consensus 15 W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~-----~----~~~~F~i~~~------~~~~~~~~a~s~~ 79 (91)
T cd01246 15 WQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDD-----S----DDKCFTIDTG------GDKTLHLRANSEE 79 (91)
T ss_pred ceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECC-----C----CCcEEEEEcC------CCCEEEEECCCHH
Confidence 45789999999999987732 2579999999865421 1 2577777743 3489999999999
Q ss_pred hHHHHHHHHHHH
Q 007304 172 EKEAWCKALRLA 183 (608)
Q Consensus 172 EKEsWckaLr~a 183 (608)
|++.|-.|||.|
T Consensus 80 e~~~Wi~al~~a 91 (91)
T cd01246 80 ERQRWVDALELA 91 (91)
T ss_pred HHHHHHHHHHhC
Confidence 999999999976
No 9
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.25 E-value=0.0014 Score=55.28 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=58.4
Q ss_pred cceeeeEeeCceEEEecCC-----CCeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccch
Q 007304 97 PVRKYAKIKHRALILTSTD-----GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (608)
Q Consensus 97 p~~~~~~lk~~~L~l~~~d-----g~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~ 171 (608)
=.+||++|+++.|++.... .....|+|.+|.|..++... .++|.+.|..++ +.++|.+||.-
T Consensus 16 W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~~-------~~~~f~a~s~~ 82 (94)
T cd01250 16 WKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQP------DRRFCFEVISPT-------KTWHFQADSEE 82 (94)
T ss_pred ceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCcccc------CCceEEEEEcCC-------cEEEEECCCHH
Confidence 3468899999999999642 12568999999987776532 457888887433 88999999999
Q ss_pred hHHHHHHHHHHH
Q 007304 172 EKEAWCKALRLA 183 (608)
Q Consensus 172 EKEsWckaLr~a 183 (608)
|.+.|-.||+.|
T Consensus 83 ~~~~Wi~al~~~ 94 (94)
T cd01250 83 ERDDWISAIQES 94 (94)
T ss_pred HHHHHHHHHhcC
Confidence 999999999854
No 10
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.97 E-value=0.0038 Score=57.00 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=61.4
Q ss_pred eeeeEeeCceEEEecCCC----C-eeEEecCCcEEEE-EeCCCccccccccccCeeEecCCcccccCceeEEEEeccchh
Q 007304 99 RKYAKIKHRALILTSTDG----S-QTSFPLKGCEIKA-VSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg----~-~~~i~l~~C~v~a-vs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~E 172 (608)
+++.+++|.+|+....++ . ...|.|.||.|.. |.- .. ++|.|++..|+ -.|.+.+||=.||-=+
T Consensus 22 rrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~---~~----~kf~I~l~~ps---~~~~r~y~l~cdsEeq 91 (106)
T cd01237 22 QYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNV---AQ----QKFHIKLLIPT---AEGMNEVWLRCDNEKQ 91 (106)
T ss_pred eEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccc---cc----cceEEEEecCC---ccCCeEEEEECCCHHH
Confidence 577999999999985532 2 5688999999863 211 11 36999999886 3466789999999999
Q ss_pred HHHHHHHHHHHhcc
Q 007304 173 KEAWCKALRLASCE 186 (608)
Q Consensus 173 KEsWckaLr~as~~ 186 (608)
=+.|-.|+|+||..
T Consensus 92 ya~Wmaa~rlas~g 105 (106)
T cd01237 92 YAKWMAACRLASKG 105 (106)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999999975
No 11
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.92 E-value=0.006 Score=49.02 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=60.0
Q ss_pred cceeeeEeeCceEEEecCCC-----C-eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccc
Q 007304 97 PVRKYAKIKHRALILTSTDG-----S-QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETS 170 (608)
Q Consensus 97 p~~~~~~lk~~~L~l~~~dg-----~-~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~ 170 (608)
..++|+.|.++.|.+..... . ...|+|.+|.|..+.... ...+.+.|..... +.++|++++.
T Consensus 16 w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~------~~~~~f~i~~~~~------~~~~~~~~s~ 83 (96)
T cd00821 16 WKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDS------GRKNCFEIRTPDG------RSYLLQAESE 83 (96)
T ss_pred ccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcC------CCCcEEEEecCCC------cEEEEEeCCH
Confidence 35789999999999987732 2 579999999998877633 4567777774432 8999999999
Q ss_pred hhHHHHHHHHHHH
Q 007304 171 WEKEAWCKALRLA 183 (608)
Q Consensus 171 ~EKEsWckaLr~a 183 (608)
-|.+.|..+|+.|
T Consensus 84 ~~~~~W~~~l~~~ 96 (96)
T cd00821 84 EEREEWIEALQSA 96 (96)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999875
No 12
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.87 E-value=0.0077 Score=55.00 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=62.6
Q ss_pred eeeeEeeCceEEEecCCC-C--eeEEecCCcEEEEEeCCCccccccccccCeeEecCCc--------------ccccCce
Q 007304 99 RKYAKIKHRALILTSTDG-S--QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSS--------------VLYNGSK 161 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg-~--~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~--------------~iy~~sk 161 (608)
+|+++|.++.|+....+. . ..+|+|.+|.|..+-. + .++|...|..++. +++...+
T Consensus 18 kRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~---~----~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 90 (125)
T cd01252 18 RRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVED---P----SKPFCFELFSPSDKQQIKACKTESDGRVVEGNHS 90 (125)
T ss_pred eEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEccc---C----CCCeeEEEECCccccccccccccccccccccCce
Confidence 578999999999997633 2 5799999999888744 2 2456666665553 2334446
Q ss_pred eEEEEeccchhHHHHHHHHHHHhccc
Q 007304 162 LIYIFLETSWEKEAWCKALRLASCED 187 (608)
Q Consensus 162 ~~~~y~et~~EKEsWckaLr~as~~~ 187 (608)
++||.+||.-|...|-.||+.|...+
T Consensus 91 ~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 91 VYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 77799999999999999999988764
No 13
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.57 E-value=0.018 Score=46.55 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=60.9
Q ss_pred cceeeeEeeCceEEEecCC-----CC-eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccc
Q 007304 97 PVRKYAKIKHRALILTSTD-----GS-QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETS 170 (608)
Q Consensus 97 p~~~~~~lk~~~L~l~~~d-----g~-~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~ 170 (608)
.-++|+.|.++.|.+.... .. ...|+|.+|.|........ =..++.+.|.+++. +.++|+++|.
T Consensus 18 ~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~----~~~~~~f~l~~~~~------~~~~f~~~s~ 87 (102)
T smart00233 18 WKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDS----AKKPHCFEIKTADR------RSYLLQAESE 87 (102)
T ss_pred ceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCcc----CCCceEEEEEecCC------ceEEEEcCCH
Confidence 4578999999999999763 22 5799999998776655322 23456777775553 7999999999
Q ss_pred hhHHHHHHHHHHHh
Q 007304 171 WEKEAWCKALRLAS 184 (608)
Q Consensus 171 ~EKEsWckaLr~as 184 (608)
=|++.|-.+|+.|+
T Consensus 88 ~~~~~W~~~i~~~~ 101 (102)
T smart00233 88 EEREEWVDALRKAI 101 (102)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999885
No 14
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=96.50 E-value=0.014 Score=51.51 Aligned_cols=75 Identities=12% Similarity=0.098 Sum_probs=57.3
Q ss_pred eeeeEeeCceEEEecCCC--C-eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhHHH
Q 007304 99 RKYAKIKHRALILTSTDG--S-QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEA 175 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg--~-~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEs 175 (608)
+|+++|+++.|+....++ . ..+|+|.+|.|..+.... +.-.+.|-+.|. -.++++||.+++--|.+.
T Consensus 20 kRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~---~~~~~~~~F~I~-------t~~rt~~~~A~s~~e~~~ 89 (100)
T cd01233 20 RRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQA---AMVKGPNTFAVC-------TKHRGYLFQALSDKEMID 89 (100)
T ss_pred EEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchh---hhcCCCcEEEEE-------CCCCEEEEEcCCHHHHHH
Confidence 589999999999887744 2 579999999988665422 222244555554 357889999999999999
Q ss_pred HHHHHHHH
Q 007304 176 WCKALRLA 183 (608)
Q Consensus 176 WckaLr~a 183 (608)
|-+||+..
T Consensus 90 Wi~ai~~~ 97 (100)
T cd01233 90 WLYALNPL 97 (100)
T ss_pred HHHHhhhh
Confidence 99999864
No 15
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.36 E-value=0.019 Score=51.91 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=54.1
Q ss_pred eeeeEeeCceEEEecCCCC----eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhHH
Q 007304 99 RKYAKIKHRALILTSTDGS----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKE 174 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg~----~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKE 174 (608)
||+-+|+++.|+-+...+. ..+|+|..|..+-... -..++=.+.|...| ...+++|||++|+.-|+|
T Consensus 21 rRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~--~~~~~~~~~~~Fei-------~tp~rt~~l~A~se~e~e 91 (101)
T cd01264 21 TRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVA--KKRRDRSLPKAFEI-------FTADKTYILKAKDEKNAE 91 (101)
T ss_pred eEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeecc--ccccccccCcEEEE-------EcCCceEEEEeCCHHHHH
Confidence 4889999999987755332 3699999999544332 22232233444444 345699999999999999
Q ss_pred HHHHHHHHH
Q 007304 175 AWCKALRLA 183 (608)
Q Consensus 175 sWckaLr~a 183 (608)
.|-++|.-|
T Consensus 92 ~WI~~i~~a 100 (101)
T cd01264 92 EWLQCLNIA 100 (101)
T ss_pred HHHHHHHhh
Confidence 999999766
No 16
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.32 E-value=0.017 Score=50.74 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=55.1
Q ss_pred eeeeEeeCceEEEecCCCC-----e--eEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccch
Q 007304 99 RKYAKIKHRALILTSTDGS-----Q--TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg~-----~--~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~ 171 (608)
+++|+|+++.|++...++. . ..|.|.||.|..+.... . ++|-+.|.. .+.+.++|-+++.-
T Consensus 25 ~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~--k----~~~~F~l~~------~~~~~~~f~a~s~e 92 (104)
T cd01253 25 NVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYT--K----KKHVFRLRL------PDGAEFLFQAPDEE 92 (104)
T ss_pred eEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcc--c----CceEEEEEe------cCCCEEEEECCCHH
Confidence 5799999999988864321 1 27889999998776522 1 346666663 35589999999999
Q ss_pred hHHHHHHHHHHH
Q 007304 172 EKEAWCKALRLA 183 (608)
Q Consensus 172 EKEsWckaLr~a 183 (608)
|-+.|..||+.|
T Consensus 93 ~~~~Wi~aL~~~ 104 (104)
T cd01253 93 EMSSWVRALKSA 104 (104)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 17
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=95.85 E-value=0.046 Score=49.18 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=50.8
Q ss_pred eeeEeeCc------eEEEecCCC--------CeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEE
Q 007304 100 KYAKIKHR------ALILTSTDG--------SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYI 165 (608)
Q Consensus 100 ~~~~lk~~------~L~l~~~dg--------~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~ 165 (608)
|+-+|++. .|.-.+... +.++|.|.+|....-.+ ..| ++|.|.+..+ ..++||
T Consensus 17 RwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~----d~k--~~~~f~i~t~-------dr~f~l 83 (101)
T cd01257 17 RFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRA----DAK--HRHLIALYTR-------DEYFAV 83 (101)
T ss_pred EEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecc----ccc--cCeEEEEEeC-------CceEEE
Confidence 77888877 677776632 36799999999765322 221 4577777643 468999
Q ss_pred EeccchhHHHHHHHH
Q 007304 166 FLETSWEKEAWCKAL 180 (608)
Q Consensus 166 y~et~~EKEsWckaL 180 (608)
.+||=.|.|.|+++|
T Consensus 84 ~aese~E~~~Wi~~i 98 (101)
T cd01257 84 AAENEAEQDSWYQAL 98 (101)
T ss_pred EeCCHHHHHHHHHHH
Confidence 999999999999998
No 18
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.77 E-value=0.049 Score=48.77 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=59.4
Q ss_pred ccceeeeEeeCceEEEecC--CCCeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhH
Q 007304 96 YPVRKYAKIKHRALILTST--DGSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (608)
Q Consensus 96 ~p~~~~~~lk~~~L~l~~~--dg~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EK 173 (608)
.--+|+.+|.++.|.-.+. +....+|+|.....+..-.. ....+.|++.|.+++ +++||.++|-=|.
T Consensus 20 n~KkRwF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~----~~~~~~~~fqivt~~-------r~~yi~a~s~~E~ 88 (98)
T cd01244 20 HFKKRYFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSD----KSFVNVDIITIVCED-------DTMQLQFEAPVEA 88 (98)
T ss_pred CCceeEEEECCCEEEEECCCCCceeeeEEccceEEEEEcCC----cccCCCceEEEEeCC-------CeEEEECCCHHHH
Confidence 5567889999999988765 34478999987665443222 245557999999876 4899999999999
Q ss_pred HHHHHHHHHH
Q 007304 174 EAWCKALRLA 183 (608)
Q Consensus 174 EsWckaLr~a 183 (608)
+.|-.|||-+
T Consensus 89 ~~Wi~al~k~ 98 (98)
T cd01244 89 TDWLNALEKQ 98 (98)
T ss_pred HHHHHHHhcC
Confidence 9999999853
No 19
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=95.59 E-value=0.094 Score=42.41 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=58.1
Q ss_pred cceeeeEeeCceEEEecCCCC--ee--EEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchh
Q 007304 97 PVRKYAKIKHRALILTSTDGS--QT--SFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (608)
Q Consensus 97 p~~~~~~lk~~~L~l~~~dg~--~~--~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~E 172 (608)
.-++|+.|.++.|.+.+.+.. .. .+++.+..|...... . .+.+.+.|..... +.+..+|+.+|.-|
T Consensus 19 w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~---~---~~~~~F~i~~~~~----~~~~~~~~~~~~~~ 88 (99)
T cd00900 19 WKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDG---S---DDPNCFAIVTKDR----GRRVFVFQADSEEE 88 (99)
T ss_pred ceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCC---C---CCCceEEEECCCC----CcEEEEEEcCCHHH
Confidence 456789999999999988543 22 689999884443221 1 4567788875443 68999999999999
Q ss_pred HHHHHHHHHHH
Q 007304 173 KEAWCKALRLA 183 (608)
Q Consensus 173 KEsWckaLr~a 183 (608)
.+.|..+|+-|
T Consensus 89 ~~~W~~al~~~ 99 (99)
T cd00900 89 AQEWVEALQQA 99 (99)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 20
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=95.57 E-value=0.079 Score=47.26 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=54.4
Q ss_pred eeeeEeeCceEEEecC--CCC-eeEEecCCcE-EEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhHH
Q 007304 99 RKYAKIKHRALILTST--DGS-QTSFPLKGCE-IKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKE 174 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~--dg~-~~~i~l~~C~-v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKE 174 (608)
+|+.+|+++.|+-+.. |.. ..+|.|..|. ...|.....++-.=...|.+.|..+ .+++||.+||-=|.+
T Consensus 18 kRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-------~Rty~l~a~s~~e~~ 90 (103)
T cd01251 18 KRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-------ERKFLFACETEQDRR 90 (103)
T ss_pred eEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-------CeEEEEECCCHHHHH
Confidence 5889999999999976 332 4689997543 1222221112101012357888765 579999999999999
Q ss_pred HHHHHHHHHhc
Q 007304 175 AWCKALRLASC 185 (608)
Q Consensus 175 sWckaLr~as~ 185 (608)
.|-+||+-|-.
T Consensus 91 ~Wi~ai~~v~~ 101 (103)
T cd01251 91 EWIAAFQNVLS 101 (103)
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 21
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=95.56 E-value=0.087 Score=47.21 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=57.1
Q ss_pred ccceeeeEeeCceEEEecC--C---CCeeEEecCCcEEEEEeCCCccc-cccccccCeeEecCCcccccCceeEEEEecc
Q 007304 96 YPVRKYAKIKHRALILTST--D---GSQTSFPLKGCEIKAVSASSLSS-RKWAKRFPIKVENKSSVLYNGSKLIYIFLET 169 (608)
Q Consensus 96 ~p~~~~~~lk~~~L~l~~~--d---g~~~~i~l~~C~v~avs~s~~~s-rKwaKkfpIkve~~~~~iy~~sk~~~~y~et 169 (608)
.--+|+-+|+++.|.-.+. | ..-..|+|.+|.+.......... -+-.++|.++|.+++ +++||.++|
T Consensus 20 nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-------r~~yl~A~s 92 (106)
T cd01238 20 NYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-------GTLYVFAPT 92 (106)
T ss_pred CceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-------CeEEEEcCC
Confidence 3445789999999988765 2 23579999999765543322111 012357888888654 589999999
Q ss_pred chhHHHHHHHHHH
Q 007304 170 SWEKEAWCKALRL 182 (608)
Q Consensus 170 ~~EKEsWckaLr~ 182 (608)
-=|.+.|-+||+.
T Consensus 93 ~~er~~WI~ai~~ 105 (106)
T cd01238 93 EELRKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
No 22
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.51 E-value=0.04 Score=51.38 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=56.6
Q ss_pred eeeeEeeCceEEEecC--C----CCeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccc-------cCc---ee
Q 007304 99 RKYAKIKHRALILTST--D----GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLY-------NGS---KL 162 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~--d----g~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy-------~~s---k~ 162 (608)
||+++|+|+.|+.... | .+...|+|.+|.+..|-..+.....-..-|=|.+.+++.+-- .+. ++
T Consensus 21 RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~ 100 (122)
T cd01263 21 RRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERL 100 (122)
T ss_pred EEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEE
Confidence 4899999999998853 3 235799999999998865443333233335566666652210 111 22
Q ss_pred E-EEEeccchhHHHHHHHHHHH
Q 007304 163 I-YIFLETSWEKEAWCKALRLA 183 (608)
Q Consensus 163 ~-~~y~et~~EKEsWckaLr~a 183 (608)
. ||=+||.=|.+.|++||.-|
T Consensus 101 ~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 101 RVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEEEecCCHHHHHHHHHHHhcC
Confidence 2 34489999999999999754
No 23
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=95.44 E-value=0.084 Score=46.25 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=50.3
Q ss_pred eeeeEeeCceEEEecC--CC---CeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhH
Q 007304 99 RKYAKIKHRALILTST--DG---SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~--dg---~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EK 173 (608)
+|+-+|+++.|.-... |. ....|+|.+|.|.+.. .+ ++-+.|. -.+.+++||-+|+--|+
T Consensus 17 ~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~-----~~----~~~F~i~------~~~~r~~~L~A~s~~e~ 81 (91)
T cd01247 17 DRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHE-----FD----ENRFDIS------VNENVVWYLRAENSQSR 81 (91)
T ss_pred eEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCC-----CC----CCEEEEE------eCCCeEEEEEeCCHHHH
Confidence 4678899999987755 32 2589999999877542 22 2333333 12358999999999999
Q ss_pred HHHHHHHHH
Q 007304 174 EAWCKALRL 182 (608)
Q Consensus 174 EsWckaLr~ 182 (608)
+.|.+||..
T Consensus 82 ~~Wi~al~~ 90 (91)
T cd01247 82 LLWMDSVVR 90 (91)
T ss_pred HHHHHHHhh
Confidence 999999863
No 24
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.43 E-value=0.11 Score=46.14 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=55.7
Q ss_pred cceeeeEeeCceEEEecC----CCC----eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEec
Q 007304 97 PVRKYAKIKHRALILTST----DGS----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (608)
Q Consensus 97 p~~~~~~lk~~~L~l~~~----dg~----~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~e 168 (608)
|-.||..|-+++|+...+ .|. ...|+|.+|.|..... + ...+...|..++ +.+++|++
T Consensus 18 ~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~---~----~~~~~F~I~~~~-------rsf~l~A~ 83 (101)
T cd01219 18 TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN---L----ERPHSFLVSGKQ-------RCLELQAR 83 (101)
T ss_pred ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC---C----CcCceEEEecCC-------cEEEEEcC
Confidence 445888898888888764 122 2579999999986532 1 234556666554 79999999
Q ss_pred cchhHHHHHHHHHHHhc
Q 007304 169 TSWEKEAWCKALRLASC 185 (608)
Q Consensus 169 t~~EKEsWckaLr~as~ 185 (608)
|.-||+.|..||..|..
T Consensus 84 s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 84 TQKEKNDWVQAIFSIID 100 (101)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999998863
No 25
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=94.77 E-value=0.22 Score=42.99 Aligned_cols=77 Identities=8% Similarity=0.151 Sum_probs=51.6
Q ss_pred eeeeEee--CceEEEecC--CCC-eeEEecCCcEEEEEeCCC--ccccccccccCeeEecCCcccccCceeEEEEeccch
Q 007304 99 RKYAKIK--HRALILTST--DGS-QTSFPLKGCEIKAVSASS--LSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSW 171 (608)
Q Consensus 99 ~~~~~lk--~~~L~l~~~--dg~-~~~i~l~~C~v~avs~s~--~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~ 171 (608)
+|+.+|+ ++.|..... |.. ..+|+|.+|....+.... .|. .=.+.+-+.+. -+.+++||++|+.=
T Consensus 17 kRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~-~~~~~~~f~i~-------t~~r~~~~~a~s~~ 88 (101)
T cd01235 17 PRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPK-HTSRKGFFDLK-------TSKRTYNFLAENIN 88 (101)
T ss_pred ceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCC-CCCCceEEEEE-------eCCceEEEECCCHH
Confidence 4789998 448888765 222 479999998766653311 110 00122334443 34578999999999
Q ss_pred hHHHHHHHHHHH
Q 007304 172 EKEAWCKALRLA 183 (608)
Q Consensus 172 EKEsWckaLr~a 183 (608)
|.+.|-.|||.+
T Consensus 89 e~~~Wi~ai~~~ 100 (101)
T cd01235 89 EAQRWKEKIQQC 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999975
No 26
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.95 E-value=0.3 Score=44.33 Aligned_cols=94 Identities=19% Similarity=0.198 Sum_probs=62.7
Q ss_pred ccceEEEeCCCCCC-cc-ccchHHHhhccceeeccceeeeEeeC-ceEEEe-cC--C-CCeeEEecCCcEEEEEeCCCcc
Q 007304 65 KQGYVWVLEPEKVP-KE-KFSKEQKKKKEFLEVYPVRKYAKIKH-RALILT-ST--D-GSQTSFPLKGCEIKAVSASSLS 137 (608)
Q Consensus 65 ~~g~~wv~~~~~~~-k~-k~~k~~k~~k~~~ev~p~~~~~~lk~-~~L~l~-~~--d-g~~~~i~l~~C~v~avs~s~~~ 137 (608)
++|.+-+.++++-- ++ +.-|-=| ||.-+|++ +.|+-. +. | -...+|.|..|..+. .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~Wk-----------rRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~-~~~--- 65 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQ-----------RRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVV-DAE--- 65 (104)
T ss_pred CcceeEEcCCCCcccccceeecccc-----------ceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEe-ecc---
Confidence 46778888876431 11 1122212 47889984 566654 22 2 237899999998643 332
Q ss_pred ccccccccCeeEecCCcccccCceeEEEEeccchhHHHHHHHHH
Q 007304 138 SRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALR 181 (608)
Q Consensus 138 srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEsWckaLr 181 (608)
....+.|.|.|..++ .++||.+||-=|.+.|-.+|-
T Consensus 66 -~~~~~~~~f~I~tp~-------R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 66 -ARTGQKFSICILTPD-------KEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred -cccCCccEEEEECCC-------ceEEEEeCCHHHHHHHHHHHH
Confidence 233467889988665 789999999999999999884
No 27
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.88 E-value=0.33 Score=42.59 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=50.0
Q ss_pred eeeeEeeCc--eEEEecC--C-CCeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhH
Q 007304 99 RKYAKIKHR--ALILTST--D-GSQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (608)
Q Consensus 99 ~~~~~lk~~--~L~l~~~--d-g~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EK 173 (608)
+|..+|+++ .|+-... | ....+|+|.+|.+..... . +++-+.|.. ..++++|.+|+-=|.
T Consensus 19 kRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~----~----~~~~F~i~t-------~~r~y~l~A~s~~e~ 83 (95)
T cd01265 19 SRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPR----E----EKGRFEIHS-------NNEVIALKASSDKQM 83 (95)
T ss_pred eEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCC----C----CCCEEEEEc-------CCcEEEEECCCHHHH
Confidence 467889854 6777655 2 226899999998764322 1 234445543 457899999999999
Q ss_pred HHHHHHHHHH
Q 007304 174 EAWCKALRLA 183 (608)
Q Consensus 174 EsWckaLr~a 183 (608)
+.|-+||..|
T Consensus 84 ~~Wi~al~~~ 93 (95)
T cd01265 84 NYWLQALQSK 93 (95)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 28
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.87 E-value=0.37 Score=43.76 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=55.5
Q ss_pred eeeEeeCceEEEecC--CCC----eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhH
Q 007304 100 KYAKIKHRALILTST--DGS----QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (608)
Q Consensus 100 ~~~~lk~~~L~l~~~--dg~----~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EK 173 (608)
||.-|=+.+|+.... .|. +..|+|+||.|..+... +.-++..+|.++ .|.+.+|++|.-||
T Consensus 21 R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~------~~~~n~f~I~~~-------~kSf~v~A~s~~eK 87 (104)
T cd01218 21 RQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDD------GIERNGWIIKTP-------TKSFAVYAATETEK 87 (104)
T ss_pred EEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCc------ccccceEEEecC-------CeEEEEEcCCHHHH
Confidence 566666777776532 222 46889999999877652 344677777654 48999999999999
Q ss_pred HHHHHHHHHHhcc
Q 007304 174 EAWCKALRLASCE 186 (608)
Q Consensus 174 EsWckaLr~as~~ 186 (608)
..|.++|-.|...
T Consensus 88 ~eWl~~i~~ai~~ 100 (104)
T cd01218 88 REWMLHINKCVTD 100 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 29
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.80 E-value=0.29 Score=44.01 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=53.9
Q ss_pred eeeEeeC----ceEEEecCCCC---eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchh
Q 007304 100 KYAKIKH----RALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (608)
Q Consensus 100 ~~~~lk~----~~L~l~~~dg~---~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~E 172 (608)
++..|.+ +.|+++..-+. ..-|+|.+|.|..|=. .++.|.|...|-.++. ..++|+.+++ =|
T Consensus 19 rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~d-----s~~~r~~cFel~~~~~-----~~~y~~~a~~-~e 87 (98)
T cd01245 19 LYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHD-----SLFGRPNCFQIVERAL-----PTVYYSCRSS-EE 87 (98)
T ss_pred eEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccc-----cccCCCeEEEEecCCC-----CeEEEEeCCH-HH
Confidence 5667765 88888855222 3468999998887744 4567777777775554 2577999999 99
Q ss_pred HHHHHHHHHHH
Q 007304 173 KEAWCKALRLA 183 (608)
Q Consensus 173 KEsWckaLr~a 183 (608)
++.|-++||.+
T Consensus 88 r~~Wi~~l~~~ 98 (98)
T cd01245 88 RDKWIESLQAQ 98 (98)
T ss_pred HHHHHHHHhcC
Confidence 99999999863
No 30
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.46 E-value=0.48 Score=42.40 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=52.5
Q ss_pred eeeEeeCceEEEecC---CC----CeeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchh
Q 007304 100 KYAKIKHRALILTST---DG----SQTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (608)
Q Consensus 100 ~~~~lk~~~L~l~~~---dg----~~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~E 172 (608)
||.-|=+.+|+.... |+ .+..|+|.||.|.-+-.. +...|...+.++ .|.+.+|+.|--|
T Consensus 19 R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~------~~~~~~F~I~~~-------~ks~~l~A~s~~E 85 (99)
T cd01220 19 RMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE------WGVPHCFTIFGG-------QCAITVAASTRAE 85 (99)
T ss_pred EEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCC------cCCceeEEEEcC-------CeEEEEECCCHHH
Confidence 455555555555432 34 247899999999877552 344566666644 5889999999999
Q ss_pred HHHHHHHHHHHhc
Q 007304 173 KEAWCKALRLASC 185 (608)
Q Consensus 173 KEsWckaLr~as~ 185 (608)
|..|-++|..|..
T Consensus 86 k~~Wi~~i~~aI~ 98 (99)
T cd01220 86 KEKWLADLSKAIA 98 (99)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998854
No 31
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=93.30 E-value=0.35 Score=43.25 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=51.4
Q ss_pred ceeeeEeeCceE-------EEecC--CCC-eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEe
Q 007304 98 VRKYAKIKHRAL-------ILTST--DGS-QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFL 167 (608)
Q Consensus 98 ~~~~~~lk~~~L-------~l~~~--dg~-~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~ 167 (608)
-+|+.+|+++.| ..... |.. ..+|.|..|.++-.+... ..+.-.+.|.+.+.. ..+++||.+
T Consensus 20 krRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~-~~~~~~~~~~f~i~t-------~~r~y~l~A 91 (108)
T cd01266 20 VRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLC-TAGNCIFGYGFDIET-------IVRDLYLVA 91 (108)
T ss_pred EEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccc-cccCcccceEEEEEe-------CCccEEEEE
Confidence 368999999874 55533 222 589999999875433111 111112335566653 357899999
Q ss_pred ccchhHHHHHHHHHH
Q 007304 168 ETSWEKEAWCKALRL 182 (608)
Q Consensus 168 et~~EKEsWckaLr~ 182 (608)
||-=|.+.|-+++|-
T Consensus 92 ~s~ee~~~Wi~~I~~ 106 (108)
T cd01266 92 KNEEEMTLWVNCICK 106 (108)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999974
No 32
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.26 E-value=0.58 Score=43.33 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=57.3
Q ss_pred eeeeEeeCceEEEecCCC--------C--eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEec
Q 007304 99 RKYAKIKHRALILTSTDG--------S--QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg--------~--~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~e 168 (608)
..||+|+|+.|++..... . +..|.|.+|.+.+...- + .|++=++|.. ...+.++|.+.
T Consensus 28 ~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy---~---Kr~~VF~L~~------~~g~~~lfqA~ 95 (117)
T cd01230 28 MFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDY---S---KKPHVFRLRT------ADWREFLFQTS 95 (117)
T ss_pred EEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccc---c---CCCcEEEEEc------CCCCEEEEECC
Confidence 469999999999975532 1 46899999986655541 1 3455566763 34578899999
Q ss_pred cchhHHHHHHHHHHHhcc
Q 007304 169 TSWEKEAWCKALRLASCE 186 (608)
Q Consensus 169 t~~EKEsWckaLr~as~~ 186 (608)
+-=|-+.|..+++.||..
T Consensus 96 ~~ee~~~Wi~~I~~~~~~ 113 (117)
T cd01230 96 SLKELQSWIERINVVAAA 113 (117)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999864
No 33
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.16 E-value=0.86 Score=40.52 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=42.5
Q ss_pred eeeeEee-CceEEEe-cC--CCCeeEEecCC-----cEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEecc
Q 007304 99 RKYAKIK-HRALILT-ST--DGSQTSFPLKG-----CEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLET 169 (608)
Q Consensus 99 ~~~~~lk-~~~L~l~-~~--dg~~~~i~l~~-----C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et 169 (608)
+|+++|+ |+.|+.. +. |.....|+|.+ |++..+.. .+.| .|.|...+.+..+.+ +||+||
T Consensus 19 ~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~----~~~~--~F~i~~~~~~~~~~r-----~f~a~s 87 (102)
T cd01241 19 PRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTER----PRPN--TFIIRCLQWTTVIER-----TFHVES 87 (102)
T ss_pred eEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccC----CCcc--eEEEEeccCCcccCE-----EEEeCC
Confidence 4789999 7776544 32 22222455555 44444421 2222 355542221222222 568999
Q ss_pred chhHHHHHHHHHHHh
Q 007304 170 SWEKEAWCKALRLAS 184 (608)
Q Consensus 170 ~~EKEsWckaLr~as 184 (608)
--|.+.|-+|||.++
T Consensus 88 ~ee~~eWi~ai~~v~ 102 (102)
T cd01241 88 PEEREEWIHAIQTVA 102 (102)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998763
No 34
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=90.73 E-value=0.55 Score=42.64 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.2
Q ss_pred CcccccCceeEEEEeccchhHHHHHHHHHHH
Q 007304 153 SSVLYNGSKLIYIFLETSWEKEAWCKALRLA 183 (608)
Q Consensus 153 ~~~iy~~sk~~~~y~et~~EKEsWckaLr~a 183 (608)
...|.-+.|.++||.||-=|.+.|..||++|
T Consensus 82 ~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 82 VFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp EEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 4445788999999999999999999999987
No 35
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.00 E-value=0.65 Score=43.59 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007304 6 VGLIIGAIGVVAVEAAAVLYFIYKLNQK 33 (608)
Q Consensus 6 ~~f~~g~~~l~~~e~~~~~~~~~rl~~~ 33 (608)
.|+++|++|-++.=+++++|+|||++.|
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444456899999999966
No 36
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.91 E-value=3.1 Score=39.26 Aligned_cols=96 Identities=20% Similarity=0.210 Sum_probs=61.7
Q ss_pred ccchHHHhhccceeeccceeeeEeeCceEEEecC--C--CC-----eeEEec--CCcEEEEEeCCCccccccccccC--e
Q 007304 81 KFSKEQKKKKEFLEVYPVRKYAKIKHRALILTST--D--GS-----QTSFPL--KGCEIKAVSASSLSSRKWAKRFP--I 147 (608)
Q Consensus 81 k~~k~~k~~k~~~ev~p~~~~~~lk~~~L~l~~~--d--g~-----~~~i~l--~~C~v~avs~s~~~srKwaKkfp--I 147 (608)
|.||-.+.||. =.|+||++.+..|||.|. | .. .-+|++ ..++|.+|.++.+-.-. .|--| +
T Consensus 9 kvP~~~~~krG-----W~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~-~kDiP~If 82 (122)
T cd01243 9 KIPKPGGVKKG-----WQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHAS-KKDIPCIF 82 (122)
T ss_pred eccCCCCcccC-----ceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccC-cccCCeEE
Confidence 44555444442 357899999999999985 2 21 145788 68999999998874211 11222 2
Q ss_pred eEecCCcccccCceeEEEEeccchhHHHHHHHHHH
Q 007304 148 KVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRL 182 (608)
Q Consensus 148 kve~~~~~iy~~sk~~~~y~et~~EKEsWckaLr~ 182 (608)
+|+..--.-+--.-..||-+|+==||.-|-.||-.
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~ 117 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSE 117 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence 44422111122346788889999999999999853
No 37
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=80.03 E-value=7.4 Score=36.06 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=43.2
Q ss_pred eEEecCCcEEEEEeCCCcc--ccccccccCeeEecCCcccccCceeEEEEeccchhHHHHHHHHHH
Q 007304 119 TSFPLKGCEIKAVSASSLS--SRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRL 182 (608)
Q Consensus 119 ~~i~l~~C~v~avs~s~~~--srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEsWckaLr~ 182 (608)
+.|.|..|.|.-+.-+... +-+| ++..||.+.+ +.+.+.||+.|-=||-.|-+||-+
T Consensus 47 gri~l~~~~I~d~~Dg~~~~~~~~~--knafkl~~~~-----~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 47 GRIDLDRCEVVNIRDGKMFSSGHTI--KNSLKIYSES-----TDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EEEEcccEEEEECCCCccccCCcee--EEEEEEEEcC-----CCeEEEEEECCHHHHHHHHHHHHH
Confidence 6899999999999775443 2233 4566666543 468899999999999999999854
No 38
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=77.08 E-value=0.85 Score=38.49 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=0.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007304 4 FFVGLIIGAIGVVAVEAAAVLYFIYKLNQK 33 (608)
Q Consensus 4 ~~~~f~~g~~~l~~~e~~~~~~~~~rl~~~ 33 (608)
.+.|.+.|+++-+++=++.+++++.|++.|
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkk 39 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKK 39 (64)
T ss_dssp ---------------------------S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356667777666666677788888999876
No 39
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.01 E-value=16 Score=33.61 Aligned_cols=77 Identities=12% Similarity=0.207 Sum_probs=51.3
Q ss_pred eeeeEeeCceEEEecC-CCC--eeEEecC-CcEEEEEeCC------CccccccccccCeeEecCCcccccCceeEEEEec
Q 007304 99 RKYAKIKHRALILTST-DGS--QTSFPLK-GCEIKAVSAS------SLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLE 168 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~-dg~--~~~i~l~-~C~v~avs~s------~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~e 168 (608)
+|..+|++..|...+. ++. -.+|.|+ ++.|..--.. ..+. +=.++|.|+|+.+ ++++.|=++
T Consensus 35 kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~-~~~~~~~~~i~t~-------~R~~~l~a~ 106 (121)
T cd01254 35 KRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKD-ITGLRHGLKITNS-------NRSLKLKCK 106 (121)
T ss_pred ceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccc-cCCCceEEEEEcC-------CcEEEEEeC
Confidence 5788899999977655 442 3466663 4544432211 0011 1245788998854 467889999
Q ss_pred cchhHHHHHHHHHHH
Q 007304 169 TSWEKEAWCKALRLA 183 (608)
Q Consensus 169 t~~EKEsWckaLr~a 183 (608)
|..|.+.|..+++.|
T Consensus 107 s~~~~~~Wi~~i~~a 121 (121)
T cd01254 107 SSRKLKQWMASIEDA 121 (121)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999876
No 40
>PF15409 PH_8: Pleckstrin homology domain
Probab=66.27 E-value=34 Score=30.61 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=48.5
Q ss_pred eeeeEe--eCceEEEec--CCCC-eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhH
Q 007304 99 RKYAKI--KHRALILTS--TDGS-QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEK 173 (608)
Q Consensus 99 ~~~~~l--k~~~L~l~~--~dg~-~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EK 173 (608)
+||-+| ++++|--.- .|+. +..|++..|.| +++. |.--|-| --|..+.+|=+.+-=+-
T Consensus 16 kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~i-s~~~---------~~~~I~i-------dsg~~i~hLKa~s~~~f 78 (89)
T PF15409_consen 16 KRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVI-SANK---------KSRRIDI-------DSGDEIWHLKAKSQEDF 78 (89)
T ss_pred eEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEE-EecC---------CCCEEEE-------EcCCeEEEEEcCCHHHH
Confidence 678888 888886554 2443 68998888844 3332 1223443 34677899999999999
Q ss_pred HHHHHHHHHH
Q 007304 174 EAWCKALRLA 183 (608)
Q Consensus 174 EsWckaLr~a 183 (608)
+.|..||+.|
T Consensus 79 ~~Wv~aL~~a 88 (89)
T PF15409_consen 79 QRWVSALQKA 88 (89)
T ss_pred HHHHHHHHhc
Confidence 9999999987
No 41
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=62.50 E-value=10 Score=35.69 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hccc
Q 007304 4 FFVGLIIGAIGVVAVEAAAVLYFIYKLNQKT-KKVA 38 (608)
Q Consensus 4 ~~~~f~~g~~~l~~~e~~~~~~~~~rl~~~~-~~~~ 38 (608)
|.++.++|-|..+.+-++|+.+||+|-.|.+ ++|+
T Consensus 84 ~aLp~VIGGLcaL~LaamGA~~LLrR~cRr~arrR~ 119 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAMGAGALLRRCCRRAARRRQ 119 (126)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566667766666777999999999988887 4444
No 42
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=58.70 E-value=70 Score=29.66 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=50.6
Q ss_pred eeeeEeeCceEEEecCCCC--------------eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEE
Q 007304 99 RKYAKIKHRALILTSTDGS--------------QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIY 164 (608)
Q Consensus 99 ~~~~~lk~~~L~l~~~dg~--------------~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~ 164 (608)
.||.-|=|++|++--+++. .+.|.|+++.|.-+..+. .. ++..+|.+.. .+.+-
T Consensus 22 ~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~----~~--knaF~I~~~~------~~s~~ 89 (112)
T cd01261 22 ERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSS----EY--KNAFEIILKD------GNSVI 89 (112)
T ss_pred eEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCc----cc--CceEEEEcCC------CCEEE
Confidence 4666677777777544553 134889998888555432 12 5566666432 45899
Q ss_pred EEeccchhHHHHHHHHHHH
Q 007304 165 IFLETSWEKEAWCKALRLA 183 (608)
Q Consensus 165 ~y~et~~EKEsWckaLr~a 183 (608)
||+.|.=||..|-++|=.|
T Consensus 90 l~Akt~eeK~~Wm~~l~~~ 108 (112)
T cd01261 90 FSAKNAEEKNNWMAALISV 108 (112)
T ss_pred EEECCHHHHHHHHHHHHHH
Confidence 9999999999999998665
No 43
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=53.82 E-value=63 Score=30.24 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCce
Q 007304 366 VGVKSSIQARIQRALSNMRTPSYIGEI 392 (608)
Q Consensus 366 ~~~~~~I~~KIQkKLskIklPsFI~eI 392 (608)
+|..+...+.||++|.++++|.+.++.
T Consensus 3 ~y~~~~~~~~l~~~l~~~~ipdi~~~~ 29 (164)
T PF01273_consen 3 DYANQVGIQILQKELQKIQIPDISGSF 29 (164)
T ss_dssp HHHHHHHHHHHHHHHCC-----EEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCCCccccc
Confidence 356778888999999999999988754
No 44
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=52.89 E-value=18 Score=33.72 Aligned_cols=30 Identities=17% Similarity=0.511 Sum_probs=25.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 007304 2 ISFFVGLIIGAIGVVAVEAAAVLYFI-YKLN 31 (608)
Q Consensus 2 ~~~~~~f~~g~~~l~~~e~~~~~~~~-~rl~ 31 (608)
++++.|.|.|.++.+++|.+=++=.+ ||++
T Consensus 54 ~GL~~GiFvG~la~ALaEvlnv~PIlarRi~ 84 (110)
T PF13782_consen 54 FGLFAGIFVGCLAAALAEVLNVFPILARRIG 84 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45779999999999999999998777 7765
No 45
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=51.40 E-value=1.2e+02 Score=27.76 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=47.0
Q ss_pred eeEeeCceEEEecCC------------CCe-----eEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeE
Q 007304 101 YAKIKHRALILTSTD------------GSQ-----TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLI 163 (608)
Q Consensus 101 ~~~lk~~~L~l~~~d------------g~~-----~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~ 163 (608)
||+|+|+.|+|.... ... ..|.|.+|.....+. =.| |+|=..|.-. .-..+
T Consensus 30 y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~d----Y~K--r~~VFrL~~~------dg~e~ 97 (119)
T PF15410_consen 30 YAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASD----YTK--RKNVFRLRTA------DGSEY 97 (119)
T ss_dssp EEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETT----BTT--CSSEEEEE-T------TS-EE
T ss_pred eEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcc----ccc--CCeEEEEEeC------CCCEE
Confidence 899999999999551 111 249999999888322 123 5666666622 34578
Q ss_pred EEEeccchhHHHHHHHHHHHh
Q 007304 164 YIFLETSWEKEAWCKALRLAS 184 (608)
Q Consensus 164 ~~y~et~~EKEsWckaLr~as 184 (608)
+|=+++--|-..|-.++-.||
T Consensus 98 Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 98 LFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp EEE-SSHHHHHHHHHHHHHH-
T ss_pred EEECCCHHHHHHHHHHHhhhc
Confidence 888999999999999998876
No 46
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=50.63 E-value=85 Score=29.19 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=58.1
Q ss_pred eeeEeeCceEEEecCCCC---eeEEecCCcEEEEEeCCCccccccccccCeeEecC-CcccccCceeEEEEeccchhHHH
Q 007304 100 KYAKIKHRALILTSTDGS---QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENK-SSVLYNGSKLIYIFLETSWEKEA 175 (608)
Q Consensus 100 ~~~~lk~~~L~l~~~dg~---~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~-~~~iy~~sk~~~~y~et~~EKEs 175 (608)
+.-+|.+..|.-+.-|.- -.-|+|+|+.|--|-+. .++| +|..-|.++ .+-+|+..|++=+=.+|-=|-++
T Consensus 22 ~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~g-f~sk----~~~FeLfnpd~rnvykd~k~lel~~~~~e~vds 96 (110)
T cd01256 22 YWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGG-FMSR----NHKFALFYPDGRNVYKDYKQLELGCETLEEVDS 96 (110)
T ss_pred eEEEEecceeeeecccccccccceeeccccEEEeeccc-ccCC----CcEEEEEcCcccccccchheeeecCCCHHHHHH
Confidence 456777888877744332 24789999999999753 3554 477788877 67899999999999999999999
Q ss_pred HHHH
Q 007304 176 WCKA 179 (608)
Q Consensus 176 Wcka 179 (608)
|--.
T Consensus 97 wkas 100 (110)
T cd01256 97 WKAS 100 (110)
T ss_pred HHHH
Confidence 9754
No 47
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=49.97 E-value=22 Score=29.32 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=21.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007304 1 MISFFVGLIIGAIGVVAVEAAAVLYFIYK 29 (608)
Q Consensus 1 ~~~~~~~f~~g~~~l~~~e~~~~~~~~~r 29 (608)
|=.|.-||+.|.++.+++=+.+++-+=+.
T Consensus 1 mkkF~~G~l~G~~~t~aa~a~av~~~kK~ 29 (54)
T PF11240_consen 1 MKKFGKGFLTGVAATLAAIAGAVFTFKKT 29 (54)
T ss_pred CcchhhhHHHhHHHHHHHHHHHHHHHHHH
Confidence 55699999999999888866665544333
No 48
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.31 E-value=31 Score=36.04 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=12.4
Q ss_pred chhhHHHHHHHHHHHH
Q 007304 3 SFFVGLIIGAIGVVAV 18 (608)
Q Consensus 3 ~~~~~f~~g~~~l~~~ 18 (608)
.||.+|++|+++|+++
T Consensus 185 vFL~~lligl~llllv 200 (261)
T KOG1631|consen 185 VFLYILLIGLSLLLLV 200 (261)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3888888888877654
No 49
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.17 E-value=1e+02 Score=28.98 Aligned_cols=99 Identities=18% Similarity=0.338 Sum_probs=63.6
Q ss_pred hhccceEEEeCCCCCCccccchHHHhhccceeeccceeeeEeeCceEEEecCCCCe---eEEecCCc------EEEEEeC
Q 007304 63 YKKQGYVWVLEPEKVPKEKFSKEQKKKKEFLEVYPVRKYAKIKHRALILTSTDGSQ---TSFPLKGC------EIKAVSA 133 (608)
Q Consensus 63 ~~~~g~~wv~~~~~~~k~k~~k~~k~~k~~~ev~p~~~~~~lk~~~L~l~~~dg~~---~~i~l~~C------~v~avs~ 133 (608)
+.++|.++|.+.++-. |.-||+-|=|+.||+-..-|.. .+-.|+.| .|..-..
T Consensus 4 ~~~DGelk~k~~~~~k------------------~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~ 65 (116)
T cd01223 4 PLLDGEVRIKASEDQK------------------TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPS 65 (116)
T ss_pred cccCCceEEeEeccCC------------------CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCc
Confidence 3467888887764311 2358899999998888764321 23455543 3443222
Q ss_pred CCc--cccccccccCeeEecCCcccccCceeEEEEeccchhHHHHHHHHHHHhcc
Q 007304 134 SSL--SSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLASCE 186 (608)
Q Consensus 134 s~~--~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEsWckaLr~as~~ 186 (608)
.+- ++.+|. |.-.+.|+ .|...+-||+.|-=||..|-+||=+|-++
T Consensus 66 ~d~~~~~~~~~--~~f~L~~~-----~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 66 RDTEGRDTRWK--YGFYLAHK-----QGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred cCcccCCcceE--EEEEEEec-----CCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 121 244674 44455554 35667899999999999999999998765
No 50
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=47.65 E-value=18 Score=26.84 Aligned_cols=26 Identities=31% Similarity=0.716 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 007304 174 EAWCKALRLASCEDKKRLEWFTKLNEDFHIY 204 (608)
Q Consensus 174 EsWckaLr~as~~~k~~~~w~~kl~~~f~~y 204 (608)
|+||+.++. |.+-+|+++=..+|..|
T Consensus 4 e~WC~~m~~-----kpK~dWtanea~~fAKh 29 (32)
T PF11216_consen 4 EAWCEDMKE-----KPKGDWTANEAADFAKH 29 (32)
T ss_pred HHHHHHHhh-----CCcccCcHhHHHHHHHh
Confidence 899999974 66778999888877654
No 51
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=46.74 E-value=19 Score=32.79 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=22.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007304 2 ISFFVGLIIGAIGVVAVEAAAVLYFIYKLN 31 (608)
Q Consensus 2 ~~~~~~f~~g~~~l~~~e~~~~~~~~~rl~ 31 (608)
++|+.||+.|-..++++=++++++.+||+.
T Consensus 34 ~~~~~Gi~~~~~l~g~i~g~~~~~~~r~lK 63 (101)
T PRK13707 34 ICIGWGITTSKYLFGIIAAVLVWFGIRKLK 63 (101)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 346677777766777777888888889877
No 52
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.66 E-value=27 Score=28.41 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=6.7
Q ss_pred chhhHHHHHHHHH
Q 007304 3 SFFVGLIIGAIGV 15 (608)
Q Consensus 3 ~~~~~f~~g~~~l 15 (608)
+|+.|+++|.++.
T Consensus 27 ~f~~G~llg~l~~ 39 (68)
T PF06305_consen 27 AFLLGALLGWLLS 39 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555443
No 53
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=45.25 E-value=21 Score=33.85 Aligned_cols=38 Identities=8% Similarity=0.287 Sum_probs=27.1
Q ss_pred ccccCeeEecCCcccccCceeEEEEeccchhHHHHHHHHHHH
Q 007304 142 AKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLA 183 (608)
Q Consensus 142 aKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEsWckaLr~a 183 (608)
...|||++.|-.+.=| .+=||++|--+...||+.+..+
T Consensus 97 ~~~yp~~~~hlG~~~~----~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 97 KSLYPFTFRHLGRKGY----SYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp SSEEEEEE---GGG-E----EEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCccCEEEEEcCCCce----EEEEEeCCHHHHHHHHHHHHhc
Confidence 6789999996554333 3689999999999999998765
No 54
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=43.48 E-value=77 Score=29.29 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=41.5
Q ss_pred eEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhHHHHHHHH
Q 007304 119 TSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKAL 180 (608)
Q Consensus 119 ~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEsWckaL 180 (608)
+.|.|+.|+|....... |||.--|+.+++. .+|-|=+|+=-|...|-.|+
T Consensus 52 e~~~l~sc~~r~~~~~d-------RRFCFei~~~~~~-----~~~~lQA~Se~~~~~Wi~A~ 101 (104)
T cd01249 52 ETLTLKSCSRRKTESID-------KRFCFDVEVEEKP-----GVITMQALSEKDRRLWIEAM 101 (104)
T ss_pred eEEeeeeccccccCCcc-------ceeeEeeeecCCC-----CeEEEEecCHHHHHHHHHhh
Confidence 57899999998777643 7899999888743 46889999999999998876
No 55
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=43.46 E-value=3.6e+02 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCce
Q 007304 366 VGVKSSIQARIQRALSNMRTPSYIGEI 392 (608)
Q Consensus 366 ~~~~~~I~~KIQkKLskIklPsFI~eI 392 (608)
+|.++.....||++|.++++|.+-++.
T Consensus 8 ~y~~~~~~~~l~~~l~~i~iPdi~~~~ 34 (225)
T smart00328 8 DYAAQEGALALQKELPKITIPDIRGDF 34 (225)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCce
Confidence 456778888899999999999887765
No 56
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=43.05 E-value=1.4e+02 Score=27.98 Aligned_cols=79 Identities=14% Similarity=0.308 Sum_probs=49.2
Q ss_pred ceeeeEeeCceEEEecC--CCC----eeEEecCC-cEEEEEeCCCccccccccccC--eeEecCCcccccCceeEEEEec
Q 007304 98 VRKYAKIKHRALILTST--DGS----QTSFPLKG-CEIKAVSASSLSSRKWAKRFP--IKVENKSSVLYNGSKLIYIFLE 168 (608)
Q Consensus 98 ~~~~~~lk~~~L~l~~~--dg~----~~~i~l~~-C~v~avs~s~~~srKwaKkfp--Ikve~~~~~iy~~sk~~~~y~e 168 (608)
.|+|+++.+..|+|.|. |.. ..++++.. |.|.+|.++.+-.- =.|--| ++++.. +.+...||-++
T Consensus 21 ~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a-~~kDiP~IF~I~~~-----~~~~~lllLA~ 94 (112)
T cd01242 21 KKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRA-DAKEIPKIFQILYA-----NEARDLLLLAP 94 (112)
T ss_pred eEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeec-CcccCCeEEEEEeC-----CccceEEEEeC
Confidence 47899999999999985 321 24555433 44555666554110 011111 122211 12688999999
Q ss_pred cchhHHHHHHHHHH
Q 007304 169 TSWEKEAWCKALRL 182 (608)
Q Consensus 169 t~~EKEsWckaLr~ 182 (608)
+==||.-|-.||+-
T Consensus 95 s~~ek~kWV~~L~~ 108 (112)
T cd01242 95 QTDEQNKWVSRLVK 108 (112)
T ss_pred CchHHHHHHHHHHH
Confidence 99999999999973
No 57
>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria.; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide.
Probab=39.75 E-value=4.1e+02 Score=26.77 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCceEEE---EeecCCCCceeeccccccc
Q 007304 367 GVKSSIQARIQRALSNMRTPSYIGEIICT---DIDTGNLPPYVHGMRVLPT 414 (608)
Q Consensus 367 ~~~~~I~~KIQkKLskIklPsFI~eI~Vt---eLDLG~s~P~I~~vr~p~l 414 (608)
+..+.-...+|++|.++..|.+-++..+- .++.+-+-=.|+++.+|..
T Consensus 13 y~~~~~~~~~~~~l~~i~iPdi~~~~~~~~iG~v~~~~s~i~I~~~~lp~s 63 (223)
T cd00025 13 FAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKLPSS 63 (223)
T ss_pred HHHHHHHHHHHHHhhcCCCCCccCccccccccEEEEEEEeEEEEEEecCCC
Confidence 45677778899999999999988876543 4444444445555555543
No 58
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=35.73 E-value=70 Score=27.51 Aligned_cols=26 Identities=19% Similarity=-0.074 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007304 6 VGLIIGAIGVVAVEAAAVLYFIYKLN 31 (608)
Q Consensus 6 ~~f~~g~~~l~~~e~~~~~~~~~rl~ 31 (608)
++|..+++.++++=.++++|+|.++.
T Consensus 27 Gag~Aav~~~~~~~~l~~~~~iG~~L 52 (67)
T PF11511_consen 27 GAGYAAVFFLGLWFLLVALYFIGLLL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56777888888888889999999998
No 59
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=35.64 E-value=65 Score=31.59 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhhhhhccccC
Q 007304 18 VEAAAVLYFIYKLNQKTKKVASF 40 (608)
Q Consensus 18 ~e~~~~~~~~~rl~~~~~~~~~~ 40 (608)
+=.++.||++||..||.+++...
T Consensus 112 lg~~l~fl~~r~ysRkl~~~~~~ 134 (150)
T COG3086 112 LGLALGFLLARRYSRKLAKRTEW 134 (150)
T ss_pred HHHHHHHHHHHHHHHHhhhcccC
Confidence 33455677889999987554433
No 60
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=33.77 E-value=1.8e+02 Score=26.74 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=40.3
Q ss_pred cceeeeEeeCc-eEEEecCCCCe--eEEecCCc-EEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchh
Q 007304 97 PVRKYAKIKHR-ALILTSTDGSQ--TSFPLKGC-EIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWE 172 (608)
Q Consensus 97 p~~~~~~lk~~-~L~l~~~dg~~--~~i~l~~C-~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~E 172 (608)
.-+|+=.|.|+ .||..|+++-+ ++|++..| .|..++. +.|=|..- .++ |.|.+..-.
T Consensus 27 ~kkR~liLTd~PrL~Yvdp~~~~~KGeI~~~~~l~v~~k~~---------~~F~I~tp---------~Rt-Y~l~d~~~~ 87 (104)
T PF14593_consen 27 AKKRQLILTDGPRLFYVDPKKMVLKGEIPWSKELSVEVKSF---------KTFFIHTP---------KRT-YYLEDPEGN 87 (104)
T ss_dssp EEEEEEEEETTTEEEEEETTTTEEEEEE--STT-EEEECSS---------SEEEEEET---------TEE-EEEE-TTS-
T ss_pred EEEEEEEEccCCEEEEEECCCCeECcEEecCCceEEEEccC---------CEEEEECC---------CcE-EEEECCCCC
Confidence 45556667777 78888886663 79999866 7777765 34444332 233 444445445
Q ss_pred HHHHHHHHHHH
Q 007304 173 KEAWCKALRLA 183 (608)
Q Consensus 173 KEsWckaLr~a 183 (608)
-..||+++-.+
T Consensus 88 A~~W~~~I~~~ 98 (104)
T PF14593_consen 88 AQQWVEAIEEV 98 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56699998654
No 61
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=33.69 E-value=47 Score=29.49 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=23.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007304 3 SFFVGLIIGAIGVVAVEAAAVLYFIYKLN 31 (608)
Q Consensus 3 ~~~~~f~~g~~~l~~~e~~~~~~~~~rl~ 31 (608)
+|+.|++.|-+.++++=+++++|.++|+.
T Consensus 29 ~~~~gi~~~~~~~g~i~g~~~~~~~~k~K 57 (95)
T PF07178_consen 29 LFVIGILSGHFLIGLILGIVLWWGYRKFK 57 (95)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46677888877777877888888899987
No 62
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=33.26 E-value=47 Score=31.56 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 007304 10 IGAIGVVAVEAAAVLYFIYKLN 31 (608)
Q Consensus 10 ~g~~~l~~~e~~~~~~~~~rl~ 31 (608)
.|.|+++++=++++.||+||+.
T Consensus 22 ~~~L~lVl~lI~~~aWLlkR~~ 43 (124)
T PRK11486 22 SGALIGIIALILAAAWLVKRLG 43 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4555677777888899999997
No 63
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=30.61 E-value=53 Score=30.00 Aligned_cols=24 Identities=17% Similarity=0.495 Sum_probs=21.8
Q ss_pred CceeEEEEeccchhHHHHHHHHHH
Q 007304 159 GSKLIYIFLETSWEKEAWCKALRL 182 (608)
Q Consensus 159 ~sk~~~~y~et~~EKEsWckaLr~ 182 (608)
..|.+.+|+.|-+||+.|-++++.
T Consensus 69 ~~KSf~~~asS~~Er~eW~~hI~~ 92 (96)
T cd01228 69 NGKSYTFLLSSDYERSEWRESIQK 92 (96)
T ss_pred CCceEEEEecCHHHHHHHHHHHHH
Confidence 589999999999999999998853
No 64
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.58 E-value=27 Score=36.03 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 007304 4 FFVGLIIGAIGVVAVEAAAVLY 25 (608)
Q Consensus 4 ~~~~f~~g~~~l~~~e~~~~~~ 25 (608)
+++|++.|++++++|=++++++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHH
Confidence 6678888888888876555544
No 65
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=38 Score=33.13 Aligned_cols=14 Identities=36% Similarity=0.937 Sum_probs=12.1
Q ss_pred EEEecCCCCCcEEE
Q 007304 549 RLHIKPPPSDQLWF 562 (608)
Q Consensus 549 ~InIpPPPSDRlWy 562 (608)
+||+||||.|+|-|
T Consensus 102 CiHvPpPPpNQIV~ 115 (166)
T COG3495 102 CIHVPPPPPNQIVL 115 (166)
T ss_pred eeecCCcCCCeEEE
Confidence 58999999998766
No 66
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=27.40 E-value=1.1e+02 Score=23.43 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=21.0
Q ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007304 1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIY 28 (608)
Q Consensus 1 ~~~-~~~~f~~g~~~l~~~e~~~~~~~~~ 28 (608)
||- +|.|.++|++-+-++-....-|+=.
T Consensus 1 MvE~lL~GiVLGlipvTl~GlfvaAylQY 29 (37)
T CHL00008 1 MIEVLLFGIVLGLIPITLAGLFVTAYLQY 29 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 443 8899999999888877666666654
No 67
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=27.32 E-value=91 Score=24.23 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 007304 4 FFVGLIIGAIGVVAVEAAAVLYF 26 (608)
Q Consensus 4 ~~~~f~~g~~~l~~~e~~~~~~~ 26 (608)
|+.+++.|.+.+++.=++++.|+
T Consensus 8 fl~Sl~aG~~iVv~~i~~ali~V 30 (39)
T PF06596_consen 8 FLLSLVAGAVIVVIPIAGALIFV 30 (39)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhheEEE
Confidence 78888888865555544444443
No 68
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=27.08 E-value=1.2e+02 Score=23.37 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=20.9
Q ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007304 1 MIS-FFVGLIIGAIGVVAVEAAAVLYFIY 28 (608)
Q Consensus 1 ~~~-~~~~f~~g~~~l~~~e~~~~~~~~~ 28 (608)
||- +|.|.++|++-+-++-....-|+=.
T Consensus 1 MvEplL~GiVLGlipiTl~GlfvaAylQY 29 (37)
T PRK00665 1 MIEPLLCGIVLGLIPVTLAGLFVAAWNQY 29 (37)
T ss_pred CcchhhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 443 8899999999888777666666653
No 69
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=25.02 E-value=78 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=14.3
Q ss_pred Ccchh-hHHHHHHHHHHHHHHHHHHHHHH
Q 007304 1 MISFF-VGLIIGAIGVVAVEAAAVLYFIY 28 (608)
Q Consensus 1 ~~~~~-~~f~~g~~~l~~~e~~~~~~~~~ 28 (608)
||.|. +.++.|++++.+ .++++|+.+
T Consensus 1 M~~F~~P~~L~~Llllp~--~i~~~~~~~ 27 (77)
T PF07584_consen 1 MFSFLNPWYLWLLLLLPL--PIIIHYFLR 27 (77)
T ss_pred CcchHhHHHHHHHHHHHH--HHHHHHHhc
Confidence 67777 666666665444 334444433
No 70
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=24.54 E-value=38 Score=32.59 Aligned_cols=20 Identities=10% Similarity=0.587 Sum_probs=13.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007304 2 ISFFVGLIIGAIGVVAVEAAAVLYFIYK 29 (608)
Q Consensus 2 ~~~~~~f~~g~~~l~~~e~~~~~~~~~r 29 (608)
++++.|||+|+++ ++||++.
T Consensus 94 ~G~liGff~g~~~--------~~~L~~~ 113 (140)
T PF13373_consen 94 WGLLIGFFFGLFS--------LFWLLRE 113 (140)
T ss_pred HHHHHHHHHHHHh--------HHHHhhc
Confidence 5678888888765 4566653
No 71
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=23.32 E-value=1e+02 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=17.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 007304 2 ISFFVGLIIGAIGVVAVEAAAVLY 25 (608)
Q Consensus 2 ~~~~~~f~~g~~~l~~~e~~~~~~ 25 (608)
||+|-||++|++.+++.=.+..++
T Consensus 50 iGIlYG~viGlli~~i~~~~~~~~ 73 (77)
T PRK01026 50 IGILYGLVIGLLIVLVYIILSPIF 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999877665555444
No 72
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=22.90 E-value=1.2e+02 Score=23.27 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007304 4 FFVGLIIGAIGVVAVEAAAVLYFIY 28 (608)
Q Consensus 4 ~~~~f~~g~~~l~~~e~~~~~~~~~ 28 (608)
.|.|.++|++.+.++-....-|+-.
T Consensus 5 lL~GiVlGli~vtl~Glfv~Ay~QY 29 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLAGLFVAAYLQY 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHH
Confidence 7899999999988877766666654
No 73
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=22.78 E-value=96 Score=27.76 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=10.0
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 007304 3 SFFVGLIIGAIGVVAVEAA 21 (608)
Q Consensus 3 ~~~~~f~~g~~~l~~~e~~ 21 (608)
+|+.|+++|...++++=++
T Consensus 29 ~~~~Gi~~~~~l~g~~lg~ 47 (95)
T TIGR02762 29 LFGIGILSGKALIGLILGA 47 (95)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 4556666665544444333
No 74
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.16 E-value=94 Score=28.72 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 007304 3 SFFVGLIIGAIGVVAVEAAAV 23 (608)
Q Consensus 3 ~~~~~f~~g~~~l~~~e~~~~ 23 (608)
+||+|+++|+|.+-++=++++
T Consensus 18 ~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 18 PFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 589999998888776655543
No 75
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.98 E-value=49 Score=31.05 Aligned_cols=11 Identities=55% Similarity=0.957 Sum_probs=4.8
Q ss_pred chhhHHHHHHH
Q 007304 3 SFFVGLIIGAI 13 (608)
Q Consensus 3 ~~~~~f~~g~~ 13 (608)
+|++||++|++
T Consensus 5 ~lvvG~iiG~~ 15 (128)
T PF06295_consen 5 GLVVGLIIGFL 15 (128)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 76
>PRK09459 pspG phage shock protein G; Reviewed
Probab=20.98 E-value=1.6e+02 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHH------HHHHHHHHHHHHHhh
Q 007304 3 SFFVGLIIGAIGVV------AVEAAAVLYFIYKLN 31 (608)
Q Consensus 3 ~~~~~f~~g~~~l~------~~e~~~~~~~~~rl~ 31 (608)
+++..|++|.++++ ++=++.+.|++|...
T Consensus 31 a~~vM~l~Gm~~lviKLLPWLil~~v~vW~~r~~~ 65 (76)
T PRK09459 31 ATLVMFLGGMFALMIKLLPWLLLAVVVVWVIRAIK 65 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777888888876 356777888888766
No 77
>PF05550 Peptidase_C53: Pestivirus Npro endopeptidase C53; InterPro: IPR008751 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C53 (clan C-). The active site residues occur in the order E, H, C in the sequence which is unlike that in any other family. They are unique to pestiviruses. The N-terminal cysteine peptidase (Npro) encoded by the bovine viral diarrhoea virus genome is responsible for the self-cleavage that releases the N terminus of the core protein. This unique protease is dispensable for viral replication, and its coding region can be replaced by a ubiquitin gene directly fused in frame to the core [, , , ].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=20.22 E-value=1.2e+02 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=34.8
Q ss_pred cceeeccceeeeEeeCceEEEecCCCC--eeEEecCCcEEE
Q 007304 91 EFLEVYPVRKYAKIKHRALILTSTDGS--QTSFPLKGCEIK 129 (608)
Q Consensus 91 ~~~ev~p~~~~~~lk~~~L~l~~~dg~--~~~i~l~~C~v~ 129 (608)
.=||.+-.--+|..--++=-.+++||. |.-+|++||-++
T Consensus 101 APLElf~e~~~CEvTkriGRvTGSDgkLYHiyvC~DgCIll 141 (168)
T PF05550_consen 101 APLELFTETQMCEVTKRIGRVTGSDGKLYHIYVCIDGCILL 141 (168)
T ss_pred chHHhhcccceEeecceEEEEECCCCCEEEEEEeccceEEe
Confidence 578999889999999999999999999 788999999774
No 78
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=20.13 E-value=2.7e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=40.7
Q ss_pred eeEEecCCcEEEEEeCCCccccccccccCeeEecCCcccccCceeEEEEeccchhHHHHHHHHHHHh
Q 007304 118 QTSFPLKGCEIKAVSASSLSSRKWAKRFPIKVENKSSVLYNGSKLIYIFLETSWEKEAWCKALRLAS 184 (608)
Q Consensus 118 ~~~i~l~~C~v~avs~s~~~srKwaKkfpIkve~~~~~iy~~sk~~~~y~et~~EKEsWckaLr~as 184 (608)
+..++|++=.|+-|..+.- =|+.+|+-.+ .+.+.+++||.-||-.|-..|..|-
T Consensus 45 ~~~~~L~~i~V~ni~D~~~------~kNafki~t~-------~~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 45 ESTYSLNSVAVVNVKDREN------AKKVLKLLIF-------PESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred EEEEehHHeEEEecCCCcC------cCceEEEEeC-------CccEEEEeCCHHHHHHHHHHHHHHh
Confidence 4577888888887766541 3677777643 3556789999999999999998874
Done!