BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007306
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 459
L+GHQ + + S +L + SS DA + +WD K+ + S G V T+
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQ-----IKSIDAGPVDAWTLA- 129
Query: 460 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518
F PD +L + H G+++++ + L D I YS DGK +
Sbjct: 130 ---FSPDSQYLATGTHVGKVNIFGVESGKKEYSL--DTRGKFILSIAYSPDGKYLASGAI 184
Query: 519 SGHVKVFDTSTLEL 532
G + +FD +T +L
Sbjct: 185 DGIINIFDIATGKL 198
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 375 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 435 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLV 493
K L + HS V+ + F+ D + + S ++G +++ + L+
Sbjct: 162 TGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 212
Query: 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
D + P+++ +S +GK I + +K++D S
Sbjct: 213 DDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 246
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 145 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 191
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 192 SYDGLCRIWDTAS 204
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
+C K L + + V+ + F+ D + + S ++G +++ + L
Sbjct: 140 K--TGMCLKTLPA-------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGL 451
K + + GH+ I+ +A+S N+LVS+ D L +WD K L + HS F
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 452 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 511
P++ ++ F + + + + G + +P D P++ ++ DG
Sbjct: 119 NPQSNLIVSGSFD-ESVRIWDVKTGMC-----------LKTLPAHSD-PVSAVHFNRDGS 165
Query: 512 CIYVSCKSGHVKVFDTST 529
I S G +++DT++
Sbjct: 166 LIVSSSYDGLCRIWDTAS 183
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 375 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 435 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLV 493
K L + HS V+ + F+ D + + S ++G +++ + L+
Sbjct: 160 TGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
D + P+++ +S +GK I + +K++D S
Sbjct: 211 DDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 244
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 143 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 189
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 190 SYDGLCRIWDTAS 202
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 263 VRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 321
+R I H + ++++ + T KLW W++N +LE Q ++ VM +A
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAF 148
Query: 322 DPKDSISCFAL----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLF 377
+PKD S FA R ++S G F+L T Q Y+ L +
Sbjct: 149 NPKDP-STFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYM 201
Query: 378 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 437
DD +I + TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 263 VRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA 321
+R I H + ++++ + T KLW W++N +LE Q ++ VM +A
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAF 148
Query: 322 DPKDSISCFAL----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLF 377
+PKD S FA R ++S G F+L T Q Y+ L +
Sbjct: 149 NPKDP-STFASGCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYM 201
Query: 378 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 437
DD +I + TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 143 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGL 451
K + + GH+ I+ +A+S N+LVS+ D L +WD K L + HS F
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 121
Query: 452 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 511
P++ ++ F + + + + G+ + +P D P++ ++ DG
Sbjct: 122 NPQSNLIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGS 168
Query: 512 CIYVSCKSGHVKVFDTST 529
I S G +++DT++
Sbjct: 169 LIVSSSYDGLCRIWDTAS 186
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
+C K L + + V+ + F+ D + + S ++G +++ + L
Sbjct: 140 K--TGMCLKTLPA-------HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 191 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSFD-ESVRIWDVKTGMC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 375 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 435 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLV 493
K L + HS V+ + F+ D + + S ++G +++ + L+
Sbjct: 155 TGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
D + P+++ +S +GK I + +K++D S
Sbjct: 206 DDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 138 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 184
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 185 SYDGLCRIWDTAS 197
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 143 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 127 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 173
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 174 SYDGLCRIWDTAS 186
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 133 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 184 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 117 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 163
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 164 SYDGLCRIWDTAS 176
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 142 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 193 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 126 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 172
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 173 SYDGLCRIWDTAS 185
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 143 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 194 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 127 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 173
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 174 SYDGLCRIWDTAS 186
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 375 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 435 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLV 493
K L + HS V+ + F+ D + + S ++G +++ + L+
Sbjct: 141 TGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
D + P+++ +S +GK I + +K++D S
Sbjct: 192 DDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSF-DESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 138 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 189 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 122 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 168
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 169 SYDGLCRIWDTAS 181
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 137 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 188 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 121 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 167
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 168 SYDGLCRIWDTAS 180
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 137 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 188 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 121 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 167
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 168 SYDGLCRIWDTAS 180
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQL 492
K L + HS V+ + F+ D + + S ++G +++ + L
Sbjct: 136 KTGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+ D + P+++ +S +GK I + +K++D S
Sbjct: 187 IDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 120 LIVSGSFD-ESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 166
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 167 SYDGLCRIWDTAS 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 375 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 435 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLV 493
K L + HS V+ + F+ D + + S ++G +++ + L+
Sbjct: 141 TGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
D + P+++ +S +GK I + +K++D S
Sbjct: 192 DDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSF-DESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 273 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 332
++++ + T KLW W++N +LE Q ++ VM +A +PKD S FA
Sbjct: 111 YVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAFNPKDP-STFAS 158
Query: 333 ----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILV 388
R ++S G F+L T Q Y+ L + DD +I +
Sbjct: 159 GCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYMITASDDLTIKI 212
Query: 389 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 437
TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 375 DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434
+L DD ++ + + K LKGH N + C ++ N++VS D + +WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 435 GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLV 493
K L + HS V+ + F+ D + + S ++G +++ + L+
Sbjct: 141 TGKCLKTLPAHS---------DPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
D + P+++ +S +GK I + +K++D S
Sbjct: 192 DDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETT 456
+ GH+ I+ +A+S N+LVS+ D L +WD K L + HS F P++
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516
++ F + + + + G+ + +P D P++ ++ DG I S
Sbjct: 124 LIVSGSF-DESVRIWDVKTGKC-----------LKTLPAHSD-PVSAVHFNRDGSLIVSS 170
Query: 517 CKSGHVKVFDTST 529
G +++DT++
Sbjct: 171 SYDGLCRIWDTAS 183
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 25/150 (16%)
Query: 267 YSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS 326
+ HSG L + + T KLW +Q E M + SS +M N
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGF-----ECIRTMHGHDHNVSSVSIMPN--------- 203
Query: 327 ISCFALRGSHLFSASGGK-ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDD 383
G H+ SAS K I ++ ++T + TF + QD L A +D
Sbjct: 204 -------GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR-MVRPNQDGTLIASCSND 255
Query: 384 SSILVHCPCTKKTKAKLKGHQNRITCLAYS 413
++ V TK+ KA+L+ H++ + C++++
Sbjct: 256 QTVRVWVVATKECKAELREHRHVVECISWA 285
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 382 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 441
+D++I V T + LKGH + + +++ S +L S AD + +WD G++ C
Sbjct: 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE--CI 185
Query: 442 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 485
+ +H V+ + P+ H++S + I ++E T
Sbjct: 186 RTMHGHDHN-------VSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 397 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432
K L GH++ +T + + +V+VS+ DA + VWD
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD 136
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 273 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 332
++++ + T KLW W++N +LE Q ++ VM +A +PKD S FA
Sbjct: 111 YVLSGSDDLTVKLWNWENN-WALE--------QTFEGHEHFVMC--VAFNPKDP-STFAS 158
Query: 333 ----RGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILV 388
R ++S G F+L T Q Y+ L + DD +I +
Sbjct: 159 GCLDRTVKVWSL-GQSTPNFTLTTGQERGV-----NYVDYYPLPDKPYMITASDDLTIKI 212
Query: 389 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 437
TK A L+GH + ++ + +L +++S D L +W++ +K
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
KT+ LKGH N++ C+ + +VSS D ++ VWD+
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDS 93
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 25/168 (14%)
Query: 268 SHSGDFLVALTQTATHKLWKWQSNK--QSLEEENVNMESQLYQPSSKLVMTNDIAADPKD 325
S +G+ V+ +W +S + Q+ E ++ S Y PS D A D
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPS------GDAFASGSD 260
Query: 326 SISC--FALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD 383
+C + LR +++I+S E+ A+ + F L + LFA G++D
Sbjct: 261 DATCRLYDLRADR-------EVAIYSKESIIFGASSVD-------FSLSGRLLFA-GYND 305
Query: 384 SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 431
+I V + L GH+NR++ L S S D L VW
Sbjct: 306 YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 362 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419
P A Y QD A D ++ V T + +K H++ + C A+S + +
Sbjct: 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 672
Query: 420 VSSGADAQLCVWDAVGWKKLCSKFLHSFQ----------------TG------------- 450
+ AD ++ +WD+ K + + HS Q TG
Sbjct: 673 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 732
Query: 451 ------LVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH-----------TSQL 492
+ T VNH +F PD L S +G + +++ + N +S+
Sbjct: 733 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 792
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537
P+ +++ + ++S DG I V+ K+ V +FD T L +I+
Sbjct: 793 PPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIH 836
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 458
+LKGH + C A+SL +L + + ++ +W+ + L S S + G V
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 459 NHIQFHPDQIHLLS 472
+ F PD L+S
Sbjct: 1182 TDVCFSPDSKTLVS 1195
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 50/225 (22%)
Query: 362 PPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419
P A Y QD A D ++ V T + +K H++ + C A+S + +
Sbjct: 620 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI 679
Query: 420 VSSGADAQLCVWDAVGWKKLCSKFLHSFQ----------------TG------------- 450
+ AD ++ +WD+ K + + HS Q TG
Sbjct: 680 ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ 739
Query: 451 ------LVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH-----------TSQL 492
+ T VNH +F PD L S +G + +++ + N +S+
Sbjct: 740 KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED 799
Query: 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537
P+ +++ + ++S DG I V+ K+ V +FD T L +I+
Sbjct: 800 PPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIH 843
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 458
+LKGH + C A+SL +L + + ++ +W+ + L S S + G V
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 459 NHIQFHPDQIHLLS 472
+ F PD L+S
Sbjct: 1189 TDVCFSPDSKTLVS 1202
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 118/300 (39%), Gaps = 53/300 (17%)
Query: 246 SECRTLLLPDNSFGGR---VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE--EENV 300
SEC + LPD G V + S++G+F V+ + + +LW Q+ + +
Sbjct: 52 SEC-SYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTK 110
Query: 301 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFA 360
++ S + P ++ + ++ +++ + ++G E TL+ A
Sbjct: 111 DVLSVAFSPDNRQI----VSGGRDNALRVWNVKG----------------ECMHTLSRGA 150
Query: 361 NPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 418
+ ++ + L + G D+ + V T + LKGH N +T + S ++
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 419 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 478
SS D +WD + L S P +N I F P++ + + E I
Sbjct: 211 CASSDKDGVARLWDLTKGEAL------SEMAAGAP----INQICFSPNRYWMCAATEKGI 260
Query: 479 DVYE----------APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528
+++ AP + ++VP+ + + +S DG +Y ++V+ S
Sbjct: 261 RIFDLENKDIIVELAPEHQGSKKIVPECVSI-----AWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 27/160 (16%)
Query: 383 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442
D ++ V K ++ L GH ++ +A S ++ S G D + +WD KKL S
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598
Query: 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY-----------------EAPT 485
+ ++++ + F P++ L + E I ++ EA
Sbjct: 599 ---------LEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEK 649
Query: 486 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 525
+++ + + T +S DG ++ G ++V+
Sbjct: 650 ADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 380 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 439
G DD I V+ KK +L GH + L Y+ +LVS D + VWD KK
Sbjct: 138 GADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI---KKG 193
Query: 440 C 440
C
Sbjct: 194 C 194
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 380 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 439
G DD I V+ KK +L GH + L Y+ +LVS D + VWD KK
Sbjct: 138 GADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI---KKG 193
Query: 440 C 440
C
Sbjct: 194 C 194
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 13/165 (7%)
Query: 372 LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 431
+ D F +I V+ K KL GH I+ L ++ + +L+S+ D L +W
Sbjct: 215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Query: 432 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 491
+ HS +IV+ D++ S+ +G + ++ +L +
Sbjct: 275 HGGNGNSQNCFYGHS--------QSIVSASWVGDDKVISCSM-DGSVRLW---SLKQNTL 322
Query: 492 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 535
L +D +PI S DG+ V+ G V V+D L + +
Sbjct: 323 LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR 367
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 16/149 (10%)
Query: 306 LYQPSSKLVMTNDIAADPKDSISCF---ALRGSHLFSASGGKISIFSLETFQTLATFANP 362
L + K+ + DP + + + ALR + ++ A+GG+ L + FAN
Sbjct: 522 LDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANK 581
Query: 363 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS 422
A F+LL ++ F D ++ + +++L IT L +L L
Sbjct: 582 LYNAARFVLLSREGFQAKEDTPTL-----ADRFMRSRLSRGVEEITALYEALDL------ 630
Query: 423 GADAQLCVWDAVGWKKLCSKFLHSFQTGL 451
A A V++ V W + C +L + + L
Sbjct: 631 -AQAAREVYELV-WSEFCDWYLEAAKPAL 657
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 496 KMDLPITY--ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551
++ LP +Y S DG +++ G + +D TLE + Q++L PG S+ L
Sbjct: 275 RVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL-----PGNASMSL 327
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-CSKFLHSFQTGLVPETTIV 458
L+GH+N + +A++ S N+L + D + VW+ + C L+S T V
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-------HTQDV 153
Query: 459 NHIQFHPDQIHLLS 472
H+ +HP Q L S
Sbjct: 154 KHVVWHPSQELLAS 167
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 49 FGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCR----QQKLPSDFA 104
G I++ GE ++ EK + K+D + + L + K EA+ ++ LPSDF
Sbjct: 58 LGAIIVKGELDEHEKLVELMKKVDVVISALAVPQYLDQFKILEAIKVAGNIKRFLPSDFG 117
Query: 105 ---ERAHLFDDFKVLVERNPMLQDKLK 128
+R + F+ L+ER M++ ++
Sbjct: 118 VEEDRINALPPFEALIERKRMIRRAIE 144
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 400 LKGHQNRITCLAY-SLSLNVLVSSGADAQLCVWD 432
L+GH R+ +A+ + NVL+S+G D + VWD
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 400 LKGHQNRITCLAY-SLSLNVLVSSGADAQLCVWD 432
L+GH R+ +A+ + NVL+S+G D + VWD
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+T+ L+GH +I + + +LVS+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 329 CFALRGSHLFSASG-GKISIFSLETFQTLATFANPP---PIATYFILLPQDLFAFGFDDS 384
CF G+ + S +F L Q L T+++ I + L G+DD
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 385 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432
+ V L GH NR++CL + + + D+ L +W+
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+T+ L+GH +I + + +LVS+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 329 CFALRGSHLFSASG-GKISIFSLETFQTLATFANPP---PIATYFILLPQDLFAFGFDDS 384
CF G+ + S +F L Q L T+++ I + L G+DD
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 385 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432
+ V L GH NR++CL + + + D+ L +W+
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+T+ L+GH +I + + +LVS+ D +L +WD+
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 95
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 329 CFALRGSHLFSASG-GKISIFSLETFQTLATFANPP---PIATYFILLPQDLFAFGFDDS 384
CF G+ + S +F L Q L T+++ I + L G+DD
Sbjct: 244 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 303
Query: 385 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432
+ V L GH NR++CL + + + D+ L +W+
Sbjct: 304 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 49 FGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCR----QQKLPSDFA 104
G I++ GE ++ EK + K+D + L + K EA+ ++ LPSDF
Sbjct: 58 LGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 117
Query: 105 ---ERAHLFDDFKVLVERNPMLQDKLK 128
+R + F+ L+ER M++ ++
Sbjct: 118 VEEDRINALPPFEALIERQRMIRRAIE 144
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 49 FGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCR----QQKLPSDFA 104
G I++ GE ++ EK + K+D + L + K EA+ ++ LPSDF
Sbjct: 58 LGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 117
Query: 105 ---ERAHLFDDFKVLVERNPMLQDKLK 128
+R + F+ L+ER M++ ++
Sbjct: 118 VEEDRINALPPFEALIERKRMIRRAIE 144
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 48/186 (25%)
Query: 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-----------CSKFLHS- 446
++K H++ + C A+S + + D ++ +W+++ + + C F +S
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 447 ----FQTG-------------------LVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYE 482
TG + T VNH +F PD L S +G + +++
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 483 APTLNHTSQLV-----------PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531
A + N + + M++ + ++S DG I V+ K+ + +FD T
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFLFDIHTSG 836
Query: 532 LRCQIN 537
L +I+
Sbjct: 837 LLGEIH 842
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 49 FGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCR----QQKLPSDFA 104
G I++ GE ++ EK + K+D + L + K EA+ ++ LPSDF
Sbjct: 54 LGAIIVKGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG 113
Query: 105 ---ERAHLFDDFKVLVERNPMLQDKLK 128
+R + F+ L+ER M++ ++
Sbjct: 114 VEEDRINALPPFEALIERKRMIRRAIE 140
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 380 GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 439
G D++I + T + K L GH + CL Y V+++ +D+ + VWD + L
Sbjct: 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML 206
Query: 440 ------CSKFLH-SFQTGLV 452
C LH F G++
Sbjct: 207 NTLIHHCEAVLHLRFNNGMM 226
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 393 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 435
T T + GHQ+ + +A+S ++S+GA+ ++ +W+ +G
Sbjct: 107 TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 31/103 (30%)
Query: 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 315
N G V L+Y H GD L KQ+L+++N+N Q Q + M
Sbjct: 44 NELGAAHVHLVYGHGGDLL-----------------KQALKDDNLNWVLQAEQLGTGHAM 86
Query: 316 TNDIA--ADPKDSISCFALRGSHLFSASGGKISIFSLETFQTL 356
AD +D + + G + + S+ET Q L
Sbjct: 87 QQAAPFFADDEDILMLY------------GDVPLISVETLQRL 117
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 329 CFALRGSHLFSASG-GKISIFSLETFQTLATFANPP---PIATYFILLPQDLFAFGFDDS 384
CF G+ + S +F L Q L T+++ I + L G+DD
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 385 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432
+ V L GH NR++CL + + + D+ L +W+
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+T+ L+GH +I + + +L+S+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS 84
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 329 CFALRGSHLFSASG-GKISIFSLETFQTLATFANPP---PIATYFILLPQDLFAFGFDDS 384
CF G+ + S +F L Q L T+++ I + L G+DD
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 385 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432
+ V L GH NR++CL + + + D+ L +W+
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433
+T+ L+GH +I + + +L+S+ D +L +WD+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDS 84
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 445
L+GH ++ L ++ N +VS+ D +L VW+A+ +K + LH
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH 107
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 31/103 (30%)
Query: 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVM 315
N G V L+Y H GD L KQ+L+++N+N Q Q + M
Sbjct: 44 NELGAAHVHLVYGHGGDLL-----------------KQALKDDNLNWVLQAEQLGTGHAM 86
Query: 316 TNDIA--ADPKDSISCFALRGSHLFSASGGKISIFSLETFQTL 356
AD +D + + G + + S+ET Q L
Sbjct: 87 QQAAPFFADDEDILMLY------------GDVPLISVETLQRL 117
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 376 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 431
+ GF + +++ T A+LKGH +R+ L S + S+ AD L +W
Sbjct: 347 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 376 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 431
+ GF + +++ T A+LKGH +R+ L S + S+ AD L +W
Sbjct: 336 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 372 LPQDLFAFGFDDSSILVH-CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 430
+ +DL A G D++I ++ K L H++ + L + + + LVSSGADA +
Sbjct: 551 IEEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE-TPSTLVSSGADACIKR 609
Query: 431 WDAV 434
W+ V
Sbjct: 610 WNVV 613
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 500
F+ S TG+V IV + F H+LS QI + + P + H S++ D+++ P
Sbjct: 315 FIMSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRV--DEIEQP 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,382,364
Number of Sequences: 62578
Number of extensions: 690975
Number of successful extensions: 1781
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1568
Number of HSP's gapped (non-prelim): 172
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)