Query 007306
Match_columns 608
No_of_seqs 762 out of 4220
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 21:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 2.2E-64 4.7E-69 461.0 27.7 464 2-583 9-515 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 2E-64 4.4E-69 447.5 24.2 459 13-580 7-508 (508)
3 KOG0271 Notchless-like WD40 re 100.0 1.9E-53 4.2E-58 385.7 29.0 316 214-579 119-479 (480)
4 KOG0273 Beta-transducin family 100.0 1.9E-46 4.2E-51 349.2 32.4 321 214-581 182-523 (524)
5 KOG0271 Notchless-like WD40 re 100.0 5.4E-44 1.2E-48 324.3 25.3 325 152-526 107-479 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 6.8E-44 1.5E-48 328.1 23.8 277 209-526 174-458 (459)
7 KOG0272 U4/U6 small nuclear ri 100.0 6.4E-44 1.4E-48 328.3 23.2 279 257-580 173-459 (459)
8 KOG0286 G-protein beta subunit 100.0 1.9E-40 4.1E-45 291.5 32.0 280 257-579 53-343 (343)
9 KOG0279 G protein beta subunit 100.0 2.5E-40 5.3E-45 289.1 32.0 295 252-581 10-313 (315)
10 KOG0286 G-protein beta subunit 100.0 2.2E-40 4.7E-45 291.1 31.2 278 216-526 61-343 (343)
11 KOG0318 WD40 repeat stress pro 100.0 1.9E-37 4.1E-42 293.0 38.8 354 215-585 64-564 (603)
12 KOG0291 WD40-repeat-containing 100.0 2.1E-37 4.5E-42 304.4 37.3 328 214-582 311-710 (893)
13 KOG0265 U5 snRNP-specific prot 100.0 5.1E-38 1.1E-42 277.3 27.0 280 256-578 44-335 (338)
14 KOG0279 G protein beta subunit 100.0 1.8E-37 3.8E-42 271.3 29.9 276 218-529 23-314 (315)
15 KOG0318 WD40 repeat stress pro 100.0 5.9E-36 1.3E-40 283.0 40.7 352 204-581 183-602 (603)
16 KOG0291 WD40-repeat-containing 100.0 3.8E-36 8.2E-41 295.5 40.3 343 214-585 149-554 (893)
17 KOG0315 G-protein beta subunit 100.0 6.6E-37 1.4E-41 263.1 28.7 274 272-590 11-299 (311)
18 KOG0315 G-protein beta subunit 100.0 2.1E-36 4.6E-41 260.0 30.8 279 223-537 11-297 (311)
19 KOG0295 WD40 repeat-containing 100.0 6.1E-38 1.3E-42 283.7 22.1 271 217-527 115-405 (406)
20 KOG0319 WD40-repeat-containing 100.0 1.3E-36 2.8E-41 298.5 29.7 241 322-584 363-622 (775)
21 KOG0282 mRNA splicing factor [ 100.0 5.9E-38 1.3E-42 294.0 19.2 283 256-579 211-503 (503)
22 KOG0645 WD40 repeat protein [G 100.0 1.9E-35 4.1E-40 257.5 32.3 288 257-581 12-311 (312)
23 KOG0284 Polyadenylation factor 100.0 1.6E-37 3.4E-42 284.8 17.6 274 215-528 101-380 (464)
24 KOG0263 Transcription initiati 100.0 1.9E-36 4.1E-41 300.8 25.8 259 259-530 378-651 (707)
25 KOG0285 Pleiotropic regulator 100.0 4.5E-36 9.8E-41 270.7 25.6 289 256-582 148-440 (460)
26 KOG0295 WD40 repeat-containing 100.0 3.3E-36 7.2E-41 272.4 24.9 279 257-580 106-405 (406)
27 KOG0273 Beta-transducin family 100.0 2.1E-35 4.6E-40 275.7 30.4 274 212-528 237-523 (524)
28 KOG0284 Polyadenylation factor 100.0 2.8E-37 6.1E-42 283.2 17.4 279 259-582 96-381 (464)
29 KOG0296 Angio-associated migra 100.0 1.4E-34 3E-39 262.2 32.9 319 215-581 69-398 (399)
30 KOG0263 Transcription initiati 100.0 8.6E-36 1.9E-40 296.1 25.7 243 209-485 377-650 (707)
31 KOG0319 WD40-repeat-containing 100.0 4.3E-35 9.3E-40 287.9 30.3 348 215-586 67-582 (775)
32 KOG0266 WD40 repeat-containing 100.0 2.1E-34 4.5E-39 295.3 33.2 288 258-581 158-454 (456)
33 KOG0316 Conserved WD40 repeat- 100.0 2.3E-34 5.1E-39 245.4 25.4 277 257-580 15-298 (307)
34 KOG0645 WD40 repeat protein [G 100.0 2.9E-33 6.2E-38 243.9 30.3 273 216-528 20-311 (312)
35 PLN00181 protein SPA1-RELATED; 100.0 3.5E-33 7.6E-38 308.0 39.0 319 231-580 457-792 (793)
36 KOG0640 mRNA cleavage stimulat 100.0 8.8E-34 1.9E-38 251.2 25.5 301 258-581 111-426 (430)
37 cd00200 WD40 WD40 domain, foun 100.0 1.9E-32 4.1E-37 267.0 37.0 278 257-579 7-289 (289)
38 KOG0278 Serine/threonine kinas 100.0 2E-34 4.3E-39 247.9 17.6 290 256-592 11-310 (334)
39 KOG0306 WD40-repeat-containing 100.0 1.3E-32 2.8E-37 270.6 31.9 338 216-582 113-665 (888)
40 KOG0316 Conserved WD40 repeat- 100.0 1.8E-33 4E-38 239.9 22.2 242 322-585 15-261 (307)
41 KOG0265 U5 snRNP-specific prot 100.0 8.1E-33 1.8E-37 244.5 27.1 279 213-526 50-336 (338)
42 KOG0306 WD40-repeat-containing 100.0 4.8E-32 1E-36 266.6 33.8 339 217-582 72-623 (888)
43 KOG0266 WD40 repeat-containing 100.0 2.2E-32 4.7E-37 280.4 31.5 279 215-528 164-454 (456)
44 KOG0276 Vesicle coat complex C 100.0 1.6E-32 3.4E-37 264.7 26.7 281 258-584 12-301 (794)
45 KOG0285 Pleiotropic regulator 100.0 2.9E-32 6.4E-37 246.1 26.2 274 216-529 157-440 (460)
46 KOG0296 Angio-associated migra 100.0 9E-32 1.9E-36 244.0 27.2 286 258-587 63-362 (399)
47 KOG0281 Beta-TrCP (transducin 100.0 2.9E-33 6.3E-38 251.5 17.0 280 258-586 196-482 (499)
48 KOG0293 WD40 repeat-containing 100.0 1.5E-31 3.2E-36 245.9 28.0 278 215-529 229-514 (519)
49 cd00200 WD40 WD40 domain, foun 100.0 1.2E-30 2.7E-35 254.2 36.5 271 215-526 14-289 (289)
50 PLN00181 protein SPA1-RELATED; 100.0 1.1E-30 2.4E-35 288.2 39.1 283 213-527 486-792 (793)
51 KOG0292 Vesicle coat complex C 100.0 7.5E-32 1.6E-36 269.4 26.4 290 258-585 8-325 (1202)
52 KOG0283 WD40 repeat-containing 100.0 5.6E-32 1.2E-36 271.4 25.6 270 257-530 265-578 (712)
53 KOG0275 Conserved WD40 repeat- 100.0 8.3E-33 1.8E-37 246.4 17.4 278 217-526 220-507 (508)
54 KOG0292 Vesicle coat complex C 100.0 8E-31 1.7E-35 262.1 31.3 274 216-529 15-322 (1202)
55 KOG0281 Beta-TrCP (transducin 100.0 9.2E-33 2E-37 248.3 15.4 266 218-533 203-482 (499)
56 KOG1407 WD40 repeat protein [F 100.0 2E-30 4.4E-35 224.9 28.0 279 257-581 18-311 (313)
57 KOG0276 Vesicle coat complex C 100.0 2.1E-30 4.5E-35 250.1 30.5 268 216-524 19-295 (794)
58 KOG0313 Microtubule binding pr 100.0 2.7E-30 5.9E-35 235.4 27.5 270 222-528 115-418 (423)
59 KOG0288 WD40 repeat protein Ti 100.0 8.9E-32 1.9E-36 247.6 16.7 280 257-579 173-459 (459)
60 KOG0313 Microtubule binding pr 100.0 2.6E-30 5.6E-35 235.6 24.9 273 258-581 104-418 (423)
61 KOG0643 Translation initiation 100.0 8.9E-30 1.9E-34 221.6 26.1 287 256-581 7-317 (327)
62 KOG0282 mRNA splicing factor [ 100.0 3.9E-31 8.5E-36 248.3 19.1 275 216-526 220-503 (503)
63 KOG0973 Histone transcription 100.0 2.9E-30 6.3E-35 265.6 27.0 306 216-584 19-358 (942)
64 KOG0772 Uncharacterized conser 100.0 3.1E-30 6.6E-35 243.6 24.8 294 258-584 166-491 (641)
65 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-28 4.1E-33 219.3 33.6 286 258-584 13-306 (311)
66 KOG0278 Serine/threonine kinas 100.0 6.2E-31 1.3E-35 226.4 17.0 272 218-533 25-302 (334)
67 KOG1408 WD40 repeat protein [F 100.0 2.2E-29 4.7E-34 246.3 28.9 349 214-582 328-714 (1080)
68 KOG0274 Cdc4 and related F-box 100.0 3.3E-29 7.2E-34 255.5 31.0 271 221-536 217-490 (537)
69 KOG0277 Peroxisomal targeting 100.0 7.3E-30 1.6E-34 220.6 20.7 237 323-580 59-308 (311)
70 KOG0305 Anaphase promoting com 100.0 5.9E-29 1.3E-33 243.7 27.0 271 217-530 184-463 (484)
71 KOG0310 Conserved WD40 repeat- 100.0 6E-29 1.3E-33 234.1 25.4 279 259-582 26-310 (487)
72 KOG0643 Translation initiation 100.0 5.1E-29 1.1E-33 216.9 22.1 271 216-529 16-318 (327)
73 KOG0294 WD40 repeat-containing 100.0 3.1E-28 6.8E-33 216.9 27.2 274 274-583 4-283 (362)
74 KOG0283 WD40 repeat-containing 100.0 4.4E-29 9.6E-34 250.7 24.6 242 322-583 265-578 (712)
75 KOG0772 Uncharacterized conser 100.0 5.3E-29 1.1E-33 235.3 23.5 290 216-528 173-487 (641)
76 KOG0274 Cdc4 and related F-box 100.0 3.1E-28 6.8E-33 248.3 30.9 276 258-586 207-487 (537)
77 PTZ00421 coronin; Provisional 100.0 1.3E-27 2.9E-32 243.7 34.5 274 258-560 19-313 (493)
78 KOG0308 Conserved WD40 repeat- 100.0 5.1E-29 1.1E-33 241.8 21.0 328 218-585 33-397 (735)
79 KOG1446 Histone H3 (Lys4) meth 100.0 3.3E-27 7.1E-32 211.4 30.5 245 323-586 13-267 (311)
80 KOG0641 WD40 repeat protein [G 100.0 8.8E-27 1.9E-31 197.9 30.8 292 206-528 28-349 (350)
81 KOG1408 WD40 repeat protein [F 100.0 1.4E-27 3.1E-32 233.7 29.4 266 305-589 349-679 (1080)
82 KOG0641 WD40 repeat protein [G 100.0 1.8E-26 4E-31 196.0 32.2 303 258-581 31-349 (350)
83 KOG0277 Peroxisomal targeting 100.0 2.6E-28 5.7E-33 210.9 21.4 261 230-527 36-308 (311)
84 PTZ00421 coronin; Provisional 100.0 7.4E-27 1.6E-31 238.2 35.8 286 217-530 27-333 (493)
85 KOG0640 mRNA cleavage stimulat 100.0 5.6E-28 1.2E-32 214.5 21.3 286 214-528 116-426 (430)
86 KOG0288 WD40 repeat protein Ti 100.0 1.3E-28 2.9E-33 226.8 17.6 275 215-526 180-459 (459)
87 KOG1539 WD repeat protein [Gen 100.0 3E-27 6.4E-32 235.9 28.3 341 211-581 245-648 (910)
88 KOG0268 Sof1-like rRNA process 100.0 9.1E-29 2E-33 224.1 15.8 281 256-585 63-349 (433)
89 KOG1407 WD40 repeat protein [F 100.0 1.3E-27 2.8E-32 207.5 22.0 245 322-590 18-270 (313)
90 KOG0299 U3 snoRNP-associated p 100.0 3.7E-27 8E-32 220.4 25.6 271 214-517 146-444 (479)
91 KOG0305 Anaphase promoting com 100.0 4.7E-27 1E-31 230.4 26.7 273 262-583 180-463 (484)
92 KOG0289 mRNA splicing factor [ 100.0 8.8E-27 1.9E-31 216.0 26.8 271 217-527 226-505 (506)
93 KOG0299 U3 snoRNP-associated p 100.0 5.3E-27 1.1E-31 219.4 25.0 292 258-580 141-455 (479)
94 KOG0300 WD40 repeat-containing 100.0 4.5E-27 9.8E-32 209.3 22.8 288 256-584 145-479 (481)
95 KOG0268 Sof1-like rRNA process 100.0 6.3E-28 1.4E-32 218.7 16.7 274 218-536 74-353 (433)
96 KOG0301 Phospholipase A2-activ 100.0 8.9E-27 1.9E-31 228.1 25.2 274 256-582 11-289 (745)
97 KOG0310 Conserved WD40 repeat- 100.0 2.7E-26 5.9E-31 216.3 27.3 278 210-530 26-311 (487)
98 KOG0300 WD40 repeat-containing 100.0 1.1E-26 2.3E-31 207.0 22.5 292 221-530 159-478 (481)
99 PTZ00420 coronin; Provisional 100.0 2.6E-25 5.7E-30 227.7 35.7 221 322-561 72-317 (568)
100 KOG0289 mRNA splicing factor [ 100.0 4.1E-26 8.8E-31 211.7 26.6 280 259-580 219-505 (506)
101 PTZ00420 coronin; Provisional 100.0 1.5E-25 3.3E-30 229.4 32.7 224 340-584 50-296 (568)
102 KOG2096 WD40 repeat protein [G 100.0 6.7E-26 1.5E-30 202.2 26.0 291 257-583 84-404 (420)
103 KOG1274 WD40 repeat protein [G 100.0 9.5E-26 2.1E-30 227.8 29.2 283 257-578 11-297 (933)
104 KOG2096 WD40 repeat protein [G 99.9 1.7E-25 3.8E-30 199.6 26.9 295 215-528 91-402 (420)
105 KOG0647 mRNA export protein (c 99.9 2E-25 4.3E-30 198.0 26.1 266 215-517 32-312 (347)
106 KOG0647 mRNA export protein (c 99.9 1.8E-25 3.9E-30 198.3 24.7 270 258-570 26-312 (347)
107 KOG0308 Conserved WD40 repeat- 99.9 1.3E-26 2.7E-31 225.3 18.8 279 264-581 29-327 (735)
108 KOG1063 RNA polymerase II elon 99.9 6.8E-25 1.5E-29 214.9 29.6 344 221-581 205-699 (764)
109 KOG0639 Transducin-like enhanc 99.9 4.7E-26 1E-30 214.6 20.5 276 214-527 423-703 (705)
110 KOG1036 Mitotic spindle checkp 99.9 6.3E-25 1.4E-29 195.8 26.3 268 258-571 12-294 (323)
111 KOG4283 Transcription-coupled 99.9 5.4E-25 1.2E-29 194.3 24.2 300 258-581 42-365 (397)
112 KOG1332 Vesicle coat complex C 99.9 5.7E-26 1.2E-30 195.5 17.6 246 256-529 8-287 (299)
113 KOG2048 WD40 repeat protein [G 99.9 1.5E-23 3.3E-28 205.3 36.6 359 210-584 25-551 (691)
114 KOG0639 Transducin-like enhanc 99.9 1.3E-25 2.8E-30 211.7 20.9 280 257-580 417-703 (705)
115 KOG0301 Phospholipase A2-activ 99.9 6.6E-25 1.4E-29 215.1 26.1 264 218-529 21-289 (745)
116 KOG0264 Nucleosome remodeling 99.9 1.4E-25 3.1E-30 210.0 20.5 251 258-529 123-405 (422)
117 KOG2106 Uncharacterized conser 99.9 1.8E-23 4E-28 197.6 34.7 315 217-582 161-522 (626)
118 KOG1539 WD repeat protein [Gen 99.9 6.5E-24 1.4E-28 212.2 33.4 335 216-585 164-610 (910)
119 KOG0294 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 189.1 28.3 264 225-530 4-283 (362)
120 KOG1332 Vesicle coat complex C 99.9 3.5E-25 7.6E-30 190.6 18.3 254 322-590 9-294 (299)
121 KOG1036 Mitotic spindle checkp 99.9 7.1E-24 1.5E-28 189.1 26.3 265 215-518 18-294 (323)
122 KOG1273 WD40 repeat protein [G 99.9 3.1E-24 6.7E-29 191.4 23.6 286 262-592 26-332 (405)
123 KOG2048 WD40 repeat protein [G 99.9 2.5E-23 5.5E-28 203.7 32.2 289 258-582 24-320 (691)
124 KOG0321 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 211.2 22.6 295 263-583 53-393 (720)
125 KOG0973 Histone transcription 99.9 1E-24 2.3E-29 224.9 23.1 261 258-587 12-318 (942)
126 KOG2106 Uncharacterized conser 99.9 1.7E-22 3.6E-27 191.2 35.5 273 214-528 204-521 (626)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.6E-22 3.5E-27 199.0 36.9 278 222-538 1-289 (300)
128 KOG0646 WD40 repeat protein [G 99.9 3.9E-24 8.4E-29 200.7 23.5 243 334-585 50-311 (476)
129 KOG0264 Nucleosome remodeling 99.9 1.7E-24 3.7E-29 202.8 20.2 249 322-582 122-405 (422)
130 KOG2055 WD40 repeat protein [G 99.9 9.2E-24 2E-28 197.7 24.5 284 258-581 212-512 (514)
131 KOG0269 WD40 repeat-containing 99.9 2.9E-24 6.4E-29 213.0 19.8 289 259-583 39-342 (839)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.1E-22 6.6E-27 197.1 34.3 271 271-589 1-287 (300)
133 KOG2055 WD40 repeat protein [G 99.9 5.1E-23 1.1E-27 192.8 26.2 285 212-528 215-512 (514)
134 KOG1063 RNA polymerase II elon 99.9 9.3E-23 2E-27 200.0 28.7 336 216-581 322-763 (764)
135 KOG1274 WD40 repeat protein [G 99.9 8.2E-23 1.8E-27 206.7 29.2 274 207-525 10-297 (933)
136 KOG4283 Transcription-coupled 99.9 6.8E-23 1.5E-27 181.1 24.0 281 218-528 52-365 (397)
137 KOG0267 Microtubule severing p 99.9 2.4E-25 5.3E-30 218.9 9.4 229 322-572 26-259 (825)
138 KOG1034 Transcriptional repres 99.9 6.8E-23 1.5E-27 184.0 22.9 291 258-581 37-383 (385)
139 KOG0646 WD40 repeat protein [G 99.9 4.6E-23 9.9E-28 193.6 22.8 233 272-537 51-316 (476)
140 KOG0269 WD40 repeat-containing 99.9 1E-23 2.2E-28 209.3 18.7 284 216-531 45-343 (839)
141 KOG2445 Nuclear pore complex c 99.9 3E-22 6.4E-27 178.4 24.5 250 256-530 10-320 (361)
142 KOG4378 Nuclear protein COP1 [ 99.9 8.3E-23 1.8E-27 192.7 21.8 288 225-560 5-303 (673)
143 KOG4328 WD40 protein [Function 99.9 2.2E-22 4.7E-27 188.4 23.2 292 258-582 185-496 (498)
144 KOG2445 Nuclear pore complex c 99.9 1.2E-21 2.5E-26 174.7 26.2 254 322-583 11-320 (361)
145 KOG1273 WD40 repeat protein [G 99.9 5.9E-22 1.3E-26 176.9 24.1 277 216-531 29-325 (405)
146 KOG0267 Microtubule severing p 99.9 3.1E-24 6.7E-29 211.2 10.6 252 222-520 4-260 (825)
147 KOG2919 Guanine nucleotide-bin 99.9 1E-21 2.3E-26 176.0 22.6 276 262-572 52-361 (406)
148 KOG0650 WD40 repeat nucleolar 99.9 1.2E-21 2.7E-26 189.0 24.7 287 256-579 397-733 (733)
149 KOG0270 WD40 repeat-containing 99.9 5.2E-21 1.1E-25 178.7 22.8 233 334-585 192-453 (463)
150 KOG0650 WD40 repeat nucleolar 99.9 6E-21 1.3E-25 184.3 23.7 291 215-525 405-732 (733)
151 KOG0302 Ribosome Assembly prot 99.9 4.4E-21 9.5E-26 175.5 20.0 244 322-579 149-436 (440)
152 KOG1445 Tumor-specific antigen 99.9 6.8E-21 1.5E-25 184.8 21.7 121 256-393 76-201 (1012)
153 KOG0270 WD40 repeat-containing 99.9 4.1E-21 8.9E-26 179.4 17.9 258 261-533 175-454 (463)
154 KOG1009 Chromatin assembly com 99.9 8.8E-20 1.9E-24 168.7 25.0 300 259-584 13-375 (434)
155 KOG4328 WD40 protein [Function 99.9 5.1E-20 1.1E-24 172.7 22.9 287 216-529 192-496 (498)
156 KOG4378 Nuclear protein COP1 [ 99.9 2.8E-20 6.1E-25 175.7 20.8 239 325-584 35-283 (673)
157 KOG0307 Vesicle coat complex C 99.9 1.7E-21 3.6E-26 202.3 13.8 243 323-584 63-330 (1049)
158 KOG1009 Chromatin assembly com 99.9 1.3E-19 2.9E-24 167.5 24.1 292 217-533 20-377 (434)
159 KOG0321 WD40 repeat-containing 99.9 6E-20 1.3E-24 178.8 22.0 280 223-531 65-394 (720)
160 KOG1538 Uncharacterized conser 99.9 8.7E-20 1.9E-24 178.2 21.9 268 212-528 14-293 (1081)
161 KOG2919 Guanine nucleotide-bin 99.9 3E-19 6.4E-24 160.4 23.3 272 217-519 56-361 (406)
162 KOG0307 Vesicle coat complex C 99.8 1.2E-20 2.5E-25 196.1 15.7 286 217-531 13-330 (1049)
163 KOG0302 Ribosome Assembly prot 99.8 7.5E-20 1.6E-24 167.5 17.6 208 361-584 149-381 (440)
164 KOG0649 WD40 repeat protein [G 99.8 2.9E-18 6.3E-23 148.0 25.8 286 261-579 12-314 (325)
165 KOG1538 Uncharacterized conser 99.8 3.2E-19 6.9E-24 174.3 21.1 271 261-583 14-295 (1081)
166 KOG0322 G-protein beta subunit 99.8 2E-19 4.4E-24 157.0 16.4 266 222-527 25-322 (323)
167 KOG1188 WD40 repeat protein [G 99.8 1.1E-18 2.5E-23 158.0 21.3 278 272-582 41-347 (376)
168 COG2319 FOG: WD40 repeat [Gene 99.8 3.6E-16 7.8E-21 161.7 42.6 324 214-587 69-406 (466)
169 KOG1963 WD40 repeat protein [G 99.8 2.7E-17 5.8E-22 166.9 32.4 359 217-590 23-502 (792)
170 KOG1517 Guanine nucleotide bin 99.8 3.9E-18 8.5E-23 175.1 26.3 302 209-531 1063-1384(1387)
171 KOG1334 WD40 repeat protein [G 99.8 2E-19 4.3E-24 170.0 15.0 294 257-585 140-470 (559)
172 KOG0649 WD40 repeat protein [G 99.8 1.4E-17 3E-22 143.9 24.8 276 217-525 17-313 (325)
173 COG2319 FOG: WD40 repeat [Gene 99.8 4.5E-16 9.7E-21 160.9 40.6 312 219-582 119-443 (466)
174 KOG1007 WD repeat protein TSSC 99.8 4.2E-18 9.2E-23 150.7 20.6 213 355-581 114-361 (370)
175 KOG1034 Transcriptional repres 99.8 1.1E-18 2.4E-23 157.1 17.0 253 320-585 34-341 (385)
176 KOG4227 WD40 repeat protein [G 99.8 7.2E-18 1.6E-22 155.0 22.2 307 257-592 54-396 (609)
177 KOG1963 WD40 repeat protein [G 99.8 3.6E-17 7.8E-22 166.0 28.0 332 215-589 210-591 (792)
178 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-18 4.7E-23 166.1 17.7 256 258-586 293-566 (577)
179 KOG0303 Actin-binding protein 99.8 1.2E-17 2.5E-22 154.1 19.3 227 256-509 78-320 (472)
180 KOG0303 Actin-binding protein 99.8 8.5E-18 1.8E-22 155.0 18.3 201 322-531 79-297 (472)
181 PRK11028 6-phosphogluconolacto 99.8 6.9E-16 1.5E-20 153.5 32.3 271 226-528 6-304 (330)
182 KOG1310 WD40 repeat protein [G 99.8 4.7E-17 1E-21 156.1 21.3 208 256-485 47-304 (758)
183 KOG1587 Cytoplasmic dynein int 99.8 1.5E-16 3.3E-21 161.5 26.3 265 232-530 222-518 (555)
184 KOG1007 WD repeat protein TSSC 99.8 3.9E-17 8.5E-22 144.6 19.0 253 209-484 62-361 (370)
185 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-17 2.5E-22 161.2 16.9 263 206-493 290-570 (577)
186 PRK11028 6-phosphogluconolacto 99.8 2.2E-15 4.8E-20 149.9 33.6 242 325-582 35-305 (330)
187 KOG1517 Guanine nucleotide bin 99.8 1.6E-16 3.5E-21 163.5 25.3 295 259-584 1064-1384(1387)
188 KOG1445 Tumor-specific antigen 99.8 1.8E-17 4E-22 161.3 17.4 249 218-532 587-848 (1012)
189 KOG2110 Uncharacterized conser 99.8 3E-15 6.6E-20 137.5 30.4 237 258-530 4-250 (391)
190 KOG0322 G-protein beta subunit 99.8 9.3E-18 2E-22 146.7 13.4 243 322-580 12-322 (323)
191 KOG1240 Protein kinase contain 99.8 3.1E-16 6.7E-21 163.9 25.7 251 257-531 1046-1337(1431)
192 KOG0290 Conserved WD40 repeat- 99.7 6.8E-16 1.5E-20 137.0 23.0 265 223-518 60-356 (364)
193 KOG2110 Uncharacterized conser 99.7 2.7E-15 5.8E-20 137.9 27.4 239 323-584 4-251 (391)
194 KOG1188 WD40 repeat protein [G 99.7 1.8E-16 3.9E-21 143.9 19.1 276 223-528 41-346 (376)
195 KOG0644 Uncharacterized conser 99.7 1.3E-17 2.8E-22 167.3 12.7 275 256-585 187-472 (1113)
196 KOG4227 WD40 repeat protein [G 99.7 3.8E-16 8.3E-21 143.8 20.8 293 206-528 52-387 (609)
197 KOG4497 Uncharacterized conser 99.7 1.1E-15 2.3E-20 138.0 23.2 303 216-574 54-425 (447)
198 KOG0644 Uncharacterized conser 99.7 1.2E-17 2.6E-22 167.5 9.0 236 322-585 188-430 (1113)
199 KOG1524 WD40 repeat-containing 99.7 3.5E-16 7.6E-21 149.8 16.8 267 258-581 13-286 (737)
200 KOG1587 Cytoplasmic dynein int 99.7 6.2E-15 1.3E-19 149.9 27.0 245 323-582 241-517 (555)
201 KOG0290 Conserved WD40 repeat- 99.7 2.2E-15 4.8E-20 133.8 20.0 241 213-481 99-362 (364)
202 KOG0771 Prolactin regulatory e 99.7 2.8E-16 6.2E-21 146.9 15.1 198 367-582 148-355 (398)
203 KOG1524 WD40 repeat-containing 99.7 1.4E-15 3E-20 145.7 19.0 204 272-525 76-283 (737)
204 KOG1523 Actin-related protein 99.7 4.6E-15 9.9E-20 133.7 20.7 207 259-531 10-239 (361)
205 KOG2321 WD40 repeat protein [G 99.7 9.3E-15 2E-19 141.4 24.1 280 207-530 48-345 (703)
206 KOG2394 WD40 protein DMR-N9 [G 99.7 2.9E-15 6.2E-20 143.8 20.1 245 327-584 126-455 (636)
207 KOG4497 Uncharacterized conser 99.7 7.6E-15 1.6E-19 132.6 20.6 272 264-583 13-393 (447)
208 KOG2111 Uncharacterized conser 99.7 4.1E-14 8.8E-19 127.7 25.0 238 327-584 8-259 (346)
209 KOG2139 WD40 repeat protein [G 99.7 4.9E-14 1.1E-18 129.1 25.4 296 215-528 103-431 (445)
210 KOG0771 Prolactin regulatory e 99.7 1.5E-15 3.3E-20 142.1 14.8 196 328-529 148-355 (398)
211 KOG1334 WD40 repeat protein [G 99.7 2.3E-15 5E-20 142.8 15.6 297 206-531 138-469 (559)
212 KOG2139 WD40 repeat protein [G 99.7 1.3E-13 2.8E-18 126.4 26.0 282 259-581 98-431 (445)
213 PRK01742 tolB translocation pr 99.7 1.6E-14 3.6E-19 148.1 23.0 206 343-581 184-401 (429)
214 KOG2321 WD40 repeat protein [G 99.7 5.3E-14 1.2E-18 136.2 24.4 294 257-591 49-355 (703)
215 PF02239 Cytochrom_D1: Cytochr 99.6 4.4E-13 9.5E-18 132.9 31.7 317 225-590 9-356 (369)
216 KOG1240 Protein kinase contain 99.6 6E-14 1.3E-18 147.1 26.4 256 322-586 1046-1339(1431)
217 KOG1272 WD40-repeat-containing 99.6 1.3E-15 2.8E-20 143.7 11.6 281 260-587 130-415 (545)
218 KOG1272 WD40-repeat-containing 99.6 1.1E-15 2.4E-20 144.1 10.6 269 212-525 131-406 (545)
219 PRK01742 tolB translocation pr 99.6 4.1E-14 8.9E-19 145.2 22.3 210 322-560 201-425 (429)
220 KOG2315 Predicted translation 99.6 1.1E-12 2.4E-17 127.3 28.9 317 215-583 39-392 (566)
221 KOG2111 Uncharacterized conser 99.6 1.9E-12 4.2E-17 117.0 28.2 231 216-485 11-257 (346)
222 PF02239 Cytochrom_D1: Cytochr 99.6 1.5E-12 3.2E-17 129.2 29.3 286 216-537 42-356 (369)
223 COG5354 Uncharacterized protei 99.6 2.9E-12 6.4E-17 122.9 28.8 325 215-584 37-398 (561)
224 PRK05137 tolB translocation pr 99.6 1E-12 2.3E-17 135.3 27.9 214 344-585 183-416 (435)
225 PRK03629 tolB translocation pr 99.6 1.2E-12 2.5E-17 134.1 27.2 212 344-583 180-408 (429)
226 PF10282 Lactonase: Lactonase, 99.6 5.5E-11 1.2E-15 118.3 38.3 285 225-535 2-331 (345)
227 COG2706 3-carboxymuconate cycl 99.6 4.4E-11 9.6E-16 110.9 34.0 280 231-534 15-329 (346)
228 KOG3881 Uncharacterized conser 99.6 5.2E-13 1.1E-17 123.8 21.2 252 258-536 54-328 (412)
229 PRK04922 tolB translocation pr 99.6 8.9E-13 1.9E-17 135.6 25.4 212 344-583 185-413 (433)
230 KOG2314 Translation initiation 99.6 3.5E-12 7.7E-17 123.3 26.9 334 216-593 216-596 (698)
231 KOG1523 Actin-related protein 99.6 2.7E-13 5.8E-18 122.5 17.9 218 361-585 8-240 (361)
232 KOG1310 WD40 repeat protein [G 99.5 1.2E-13 2.5E-18 133.1 15.3 214 322-537 48-312 (758)
233 PF08662 eIF2A: Eukaryotic tra 99.5 4.5E-13 9.8E-18 120.6 18.4 150 408-582 9-180 (194)
234 KOG1354 Serine/threonine prote 99.5 1.3E-12 2.8E-17 119.2 21.0 262 258-531 24-362 (433)
235 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-12 2.3E-17 118.2 20.1 152 368-536 10-186 (194)
236 PRK02889 tolB translocation pr 99.5 2.9E-12 6.3E-17 131.3 25.5 210 343-580 176-402 (427)
237 PRK03629 tolB translocation pr 99.5 8.5E-12 1.8E-16 127.8 28.4 229 232-508 179-427 (429)
238 PRK05137 tolB translocation pr 99.5 9.4E-12 2E-16 128.3 27.6 195 322-532 199-416 (435)
239 KOG2394 WD40 protein DMR-N9 [G 99.5 1E-12 2.2E-17 126.6 17.4 190 218-414 181-384 (636)
240 KOG3881 Uncharacterized conser 99.5 2.3E-12 5E-17 119.6 19.1 214 222-466 115-342 (412)
241 PRK02889 tolB translocation pr 99.5 9.6E-12 2.1E-16 127.5 25.8 212 322-560 193-424 (427)
242 PRK04922 tolB translocation pr 99.5 6.6E-12 1.4E-16 129.2 24.6 198 322-536 201-418 (433)
243 PF10282 Lactonase: Lactonase, 99.5 5.5E-10 1.2E-14 111.2 34.8 243 325-582 37-323 (345)
244 TIGR02800 propeller_TolB tol-p 99.4 4.6E-11 9.9E-16 123.3 27.0 210 344-581 171-397 (417)
245 PRK00178 tolB translocation pr 99.4 1.4E-10 3E-15 119.8 27.0 212 344-583 180-408 (430)
246 KOG2315 Predicted translation 99.4 1.5E-10 3.3E-15 112.7 24.5 270 212-530 75-392 (566)
247 KOG1354 Serine/threonine prote 99.4 1.3E-11 2.7E-16 112.8 14.6 257 323-584 24-362 (433)
248 KOG0974 WD-repeat protein WDR6 99.4 3.1E-11 6.8E-16 125.6 19.4 193 369-584 93-291 (967)
249 TIGR02658 TTQ_MADH_Hv methylam 99.4 5E-09 1.1E-13 101.6 32.4 273 232-537 27-339 (352)
250 PRK04792 tolB translocation pr 99.4 3.6E-10 7.9E-15 116.3 26.1 210 344-581 199-425 (448)
251 KOG4547 WD40 repeat-containing 99.4 7.6E-11 1.6E-15 115.6 19.7 198 268-485 2-221 (541)
252 TIGR03300 assembly_YfgL outer 99.3 2.1E-09 4.6E-14 109.0 31.1 295 221-578 64-376 (377)
253 KOG4547 WD40 repeat-containing 99.3 3.2E-10 6.9E-15 111.4 23.6 190 219-435 2-221 (541)
254 TIGR03300 assembly_YfgL outer 99.3 1.6E-09 3.4E-14 110.0 29.2 275 270-592 64-349 (377)
255 PRK01029 tolB translocation pr 99.3 5.8E-10 1.3E-14 113.8 25.7 220 344-585 166-407 (428)
256 KOG1409 Uncharacterized conser 99.3 2.1E-10 4.6E-15 105.0 19.7 236 217-486 31-272 (404)
257 COG2706 3-carboxymuconate cycl 99.3 1.6E-08 3.5E-13 94.1 32.3 249 322-585 37-325 (346)
258 TIGR02800 propeller_TolB tol-p 99.3 9.6E-10 2.1E-14 113.5 27.4 227 232-506 170-416 (417)
259 KOG0280 Uncharacterized conser 99.3 5.7E-10 1.2E-14 100.1 21.4 270 231-530 45-335 (339)
260 COG4946 Uncharacterized protei 99.3 6.2E-09 1.3E-13 99.4 29.3 168 334-516 332-506 (668)
261 KOG2041 WD40 repeat protein [G 99.3 3.6E-10 7.8E-15 112.7 21.7 296 259-580 14-336 (1189)
262 KOG0974 WD-repeat protein WDR6 99.3 7.8E-11 1.7E-15 122.7 17.3 184 334-529 99-289 (967)
263 PRK01029 tolB translocation pr 99.3 1.7E-09 3.6E-14 110.5 26.3 218 258-510 183-426 (428)
264 PRK04792 tolB translocation pr 99.3 2.3E-09 5E-14 110.4 26.8 198 323-537 216-433 (448)
265 PRK00178 tolB translocation pr 99.3 2.2E-09 4.8E-14 110.9 26.7 192 323-530 197-408 (430)
266 KOG0280 Uncharacterized conser 99.2 2.3E-09 5E-14 96.3 20.6 247 323-585 68-337 (339)
267 PF04762 IKI3: IKI3 family; I 99.2 1.4E-08 3.1E-13 111.9 31.6 334 211-583 76-458 (928)
268 COG4946 Uncharacterized protei 99.2 2E-07 4.3E-12 89.4 34.3 168 376-570 334-507 (668)
269 COG5354 Uncharacterized protei 99.2 1.2E-08 2.6E-13 98.5 26.4 277 210-531 71-398 (561)
270 TIGR02658 TTQ_MADH_Hv methylam 99.2 6E-08 1.3E-12 94.2 31.6 226 342-586 76-335 (352)
271 KOG1064 RAVE (regulator of V-A 99.2 1.4E-10 2.9E-15 126.7 13.7 181 364-574 2252-2439(2439)
272 KOG1409 Uncharacterized conser 99.2 1E-09 2.2E-14 100.6 17.0 239 322-584 22-273 (404)
273 KOG1064 RAVE (regulator of V-A 99.2 1.2E-10 2.7E-15 127.0 12.0 181 216-436 2214-2400(2439)
274 KOG1832 HIV-1 Vpr-binding prot 99.2 3.3E-11 7.1E-16 122.7 7.1 324 134-517 1012-1378(1516)
275 KOG2041 WD40 repeat protein [G 99.2 1.8E-08 4E-13 100.9 25.9 278 213-528 17-337 (1189)
276 PLN02919 haloacid dehalogenase 99.2 4E-08 8.8E-13 110.6 31.7 255 328-585 571-892 (1057)
277 KOG4532 WD40-like repeat conta 99.2 1.2E-08 2.6E-13 90.5 21.0 240 264-530 72-333 (344)
278 KOG2314 Translation initiation 99.2 2.6E-08 5.7E-13 97.1 25.0 284 206-528 246-573 (698)
279 PRK04043 tolB translocation pr 99.1 3.8E-08 8.3E-13 99.8 27.4 209 344-583 170-402 (419)
280 KOG4190 Uncharacterized conser 99.1 2.4E-10 5.3E-15 110.6 10.5 282 256-577 732-1032(1034)
281 PLN02919 haloacid dehalogenase 99.1 1E-07 2.2E-12 107.4 31.9 258 263-532 571-892 (1057)
282 KOG4532 WD40-like repeat conta 99.1 2.3E-08 5.1E-13 88.7 21.0 242 334-585 84-335 (344)
283 KOG0309 Conserved WD40 repeat- 99.1 6.2E-10 1.4E-14 111.5 12.2 281 259-582 24-340 (1081)
284 PRK11138 outer membrane biogen 99.1 2E-07 4.4E-12 95.0 30.4 259 270-580 119-393 (394)
285 KOG1912 WD40 repeat protein [G 99.1 1.1E-08 2.4E-13 103.4 19.6 304 253-584 9-367 (1062)
286 KOG4190 Uncharacterized conser 99.1 4.3E-10 9.3E-15 108.9 8.6 220 356-596 728-963 (1034)
287 PF15492 Nbas_N: Neuroblastoma 99.1 1.8E-07 4E-12 84.6 24.3 224 369-598 3-278 (282)
288 PRK11138 outer membrane biogen 99.0 1.8E-07 3.8E-12 95.4 27.5 286 270-591 68-363 (394)
289 PF13360 PQQ_2: PQQ-like domai 99.0 9.1E-08 2E-12 90.4 23.8 225 342-588 2-237 (238)
290 KOG0309 Conserved WD40 repeat- 99.0 3.2E-09 6.9E-14 106.6 13.7 278 216-529 30-340 (1081)
291 COG5170 CDC55 Serine/threonine 99.0 7.8E-09 1.7E-13 93.5 13.9 259 258-529 25-368 (460)
292 PF04762 IKI3: IKI3 family; I 99.0 6.2E-07 1.3E-11 99.2 30.3 237 323-580 74-378 (928)
293 PF08450 SGL: SMP-30/Gluconola 98.9 4.3E-06 9.3E-11 79.3 30.3 219 264-517 4-244 (246)
294 KOG3914 WD repeat protein WDR4 98.9 1.4E-08 3E-13 95.5 12.5 161 407-587 65-229 (390)
295 PF13360 PQQ_2: PQQ-like domai 98.9 8.8E-07 1.9E-11 83.7 25.0 228 280-535 2-237 (238)
296 PF08450 SGL: SMP-30/Gluconola 98.9 8.1E-06 1.8E-10 77.4 31.3 212 329-567 4-241 (246)
297 COG5170 CDC55 Serine/threonine 98.9 1.7E-08 3.7E-13 91.4 11.2 254 323-582 25-368 (460)
298 PF07433 DUF1513: Protein of u 98.9 3.9E-06 8.3E-11 78.7 26.7 218 336-575 19-279 (305)
299 PRK04043 tolB translocation pr 98.9 1.9E-06 4.2E-11 87.5 26.7 195 260-492 188-407 (419)
300 PF07433 DUF1513: Protein of u 98.9 2.4E-06 5.1E-11 80.1 24.8 179 330-518 56-276 (305)
301 KOG3914 WD repeat protein WDR4 98.9 6.6E-08 1.4E-12 91.0 14.5 150 334-494 74-233 (390)
302 KOG2695 WD40 repeat protein [G 98.9 6.1E-09 1.3E-13 95.6 7.4 162 370-538 218-386 (425)
303 KOG0882 Cyclophilin-related pe 98.8 1.5E-07 3.3E-12 89.7 15.8 292 258-578 8-369 (558)
304 KOG1832 HIV-1 Vpr-binding prot 98.8 5.4E-09 1.2E-13 107.0 5.4 195 322-537 1099-1300(1516)
305 KOG1912 WD40 repeat protein [G 98.8 7.8E-07 1.7E-11 90.5 19.7 239 323-582 14-305 (1062)
306 PF15492 Nbas_N: Neuroblastoma 98.8 8.7E-06 1.9E-10 74.0 24.0 200 334-538 9-269 (282)
307 PF06433 Me-amine-dh_H: Methyl 98.7 9.1E-06 2E-10 77.1 24.1 268 232-538 17-330 (342)
308 KOG2695 WD40 repeat protein [G 98.7 2.6E-08 5.7E-13 91.6 6.9 159 330-495 217-387 (425)
309 KOG4714 Nucleoporin [Nuclear s 98.7 2.3E-07 5.1E-12 82.2 11.4 198 366-582 39-255 (319)
310 KOG4649 PQQ (pyrrolo-quinoline 98.7 4.4E-05 9.5E-10 68.2 25.3 138 271-433 23-164 (354)
311 cd00216 PQQ_DH Dehydrogenases 98.6 2.6E-05 5.6E-10 81.6 27.8 291 271-592 61-435 (488)
312 KOG4714 Nucleoporin [Nuclear s 98.6 3.6E-07 7.7E-12 81.1 11.1 157 258-435 88-255 (319)
313 KOG0882 Cyclophilin-related pe 98.6 3.9E-07 8.5E-12 86.9 11.5 215 362-586 8-236 (558)
314 cd00216 PQQ_DH Dehydrogenases 98.6 0.00019 4.1E-09 75.1 32.3 281 222-538 61-434 (488)
315 KOG1275 PAB-dependent poly(A) 98.6 1.1E-06 2.3E-11 91.2 14.9 179 334-526 147-340 (1118)
316 PF00400 WD40: WD domain, G-be 98.6 2.5E-07 5.3E-12 59.1 6.3 39 394-432 1-39 (39)
317 KOG1645 RING-finger-containing 98.6 1.6E-05 3.4E-10 75.2 20.5 240 322-582 191-462 (463)
318 KOG2114 Vacuolar assembly/sort 98.6 7.2E-06 1.6E-10 84.9 19.8 208 370-590 30-252 (933)
319 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00047 1E-08 61.8 28.0 147 218-394 18-167 (354)
320 KOG2066 Vacuolar assembly/sort 98.5 4.1E-06 8.9E-11 86.0 17.0 185 323-528 38-233 (846)
321 KOG1920 IkappaB kinase complex 98.5 0.00018 3.8E-09 77.8 28.3 196 324-531 68-325 (1265)
322 KOG2066 Vacuolar assembly/sort 98.5 7.3E-06 1.6E-10 84.2 16.9 187 365-581 41-233 (846)
323 KOG1920 IkappaB kinase complex 98.4 7.3E-05 1.6E-09 80.6 24.4 239 214-487 72-325 (1265)
324 PRK02888 nitrous-oxide reducta 98.4 3.5E-05 7.5E-10 79.2 20.3 187 334-529 141-405 (635)
325 PF00400 WD40: WD domain, G-be 98.4 9.3E-07 2E-11 56.4 6.0 38 353-390 1-39 (39)
326 PF11768 DUF3312: Protein of u 98.4 0.00013 2.8E-09 73.3 23.3 109 325-435 206-330 (545)
327 PF04053 Coatomer_WDAD: Coatom 98.4 8.1E-05 1.7E-09 75.5 22.4 222 258-529 31-263 (443)
328 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0017 3.6E-08 68.3 32.9 245 272-538 121-500 (527)
329 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.001 2.2E-08 69.9 31.1 295 271-592 69-501 (527)
330 PF14583 Pectate_lyase22: Olig 98.4 0.0019 4.1E-08 62.9 29.8 281 265-581 41-381 (386)
331 PF06433 Me-amine-dh_H: Methyl 98.3 0.00096 2.1E-08 63.7 26.5 243 217-495 42-331 (342)
332 KOG3621 WD40 repeat-containing 98.3 0.00016 3.4E-09 73.8 21.9 279 258-585 32-357 (726)
333 PF08596 Lgl_C: Lethal giant l 98.3 0.00042 9.2E-09 69.4 24.5 277 261-579 3-333 (395)
334 KOG1645 RING-finger-containing 98.3 5.4E-05 1.2E-09 71.8 16.4 233 345-589 175-427 (463)
335 KOG3617 WD40 and TPR repeat-co 98.3 2.7E-05 5.8E-10 80.4 15.5 102 331-434 22-131 (1416)
336 PF08513 LisH: LisH; InterPro 98.2 1.6E-06 3.4E-11 49.2 3.5 26 15-40 2-27 (27)
337 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.002 4.3E-08 64.5 28.3 268 268-570 1-346 (353)
338 PF11768 DUF3312: Protein of u 98.2 0.00076 1.6E-08 67.9 23.5 93 478-584 238-332 (545)
339 KOG1275 PAB-dependent poly(A) 98.1 5.9E-05 1.3E-09 78.7 14.8 149 327-483 180-341 (1118)
340 KOG2114 Vacuolar assembly/sort 98.1 0.00054 1.2E-08 71.5 21.6 204 326-537 27-252 (933)
341 PRK02888 nitrous-oxide reducta 98.1 0.00035 7.6E-09 72.0 19.5 174 217-435 199-405 (635)
342 COG0823 TolB Periplasmic compo 98.1 0.00068 1.5E-08 68.6 21.6 177 344-535 174-365 (425)
343 KOG1008 Uncharacterized conser 98.1 1.3E-06 2.8E-11 87.3 2.0 204 364-582 57-276 (783)
344 PF04053 Coatomer_WDAD: Coatom 98.1 0.0016 3.5E-08 66.2 23.8 220 325-584 33-265 (443)
345 KOG1008 Uncharacterized conser 98.1 5.2E-06 1.1E-10 83.1 5.5 248 323-580 55-334 (783)
346 COG3386 Gluconolactonase [Carb 98.0 0.004 8.8E-08 60.0 24.3 184 325-517 66-274 (307)
347 smart00667 LisH Lissencephaly 98.0 7.4E-06 1.6E-10 50.2 3.7 30 14-43 4-33 (34)
348 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0075 1.6E-07 61.4 26.9 182 344-537 62-255 (410)
349 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.009 1.9E-07 59.9 26.3 241 216-472 48-344 (353)
350 KOG2659 LisH motif-containing 97.9 2.9E-05 6.2E-10 68.9 6.6 83 8-97 24-118 (228)
351 PF08596 Lgl_C: Lethal giant l 97.8 0.0057 1.2E-07 61.4 22.5 245 216-482 7-333 (395)
352 KOG3621 WD40 repeat-containing 97.8 0.00026 5.7E-09 72.2 12.6 138 365-507 35-179 (726)
353 PF06977 SdiA-regulated: SdiA- 97.8 0.027 5.9E-07 52.5 25.0 200 258-481 20-247 (248)
354 smart00668 CTLH C-terminal to 97.8 4E-05 8.6E-10 53.8 4.7 52 45-97 4-55 (58)
355 PF04841 Vps16_N: Vps16, N-ter 97.8 0.037 8E-07 56.4 27.9 169 325-510 81-271 (410)
356 COG0823 TolB Periplasmic compo 97.8 0.0012 2.7E-08 66.8 16.9 166 394-584 182-361 (425)
357 PF06977 SdiA-regulated: SdiA- 97.8 0.019 4.2E-07 53.4 23.1 198 322-525 19-247 (248)
358 COG3391 Uncharacterized conser 97.7 0.018 3.8E-07 58.3 24.8 203 328-538 77-293 (381)
359 PF03178 CPSF_A: CPSF A subuni 97.7 0.013 2.7E-07 58.0 23.1 179 233-435 3-203 (321)
360 COG3391 Uncharacterized conser 97.7 0.068 1.5E-06 54.1 27.8 198 366-585 76-287 (381)
361 KOG3617 WD40 and TPR repeat-co 97.7 0.0012 2.5E-08 68.8 14.8 107 367-484 19-131 (1416)
362 PF08553 VID27: VID27 cytoplas 97.7 0.0028 6.2E-08 68.1 18.4 97 336-433 545-646 (794)
363 PF02897 Peptidase_S9_N: Proly 97.6 0.092 2E-06 54.0 29.1 242 261-533 125-409 (414)
364 PRK13616 lipoprotein LpqB; Pro 97.6 0.012 2.5E-07 62.5 22.3 201 364-592 350-579 (591)
365 PF08553 VID27: VID27 cytoplas 97.6 0.0016 3.5E-08 69.9 15.4 132 342-483 503-646 (794)
366 COG3490 Uncharacterized protei 97.6 0.032 6.9E-07 51.3 21.1 225 336-580 82-347 (366)
367 PF05096 Glu_cyclase_2: Glutam 97.6 0.018 3.8E-07 53.4 20.0 190 367-570 48-250 (264)
368 COG3386 Gluconolactonase [Carb 97.6 0.047 1E-06 52.8 23.6 204 342-570 46-274 (307)
369 PF03178 CPSF_A: CPSF A subuni 97.6 0.01 2.2E-07 58.7 19.7 181 384-582 2-203 (321)
370 PF00780 CNH: CNH domain; Int 97.5 0.092 2E-06 50.6 26.4 229 269-538 5-265 (275)
371 KOG2395 Protein involved in va 97.5 0.0061 1.3E-07 60.6 16.5 138 336-484 348-500 (644)
372 PF14583 Pectate_lyase22: Olig 97.5 0.12 2.6E-06 50.7 27.3 229 334-585 47-332 (386)
373 PF00780 CNH: CNH domain; Int 97.5 0.12 2.6E-06 49.8 26.0 224 334-587 7-261 (275)
374 KOG4640 Anaphase-promoting com 97.3 0.0011 2.3E-08 67.1 9.2 94 363-465 20-115 (665)
375 KOG1897 Damage-specific DNA bi 97.3 0.39 8.4E-06 52.0 30.5 316 224-584 550-901 (1096)
376 smart00320 WD40 WD40 repeats. 97.3 0.00088 1.9E-08 41.6 5.4 39 394-432 2-40 (40)
377 PHA02713 hypothetical protein; 97.2 0.029 6.3E-07 59.7 19.6 200 373-597 302-547 (557)
378 KOG2395 Protein involved in va 97.2 0.014 3.1E-07 58.1 14.9 144 376-527 348-499 (644)
379 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.022 4.7E-07 44.9 13.0 97 327-429 2-109 (111)
380 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.021 4.5E-07 45.0 12.8 97 262-387 2-109 (111)
381 KOG4499 Ca2+-binding protein R 97.1 0.088 1.9E-06 47.0 17.9 150 364-515 109-271 (310)
382 KOG4441 Proteins containing BT 97.1 0.093 2E-06 55.8 21.5 226 343-592 301-555 (571)
383 KOG4441 Proteins containing BT 97.1 0.1 2.2E-06 55.5 21.3 101 334-437 381-502 (571)
384 COG3490 Uncharacterized protei 97.0 0.19 4E-06 46.5 19.4 211 368-589 72-318 (366)
385 PRK13616 lipoprotein LpqB; Pro 97.0 0.067 1.5E-06 56.9 19.2 186 325-524 350-564 (591)
386 smart00320 WD40 WD40 repeats. 97.0 0.0024 5.2E-08 39.5 5.3 38 353-390 2-40 (40)
387 KOG4640 Anaphase-promoting com 97.0 0.0039 8.5E-08 63.2 9.0 90 324-414 20-115 (665)
388 TIGR03074 PQQ_membr_DH membran 96.9 0.29 6.4E-06 53.6 23.4 234 271-536 194-485 (764)
389 PF14870 PSII_BNR: Photosynthe 96.9 0.46 9.9E-06 45.8 33.9 278 259-578 16-301 (302)
390 PF02897 Peptidase_S9_N: Proly 96.9 0.7 1.5E-05 47.5 26.4 194 368-581 128-357 (414)
391 TIGR03074 PQQ_membr_DH membran 96.8 0.15 3.2E-06 55.9 20.3 230 334-590 194-486 (764)
392 PHA02713 hypothetical protein; 96.7 0.22 4.7E-06 53.1 20.2 185 334-533 304-538 (557)
393 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0077 1.7E-07 39.5 5.4 34 553-588 14-47 (47)
394 KOG2079 Vacuolar assembly/sort 96.5 0.089 1.9E-06 57.2 15.8 105 327-433 92-202 (1206)
395 KOG2079 Vacuolar assembly/sort 96.5 0.013 2.7E-07 63.3 9.0 98 416-521 99-198 (1206)
396 COG3204 Uncharacterized protei 96.4 0.83 1.8E-05 42.8 20.2 156 258-435 84-264 (316)
397 PF05096 Glu_cyclase_2: Glutam 96.4 0.82 1.8E-05 42.6 22.2 184 325-517 45-249 (264)
398 COG3204 Uncharacterized protei 96.3 0.4 8.7E-06 44.8 16.4 170 400-581 81-263 (316)
399 PF05694 SBP56: 56kDa selenium 96.2 1.5 3.2E-05 43.8 24.0 234 270-517 86-392 (461)
400 KOG2444 WD40 repeat protein [G 96.2 0.011 2.4E-07 52.6 5.7 105 419-536 33-140 (238)
401 KOG0396 Uncharacterized conser 96.1 0.0095 2.1E-07 56.5 5.5 80 16-97 118-206 (389)
402 PF12894 Apc4_WD40: Anaphase-p 96.1 0.021 4.6E-07 37.4 5.6 31 258-288 10-40 (47)
403 KOG2377 Uncharacterized conser 96.1 1.1 2.5E-05 44.3 19.2 154 218-394 29-187 (657)
404 PF14655 RAB3GAP2_N: Rab3 GTPa 96.0 2.1 4.4E-05 43.3 29.6 84 404-495 307-409 (415)
405 PRK13684 Ycf48-like protein; P 95.9 2 4.3E-05 42.6 30.7 157 404-581 172-331 (334)
406 PF10647 Gmad1: Lipoprotein Lp 95.9 0.9 1.9E-05 42.9 17.8 150 406-572 25-186 (253)
407 PF12234 Rav1p_C: RAVE protein 95.9 0.37 8.1E-06 50.9 16.2 113 458-581 32-156 (631)
408 COG4257 Vgb Streptogramin lyas 95.8 1.5 3.3E-05 40.5 18.2 202 365-584 63-265 (353)
409 KOG4499 Ca2+-binding protein R 95.7 1.5 3.2E-05 39.6 19.6 204 342-569 36-272 (310)
410 COG1520 FOG: WD40-like repeat 95.7 1.3 2.9E-05 44.6 19.6 204 373-592 67-279 (370)
411 PF12234 Rav1p_C: RAVE protein 95.7 0.39 8.5E-06 50.7 15.6 116 365-483 31-155 (631)
412 PF10168 Nup88: Nuclear pore c 95.5 4.2 9.1E-05 44.5 22.9 71 364-435 85-180 (717)
413 KOG2444 WD40 repeat protein [G 95.5 0.054 1.2E-06 48.3 7.2 102 334-435 70-178 (238)
414 PF14727 PHTB1_N: PTHB1 N-term 95.5 3.3 7.1E-05 42.0 31.8 281 271-587 37-366 (418)
415 PF10647 Gmad1: Lipoprotein Lp 95.5 2.3 5E-05 40.2 22.0 146 365-520 25-187 (253)
416 PF15390 DUF4613: Domain of un 95.5 0.73 1.6E-05 47.2 15.8 146 324-484 19-186 (671)
417 PHA03098 kelch-like protein; P 95.3 0.98 2.1E-05 48.3 17.8 182 385-590 312-518 (534)
418 PHA03098 kelch-like protein; P 95.3 1.4 3E-05 47.2 18.8 186 334-532 295-515 (534)
419 KOG1897 Damage-specific DNA bi 95.1 6.4 0.00014 43.2 32.2 312 217-582 590-943 (1096)
420 PF05694 SBP56: 56kDa selenium 95.1 3.7 8E-05 41.1 18.9 202 376-584 89-345 (461)
421 TIGR02604 Piru_Ver_Nterm putat 94.9 0.98 2.1E-05 45.5 15.3 150 405-573 14-205 (367)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 94.8 5.2 0.00011 40.5 26.9 40 498-537 307-346 (415)
423 PF15390 DUF4613: Domain of un 94.8 2.9 6.3E-05 43.1 17.5 157 364-530 20-188 (671)
424 TIGR03118 PEPCTERM_chp_1 conse 94.7 4 8.7E-05 38.7 23.9 205 326-537 24-288 (336)
425 KOG2280 Vacuolar assembly/sort 94.6 5.2 0.00011 42.5 19.3 171 326-509 85-270 (829)
426 PLN00033 photosystem II stabil 94.6 5.3 0.00011 40.4 19.3 153 367-525 242-396 (398)
427 PF10168 Nup88: Nuclear pore c 94.5 1.1 2.4E-05 48.9 15.3 89 498-589 84-187 (717)
428 PF14870 PSII_BNR: Photosynthe 94.5 4.9 0.00011 38.8 34.0 159 360-525 141-301 (302)
429 PHA02790 Kelch-like protein; P 94.3 3.3 7.2E-05 43.4 18.1 183 334-531 272-473 (480)
430 KOG3630 Nuclear pore complex, 94.2 0.75 1.6E-05 50.7 12.7 124 342-472 123-260 (1405)
431 KOG1916 Nuclear protein, conta 93.8 0.037 8.1E-07 58.7 2.4 197 322-529 130-375 (1283)
432 TIGR02604 Piru_Ver_Nterm putat 93.7 3.5 7.5E-05 41.6 16.2 148 365-517 15-202 (367)
433 PF07995 GSDH: Glucose / Sorbo 93.5 8.5 0.00018 38.1 25.4 72 498-576 252-330 (331)
434 PF05935 Arylsulfotrans: Aryls 93.5 11 0.00023 39.6 19.9 146 382-539 126-312 (477)
435 PHA02790 Kelch-like protein; P 93.4 7.8 0.00017 40.7 18.8 97 334-435 363-471 (480)
436 KOG2280 Vacuolar assembly/sort 93.4 5.5 0.00012 42.4 16.8 147 383-537 63-255 (829)
437 COG3823 Glutamine cyclotransfe 93.1 5.7 0.00012 35.3 14.0 180 329-516 50-247 (262)
438 PF13449 Phytase-like: Esteras 93.1 9.9 0.00021 37.5 18.4 173 405-581 20-249 (326)
439 PF03022 MRJP: Major royal jel 93.0 8.9 0.00019 37.0 17.2 168 344-516 35-253 (287)
440 COG5167 VID27 Protein involved 92.9 2 4.3E-05 43.3 12.4 131 342-484 489-632 (776)
441 KOG3630 Nuclear pore complex, 92.9 0.59 1.3E-05 51.5 9.5 141 366-516 103-261 (1405)
442 PRK10115 protease 2; Provision 92.9 18 0.00038 40.0 30.3 239 325-584 127-397 (686)
443 PF14781 BBS2_N: Ciliary BBSom 92.9 4.6 0.0001 33.2 13.6 109 370-490 5-131 (136)
444 COG3823 Glutamine cyclotransfe 92.9 4.8 0.0001 35.8 13.2 179 376-569 58-247 (262)
445 PF05935 Arylsulfotrans: Aryls 92.7 3.5 7.6E-05 43.1 14.9 130 461-593 153-313 (477)
446 KOG3616 Selective LIM binding 92.7 8.5 0.00018 40.9 16.8 167 214-395 18-196 (1636)
447 KOG4460 Nuclear pore complex, 92.6 2.1 4.5E-05 43.3 12.0 91 499-592 104-209 (741)
448 TIGR03118 PEPCTERM_chp_1 conse 92.6 9.8 0.00021 36.2 19.8 209 365-584 24-282 (336)
449 PF08728 CRT10: CRT10; InterP 92.5 4.4 9.5E-05 43.6 15.1 107 326-433 102-245 (717)
450 PF07569 Hira: TUP1-like enhan 92.3 1 2.2E-05 41.3 9.3 74 412-488 18-99 (219)
451 COG1520 FOG: WD40-like repeat 92.2 14 0.0003 37.3 24.1 198 334-538 68-278 (370)
452 KOG2247 WD40 repeat-containing 91.6 0.03 6.5E-07 55.4 -1.6 146 407-578 37-185 (615)
453 PF07995 GSDH: Glucose / Sorbo 91.6 4.5 9.7E-05 40.1 13.6 112 457-574 3-136 (331)
454 PLN00033 photosystem II stabil 91.2 18 0.0004 36.6 33.6 111 456-578 281-396 (398)
455 COG4590 ABC-type uncharacteriz 91.1 4.6 0.0001 40.2 12.4 162 405-585 221-390 (733)
456 PF10313 DUF2415: Uncharacteri 91.0 0.78 1.7E-05 29.2 4.7 31 260-290 1-34 (43)
457 PRK13684 Ycf48-like protein; P 90.9 18 0.00039 35.9 30.6 154 363-526 172-329 (334)
458 PF10313 DUF2415: Uncharacteri 90.8 0.84 1.8E-05 29.0 4.7 31 405-435 1-34 (43)
459 PF13449 Phytase-like: Esteras 90.8 18 0.00039 35.7 21.7 152 363-515 19-231 (326)
460 PF14781 BBS2_N: Ciliary BBSom 90.7 8.4 0.00018 31.7 12.0 117 411-536 5-133 (136)
461 COG3292 Predicted periplasmic 90.6 23 0.0005 36.7 18.5 271 259-576 164-442 (671)
462 KOG2817 Predicted E3 ubiquitin 89.8 1.4 3E-05 43.0 7.6 80 16-97 119-209 (394)
463 PF14727 PHTB1_N: PTHB1 N-term 89.5 26 0.00057 35.6 28.3 151 221-391 36-203 (418)
464 TIGR03606 non_repeat_PQQ dehyd 89.4 15 0.00033 37.7 15.2 112 404-519 29-166 (454)
465 PF14761 HPS3_N: Hermansky-Pud 89.4 16 0.00035 33.0 16.6 115 368-486 22-165 (215)
466 PF10607 CLTH: CTLH/CRA C-term 89.3 0.46 9.9E-06 40.5 3.8 51 46-97 5-55 (145)
467 PF08728 CRT10: CRT10; InterP 89.2 19 0.0004 39.1 16.0 143 334-483 49-245 (717)
468 PF10214 Rrn6: RNA polymerase 89.1 43 0.00093 37.6 27.4 123 405-530 146-278 (765)
469 PF02333 Phytase: Phytase; In 88.8 27 0.00059 34.9 22.2 191 376-583 70-292 (381)
470 PF07569 Hira: TUP1-like enhan 88.7 2.5 5.3E-05 38.9 8.3 75 506-583 18-97 (219)
471 COG5276 Uncharacterized conser 88.5 23 0.00049 33.6 24.7 152 324-485 86-242 (370)
472 KOG1900 Nuclear pore complex, 88.2 6.3 0.00014 44.8 12.2 144 381-529 96-273 (1311)
473 PRK10115 protease 2; Provision 88.1 47 0.001 36.7 32.0 239 261-531 128-397 (686)
474 TIGR03606 non_repeat_PQQ dehyd 88.0 17 0.00036 37.4 14.4 54 457-510 31-90 (454)
475 PF09398 FOP_dimer: FOP N term 87.9 0.72 1.6E-05 34.2 3.4 31 14-44 19-49 (81)
476 KOG1916 Nuclear protein, conta 87.7 1.4 3.1E-05 47.4 6.7 68 371-438 243-327 (1283)
477 KOG2377 Uncharacterized conser 87.6 18 0.00039 36.3 13.5 103 456-570 67-172 (657)
478 KOG1896 mRNA cleavage and poly 87.5 40 0.00087 38.4 17.4 153 272-435 1047-1214(1366)
479 COG5290 IkappaB kinase complex 87.4 18 0.00038 39.0 14.1 134 368-511 206-349 (1243)
480 COG5167 VID27 Protein involved 87.4 29 0.00064 35.4 15.0 100 335-435 529-633 (776)
481 PF07250 Glyoxal_oxid_N: Glyox 87.3 7.6 0.00016 36.1 10.6 144 346-493 49-206 (243)
482 PF14761 HPS3_N: Hermansky-Pud 86.6 22 0.00047 32.1 12.5 56 218-279 23-79 (215)
483 PF12657 TFIIIC_delta: Transcr 86.5 5.3 0.00012 35.2 8.9 37 553-589 88-130 (173)
484 smart00036 CNH Domain found in 85.9 36 0.00078 33.1 26.1 234 270-537 12-279 (302)
485 TIGR03032 conserved hypothetic 85.7 35 0.00076 32.8 21.6 107 388-510 189-316 (335)
486 COG2979 Uncharacterized protei 85.2 2.4 5.2E-05 37.3 5.7 80 4-96 123-203 (225)
487 TIGR02276 beta_rpt_yvtn 40-res 85.2 3.4 7.4E-05 26.0 5.3 31 465-495 1-33 (42)
488 KOG2247 WD40 repeat-containing 84.1 0.16 3.5E-06 50.5 -2.0 144 259-428 34-182 (615)
489 PF12657 TFIIIC_delta: Transcr 84.0 5.5 0.00012 35.1 7.8 31 405-435 86-122 (173)
490 KOG4460 Nuclear pore complex, 83.9 56 0.0012 33.7 19.1 73 365-437 105-201 (741)
491 COG5290 IkappaB kinase complex 83.8 71 0.0015 34.8 16.5 100 457-569 248-355 (1243)
492 COG5276 Uncharacterized conser 82.7 45 0.00097 31.7 28.3 265 222-527 96-368 (370)
493 smart00564 PQQ beta-propeller 81.4 2.5 5.5E-05 24.9 3.3 26 564-589 7-32 (33)
494 PF07250 Glyoxal_oxid_N: Glyox 81.2 25 0.00054 32.8 11.1 145 386-537 48-206 (243)
495 KOG2714 SETA binding protein S 80.5 67 0.0014 32.2 14.4 78 342-435 244-333 (465)
496 KOG1983 Tomosyn and related SN 80.4 82 0.0018 36.4 17.0 69 457-532 200-268 (993)
497 KOG1898 Splicing factor 3b, su 79.4 1.2E+02 0.0025 34.4 18.7 178 385-583 854-1050(1205)
498 PF02333 Phytase: Phytase; In 78.5 77 0.0017 31.8 24.5 194 269-492 66-299 (381)
499 PF07676 PD40: WD40-like Beta 77.8 6.2 0.00014 24.4 4.4 29 258-286 7-38 (39)
500 PF03088 Str_synth: Strictosid 77.5 16 0.00035 27.8 7.2 45 423-477 34-78 (89)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-64 Score=460.97 Aligned_cols=464 Identities=17% Similarity=0.246 Sum_probs=370.2
Q ss_pred CCCcceecchhhhhHHHHHHHHHhhhcHHHHHHHHHhhcCccc---cHHHHHHHHhcCCHHHHHHHHhhcccCCCCCcce
Q 007306 2 HGSKMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFF---NVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK 78 (608)
Q Consensus 2 ~~~~~~~~~~~~~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~---~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~ 78 (608)
.|++|.|.+-|+ +|++.|+|..+||.+|+.+||.|+|+.+ +...|.++|+.|+|+.++..+..+..-++..++.
T Consensus 9 l~~k~likk~ef---i~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~e 85 (519)
T KOG0293|consen 9 LGSKGLIKKGEF---IRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKE 85 (519)
T ss_pred hhhhceeccchh---hHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhhhHH
Confidence 589999999999 8999999999999999999999999988 3999999999999999999998874344566778
Q ss_pred eehhHHhhhHHHHHHhhcC-----------CCccchh-hhhchhhhhhhh---------------hccCcccccccCC--
Q 007306 79 KMFFELRKHKYCEALCRQQ-----------KLPSDFA-ERAHLFDDFKVL---------------VERNPMLQDKLKF-- 129 (608)
Q Consensus 79 ~~~~~i~~~~~le~l~~~~-----------~~~~~~~-~~~~~~~~~~~~---------------~~~~~~l~~~l~~-- 129 (608)
+.|| +.+|+|||++..+. ..+++.. ++.|.+.+.... ...|..|+++|+.
T Consensus 86 a~fL-v~kQ~fLEf~k~~~is~al~~l~~~~~~lr~~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi 164 (519)
T KOG0293|consen 86 AMFL-VNKQIFLEFLKTGSISHALPVLRNPVLYLRKNKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYI 164 (519)
T ss_pred HHHH-HHHHHHHHHHhhccHhhhhHhhhcchhhhhhhHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhC
Confidence 8999 99999999998744 2333333 333433332221 3345556666632
Q ss_pred -C-cc-chHHHHHHHHhhcceeeeeeecccCCCCCccccccCCceeeeccccccccccCCCCCCcccccccCCccccccc
Q 007306 130 -P-SM-DKSRLLSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSC 206 (608)
Q Consensus 130 -~-~~-p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (608)
| .+ |++||++||+||+++|++.|. ||+..+. +| +
T Consensus 165 ~p~illP~rRLehLl~qAv~~Q~d~cv--yhnslds-vs----------------------------------------l 201 (519)
T KOG0293|consen 165 PPNILLPKRRLEHLLEQAVKYQRDSCV--YHNSLDS-VS----------------------------------------L 201 (519)
T ss_pred CHhhcCChHHHHHHHHHHHHHHHhHhH--Hhcccch-hh----------------------------------------h
Confidence 3 33 999999999999999999999 9984211 11 4
Q ss_pred ccCCCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEE
Q 007306 207 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 286 (608)
Q Consensus 207 ~~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw 286 (608)
+.+|.|...-. |.+..+ .+.+ |.++||-+.||++|+|||+++.|.+..||
T Consensus 202 l~Dh~c~~~qi---------------------------p~qt~q-il~~--htdEVWfl~FS~nGkyLAsaSkD~Taiiw 251 (519)
T KOG0293|consen 202 LSDHFCGRLQI---------------------------PSQTWQ-ILQD--HTDEVWFLQFSHNGKYLASASKDSTAIIW 251 (519)
T ss_pred hhhcccCcccC---------------------------Cchhhh-hHhh--CCCcEEEEEEcCCCeeEeeccCCceEEEE
Confidence 55554444100 111111 1433 99999999999999999999999999999
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEec-CC
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP 362 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~ 362 (608)
++... .. -++..+.. +|..+|..+.|| +++|++|+ +..+.+||+.+|.+...+. ++
T Consensus 252 ~v~~d-----------------~~-~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~ 311 (519)
T KOG0293|consen 252 IVVYD-----------------VH-FKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGL 311 (519)
T ss_pred EEecC-----------------cc-eeeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCc
Confidence 86333 22 12222222 799999999999 88999999 9999999999999988886 44
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCc-cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 440 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 440 (608)
...+.+++|.||| .+++|+.|+++..||++ |.....+++- ...|.+++.++||+++++.+.|..|++++..+..
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--- 387 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--- 387 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh---
Confidence 6788999999999 99999999999999987 4556666653 3569999999999999999999999999988722
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEc
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 518 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~~ 518 (608)
... +...+ .+|+++++|.|++++++. .+..+++||++..+.++.+.++.....+..-||. .+..++++||+
T Consensus 388 --dr~-lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 388 --DRG-LISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred --hhc-ccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 221 22233 479999999999999996 8999999999988899999876667788888897 45689999999
Q ss_pred CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 519 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 519 dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
|+.|+||+..+|+++..+. || ... |++|+|+|.+..++|+||+||+||||.+...
T Consensus 461 D~kvyIWhr~sgkll~~Ls-------GH-s~~--vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLS-------GH-SKT--VNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CceEEEEEccCCceeEeec-------CC-cce--eeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999987 55 333 5599999999999999999999999998754
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-64 Score=447.49 Aligned_cols=459 Identities=20% Similarity=0.315 Sum_probs=375.6
Q ss_pred hhhHHHHHHHHHhhhcHHHHHHHHHhhcCcccc----HHHHHHHHhcCCHHHHHHHHhhcccCCCCCcceeehhHHhhhH
Q 007306 13 YTHLITLIMKFLEEENFKESLQALEQESKIFFN----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHK 88 (608)
Q Consensus 13 ~~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 88 (608)
..|+||||.|||+|+.+.++.++||+|.+++|| +..|.+.|-+|+||.++..+++| ++|+.. ++.++||-
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~kk-----L~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDKK-----LIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchhH-----HHHHHHHH
Confidence 347799999999999999999999999999997 89999999999999999999999 777654 34466777
Q ss_pred HHHHHhhcC-------------------CCccchhhhhchhhh-----hhhh-----hccCccccccc--CCCccchHHH
Q 007306 89 YCEALCRQQ-------------------KLPSDFAERAHLFDD-----FKVL-----VERNPMLQDKL--KFPSMDKSRL 137 (608)
Q Consensus 89 ~le~l~~~~-------------------~~~~~~~~~~~~~~~-----~~~~-----~~~~~~l~~~l--~~~~~p~~rL 137 (608)
.+|+++..| ..|++|..+++++.. .+.+ +++|..+++.+ ++..+||+||
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~EV~VVppSRL 160 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGEVHVVPPSRL 160 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCceEEcChHHH
Confidence 777666644 678899887776433 2222 56777788877 6788899999
Q ss_pred HHHHHhhcceeeeeeecccCCCCCccccccCCceeeeccccccccccCCCCCCcccccccCCcccccccccCCCCceeEe
Q 007306 138 LSLIKQIMDWWVPYCINVMPNANNETISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSREST 217 (608)
Q Consensus 138 ~~ll~qa~~~q~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (608)
+.||+||++||. .+|++|| |+.+++|+|..+....
T Consensus 161 laLlGQaLKWQq--HQGLLPP-------------------------------Gt~iDLFRGkAA~K~~------------ 195 (508)
T KOG0275|consen 161 LALLGQALKWQQ--HQGLLPP-------------------------------GTTIDLFRGKAAMKDQ------------ 195 (508)
T ss_pred HHHHHHHhhhHh--hcCCCCC-------------------------------Cceeeeccchhhhhhh------------
Confidence 999999999999 8999999 8999999987662110
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~ 297 (608)
.++.-.+...+.+. -|..+.+-|..|||||+||++|+.||.|.+|+..+++...+
T Consensus 196 ---------------------~Ee~~Pt~l~r~IK---Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKD- 250 (508)
T KOG0275|consen 196 ---------------------EEERYPTQLARSIK---FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKD- 250 (508)
T ss_pred ---------------------HhhhchHHhhhhee---cccccchhheeeCCCCceEeeccccceeeeehhccchhhhh-
Confidence 00000011111221 23577899999999999999999999999999998876433
Q ss_pred cccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEec-CCCCCeEEEEEcC
Q 007306 298 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLP 373 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~ 373 (608)
.-|......++ ++.+|.|+.|+ ...+++|+ ||.|++|.+.+|.|++.|. .|..+|+|+.|+.
T Consensus 251 -------LkYQAqd~fMM-------md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr 316 (508)
T KOG0275|consen 251 -------LKYQAQDNFMM-------MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR 316 (508)
T ss_pred -------hhhhhhcceee-------cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc
Confidence 12233333332 78999999999 67999999 9999999999999999998 8999999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC
Q 007306 374 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 452 (608)
Q Consensus 374 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 452 (608)
|+ .+++++.|.++++..+.+|++++.++||.+.|+...|++||..+++++.||+|++|+..+.+ ++.++.....
T Consensus 317 D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte-----C~~Tfk~~~~ 391 (508)
T KOG0275|consen 317 DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE-----CLSTFKPLGT 391 (508)
T ss_pred CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh-----hhhhccCCCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999854 4443332222
Q ss_pred CCccceEEEEEcCCC-CEEEEE-eCCcEEEEECCCCceeeeecCCCC-CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 453 PETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 453 ~~~~~v~~v~~sp~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
. .+|+++..-|.+ ..++++ ..++++|.++ .|+.++++..+.. .+...+++.||.|.++++.++|+.++.|.+.+
T Consensus 392 d--~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 392 D--YPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred c--ccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 2 678888887764 455555 7889999999 6888998876532 56788899999999999999999999999999
Q ss_pred CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 530 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
|++..++..+ .. .++.++.+| ..+.+|+-+.||.+++|.+
T Consensus 469 G~LE~tl~Vh--------Ek--dvIGl~HHP-HqNllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 469 GKLERTLPVH--------EK--DVIGLTHHP-HQNLLASYSEDGLLKLWKP 508 (508)
T ss_pred Cceeeeeecc--------cc--cccccccCc-ccchhhhhcccchhhhcCC
Confidence 9999888754 22 255899999 6899999999999999974
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-53 Score=385.72 Aligned_cols=316 Identities=20% Similarity=0.262 Sum_probs=278.5
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
+.+.|+|+|+.||+|+.|.++|+||+.+. ...++.. ||...|.|++|||||+.||+|+.||+|++||.+++++
T Consensus 119 l~~~fsp~g~~l~tGsGD~TvR~WD~~Te-----Tp~~t~K--gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 119 LSVQFSPTGSRLVTGSGDTTVRLWDLDTE-----TPLFTCK--GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred EEEEecCCCceEEecCCCceEEeeccCCC-----Ccceeec--CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 34689999999999999999999999852 2223343 4999999999999999999999999999887766654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-------CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCC
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 365 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-------~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 365 (608)
+-..+. +|...|++++|. .++|++++ ||.|+|||+..++++..+.+|..+
T Consensus 192 ---------------------~g~~l~-gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 192 ---------------------IGRALR-GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred ---------------------cccccc-CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 211122 799999999998 56899999 999999999999999999999999
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe-----------CCC------------------
Q 007306 366 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-----------LSL------------------ 416 (608)
Q Consensus 366 v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------~~~------------------ 416 (608)
|+|+.|--+|+|++|+.|++|++|+...|.+.+.+++|...|+.++.+ |.+
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 999999988899999999999999999999999999999999999876 223
Q ss_pred -------CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce
Q 007306 417 -------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 488 (608)
Q Consensus 417 -------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 488 (608)
..|++|+.|.++.+|+....+ +++. ...+|. ..|+.+.||||++++++ +.|.+|++||.++|+.
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~k----kpi~-rmtgHq---~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSK----KPIT-RMTGHQ---ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccc----cchh-hhhchh---hheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 359999999999999976532 4555 566888 79999999999999999 6999999999999999
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
+.+|.+ |-..|+.++|+.|.++|++|+.|.++++|++.+.++...++ || ...++ ++.|+| ||..+++
T Consensus 402 lasfRG--Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-------Gh-~DEVf--~vDwsp-DG~rV~s 468 (480)
T KOG0271|consen 402 LASFRG--HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-------GH-ADEVF--AVDWSP-DGQRVAS 468 (480)
T ss_pred hhhhhh--ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-------CC-CceEE--EEEecC-CCceeec
Confidence 999975 69999999999999999999999999999999999888776 66 55677 999999 8999999
Q ss_pred EeCCCcEEEEe
Q 007306 569 GLTNGRVHVIE 579 (608)
Q Consensus 569 ~s~Dg~v~iW~ 579 (608)
|+.|..+++|.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
No 4
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-46 Score=349.24 Aligned_cols=321 Identities=15% Similarity=0.182 Sum_probs=268.6
Q ss_pred eeEeecCCCC-eEEEeecCCeEEEeeccCCCCCCc-------eeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEE
Q 007306 214 RESTSLPDAD-SAVCAKSLEKSVNLKLQLINEPSE-------CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 285 (608)
Q Consensus 214 ~~~~~s~dg~-~l~~~~~d~~i~iWd~~~~~~~~~-------~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~i 285 (608)
....|.|-.. .+++++.|-+.++|++........ +...-..+......|++++|+.+|..||+|+.||.++|
T Consensus 182 ~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri 261 (524)
T KOG0273|consen 182 FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI 261 (524)
T ss_pred EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence 3457999888 899999999999999874110110 11100111113468999999999999999999999999
Q ss_pred EecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCC
Q 007306 286 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 362 (608)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~ 362 (608)
|+...... ..+ ..|+++|.++.|+ |.+|++++ |+++.+||..+|+..+.+.-|
T Consensus 262 w~~~G~l~----------------------~tl--~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 262 WNKDGNLI----------------------STL--GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred EecCchhh----------------------hhh--hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 98655432 111 1599999999999 99999999 999999999999999999988
Q ss_pred CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 363 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 363 ~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
..+-..+.|-.+..|++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.|.+|++++.|+++++|..... .
T Consensus 318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----~ 392 (524)
T KOG0273|consen 318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----N 392 (524)
T ss_pred cCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----c
Confidence 88867889977778999999999999999999999999999999999999999999999999999999997662 2
Q ss_pred ceeeeeccCCCCccceEEEEEcCCC---------CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCE
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQ---------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 512 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~---------~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 512 (608)
... -+.+|. ..|..+.|+|+| ..+++ +.|++|++||+..+.++.+|.. |..+|++++|||+|++
T Consensus 393 ~~~-~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k--H~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 393 SVH-DLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK--HQEPVYSVAFSPNGRY 466 (524)
T ss_pred chh-hhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--CCCceEEEEecCCCcE
Confidence 333 334676 689999999976 34555 6999999999999999999864 7999999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 513 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 513 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+|+|+.||.|.+|+.+++++.+.+.. ...|. .++|+- +|+.|..+-.||.+++-|+.
T Consensus 467 lAsGs~dg~V~iws~~~~~l~~s~~~---------~~~If--el~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGKLVKSYQG---------TGGIF--ELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecCCCCeeEeccccchheeEeecC---------CCeEE--EEEEcC-CCCEEEEEecCCCceEEEec
Confidence 99999999999999999999998863 33344 999999 78999999999999998874
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-44 Score=324.35 Aligned_cols=325 Identities=15% Similarity=0.189 Sum_probs=268.9
Q ss_pred eecccCCCCCccccccCCceeeecccc--ccccccCCCCCCcccccccCCcccccccccCCCCceeEeecCCCCeEEEee
Q 007306 152 CINVMPNANNETISLKDFPTVSNLRYA--SSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAK 229 (608)
Q Consensus 152 ~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 229 (608)
|..-++.-.+..++..-.++.+.+..- .+...++.+.+.+|..+.+||..-.. .++++|||+.||+|+
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVl----------cvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVL----------CVAWSPDGKKIASGS 176 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEE----------EEEECCCcchhhccc
Confidence 444444433344443222333333332 66677788888888888888887322 247999999999999
Q ss_pred cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee-----CCCEEEEEeCCCcEEEEecCCCcceeeecccceee
Q 007306 230 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-----SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 304 (608)
Q Consensus 230 ~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp-----~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 304 (608)
.||+|++||... ++..--.|++ |...|++++|.| ..++||+++.||+++|||+..+.+
T Consensus 177 ~dg~I~lwdpkt----g~~~g~~l~g--H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~----------- 239 (480)
T KOG0271|consen 177 KDGSIRLWDPKT----GQQIGRALRG--HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC----------- 239 (480)
T ss_pred cCCeEEEecCCC----CCcccccccC--cccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-----------
Confidence 999999999984 4444444654 999999999987 567999999999999998876654
Q ss_pred EEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEc----------
Q 007306 305 QLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL---------- 372 (608)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---------- 372 (608)
+.... +|..+|+|+.|- ..++++++ |++|++|+...|.+.+.+++|...|+.++.+
T Consensus 240 ----------~~~ls--gHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf 307 (480)
T KOG0271|consen 240 ----------VRTLS--GHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF 307 (480)
T ss_pred ----------EEEec--cCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence 11111 799999999999 88999999 9999999999999999999999999988877
Q ss_pred -CCC--------------------------eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCCCCEEEEEcC
Q 007306 373 -PQD--------------------------LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGA 424 (608)
Q Consensus 373 -~~~--------------------------~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 424 (608)
|.+ .+++|++|.++.+|+.... +++..+.+|+.-|+.+.|+||++++|+++-
T Consensus 308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF 387 (480)
T KOG0271|consen 308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF 387 (480)
T ss_pred ccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec
Confidence 222 4999999999999997654 588889999999999999999999999999
Q ss_pred CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEE
Q 007306 425 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITY 503 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 503 (608)
|+.|++||.++++ .+. .+.||. +.|..++|+.|.++|++ +.|.++++||+++.+....+. +|...|++
T Consensus 388 DkSVkLW~g~tGk-----~la-sfRGHv---~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp--Gh~DEVf~ 456 (480)
T KOG0271|consen 388 DKSVKLWDGRTGK-----FLA-SFRGHV---AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP--GHADEVFA 456 (480)
T ss_pred ccceeeeeCCCcc-----hhh-hhhhcc---ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC--CCCceEEE
Confidence 9999999999954 444 577888 79999999999999999 589999999999999887775 47999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEe
Q 007306 504 ATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 504 ~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
+.|+|||..+++|+.|..+++|.
T Consensus 457 vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 457 VDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.8e-44 Score=328.12 Aligned_cols=277 Identities=18% Similarity=0.157 Sum_probs=246.1
Q ss_pred CCCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeC--CCEEEEEeCCCcEEEE
Q 007306 209 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS--GDFLVALTQTATHKLW 286 (608)
Q Consensus 209 ~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~--g~~l~s~s~dg~i~iw 286 (608)
+......+.||+|++.|||||.+|.+++|+..+. .... +|. ||.+.|.++.|+|. +..+|||+.||++++|
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~---~~~~--~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw 246 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC---NLLQ--TLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLW 246 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc---ceeE--EEe--ccccceeeEEEccCCCccceeeeccCCceeee
Confidence 3333444589999999999999999999999742 2222 354 49999999999996 6689999999999999
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCC
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 363 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 363 (608)
++.+...+ -+ ..+|...|..++|+ |++|++++ |.+-++||+.++..+...++|.
T Consensus 247 ~~~~e~~l------------~~-----------l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 247 KLSQETPL------------QD-----------LEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS 303 (459)
T ss_pred ccCCCcch------------hh-----------hhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc
Confidence 88765441 11 11799999999999 99999999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 364 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
.+|.+++|.||| .+++|+.|..-+|||+++|+++..+.+|...|.+|+|+|+|..||+|+.|++++|||++. ..
T Consensus 304 ~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~-----r~ 378 (459)
T KOG0272|consen 304 KGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM-----RS 378 (459)
T ss_pred cccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecc-----cc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999998 34
Q ss_pred ceeeeeccCCCCccceEEEEEcC-CCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 520 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg 520 (608)
.+. +..+|. +-|+.|.|+| .|.+|++ +.|++++||..++..+++++.+ |.+.|.++.+++|++++++++.|.
T Consensus 379 ~ly-~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG--He~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 379 ELY-TIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG--HEGKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred cce-eccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC--CccceEEEEeccCCceEEEeccCc
Confidence 566 566787 7999999999 5778888 6999999999999999999975 799999999999999999999999
Q ss_pred eEEEEe
Q 007306 521 HVKVFD 526 (608)
Q Consensus 521 ~i~iwd 526 (608)
++++|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.4e-44 Score=328.29 Aligned_cols=279 Identities=15% Similarity=0.211 Sum_probs=252.8
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-C-
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G- 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~- 334 (608)
|.+.+|..+.||+|++.|+|||-+|.+++|+..+... +..+. +|...|.++.|+ +
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~---------------------~~~l~--gH~~~v~~~~fhP~~ 229 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL---------------------LQTLR--GHTSRVGAAVFHPVD 229 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce---------------------eEEEe--ccccceeeEEEccCC
Confidence 3588999999999999999999999999998766643 11111 799999999999 3
Q ss_pred --CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 335 --SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 335 --~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
..+++|+ ||++++|++.+..++..+.+|...|..++|+|+| +|++++.|.+-++||+.++..+....||...|.++
T Consensus 230 ~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~i 309 (459)
T KOG0272|consen 230 SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSI 309 (459)
T ss_pred CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccccccccee
Confidence 4899999 9999999999999999999999999999999999 99999999999999999999998899999999999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCcee
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 489 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~ 489 (608)
+|.|||..+++|+.|..-+|||++++ .++. ++.+|. .+|.+|+|+|+|-.|++ |.|++++|||++...++
T Consensus 310 af~~DGSL~~tGGlD~~~RvWDlRtg-----r~im-~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 310 AFQPDGSLAATGGLDSLGRVWDLRTG-----RCIM-FLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred EecCCCceeeccCccchhheeecccC-----cEEE-Eecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 99999999999999999999999995 4555 678898 79999999999999999 59999999999988887
Q ss_pred eeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 490 SQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
.++. .|..-|+.+.|+| .|.+|++++.|++++||...+..++..+. ||.+ . |.+++++| |+.+++|
T Consensus 381 y~ip--AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-------GHe~-k--V~s~Dis~-d~~~i~t 447 (459)
T KOG0272|consen 381 YTIP--AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-------GHEG-K--VISLDISP-DSQAIAT 447 (459)
T ss_pred eecc--cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhc-------CCcc-c--eEEEEecc-CCceEEE
Confidence 7775 5799999999998 78999999999999999999999999987 6633 3 55999999 8999999
Q ss_pred EeCCCcEEEEeC
Q 007306 569 GLTNGRVHVIEP 580 (608)
Q Consensus 569 ~s~Dg~v~iW~~ 580 (608)
++.|.++++|..
T Consensus 448 ~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 448 SSFDRTIKLWRP 459 (459)
T ss_pred eccCceeeeccC
Confidence 999999999963
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-40 Score=291.49 Aligned_cols=280 Identities=16% Similarity=0.223 Sum_probs=249.7
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
||.+.|.++.|++|+++++++|.||.+.|||.-+.... ..++ -....|..++|+ |
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~------------------haip-----l~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV------------------HAIP-----LPSSWVMTCAYSPSG 109 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce------------------eEEe-----cCceeEEEEEECCCC
Confidence 49999999999999999999999999999986544320 1111 256889999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCC------ceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccE
Q 007306 335 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 407 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 407 (608)
+++++|+ |+...||++.+. +..+.+.+|.+-+.|+.|.+|+.|++++.|.+..+||+++|+.+..|.+|.+.|
T Consensus 110 ~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 110 NFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred CeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccE
Confidence 9999999 999999999854 455678899999999999997799999999999999999999999999999999
Q ss_pred EEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCC
Q 007306 408 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 485 (608)
Q Consensus 408 ~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~ 485 (608)
.+++++| +++.+++|+-|+..++||++. ..+.+ .+.+|. +.|++++|.|+|.-+++| .|++.++||++.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~-----~~c~q-tF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRS-----GQCVQ-TFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccC-----cceeE-eecccc---cccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 9999999 999999999999999999999 45666 677888 799999999999999995 789999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCE
Q 007306 486 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 565 (608)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 565 (608)
.+.+..|....-..+|++++||..|++|++|..|..+.+||.-.++....+. || ... +.++..+| ||..
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-------GH-eNR--vScl~~s~-DG~a 329 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-------GH-ENR--VSCLGVSP-DGMA 329 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-------cc-CCe--eEEEEECC-CCcE
Confidence 9999888765557899999999999999999999999999999999988887 55 444 55999999 8999
Q ss_pred EEEEeCCCcEEEEe
Q 007306 566 IALGLTNGRVHVIE 579 (608)
Q Consensus 566 las~s~Dg~v~iW~ 579 (608)
++|||.|.++|||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 99999999999994
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-40 Score=289.08 Aligned_cols=295 Identities=17% Similarity=0.198 Sum_probs=250.3
Q ss_pred eecCCCCCCcEEEEEEeeC-CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEE
Q 007306 252 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 330 (608)
Q Consensus 252 ~l~~~~h~~~V~~~~fsp~-g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 330 (608)
+|++ |++.|+.++..+. -..+++++.|.++.+|++.... .+.|..++.+. ||+..|..+
T Consensus 10 tl~g--h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd----------------~~~G~~~r~~~--GHsH~v~dv 69 (315)
T KOG0279|consen 10 TLEG--HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD----------------IKYGVPVRRLT--GHSHFVSDV 69 (315)
T ss_pred eecC--CCceEEEEEeecCCCceEEEcccceEEEEEEeccCc----------------cccCceeeeee--ccceEecce
Confidence 3544 9999999999987 4678899999999999987663 34444444322 799999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-ccc
Q 007306 331 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQN 405 (608)
Q Consensus 331 ~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~ 405 (608)
..+ |++.++++ |+++++||+.+|+..+.|.+|...|.+++|++|+ ++++|+.|++|++|+...+.....-.. +.+
T Consensus 70 ~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~ 149 (315)
T KOG0279|consen 70 VLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE 149 (315)
T ss_pred EEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence 999 89999999 9999999999999999999999999999999999 999999999999999875544433333 378
Q ss_pred cEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEE
Q 007306 406 RITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 482 (608)
Q Consensus 406 ~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd 482 (608)
.|+|+.|+|+ ..++++++.|++|++||+++ ..+.+.+.+|. +.++.+++||||...++ +.||.+.+||
T Consensus 150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred cEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 9999999997 67899999999999999998 44444677888 89999999999999999 5999999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
++.++.+..+ +|...|.+++|+|+.-+|+.+. +..|+|||++++..+..+.+....+ ........++.++|++ |
T Consensus 221 L~~~k~lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-d 294 (315)
T KOG0279|consen 221 LNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-D 294 (315)
T ss_pred ccCCceeEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-C
Confidence 9999998877 4689999999999998887775 4559999999999888877543322 2224457788999999 8
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 007306 563 PNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~ 581 (608)
|..|.+|-.|+.|++|.+.
T Consensus 295 G~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 295 GQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CcEEEeeecCCcEEEEEee
Confidence 9999999999999999975
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=291.09 Aligned_cols=278 Identities=15% Similarity=0.179 Sum_probs=240.9
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.|++|.++|+++|.||.+.|||.-+ +.+...++| -...|..++|+|.|+++|+|+-|+...||++.+...
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~T---tnK~haipl----~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~-- 131 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFT---TNKVHAIPL----PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA-- 131 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEccc---ccceeEEec----CceeEEEEEECCCCCeEEecCcCceeEEEecccccc--
Confidence 47999999999999999999999876 444555445 467999999999999999999999999999875421
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 373 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 373 (608)
+....+...+. +|.+.+.|+.|- +..|++++ |.+..+||+++|+.+..|.+|.+.|.+++++|
T Consensus 132 --------------~g~~~v~r~l~-gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 132 --------------EGNVRVSRELA-GHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred --------------cccceeeeeec-CccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence 00001111111 799999999999 88999999 99999999999999999999999999999999
Q ss_pred -CC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC
Q 007306 374 -QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 374 -~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
++ .+++|+.|+..++||++.+.+++.|.+|...|+++.|.|+|.-+++|+.|++.++||++..+.... +. |
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~------ys-~ 269 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV------YS-H 269 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee------ec-c
Confidence 77 999999999999999999999999999999999999999999999999999999999998553221 11 2
Q ss_pred CCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 452 VPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
.+...+|++++||..|++|++| .|..+.+||.-.++.+..+. +|...|+++..+|||..+++|+.|..++||.
T Consensus 270 ~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 270 DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee--ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 2222689999999999999996 88999999998999888886 4799999999999999999999999999994
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-37 Score=293.05 Aligned_cols=354 Identities=15% Similarity=0.153 Sum_probs=268.2
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC----CcEEEEecCC
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQS 290 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d----g~i~iw~~~~ 290 (608)
...+||.|.|+|+|...|+|||||.... ..+....++- -.++|..++|++|++++++.+.. |.+.+||.-+
T Consensus 64 VAkySPsG~yiASGD~sG~vRIWdtt~~---~hiLKnef~v--~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 64 VAKYSPSGFYIASGDVSGKVRIWDTTQK---EHILKNEFQV--LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred EEEeCCCceEEeecCCcCcEEEEeccCc---ceeeeeeeee--cccccccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 3479999999999999999999998741 2222222222 47899999999999999988774 4666777643
Q ss_pred Ccceee--------------------ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 007306 291 NKQSLE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 347 (608)
Q Consensus 291 ~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~v 347 (608)
.--.+. ..+.+..+.+|+-.--++.. .+ +.|..-|+|+.|+ |.++++++ ||++.+
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~-s~-r~HskFV~~VRysPDG~~Fat~gsDgki~i 216 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKS-SF-REHSKFVNCVRYSPDGSRFATAGSDGKIYI 216 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeee-cc-cccccceeeEEECCCCCeEEEecCCccEEE
Confidence 321111 12333344555522212211 12 2588999999999 89999999 999999
Q ss_pred EEcCCCceeeEec---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-------------------------
Q 007306 348 FSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA------------------------- 398 (608)
Q Consensus 348 wd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~------------------------- 398 (608)
||-.+|+.+..+. +|.+.|.+++|+||+ .+++++.|.+++|||+.++++++
T Consensus 217 yDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV 296 (603)
T KOG0318|consen 217 YDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV 296 (603)
T ss_pred EcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence 9999999999998 899999999999999 99999999999999998765443
Q ss_pred ------------------EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecc------cc-----------
Q 007306 399 ------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS------KF----------- 443 (608)
Q Consensus 399 ------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------~~----------- 443 (608)
.+.||...|+++..+|++++|.+|+.||.|.-||..++..... ..
T Consensus 297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~ 376 (603)
T KOG0318|consen 297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE 376 (603)
T ss_pred EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence 2357999999999999999999999999999999976543210 00
Q ss_pred ---------eeee-------------eccCCC---------------------------------CccceEEEEEcCCCC
Q 007306 444 ---------LHSF-------------QTGLVP---------------------------------ETTIVNHIQFHPDQI 468 (608)
Q Consensus 444 ---------~~~~-------------~~~~~~---------------------------------~~~~v~~v~~sp~~~ 468 (608)
++.+ .-++.| ......+++++|++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 0000 000000 013455788999999
Q ss_pred EEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCc
Q 007306 469 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 547 (608)
Q Consensus 469 ~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~ 547 (608)
.+++ +.|+.++||.+..+..........|.++|+.++||||+.|||+|...+.+.+||+.+.+.....- +-|
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-------~FH 529 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-------AFH 529 (603)
T ss_pred EEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-------eee
Confidence 9999 59999999999776655444444689999999999999999999999999999999988632221 211
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 548 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 548 ~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
... +++++|+| +..++||||-|..|.||++..+..
T Consensus 530 tak--I~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 530 TAK--INCVAWSP-NNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred eee--EEEEEeCC-CceEEEeccccceEEEEEccChhh
Confidence 444 44999999 789999999999999999987653
No 12
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=304.41 Aligned_cols=328 Identities=20% Similarity=0.302 Sum_probs=266.3
Q ss_pred eeEeecCCCCeEEEeecC-CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 214 RESTSLPDADSAVCAKSL-EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d-~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
..+.|+..|.+||.|+.. |.+-+|+++. .. +.|+..||...+.++++||||+++|||+.||.|+|||..++-
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqs----Es---YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQS----ES---YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeec----cc---eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 345788999999999865 8999999973 22 225557799999999999999999999999999988876654
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCC-CCeEE
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATY 368 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~v~~ 368 (608)
+ ..+.. .|+..|+.+.|+ ++.+++.+ ||+|+.||+..++..+++..+. ....|
T Consensus 384 C---------------------~vTFt--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfsc 440 (893)
T KOG0291|consen 384 C---------------------FVTFT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSC 440 (893)
T ss_pred E---------------------EEEec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeE
Confidence 4 22211 599999999999 89999999 9999999999999999998654 46689
Q ss_pred EEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee
Q 007306 369 FILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 446 (608)
++..|.| .+.+|+.|. .|++|++++|+.+..+.||.++|.+++|+|++..|++++.|++|++||+-... ..+.+
T Consensus 441 vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~----~~vEt 516 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS----GTVET 516 (893)
T ss_pred EEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC----ceeee
Confidence 9999999 888888777 79999999999999999999999999999999999999999999999987632 22332
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCC------------------CCCCCeEEEEEe
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD------------------KMDLPITYATYS 507 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------------------~~~~~v~~~~~s 507 (608)
+... ..+..++|+|+|+.+++ ..||.|.+||...+..+..+.+. .....++.+++|
T Consensus 517 l~i~-----sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~yS 591 (893)
T KOG0291|consen 517 LEIR-----SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYS 591 (893)
T ss_pred Eeec-----cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEc
Confidence 2222 46899999999999999 58999999998766554333221 124689999999
Q ss_pred cCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec-------------------------------------cCC-----
Q 007306 508 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------------------------------QPG----- 545 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-------------------------------------~~g----- 545 (608)
+||.+|++|++.+.|.||++.++-+++.+...... .+|
T Consensus 592 aDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gd 671 (893)
T KOG0291|consen 592 ADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGD 671 (893)
T ss_pred CCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCC
Confidence 99999999999999999999998887776532211 001
Q ss_pred ----CcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 546 ----TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 546 ----~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
+....|.+..+.|+| .++-+|.++..| |.||.+.+
T Consensus 672 lssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~ 710 (893)
T KOG0291|consen 672 LSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT 710 (893)
T ss_pred ccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence 122356788999999 689999999887 66777654
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-38 Score=277.32 Aligned_cols=280 Identities=14% Similarity=0.191 Sum_probs=242.6
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.||++.|..+.|+|+|.+||||+.|..|.+|++..... ..|-++ +|+++|..+.|.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-----------N~~~lk-----------gHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-----------NFWVLK-----------GHSGAVMELHGMRD 101 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc-----------ceeeec-----------cccceeEeeeeccC
Confidence 45999999999999999999999999999998655443 122211 799999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
++.+++++ |.+++.||+++|++++.+++|..-|+++.-+.-| ++.+|+.|+++++||+++...++++. ....++++
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv 180 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAV 180 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEE
Confidence 88999999 9999999999999999999999999998866666 88899999999999999998888875 45689999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCC----
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT---- 485 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~---- 485 (608)
.|..++..+++|+-|+.|++||++.. ..+. +..||. ..|+.+..+|+|.++.+ +.|.++++||++-
T Consensus 181 ~f~d~s~qv~sggIdn~ikvWd~r~~-----d~~~-~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 181 GFKDTSDQVISGGIDNDIKVWDLRKN-----DGLY-TLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred EecccccceeeccccCceeeeccccC-----cceE-Eeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 99999999999999999999999873 4455 678998 79999999999999999 8999999999874
Q ss_pred CceeeeecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 486 LNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 486 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
.+++..+.++.| ......++|+|++..+.+|+.|..+++||..+...+..++ ||... |++++|+| ..
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-------Gh~gs---vn~~~Fhp-~e 320 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-------GHYGS---VNEVDFHP-TE 320 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-------Cccee---EEEeeecC-CC
Confidence 345777777666 3456678999999999999999999999999988777766 66333 44999999 68
Q ss_pred CEEEEEeCCCcEEEE
Q 007306 564 NRIALGLTNGRVHVI 578 (608)
Q Consensus 564 ~~las~s~Dg~v~iW 578 (608)
.+|.+++.|.+|++=
T Consensus 321 ~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 321 PIILSCSSDKTIYLG 335 (338)
T ss_pred cEEEEeccCceeEee
Confidence 999999999999863
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-37 Score=271.27 Aligned_cols=276 Identities=16% Similarity=0.218 Sum_probs=228.1
Q ss_pred ecCC-CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 218 SLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 218 ~s~d-g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
..+. -..+++++.|.++.+|++...+...-.....+. ||...|..+..++||++.++++.|+++++||+.+++..
T Consensus 23 ~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~--GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t-- 98 (315)
T KOG0279|consen 23 IKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT--GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST-- 98 (315)
T ss_pred eecCCCceEEEcccceEEEEEEeccCccccCceeeeee--ccceEecceEEccCCceEEeccccceEEEEEecCCcEE--
Confidence 4444 468899999999999999753222212222354 49999999999999999999999999999998776531
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCC--CCCeEEEEE
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP--PPIATYFIL 371 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~ 371 (608)
+.+. +|...|.+++|+ ++.+++|+ |.+|++||+.. .+..++..+ .+-|+|+.|
T Consensus 99 -------------------~~f~--GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 99 -------------------RRFV--GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred -------------------EEEE--ecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEE
Confidence 1111 799999999999 77999999 99999999984 444444433 788999999
Q ss_pred cCC--C-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 372 LPQ--D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 372 ~~~--~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
+|+ . .|++++.|++|++||+++-+....+.+|++.++.++++|||...++|+.||.+.+||++.++ .+. .+
T Consensus 157 sP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-----~ly-sl 230 (315)
T KOG0279|consen 157 SPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-----NLY-SL 230 (315)
T ss_pred cCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc-----eeE-ec
Confidence 999 5 99999999999999999999999999999999999999999999999999999999999844 455 22
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCC-------CCCeEEEEEecCCCEEEEEEcCCe
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGH 521 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~sg~~dg~ 521 (608)
++. ..|.+++|+|+.-.|+.+.+..|+|||+.++.++.++....- .....+++|++||..|++|..|+.
T Consensus 231 -~a~---~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 231 -EAF---DIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred -cCC---CeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 233 589999999998888888888899999999988877765321 234678999999999999999999
Q ss_pred EEEEeCCC
Q 007306 522 VKVFDTST 529 (608)
Q Consensus 522 i~iwd~~~ 529 (608)
|++|.+..
T Consensus 307 irv~qv~~ 314 (315)
T KOG0279|consen 307 IRVWQVAK 314 (315)
T ss_pred EEEEEeec
Confidence 99998753
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-36 Score=282.96 Aligned_cols=352 Identities=13% Similarity=0.089 Sum_probs=273.0
Q ss_pred cccccCCCCce-eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeec-CCCCCCcEEEEEEeeCCCEEEEEeCCC
Q 007306 204 SSCFNDNNQSR-ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP-DNSFGGRVVRLIYSHSGDFLVALTQTA 281 (608)
Q Consensus 204 ~~~~~~~~~~~-~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~-~~~h~~~V~~~~fsp~g~~l~s~s~dg 281 (608)
+.-|..|..-+ .+.|+|||.++++++.||+|.+||-.+ ++.... |. ..+|++.|.+++||||++.++|+|.|.
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt----ge~vg~-l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT----GEKVGE-LEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCC----ccEEEE-ecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 33444444432 468999999999999999999999884 444432 44 356999999999999999999999999
Q ss_pred cEEEEecCCCcceee----------------------ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 282 THKLWKWQSNKQSLE----------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 282 ~i~iw~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
+++|||+.+.++... ..+....+.++++..+....... ||...|++++.+ +++|
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~--GHnK~ITaLtv~~d~~~i 335 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS--GHNKSITALTVSPDGKTI 335 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec--ccccceeEEEEcCCCCEE
Confidence 999999988876543 12333445677777766443332 899999999999 8899
Q ss_pred EEEe-CCcEEEEEcCCCceeeEe-cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCce-------------------
Q 007306 338 FSAS-GGKISIFSLETFQTLATF-ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKT------------------- 396 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~------------------- 396 (608)
++|+ ||.|.-|+..+|..-+.. ++|...|.+++-+..+.+++.+.|.++++.++..+..
T Consensus 336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 9999 999999999998876655 6899999999988767788888899999997642210
Q ss_pred ------------EEEeeCc--------cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCcc
Q 007306 397 ------------KAKLKGH--------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 456 (608)
Q Consensus 397 ------------~~~~~~~--------~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 456 (608)
+..++.+ .....+++++|+++.++.|+.|+.|++|.+..+..... . ....|. +
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee---~-~~~~h~---a 488 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE---A-KLLEHR---A 488 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce---e-eeeccc---C
Confidence 0011111 12356889999999999999999999999987553211 1 233455 7
Q ss_pred ceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEE
Q 007306 457 IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQ 535 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 535 (608)
+|+++++|||+.+|+++ ..+.+.+||+.+.+...... .-|...|.+++|+|+..++|+|+-|..|.||+++.....-.
T Consensus 489 ~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred CceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 99999999999999997 78999999998887633322 23799999999999999999999999999999987654433
Q ss_pred EeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 536 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 536 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+.. .| ...++ .+.|-. ...+++.+.|..|++|++.
T Consensus 568 ikn------AH-~~gVn--~v~wld--e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 568 IKN------AH-LGGVN--SVAWLD--ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ecc------cc-ccCce--eEEEec--CceEEeccCcceeEEeccc
Confidence 321 33 33344 999985 6899999999999999974
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=295.54 Aligned_cols=343 Identities=14% Similarity=0.168 Sum_probs=277.1
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..+.|+.|.+++++|+.|-++++|+++.. ..+..+.+ .||.+.|..+-|..+...+++.+.||.+.+|.......
T Consensus 149 ~si~Ws~DSr~l~~gsrD~s~rl~~v~~~---k~~~~~~l--~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 149 TSIDWSDDSRLLVTGSRDLSARLFGVDGN---KNLFTYAL--NGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPP 223 (893)
T ss_pred eEEEeccCCceEEeccccceEEEEEeccc---cccceEec--cCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCc
Confidence 44689999999999999999999999863 33444445 45999999999999999999999999999998861100
Q ss_pred --ee-------------------------e---------eccccee-------------------eEEeeCCCCeeeecc
Q 007306 294 --SL-------------------------E---------EENVNME-------------------SQLYQPSSKLVMTND 318 (608)
Q Consensus 294 --~~-------------------------~---------~~~~~~~-------------------~~~~~~~~~~~~~~~ 318 (608)
.. . ..+.... ..+|+...-.+++.+
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L 303 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL 303 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe
Confidence 00 0 0000000 123333333333322
Q ss_pred ccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC
Q 007306 319 IAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 319 ~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~ 393 (608)
. -...+|..++|+ |.+|+.|+ -|++.||+..+...+...++|...+++++++||| ++++|++||.|+|||..+
T Consensus 304 S--is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 304 S--ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred e--cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 1 124678899999 99999999 3799999999999999999999999999999999 999999999999999999
Q ss_pred CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE
Q 007306 394 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 394 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 473 (608)
|-|..+|..|++.|+.+.|+..|+.+++.+.||+|+.||+.. .+..+++. ...| -...+++..|.|..+++|
T Consensus 382 gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-----YrNfRTft-~P~p--~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 382 GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-----YRNFRTFT-SPEP--IQFSCVAVDPSGELVCAG 453 (893)
T ss_pred ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-----cceeeeec-CCCc--eeeeEEEEcCCCCEEEee
Confidence 999999999999999999999999999999999999999987 34555332 2222 567799999999999986
Q ss_pred -eCC-cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC-ceeEEEeceeeccCCCcccc
Q 007306 474 -HEG-QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLE 550 (608)
Q Consensus 474 -~d~-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~g~~~~~ 550 (608)
.|. .|.+|++.+|+.+..+.+ |.++|.+++|+|+|..|++||.|.+|++||+-.. ....++.. .+.
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsG--HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---------~sd 522 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSG--HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---------RSD 522 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcC--CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---------ccc
Confidence 444 699999999999988864 7999999999999999999999999999998654 23334432 222
Q ss_pred cccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 551 LYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 551 v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
+++++|+| ||.-||+++-||.|.+||+..+..
T Consensus 523 --vl~vsfrP-dG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 523 --VLAVSFRP-DGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred --eeEEEEcC-CCCeEEEEEecceEEEEEhhhcee
Confidence 56999999 899999999999999999987654
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.6e-37 Score=263.10 Aligned_cols=274 Identities=13% Similarity=0.170 Sum_probs=225.8
Q ss_pred CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEE
Q 007306 272 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFS 349 (608)
Q Consensus 272 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd 349 (608)
-+|+++|.|.+|++|...++.+ ..+.. ..++.|+.+... ++.|++++...|++||
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C---------------------~rTiq--h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD 67 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC---------------------SRTIQ--HPDSQVNRLEITPDKKDLAAAGNQHVRLYD 67 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE---------------------EEEEe--cCccceeeEEEcCCcchhhhccCCeeEEEE
Confidence 4799999999999776665554 33322 356789999999 7788888899999999
Q ss_pred cCCCc--eeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC
Q 007306 350 LETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA 426 (608)
Q Consensus 350 ~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 426 (608)
+.++. ++.++.+|...|+++.|..+| .+++|++||+++|||++...+.+.++ |.++|+++..+|+...|++|..+|
T Consensus 68 ~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg 146 (311)
T KOG0315|consen 68 LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSG 146 (311)
T ss_pred ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCC
Confidence 98865 588999999999999999999 99999999999999999976666666 779999999999999999999999
Q ss_pred cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCc------eeeeecCCCCCC
Q 007306 427 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------HTSQLVPDKMDL 499 (608)
Q Consensus 427 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~------~~~~~~~~~~~~ 499 (608)
.|++||+........ . +++.. .+|.++...|||+++++. ..|..++|++-+.. ++..+. .|.+
T Consensus 147 ~irvWDl~~~~c~~~-l---iPe~~----~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~--ah~~ 216 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHE-L---IPEDD----TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ--AHNG 216 (311)
T ss_pred cEEEEEccCCccccc-c---CCCCC----cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee--cccc
Confidence 999999988432111 1 22222 479999999999999996 77999999986543 444454 4689
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEeCCCC-ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEE
Q 007306 500 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 578 (608)
Q Consensus 500 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 578 (608)
.+..+.+|||+++|+++|.|.+++||+.++. +....+. || ..-++ .++||. |+.||+||+.|+.+++|
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~-------gh-~rWvW--dc~FS~-dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT-------GH-QRWVW--DCAFSA-DGEYLVTASSDHTARLW 285 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee-------cC-CceEE--eeeecc-CccEEEecCCCCceeec
Confidence 9999999999999999999999999999987 3333333 44 44566 999999 89999999999999999
Q ss_pred eCCCCc--cccccC
Q 007306 579 EPLESE--VEWGKL 590 (608)
Q Consensus 579 ~~~~~~--~~~~~~ 590 (608)
++..++ ..|...
T Consensus 286 ~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 286 DLSAGKEVRQYQGH 299 (311)
T ss_pred ccccCceeeecCCc
Confidence 999988 455443
No 18
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=259.99 Aligned_cols=279 Identities=14% Similarity=0.174 Sum_probs=230.4
Q ss_pred CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccce
Q 007306 223 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 302 (608)
Q Consensus 223 ~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 302 (608)
-+||+++.|.+||+|... ++.|... ++. ..+.|+.+...||++.||+++. -.|++||+.++...
T Consensus 11 viLvsA~YDhTIRfWqa~----tG~C~rT-iqh--~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQAL----TGICSRT-IQH--PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-------- 74 (311)
T ss_pred eEEEeccCcceeeeeehh----cCeEEEE-Eec--CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--------
Confidence 479999999999999998 4666643 332 4678999999999998888765 67898888776540
Q ss_pred eeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE
Q 007306 303 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 378 (608)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 378 (608)
.+.-++ +|...|.++.|. |+.+++|+ ||+++|||+....+.+.++ |..+|+++..+|+. .|+
T Consensus 75 Pv~t~e-------------~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 75 PVATFE-------------GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI 140 (311)
T ss_pred ceeEEe-------------ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence 011112 799999999999 99999999 9999999999876666665 66999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec-ccceeeeeccCCCCcc
Q 007306 379 FGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETT 456 (608)
Q Consensus 379 ~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~ 456 (608)
+|..+|.|++||+....+...+.. ....|.++...|||++++.+...|+.++|++-+..... ..++. .+..|. +
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~-k~~ah~---~ 216 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH-KFQAHN---G 216 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh-heeccc---c
Confidence 999999999999998866655543 45689999999999999999999999999997743322 22333 355666 7
Q ss_pred ceEEEEEcCCCCEEEE-EeCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeE
Q 007306 457 IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC 534 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~ 534 (608)
-+..+.+|||+++|++ +.|.+++||+.++. +.-..+ .+|...++.++||.||.||++|+.|+.+++|++..++.+.
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l--~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL--TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe--ecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 8999999999999999 69999999999887 333334 3578999999999999999999999999999999999888
Q ss_pred EEe
Q 007306 535 QIN 537 (608)
Q Consensus 535 ~~~ 537 (608)
.+.
T Consensus 295 qy~ 297 (311)
T KOG0315|consen 295 QYQ 297 (311)
T ss_pred ecC
Confidence 776
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-38 Score=283.65 Aligned_cols=271 Identities=20% Similarity=0.283 Sum_probs=241.5
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
.|.|+-..+++++.|++|++||..+ +++.. .|.+ |.+.|..++|+..|++|++++.|-.+++||..+...
T Consensus 115 ~~hp~~~~v~~as~d~tikv~D~~t----g~~e~-~LrG--Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~--- 184 (406)
T KOG0295|consen 115 IFHPSEALVVSASEDATIKVFDTET----GELER-SLRG--HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR--- 184 (406)
T ss_pred eeccCceEEEEecCCceEEEEEccc----hhhhh-hhhc--cccceeEEEEecCccEEEecCCccchhheeHHHHHH---
Confidence 5788888999999999999999984 66643 3644 999999999999999999999999999998755311
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 373 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 373 (608)
+++... +|...|.+++|- |.++++++ |.+|+.|++.+|-++.++.+|..-|..+..+.
T Consensus 185 -----------------c~ks~~--gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 185 -----------------CIKSLI--GHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred -----------------HHHHhc--CcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 222222 799999999999 99999999 99999999999999999999999999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC---------------CCEEEEEcCCCcEEEEECCCCc
Q 007306 374 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---------------LNVLVSSGADAQLCVWDAVGWK 437 (608)
Q Consensus 374 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~s~~~d~~i~vwd~~~~~ 437 (608)
|| .+++++.|.+|++|-+.++++...++.|..+|.|++|-|. +.++.+++.|++|++||+.++
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg- 324 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG- 324 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-
Confidence 99 9999999999999999999999999999999999999763 258999999999999999994
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg 516 (608)
.++. ...+|. ..|..++|+|.|+||+++ .|+++++||++++++..++.. |...++++.|..+..++++|
T Consensus 325 ----~cL~-tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a--h~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 325 ----MCLF-TLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA--HEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred ----eEEE-EEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC--CcceeEEEecCCCCceEEec
Confidence 5666 566888 799999999999999995 889999999999999999874 68999999999999999999
Q ss_pred EcCCeEEEEeC
Q 007306 517 CKSGHVKVFDT 527 (608)
Q Consensus 517 ~~dg~i~iwd~ 527 (608)
+-|.++++|..
T Consensus 395 sVdqt~KvwEc 405 (406)
T KOG0295|consen 395 SVDQTVKVWEC 405 (406)
T ss_pred cccceeeeeec
Confidence 99999999974
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=298.54 Aligned_cols=241 Identities=14% Similarity=0.206 Sum_probs=210.4
Q ss_pred CCCCCeEEEE-Ee-CCEEEEEe-CCcEEEEEcCCCc----eeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC
Q 007306 322 DPKDSISCFA-LR-GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 392 (608)
Q Consensus 322 ~~~~~v~~v~-~s-~~~l~s~~-d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~ 392 (608)
||+..|.++. |+ |-+|++|+ |.++++|.++.+. ++....+|...|.+++++..+ .|++++.|+++++|++.
T Consensus 363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~ 442 (775)
T KOG0319|consen 363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLP 442 (775)
T ss_pred CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCC
Confidence 7999999998 55 77999999 9999999885433 345567999999999998888 99999999999999987
Q ss_pred CCce-----E----EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE
Q 007306 393 TKKT-----K----AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 463 (608)
Q Consensus 393 ~~~~-----~----~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 463 (608)
..+. . .....|...|+|++++|+.+++++||.|++.++|++.. ...+. ++.||. ..|.++.|
T Consensus 443 ~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~-vLsGH~---RGvw~V~F 513 (775)
T KOG0319|consen 443 KSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLG-VLSGHT---RGVWCVSF 513 (775)
T ss_pred CcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC-----ceEEE-EeeCCc---cceEEEEe
Confidence 6221 1 12345999999999999999999999999999999986 23333 788998 79999999
Q ss_pred cCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec
Q 007306 464 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 542 (608)
Q Consensus 464 sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 542 (608)
+|..+.+++ +.|.+|+||.+.++.++++|.+ |...|..+.|-.+|+.|++++.||.|++|++.++++..++..|
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H--- 588 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH--- 588 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc---
Confidence 999999999 6999999999999999999974 7999999999999999999999999999999999999998743
Q ss_pred cCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 543 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 543 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
...+| +++-+| +..+++||+.||.|.+|.=.+.+
T Consensus 589 -----~DrvW--aL~~~~-~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 589 -----NDRVW--ALSVSP-LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred -----cceeE--EEeecC-ccceeEecCCCeEEEEeecCcHH
Confidence 77788 999999 78899999999999999866543
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.9e-38 Score=293.96 Aligned_cols=283 Identities=17% Similarity=0.249 Sum_probs=240.8
Q ss_pred CCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-
Q 007306 256 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s- 333 (608)
+||+..|.++.|.| .+.+|++++.|+.|+||++ |+ .+.++++.. +|..+|.+++|+
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v------------------y~--~~~~lrtf~--gH~k~Vrd~~~s~ 268 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV------------------YD--DRRCLRTFK--GHRKPVRDASFNN 268 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEE------------------ec--Ccceehhhh--cchhhhhhhhccc
Confidence 56999999999999 8999999999999999984 54 355665544 799999999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 334 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
|..+.+++ |+.+++||+++|+++..+.. ...++|+.|+|++ .+++|+.|+.|+.||+++++.++.+..|-+.|..
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILD 347 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheee
Confidence 99999999 99999999999999999863 4467899999999 8999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC--
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-- 486 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~-- 486 (608)
+.|-++|+.+++.+.|+++++|+.+.+-. ++.+...+. ....++..+|++.++++ +.|+.|.+|.+...
T Consensus 348 i~F~~~g~rFissSDdks~riWe~~~~v~-----ik~i~~~~~---hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 348 ITFVDEGRRFISSSDDKSVRIWENRIPVP-----IKNIADPEM---HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR 419 (503)
T ss_pred eEEccCCceEeeeccCccEEEEEcCCCcc-----chhhcchhh---ccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence 99999999999999999999999987432 221111111 34678999999999999 89999999996532
Q ss_pred -ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCE
Q 007306 487 -NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 565 (608)
Q Consensus 487 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 565 (608)
...+.|.++.-.+.-..+.|||||.+|++|+.||.+.+||..+-+++..+.. | +.. |+.+.|+|...+.
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka-------h-~~~--ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA-------H-DQP--CIGVDWHPVEPSK 489 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc-------C-Ccc--eEEEEecCCCcce
Confidence 2233454433367788899999999999999999999999999999988873 3 332 6699999988899
Q ss_pred EEEEeCCCcEEEEe
Q 007306 566 IALGLTNGRVHVIE 579 (608)
Q Consensus 566 las~s~Dg~v~iW~ 579 (608)
+|||+.||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=257.46 Aligned_cols=288 Identities=18% Similarity=0.207 Sum_probs=232.4
Q ss_pred CCCCcEEEEEEeeC-CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 257 SFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~-g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
+|.++|+.++|+|- |..||+||.|+.|+||+...+.. |. + +..+.++|+..|.+++|+
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-------------~~-----c-k~vld~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-------------WT-----C-KTVLDDGHKRSVRSVAWSPH 72 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-------------EE-----E-EEeccccchheeeeeeecCC
Confidence 49999999999998 89999999999999998864221 11 1 222333799999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCC--CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---ceEEEeeCcccc
Q 007306 334 GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR 406 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~ 406 (608)
|++|++++ |.++.||.-.. .+++.++++|...|.|++|+++| +||+++.|++|.||.+..+ ++...++.|...
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 99999999 99999998754 57889999999999999999999 9999999999999998854 567889999999
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECC-CCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECC
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP 484 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~ 484 (608)
|..+.|+|...+|++++.|.+|++|+-. .+. ..+++ .+.+|. +.|.+++|+|.|..|++ +.|++++||-..
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~ddd---W~c~~-tl~g~~---~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDD---WECVQ-TLDGHE---NTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCC---eeEEE-EecCcc---ceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9999999999999999999999999876 322 34455 566777 68999999999999998 588999999865
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC
Q 007306 485 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 564 (608)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 564 (608)
+ .+. ..|...++.+.|. ...|++++.|+.|++|.-..+-....+...... .+.|... +++++|+|...+
T Consensus 226 ~-----~~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~d--VNsV~w~p~~~~ 294 (312)
T KOG0645|consen 226 T-----DLS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVD--VNSVQWNPKVSN 294 (312)
T ss_pred c-----Ccc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccc--cceEEEcCCCCC
Confidence 2 222 2468899999998 558999999999999987753211222111001 1222334 459999995479
Q ss_pred EEEEEeCCCcEEEEeCC
Q 007306 565 RIALGLTNGRVHVIEPL 581 (608)
Q Consensus 565 ~las~s~Dg~v~iW~~~ 581 (608)
.|++|++||.|++|.+.
T Consensus 295 ~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 295 RLASGGDDGIVNFWELE 311 (312)
T ss_pred ceeecCCCceEEEEEec
Confidence 99999999999999874
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=284.85 Aligned_cols=274 Identities=18% Similarity=0.216 Sum_probs=237.4
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.+.|+|+.|++|+..|.+.+|+... -.+.. .+ ..|.++|.++.||++|.++++|..+|.|++|+..-+..
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~----fnFEt-il--QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTS----FNFET-IL--QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCce----eeHHH-Hh--hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 357999999999999999999999752 11111 12 33999999999999999999999999999997643322
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
.. +..+|...|++++|+ +..+++|+ ||+|+|||....+..+.+.+|.-.|.+++|
T Consensus 173 --------------------k~--~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdW 230 (464)
T KOG0284|consen 173 --------------------KI--IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDW 230 (464)
T ss_pred --------------------HH--hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceecc
Confidence 00 111466999999999 88999999 999999999999998999999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
+|.. .|++|+.|..|++||.++|.++.++.+|...|..+.|+|++++|++++.|..++++|+++. +.+. ...+
T Consensus 231 HP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m-----kEl~-~~r~ 304 (464)
T KOG0284|consen 231 HPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM-----KELF-TYRG 304 (464)
T ss_pred CCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh-----HHHH-Hhhc
Confidence 9999 9999999999999999999999999999999999999999999999999999999999962 3444 4567
Q ss_pred CCCCccceEEEEEcCCCCEEEE--EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
|. ..++++.|+|-..-|++ |.||.|..|.+...+++..+.. .|...|++++|+|-|..|++|+.|.++++|.-.
T Consensus 305 Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 305 HK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 87 79999999998665555 5999999999986777777654 589999999999999999999999999999864
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-36 Score=300.75 Aligned_cols=259 Identities=17% Similarity=0.243 Sum_probs=230.4
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee----------ecccceeeEEeeCCCCeeeeccccCCCCCCeE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE----------EENVNMESQLYQPSSKLVMTNDIAADPKDSIS 328 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 328 (608)
...++|..||+|++.||.|-.|..|++|.+...+.... ..+.+....+.|..++...+.+. ||.++|.
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~--GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY--GHSGPVY 455 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee--cCCCcee
Confidence 56899999999999999999999999999986432211 22333334566665555444433 8999999
Q ss_pred EEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcc
Q 007306 329 CFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 404 (608)
Q Consensus 329 ~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 404 (608)
.+.|+ .++|++|+ |+++++|.+.+..++-.+++|..+|+++.|+|-| +||+++.|++.++|......+.+.+.+|.
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 99999 78999999 9999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEEC
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 483 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~ 483 (608)
+.|.|+.|+|+..++++||.|.+|++||+.++ ..++ ++.||. ++|.+++|||+|++|++| .|+.|.+||+
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G-----~~VR-iF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG-----NSVR-IFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCC-----cEEE-EecCCC---CceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 99999999999999999999999999999994 4566 788999 899999999999999995 8999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
.+++.+..+.. |.+.|.++.||.||..|++|+.|++|++||+..-
T Consensus 607 ~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 607 ANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999875 6999999999999999999999999999998653
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.5e-36 Score=270.66 Aligned_cols=289 Identities=17% Similarity=0.198 Sum_probs=247.0
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.||.+.|.|+++.|...++++|+.|++++|||+.++.. ...+. ||...|..+++|
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L---------------------kltlt--Ghi~~vr~vavS~r 204 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL---------------------KLTLT--GHIETVRGVAVSKR 204 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE---------------------EEeec--chhheeeeeeeccc
Confidence 45999999999999999999999999999998877765 11111 799999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
..|+++++ |+.|+.||++..+.++.+.+|-..|.|++.+|.- .|++|+.|.++++||+++...+..+.||..+|.++.
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~ 284 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM 284 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence 77999999 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeee
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~ 491 (608)
+.|-...+++|+.|++|++||++.++ ... ....|. ..+.+++.+|....++++....|+-|++..|..+..
T Consensus 285 ~~~~dpqvit~S~D~tvrlWDl~agk-----t~~-tlt~hk---ksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 285 CQPTDPQVITGSHDSTVRLWDLRAGK-----TMI-TLTHHK---KSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred eecCCCceEEecCCceEEEeeeccCc-----eeE-eeeccc---ceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 99988889999999999999999854 333 344555 689999999999899988778899999999998888
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 571 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 571 (608)
+. +|..-|.+++...|| ++++|+++|.+.+||.++|...+..... ...|.-...--+.+.+|.. .+..|+||..
T Consensus 356 ls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~--vqpGSl~sEagI~as~fDk-tg~rlit~ea 429 (460)
T KOG0285|consen 356 LS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI--VQPGSLESEAGIFASCFDK-TGSRLITGEA 429 (460)
T ss_pred cc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccccc--ccCCccccccceeEEeecc-cCceEEeccC
Confidence 65 468899999988776 7889999999999999998765554211 2223322222234889998 5899999999
Q ss_pred CCcEEEEeCCC
Q 007306 572 NGRVHVIEPLE 582 (608)
Q Consensus 572 Dg~v~iW~~~~ 582 (608)
|.+|++|.-.+
T Consensus 430 dKtIk~~keDe 440 (460)
T KOG0285|consen 430 DKTIKMYKEDE 440 (460)
T ss_pred CcceEEEeccc
Confidence 99999998654
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-36 Score=272.45 Aligned_cols=279 Identities=18% Similarity=0.186 Sum_probs=246.1
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
||..+|+.+-|+|+-..+++++.|++|++||..++++ ... ..||.+.|..++|+ |
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~---------------------e~~--LrGHt~sv~di~~~a~G 162 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL---------------------ERS--LRGHTDSVFDISFDASG 162 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhh---------------------hhh--hhccccceeEEEEecCc
Confidence 4999999999999999999999999999888776654 111 11799999999999 9
Q ss_pred CEEEEEe-CCcEEEEEcCC-CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 335 SHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
+++++++ |-.+++||..+ .++++.+.+|...|.+++|-|.| +|++++.|.+|+.|++.+|-+++++.+|...|..+.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 9999999 87899999987 67888888999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC---------------CCEEEE-EeC
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---------------QIHLLS-IHE 475 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---------------~~~l~~-~~d 475 (608)
.+.||.++++++.|.++++|-+.+.+ +.. ...+|. .+|.+++|-|. +.++.+ +.|
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~~-----~k~-~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATKQ-----CKA-ELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccch-----hhh-hhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 99999999999999999999998843 222 344666 67888888763 246666 589
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEE
Q 007306 476 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 555 (608)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 555 (608)
++|++||+.++.++.++.+ |...|..++|+|.|+||+++.+|+++++||+.+++....+.++ .+. +++
T Consensus 314 ktIk~wdv~tg~cL~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--------~hf--vt~ 381 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--------EHF--VTS 381 (406)
T ss_pred ceEEEEeccCCeEEEEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--------cce--eEE
Confidence 9999999999999999975 7999999999999999999999999999999999999988744 433 559
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 556 IAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 556 v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
+.|+. +..+++||+-|.++++|..
T Consensus 382 lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCC-CCceEEeccccceeeeeec
Confidence 99998 6889999999999999974
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-35 Score=275.71 Aligned_cols=274 Identities=15% Similarity=0.144 Sum_probs=240.7
Q ss_pred CceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 212 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 212 ~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
.....+|+.+|..||+|+.||.++||+..+ ..... | ..|.++|.++.|+.+|+||++++.||++.+||..++
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G----~l~~t--l--~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG----NLIST--L--GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCc----hhhhh--h--hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 344568999999999999999999999873 34443 3 339999999999999999999999999999887666
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 369 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 369 (608)
.. .+... -|..+-..|.|- ...+++++ |+.|+|+.+....++.++.+|.+.|.++
T Consensus 309 ~~---------------------~q~f~--~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 309 TV---------------------KQQFE--FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred eE---------------------EEeee--eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 54 11111 266776788998 88899999 9999999999999999999999999999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCC---------CEEEEEcCCCcEEEEECCCCcee
Q 007306 370 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL---------NVLVSSGADAQLCVWDAVGWKKL 439 (608)
Q Consensus 370 ~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~s~~~d~~i~vwd~~~~~~~ 439 (608)
.|+|.| +|+++++|++++||..........+.+|...|..+.|+|+| ..+++++.|++|++||+..+
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g--- 442 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG--- 442 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---
Confidence 999999 99999999999999999999999999999999999999964 47999999999999999984
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.++. .+..|. .+|.+++|+|+|+++++| .||.|.+|+.++++.++.+.. .+.|..++|+.+|.+|..+-.
T Consensus 443 --v~i~-~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 443 --VPIH-TLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred --ceeE-eeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEec
Confidence 5666 455677 699999999999999995 899999999999999999965 677999999999999999999
Q ss_pred CCeEEEEeCC
Q 007306 519 SGHVKVFDTS 528 (608)
Q Consensus 519 dg~i~iwd~~ 528 (608)
|+.+++.|+.
T Consensus 514 d~~vcvldlr 523 (524)
T KOG0273|consen 514 DGSVCVLDLR 523 (524)
T ss_pred CCCceEEEec
Confidence 9999998875
No 28
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-37 Score=283.21 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=239.2
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
..+|..+.|.|+|+.|++|+..|...+|+..+-.. + .+...|+.+|.++.|+ +.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF----------------E-------tilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF----------------E-------TILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeH----------------H-------HHhhhhcccceeEEEccCCCE
Confidence 56899999999999999999999999997532211 1 1122699999999999 889
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 413 (608)
+++|+ +|.|++|+..-. .++.+. .|...|++++|+|++ .|+++++||+|+|||....+....+.+|.-.|.+++|+
T Consensus 153 miSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH 231 (464)
T KOG0284|consen 153 MISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH 231 (464)
T ss_pred EEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccC
Confidence 99999 999999998744 344444 455899999999999 99999999999999999988888899999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeee
Q 007306 414 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 492 (608)
|....+++|+.|..|++||.++++ ++- ...+|. ..|..+.|+|++.+|++ |.|..++++|+++.+.+.++
T Consensus 232 P~kgLiasgskDnlVKlWDprSg~-----cl~-tlh~HK---ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 232 PTKGLIASGSKDNLVKLWDPRSGS-----CLA-TLHGHK---NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CccceeEEccCCceeEeecCCCcc-----hhh-hhhhcc---ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 999999999999999999999954 444 455677 78999999999999999 69999999999988888888
Q ss_pred cCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC
Q 007306 493 VPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 571 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 571 (608)
.+ |...+++++|+| ...++.+|+.||.|..|.+...+++..+.. +| ...|+ +++|+| =|.+|++|+.
T Consensus 303 r~--Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~------AH-d~~iw--sl~~hP-lGhil~tgsn 370 (464)
T KOG0284|consen 303 RG--HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP------AH-DGEIW--SLAYHP-LGHILATGSN 370 (464)
T ss_pred hc--chhhheeeccccccccceeeccCCCceEEEeccccccccCCCc------cc-cccee--eeeccc-cceeEeecCC
Confidence 75 799999999998 456788999999999999986666655542 44 66677 999999 6999999999
Q ss_pred CCcEEEEeCCC
Q 007306 572 NGRVHVIEPLE 582 (608)
Q Consensus 572 Dg~v~iW~~~~ 582 (608)
|.++++|.-..
T Consensus 371 d~t~rfw~r~r 381 (464)
T KOG0284|consen 371 DRTVRFWTRNR 381 (464)
T ss_pred CcceeeeccCC
Confidence 99999998654
No 29
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-34 Score=262.18 Aligned_cols=319 Identities=14% Similarity=0.196 Sum_probs=259.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
+++.+|+.+.++||+.|....+|+..+ ++ ....+. ||++.|+++.||.||.+||||.-+|.|.||+..++..
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~----ge-~~~elt--gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~- 140 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDIST----GE-FAGELT--GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE- 140 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccC----Cc-ceeEec--CCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-
Confidence 357999999999999999999999985 44 223354 4999999999999999999999999999999887765
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
.|... ..-..+.-+.|+ +..|+.|+ ||.+..|.+.++...+.+.+|..++++=.|
T Consensus 141 -----------~~~~~-----------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f 198 (399)
T KOG0296|consen 141 -----------QWKLD-----------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEF 198 (399)
T ss_pred -----------EEEee-----------cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccc
Confidence 33321 133456667777 88899999 999999999998889999999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc--eeee
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF--LHSF 447 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~~~~ 447 (608)
.|+| .++++..||+|++||+.++.++..+.+ ......++.++.++..++.|+.++.+++-+..+++...... ...+
T Consensus 199 ~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l 278 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL 278 (399)
T ss_pred cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence 9999 999999999999999999999988764 34467788899999999999999999998887765432111 1111
Q ss_pred eccCCCCccceEEEEEcC---CCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 448 QTGLVPETTIVNHIQFHP---DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
...+. ..+.++.+.| .=.+.++| -||+|.|||+.+.++...+ .|...|+.+.|-+ ..+|++++.||.|+
T Consensus 279 ~~~~e---~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c---~he~~V~~l~w~~-t~~l~t~c~~g~v~ 351 (399)
T KOG0296|consen 279 KPSQE---ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC---EHEDGVTKLKWLN-TDYLLTACANGKVR 351 (399)
T ss_pred cccch---hhhhhhhhcccccccchhhcccccceEEEEecccchhheec---cCCCceEEEEEcC-cchheeeccCceEE
Confidence 22233 3444555554 44556664 8999999999887775555 3688899999998 78999999999999
Q ss_pred EEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 524 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 524 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
.||.++|++...+. ||.. .|. +++.+| +.++++|+|.|++.+|+++.
T Consensus 352 ~wDaRtG~l~~~y~-------GH~~-~Il--~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 352 QWDARTGQLKFTYT-------GHQM-GIL--DFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeeccccceEEEEe-------cCch-hee--EEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 99999999999987 6633 355 999999 79999999999999999874
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.6e-36 Score=296.07 Aligned_cols=243 Identities=17% Similarity=0.217 Sum_probs=211.4
Q ss_pred CCCCceeEeecCCCCeEEEeecCCeEEEeeccCCC-----------CC---------------CceeeEeecCCCCCCcE
Q 007306 209 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN-----------EP---------------SECRTLLLPDNSFGGRV 262 (608)
Q Consensus 209 ~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~-----------~~---------------~~~~~~~l~~~~h~~~V 262 (608)
.+....+..|++|++.+|.|-.|..|++|.+...+ .. ......+| .||.++|
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L--~GH~GPV 454 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL--YGHSGPV 454 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe--ecCCCce
Confidence 34444567899999999999999999999987311 00 00011113 4699999
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEE
Q 007306 263 VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 340 (608)
Q Consensus 263 ~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~ 340 (608)
..+.|+|+.++|+++|.|+++++|.+.+..+.. +|. ||..+|+++.|+ |-++||+
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V----------~y~-------------GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV----------IYK-------------GHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEE----------Eec-------------CCCcceeeEEecCCceEEEec
Confidence 999999999999999999999999988776521 222 799999999999 9999999
Q ss_pred e-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE
Q 007306 341 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 418 (608)
Q Consensus 341 ~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 418 (608)
+ |++.++|......+.+.+.+|-..|.|+.|+|+. ++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++
T Consensus 512 s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred CCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 9 9999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCC
Q 007306 419 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 485 (608)
Q Consensus 419 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~ 485 (608)
|++|+.||.|.+||+.+++ .+. .+.+|. +.|.++.|+.+|..|++ |.|++|++||+..
T Consensus 592 LaSg~ed~~I~iWDl~~~~-----~v~-~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDEDGLIKIWDLANGS-----LVK-QLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EeecccCCcEEEEEcCCCc-----chh-hhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999854 333 455776 89999999999999999 6999999999864
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=287.93 Aligned_cols=348 Identities=15% Similarity=0.160 Sum_probs=274.9
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
+...+||++.|++++..+.+++|++..++.....+. .|++||.-++|+|.|..|++|+.||.+++||+..+.+.
T Consensus 67 a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa------~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t 140 (775)
T KOG0319|consen 67 ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKA------IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT 140 (775)
T ss_pred eeeecCCccEEEEeeccceEEEEEcccchHhHhHhh------ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE
Confidence 457999999999999999999999985322222222 29999999999999999999999999999999877654
Q ss_pred ee-----------------------ecccceeeEEeeCCCCee-eeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 007306 295 LE-----------------------EENVNMESQLYQPSSKLV-MTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 347 (608)
Q Consensus 295 ~~-----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~v 347 (608)
.. ....+..+++||..++.. +.... .|.+.|++++|+ +..+++++ |..+.+
T Consensus 141 h~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~--~H~S~vtsL~~~~d~~~~ls~~RDkvi~v 218 (775)
T KOG0319|consen 141 HSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMI--LHKSAVTSLAFSEDSLELLSVGRDKVIIV 218 (775)
T ss_pred EEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHH--hhhhheeeeeeccCCceEEEeccCcEEEE
Confidence 32 233445678999886553 32222 589999999998 55666666 777777
Q ss_pred EEcCC----------------------------------------------Ccee-------------------------
Q 007306 348 FSLET----------------------------------------------FQTL------------------------- 356 (608)
Q Consensus 348 wd~~~----------------------------------------------~~~~------------------------- 356 (608)
||+.+ +++.
T Consensus 219 wd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred eehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 77631 1000
Q ss_pred ------------------------------------------------------------eEecCCCCCeEEEEEcCCC-
Q 007306 357 ------------------------------------------------------------ATFANPPPIATYFILLPQD- 375 (608)
Q Consensus 357 ------------------------------------------------------------~~~~~~~~~v~~~~~~~~~- 375 (608)
+.+.+|...|.+++...+|
T Consensus 299 vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 299 VTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred EEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCc
Confidence 1224666677777766778
Q ss_pred eEEEEeCCCcEEEEeCCCC----ceEEEeeCccccEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceecc---cceeee
Q 007306 376 LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCS---KFLHSF 447 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~ 447 (608)
+|++|+.|+++++|.++++ .++....+|.+.|.+++++..+ .+|+++|.|+++++|++...+.... ...+..
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 9999999999999977443 3445667899999999997744 6799999999999999987322211 111113
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
...|. ..|++++++|+.+.+++ |.|.+.+||+++......++.+ |...|+++.|+|..+.++++|.|++|+||.
T Consensus 459 ~~aHd---KdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 459 ERAHD---KDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred HHhhc---ccccceEecCCCceEEecccccceeeecccCceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEE
Confidence 34566 68999999999999999 5999999999998888888874 799999999999999999999999999999
Q ss_pred CCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 527 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
+.+..+++++. ||... |..+.|-. ++..|+||+.||-+++|+++++++.
T Consensus 534 is~fSClkT~e-------GH~~a---Vlra~F~~-~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 534 ISTFSCLKTFE-------GHTSA---VLRASFIR-NGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred eccceeeeeec-------Cccce---eEeeeeee-CCcEEEeccCCCcEEEEeccchhhh
Confidence 99999999997 66444 55899998 7999999999999999999998874
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=295.25 Aligned_cols=288 Identities=25% Similarity=0.321 Sum_probs=244.0
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|...|.++.|+|+|+++++++.|+.+++|+...... ...... .+|...|.+++|+ ++
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------------------~~~~~l--~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------------------NLLREL--SGHTRGVSDVAFSPDGS 216 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------------------hhhccc--cccccceeeeEECCCCc
Confidence 478999999999999999999999999998744330 011111 2799999999999 77
Q ss_pred EEEEEe-CCcEEEEEc-CCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEE
Q 007306 336 HLFSAS-GGKISIFSL-ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 412 (608)
++++++ |++|++||+ ..+..++++++|...|++++|+|++ .+++|+.|++|++||+++++++..+.+|...|++++|
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 999999 999999999 6668999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeee
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~ 491 (608)
++++++|++++.|+.|++||+.++... ++. ...++.... +++++.|+|++++++++ .|+.+++||+..+..+..
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~-~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKL---CLK-LLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCcee---eee-cccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 999999999999999999999996532 233 333444211 68999999999999995 778999999999999988
Q ss_pred ecCCCCC-CCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 492 LVPDKMD-LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 492 ~~~~~~~-~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
+..+... ..+.+...++.+.++++|+.|+.|++|++.++..+..+. ||.... +..++|+| ..+++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~--~~~~~~~~-~~~~~~s~s 441 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAA--VSDLSSHP-TENLIASSS 441 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCc--eeccccCC-CcCeeeecC
Confidence 8764222 245566667899999999999999999999988888876 442222 44899999 789999998
Q ss_pred --CCCcEEEEeCC
Q 007306 571 --TNGRVHVIEPL 581 (608)
Q Consensus 571 --~Dg~v~iW~~~ 581 (608)
.|+.+++|...
T Consensus 442 ~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLIRLWKYD 454 (456)
T ss_pred cCCCceEEEecCC
Confidence 79999999864
No 33
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=245.39 Aligned_cols=277 Identities=12% Similarity=0.103 Sum_probs=232.9
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
.|+++|..+.|+-||+|.++++.|.+|++|+...+ .+++... +|...|..++.+ +
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---------------------~liktYs--ghG~EVlD~~~s~Dn 71 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---------------------ALIKTYS--GHGHEVLDAALSSDN 71 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccc---------------------ceeeeec--CCCceeeeccccccc
Confidence 38999999999999999999999999997765444 4444333 799999999988 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEEeeCccccEEEE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCL 410 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~ 410 (608)
..+++|+ |..+.+||+++|+.++.+++|.+.|+.+.|+.+. .+++|+.|.++++||.++. ++++.+......|.++
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI 151 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE
Confidence 7899998 9999999999999999999999999999999999 9999999999999999875 6788888888889998
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCcee
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 489 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~ 489 (608)
..+ +..+++|+.||+++.||++.+.... -.-+ .+|++++|++|++..++ +-|+++++.|-.+|+.+
T Consensus 152 ~v~--~heIvaGS~DGtvRtydiR~G~l~s------Dy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 152 DVA--EHEIVAGSVDGTVRTYDIRKGTLSS------DYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred Eec--ccEEEeeccCCcEEEEEeecceeeh------hhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHH
Confidence 886 5679999999999999999854221 1122 57999999999999888 58999999999999999
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
..+.++.....-..++++.....+++|++||.|++||+.....+..+.. .+.+.+++++++|. ..-|+++
T Consensus 219 ~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~---------~~~v~v~dl~~hp~-~~~f~~A 288 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV---------VSTVIVTDLSCHPT-MDDFITA 288 (307)
T ss_pred HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc---------CCceeEEeeecccC-ccceeEe
Confidence 9998765566667788888889999999999999999999988887753 23355679999995 5556665
Q ss_pred eCCCcEEEEeC
Q 007306 570 LTNGRVHVIEP 580 (608)
Q Consensus 570 s~Dg~v~iW~~ 580 (608)
. ++.+..|.-
T Consensus 289 ~-~~~~~~~~~ 298 (307)
T KOG0316|consen 289 T-GHGDLFWYQ 298 (307)
T ss_pred c-CCceeceee
Confidence 4 345666653
No 34
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=243.89 Aligned_cols=273 Identities=15% Similarity=0.218 Sum_probs=224.0
Q ss_pred EeecCC-CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 216 STSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 216 ~~~s~d-g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
++++|- |..||+++.|..|++|+... ...-.|+.. |. .+|+..|++++|+|.|++|+++|.|.++.||.-..++.
T Consensus 20 ~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~v-ld-~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef- 95 (312)
T KOG0645|consen 20 VAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTV-LD-DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF- 95 (312)
T ss_pred EEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEe-cc-ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce-
Confidence 479998 89999999999999999975 223445543 43 47999999999999999999999999999987554432
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC---CceeeEecCCCCCeEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET---FQTLATFANPPPIATY 368 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~---~~~~~~~~~~~~~v~~ 368 (608)
+++. ..+||...|.|++|+ |++||+|+ |..|-||.+.. .++...+++|...|..
T Consensus 96 ------------------ecv~--~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 96 ------------------ECVA--TLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ------------------eEEe--eeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 1222 233899999999999 99999999 99999999974 4677889999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCC-C--CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccce
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPC-T--KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 444 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 444 (608)
+.|+|.. +|++++.|.+|++|+-. . -.+.+++.+|.+.|.+++|+|.|..|++++.|+++++|...+.
T Consensus 156 V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------- 227 (312)
T KOG0645|consen 156 VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------- 227 (312)
T ss_pred EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------
Confidence 9999999 99999999999999866 2 3678999999999999999999999999999999999986641
Q ss_pred eeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC------ceeeeecCCCCCCCeEEEEEecC-CCEEEEE
Q 007306 445 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCD-GKCIYVS 516 (608)
Q Consensus 445 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~-~~~l~sg 516 (608)
+..-|. ..+..+.|. + ..|++ |.|+.|++|.-... +.+... ...|...|.++.|.|. ...|++|
T Consensus 228 --~~~~~s---r~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 228 --LSGMHS---RALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred --cchhcc---cceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCceeec
Confidence 223344 578899998 4 46676 69999999986532 122212 2347889999999995 6889999
Q ss_pred EcCCeEEEEeCC
Q 007306 517 CKSGHVKVFDTS 528 (608)
Q Consensus 517 ~~dg~i~iwd~~ 528 (608)
+.||.|++|.+.
T Consensus 300 ~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 300 GDDGIVNFWELE 311 (312)
T ss_pred CCCceEEEEEec
Confidence 999999999875
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.5e-33 Score=308.03 Aligned_cols=319 Identities=13% Similarity=0.153 Sum_probs=242.5
Q ss_pred CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCC
Q 007306 231 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 310 (608)
Q Consensus 231 d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 310 (608)
+|.+++|+............-.+ ..|.+.|++++|+|+|+++|+|+.|+.|+||+......... +..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~--~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------~~~ 523 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDL--LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------DIH 523 (793)
T ss_pred hhhhhhhcccceEEEEeeccccc--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------ccc
Confidence 67788888764211111110011 23899999999999999999999999999999754211000 000
Q ss_pred CCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC-CC-eEEEEeCCC
Q 007306 311 SKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDS 384 (608)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~ 384 (608)
.. ... . .+...|.+++|+ +.+|++++ ||+|++||+.+++.+..+.+|...|++++|+| ++ +|++|+.|+
T Consensus 524 ~~-~~~--~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg 598 (793)
T PLN00181 524 YP-VVE--L--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG 598 (793)
T ss_pred cc-eEE--e--cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC
Confidence 00 000 1 245678999998 67899999 99999999999999999999999999999997 66 999999999
Q ss_pred cEEEEeCCCCceEEEeeCccccEEEEEEe-CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE
Q 007306 385 SILVHCPCTKKTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 463 (608)
Q Consensus 385 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 463 (608)
.|++||++++..+..+..+ ..|.++.|+ ++|.++++|+.||.|++||+++.. .++. ...+|. ..|.++.|
T Consensus 599 ~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~----~~~~-~~~~h~---~~V~~v~f 669 (793)
T PLN00181 599 SVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK----LPLC-TMIGHS---KTVSYVRF 669 (793)
T ss_pred EEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC----ccce-EecCCC---CCEEEEEE
Confidence 9999999999988888754 679999995 479999999999999999998742 2233 345777 68999999
Q ss_pred cCCCCEEEE-EeCCcEEEEECCCC------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 464 HPDQIHLLS-IHEGQIDVYEAPTL------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 464 sp~~~~l~~-~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
. ++.++++ +.|+.|++||+..+ .++..+. +|...+..++|+|++.+|++|+.|+.|++|+......+..+
T Consensus 670 ~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 670 V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEE
Confidence 7 5677777 68999999999743 4566665 46888999999999999999999999999998877655443
Q ss_pred eceee-ccCC--CcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 537 NLTAY-AQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 537 ~~~~~-~~~g--~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
..... ...| ...+...+.+++|+| ++.+|++|+.||.|+||++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 21100 0001 011222355999999 7999999999999999986
No 36
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=8.8e-34 Score=251.21 Aligned_cols=301 Identities=14% Similarity=0.157 Sum_probs=239.3
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCC-eeeeccccCCCCCCeEEEEEe--C
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
|++++.+.+|||||.++|+|+.|..|+|.|++.---.-. ......-+...+ -+++++. .|...|+++.|+ .
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~----~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre 184 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK----PKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRE 184 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc----hhhhccCCcccCCceEeehh--hccCcccceeecchh
Confidence 999999999999999999999999999999862211000 000000011111 1333333 599999999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe---eCccccE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRI 407 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~v 407 (608)
..|++++ |++|+++|+......+.++ ....+|.++.|+|.| ++++|....++++||+.+-++...- ..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 8999999 9999999997644333333 345689999999999 9999999999999999998776433 3589999
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC
Q 007306 408 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 486 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~ 486 (608)
+++.+++.|++.++++.||.|++||--+ .+++.++...|.. ..|.+..|..+|+++++ |.|..+++|.+.++
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS-----~rCv~t~~~AH~g--sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVS-----NRCVRTIGNAHGG--SEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeecccc-----HHHHHHHHhhcCC--ceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 9999999999999999999999999776 5788878888876 78999999999999999 69999999999999
Q ss_pred ceeeeecCCCC---CCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 487 NHTSQLVPDKM---DLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 487 ~~~~~~~~~~~---~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
+++.++.+.+. ...-+...|+....|++.-.+ .+.+.-||.+++.....+.. || .+.++ .+..|| .
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl------gH-n~a~R--~i~HSP-~ 407 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL------GH-NGAVR--WIVHSP-V 407 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc------CC-CCCce--EEEeCC-C
Confidence 99999987633 233455678888888887654 47899999999887766543 77 44455 899999 6
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 007306 563 PNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~ 581 (608)
+.-+++||+|-..|+|--.
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 8899999999999999754
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.9e-32 Score=266.97 Aligned_cols=278 Identities=23% Similarity=0.329 Sum_probs=238.7
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
+|.++|.+++|+|++++|++++.||.+.+|+..++... ... ..|...+..+.|+ +
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~---------------------~~~--~~~~~~i~~~~~~~~~ 63 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---------------------RTL--KGHTGPVRDVAASADG 63 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE---------------------EEE--ecCCcceeEEEECCCC
Confidence 49999999999999999999999999999988665420 000 1588888899999 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 412 (608)
+.+++++ +|.|++||+.+++....+..|...+.++.|++++ .+++++.++.|.+||+.+++....+..|...+.++.|
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 6899999 9999999999988888999999999999999999 8888888999999999999988888889999999999
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeee
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~ 491 (608)
+|++.++++++.|+.|++||+++++ .+. ....|. ..+.++.|+|+++.+++ +.++.|++||+.+++.+..
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~-~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGK-----CVA-TLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEccccc-----cce-eEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 9999999988889999999998643 333 333554 58999999999988887 4799999999998888877
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 571 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 571 (608)
+.. |...+.+++|+|++.++++++.||.|++|++.+++....+. +| ... +.+++|+| ++.+|++++.
T Consensus 215 ~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-------~~-~~~--i~~~~~~~-~~~~l~~~~~ 281 (289)
T cd00200 215 LRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-------GH-TNS--VTSLAWSP-DGKRLASGSA 281 (289)
T ss_pred hhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-------cc-CCc--EEEEEECC-CCCEEEEecC
Confidence 753 57799999999999999999889999999999988777765 22 333 44999999 7899999999
Q ss_pred CCcEEEEe
Q 007306 572 NGRVHVIE 579 (608)
Q Consensus 572 Dg~v~iW~ 579 (608)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999996
No 38
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-34 Score=247.90 Aligned_cols=290 Identities=15% Similarity=0.164 Sum_probs=245.2
Q ss_pred CCCCCcEEEEEEee---CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE
Q 007306 256 NSFGGRVVRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 332 (608)
Q Consensus 256 ~~h~~~V~~~~fsp---~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 332 (608)
+||+.+|..++||| +|-+|++++.||.-.+-+- ++|.-+.+.. +|++.|+....
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g---------------------~tgdwigtfe--ghkgavw~~~l 67 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG---------------------DTGDWIGTFE--GHKGAVWSATL 67 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccC---------------------CCCCcEEeee--ccCcceeeeec
Confidence 67999999999996 8889999999987665433 3444333222 89999999998
Q ss_pred e-C-CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccE
Q 007306 333 R-G-SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRI 407 (608)
Q Consensus 333 s-~-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v 407 (608)
. + ..-++++ |-+-++||.-+|..+.++. |..-|.+++|+.|. .|++|+.++.++|||++.. .+...+.+|.+.|
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~I 146 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGI 146 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcc
Confidence 8 3 4566777 9999999999999999885 78889999999999 9999999999999999865 3557788999999
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCc
Q 007306 408 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN 487 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~ 487 (608)
..+.|....+.+++.+.|++|++||.+++... +++... .+|+++.++++|++|.++..+.|.+||..+..
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v-----~sL~~~-----s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEV-----QSLEFN-----SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEE-----EEEecC-----CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 99999998899999999999999999996543 323322 57999999999999999999999999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 567 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 567 (608)
+++.+.. ...|.+..++|+...+++|++|+.++.||..+|+.+..+. .||.+ +|. |+.|+| ||...|
T Consensus 217 ~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n------kgh~g-pVh--cVrFSP-dGE~yA 283 (334)
T KOG0278|consen 217 LLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN------KGHFG-PVH--CVRFSP-DGELYA 283 (334)
T ss_pred ceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc------cCCCC-ceE--EEEECC-CCceee
Confidence 9988865 6779999999999999999999999999999999888752 26644 355 999999 899999
Q ss_pred EEeCCCcEEEEeCCCCcc--ccccCCC
Q 007306 568 LGLTNGRVHVIEPLESEV--EWGKLPF 592 (608)
Q Consensus 568 s~s~Dg~v~iW~~~~~~~--~~~~~~~ 592 (608)
+||.||+|++|....++. .|....|
T Consensus 284 sGSEDGTirlWQt~~~~~~~~~~~~~~ 310 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGKTYGLWKCVKP 310 (334)
T ss_pred ccCCCceEEEEEecCCCchhhccccCh
Confidence 999999999999987664 5655544
No 39
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=270.62 Aligned_cols=338 Identities=14% Similarity=0.176 Sum_probs=268.3
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
..|...|..|++||.|+.|.+||+- ++--.++|.+ |.+.|+.+-|..+.+++++.|.|+.|++||+.+..+..
T Consensus 113 l~fd~~G~rlaSGskDt~IIvwDlV-----~E~Gl~rL~G--Hkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~ 185 (888)
T KOG0306|consen 113 LKFDKIGTRLASGSKDTDIIVWDLV-----GEEGLFRLRG--HKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFE 185 (888)
T ss_pred EEEcccCceEeecCCCccEEEEEec-----cceeeEEeec--chHHHhHHhccCCCeEEEEeccCceEEEEecccceeee
Confidence 4799999999999999999999996 4445555744 99999999999989999999999999999997765431
Q ss_pred ee-------------------c---------cc--------------------------ceee-----------------
Q 007306 296 EE-------------------E---------NV--------------------------NMES----------------- 304 (608)
Q Consensus 296 ~~-------------------~---------~~--------------------------~~~~----------------- 304 (608)
.+ . .. ...+
T Consensus 186 Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d 265 (888)
T KOG0306|consen 186 THVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGAD 265 (888)
T ss_pred EEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecch
Confidence 10 0 00 0000
Q ss_pred --------------------------------------------------------------------------------
Q 007306 305 -------------------------------------------------------------------------------- 304 (608)
Q Consensus 305 -------------------------------------------------------------------------------- 304 (608)
T Consensus 266 ~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNt 345 (888)
T KOG0306|consen 266 KVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNT 345 (888)
T ss_pred hhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCc
Confidence
Q ss_pred -EEeeCCC-Cee------eeccccCCCCCCeEEEEEe-CC-EEEEEeCCcEEEEEcCCCceeeEe---------------
Q 007306 305 -QLYQPSS-KLV------MTNDIAADPKDSISCFALR-GS-HLFSASGGKISIFSLETFQTLATF--------------- 359 (608)
Q Consensus 305 -~~~~~~~-~~~------~~~~~~~~~~~~v~~v~~s-~~-~l~s~~d~~i~vwd~~~~~~~~~~--------------- 359 (608)
..|.... +.. ....-..||...|.+++++ ++ .+++|+.+.+++|+..+.++++++
T Consensus 346 v~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~ 425 (888)
T KOG0306|consen 346 VEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDR 425 (888)
T ss_pred eEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCc
Confidence 0111000 000 0112233799999999999 44 555566899999999987776544
Q ss_pred -------------------------cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-----CceEEEee-------
Q 007306 360 -------------------------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-----KKTKAKLK------- 401 (608)
Q Consensus 360 -------------------------~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~-----~~~~~~~~------- 401 (608)
+.|.+.+++++.+||+ .+++|+.|.+|++||..- |...+.+.
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence 4688899999999999 999999999999999641 22111111
Q ss_pred CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEE
Q 007306 402 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV 480 (608)
Q Consensus 402 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~i 480 (608)
.-...|.|+.+||||++|+++--|.++++|-+++. .+.-..-||. -+|.|+.++||++.+++ |.|..|++
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------KFflsLYGHk---LPV~smDIS~DSklivTgSADKnVKi 576 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------KFFLSLYGHK---LPVLSMDISPDSKLIVTGSADKNVKI 576 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------eeeeeecccc---cceeEEeccCCcCeEEeccCCCceEE
Confidence 13567999999999999999999999999999983 2222355888 69999999999999999 59999999
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec
Q 007306 481 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
|-+.-|.|.+.+.. |...|.++.|-|...++++++.|+.|+-||-...+.+..+. || ...+| +++.+|
T Consensus 577 WGLdFGDCHKS~fA--HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H-~~ev~--cLav~~ 644 (888)
T KOG0306|consen 577 WGLDFGDCHKSFFA--HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GH-HSEVW--CLAVSP 644 (888)
T ss_pred eccccchhhhhhhc--ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cc-hheee--eeEEcC
Confidence 99999999999875 69999999999999999999999999999999999999887 55 44577 999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC
Q 007306 561 LEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~~ 582 (608)
+|.+++|+|.|.+|++|....
T Consensus 645 -~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 645 -NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -CCCeEEeccCCceeEeeeccC
Confidence 899999999999999999765
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=239.94 Aligned_cols=242 Identities=16% Similarity=0.233 Sum_probs=215.7
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
++.++|.++.|+ |+|.++|+ |.+|++|+...|.+++++.+|...|..++.+.|+ .|++|+.|+.+.+||+.+|+.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee
Confidence 689999999999 99999999 9999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCC
Q 007306 398 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG 476 (608)
Q Consensus 398 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~ 476 (608)
+.|++|.+.|+.+.|+.+...+++|+.|.++++||.++.. ..+++ ++.... ..|.++..+ +..|++ +.||
T Consensus 95 Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s---~ePiQ-ildea~---D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 95 RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS---FEPIQ-ILDEAK---DGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC---CCccc-hhhhhc---CceeEEEec--ccEEEeeccCC
Confidence 9999999999999999999999999999999999999854 45666 333333 578888887 456666 5999
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEE
Q 007306 477 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 477 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
+++.||++.|+....+. ..+|++++|++|++..+.++.|+++++.|-.+|+++..+. || ...-|-+.+
T Consensus 166 tvRtydiR~G~l~sDy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-------Gh-kn~eykldc 233 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-------GH-KNMEYKLDC 233 (307)
T ss_pred cEEEEEeecceeehhhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-------cc-ccceeeeee
Confidence 99999999999876664 6789999999999999999999999999999999999887 55 334555677
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 557 AAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 557 ~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
+++. ....+++||.||.|++||+.++..
T Consensus 234 ~l~q-sdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 234 CLNQ-SDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred eecc-cceeEEeccCCceEEEEEecccee
Confidence 8887 468999999999999999988654
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.1e-33 Score=244.51 Aligned_cols=279 Identities=15% Similarity=0.178 Sum_probs=231.0
Q ss_pred ceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeE-eecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 213 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~-~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
...+.|+|+|.++|+|+.|..|.+|++.+ .|..+ ++ .||.+.|..+.|.+|++.++++|.|.+++.||.+++
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-----dceN~~~l--kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYG-----DCENFWVL--KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEeccc-----cccceeee--ccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence 34468999999999999999999999863 33322 23 359999999999999999999999999999988777
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIAT 367 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~ 367 (608)
+... . ..+|..-|+++.-+ |. ++.+++ |+++++||+.+...++++. ....++
T Consensus 123 ~~~r------------k-----------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 123 KRIR------------K-----------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred eeee------------h-----------hccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 6511 1 11688999999877 54 566677 8999999999888887774 345788
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee
Q 007306 368 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 446 (608)
++.|..++ .+.+|+-|+.|++||++.+.....+.||.+.|+.+..+|+|.++.+-+.|.++++||++-.-.. .+++.
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~-~R~v~- 256 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS-QRCVK- 256 (338)
T ss_pred EEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC-CceEE-
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999863221 23455
Q ss_pred eeccCCCC-ccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 007306 447 FQTGLVPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 524 (608)
Q Consensus 447 ~~~~~~~~-~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i 524 (608)
++.+|.-. .......+|+|+++.+.+ +.|..+++||......+..+. +|.+.|.+++|+|...+|.+++.|.+|++
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 55554310 023446789999999998 599999999998777777664 57999999999999999999999999987
Q ss_pred Ee
Q 007306 525 FD 526 (608)
Q Consensus 525 wd 526 (608)
=.
T Consensus 335 ge 336 (338)
T KOG0265|consen 335 GE 336 (338)
T ss_pred ec
Confidence 43
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-32 Score=266.65 Aligned_cols=339 Identities=15% Similarity=0.145 Sum_probs=269.3
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
.-+||...||.|-.||.|+||+... . ...+++ .||...|+++.|+..|.+|++||.|+.|.+||+-...-...
T Consensus 72 ~~~~d~l~lAVGYaDGsVqif~~~s----~-~~~~tf--ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 72 RSSDDILLLAVGYADGSVQIFSLES----E-EILITF--NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred eccCCcceEEEEecCceEEeeccCC----C-ceeeee--cccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 4568888999999999999999974 2 233335 45999999999999999999999999999999954433222
Q ss_pred ---------------------ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcC---
Q 007306 297 ---------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE--- 351 (608)
Q Consensus 297 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~--- 351 (608)
..+-+..+++||.++..|..+.. .|.+.|+++++.++.+++++ |+.+++|++.
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv--d~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV--DHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe--cccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 12334457999999999887666 69999999999977777766 9999999981
Q ss_pred --------------------------------------------------------------------------------
Q 007306 352 -------------------------------------------------------------------------------- 351 (608)
Q Consensus 352 -------------------------------------------------------------------------------- 351 (608)
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence
Q ss_pred ---------------------------------------------------CCc--------eeeEecCCCCCeEEEEEc
Q 007306 352 ---------------------------------------------------TFQ--------TLATFANPPPIATYFILL 372 (608)
Q Consensus 352 ---------------------------------------------------~~~--------~~~~~~~~~~~v~~~~~~ 372 (608)
++. .--.+.+|...|.+++++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 000 255667888889888888
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEE----------------------------------------eeCccccEEEEE
Q 007306 373 PQD-LFAFGFDDSSILVHCPCTKKTKAK----------------------------------------LKGHQNRITCLA 411 (608)
Q Consensus 373 ~~~-~l~~~~~d~~i~vwd~~~~~~~~~----------------------------------------~~~~~~~v~~~~ 411 (608)
.+. .+++|+ .+++++|+..+.+++++ .++|.+.|.+++
T Consensus 383 ~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 383 SDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS 461 (888)
T ss_pred cCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee
Confidence 888 555554 66888888887766543 246889999999
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCcee--cc-ccee----eeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEEC
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKL--CS-KFLH----SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 483 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~--~~-~~~~----~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~ 483 (608)
.+||++.+++|+.|.+|++||..--... .. +.+. +..+- . ..|.++.+||||++|+++ -|++++||-+
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~---ddvL~v~~Spdgk~LaVsLLdnTVkVyfl 537 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-E---DDVLCVSVSPDGKLLAVSLLDNTVKVYFL 537 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-c---ccEEEEEEcCCCcEEEEEeccCeEEEEEe
Confidence 9999999999999999999997531110 00 0010 01111 1 579999999999999998 8999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
++.+..-++. +|.-||.++.+|||++.+++||.|..|+||-++-|.+...+. +| +.. +.++.|-| +.
T Consensus 538 DtlKFflsLY--GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-------AH-dDS--vm~V~F~P-~~ 604 (888)
T KOG0306|consen 538 DTLKFFLSLY--GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-------AH-DDS--VMSVQFLP-KT 604 (888)
T ss_pred cceeeeeeec--ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-------cc-cCc--eeEEEEcc-cc
Confidence 9998877776 479999999999999999999999999999999999888876 44 333 45999999 78
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 007306 564 NRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~ 582 (608)
.++.|||.|+.|+-||-..
T Consensus 605 ~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred eeEEEecCcceEEeechhh
Confidence 8999999999999998654
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=280.38 Aligned_cols=279 Identities=18% Similarity=0.194 Sum_probs=233.7
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
...|+|||+++++++.|+.+++|+...... .... .+ .+|...|.+++|+|+|+++++++.|++++|||+....
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~--~l--~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-- 236 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLR--EL--SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-- 236 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccc-hhhc--cc--cccccceeeeEECCCCcEEEEecCCceEEEeeccCCC--
Confidence 358999999999999999999999964321 1122 23 4599999999999999999999999999999873331
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
.+++.+. +|...|++++|+ ++.+++|+ |++|++||+.++++...+.+|...|++++|
T Consensus 237 ------------------~~~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 237 ------------------RNLKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred ------------------eEEEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 2222222 799999999999 88999999 999999999999999999999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCc--eEEEeeCcccc--EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNR--ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 446 (608)
++++ .|++++.|+.|++||+.++. +...+.++... ++++.|+|++.++++++.|+.+++||+..+. ...
T Consensus 297 ~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-----~~~- 370 (456)
T KOG0266|consen 297 SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-----SVG- 370 (456)
T ss_pred CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-----cee-
Confidence 9999 99999999999999999998 56777776555 9999999999999999999999999999843 333
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCC-CCCeEEEEEecCCCEEEEEE--cCCeE
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-DLPITYATYSCDGKCIYVSC--KSGHV 522 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~sg~--~dg~i 522 (608)
...+|......+.+...++.++++++| .|+.|++||..++..+..+.. | ...+..+.++|...++++++ .|+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~--h~~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 371 TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEG--HSKAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcC--CCCCceeccccCCCcCeeeecCcCCCceE
Confidence 333444100134555668899999995 899999999999888888765 5 88899999999999999998 68999
Q ss_pred EEEeCC
Q 007306 523 KVFDTS 528 (608)
Q Consensus 523 ~iwd~~ 528 (608)
++|...
T Consensus 449 ~~w~~~ 454 (456)
T KOG0266|consen 449 RLWKYD 454 (456)
T ss_pred EEecCC
Confidence 999764
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-32 Score=264.68 Aligned_cols=281 Identities=17% Similarity=0.247 Sum_probs=242.8
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.++|.++.|+|...+++++-.+|.+.||+.++..... -++ -..-+|.+..|- .+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk----------sfe-------------V~~~PvRa~kfiaRkn 68 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK----------SFE-------------VSEVPVRAAKFIARKN 68 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeee----------eee-------------ecccchhhheeeeccc
Confidence 78999999999999999999999999999987776521 111 245678888888 78
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~ 412 (608)
++++|+ |..|+||+.++++.+..|..|..-|.|++.+|.. +++++++|-+|++||-+.+ .+.++|.||...|.+++|
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 999999 8999999999999999999999999999999999 9999999999999998875 677899999999999999
Q ss_pred eC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC--CEEEEE-eCCcEEEEECCCCce
Q 007306 413 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI-HEGQIDVYEAPTLNH 488 (608)
Q Consensus 413 ~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~-~d~~i~iwd~~~~~~ 488 (608)
+| |.+.+++++-|++|++|.+.+ ..+.. ++.+|. ..|+++.+-+.| .+|++| .|..|+|||..+..|
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs-----~~~nf-Tl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGS-----PHPNF-TLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCC-----CCCce-eeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 99 678899999999999999987 34444 456888 799999998765 688885 788999999999999
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
++++.+ |...|..+.|+|.-..+++|++||+++||+..+.++..++... ...+| +++..+ +.+.++.
T Consensus 220 V~TLeG--Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--------leRvW--~I~~~k-~~~~i~v 286 (794)
T KOG0276|consen 220 VQTLEG--HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--------LERVW--CIAAHK-GDGKIAV 286 (794)
T ss_pred HHHhhc--ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--------CceEE--EEeecC-CCCeEEE
Confidence 999975 7999999999999999999999999999999999888877642 55677 888888 5677888
Q ss_pred EeCCCcEEEEeCCCCc
Q 007306 569 GLTNGRVHVIEPLESE 584 (608)
Q Consensus 569 ~s~Dg~v~iW~~~~~~ 584 (608)
|.+.|.|.+ ++-.++
T Consensus 287 G~Deg~i~v-~lgree 301 (794)
T KOG0276|consen 287 GFDEGSVTV-KLGREE 301 (794)
T ss_pred eccCCcEEE-EccCCC
Confidence 888776654 443333
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-32 Score=246.09 Aligned_cols=274 Identities=15% Similarity=0.193 Sum_probs=236.3
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+++-|...++++|+.|++|+|||+. ++++.. +|. ||...|..+++|+-..||++++.|+.|+.||++.++.
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDla----tg~Lkl-tlt--Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv-- 227 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLA----TGQLKL-TLT--GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV-- 227 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcc----cCeEEE-eec--chhheeeeeeecccCceEEEecCCCeeEEEechhhhh--
Confidence 4789999999999999999999998 455553 464 4999999999999999999999999999998877664
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEc
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 372 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 372 (608)
++... ||-+.|.|++.. ...|++|+ |.+++|||+.+...+..+.+|..+|..+.+.
T Consensus 228 -------------------IR~Yh--GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 228 -------------------IRHYH--GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred -------------------HHHhc--cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee
Confidence 22111 799999999999 88999999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC
Q 007306 373 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 373 ~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
|.+ .+++|+.|++|++||++.|+...++..|...|.+++.+|....+++++.| .|+-|++..+. .++ ...+|
T Consensus 287 ~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~-----f~~-nlsgh 359 (460)
T KOG0285|consen 287 PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE-----FLQ-NLSGH 359 (460)
T ss_pred cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc-----hhh-ccccc
Confidence 988 99999999999999999999999999999999999999999999998876 68999998743 334 36677
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecC---CC---CCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 452 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP---DK---MDLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~---~~---~~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
. ..|++++...||-++..+.+|.+..||.++|...+.... ++ ....|++.+|...|..|++|..|.+|++|
T Consensus 360 ~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 360 N---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred c---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 7 789999999988655557889999999999876655421 11 25678999999999999999999999999
Q ss_pred eCCC
Q 007306 526 DTST 529 (608)
Q Consensus 526 d~~~ 529 (608)
.-..
T Consensus 437 keDe 440 (460)
T KOG0285|consen 437 KEDE 440 (460)
T ss_pred eccc
Confidence 8654
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9e-32 Score=243.99 Aligned_cols=286 Identities=14% Similarity=0.152 Sum_probs=240.6
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|++.|.+++.+|+.++++||+.|....+|+..++.. ++. + .+|+..|.++.|+ |.
T Consensus 63 H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~------------~~e----------l-tgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF------------AGE----------L-TGHKDSVTCCSFSHDGT 119 (399)
T ss_pred cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc------------eeE----------e-cCCCCceEEEEEccCce
Confidence 999999999999999999999999999888877764 111 1 1799999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 413 (608)
+||+|+ +|.|+||+..++.....+...-..+.=+.|+|.+ .|++|+.||.+.+|.+.++...+.+.||+.++++=.|.
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 999999 9999999999999999888777778889999999 99999999999999999988889999999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeee
Q 007306 414 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 492 (608)
|+|+.++++..||+|++||..+++ ++..+..... ....++.++..+..++.| .++.+++-+..+|+.+...
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~-----p~~~~~~~e~---~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~ 271 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQ-----PLHKITQAEG---LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN 271 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCc-----eeEEeccccc---CcCCccccccccceeEeccCCccEEEEccccceEEEec
Confidence 999999999999999999999964 3332222222 467788999999888885 8899999998888887766
Q ss_pred cCC------CC---CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 493 VPD------KM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 493 ~~~------~~---~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
... .+ ...|-++.++..-.+.|+|+-||+|.|||+.+.++..... |..+ |+.+.|-+ .
T Consensus 272 n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--------he~~---V~~l~w~~--t 338 (399)
T KOG0296|consen 272 NGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--------HEDG---VTKLKWLN--T 338 (399)
T ss_pred CCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--------CCCc---eEEEEEcC--c
Confidence 520 12 3345566666777889999999999999999988777663 2232 66999988 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCcccc
Q 007306 564 NRIALGLTNGRVHVIEPLESEVEW 587 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~~~~~ 587 (608)
.+|++++.||.|+.||.++|+.+.
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~ 362 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKF 362 (399)
T ss_pred chheeeccCceEEeeeccccceEE
Confidence 799999999999999999998754
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=251.53 Aligned_cols=280 Identities=15% Similarity=0.176 Sum_probs=226.1
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 337 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l 337 (608)
....|.|+.+. ...+++|..|++|+|||.++-.+ ...+. ||++.|.|+.|..+.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c---------------------~~~L~--GHtGSVLCLqyd~rvi 250 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC---------------------LKILT--GHTGSVLCLQYDERVI 250 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHH---------------------HHhhh--cCCCcEEeeeccceEE
Confidence 46789999875 44589999999999998765544 22222 7999999999998899
Q ss_pred EEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc---eEEEeeCccccEEEEEEe
Q 007306 338 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~ 413 (608)
++|+ |.+|++||+++|+++.++-.|...|..+.|+.. ++++++.|.++.+||+.... +.+.+.||...|+.+.|+
T Consensus 251 isGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 251 VSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred EecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc
Confidence 9999 999999999999999999999999999998643 99999999999999998764 335678999999999996
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeee
Q 007306 414 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 492 (608)
.+++++++.|.+|++|++.+. ..++ +..+|. -.|.|+.+. |+++++| +|.+|++||+..|.+++.+
T Consensus 330 --~kyIVsASgDRTikvW~~st~-----efvR-tl~gHk---RGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 330 --DKYIVSASGDRTIKVWSTSTC-----EFVR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred --cceEEEecCCceEEEEeccce-----eeeh-hhhccc---ccceehhcc--CeEEEecCCCceEEEEeccccHHHHHH
Confidence 469999999999999999994 4555 667887 577776654 7888884 9999999999999999998
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceee--ccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY--AQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~--~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.+ |..-|.++.|. .+.+++|+.||+|+|||+.++........... ....| .+.++ .+.| |...+++++
T Consensus 397 eG--HEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVF--rLQF---D~fqIvsss 466 (499)
T KOG0281|consen 397 EG--HEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVF--RLQF---DEFQIISSS 466 (499)
T ss_pred hc--hHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeE--EEee---cceEEEecc
Confidence 75 68899999985 67899999999999999987653321110000 00122 33444 8888 457899999
Q ss_pred CCCcEEEEeCCCCccc
Q 007306 571 TNGRVHVIEPLESEVE 586 (608)
Q Consensus 571 ~Dg~v~iW~~~~~~~~ 586 (608)
.|.+|.|||..++-+.
T Consensus 467 HddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 467 HDDTILIWDFLNGPPS 482 (499)
T ss_pred CCCeEEEEEcCCCCcc
Confidence 9999999999887654
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=245.89 Aligned_cols=278 Identities=12% Similarity=0.102 Sum_probs=219.6
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
-+.||++|++||+|+.|.+..+|.+..... .-...++.+ |..+|..+.||||.+||++|+.|..+.+||+.++..
T Consensus 229 fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~--~kl~~tlvg--h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~- 303 (519)
T KOG0293|consen 229 FLQFSHNGKYLASASKDSTAIIWIVVYDVH--FKLKKTLVG--HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL- 303 (519)
T ss_pred EEEEcCCCeeEeeccCCceEEEEEEecCcc--eeeeeeeec--ccCceEEEEECCCCCeEEecCchHheeeccCCcchh-
Confidence 457999999999999999999999875221 122334655 999999999999999999999999998887766654
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCC-CCCeEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP-PPIATYFI 370 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~ 370 (608)
..... .++...+.+++|. |..+++|+ |+++..||++ |......++- ...|.+++
T Consensus 304 --------------------~~~y~-~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dla 361 (519)
T KOG0293|consen 304 --------------------RHLYP-SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLA 361 (519)
T ss_pred --------------------hhhcc-cCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEE
Confidence 22221 1366889999999 88999999 9999999997 4445555433 35789999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeec
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 449 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 449 (608)
.++|| .+++.+.|..|++++..+........ ...+|++...+.|++++++.-.+..+++||+... +.++ ...
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-----~lv~-kY~ 434 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN-----KLVR-KYF 434 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh-----hHHH-Hhh
Confidence 99999 88888899999999988766554444 4567999999999999999999999999999863 2333 344
Q ss_pred cCCCCccceEEEEEcC-CCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEe
Q 007306 450 GLVPETTIVNHIQFHP-DQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFD 526 (608)
Q Consensus 450 ~~~~~~~~v~~v~~sp-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd 526 (608)
||... ..+..-+|.- +.+++++| .|+.|+||+..+|+++.++.+ |...|.+++|+|.. .++|+++.||+|+||.
T Consensus 435 Ghkq~-~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG--Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 435 GHKQG-HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG--HSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred ccccc-ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--CcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 55421 1233345543 45788885 899999999999999999975 79999999999855 6789999999999998
Q ss_pred CCC
Q 007306 527 TST 529 (608)
Q Consensus 527 ~~~ 529 (608)
...
T Consensus 512 ~~~ 514 (519)
T KOG0293|consen 512 PSD 514 (519)
T ss_pred CCc
Confidence 764
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-30 Score=254.20 Aligned_cols=271 Identities=24% Similarity=0.284 Sum_probs=232.1
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.++|+++++++++.||.+++|++... ..... +. +|...+..+.|+|+++++++++.||.+.+|++.+++..
T Consensus 14 ~~~~~~~~~~l~~~~~~g~i~i~~~~~~---~~~~~--~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 14 CVAFSPDGKLLATGSGDGTIKVWDLETG---ELLRT--LK--GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV 86 (289)
T ss_pred EEEEcCCCCEEEEeecCcEEEEEEeeCC---CcEEE--Ee--cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence 4579999999999999999999999852 12222 32 38899999999999999999999999999998765331
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
. .+. .|...+.++.|+ ++++++++ ++.+.+||+.+++....+..|...+.+++|
T Consensus 87 ~----------~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 87 R----------TLT-------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred E----------EEe-------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 0 111 477899999999 57888888 999999999999999999999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
+|++ ++++++.|+.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||+++++ .+. ....
T Consensus 144 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-----~~~-~~~~ 217 (289)
T cd00200 144 SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK-----CLG-TLRG 217 (289)
T ss_pred cCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCc-----eec-chhh
Confidence 9999 88888889999999999999898898899899999999999999999999999999998743 233 2334
Q ss_pred CCCCccceEEEEEcCCCCEEEEEe-CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 451 LVPETTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
|. ..+.+++|+|++.+++++. ++.|++||+.+++....+. .|...+.+++|+|+++++++++.||.|++|+
T Consensus 218 ~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 218 HE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 44 5899999999988888864 9999999999888888876 3678999999999999999999999999996
No 50
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-30 Score=288.24 Aligned_cols=283 Identities=13% Similarity=0.155 Sum_probs=224.2
Q ss_pred ceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCc---eeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEec
Q 007306 213 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSE---CRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKW 288 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~---~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~ 288 (608)
...+.|+|+|+++|+|+.|++|++|+......... .....+ .+...|.+++|+| ++.+|++++.||+|++||+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL---ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe---cccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 34568999999999999999999999853211111 011112 1456899999987 5789999999999999988
Q ss_pred CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCC
Q 007306 289 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPP 364 (608)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~ 364 (608)
.+++. +... .+|...|++++|+ +.+|++|+ |++|++||+.++..+..+..+ .
T Consensus 563 ~~~~~---------------------~~~~--~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~ 618 (793)
T PLN00181 563 ARSQL---------------------VTEM--KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-A 618 (793)
T ss_pred CCCeE---------------------EEEe--cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-C
Confidence 76543 1111 1699999999997 67999999 999999999999998888754 5
Q ss_pred CeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCc-eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCce-ec
Q 007306 365 IATYFILLP-QD-LFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-LC 440 (608)
Q Consensus 365 ~v~~~~~~~-~~-~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-~~ 440 (608)
.+.++.|++ ++ .|++|+.||.|++||+++++ .+..+.+|...|.++.|. ++..+++++.|++|++||++.... ..
T Consensus 619 ~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~ 697 (793)
T PLN00181 619 NICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGIN 697 (793)
T ss_pred CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccC
Confidence 788999954 57 99999999999999998765 567788899999999997 678999999999999999975321 11
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeec-----------CCCCCCCeEEEEEec
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV-----------PDKMDLPITYATYSC 508 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~~~~s~ 508 (608)
..++. .+.+|. ..+..++|+|++.+|+++ .|+.|++|+.....++..+. ...+...|.+++|+|
T Consensus 698 ~~~l~-~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 698 ETPLH-SFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred CcceE-EEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 23444 456777 688999999999999994 89999999987654433221 122356799999999
Q ss_pred CCCEEEEEEcCCeEEEEeC
Q 007306 509 DGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iwd~ 527 (608)
++..|++|+.||.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999996
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-32 Score=269.39 Aligned_cols=290 Identities=17% Similarity=0.232 Sum_probs=244.5
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
.+.+|..++|+|...+++++-.+|.|++||..-+.+ +... . .|.++|..++|+ +.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tl---------------------i~rF-d-eHdGpVRgv~FH~~qp 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTL---------------------IDRF-D-EHDGPVRGVDFHPTQP 64 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhH---------------------Hhhh-h-ccCCccceeeecCCCC
Confidence 467899999999999999999999999988755543 1111 1 699999999999 78
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 413 (608)
++++|+ |-.|+||+..+.+++.++.+|-.-|..+.|++.- +|+++++|.+|+||+..+++++..+.||...|.|..|+
T Consensus 65 lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 999999 8999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceec-----------------------ccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 414 LSLNVLVSSGADAQLCVWDAVGWKKLC-----------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i~vwd~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
|....++++|-|.+|+|||+..-+... .-.++.+.+||. -.|+.++|+|.-..+
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD---RGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD---RGVNWAAFHPTLPLI 221 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc---cccceEEecCCcceE
Confidence 999999999999999999997532211 112334667888 689999999999999
Q ss_pred EEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccc
Q 007306 471 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 549 (608)
Q Consensus 471 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~ 549 (608)
++| .|+.|++|.+...+.-..=...+|.+.|.++-|+|...++++.|+|++|+|||+.....+.++... ..
T Consensus 222 VSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--------nd 293 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--------ND 293 (1202)
T ss_pred EecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--------CC
Confidence 995 789999999865443222222358999999999999999999999999999999999988888532 56
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 550 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 550 ~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
..| .++-+| ..+++|.| .|+-+.|+.+...++
T Consensus 294 RFW--~laahP-~lNLfAAg-HDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 294 RFW--ILAAHP-ELNLFAAG-HDSGMIVFKLERERP 325 (1202)
T ss_pred eEE--EEEecC-Ccceeeee-cCCceEEEEEcccCc
Confidence 677 788889 67777776 455567777765544
No 52
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.6e-32 Score=271.42 Aligned_cols=270 Identities=16% Similarity=0.210 Sum_probs=209.9
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee------------------------------------eccc
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE------------------------------------EENV 300 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~------------------------------------~~~~ 300 (608)
.|.+.||++.||+||+|||+||.||.|+||.+...+.... ....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5999999999999999999999999999999866211000 0000
Q ss_pred ceeeEEeeCCCCeeee--ccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-
Q 007306 301 NMESQLYQPSSKLVMT--NDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 375 (608)
Q Consensus 301 ~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 375 (608)
... .+.+.....+.. .....||.+.|.++.|+ +++|++++ |.+|++|++...+|++.|. |..-|+|++|+|-+
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000 011111111110 11112799999999999 99999999 9999999999999999996 99999999999977
Q ss_pred -eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCC
Q 007306 376 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 376 -~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 454 (608)
+|++|+-||.|+||++...+.+..... ..-|++++|.|||+..+.|+.+|.+++|+....+......+. ...+....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~-~~~~Kk~~ 500 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR-LHNKKKKQ 500 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe-eccCcccc
Confidence 999999999999999998776655443 478999999999999999999999999999886554444443 11111111
Q ss_pred ccceEEEEEcCCC--CEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 455 TTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 455 ~~~v~~v~~sp~~--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
...|+.+.|.|.. +.|+++.|..|+|||.++..++..|++......-....|+.||++|+++++|..|+||+....
T Consensus 501 ~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 501 GKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 1369999999764 367779999999999998899989887655666678899999999999999999999998543
No 53
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-33 Score=246.39 Aligned_cols=278 Identities=12% Similarity=0.141 Sum_probs=234.0
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecC--CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD--NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~--~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.|||||++|++|+.||.|.+|+..+++....+... -.+ .-|.++|.|+.||.|...||+|+.||.|++|.+.++.+.
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ-Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~Cl 298 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ-AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCL 298 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhh-hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHH
Confidence 69999999999999999999999864422222110 000 127899999999999999999999999999988777662
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
.. +...|...|+|+.|+ +..+.+++ |.++++.-+.+|++++.+++|..-|+...|
T Consensus 299 Rr----------------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 299 RR----------------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred HH----------------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 11 112599999999999 77899999 999999999999999999999999999999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC--ccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
.+|| .+++++.||+|++|+..+++++.+|+. ...+|+++..-| +...++++...++|.+-++.. ..++++
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------QvVrsf 430 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QVVRSF 430 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eEEeee
Confidence 9999 999999999999999999999998875 456788888777 557788999999999999876 455544
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
..|... .+...+.+++|.|.++++ +.|+.++.|.+.+|+.-+++.. |...+..++-+|..+.|++-++||.+++|.
T Consensus 431 sSGkRE-gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V--hEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 431 SSGKRE-GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV--HEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCCcc-CCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec--ccccccccccCcccchhhhhcccchhhhcC
Confidence 444331 145667789999999998 8999999999999999888865 688899999999999999999999999995
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-31 Score=262.10 Aligned_cols=274 Identities=15% Similarity=0.179 Sum_probs=232.6
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
++|+|.-.++.++-..|.|++||..- +.+.. ++.. |.++|..++|+|++.++++||.|-.|++|+..+.++.
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM----~tli~-rFde--HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl- 86 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRM----GTLID-RFDE--HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL- 86 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhh----hhHHh-hhhc--cCCccceeeecCCCCeEEecCCccEEEEEecccceeh-
Confidence 37999999999999999999999874 33332 1433 9999999999999999999999999999988777652
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEc
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 372 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 372 (608)
+. +. ||-+.|..+.|+ -.++++++ |.+|+||+..+++++..+.+|..-|.|..|+
T Consensus 87 -----------ft---------L~--GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh 144 (1202)
T KOG0292|consen 87 -----------FT---------LL--GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH 144 (1202)
T ss_pred -----------hh---------hc--cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccC
Confidence 11 12 799999999999 67999999 8999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCc-----------------------------eEEEeeCccccEEEEEEeCCCCEEEEE
Q 007306 373 PQD-LFAFGFDDSSILVHCPCTKK-----------------------------TKAKLKGHQNRITCLAYSLSLNVLVSS 422 (608)
Q Consensus 373 ~~~-~l~~~~~d~~i~vwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~ 422 (608)
|.. .+++++-|.+|+|||+..-+ ....+.||...|+-++|+|.-..+++|
T Consensus 145 ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG 224 (1202)
T KOG0292|consen 145 PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG 224 (1202)
T ss_pred CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEec
Confidence 988 99999999999999985210 124567899999999999999999999
Q ss_pred cCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCe
Q 007306 423 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI 501 (608)
Q Consensus 423 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 501 (608)
+.|+.|++|.....+ ...+. ...||. +.|.++-|+|...++++ |.|++|++||+...+.+++|... .+..
T Consensus 225 ~DDRqVKlWrmnetK---aWEvD-tcrgH~---nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--ndRF 295 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNETK---AWEVD-TCRGHY---NNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--NDRF 295 (1202)
T ss_pred CCcceeeEEEecccc---ceeeh-hhhccc---CCcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CCeE
Confidence 999999999987632 22333 456888 79999999999999999 79999999999999999999753 7889
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 502 TYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 502 ~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
+.++-+|..+++++|. |+-+.||.++.
T Consensus 296 W~laahP~lNLfAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 296 WILAAHPELNLFAAGH-DSGMIVFKLER 322 (1202)
T ss_pred EEEEecCCcceeeeec-CCceEEEEEcc
Confidence 9999999999888775 44455666653
No 55
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.2e-33 Score=248.31 Aligned_cols=266 Identities=17% Similarity=0.246 Sum_probs=222.4
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~ 297 (608)
.--|...+++|..|++|+|||.++ ..|... | .||++.|.|+.|. .+.+++||.|.+|++||+++++.
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~----~~c~~~-L--~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~---- 269 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNS----LECLKI-L--TGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP---- 269 (499)
T ss_pred EEecchhhhcccccCceEEecccc----HHHHHh-h--hcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch----
Confidence 334677899999999999999983 555543 5 4599999999985 45899999999999888776654
Q ss_pred cccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCc---eeeEecCCCCCeEEEEEcC
Q 007306 298 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLP 373 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~ 373 (608)
+..++ +|...|..+.|+++++++++ |.++.+||+.... +.+.+.+|...|+.+.|+.
T Consensus 270 -----------------l~tli--hHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 270 -----------------LNTLI--HHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred -----------------hhHHh--hhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc
Confidence 33333 69999999999999999999 9999999997654 3456679999999998854
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCC
Q 007306 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 453 (608)
Q Consensus 374 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 453 (608)
. +|++++.|.+|++|++.+++.++++.+|...|-|+.+ .|+++++|+.|.+|++||+.. +.+++ +.+||.
T Consensus 331 k-yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~-----G~cLR-vLeGHE- 400 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIEC-----GACLR-VLEGHE- 400 (499)
T ss_pred c-eEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccc-----cHHHH-HHhchH-
Confidence 4 9999999999999999999999999999999999877 579999999999999999998 45677 788998
Q ss_pred CccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce---------eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 454 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH---------TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 454 ~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
.-|.++.|. .+.+++ +.||+|++||+.++.. +.++. .|.+.|..+.|. ...+++++.|.+|.
T Consensus 401 --eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvsssHddtIL 472 (499)
T KOG0281|consen 401 --ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISSSHDDTIL 472 (499)
T ss_pred --Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEeccCCCeEE
Confidence 789999997 578888 5999999999976542 22232 468899999985 56799999999999
Q ss_pred EEeCCCCcee
Q 007306 524 VFDTSTLELR 533 (608)
Q Consensus 524 iwd~~~~~~~ 533 (608)
|||..++-.-
T Consensus 473 iWdFl~~~~~ 482 (499)
T KOG0281|consen 473 IWDFLNGPPS 482 (499)
T ss_pred EEEcCCCCcc
Confidence 9999877543
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2e-30 Score=224.87 Aligned_cols=279 Identities=14% Similarity=0.177 Sum_probs=235.5
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
+|...|.+++|+.+|..|++|+.|+++.+|++........ ....+|.+.|-.++|.
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------------~~~~gh~~svdql~w~~~~ 76 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------------LVYRGHTDSVDQLCWDPKH 76 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---------------------hcccCCCcchhhheeCCCC
Confidence 4899999999999999999999999999999876643111 1112799999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
...+++++ |.+|++||+.++++...+....+.+ .+.|+|+| ++++++.|..|...|.++.+.....+ ....++-+.
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEIS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeee
Confidence 67889888 9999999999999999888666666 67899999 99999999999999999888776665 455688889
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceee
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~ 490 (608)
|+-++.+++.....|.|.|..... .++++ ....|. ....+|.|+|+|+++++| .|..+.+||+...-+++
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsyps-----Lkpv~-si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPS-----LKPVQ-SIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccc-----ccccc-ccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence 998888888778789999988776 45666 455676 678899999999999995 89999999999988888
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.+.. +.-+|..+.||.||++||+||+|..|-|=++++|..+..+.. .++.+ .|+||| ...+||-++
T Consensus 226 ~isR--ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~---------~~~t~--tVAWHP-k~~LLAyA~ 291 (313)
T KOG1407|consen 226 CISR--LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC---------EGPTF--TVAWHP-KRPLLAYAC 291 (313)
T ss_pred eecc--ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec---------cCCce--eEEecC-CCceeeEEe
Confidence 8864 589999999999999999999999999999999999888763 44455 899999 688999888
Q ss_pred CC---------CcEEEEeCC
Q 007306 571 TN---------GRVHVIEPL 581 (608)
Q Consensus 571 ~D---------g~v~iW~~~ 581 (608)
+| |.|+++.+.
T Consensus 292 ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 292 DDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCCCCccccccceeEEecCC
Confidence 66 466666553
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-30 Score=250.07 Aligned_cols=268 Identities=16% Similarity=0.227 Sum_probs=234.2
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.++|...+++++-.+|.|.||+.++ ....+.+.. ..-+|.+..|-+..+++++|+.|..|+||+..+.+.
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyet---qtmVksfeV----~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek-- 89 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYET---QTMVKSFEV----SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK-- 89 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEeccc---ceeeeeeee----cccchhhheeeeccceEEEecCCceEEEEeccccee--
Confidence 47999999999999999999999985 233333322 577999999999999999999999999988777664
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC-CceeeEecCCCCCeEEEEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFIL 371 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~ 371 (608)
++.+. .|.+.|.+++.+ ..++++++ |-+|++||-+. ..+.+++.+|..-|.+++|
T Consensus 90 --------V~~Fe-------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 90 --------VKTFE-------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred --------eEEee-------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence 12222 699999999999 77999999 89999999875 5788999999999999999
Q ss_pred cCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 372 LPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 372 ~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
+|.+ .+++++-|++|++|.+.+..+..++++|...|+|+.+-+. ..+|++|+.|.+|++||..+ ..+++ +
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-----k~CV~-T 222 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-----KSCVQ-T 222 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-----HHHHH-H
Confidence 9988 9999999999999999999999999999999999999874 46899999999999999998 56777 7
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 524 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i 524 (608)
.+||. ..|..+.|+|.-..+++ +.||+++||+..|.+...++..+ ...+++++-.+.+..++.|..+|.|.+
T Consensus 223 LeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 223 LEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred hhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE
Confidence 88998 79999999999999999 49999999999998888777654 788999999998888999987776644
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2.7e-30 Score=235.44 Aligned_cols=270 Identities=16% Similarity=0.252 Sum_probs=223.2
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCC---EEEEEeCCCcEEEEecCCCcceeeec
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD---FLVALTQTATHKLWKWQSNKQSLEEE 298 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~---~l~s~s~dg~i~iw~~~~~~~~~~~~ 298 (608)
+++|.+|++||++++||.. +.+... + .||.++|.+++|--... .++++|.|.++++|.++.+.....
T Consensus 115 ~~~IltgsYDg~~riWd~~-----Gk~~~~-~--~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~-- 184 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLK-----GKSIKT-I--VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK-- 184 (423)
T ss_pred CceEEEeecCCeeEEEecC-----CceEEE-E--ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh--
Confidence 7899999999999999997 444422 4 45999999888865333 599999999999998766653111
Q ss_pred ccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC------------------------
Q 007306 299 NVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE------------------------ 351 (608)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~------------------------ 351 (608)
......||...|.+|+.. |..+++|+ |.++.+|+..
T Consensus 185 -----------------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 185 -----------------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred -----------------HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 111122799999999987 88999999 9999999932
Q ss_pred -CCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEE
Q 007306 352 -TFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 430 (608)
Q Consensus 352 -~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~v 430 (608)
++.++.++.+|..+|.++.|++.+.+++++.|.+|+.||+.++..+..+.+ ...++|+..+|..++|++|+.|..|++
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl 326 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRL 326 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceee
Confidence 133566788999999999999955999999999999999999999888874 457999999999999999999999999
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--EeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEe
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s 507 (608)
||.+++. ...+...+.+|. +.|.++.|+|...++++ +.|+++++||+++-+ ++..+.. |...|.++.|.
T Consensus 327 ~DPR~~~---gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~--h~DKvl~vdW~ 398 (423)
T KOG0313|consen 327 WDPRTGD---GSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAG--HNDKVLSVDWN 398 (423)
T ss_pred cCCCCCC---CceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeecc--CCceEEEEecc
Confidence 9999864 344454678998 79999999999877766 489999999999877 8778764 69999999996
Q ss_pred cCCCEEEEEEcCCeEEEEeCC
Q 007306 508 CDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iwd~~ 528 (608)
++.+|++|+.|++|+|+.-.
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -CCceEEeccCcceEEEeccc
Confidence 46689999999999998754
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.98 E-value=8.9e-32 Score=247.60 Aligned_cols=280 Identities=16% Similarity=0.197 Sum_probs=233.9
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
.|.+.|..+.|-++...|++|+.|..|++|++...+.. ....+ .|..++|+++.|. +
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-------------------~~~tL--aGs~g~it~~d~d~~~ 231 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE-------------------LISTL--AGSLGNITSIDFDSDN 231 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhh-------------------hhhhh--hccCCCcceeeecCCC
Confidence 39999999999999888999999999999998666531 11111 1567889999999 7
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 412 (608)
.++++++ |+.+++|++...+...++.+|.+.|+++.|.... .+++|+.|.+|+.||+....+.+++- ....+..|..
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEe
Confidence 7777777 9999999999999999999999999999998888 89999999999999999988887664 3445666666
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeee
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~ 491 (608)
+ ...+++|-.|++|++||.++... ...++.+ +.|+++..+++|..+++ +.|..+.+.|+++.+....
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~~~-----~~sv~~g-----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSADK-----TRSVPLG-----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQT 378 (459)
T ss_pred c--ceeeeecccccceEEEeccCCce-----eeEeecC-----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEE
Confidence 5 46788999999999999998543 3323332 68999999999999998 5999999999999988888
Q ss_pred ecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 492 LVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 492 ~~~~~~--~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
+...+. ....+.+.|||++.|+++||.||.|+||++.++++...+... + .+ -.+++++|+| -|..|+++
T Consensus 379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-----~--s~-~aI~s~~W~~-sG~~Llsa 449 (459)
T KOG0288|consen 379 FSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS-----T--SN-AAITSLSWNP-SGSGLLSA 449 (459)
T ss_pred eeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC-----C--CC-cceEEEEEcC-CCchhhcc
Confidence 776432 445889999999999999999999999999999998887643 1 21 1356999999 69999999
Q ss_pred eCCCcEEEEe
Q 007306 570 LTNGRVHVIE 579 (608)
Q Consensus 570 s~Dg~v~iW~ 579 (608)
+.++.+.+|.
T Consensus 450 dk~~~v~lW~ 459 (459)
T KOG0288|consen 450 DKQKAVTLWT 459 (459)
T ss_pred cCCcceEecC
Confidence 9999999994
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.98 E-value=2.6e-30 Score=235.61 Aligned_cols=273 Identities=15% Similarity=0.195 Sum_probs=221.6
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.+.|.++... ++++++|+.||.+++||...... .... ||.++|.+++|. +.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----------------------~~~~--Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----------------------KTIV--GHTGPIKSVAWVIKNS 157 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceE----------------------EEEe--cCCcceeeeEEEecCC
Confidence 89999999888 78999999999999998654432 1111 799999999988 33
Q ss_pred ---EEEEEe-CCcEEEEEcCCCce----eeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC--------------
Q 007306 336 ---HLFSAS-GGKISIFSLETFQT----LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-------------- 392 (608)
Q Consensus 336 ---~l~s~~-d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~-------------- 392 (608)
.|++++ |.++++|..+.+.. ++..++|...|-+++..++| .+++|+.|.+|.+|+..
T Consensus 158 ~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 158 SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 599999 99999999887654 33345999999999999999 99999999999999932
Q ss_pred -----------CCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEE
Q 007306 393 -----------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 461 (608)
Q Consensus 393 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 461 (608)
++.++-.+.||..+|.++.|++ ...+.+++.|.+|+.||+.++. ...++..+ ..++++
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~-----~~~~~~~~-----ksl~~i 306 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGG-----LKSTLTTN-----KSLNCI 306 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccc-----ceeeeecC-----cceeEe
Confidence 1234567889999999999998 6678999999999999999954 33323322 468999
Q ss_pred EEcCCCCEEEE-EeCCcEEEEECCCCc---eeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCc-eeEE
Q 007306 462 QFHPDQIHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQ 535 (608)
Q Consensus 462 ~~sp~~~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~-~~~~ 535 (608)
..+|..++|++ +.|..|++||.+++. ..+++. +|...|.++.|+|.. ..|++|+.||++++||+++.+ ++..
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 99999999999 599999999998753 233443 579999999999965 467899999999999999877 6766
Q ss_pred EeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 536 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 536 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+. || ... +.++.|+. +..+++||.|.+|+|+.-.
T Consensus 385 I~-------~h-~DK--vl~vdW~~--~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IA-------GH-NDK--VLSVDWNE--GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ec-------cC-Cce--EEEEeccC--CceEEeccCcceEEEeccc
Confidence 65 55 433 55999986 7899999999999998753
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=8.9e-30 Score=221.57 Aligned_cols=287 Identities=15% Similarity=0.194 Sum_probs=227.7
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.||..+++.+.|+.+|.+|.+++.|.+..+|-...++. +-... ||.+.|+|+...
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer---------------------lGty~--GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER---------------------LGTYD--GHTGAVWCCDIDWD 63 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCce---------------------eeeec--CCCceEEEEEecCC
Confidence 45999999999999999999999999999886544432 22111 899999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC-----CCcEEEEeCC-------CCceEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPC-------TKKTKAK 399 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-----d~~i~vwd~~-------~~~~~~~ 399 (608)
.+.+++|+ |.++++||+++|+++..++ ...+|..+.|+++| +++...+ .+.|.++|++ ..++...
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEE
Confidence 78999999 9999999999999999987 45678999999999 6665543 3579999988 4456777
Q ss_pred eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcE
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQI 478 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i 478 (608)
+..+.+.++.+.|.|-+++|++|..||.|..||++++. ..+. ....|. ..|++++++||..++++ +.|.+-
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~----~~v~-s~~~h~---~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK----ELVD-SDEEHS---SKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred ecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc----eeee-chhhhc---cccccccccCCcceEEecccCccc
Confidence 77788999999999999999999999999999999854 2222 344565 68999999999999999 599999
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE--EeCCCCceeEEEece-----eeccCCCccccc
Q 007306 479 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--FDTSTLELRCQINLT-----AYAQPGTISLEL 551 (608)
Q Consensus 479 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i--wd~~~~~~~~~~~~~-----~~~~~g~~~~~v 551 (608)
++||+.+.++++++.. ..+|.+.+++|...+++.|+.....-| -+.+.|+....+.-. .-...|| -+++
T Consensus 215 kl~D~~tl~v~Kty~t---e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPI 290 (327)
T KOG0643|consen 215 KLVDVRTLEVLKTYTT---ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPI 290 (327)
T ss_pred eeeeccceeeEEEeee---cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCc
Confidence 9999999999999975 789999999998888887765433222 222233222211100 0012355 5556
Q ss_pred ccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 552 YPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 552 ~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+ +++||| +|...+||+.||.||+.-..
T Consensus 291 N--svAfhP-dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 291 N--SVAFHP-DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred c--eeEECC-CCcccccCCCCceEEEEEec
Confidence 6 999999 89999999999999997654
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3.9e-31 Score=248.31 Aligned_cols=275 Identities=12% Similarity=0.160 Sum_probs=227.8
Q ss_pred EeecC-CCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 216 STSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 216 ~~~s~-dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
+.|.| .+..|++++.|+.|+||++.+ .+.|.+. + .||..+|..++|+++|..++++|.|+.+++||++++.+
T Consensus 220 i~~fp~~~hLlLS~gmD~~vklW~vy~---~~~~lrt-f--~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~- 292 (503)
T KOG0282|consen 220 IQWFPKKGHLLLSGGMDGLVKLWNVYD---DRRCLRT-F--KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQV- 292 (503)
T ss_pred hhhccceeeEEEecCCCceEEEEEEec---Ccceehh-h--hcchhhhhhhhccccCCeeeeeecceeeeeeccccceE-
Confidence 36888 889999999999999999985 3455442 3 45999999999999999999999999999888877765
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C-CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 370 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 370 (608)
.... .-...++|+.|. + +.+++|+ |+.|+.||+.+++.++.+..|-+.|..+.
T Consensus 293 --------------------~~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 293 --------------------LSRF---HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDIT 349 (503)
T ss_pred --------------------EEEE---ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeE
Confidence 2211 244667899999 4 6777777 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
|-++| .+++.++|++++||+.+.+..++.... +.....++..+|++.+++.-+.|+.|.++.+...-+. .....+
T Consensus 350 F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~---nkkK~f 426 (503)
T KOG0282|consen 350 FVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL---NKKKRF 426 (503)
T ss_pred EccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc---CHhhhh
Confidence 99999 999999999999999988876654332 3445678999999999999999999999987652211 112245
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEe
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFD 526 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd 526 (608)
+||... +.-..+.|||||++|++| .||.+.+||.++-+.+..+.. |..++..+.|+|.. ..+|+++.||.|++|+
T Consensus 427 eGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lka--h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 427 EGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKA--HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcccc--CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 666521 455679999999999997 899999999999999988875 58999999999965 5789999999999996
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.9e-30 Score=265.62 Aligned_cols=306 Identities=18% Similarity=0.197 Sum_probs=235.0
Q ss_pred EeecCCCCeEEEee--cCCeEEEeeccCCCC---------CCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEE
Q 007306 216 STSLPDADSAVCAK--SLEKSVNLKLQLINE---------PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHK 284 (608)
Q Consensus 216 ~~~s~dg~~l~~~~--~d~~i~iWd~~~~~~---------~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~ 284 (608)
+..+|||..++||+ .|+.++||+.+.... +..+- ++.. |.+.|.|+.|||||++||+||.|+.|.
T Consensus 19 Idv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~--~m~~--h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 19 IDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLC--TMDD--HDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred EEecCCceeEecCCccccccceeeccccccchhhhhhcccchhhe--eecc--ccCceeEEEECCCCCeEeeccCcceEE
Confidence 57999999999999 999999999764210 11111 1333 999999999999999999999999999
Q ss_pred EEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCceeeEecCCCC
Q 007306 285 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPP 364 (608)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~ 364 (608)
||+...... ..+ .++.|. .-+++..+++..+.+|..
T Consensus 95 iW~~~~~~~-------------------------------~~~-----------fgs~g~--~~~vE~wk~~~~l~~H~~ 130 (942)
T KOG0973|consen 95 IWERAEIGS-------------------------------GTV-----------FGSTGG--AKNVESWKVVSILRGHDS 130 (942)
T ss_pred EeeecccCC-------------------------------ccc-----------cccccc--ccccceeeEEEEEecCCC
Confidence 997643100 000 000000 113345678889999999
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
.|..++|+|++ ++++++.|++|.+|+..+.+.++.+++|.+.|..+.|.|-|++|++-+.|++|++|++.+..... .
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~ 208 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--S 208 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--e
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999977643221 1
Q ss_pred eeeeeccCCCCccceEEEEEcCCCCEEEE--EeC---CcEEEEECCCCceeeeecCCCCCCCeEEEEEecC-----CC--
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-----GK-- 511 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~-- 511 (608)
+. -+..+.+.......+.|||||.+|++ +.. .++.|.+-.+.+.-..+.+ |.+++..+.|+|. .+
T Consensus 209 It-~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng 285 (942)
T KOG0973|consen 209 IT-KPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNG 285 (942)
T ss_pred ec-cchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccC
Confidence 11 11122222246778999999999998 322 3688998877776666654 6889999999971 11
Q ss_pred ----------EEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 512 ----------CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 512 ----------~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
.+|+|+.|++|.||.....+++....- .. +.. +++++|+| ||..|..||.||+|.+..+.
T Consensus 286 ~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~--lf-----~~S--I~DmsWsp-dG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 286 TSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHN--LF-----NKS--IVDMSWSP-DGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred CccCCCcceEEEEEecCCccEEEEecCCCCchhhhhh--hh-----cCc--eeeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence 678999999999999977776654321 11 222 55999999 89999999999999999998
Q ss_pred CCc
Q 007306 582 ESE 584 (608)
Q Consensus 582 ~~~ 584 (608)
..+
T Consensus 356 e~E 358 (942)
T KOG0973|consen 356 EKE 358 (942)
T ss_pred hHH
Confidence 755
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=3.1e-30 Score=243.64 Aligned_cols=294 Identities=19% Similarity=0.231 Sum_probs=225.8
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|+..|.++++.|.|.+|++||.|.+|++||+..-...+. ....... .....|+++.|+ +.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----------------~fr~l~P--~E~h~i~sl~ys~Tg~ 227 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----------------SFRQLQP--CETHQINSLQYSVTGD 227 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccch----------------hhhccCc--ccccccceeeecCCCC
Confidence 899999999999999999999999999999876543111 1111111 345678999999 77
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeE------------ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-eEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLAT------------FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAK 399 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~-~~~~ 399 (608)
.|++.+ ....+|+|-...+.... -++|...++|.+|+|+. .+++++.||++++||+...+ ..+.
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 766666 88999999764433322 24888899999999998 99999999999999987653 2333
Q ss_pred ee-----CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E
Q 007306 400 LK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 473 (608)
Q Consensus 400 ~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~ 473 (608)
++ +..-+++.++|+|+|+++|+|+.||.|.+|+..+... .+...+...|.+ ...|++|.||+||++|++ |
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH~~-g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAHLP-GQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc---ccceEeeeccCC-CCceeEEEeccccchhhhcc
Confidence 32 2345788999999999999999999999999865332 222324556652 137999999999999999 8
Q ss_pred eCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEeCCCCceeEEEeceeeccCCC
Q 007306 474 HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLELRCQINLTAYAQPGT 546 (608)
Q Consensus 474 ~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~g~ 546 (608)
.|+++++||++..+ ++.+..+-....+-+.++|||+.++|++|+. .|.+++||..+.+.+..+...
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~------- 456 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS------- 456 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-------
Confidence 99999999998654 5555444334567788999999999999865 478999999999888887542
Q ss_pred cccccccEEEEEecCCCCEEEEEeCCCcEEEE-eCCCCc
Q 007306 547 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVI-EPLESE 584 (608)
Q Consensus 547 ~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW-~~~~~~ 584 (608)
. ..|..+.||| .-+.+..|+.||.++|+ |.....
T Consensus 457 -~--aSvv~~~Whp-kLNQi~~gsgdG~~~vyYdp~~S~ 491 (641)
T KOG0772|consen 457 -T--ASVVRCLWHP-KLNQIFAGSGDGTAHVYYDPNESI 491 (641)
T ss_pred -C--ceEEEEeecc-hhhheeeecCCCceEEEECccccc
Confidence 2 3355899999 68889999999999875 555433
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-28 Score=219.28 Aligned_cols=286 Identities=15% Similarity=0.137 Sum_probs=224.0
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
-.+.|.++.|+++|.+|++++.|.+++|||..++.+. +... .++..+..++|. .+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~---------------------~ti~--skkyG~~~~~Fth~~~ 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV---------------------KTIN--SKKYGVDLACFTHHSN 69 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee---------------------eEee--cccccccEEEEecCCc
Confidence 3679999999999999999999999998887776652 1111 245567777777 44
Q ss_pred EEEEEe---CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 336 HLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 336 ~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
.++.++ |.+|+..++.+.+.++.|.+|...|.+++.+|-+ .+++++.|++|++||++..++...+.... -..++
T Consensus 70 ~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~A 147 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAA 147 (311)
T ss_pred eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--Cccee
Confidence 444443 7899999999999999999999999999999999 99999999999999999887776665333 34578
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceee
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~ 490 (608)
|+|+|-++|++.....|++||++.-.. .+..++.-.. +.....+.+.|||||++|+.+ ..+.+++.|.-+|....
T Consensus 148 fDp~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~ 223 (311)
T KOG1446|consen 148 FDPEGLIFALANGSELIKLYDLRSFDK---GPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS 223 (311)
T ss_pred ECCCCcEEEEecCCCeEEEEEecccCC---CCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee
Confidence 999999999998888999999998542 2333222110 111578999999999999986 77889999999999888
Q ss_pred eecCCCCCC-CeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 491 QLVPDKMDL-PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 491 ~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
++....... --...+|+||++++++|+.||+|.+|++++|..+..+... .... +.++.|+| .-.++||+
T Consensus 224 tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------~~~~--~~~~~fnP-~~~mf~sa 293 (311)
T KOG1446|consen 224 TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------NGGP--VSCVRFNP-RYAMFVSA 293 (311)
T ss_pred eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------CCCC--ccccccCC-ceeeeeec
Confidence 887653322 2257889999999999999999999999999998888732 1333 34888999 45566665
Q ss_pred eCCCcEEEEeCCCCc
Q 007306 570 LTNGRVHVIEPLESE 584 (608)
Q Consensus 570 s~Dg~v~iW~~~~~~ 584 (608)
+..+-+|=+...+
T Consensus 294 --~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 294 --SSNLVFWLPDEDA 306 (311)
T ss_pred --CceEEEEeccccc
Confidence 5679999887543
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=6.2e-31 Score=226.43 Aligned_cols=272 Identities=14% Similarity=0.152 Sum_probs=226.2
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~ 297 (608)
+.|+|-+|++++.|+.-.+-+-+ ++...- ++++ |.+.||+...+.+-...|+++.|-+.++||.-++..
T Consensus 25 itp~g~flisa~kd~~pmlr~g~----tgdwig-tfeg--hkgavw~~~l~~na~~aasaaadftakvw~a~tgde---- 93 (334)
T KOG0278|consen 25 ITPDGYFLISASKDGKPMLRNGD----TGDWIG-TFEG--HKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE---- 93 (334)
T ss_pred CCCCceEEEEeccCCCchhccCC----CCCcEE-eeec--cCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh----
Confidence 78999999999999987666555 344443 2444 999999999999999899999998888776554433
Q ss_pred cccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC-ceeeEecCCCCCeEEEEEcC
Q 007306 298 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP 373 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~ 373 (608)
+... .|+.-|.+++|+ .++|++|+ +..++|||++.. .+...+.+|.+.|..+.|..
T Consensus 94 -----------------lhsf---~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 94 -----------------LHSF---EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred -----------------hhhh---hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec
Confidence 3222 488999999999 77999999 999999999864 35677889999999999998
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC
Q 007306 374 QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 452 (608)
Q Consensus 374 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 452 (608)
.. .|++..+|++|++||.++++.++.+. ...+|+++.++++|+++.+ ...+.|.+||..+....+...+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P------- 224 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMP------- 224 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCc-------
Confidence 88 89999999999999999999999987 5678999999999987655 45678999999985443332222
Q ss_pred CCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 453 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 453 ~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
..|.+..++|+...+++ +.|..++.||..+|+.+..+.. +|.++|.++.|+|||...++||+||+|++|.+..++
T Consensus 225 ---~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk-gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 225 ---CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK-GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ---cccccccccCCCceEEecCcceEEEEEeccCCceeeeccc-CCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 56889999999888877 5899999999999999888733 579999999999999999999999999999998776
Q ss_pred ee
Q 007306 532 LR 533 (608)
Q Consensus 532 ~~ 533 (608)
..
T Consensus 301 ~~ 302 (334)
T KOG0278|consen 301 TY 302 (334)
T ss_pred ch
Confidence 44
No 67
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=246.25 Aligned_cols=349 Identities=14% Similarity=0.155 Sum_probs=268.7
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeC-----------CCEEEEEeCCCc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS-----------GDFLVALTQTAT 282 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~-----------g~~l~s~s~dg~ 282 (608)
++..|.|....|...-.|..++|||+.+.+..+++...-. |..-||.+.--|. ...++|++.|++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~ly----HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~T 403 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLY----HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGT 403 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeee----ccceeeeeccccccccCcccccCCccceeEecCCCc
Confidence 4567999999999999999999999999888888876533 8999999887662 124899999999
Q ss_pred EEEEecCCCccee----eecccceeeEEeeCCCCeeeec-----------cccCCCCCCeEEEEEe--CCEEEEEe-CCc
Q 007306 283 HKLWKWQSNKQSL----EEENVNMESQLYQPSSKLVMTN-----------DIAADPKDSISCFALR--GSHLFSAS-GGK 344 (608)
Q Consensus 283 i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~v~~s--~~~l~s~~-d~~ 344 (608)
|++|++....... ...+....-.+|.-.+...+.. ... +..-.+.+++.+ |++|++|. .|+
T Consensus 404 IRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~-d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 404 IRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTC-DSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred EEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhc-CcccceEEEEECCCcceecccCccCc
Confidence 9999997732111 0001110001111111111000 000 245678999999 99999999 899
Q ss_pred EEEEEcCCCceeeEecCCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCCC--C
Q 007306 345 ISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSL--N 417 (608)
Q Consensus 345 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~ 417 (608)
++||++..-+....+..|...|.|+.++.-. +|++++.|+.|.|||.... ..++++.+|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 9999999999899999999999999998543 8999999999999998654 5668899999999999998877 6
Q ss_pred EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCC
Q 007306 418 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK 496 (608)
Q Consensus 418 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~ 496 (608)
.+++++.|+.|.+--.+........+-.+...++ ..+..++..|+.+++++ +.|..|+|||+.+|+..+.|++..
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k----tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK----TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR 638 (1080)
T ss_pred EEEeccCchhhheehhccccCceecccccccccc----ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc
Confidence 7999999988754332211000001111111122 47899999999999999 799999999999999999998753
Q ss_pred -CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcE
Q 007306 497 -MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 575 (608)
Q Consensus 497 -~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v 575 (608)
|.+....+...|.|.||++.+.|.++.++|..+|+++.... ||... |+.+.|.+ |.+.|++.+.||.|
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~---VTG~kF~n-DCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEA---VTGVKFLN-DCKHLISVSGDGCI 707 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchh---eeeeeecc-cchhheeecCCceE
Confidence 46788899999999999999999999999999999999887 55333 66999999 89999999999999
Q ss_pred EEEeCCC
Q 007306 576 HVIEPLE 582 (608)
Q Consensus 576 ~iW~~~~ 582 (608)
.||.+..
T Consensus 708 FvW~lp~ 714 (1080)
T KOG1408|consen 708 FVWKLPL 714 (1080)
T ss_pred EEEECch
Confidence 9999854
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.3e-29 Score=255.45 Aligned_cols=271 Identities=20% Similarity=0.221 Sum_probs=232.1
Q ss_pred CCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeeccc
Q 007306 221 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENV 300 (608)
Q Consensus 221 dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 300 (608)
.+.++++++.|++|++||... +......+.+ |.+.|++++|..-+.+|++|+.|.++++||..++.+
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~----~~~i~~~l~G--H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C------- 283 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNN----GYLILTRLVG--HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC------- 283 (537)
T ss_pred ecCeEEecCCCceeEEeeccc----ceEEEeeccC--CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE-------
Confidence 377899999999999999984 5554444644 999999999998888999999999999888766665
Q ss_pred ceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE
Q 007306 301 NMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 378 (608)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 378 (608)
...+. +|...|.++...+..+++|+ |.+|++|++.++.++..+.+|..+|.++..+ + .++
T Consensus 284 --------------~~~l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lv 345 (537)
T KOG0274|consen 284 --------------THSLQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLV 345 (537)
T ss_pred --------------EEEec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEE
Confidence 22222 79999999888888899999 9999999999999999999999999999988 5 999
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccce
Q 007306 379 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 458 (608)
Q Consensus 379 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 458 (608)
+|+.|++|++||+.++++++.+.+|..+|.++.+.+. ..+++|+.|++|++||+++.. +++. .+.+|. +-+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~----~c~~-tl~~h~---~~v 416 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR----KCIH-TLQGHT---SLV 416 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh----hhhh-hhcCCc---ccc
Confidence 9999999999999999999999999999999988765 889999999999999999942 4666 566776 455
Q ss_pred EEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 459 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 459 ~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
..+. ..+++|++ +.|++|++||..++++++++... |...|..+++. ...+++++.||.+++||+++++....+
T Consensus 417 ~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 417 SSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 4443 44678888 59999999999999999999764 56888888876 567889999999999999999988776
No 69
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.3e-30 Score=220.56 Aligned_cols=237 Identities=15% Similarity=0.175 Sum_probs=196.5
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCC-CceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc
Q 007306 323 PKDSISCFALR---GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 395 (608)
Q Consensus 323 ~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~ 395 (608)
-.+.+..++|+ .+.+++++ ||++++||+.. ..++..++.|...|.++.|++.. .+++++.|++|++|+..-++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 45778999999 66777777 99999999643 56788999999999999999977 88889999999999999999
Q ss_pred eEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE-E-
Q 007306 396 TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S- 472 (608)
Q Consensus 396 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~- 472 (608)
.+.++.+|...|...+|+| .++.+++++.|+++++||++... +.+. ...|. ..|.++.|+.-...++ +
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g----k~~~--i~ah~---~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG----KFMS--IEAHN---SEILCCDWSKYNHNVLATG 209 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC----ceeE--EEecc---ceeEeecccccCCcEEEec
Confidence 9999999999999999999 67899999999999999998732 2222 44666 6899999998665555 5
Q ss_pred EeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCc-eeEEEeceeeccCCCccc
Q 007306 473 IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE-LRCQINLTAYAQPGTISL 549 (608)
Q Consensus 473 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~~~~g~~~~ 549 (608)
+.|+.|++||+++.+ ++..+ .+|.-.|..+.|||.. ..|++++.|-+++|||...+. .+.+.. ||..
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--------~HtE 279 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--------HHTE 279 (311)
T ss_pred CCCceEEEEehhhccccceee--cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhh--------ccce
Confidence 489999999998765 45555 3579999999999865 678999999999999998554 233332 2343
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 550 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 550 ~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
. +..+.|++-++.++|+++.|+.++||++
T Consensus 280 F--v~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 280 F--VCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred E--EeccccccccCceeeecccccceeeecc
Confidence 3 4489999988999999999999999996
No 70
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.9e-29 Score=243.73 Aligned_cols=271 Identities=18% Similarity=0.225 Sum_probs=225.7
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
+++ ....++.|. ...|.+|+... +....+ ... +...|+++.|+++|.+|++|..+|.|.|||....+..
T Consensus 184 dWs-s~n~laVal-g~~vylW~~~s----~~v~~l--~~~-~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~-- 252 (484)
T KOG0305|consen 184 DWS-SANVLAVAL-GQSVYLWSASS----GSVTEL--CSF-GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT-- 252 (484)
T ss_pred hcc-cCCeEEEEe-cceEEEEecCC----CceEEe--Eec-CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--
Confidence 567 334444443 46799999984 443332 111 4789999999999999999999999999997666541
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeE-ecCCCCCeEEEEEcCC
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQ 374 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~ 374 (608)
+. +..+|...|-+++|.+..+.+|+ |+.|..+|+...+.... +.+|...|..+.|++|
T Consensus 253 -------------------~~-~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 253 -------------------RT-LRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred -------------------cc-ccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 11 11138999999999988999999 99999999988766555 8899999999999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC-CCCEEEEEc--CCCcEEEEECCCCceecccceeeeecc
Q 007306 375 D-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 375 ~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
+ ++|+|+.|+.+.|||.....++..+..|.+.|.+++|+| ....||+|+ .|+.|++||..++. .+..+..+
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-----~i~~vdtg 387 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-----RIDSVDTG 387 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-----EecccccC
Confidence 9 999999999999999988888999999999999999999 667888865 59999999999854 44434444
Q ss_pred CCCCccceEEEEEcCCCCEEEE--E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
+.|.++.|++..+.|++ | .++.|.||+..+.+.+..+.+ |...|..+++||||..+++|+.|.++++|++
T Consensus 388 -----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g--H~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 388 -----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG--HTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred -----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC--CcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 68999999999988887 4 678999999999888888864 7999999999999999999999999999999
Q ss_pred CCC
Q 007306 528 STL 530 (608)
Q Consensus 528 ~~~ 530 (608)
-..
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 775
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-29 Score=234.13 Aligned_cols=279 Identities=19% Similarity=0.251 Sum_probs=227.1
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
.+.|.+++|||...+=++....-.+.||+..+... .+... .....|.++.|. |++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~---------------------~k~~s--rFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSV---------------------RKTFS--RFKDVVYSVDFRSDGRL 82 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhh---------------------hhhHH--hhccceeEEEeecCCeE
Confidence 57899999999665433333344566665543332 22111 367889999999 778
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 413 (608)
+++|. .|.|+|+|+.+...++.+.+|..++..+.|+|++ .+++|++|+.+++||+.+......+.+|++.|+|.+|+
T Consensus 83 laaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred EEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccc
Confidence 88888 7999999988877889999999999999999988 89999999999999999998766899999999999999
Q ss_pred C-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeee
Q 007306 414 L-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 414 ~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~ 492 (608)
| ++.++++|+.||.|++||+++.. ..+. .-.|. .+|.++.+-|.|..++++..+.+++||+.+|...-..
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~----~~v~--elnhg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLT----SRVV--ELNHG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCC----ceeE--EecCC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 9 45689999999999999999832 2222 22344 5899999999999999988899999999866654443
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 572 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 572 (608)
.. .|...|+|+++..++..|++|+-|+.|++||+.+.+.+..+... ++ +.+++.+| |+..++.|..|
T Consensus 234 ~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------~p--vLsiavs~-dd~t~viGmsn 300 (487)
T KOG0310|consen 234 MF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------GP--VLSIAVSP-DDQTVVIGMSN 300 (487)
T ss_pred hh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---------cc--eeeEEecC-CCceEEEeccc
Confidence 33 37999999999999999999999999999999999998888653 22 56999999 78999999999
Q ss_pred CcEEEEeCCC
Q 007306 573 GRVHVIEPLE 582 (608)
Q Consensus 573 g~v~iW~~~~ 582 (608)
|.+.+=+...
T Consensus 301 Glv~~rr~~~ 310 (487)
T KOG0310|consen 301 GLVSIRRREV 310 (487)
T ss_pred ceeeeehhhc
Confidence 9988875443
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=5.1e-29 Score=216.86 Aligned_cols=271 Identities=16% Similarity=0.156 Sum_probs=216.5
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.+..+|..|.+++.|.++.+|-..++ ..+-. + .||++.|||+..+-+.+++++|+.|.++++||++++++.
T Consensus 16 iKyN~eGDLlFscaKD~~~~vw~s~nG---erlGt--y--~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l- 87 (327)
T KOG0643|consen 16 IKYNREGDLLFSCAKDSTPTVWYSLNG---ERLGT--Y--DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL- 87 (327)
T ss_pred EEecCCCcEEEEecCCCCceEEEecCC---ceeee--e--cCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE-
Confidence 579999999999999999999987542 23333 3 459999999999999999999999999999999888762
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeC------CcEEEEEcC-------CCceeeEec
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASG------GKISIFSLE-------TFQTLATFA 360 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d------~~i~vwd~~-------~~~~~~~~~ 360 (608)
..|+ ...+|..+.|+ |++++.+.| +.|.++|+. ..++...+.
T Consensus 88 ---------a~~k--------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 88 ---------ATWK--------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ---------EEee--------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 1233 55788999999 666666654 469999987 455677888
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCce
Q 007306 361 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 361 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
.+...++.+-|.|-+ .|++|..||.|..||+++|+. +..-+.|...|+.+.++||..++++++.|.+-++||..+.+
T Consensus 145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~- 223 (327)
T KOG0643|consen 145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE- 223 (327)
T ss_pred CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecccee-
Confidence 888999999999999 999999999999999999854 45556799999999999999999999999999999999943
Q ss_pred ecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eC-CcEEEEECCCC------------ceeeeecCCCCCCCeEE
Q 007306 439 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTL------------NHTSQLVPDKMDLPITY 503 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d-~~i~iwd~~~~------------~~~~~~~~~~~~~~v~~ 503 (608)
.++ .+... .+|++.+++|...+++.+ .+ ..|.-=+.+.| +.+..+. +|-++|.+
T Consensus 224 ----v~K-ty~te----~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPINs 292 (327)
T KOG0643|consen 224 ----VLK-TYTTE----RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPINS 292 (327)
T ss_pred ----eEE-Eeeec----ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCcce
Confidence 333 22222 479999999988777763 22 22322222233 2344444 47999999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 504 ATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 504 ~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
++|+|+|+..++|++||.|++...+.
T Consensus 293 vAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 293 VAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999986654
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.1e-28 Score=216.94 Aligned_cols=274 Identities=18% Similarity=0.189 Sum_probs=218.9
Q ss_pred EEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCC
Q 007306 274 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET 352 (608)
Q Consensus 274 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~ 352 (608)
+++|+....|.=+++..... ..-+..+..+.+......|.+++++++.++.++++|+ |.+|+|||+.+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~-----------~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k 72 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPK-----------GCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRK 72 (362)
T ss_pred EEEeeeeeEEEEEEeccCcc-----------ccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccc
Confidence 56666666655555433321 0111222233333334479999999999999999999 99999999999
Q ss_pred CceeeEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEE
Q 007306 353 FQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 429 (608)
Q Consensus 353 ~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 429 (608)
...+..+-.|.+.|+++.|.+.- .|++|+.||.|.+|+......+..+++|.+.|+.++.+|.+++.++.+.|+.++
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr 152 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLR 152 (362)
T ss_pred hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceee
Confidence 99999999999999999998876 899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 509 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 509 (608)
.||+-+++......+. ...+.+.|+|.|.+++++..+.|-+|.+.+......+.. ...+.++.|. +
T Consensus 153 ~WNLV~Gr~a~v~~L~----------~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~ 218 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLK----------NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN---PKRILCATFL-D 218 (362)
T ss_pred eehhhcCccceeeccC----------CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc---cccceeeeec-C
Confidence 9999887643333333 234469999999999998888999999988877766643 3556666664 5
Q ss_pred CCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEE--EecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 510 GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIA--AHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 510 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~--~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
+..|++|+.|+.|.+||..+..+...+.. | ...|. ++. -.| ++.+|+|+|.||.|+|||+...
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~A-------H-~~RVK--~i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLA-------H-ENRVK--DIASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeec-------c-hhhee--eeEEEecC-CceEEEEeccCceEEEEEcccc
Confidence 67899999999999999999888887763 3 44455 554 345 6789999999999999999876
No 74
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=250.69 Aligned_cols=242 Identities=14% Similarity=0.182 Sum_probs=201.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC----------------------------------------------
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET---------------------------------------------- 352 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~---------------------------------------------- 352 (608)
.|.+.|+++.|+ |+|||+|+ |+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 599999999999 99999999 99999998754
Q ss_pred --------------CceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC-CCC
Q 007306 353 --------------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLN 417 (608)
Q Consensus 353 --------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 417 (608)
.++++.+.+|.+.|..+.|+.+++|++++.|++|++|++...++++.|. |.+.|+|++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 0123455689999999999999999999999999999999999999997 999999999999 889
Q ss_pred EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC
Q 007306 418 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK 496 (608)
Q Consensus 418 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 496 (608)
++++|+-||.|++|++...+... ..+-+ .-|++++|.|||++.++| .+|.+++|+....+....+....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~------W~Dl~----~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVD------WNDLR----DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cEeecccccceEEeecCcCeeEe------ehhhh----hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999999999999998843332 23333 579999999999999996 89999999998777665554332
Q ss_pred C------CCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 497 M------DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 497 ~------~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
+ ...|+.+.|.|.. .-|++.+.|..|+|+|.....++..+.+. +...- -+...|+. ||.+|+++
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~-------~n~~S-Q~~Asfs~-Dgk~IVs~ 564 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF-------RNTSS-QISASFSS-DGKHIVSA 564 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc-------ccCCc-ceeeeEcc-CCCEEEEe
Confidence 2 3379999998644 35778889999999999998888888732 22211 23688999 89999999
Q ss_pred eCCCcEEEEeCCCC
Q 007306 570 LTNGRVHVIEPLES 583 (608)
Q Consensus 570 s~Dg~v~iW~~~~~ 583 (608)
++|..|+||+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998543
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.3e-29 Score=235.34 Aligned_cols=290 Identities=18% Similarity=0.192 Sum_probs=219.9
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCc-eeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSE-CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~-~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
..+-|.|-.+++|+.|.+|++||+.++...-. ++.+ .+. -...|.+++||+.|..|++.+.....+|+|-......
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~--E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~ 249 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPC--ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIV 249 (641)
T ss_pred eeecCCCceeeeccccceEEEEecccccccchhhhcc-Ccc--cccccceeeecCCCCeEEEEecCcceeEEccCCceee
Confidence 46889999999999999999999987543222 2222 222 4568999999999999999999999999987655431
Q ss_pred eeecccceeeEEeeCCCCe-eeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc-eeeEec-----CCC
Q 007306 295 LEEENVNMESQLYQPSSKL-VMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ-TLATFA-----NPP 363 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~-~~~~~~-----~~~ 363 (608)
-.. +..+ +.......||...++|.+|+ .+.+++++ ||++++||++..+ ..+.++ +..
T Consensus 250 e~~------------KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 250 EFS------------KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eee------------ccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 110 1111 11111122899999999999 55788888 9999999997643 333333 233
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEeeCccc--cEEEEEEeCCCCEEEEEcCCCcEEEEECCCCc
Q 007306 364 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 437 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 437 (608)
-.++.++|++|| .||+|..||+|.+|+..+.. ....-..|.. .|+||+|++||++|++-+.|+++++||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 467899999999 99999999999999975432 2233345776 89999999999999999999999999999854
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe-------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 510 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 510 (608)
+++.....-..+ .+-+.++|||+.++|++|. .+.+.+||..+...+..+... ...|..+.|+|.-
T Consensus 398 ----kpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 398 ----KPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHPKL 469 (641)
T ss_pred ----cchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecchh
Confidence 344311111111 3567899999999999842 357999999999998888664 7889999999999
Q ss_pred CEEEEEEcCCeEEEEeCC
Q 007306 511 KCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 511 ~~l~sg~~dg~i~iwd~~ 528 (608)
+.|++|+.||.++||--.
T Consensus 470 NQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 470 NQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred hheeeecCCCceEEEECc
Confidence 999999999999987544
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=3.1e-28 Score=248.32 Aligned_cols=276 Identities=17% Similarity=0.205 Sum_probs=231.7
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|...+.+..|. +.++++++.+++|++|+...+.. +...+ .||.+.|+++++. +.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~---------------------i~~~l-~GH~g~V~~l~~~~~~~ 262 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL---------------------ILTRL-VGHFGGVWGLAFPSGGD 262 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceE---------------------EEeec-cCCCCCceeEEEecCCC
Confidence 67788999998 45699999999999887655443 22211 1799999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
++++|+ |.++++||..+|++..++.+|...+.++...+. .+++|+.|.+|++|++.++..+..+.+|.++|+++..+
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD- 340 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-
Confidence 999999 999999999999999999999999998876444 78889999999999999999999999999999999997
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC-ceeeee
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQL 492 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~ 492 (608)
+.++++|+.|++|++||+.+ .+++. ...+|. ..|.++.+.+. ..+++ +.|++|++||+++. +++.++
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~-----~~cl~-sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRT-----GKCLK-SLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred -CCEEEEEecCceEEEEEhhh-----ceeee-eecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence 78999999999999999997 45666 666788 89999988876 67777 58999999999999 898888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 572 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 572 (608)
.. |..-+..+. ..+++|++++.|++|++||..+++.+..+... | ...+. .+++. ...+++++.|
T Consensus 410 ~~--h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~------~-~~~v~--~l~~~---~~~il~s~~~ 473 (537)
T KOG0274|consen 410 QG--HTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR------H-VGGVS--ALALG---KEEILCSSDD 473 (537)
T ss_pred cC--Ccccccccc--cccceeEeccccccEEEeecccCceeeeeccC------C-cccEE--EeecC---cceEEEEecC
Confidence 64 466664444 45789999999999999999999999988631 1 22233 55543 3689999999
Q ss_pred CcEEEEeCCCCccc
Q 007306 573 GRVHVIEPLESEVE 586 (608)
Q Consensus 573 g~v~iW~~~~~~~~ 586 (608)
|++++||+.++...
T Consensus 474 ~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 474 GSVKLWDLRSGTLI 487 (537)
T ss_pred CeeEEEecccCchh
Confidence 99999999998764
No 77
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.3e-27 Score=243.71 Aligned_cols=274 Identities=14% Similarity=0.134 Sum_probs=209.3
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeec-cccCCCCCCeEEEEEe---
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTN-DIAADPKDSISCFALR--- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~s--- 333 (608)
|-..|.....++++..+++++.+.....|+...+.. .++..+.|..... ....+|.+.|.+++|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-----------v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d 87 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-----------VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD 87 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceE-----------EeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence 445677777888877789999998888998765543 2333333432210 1112799999999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCC-------ceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCc
Q 007306 334 GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGH 403 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 403 (608)
+++|++|+ |++|++||+.++ ..+..+.+|...|.+++|+|++ .|++|+.|++|++||+.+++.+..+.+|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 57899999 999999999765 3567788999999999999986 8999999999999999999999999999
Q ss_pred cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E----eCCcE
Q 007306 404 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I----HEGQI 478 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~----~d~~i 478 (608)
...|.+++|+|+|.+|++++.|++|++||+++++ .+. ...+|.. ..+..+.|.+++..+++ | .|+.|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~-tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVS-SVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEE-EEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 9999999999999999999999999999999854 333 2345542 23456789998877776 4 36899
Q ss_pred EEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEE
Q 007306 479 DVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 479 ~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
++||+++.. ++..... .+...+....|++++++|++|+ .|+.|++||+.+++........ ...... .+
T Consensus 240 klWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-------s~~~~~--g~ 309 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-------SVEPHK--GL 309 (493)
T ss_pred EEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-------CCCCCc--ce
Confidence 999998754 3333322 2345566778999999999887 4999999999999876654321 122233 67
Q ss_pred EEec
Q 007306 557 AAHP 560 (608)
Q Consensus 557 ~~sp 560 (608)
+|.|
T Consensus 310 ~~~p 313 (493)
T PTZ00421 310 CMMP 313 (493)
T ss_pred Eecc
Confidence 7777
No 78
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.1e-29 Score=241.84 Aligned_cols=328 Identities=17% Similarity=0.188 Sum_probs=249.1
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCC-CCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINE-PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~-~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
-.|.+++|.+|+.||.|++|++..... +.+-...+++. |.+.|..++...+|+.|+++|.|-+|++|+...+..
T Consensus 33 da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~--HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~--- 107 (735)
T KOG0308|consen 33 DAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH--HSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT--- 107 (735)
T ss_pred cCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh--hHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---
Confidence 457788999999999999999875321 11111223444 999999999999999999999999999998765531
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc--eeeE--------ec-C
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--TLAT--------FA-N 361 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~--~~~~--------~~-~ 361 (608)
| ++.. .+.|++.|.|+++- ...+|+|+ |+.|.+||++++. .+.+ +. +
T Consensus 108 ----------~------c~st--ir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 108 ----------F------CMST--IRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred ----------h------hHhh--hhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 1 1111 11599999999994 66889999 9999999999872 2222 22 7
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec
Q 007306 362 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 440 (608)
Q Consensus 362 ~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 440 (608)
+...|++++.++.| .|++|+..+.+++||.++++.+..++||...|.++..++||+.+++++.||+|++||+..
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq----- 244 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ----- 244 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccc-----
Confidence 78899999999999 999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.+++. ....|. ..|.++..+|+-..+++ +.|+.|+.=|+++.. +...+. ...+|..+..+...+-+-+++.
T Consensus 245 QrCl~-T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTt 317 (735)
T KOG0308|consen 245 QRCLA-TYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTT 317 (735)
T ss_pred cceee-eEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCchhhhhhccccCCceeeec
Confidence 46666 355666 57999999999999999 499999999998843 333332 2677878887755555577788
Q ss_pred CCeEEEEeCCCCc-------eeEEEe-----------ceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 519 SGHVKVFDTSTLE-------LRCQIN-----------LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 519 dg~i~iwd~~~~~-------~~~~~~-----------~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
|+.|+-|...-.. .....+ .+.....| +..+ ...+.-. |.++++|-..+|.+.+||+
T Consensus 318 ds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai--~k~~mL~-dkRhVlTkDa~gnv~lwDI 392 (735)
T KOG0308|consen 318 DSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAI--KKHAMLN-DKRHVLTKDAKGNVALWDI 392 (735)
T ss_pred cccceecCCccccccccCCCCCcccccCCCccccccCCCceeccC--chhh--hhhhhhc-CcceEeeecCCCCEEEEEe
Confidence 9999999765321 111000 01111122 1112 2334444 6889999999999999999
Q ss_pred CCCcc
Q 007306 581 LESEV 585 (608)
Q Consensus 581 ~~~~~ 585 (608)
..++.
T Consensus 393 l~~~~ 397 (735)
T KOG0308|consen 393 LACVK 397 (735)
T ss_pred eeeee
Confidence 87653
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-27 Score=211.37 Aligned_cols=245 Identities=16% Similarity=0.187 Sum_probs=204.0
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCce
Q 007306 323 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 396 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~--d~~i~vwd~~~~~~ 396 (608)
....|+++.|+ |..+++++ |.++++||..++++++++..+...+..+.|.... .++.++. |.+|+..++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 46789999999 88999988 8899999999999999999988889888987766 5555554 88999999999999
Q ss_pred EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe-C
Q 007306 397 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH-E 475 (608)
Q Consensus 397 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~-d 475 (608)
++.|.||...|+++..+|-+..+++++.|++|++||++..+.... +... .-..++|+|.|-++|++. .
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-----l~~~------~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-----LNLS------GRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----EecC------CCcceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999997433221 1111 223678999999999964 4
Q ss_pred CcEEEEECCCC--ceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccc
Q 007306 476 GQIDVYEAPTL--NHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 552 (608)
Q Consensus 476 ~~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 552 (608)
+.|++||++.. .+..++... ........+.|||||++|+.++..+.+++.|.-+|....++.... ...-.
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~-------~~~~~ 234 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP-------NAGNL 234 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc-------CCCCc
Confidence 49999999864 455555543 236788999999999999999999999999999999888887432 22222
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 553 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 553 ~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
....+|+| |++++++|++||+|.+|+++++...
T Consensus 235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEe
Confidence 35789999 8999999999999999999998763
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.8e-27 Score=197.90 Aligned_cols=292 Identities=14% Similarity=0.118 Sum_probs=228.2
Q ss_pred cccCCCCceeEeecCCCCeEEEeecCCeEEEeeccCC----------CCCCceeeEeecCCCCCCcEEEEEEeeCCCEEE
Q 007306 206 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI----------NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV 275 (608)
Q Consensus 206 ~~~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~----------~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~ 275 (608)
.+.+....+++.|.|.|...+.|+...+.+|--.... +.++.....+- .-|.+.|.|.+|||+|++++
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~--khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN--KHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec--cccCccEEEEEecCccCeEE
Confidence 4455666667799999999999999999988643211 11112221111 22899999999999999999
Q ss_pred EEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe------CCEEEEEe--CCcEEE
Q 007306 276 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISI 347 (608)
Q Consensus 276 s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s------~~~l~s~~--d~~i~v 347 (608)
+|+.|.+|++.-++...+. .+|.-+... -|.+.|..++|- +.+|++++ |..|.+
T Consensus 106 tgsndk~ik~l~fn~dt~~---------------~~g~dle~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~ 167 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCN---------------ATGHDLEFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI 167 (350)
T ss_pred ecCCCceEEEEeccccccc---------------ccCcceeee---ecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence 9999999998765544331 112212211 389999999997 56788887 677888
Q ss_pred EEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-------ccccEEEEEEeCCCCEE
Q 007306 348 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVL 419 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l 419 (608)
-|..+|+..+.+.+|.+-|.++ ++-++ ++++|+.|.+|++||++-..++.++.. ..+.|.+++..|.|++|
T Consensus 168 tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll 246 (350)
T KOG0641|consen 168 TDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL 246 (350)
T ss_pred eecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence 8889999999999999998775 45567 999999999999999998888877642 23679999999999999
Q ss_pred EEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce---eeeecCC
Q 007306 420 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPD 495 (608)
Q Consensus 420 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~ 495 (608)
++|-.|....+||++.+ ++++ .+..|. ..|.++.|+|...++++ +.|..|++-|+. |.+ +......
T Consensus 247 ~sg~~dssc~lydirg~-----r~iq-~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ 316 (350)
T KOG0641|consen 247 ASGHADSSCMLYDIRGG-----RMIQ-RFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVA 316 (350)
T ss_pred eeccCCCceEEEEeeCC-----ceee-eeCCCc---cceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEE
Confidence 99999999999999984 4555 455666 79999999999999999 599999999985 322 2222234
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 496 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 496 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
.|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 317 ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 317 EHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 578999999999999999999999999999764
No 81
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=233.66 Aligned_cols=266 Identities=12% Similarity=0.113 Sum_probs=200.0
Q ss_pred EEeeCCCCe----eeeccccCCCCCCeEEEEEe-------------CCEEEEEe-CCcEEEEEcCCCceeeEe-------
Q 007306 305 QLYQPSSKL----VMTNDIAADPKDSISCFALR-------------GSHLFSAS-GGKISIFSLETFQTLATF------- 359 (608)
Q Consensus 305 ~~~~~~~~~----~~~~~~~~~~~~~v~~v~~s-------------~~~l~s~~-d~~i~vwd~~~~~~~~~~------- 359 (608)
.+||..... +...+ .|...|+.+.-- ...+++|+ |++|++||++.+..-..+
T Consensus 349 YvWDvrD~~kvgk~~s~l---yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~ 425 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSML---YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSA 425 (1080)
T ss_pred EEEeccccccccceeeee---eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchh
Confidence 577765433 22222 377777766532 24588898 999999998752111000
Q ss_pred ------------------------------cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEE
Q 007306 360 ------------------------------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 408 (608)
Q Consensus 360 ------------------------------~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 408 (608)
-....++.+++++|+| +|++|...|.++||++..-+....+..|...|.
T Consensus 426 ~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEil 505 (1080)
T KOG1408|consen 426 NLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEIL 505 (1080)
T ss_pred hhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeE
Confidence 0123468999999999 999999999999999999888888999999999
Q ss_pred EEEEeC---CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC--CEEEE-EeCCcEEEEE
Q 007306 409 CLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYE 482 (608)
Q Consensus 409 ~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~-~~d~~i~iwd 482 (608)
|+.|+. ..++|++++.|+-|.+||+... ...++ ...+|. ..|+++.|--+| ..+++ |.|..|.+--
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rn----y~l~q-tld~HS---ssITsvKFa~~gln~~MiscGADksimFr~ 577 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRN----YDLVQ-TLDGHS---SSITSVKFACNGLNRKMISCGADKSIMFRV 577 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEecccc----cchhh-hhcccc---cceeEEEEeecCCceEEEeccCchhhheeh
Confidence 999975 3478999999999999999762 23344 777888 799999998877 66666 6787765433
Q ss_pred CCCCceeeeecCCC---CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEe
Q 007306 483 APTLNHTSQLVPDK---MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 559 (608)
Q Consensus 483 ~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 559 (608)
.........+..+. ....++.++..|..+++++++.|..|+||++.+|+....|.. .+++.-..+.+...
T Consensus 578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-------s~~~eG~lIKv~lD 650 (1080)
T KOG1408|consen 578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-------SRDHEGDLIKVILD 650 (1080)
T ss_pred hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc-------cccCCCceEEEEEC
Confidence 32211111222111 156799999999999999999999999999999999998874 23333335578899
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007306 560 PLEPNRIALGLTNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~~~~~~~~~ 589 (608)
| .+.|+|+.+.|.++.++|..++|+....
T Consensus 651 P-SgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 651 P-SGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred C-CccEEEEeecCCceEEEEeccchhhhhh
Confidence 9 6999999999999999999999986544
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=195.96 Aligned_cols=303 Identities=14% Similarity=0.131 Sum_probs=222.3
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee-ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE-EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
....|.+++|+|.|.+.+.|+...+.+|-....-..... .......+.+ .+.+ ...|.+.|+|.+|+ |
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v------~~kr---~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSV------LCKR---NKHHKGSIYCTAWSPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeE------Eeee---ccccCccEEEEEecCcc
Confidence 377999999999999999999999988865422111000 0000000000 0111 12699999999999 9
Q ss_pred CEEEEEe-CCcEEEEEcCCCce-----eeEecCCCCCeEEEEEcCC----C-eEEEEe-CCCcEEEEeCCCCceEEEeeC
Q 007306 335 SHLFSAS-GGKISIFSLETFQT-----LATFANPPPIATYFILLPQ----D-LFAFGF-DDSSILVHCPCTKKTKAKLKG 402 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~-~l~~~~-~d~~i~vwd~~~~~~~~~~~~ 402 (608)
.++++|+ |.+|++.-.+...+ -..+.-|.+.|..++|-.+ + .|++++ .|..|++-|...|+..+.+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999 99999987654332 2346678999999999543 2 566554 567899999999999999999
Q ss_pred ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEE
Q 007306 403 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 481 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iw 481 (608)
|.+.|.++ ++-+|-++++|+.|.+|++||++-..... .+.+.+.+..-..+.|.+++..|.|++|++| .|.+..+|
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~--~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN--TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceee--eccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 99999887 44468899999999999999998743322 1111111111112579999999999999997 88999999
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecC
Q 007306 482 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 561 (608)
Q Consensus 482 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 561 (608)
|++.++.++.|.. |...|.++.|||...|+++++.|..|++-|+... +...+.. .+...|.+. ++.+.|+|+
T Consensus 259 dirg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~--~vv~ehkdk---~i~~rwh~~ 330 (350)
T KOG0641|consen 259 DIRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPI--MVVAEHKDK---AIQCRWHPQ 330 (350)
T ss_pred EeeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCce--EEEEeccCc---eEEEEecCc
Confidence 9999999999965 6999999999999999999999999999998742 2222211 011123233 457899995
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 007306 562 EPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 562 d~~~las~s~Dg~v~iW~~~ 581 (608)
.--+++.+.|.++.+|-+.
T Consensus 331 -d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 331 -DFSFISSSADKTATLWALN 349 (350)
T ss_pred -cceeeeccCcceEEEeccC
Confidence 5678888999999999764
No 83
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-28 Score=210.94 Aligned_cols=261 Identities=15% Similarity=0.212 Sum_probs=213.0
Q ss_pred cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCC-CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEee
Q 007306 230 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQ 308 (608)
Q Consensus 230 ~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (608)
..|.+.|-++.+...-.++..+. -.+.+..++|+++. +.+++++.||+++|||...... .+..|.
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d-----~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---------Pi~~~k 101 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD-----TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---------PIHKFK 101 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee-----cccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------chhHHH
Confidence 46889999997544455666653 47899999999854 5788999999999999543321 111222
Q ss_pred CCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeC
Q 007306 309 PSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFD 382 (608)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~ 382 (608)
.|...|.++.|+ ...+++++ |++|++|+...++.++++.+|...|....|+|.. .+++++.
T Consensus 102 -------------EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 102 -------------EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred -------------hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 599999999999 66788889 9999999999999999999999999999999987 9999999
Q ss_pred CCcEEEEeCCCCceEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEE
Q 007306 383 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 461 (608)
Q Consensus 383 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 461 (608)
|+++++||++..-....+..|...|.|+.|+. +.+.+++|+.|+.|+.||+++-+ .++. ...+|. -.|+.+
T Consensus 169 d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~-eL~gh~---~AVRkv 240 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLF-ELNGHG---LAVRKV 240 (311)
T ss_pred CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccce-eecCCc---eEEEEE
Confidence 99999999987544444888999999999988 67889999999999999999843 4555 457887 799999
Q ss_pred EEcCCCCEEE-E-EeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEeC
Q 007306 462 QFHPDQIHLL-S-IHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 462 ~~sp~~~~l~-~-~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~ 527 (608)
.|||...-++ + +.|=+++|||...+. .+.++. .|...+..+.||+ ++.++|+.+.|+.++||+.
T Consensus 241 k~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 241 KFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 9999865544 4 589999999987544 444443 4789999999996 6779999999999999984
No 84
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=7.4e-27 Score=238.24 Aligned_cols=286 Identities=11% Similarity=0.069 Sum_probs=209.0
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCC------CCCceee--EeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEe
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLIN------EPSECRT--LLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWK 287 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~------~~~~~~~--~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~ 287 (608)
..++|+..+++++.+.....|+..++. ..+.... ..+ .||.+.|++++|+| ++++|++|+.|++|++||
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l--~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL--LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE--eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 467777777777777777777754311 0111010 113 35999999999999 889999999999999999
Q ss_pred cCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCC
Q 007306 288 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPP 363 (608)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 363 (608)
+.++.... . ....+.. ..+|...|.+++|+ +++|++++ |++|++||+.+++.+..+.+|.
T Consensus 105 i~~~~~~~------------~--~~~~l~~--L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~ 168 (493)
T PTZ00421 105 IPEEGLTQ------------N--ISDPIVH--LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS 168 (493)
T ss_pred cCCCcccc------------c--cCcceEE--ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC
Confidence 87653200 0 0011111 11699999999999 36899999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcccc-EEEEEEeCCCCEEEEEc----CCCcEEEEECCCCc
Q 007306 364 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSG----ADAQLCVWDAVGWK 437 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~----~d~~i~vwd~~~~~ 437 (608)
..|.+++|+|++ .|++|+.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++..
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999999999 9999999999999999999999999888764 45678999888877654 47999999998743
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 515 (608)
.++........ ..+....|++++.++++ + .|+.|++||+.+++.+..... .+..++..++|.|.-..=+
T Consensus 249 ----~p~~~~~~d~~---~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~~~dv- 319 (493)
T PTZ00421 249 ----SPYSTVDLDQS---SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKWSLDT- 319 (493)
T ss_pred ----CceeEeccCCC---CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccccccc-
Confidence 23331111222 35666789999999888 5 499999999999887766543 2466788888887532211
Q ss_pred EEcCCeEEEEeCCCC
Q 007306 516 SCKSGHVKVFDTSTL 530 (608)
Q Consensus 516 g~~dg~i~iwd~~~~ 530 (608)
..--..++|.+...
T Consensus 320 -~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 320 -RKCEIARFYALTYH 333 (493)
T ss_pred -cceeeeEEEEecCC
Confidence 11123466666543
No 85
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=5.6e-28 Score=214.55 Aligned_cols=286 Identities=12% Similarity=0.167 Sum_probs=224.7
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCC-------------CCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLIN-------------EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT 280 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~-------------~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d 280 (608)
++..|||||.++|+|+.|..|+|.|++-+. ........+|-+ |.++|+++.|+|....|++|+.|
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--H~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--HVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--ccCcccceeecchhheEEeccCC
Confidence 345799999999999999999999987210 001011122433 99999999999999999999999
Q ss_pred CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceee
Q 007306 281 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLA 357 (608)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~ 357 (608)
++|+++|......... .+. + ....+|.++.|+ |.+|+.|. ..++++||+++.++..
T Consensus 194 ~tvKlFDfsK~saKrA------------------~K~-~--qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAKRA------------------FKV-F--QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV 252 (430)
T ss_pred CeEEEEecccHHHHHH------------------HHH-h--hccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence 9999999765432100 000 1 245789999999 89999999 6899999999998876
Q ss_pred Eec---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-cc-ccEEEEEEeCCCCEEEEEcCCCcEEEE
Q 007306 358 TFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQ-NRITCLAYSLSLNVLVSSGADAQLCVW 431 (608)
Q Consensus 358 ~~~---~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~-~~v~~~~~~~~~~~l~s~~~d~~i~vw 431 (608)
.-. .|.+.|+++.+++.+ +.++|+.||.|++||--+++++.++.. |. ..|.+..|..+|+++++.+.|..+++|
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeee
Confidence 654 688999999999999 999999999999999988999988754 54 578899999999999999999999999
Q ss_pred ECCCCceecccceeeeecc-CCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 432 DAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 432 d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
.+.+++ ++...... ......--+...|+....+++.- ..+.+.-||.+++..+..+.. +|++.+..+.-||
T Consensus 333 Ei~t~R-----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP 406 (430)
T KOG0640|consen 333 EISTGR-----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSP 406 (430)
T ss_pred eecCCc-----eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCC
Confidence 999954 34322111 11000122345678888888873 668899999999887766655 6899999999999
Q ss_pred CCCEEEEEEcCCeEEEEeCC
Q 007306 509 DGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iwd~~ 528 (608)
.+.-+++++.|-.+++|--.
T Consensus 407 ~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 407 VEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCCceeeecccceeeeeeec
Confidence 99999999999999999754
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=226.75 Aligned_cols=275 Identities=15% Similarity=0.124 Sum_probs=222.9
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.|-++...|++|+.|..|++|++...+ .+... +|.+ ..++|+++.|.++++++++++.|+.+++|++.....
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~-tLaG--s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~- 253 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEK--SELIS-TLAG--SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL- 253 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccch--hhhhh-hhhc--cCCCcceeeecCCCceEEeecCCCceeeeeccchhh-
Confidence 44799999999999999999999997532 11221 2433 678999999999999999999999999998766543
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CC-EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
+..+. ||++.|+++.|. +. .+++|+ |.+|++||+....|.+++-. ...+..|..
T Consensus 254 --------------------~~TLs--GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~ 310 (459)
T KOG0288|consen 254 --------------------RHTLS--GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVC 310 (459)
T ss_pred --------------------hhhhc--ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEe
Confidence 22111 799999999999 54 499999 99999999999888877653 233444544
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
+ . .+++|..|+.|++||.++..+......+. .|+++..+++|..+.+.+.|.++.+.|+++.+......-..+..+
T Consensus 311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a 387 (459)
T KOG0288|consen 311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA 387 (459)
T ss_pred c--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc
Confidence 4 5 78999999999999999999998888665 899999999999999999999999999998543222111112223
Q ss_pred CCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
...+.+.|||++.|+++ |.||.|+||++.++++...+........|++++|+|.|..+++++.++.+.+|.
T Consensus 388 -----sDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 388 -----SDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -----cccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 34788999999999999 599999999999999988887754344799999999999999999999999993
No 87
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=3e-27 Score=235.88 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=243.6
Q ss_pred CCceeEeecCCCCe-EEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 007306 211 NQSRESTSLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 289 (608)
Q Consensus 211 ~~~~~~~~s~dg~~-l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~ 289 (608)
.....++|..||.. +|+|+..|.+-+||++. ........ ..|.+.|....|-|....+++++.|+.+++|-.+
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~----kkl~~v~~--nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK----KKLINVTR--NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCC----Ceeeeeee--ccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 34445689999985 56677789999999985 33333222 2389999999999999999999999999999554
Q ss_pred CCcceee-------ecccceeeEEeeCCCCeeeec------------------cccCCC-----------------CCCe
Q 007306 290 SNKQSLE-------EENVNMESQLYQPSSKLVMTN------------------DIAADP-----------------KDSI 327 (608)
Q Consensus 290 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~-----------------~~~v 327 (608)
++.-... +......++.|..+.-.++.. .+...| -.+|
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 3322100 111111122222211111100 000000 0123
Q ss_pred EEEEEe------CCEEEEEe--CCcEEEEEcCCCce-eeEec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC
Q 007306 328 SCFALR------GSHLFSAS--GGKISIFSLETFQT-LATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC 392 (608)
Q Consensus 328 ~~v~~s------~~~l~s~~--d~~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~ 392 (608)
..+++. -.-++++. +..++.|+...... ...+. .....+++++.++.| ..+.|+..|.|-+|+++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 333333 01122222 34555555544332 11221 233678899999999 99999999999999999
Q ss_pred CCceEEEe---eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCE
Q 007306 393 TKKTKAKL---KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 393 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
+|-....| ..|..+|+.++...-++.+++++.+|-+.+||..+.. .+.++.-+ ..+..+..+.....
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-----l~~~l~l~-----~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-----LKKSLRLG-----SSITGIVYHRVSDL 548 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-----eeeeeccC-----CCcceeeeeehhhh
Confidence 99888888 4799999999999989999999999999999998833 22323333 46788888888777
Q ss_pred EEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcc
Q 007306 470 LLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 548 (608)
Q Consensus 470 l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~ 548 (608)
++. ..|-.|+++|+.+.+.++.|.+ |.+.|++++|||||+||++++.|++|++||+.++.++-.+.. +
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---------d 617 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---------D 617 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---------C
Confidence 877 5788999999999999999975 699999999999999999999999999999999999887753 2
Q ss_pred cccccEEEEEecCCCCEEEEEeCC-CcEEEEeCC
Q 007306 549 LELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPL 581 (608)
Q Consensus 549 ~~v~~~~v~~sp~d~~~las~s~D-g~v~iW~~~ 581 (608)
..++.+.|+| +|++|||...| .-|++|.-.
T Consensus 618 --~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 618 --SPCTSLSFSP-NGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred --CcceeeEECC-CCCEEEEEEecCceEEEEEch
Confidence 2256999999 89999999988 679999753
No 88
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.1e-29 Score=224.15 Aligned_cols=281 Identities=11% Similarity=0.140 Sum_probs=218.5
Q ss_pred CCCCCcEEEEEEeeCC-CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeC
Q 007306 256 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG 334 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 334 (608)
.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+ +|.. ..|.+.|..+++..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~------------~~~f-----------~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC------------IRTF-----------KAHEGLVRGICVTQ 119 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhh------------hhee-----------ecccCceeeEEecc
Confidence 4599999999999977 7799999999999999877665 1111 16999999999994
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 412 (608)
..+++++ |.+|+.|.++. .+++++.+ ...+..+.-+..+ .+++||. .|.|||..-..+++.+.-....|.++.|
T Consensus 120 ~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 120 TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEec
Confidence 4455555 99999999874 46666653 3345556655556 7888875 5899999888899988877888999999
Q ss_pred eCCC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCc-ee
Q 007306 413 SLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN-HT 489 (608)
Q Consensus 413 ~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~-~~ 489 (608)
+|.. ..|+++.+|+.|.+||++.... ++.+..+ ..-+.|+|+|.+-.++++ .|..++.||++... ++
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~P-----l~KVi~~-----mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASP-----LKKVILT-----MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL 265 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCc-----cceeeee-----ccccceecCccccceeeccccccceehhhhhhcccc
Confidence 9954 5677888999999999999554 3322222 345689999966555554 88999999998654 44
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
..+. +|...|.++.|||.|+-+++||.|.+|+||....+.....+... .-..|.+|.||. |..++++|
T Consensus 266 ~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk---------RMq~V~~Vk~S~-Dskyi~SG 333 (433)
T KOG0268|consen 266 NVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK---------RMQHVFCVKYSM-DSKYIISG 333 (433)
T ss_pred hhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh---------hhheeeEEEEec-cccEEEec
Confidence 5554 47899999999999999999999999999999987755444221 112266999999 89999999
Q ss_pred eCCCcEEEEeCCCCcc
Q 007306 570 LTNGRVHVIEPLESEV 585 (608)
Q Consensus 570 s~Dg~v~iW~~~~~~~ 585 (608)
|+|+.|++|.....+.
T Consensus 334 Sdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 334 SDDGNVRLWKAKASEK 349 (433)
T ss_pred CCCcceeeeecchhhh
Confidence 9999999999876554
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=207.52 Aligned_cols=245 Identities=15% Similarity=0.185 Sum_probs=209.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeE--ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 394 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~ 394 (608)
+|...|.+|+|+ |..|++|+ |+++.+|+++..+.... .++|.+.|-.++|+|.. .+++++.|.+|++||++.+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 688999999999 99999999 99999999987755443 45888899999999987 9999999999999999999
Q ss_pred ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E
Q 007306 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 473 (608)
Q Consensus 395 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~ 473 (608)
+++......... .-+.|+|+|.+++.++.|..|.+.|.++.+........ ..+..++|+.++.+++. .
T Consensus 98 k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----------~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 98 KCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----------FEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred cEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----------ceeeeeeecCCCCEEEEec
Confidence 999888754443 45689999999999999999999999985443332222 46788999977777766 5
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccccc
Q 007306 474 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 553 (608)
..|+|.|......+++.++.. |.....++.|+|+|+++|+|+.|..+.+||++.--+...+... +-+|+
T Consensus 167 GlG~v~ILsypsLkpv~si~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--------dwpVR- 235 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--------DWPVR- 235 (313)
T ss_pred CCceEEEEecccccccccccc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--------cCceE-
Confidence 679999999999999999975 6899999999999999999999999999999987777776643 44555
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 554 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
.++||. ||.+||+||.|..|-|=++.+|+..|..+
T Consensus 236 -TlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 236 -TLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred -EEEecc-CcceeeccCccceEEeEecccCCeEEEee
Confidence 899999 89999999999999999999999888664
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.7e-27 Score=220.42 Aligned_cols=271 Identities=15% Similarity=0.189 Sum_probs=215.3
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCcee-----------eEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR-----------TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 282 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~-----------~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~ 282 (608)
+.+.++||+++..+++.||+|.-|++..++....+. .......+|...|.+++.||||+|||+|+.|..
T Consensus 146 ~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~ 225 (479)
T KOG0299|consen 146 TSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRH 225 (479)
T ss_pred eEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCce
Confidence 345799999999999999999999998654221111 111111269999999999999999999999999
Q ss_pred EEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEe
Q 007306 283 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 359 (608)
Q Consensus 283 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~ 359 (608)
|.||+..+.+. ++. + .+|.+.|.+++|- .+.+++++ |..|++|+++....+.++
T Consensus 226 v~Iw~~~t~eh---------------------v~~-~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 226 VQIWDCDTLEH---------------------VKV-F-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred EEEecCcccch---------------------hhc-c-cccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 99998877664 111 1 1799999999999 55788888 999999999999999999
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCce
Q 007306 360 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 360 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
-+|...|..+....-+ .+-+|+.|+++++|++. .+....+.++.+.+.|++|-. ...+++|+.||.|.+|++.+.+
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKk- 359 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKK- 359 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccC-
Confidence 9999999999888877 77778899999999994 344556888999999999985 4578999999999999998743
Q ss_pred ecccceeeeeccCCCCc--------cceEEEEEcCCCCEEEEE-eCCcEEEEECCCC----ceeeeecCCCCCCCeEEEE
Q 007306 439 LCSKFLHSFQTGLVPET--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL----NHTSQLVPDKMDLPITYAT 505 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~--------~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~ 505 (608)
++.+....|.-.. .+|++++..|...++++| .+|.|++|-+..+ +++..+. -.+.|++++
T Consensus 360 ----plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~ 432 (479)
T KOG0299|consen 360 ----PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLA 432 (479)
T ss_pred ----ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEE
Confidence 3333332332110 389999999999999995 8999999999876 3444554 278999999
Q ss_pred EecCCCEEEEEE
Q 007306 506 YSCDGKCIYVSC 517 (608)
Q Consensus 506 ~s~~~~~l~sg~ 517 (608)
|+++|++|++|-
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999777763
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-27 Score=230.41 Aligned_cols=273 Identities=17% Similarity=0.225 Sum_probs=223.0
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEE
Q 007306 262 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 339 (608)
Q Consensus 262 V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s 339 (608)
..-+.||..+ .||.|. ...|.+|+..++. .....- -+...|+++.|+ |.+|++
T Consensus 180 ~nlldWss~n-~laVal-g~~vylW~~~s~~---------------------v~~l~~--~~~~~vtSv~ws~~G~~Lav 234 (484)
T KOG0305|consen 180 LNLLDWSSAN-VLAVAL-GQSVYLWSASSGS---------------------VTELCS--FGEELVTSVKWSPDGSHLAV 234 (484)
T ss_pred hhHhhcccCC-eEEEEe-cceEEEEecCCCc---------------------eEEeEe--cCCCceEEEEECCCCCEEEE
Confidence 3446788444 455543 3467766655544 222111 137889999999 999999
Q ss_pred Ee-CCcEEEEEcCCCceeeEecC-CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEE-eeCccccEEEEEEeCCC
Q 007306 340 AS-GGKISIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSL 416 (608)
Q Consensus 340 ~~-d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~ 416 (608)
|. +|.|.|||..+.+.+..+.+ |...|.+++|... .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+
T Consensus 235 G~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~ 313 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG 313 (484)
T ss_pred eecCCeEEEEehhhccccccccCCcCceeEEEeccCc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC
Confidence 99 99999999999999999998 9999999999822 899999999999999998765544 88899999999999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC-CEEEEE---eCCcEEEEECCCCceeeee
Q 007306 417 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI---HEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 417 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~~---~d~~i~iwd~~~~~~~~~~ 492 (608)
.++|+|+.|+.+.|||... ..+.. .+..|. +.|..++|+|-. ..||+| .|+.|++||..+++.+..+
T Consensus 314 ~~lASGgnDN~~~Iwd~~~-----~~p~~-~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLS-----PEPKF-TFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV 384 (484)
T ss_pred CeeccCCCccceEeccCCC-----ccccE-EEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence 9999999999999999965 23444 466777 799999999975 556663 7999999999999999888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEE--EEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 493 VPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~s--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.. ...|.++.|++..+-|++ |..++.|.||+..+.+.+..+. || .. .|..++++| |+..+++|+
T Consensus 385 dt---gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~-------gH-~~--RVl~la~SP-dg~~i~t~a 450 (484)
T KOG0305|consen 385 DT---GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL-------GH-TS--RVLYLALSP-DGETIVTGA 450 (484)
T ss_pred cc---CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec-------CC-cc--eeEEEEECC-CCCEEEEec
Confidence 54 788999999999876665 4557899999999988888776 44 33 366999999 899999999
Q ss_pred CCCcEEEEeCCCC
Q 007306 571 TNGRVHVIEPLES 583 (608)
Q Consensus 571 ~Dg~v~iW~~~~~ 583 (608)
.|.++++|++-+.
T Consensus 451 ~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 451 ADETLRFWNLFDE 463 (484)
T ss_pred ccCcEEeccccCC
Confidence 9999999999875
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=8.8e-27 Score=216.04 Aligned_cols=271 Identities=14% Similarity=0.196 Sum_probs=223.4
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
...|....+.+|+.|.++.++|... .++.. ++++ |...|+.+.|+|+...+++++.|..|+||.......
T Consensus 226 d~~~s~~~ilTGG~d~~av~~d~~s----~q~l~-~~~G--h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--- 295 (506)
T KOG0289|consen 226 DIIPSSSKILTGGEDKTAVLFDKPS----NQILA-TLKG--HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--- 295 (506)
T ss_pred eecCCCCcceecCCCCceEEEecch----hhhhh-hccC--cceEEEEEEeccchhheeecCCcceEEeeccccccC---
Confidence 4556667899999999999999873 34433 2544 999999999999999999999999999998754432
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecC--CCCCeEEEEE
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFIL 371 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~ 371 (608)
.... ..|..+|+.+..+ |.||++++ |++..+.|+.+|.++..... ..-.+++.+|
T Consensus 296 ---------------~~~~-----~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 296 ---------------PTSS-----RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred ---------------cccc-----ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 0111 1599999999998 99999999 99999999999998877654 2345799999
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
+||| .|.+|..|+.|++||+.++..+..|.+|.++|..++|+.+|.+|++++.|+.|++||++..+ .++++...
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~-----n~kt~~l~ 430 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK-----NFKTIQLD 430 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc-----ccceeecc
Confidence 9999 99999999999999999999999999999999999999999999999999999999999843 33333332
Q ss_pred CCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCC--CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
.. .++.++.|.+.|++|++ |.+=+|++++-.+ ..++..+. .|.+..+.+.|....+++++++.|..++++.+
T Consensus 431 ~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 431 EK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence 22 46999999999999999 4666677777443 44555553 46788999999999999999999999888764
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.3e-27 Score=219.37 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=230.5
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCC---CCeeeecccc-CCCCCCeEEEEEe
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS---SKLVMTNDIA-ADPKDSISCFALR 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~v~~v~~s 333 (608)
|.-+|.+|+++|++++.++++.+|+|.=|++.++..... +|... .......... .+|...+.+++.+
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~---------i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRY---------IIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCccccc---------ccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 899999999999999999999999999999988874211 22221 0011111111 1689999999999
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 334 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
|++|++|+ |..|.||+..+.+.++.+.+|.+.|.+++|-... .+++++.|++|++|+++....+.++-+|++.|.+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG 291 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee
Confidence 99999999 9999999999999999999999999999998877 9999999999999999998889999999999999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCcee
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHT 489 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~ 489 (608)
+....-++.+-+|+.|+++++|++... .+-++.++. +.+-+++|-.+..++..+.+|.|.+|++.+.+++
T Consensus 292 IdaL~reR~vtVGgrDrT~rlwKi~ee-------sqlifrg~~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRTVRLWKIPEE-------SQLIFRGGE---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred echhcccceEEeccccceeEEEecccc-------ceeeeeCCC---CCeeeEEEecccceeeccCCceEEEeeecccCce
Confidence 988877887878889999999999542 222455665 6899999987654444468999999999998888
Q ss_pred eeecCCCC----------CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCce----eEEEeceeeccCCCcccccccEE
Q 007306 490 SQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL----RCQINLTAYAQPGTISLELYPLV 555 (608)
Q Consensus 490 ~~~~~~~~----------~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~----~~~~~~~~~~~~g~~~~~v~~~~ 555 (608)
.+.....+ ..+|++++..|...++++|+.+|.|++|.+..+-. +..+.. . -+|++
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---------~--GfVNs 430 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---------V--GFVNS 430 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---------c--cEEEE
Confidence 77654321 22899999999999999999999999999998832 222221 2 23559
Q ss_pred EEEecCCCC-EEEEEeCCCcEEEEeC
Q 007306 556 IAAHPLEPN-RIALGLTNGRVHVIEP 580 (608)
Q Consensus 556 v~~sp~d~~-~las~s~Dg~v~iW~~ 580 (608)
++|++ ++. ++|..+....+-=|-.
T Consensus 431 l~f~~-sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 431 LAFSN-SGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred EEEcc-CCCEEEEecccccccceeeE
Confidence 99999 576 5555555555544544
No 94
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-27 Score=209.34 Aligned_cols=288 Identities=14% Similarity=0.142 Sum_probs=235.6
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.||.+.||.++-......+.+++.|.+.+||.++++.++.. | . ||.+.|++++|+
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~----------Y-----------~--GH~GSVNsikfh~s 201 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT----------Y-----------T--GHTGSVNSIKFHNS 201 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceee----------e-----------c--ccccceeeEEeccc
Confidence 35999999999988888899999999999998888776221 1 1 799999999999
Q ss_pred CCEEEEEe-CCcEEEEEc------CC----------------------------------CceeeEecCCCCCeEEEEEc
Q 007306 334 GSHLFSAS-GGKISIFSL------ET----------------------------------FQTLATFANPPPIATYFILL 372 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~ 372 (608)
+.++++++ |++..||.. .. ..++..+.+|...|.+..|.
T Consensus 202 ~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL 281 (481)
T KOG0300|consen 202 GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWL 281 (481)
T ss_pred cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhh
Confidence 77889999 999999962 10 01345667899999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC
Q 007306 373 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 373 ~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
..| .+++++.|.+..+||+++|+++..+.||....+.++-+|..+++++.+.|.+.++||++.. ...+. ++.||
T Consensus 282 ~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea----I~sV~-VFQGH 356 (481)
T KOG0300|consen 282 AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA----IQSVA-VFQGH 356 (481)
T ss_pred cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh----cceee-eeccc
Confidence 999 9999999999999999999999999999999999999999999999999999999999851 23344 78899
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 452 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
. ..|+++.|..+.+.+-.+.|.+|++||+++.+ ++.++.. ..++..++.+..+..|+.--.+..|++||+...
T Consensus 357 t---dtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRt---dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 357 T---DTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRT---DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred c---cceeEEEEecCCceeecCCCceEEEeeeccccCcceeeec---CCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 9 79999999988765555688999999998765 5667754 788999999999999999988999999999865
Q ss_pred ceeEEEeceeeccCCCcccccccEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCc
Q 007306 531 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEP--NRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 531 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~--~~las~s~Dg~v~iW~~~~~~ 584 (608)
+ +..++.. ...|| .--+.|++|.. +. .-|.+|+-|..+.-|++..+.
T Consensus 431 R-laRlPrt--sRqgH---rRMV~c~AW~e-ehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 431 R-LARLPRT--SRQGH---RRMVTCCAWLE-EHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred c-cccCCcc--ccccc---ceeeeeeeccc-cCcccccccccccceeeeeEecccC
Confidence 4 3443321 11144 33366999985 32 468899999999999997653
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.3e-28 Score=218.70 Aligned_cols=274 Identities=15% Similarity=0.174 Sum_probs=217.3
Q ss_pred ecCCC-CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 218 SLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 218 ~s~dg-~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
-.|.. ..+++|+.||.|+|||+.. ..|.. ++.. |.+.|..+++.. ..++++|.|.+|+.|..+....
T Consensus 74 khp~~ls~~aSGs~DG~VkiWnlsq----R~~~~-~f~A--H~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~--- 141 (433)
T KOG0268|consen 74 KHPNKLSTVASGSCDGEVKIWNLSQ----RECIR-TFKA--HEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPL--- 141 (433)
T ss_pred cCcchhhhhhccccCceEEEEehhh----hhhhh-eeec--ccCceeeEEecc--cceEEecCCcceeeeeccCCcc---
Confidence 33444 4689999999999999984 44433 2544 999999999987 5689999999999997654311
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCC
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ 374 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 374 (608)
+.+. -...+..+.-+ ++.++||+ ..|.|||.....+++.+.-....|.++.|+|.
T Consensus 142 --------~til--------------g~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~Dti~svkfNpv 198 (433)
T KOG0268|consen 142 --------HTIL--------------GKSVYLGIDHHRKNSVFATCG-EQIDIWDEQRDNPVSSMSWGADSISSVKFNPV 198 (433)
T ss_pred --------eeee--------------ccccccccccccccccccccC-ceeeecccccCCccceeecCCCceeEEecCCC
Confidence 1111 23445555555 44455444 46899999999999999888888999999998
Q ss_pred C--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC
Q 007306 375 D--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 452 (608)
Q Consensus 375 ~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 452 (608)
. .|++|+.|++|.+||++++.+++.+. -...-+.|+|+|.+-.+++|+.|..++.||++..+ .++. ...+|.
T Consensus 199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~----~p~~-v~~dhv 272 (433)
T KOG0268|consen 199 ETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS----RPLN-VHKDHV 272 (433)
T ss_pred cchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc----ccch-hhcccc
Confidence 8 88889899999999999999887665 34556789999988889999999999999998743 5666 667887
Q ss_pred CCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 453 PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 453 ~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
+.|.++.|||.|+.+++ +.|.+|+||.++.+.....+... .-..|.++.||.|.+|+++||.|+.|++|.....+
T Consensus 273 ---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 273 ---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 79999999999999999 69999999999887765554332 25679999999999999999999999999987655
Q ss_pred eeEEE
Q 007306 532 LRCQI 536 (608)
Q Consensus 532 ~~~~~ 536 (608)
.+..+
T Consensus 349 klgv~ 353 (433)
T KOG0268|consen 349 KLGVI 353 (433)
T ss_pred hcCCC
Confidence 44443
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=8.9e-27 Score=228.09 Aligned_cols=274 Identities=15% Similarity=0.182 Sum_probs=226.1
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEE-EEEe-
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~s- 333 (608)
.||...|..+++.+.. .++++|.||++++|+-...+. +......+|.+-|.+ ++|.
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~~~~g~i~~~i~y~e 68 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFEGPKGFIANSICYAE 68 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecccCcceeeccceecc
Confidence 4599999999877665 689999999999887644433 111111146666665 6665
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 334 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
+..+++|+ |..|.+|......++..+++|...|.|++...++.+++|+.|.++++|-. +++...+.+|+..|.++
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeee
Confidence 45688888 99999999999999999999999999998877778899999999999975 56777799999999999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceee
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~ 490 (608)
+.-|++ .+++|+.|++|++|.-.+ .++ .+.+|. .-|+.+++-+++.++-++.||.|+.|++ +|+++.
T Consensus 147 ~~l~e~-~~vTgsaDKtIklWk~~~-------~l~-tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 147 ASLPEN-TYVTGSADKTIKLWKGGT-------LLK-TFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLL 213 (745)
T ss_pred eecCCC-cEEeccCcceeeeccCCc-------hhh-hhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCceee
Confidence 999988 789999999999997643 555 677898 7999999999988887899999999999 888888
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
++. +|...++++....++..++++++|++++||+.. ++.+.+..+ ...+| ++.+-+ +| -+++|+
T Consensus 214 ~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--------ttsiW--sa~~L~-Ng-DIvvg~ 277 (745)
T KOG0301|consen 214 EMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--------TTSIW--SAKVLL-NG-DIVVGG 277 (745)
T ss_pred eee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--------ccceE--EEEEee-CC-CEEEec
Confidence 875 479999999988899999999999999999987 566666533 44567 777776 44 478888
Q ss_pred CCCcEEEEeCCC
Q 007306 571 TNGRVHVIEPLE 582 (608)
Q Consensus 571 ~Dg~v~iW~~~~ 582 (608)
.||.||||....
T Consensus 278 SDG~VrVfT~~k 289 (745)
T KOG0301|consen 278 SDGRVRVFTVDK 289 (745)
T ss_pred cCceEEEEEecc
Confidence 999999999863
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.7e-26 Score=216.32 Aligned_cols=278 Identities=14% Similarity=0.148 Sum_probs=220.4
Q ss_pred CCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 007306 210 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 289 (608)
Q Consensus 210 ~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~ 289 (608)
++....+.|||...+=......-.+.+++.........+.. ..+.|.++.|-.||++||+|...|.|+|+|..
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr-------Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR-------FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh-------hccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 33444457888776433333345688888764211111222 47899999999999999999999999988843
Q ss_pred CCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCC
Q 007306 290 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 365 (608)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 365 (608)
+.. .++... +|..+|..+.|+ +..+++|+ |+.+++||+.+......+.+|...
T Consensus 99 ~r~---------------------iLR~~~--ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 99 SRV---------------------ILRQLY--AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred cHH---------------------HHHHHh--hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 311 111111 699999999999 66788888 789999999998876688999999
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 366 ATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 366 v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
|.|.+|+|.. .+++|+.||.|++||+++. ..+..+. |..+|.++.+-|.|..+++++ ...|++||+.++.+
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q---- 229 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQ---- 229 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCce----
Confidence 9999999987 8999999999999999987 5666665 999999999999999999887 56899999997542
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 521 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~ 521 (608)
.+. ....|. ..|+|+++..++..|++ |-|+.+++||+.+.+.+..+.. .++|.+++.+|+++.++.|..||.
T Consensus 230 ll~-~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 230 LLT-SMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred ehh-hhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccce
Confidence 222 233355 68999999999999999 6999999999988999888864 799999999999999999999998
Q ss_pred EEEEeCCCC
Q 007306 522 VKVFDTSTL 530 (608)
Q Consensus 522 i~iwd~~~~ 530 (608)
+.+=+....
T Consensus 303 v~~rr~~~k 311 (487)
T KOG0310|consen 303 VSIRRREVK 311 (487)
T ss_pred eeeehhhcc
Confidence 877654443
No 98
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=207.01 Aligned_cols=292 Identities=14% Similarity=0.182 Sum_probs=223.6
Q ss_pred CCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEec----CCCccee-
Q 007306 221 DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW----QSNKQSL- 295 (608)
Q Consensus 221 dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~----~~~~~~~- 295 (608)
....+.+++.|.+.+||.++ .+.|... + .||.+.|++++|++.+.++++++.|++..||.. +.+....
T Consensus 159 tqpi~gtASADhTA~iWs~E----sg~CL~~-Y--~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~ 231 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLE----SGACLAT-Y--TGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAP 231 (481)
T ss_pred CCcceeecccccceeEEeec----cccceee-e--cccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCC
Confidence 34478899999999999999 4666632 3 679999999999999999999999999999983 1111100
Q ss_pred -ee------cccceeeEEee---CCCCeeee--ccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEec
Q 007306 296 -EE------ENVNMESQLYQ---PSSKLVMT--NDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA 360 (608)
Q Consensus 296 -~~------~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~ 360 (608)
.. ...+.....-| ...+..++ .....+|.+.|.+..|- |+.+++++ |.+..+||+++|+.+..+.
T Consensus 232 ~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt 311 (481)
T KOG0300|consen 232 SDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT 311 (481)
T ss_pred CCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc
Confidence 00 00000000011 01111111 11122799999999998 88999999 9999999999999999999
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCce
Q 007306 361 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 361 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
+|....+.++-+|.. ++++.+.|.+.++||.+.. ..+..|+||...|+++.|..+. .+++|+.|.+|++||+++.+
T Consensus 312 GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR- 389 (481)
T KOG0300|consen 312 GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR- 389 (481)
T ss_pred CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecccc-
Confidence 999999999999999 9999999999999999854 4567899999999999999765 58899999999999999843
Q ss_pred ecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeec---CCCCCCCeEEEEEecCC--CE
Q 007306 439 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDG--KC 512 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~--~~ 512 (608)
.++.++... ++++.++.+..+..++.- .+..|++||+. |..+..+. ..+|...|++++|..+. .-
T Consensus 390 ---splATIRtd-----S~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cn 460 (481)
T KOG0300|consen 390 ---SPLATIRTD-----SPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACN 460 (481)
T ss_pred ---CcceeeecC-----CccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccc
Confidence 455544433 578999999988888886 56789999995 44433332 23578899999998543 35
Q ss_pred EEEEEcCCeEEEEeCCCC
Q 007306 513 IYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 513 l~sg~~dg~i~iwd~~~~ 530 (608)
|++++-|..+.-|.+...
T Consensus 461 LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 461 LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccceeeeeEeccc
Confidence 788889999999998764
No 99
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.6e-25 Score=227.65 Aligned_cols=221 Identities=11% Similarity=0.072 Sum_probs=169.3
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc--------eeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEE
Q 007306 322 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------TLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 387 (608)
Q Consensus 322 ~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~ 387 (608)
+|.+.|.+++|+ +++|++|+ |++|++||+.++. .+..+.+|...|.+++|+|++ .+++++.|++|+
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr 151 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN 151 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence 799999999999 57999999 9999999997642 344678899999999999998 567999999999
Q ss_pred EEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceE-----EEE
Q 007306 388 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-----HIQ 462 (608)
Q Consensus 388 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~v~ 462 (608)
+||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++++ .+. ...+|. +.+. ...
T Consensus 152 IWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~-----~i~-tl~gH~---g~~~s~~v~~~~ 221 (568)
T PTZ00420 152 IWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE-----IAS-SFHIHD---GGKNTKNIWIDG 221 (568)
T ss_pred EEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc-----EEE-EEeccc---CCceeEEEEeee
Confidence 99999998777775 66789999999999999999999999999999854 333 344665 3332 234
Q ss_pred EcCCCCEEEE-EeC----CcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 463 FHPDQIHLLS-IHE----GQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 463 ~sp~~~~l~~-~~d----~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
|++++.++++ |.+ ++|+|||+++ ++++..+....+.+.+......++|.++++|+.|+.|++|++..+.. ..+
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l 300 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKV 300 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eee
Confidence 5689888888 555 3799999985 56666654433344444444456799999999999999999987742 222
Q ss_pred eceeeccCCCcccccccEEEEEecC
Q 007306 537 NLTAYAQPGTISLELYPLVIAAHPL 561 (608)
Q Consensus 537 ~~~~~~~~g~~~~~v~~~~v~~sp~ 561 (608)
. . ..+..+.. +++|.|.
T Consensus 301 ~--~----~~s~~p~~--g~~f~Pk 317 (568)
T PTZ00420 301 N--E----YKSCSPFR--SFGFLPK 317 (568)
T ss_pred c--c----cccCCCcc--ceEEccc
Confidence 2 1 11233344 7899993
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=4.1e-26 Score=211.66 Aligned_cols=280 Identities=12% Similarity=0.099 Sum_probs=229.7
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
...+.++...|....+++|+.|..+.++|..+++. +..+ .||...|+.+.|+ ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~---------------------l~~~--~Gh~kki~~v~~~~~~~~ 275 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQI---------------------LATL--KGHTKKITSVKFHKDLDT 275 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhh---------------------hhhc--cCcceEEEEEEeccchhh
Confidence 45688888888877899999999998777655543 2221 2799999999999 567
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC--ccccEEEEEE
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAY 412 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~ 412 (608)
+++++ |..|+||.............|..+|+.+..+|.| +|++++.|++..+.|+++|..+..... ..-.+++.+|
T Consensus 276 v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f 355 (506)
T KOG0289|consen 276 VITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF 355 (506)
T ss_pred eeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE
Confidence 88888 9999999998888888889999999999999999 999999999999999999988876653 2345899999
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeee
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~ 491 (608)
+|||..+.+|..|+.+++||+.++. .+. .+.+|. ++|..++|+.+|-+|++ +.|+.|++||++..+..++
T Consensus 356 HpDgLifgtgt~d~~vkiwdlks~~-----~~a-~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 356 HPDGLIFGTGTPDGVVKIWDLKSQT-----NVA-KFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cCCceEEeccCCCceEEEEEcCCcc-----ccc-cCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 9999999999999999999999843 333 466788 89999999999999999 5788899999999998888
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 571 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 571 (608)
+.... ...+.++.|.+.|.+|+.++.|=.|++++-.+.........+ .| .+ ..+.+.|.. ...+++++|.
T Consensus 427 ~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-----~~-sg--~st~v~Fg~-~aq~l~s~sm 496 (506)
T KOG0289|consen 427 IQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-----DH-SG--LSTGVRFGE-HAQYLASTSM 496 (506)
T ss_pred eeccc-cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-----hc-cc--ccceeeecc-cceEEeeccc
Confidence 87753 568999999999999999988877887776554433322221 11 22 244888988 6899999999
Q ss_pred CCcEEEEeC
Q 007306 572 NGRVHVIEP 580 (608)
Q Consensus 572 Dg~v~iW~~ 580 (608)
|..++++.+
T Consensus 497 d~~l~~~a~ 505 (506)
T KOG0289|consen 497 DAILRLYAL 505 (506)
T ss_pred hhheEEeec
Confidence 999988764
No 101
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.5e-25 Score=229.42 Aligned_cols=224 Identities=14% Similarity=0.145 Sum_probs=176.3
Q ss_pred Ee-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCc--------eEEEeeCccccEE
Q 007306 340 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRIT 408 (608)
Q Consensus 340 ~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~~v~ 408 (608)
|+ ++.|++|+......+..+.+|.+.|.+++|+|+ + +|++|+.|++|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 44 688999999888888899999999999999997 5 99999999999999998642 3446788999999
Q ss_pred EEEEeCCCCE-EEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC
Q 007306 409 CLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 486 (608)
Q Consensus 409 ~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~ 486 (608)
+++|+|++.. +++++.|++|++||+++++. +..+ . +. ..|.+++|+|+|.+|++ +.|+.|+|||++++
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-----~~~i-~-~~---~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-----AFQI-N-MP---KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE-----EEEE-e-cC---CcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence 9999998876 57899999999999998542 2212 1 22 57999999999999998 57999999999999
Q ss_pred ceeeeecCCCCCCCe-----EEEEEecCCCEEEEEEcCC----eEEEEeCCC-CceeEEEeceeeccCCCcccccccEEE
Q 007306 487 NHTSQLVPDKMDLPI-----TYATYSCDGKCIYVSCKSG----HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 487 ~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~sg~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
+.+.++.. |.+.+ ....|++++.+|++++.|+ .|+|||+++ ++.+..+... . ...++..
T Consensus 200 ~~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld--------~-~~~~L~p 268 (568)
T PTZ00420 200 EIASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSID--------N-ASAPLIP 268 (568)
T ss_pred cEEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEec--------C-CccceEE
Confidence 99888765 44443 2334568999999988774 799999985 5555554321 1 1222233
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 557 AAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 557 ~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.|.++++.++++|+.|+.|++|++..+.
T Consensus 269 ~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 269 HYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred eeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 4555468899999999999999997764
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.7e-26 Score=202.18 Aligned_cols=291 Identities=14% Similarity=0.096 Sum_probs=209.2
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
||.+.|++++||.||++|+|++.|++|+||++..-.. ....+++..+.-+ --+.+.|+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----------------~eHr~~R~nve~d---hpT~V~FapDc 144 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----------------KEHRCIRQNVEYD---HPTRVVFAPDC 144 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----------------hhhhHhhccccCC---CceEEEECCCc
Confidence 4999999999999999999999999999999865332 1112222212112 34567888
Q ss_pred CCEEEEEe-CCcEEEEEcCC---CceeeE---------ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE
Q 007306 334 GSHLFSAS-GGKISIFSLET---FQTLAT---------FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 399 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~---~~~~~~---------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~ 399 (608)
...++++. ..++++|.+.. |..-.. -+.|.-.+..+-...++ +|++++.|..|.+|+++ |+.+..
T Consensus 145 ~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 145 KSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred ceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 34555555 67899998743 221111 11344556666666777 99999999999999999 888888
Q ss_pred eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC---CceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 475 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d 475 (608)
+......-...+.+|+|+++++++-.-.|++|.+-- ++......+. -..||. +.|..++|+|+.+.+++ +.|
T Consensus 224 idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf-~LkGH~---saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 224 IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF-SLKGHQ---SAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhh-eeccch---hheeeeeeCCCcceeEEEecC
Confidence 887777777889999999999999999999998632 2222222222 356888 79999999999999998 899
Q ss_pred CcEEEEECCC-------CceeeeecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCC
Q 007306 476 GQIDVYEAPT-------LNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 546 (608)
Q Consensus 476 ~~i~iwd~~~-------~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~ 546 (608)
|++++||+.- .+.+++...+.| .+.-..+..+|+|+.|+.+. ...++++..++|+....+.. .
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~-------~ 371 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELED-------I 371 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHH-------h
Confidence 9999999752 122222211111 34445899999999888764 46799999999987766652 1
Q ss_pred cccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 547 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 547 ~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
++..|. +++|+| +|.++||++ |..+++..-..+
T Consensus 372 h~~~Is--~is~~~-~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 372 HSTTIS--SISYSS-DGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred hcCcee--eEEecC-CCcEEeeec-ceeeeeecCCCc
Confidence 244444 999999 899999997 668888875443
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.5e-26 Score=227.78 Aligned_cols=283 Identities=18% Similarity=0.233 Sum_probs=225.3
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCE
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 336 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 336 (608)
.|+..-+.++|.|+|.+|++++.||.|++|+...... ++ ..+. .+...|.+++..+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e--------------~P---~ti~-----~~g~~v~~ia~~s~~ 68 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE--------------EP---ETID-----ISGELVSSIACYSNH 68 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc--------------CC---chhh-----ccCceeEEEeecccc
Confidence 3899999999999999999999999999998755521 11 1110 166778888777678
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
|++|+ +++|.+|.+.+++.-..+....-++++++++.+| +++.|+.|-.|++.+..+......+++|.++|.++.|+|
T Consensus 69 f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred eEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcC
Confidence 88898 9999999999988777777777889999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCC-ccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeee
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 492 (608)
++++||+.+-||.|++||+.++.... .+..+....... ...+..++|+|+|..+++ +.|+.|++|+..++.....+
T Consensus 149 ~~~fLAvss~dG~v~iw~~~~~~~~~--tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 149 KGNFLAVSSCDGKVQIWDLQDGILSK--TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred CCCEEEEEecCceEEEEEcccchhhh--hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee
Confidence 99999999999999999999854321 111111111100 145678999999666666 89999999999999998888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 572 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 572 (608)
....+...+..+.|+|+|+|||+++.||.|.|||+++-+. ..+ .-.|.+++|.| +.+-+-.-...
T Consensus 227 r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~-------------~~~Vc~~aw~p-~~n~it~~~~~ 291 (933)
T KOG1274|consen 227 RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF-------------KRAVCCEAWKP-NANAITLITAL 291 (933)
T ss_pred cccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc-------------cceeEEEecCC-CCCeeEEEeec
Confidence 8766666699999999999999999999999999998332 211 12255999999 67666555555
Q ss_pred CcEEEE
Q 007306 573 GRVHVI 578 (608)
Q Consensus 573 g~v~iW 578 (608)
|...+|
T Consensus 292 g~~~~~ 297 (933)
T KOG1274|consen 292 GTLGVS 297 (933)
T ss_pred cccccC
Confidence 544444
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-25 Score=199.55 Aligned_cols=295 Identities=16% Similarity=0.145 Sum_probs=215.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCC-CCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC-CCcEEEEecCCCc
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLIN-EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNK 292 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~-~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~~~~~~ 292 (608)
.+.||.||++|++++.|++|++|++.+-. ....|.+..++ -+..+.++|+||-+-++.... ..++++|.....+
T Consensus 91 ~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve----~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~ 166 (420)
T KOG2096|consen 91 DVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE----YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKT 166 (420)
T ss_pred eeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc----CCCceEEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence 45899999999999999999999987521 11233333333 346788999999876655544 5689998764332
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEE
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 369 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 369 (608)
- ........-||-. .+...|.-.+..+-.. +.+|++++ |..|.+|++. |+.+..+......-+..
T Consensus 167 d----G~~~~~~v~~D~~-------~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 167 D----GSGSHHFVHIDNL-------EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred c----CCCCccccccccc-------ccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 1 1111111122210 1222466667666666 77999999 9999999999 99999998777777888
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCC---C-----ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCcee-
Q 007306 370 ILLPQD-LFAFGFDDSSILVHCPCT---K-----KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL- 439 (608)
Q Consensus 370 ~~~~~~-~l~~~~~d~~i~vwd~~~---~-----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~- 439 (608)
+.+|+| ++++++..-.|++|.+-- | ..+..++||++.|..++|+|+.+.+++.+.||++++||++-.-..
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 999999 999999999999998632 2 234568899999999999999999999999999999998642111
Q ss_pred -cccceeeee-ccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 440 -CSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 440 -~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
..+.+++.. .-|.. .+.-..+.++|+|+.|+++....+++|..++|+....+.. .|...|.+++|+++|+++++++
T Consensus 315 qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~-~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED-IHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred CCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHH-hhcCceeeEEecCCCcEEeeec
Confidence 011222110 00110 0334489999999999999889999999999988777764 4799999999999999999986
Q ss_pred cCCeEEEEeCC
Q 007306 518 KSGHVKVFDTS 528 (608)
Q Consensus 518 ~dg~i~iwd~~ 528 (608)
|..++++.-.
T Consensus 393 -dr~vrv~~nt 402 (420)
T KOG2096|consen 393 -DRYVRVIRNT 402 (420)
T ss_pred -ceeeeeecCC
Confidence 6778877643
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2e-25 Score=198.03 Aligned_cols=266 Identities=13% Similarity=0.106 Sum_probs=201.0
Q ss_pred eEeecC-CCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 215 ESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 215 ~~~~s~-dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.++||| ....++.+|.||+||+|+++. .+....... ..|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~---~g~~~~ka~--~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQN---SGQLVPKAQ--QSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEec---CCcccchhh--hccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 458999 455666899999999999986 223222112 23899999999999999999999999999998877754
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C--CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G--SHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~--~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
.+.- .|.++|.++.|- . ..|++|+ |.+|+.||++...++.++.- .+.+.+
T Consensus 107 ---------------------~~v~---~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa 161 (347)
T KOG0647|consen 107 ---------------------SQVA---AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYA 161 (347)
T ss_pred ---------------------eeee---ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeee
Confidence 1111 499999999998 2 3789999 99999999998888888764 344555
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCCCCceEE-Eee-CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee
Q 007306 369 FILLPQDLFAFGFDDSSILVHCPCTKKTKA-KLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 369 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 446 (608)
+..-.. +++++..++.|.+|+++++.... ... .-.-.++|++..+|....+.|+-+|.+.+..++.+.......++
T Consensus 162 ~Dv~~p-m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk- 239 (347)
T KOG0647|consen 162 ADVLYP-MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK- 239 (347)
T ss_pred hhccCc-eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE-
Confidence 443222 88899999999999998764321 111 12346889999998888899999999999998875332222222
Q ss_pred eeccCCC------CccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 447 FQTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 447 ~~~~~~~------~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
.|.. .-..|++|+|+|....|++ |+||++.+||-.....+.+.. .|..+|++.+|+.+|.+++-+.
T Consensus 240 ---CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~--~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 240 ---CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE--THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ---EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC--cCCCccceeEecCCCCEEEEEe
Confidence 2210 0146889999999888888 899999999988776666654 3699999999999999887553
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.8e-25 Score=198.30 Aligned_cols=270 Identities=12% Similarity=0.116 Sum_probs=204.5
Q ss_pred CCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 258 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 258 h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
-.+.|.+++||| ...+++++|-||+|++|+++.... ....... .|.++|.+++|+ |
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~--------------------~~~ka~~-~~~~PvL~v~Wsddg 84 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ--------------------LVPKAQQ-SHDGPVLDVCWSDDG 84 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCc--------------------ccchhhh-ccCCCeEEEEEccCC
Confidence 478999999999 555666888899999999876422 1110011 599999999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
..+++|+ |+.+++||+.++ ....+..|.++|.++.|-+.. .|++|+.|++|+.||++...++.++. -..++.++
T Consensus 85 skVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 85 SKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred ceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 8899988 999999999999 556677899999999997765 89999999999999999988888776 34566666
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCcee
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHT 489 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~ 489 (608)
..- ..+++++..++.|.+|+++++..... .+. . |..-.+++|+..+|....+. +-+|.+.|..+..+.+.
T Consensus 163 Dv~--~pm~vVata~r~i~vynL~n~~te~k-~~~---S---pLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~ 233 (347)
T KOG0647|consen 163 DVL--YPMAVVATAERHIAVYNLENPPTEFK-RIE---S---PLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK 233 (347)
T ss_pred hcc--CceeEEEecCCcEEEEEcCCCcchhh-hhc---C---cccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc
Confidence 543 35788899999999999987432211 111 1 11156889999988776676 58999999988776332
Q ss_pred --eeecCCCC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec
Q 007306 490 --SQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 490 --~~~~~~~~-------~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
.+|+.+.. -..|.+++|+|.-..|++.+.||++.+||-.....+.....+ ..+|. +.+|+.
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--------~qpIt--cc~fn~ 303 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--------PQPIT--CCSFNR 303 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--------CCccc--eeEecC
Confidence 23332211 235788999999999999999999999999887766665432 44444 999999
Q ss_pred CCCCEEEEEe
Q 007306 561 LEPNRIALGL 570 (608)
Q Consensus 561 ~d~~~las~s 570 (608)
+|.++|-+.
T Consensus 304 -~G~ifaYA~ 312 (347)
T KOG0647|consen 304 -NGSIFAYAL 312 (347)
T ss_pred -CCCEEEEEe
Confidence 788887663
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=225.32 Aligned_cols=279 Identities=18% Similarity=0.222 Sum_probs=221.1
Q ss_pred EEEEe-eCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEE
Q 007306 264 RLIYS-HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 340 (608)
Q Consensus 264 ~~~fs-p~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~ 340 (608)
.+..+ |.++||+|||.||.|++|++...... +.+.....+ +.|.+.|+.+... ++.|+++
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~--------------~s~~~~asm---e~HsDWVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNE--------------PSTPYIASM---EHHSDWVNDIILCGNGKTLISA 91 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCC--------------cccchhhhh---hhhHhHHhhHHhhcCCCceEEe
Confidence 34444 46778999999999999998654321 011111111 1599999999988 7799999
Q ss_pred e-CCcEEEEEcCCC--ceeeEecCCCCCeEEEEE-cCCC-eEEEEeCCCcEEEEeCCCCc--eEE--------Eee-Ccc
Q 007306 341 S-GGKISIFSLETF--QTLATFANPPPIATYFIL-LPQD-LFAFGFDDSSILVHCPCTKK--TKA--------KLK-GHQ 404 (608)
Q Consensus 341 ~-d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~-~l~~~~~d~~i~vwd~~~~~--~~~--------~~~-~~~ 404 (608)
+ |-+|++|+...+ -+..++..|..-|.|+++ -++. .+|+|+-|+.|.+||+.++. .+. .+. |+.
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 9 999999999877 678889999999999999 6777 99999999999999999872 222 223 788
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEEC
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 483 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~ 483 (608)
..|.+++.++.|..+++|+..+.+++||.++.+ +.++ ..||. ..|..+..++||+.+++ ++||+|++||+
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----kimk--LrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----KIMK--LRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEecccccc----ceee--eeccc---cceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 899999999999999999999999999999943 2222 44898 79999999999999999 69999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
...+++.++.. |...|+++..+|+-.++++|+.||.|+.=|+.+......+... .+++. .+..+.. .
T Consensus 243 gqQrCl~T~~v--H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--------daPv~--~l~~~~~-~ 309 (735)
T KOG0308|consen 243 GQQRCLATYIV--HKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--------DAPVL--KLHLHEH-D 309 (735)
T ss_pred cccceeeeEEe--ccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--------CCchh--hhhhccc-c
Confidence 99999999875 5788999999999999999999999999999885332222211 44444 5555542 2
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 007306 564 NRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~ 581 (608)
+-+-+++.|+.|+-|...
T Consensus 310 ~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 310 NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CCceeeeccccceecCCc
Confidence 334666789999999764
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=6.8e-25 Score=214.88 Aligned_cols=344 Identities=18% Similarity=0.207 Sum_probs=248.7
Q ss_pred CCCeEEEeecCCeEEEeeccCCCCCC---------------------cee-eEeecC--CCCCCcEEEEEEeeCCCEEEE
Q 007306 221 DADSAVCAKSLEKSVNLKLQLINEPS---------------------ECR-TLLLPD--NSFGGRVVRLIYSHSGDFLVA 276 (608)
Q Consensus 221 dg~~l~~~~~d~~i~iWd~~~~~~~~---------------------~~~-~~~l~~--~~h~~~V~~~~fsp~g~~l~s 276 (608)
+.-+||++|.|..||||.+.-..+.. ++. .+.++. .||.+.|.++.|+|.+..|++
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 45689999999999999875322111 000 000101 479999999999999989999
Q ss_pred EeCCCcEEEEecCCCcceee-------ec--cccee-------------------eEEeeCC-CCeeeeccccCCCCCCe
Q 007306 277 LTQTATHKLWKWQSNKQSLE-------EE--NVNME-------------------SQLYQPS-SKLVMTNDIAADPKDSI 327 (608)
Q Consensus 277 ~s~dg~i~iw~~~~~~~~~~-------~~--~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~~~v 327 (608)
+|.|.++.+|.-.+..-+-. .. ...+. .++|..+ ...........||.+.|
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 99999999998766532110 11 11122 2556522 22233333445899999
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEEcCC----CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC------
Q 007306 328 SCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT------ 393 (608)
Q Consensus 328 ~~v~~s--~~~l~s~~-d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~------ 393 (608)
.+++|. |.+|++.+ |.+-|++-.-. ...+..-+-|....+|+++-+.. .+++|.+.+.+++|+...
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 999999 99999999 99999986541 12223334678889999998867 999999999999998641
Q ss_pred -------------------------------------Cc---------------------------------eEEEeeCc
Q 007306 394 -------------------------------------KK---------------------------------TKAKLKGH 403 (608)
Q Consensus 394 -------------------------------------~~---------------------------------~~~~~~~~ 403 (608)
|. .++.+.||
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 00 01123478
Q ss_pred cccEEEEEEeCCCCEEEEEcCC-----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCc
Q 007306 404 QNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 477 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~ 477 (608)
...|.+++.+|+|+++|+++.. ..|++|+..++. ..+ ...+|. -.|+.++|||||++|++ +.|++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~-----~~~-~L~~Hs---LTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL-----QVQ-ELEGHS---LTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh-----hhh-eecccc---eEEEEEEECCCCcEEEEeecCce
Confidence 8999999999999999999864 459999998843 333 455787 68999999999999998 89999
Q ss_pred EEEEECCCCcee-eeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC--ceeEEEeceeeccCCCccccccc
Q 007306 478 IDVYEAPTLNHT-SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 478 i~iwd~~~~~~~-~~~~-~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~g~~~~~v~~ 553 (608)
+.+|........ ..|. ...|..-|+++.|+|++.+++++|.|.+|++|..... +.+..+... .+ + ..+
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~-----~~-~--~aV 667 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL-----KF-S--LAV 667 (764)
T ss_pred EEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh-----cc-C--Cce
Confidence 999997543211 1111 2357899999999999999999999999999999887 444332211 11 2 225
Q ss_pred EEEEEecCCCC----EEEEEeCCCcEEEEeCC
Q 007306 554 LVIAAHPLEPN----RIALGLTNGRVHVIEPL 581 (608)
Q Consensus 554 ~~v~~sp~d~~----~las~s~Dg~v~iW~~~ 581 (608)
++++|.|.+.+ .++.|-..|.|.+|...
T Consensus 668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eeEEeeccccccccceEEEEecccEEEEEecc
Confidence 68888886544 78888899999999966
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4.7e-26 Score=214.62 Aligned_cols=276 Identities=12% Similarity=0.082 Sum_probs=221.0
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.++.+|...++++||+. |-|+|||+.......-..+ |+-..-...|.++..+|||+.|++|+.-.++.|||+.....
T Consensus 423 cAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~Pvsq--Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp 499 (705)
T KOG0639|consen 423 CAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQ--LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP 499 (705)
T ss_pred EEEEecCCcceeEecCC-CeEEEeeccCCCCCCcccc--ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc
Confidence 34678888889988876 7799999975322221222 11111467899999999999999999999999999977754
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 370 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 370 (608)
... ..+. ...-...+++.+ .+..++|. ||.|.|||+.+...++.|++|...+.||.
T Consensus 500 rik--------------------aelt-ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 500 RIK--------------------AELT-SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 558 (705)
T ss_pred chh--------------------hhcC-CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEE
Confidence 111 0000 123445667777 55555666 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeec
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 449 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 449 (608)
+++|| .|.+|+-|++|+.||+++++.+.... ..+.|.++..+|++.++++|-.++.+.+......++ .. ..
T Consensus 559 is~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k---yq----lh 630 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK---YQ----LH 630 (705)
T ss_pred ecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccc---ee----ec
Confidence 99999 99999999999999999998776554 567899999999999999999999999988776432 11 22
Q ss_pred cCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 450 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 450 ~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
-|. +-|.++.|.+-|+++++ |.|+-+..|...-|..+.... ....|.++.+|.|.++|++|+.|..-.||.+
T Consensus 631 lhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 631 LHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeecc---ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 444 68999999999999999 899999999998888776664 3889999999999999999999988888765
No 110
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=6.3e-25 Score=195.75 Aligned_cols=268 Identities=13% Similarity=0.112 Sum_probs=207.9
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
-.+.|.+|.|+|.+..|++++.||++++|++....... . + .|..++.+++|. ...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~---------------------~-~--~~~~plL~c~F~d~~~ 67 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL---------------------K-F--KHGAPLLDCAFADEST 67 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh---------------------h-e--ecCCceeeeeccCCce
Confidence 36789999999999999999999999999886654311 0 1 489999999999 888
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
+++|+ ||.|+.+|+.++... .+..|..+|.|+..++.. .+++|+.|++|++||.+.......+. ....|.++..
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v-- 143 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV-- 143 (323)
T ss_pred EEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEec--
Confidence 99999 999999999987654 445699999999999877 99999999999999999755555554 3347888766
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC----cee
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL----NHT 489 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~----~~~ 489 (608)
.|+.|++|+.|..+.+||+++... +.+.....-. ..++++++-|++.-.++ +-||.|.+=.++.. +..
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lk---yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLK---YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccc----hhhhccccce---eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 477899999999999999998542 2221111222 67899999998765555 68999887666544 122
Q ss_pred eeecCCC-------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 490 SQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 490 ~~~~~~~-------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
..|+.+. -..+|.+++|+|-...+++|+.||.|.+||+.+.+.+..+..- . ..+..++|+. |
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--------~--~SI~slsfs~-d 285 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--------E--TSISSLSFSM-D 285 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--------C--CceEEEEecc-C
Confidence 2232211 1347999999999999999999999999999999888877521 2 2245999999 8
Q ss_pred CCEEEEEeC
Q 007306 563 PNRIALGLT 571 (608)
Q Consensus 563 ~~~las~s~ 571 (608)
|..||+++.
T Consensus 286 G~~LAia~s 294 (323)
T KOG1036|consen 286 GSLLAIASS 294 (323)
T ss_pred CCeEEEEec
Confidence 999999974
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=5.4e-25 Score=194.35 Aligned_cols=300 Identities=16% Similarity=0.164 Sum_probs=221.0
Q ss_pred CCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 258 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 258 h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
|.+.|+++...+ .|+|+++|+.||.|.+||++........ . .+. +..-.+......+|+-.|..+.|.
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s---~---li~--k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS---G---LIA--KHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc---c---cee--heeeeccccCCccceeeeeeeEEeeec
Confidence 899999999988 7999999999999999999765420000 0 000 011112222233799999999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCceEEEeeCccccEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD----LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 408 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 408 (608)
...+.+++ |.+++|||.++-+....|+ ..+.|.+-+++|-. ++++|..|-.|++.|+.+|..-+.+.||.+.|.
T Consensus 114 tGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 114 TGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred CceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 55788888 9999999999988887776 45678888888753 788999999999999999999999999999999
Q ss_pred EEEEeCCCCE-EEEEcCCCcEEEEECCCCce-e--------cccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCc
Q 007306 409 CLAYSLSLNV-LVSSGADAQLCVWDAVGWKK-L--------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 477 (608)
Q Consensus 409 ~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~-~--------~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~ 477 (608)
++.|+|...+ |++|+.||.|++||++.-.. . ...++......|. +.+..++|+.++.++++ +.|..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~---gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHY---GKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccc---ceeeeeeecccchhhhhccCccc
Confidence 9999997766 78999999999999986311 0 0011111233454 78999999999999998 79999
Q ss_pred EEEEECCCCceeeeecCC-CCC---CCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccccc
Q 007306 478 IDVYEAPTLNHTSQLVPD-KMD---LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 478 i~iwd~~~~~~~~~~~~~-~~~---~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 553 (608)
+++|+..+|+....-.++ .|+ ..-..+. +-+...++.--.++.+.++++-.|..+..+.. | ... +
T Consensus 270 ~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~-------h-~k~--i 338 (397)
T KOG4283|consen 270 IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST-------H-LKR--I 338 (397)
T ss_pred eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec-------c-cce--e
Confidence 999999887642211111 111 1111122 33344444444568999999999998888763 3 333 4
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 554 LVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
.+.+|-| +-....+|..|+.+..|-+.
T Consensus 339 ~c~~~~~-~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 339 NCAAYRP-DFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eEEeecC-chhhhhccccCCcccccccc
Confidence 4888999 78899999999999999984
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.7e-26 Score=195.48 Aligned_cols=246 Identities=17% Similarity=0.197 Sum_probs=196.2
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
..|.+.|..+...--|++|||++.|++|+|+.+..+... .++.. ..||.++|+.++|.
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s------------------~ll~~--L~Gh~GPVwqv~wahP 67 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS------------------KLLAE--LTGHSGPVWKVAWAHP 67 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc------------------eeeeE--ecCCCCCeeEEeeccc
Confidence 349999999999889999999999999999988766531 11111 11899999999998
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCce--eeEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCC---ceEEEeeC
Q 007306 334 --GSHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTK---KTKAKLKG 402 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~~---~~~~~~~~ 402 (608)
|.+|++++ ||.|.||.-.+|+- ......|...|++++|.|.+ .|++++.||.|.|.+.++. ...+....
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 89999999 99999999887743 33455899999999999987 8999999999999987754 22344567
Q ss_pred ccccEEEEEEeCC---C-----------CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC-
Q 007306 403 HQNRITCLAYSLS---L-----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 467 (608)
Q Consensus 403 ~~~~v~~~~~~~~---~-----------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~- 467 (608)
|.-.|++++|.|. | +.|++|+.|..|++|+...++ -.+...+.+|. +.|+.++|.|.-
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~---dwVRDVAwaP~~g 220 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHK---DWVRDVAWAPSVG 220 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcc---hhhhhhhhccccC
Confidence 9999999999985 4 569999999999999998863 22333467898 899999999974
Q ss_pred ---CEEEE-EeCCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 468 ---IHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 468 ---~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
.+|++ +.||++.||..+.. .-..++.. .....++++.||..|+.|+.++.|+.|.+|.-..
T Consensus 221 l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 221 LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 56777 59999999987622 11112211 2367899999999999999999999999998654
No 113
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-23 Score=205.28 Aligned_cols=359 Identities=14% Similarity=0.143 Sum_probs=259.1
Q ss_pred CCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 007306 210 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 289 (608)
Q Consensus 210 ~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~ 289 (608)
|...+..+++.+.+.||.+-.||.|.||++.. .-+....+.+ +-...|-+++|++.| .|.+.+.+|.|.-||+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g-~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHG-PEDRSIESLAWAEGG-RLFSSGLSGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCC----CceeeEEEec-CCCCceeeEEEccCC-eEEeecCCceEEEEecc
Confidence 44445668999999999999999999999984 5455445655 245689999999555 58999999999999999
Q ss_pred CCcceeeecc---------------------cceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcE
Q 007306 290 SNKQSLEEEN---------------------VNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKI 345 (608)
Q Consensus 290 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i 345 (608)
+.+....... .+.....++...+.+.........++.|.+++|+ +..+++|+ ||.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I 178 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI 178 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceE
Confidence 8887654111 1122234444444433222222356899999999 77799999 9999
Q ss_pred EEEEcCCCceeeEec--------CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCC
Q 007306 346 SIFSLETFQTLATFA--------NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 417 (608)
Q Consensus 346 ~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 417 (608)
++||+.++..+.... ....-|+++.+-.++.|++|..-|+|.+||...+..++.+..|.+.|.+++..+++.
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d 258 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNED 258 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCC
Confidence 999999988776322 123346788888777999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCceec---------cccee-------------------------------------------
Q 007306 418 VLVSSGADAQLCVWDAVGWKKLC---------SKFLH------------------------------------------- 445 (608)
Q Consensus 418 ~l~s~~~d~~i~vwd~~~~~~~~---------~~~~~------------------------------------------- 445 (608)
++++++.|+.|..|...+..... ...++
T Consensus 259 ~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v 338 (691)
T KOG2048|consen 259 RVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRV 338 (691)
T ss_pred eEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhcccccccccee
Confidence 99999999998887765542100 00000
Q ss_pred ------------------------eeeccCC----------CCccceEEEEEcCCCCEEEEEeCCcEEEEECCC------
Q 007306 446 ------------------------SFQTGLV----------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT------ 485 (608)
Q Consensus 446 ------------------------~~~~~~~----------~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~------ 485 (608)
....++. +....|.+.+.||+|.+++.+.-...++|.+..
T Consensus 339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~ 418 (691)
T KOG2048|consen 339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKV 418 (691)
T ss_pred ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeE
Confidence 0000000 001457888999999999987644455554332
Q ss_pred --------------------------------------------CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 007306 486 --------------------------------------------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 521 (608)
Q Consensus 486 --------------------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~ 521 (608)
++.+..+........|..+..||+|+|||+.+.+|.
T Consensus 419 ~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~ 498 (691)
T KOG2048|consen 419 INVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQ 498 (691)
T ss_pred EEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccce
Confidence 001111111112467999999999999999999999
Q ss_pred EEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 522 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 522 i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
|.+|++++++....... -+..+++++|+|.+.+.|+.+..|++|.-+|+...+
T Consensus 499 I~v~nl~~~~~~~l~~r----------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 499 IFVYNLETLESHLLKVR----------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred EEEEEcccceeecchhc----------cCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 99999999876554421 124577999997788899999999999999995443
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.3e-25 Score=211.67 Aligned_cols=280 Identities=15% Similarity=0.181 Sum_probs=223.1
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
.|..-|.++++|...++++||+. |-|+|||+....... .+.-.| ++ .....|.++... |
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~-------PvsqLd-----cl------~rdnyiRSckL~pdg 477 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKS-------PVSQLD-----CL------NRDNYIRSCKLLPDG 477 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCC-------cccccc-----cc------CcccceeeeEecCCC
Confidence 38889999999999999999876 789999986553200 000111 11 245667777777 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCcee--eEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
+.|++|+ -.++.|||+...... ..+........+++.+||. ..+++..||.|.|||+.+...++.|+||.+.+.||
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI 557 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 557 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence 8999999 899999999765443 2333334556778999999 88999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCcee
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 489 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~ 489 (608)
..++||..|.+|+-|.+|+.||++.++......+. +.|.++..+|++.++++| .++.+.+..... ..
T Consensus 558 dis~dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~- 625 (705)
T KOG0639|consen 558 DISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PE- 625 (705)
T ss_pred EecCCCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheecccCCCccceeeecccCcEEEEecCC-cc-
Confidence 99999999999999999999999996544333333 689999999999999998 677888887743 33
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
.+..+.|...|.++.|.+.|+|+++.+.|+.+..|...-|..+..... ... |+++..|- |..+++||
T Consensus 626 -kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---------~Ss--VlsCDIS~-ddkyIVTG 692 (705)
T KOG0639|consen 626 -KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---------SSS--VLSCDISF-DDKYIVTG 692 (705)
T ss_pred -ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---------cCc--ceeeeecc-CceEEEec
Confidence 233345789999999999999999999999999999999987665432 222 55888888 78999999
Q ss_pred eCCCcEEEEeC
Q 007306 570 LTNGRVHVIEP 580 (608)
Q Consensus 570 s~Dg~v~iW~~ 580 (608)
|.|..-.||.+
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 99998888875
No 115
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=6.6e-25 Score=215.09 Aligned_cols=264 Identities=15% Similarity=0.182 Sum_probs=213.1
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEE-EEEee-CCCEEEEEeCCCcEEEEecCCCccee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR-LIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~-~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
..-++-.++++|.||++++|+-.++ .-.....+ .+|.+-|.+ ++|-+ ++-.+++|+.|+.+.+|...+...
T Consensus 21 ~~~~~~~i~s~sRd~t~~vw~~~~~---~~l~~~~~--~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P-- 93 (745)
T KOG0301|consen 21 AVTDGVCIISGSRDGTVKVWAKKGK---QYLETHAF--EGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP-- 93 (745)
T ss_pred EecCCeEEeecCCCCceeeeeccCc---ccccceec--ccCcceeeccceeccccCcceEeecccceEEEEecCCCCc--
Confidence 3455668999999999999998642 22221223 337777777 77775 455699999999999988766554
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 373 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 373 (608)
+. ...+|...|.|++.. ...+++|+ |.++++|-. +++...+.+|...|++++.-|
T Consensus 94 -------------------~~--~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 94 -------------------LY--TLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLP 150 (745)
T ss_pred -------------------hh--hhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecC
Confidence 11 112799999999977 55599999 999999986 567777999999999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCC
Q 007306 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 453 (608)
Q Consensus 374 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 453 (608)
++.+++|+.|++|++|.- ++.+++|.+|.+.|+.+++-+++ .+++++.||.|++|++.. ..+. ...+|.
T Consensus 151 e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g------e~l~-~~~ght- 219 (745)
T KOG0301|consen 151 ENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG------EVLL-EMHGHT- 219 (745)
T ss_pred CCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC------ceee-eeeccc-
Confidence 999999999999999975 78899999999999999999875 477899999999999955 3444 456787
Q ss_pred CccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 454 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 454 ~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
.-|.++...+++..+++ |.|++++||+.. ++.+.+..+ ...|+++.+-++|. |++|+.||.||||....
T Consensus 220 --n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 220 --NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred --eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 78999997777777777 799999999985 777888654 66899999998887 67788899999998763
No 116
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=1.4e-25 Score=210.03 Aligned_cols=251 Identities=15% Similarity=0.245 Sum_probs=198.1
Q ss_pred CCCcEEEEEEeeCCC-EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 258 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
|.+.|+.+.+-|... .+|+.+..+.+.|||..+..-... ..+.+...+...+|.+.-++++|+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~-------------~~~~~~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPK-------------ASGECRPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccc-------------ccccCCCceEEEeeccccccccccccc
Confidence 899999999999665 556667789999999866543110 111222222222788888889999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc-------eeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC--CCceEEEee
Q 007306 334 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC--TKKTKAKLK 401 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~--~~~~~~~~~ 401 (608)
...|++++ |++|.+||+.... ....+.+|...|..++|++.. .|++++.|+.+.|||++ +.++.+...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 55788888 9999999996532 345678999999999999988 99999999999999999 556667788
Q ss_pred CccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE-E-EeCCcE
Q 007306 402 GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S-IHEGQI 478 (608)
Q Consensus 402 ~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~-~~d~~i 478 (608)
+|.+.|+|++|+| ++..||+|+.|++|++||+++.. .++. .+.+|. ..|..+.|+|+..-++ + |.|+.+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----~~lh-~~e~H~---dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----KPLH-TFEGHE---DEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----cCce-eccCCC---cceEEEEeCCCCCceeEecccCCcE
Confidence 8999999999999 66779999999999999999854 4666 677888 7999999999875554 4 599999
Q ss_pred EEEECCCCceee------------eecCCCCCCCeEEEEEecCCCE-EEEEEcCCeEEEEeCCC
Q 007306 479 DVYEAPTLNHTS------------QLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKVFDTST 529 (608)
Q Consensus 479 ~iwd~~~~~~~~------------~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~iwd~~~ 529 (608)
.+||+..-...+ -|.-++|...|..+.|+|+..+ |++.++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999986422211 2444578999999999998876 56788999999999873
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.8e-23 Score=197.56 Aligned_cols=315 Identities=14% Similarity=0.129 Sum_probs=235.3
Q ss_pred eecC--CCCeEEEe--ecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 217 TSLP--DADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 217 ~~s~--dg~~l~~~--~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
+||+ .|..+..- +.+..+.+||.+.+...++... ..+.|...+|+|.+..|+.....|.+..|++..+.
T Consensus 161 aFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-------sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~ 233 (626)
T KOG2106|consen 161 AFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-------SNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS 233 (626)
T ss_pred eecccCCCceEEEecCCCccccchhhchhhhccCccee-------ccceEEEEEeccCCCcEEEEeCCceEEEEEccCCc
Confidence 4555 34555444 3556789999986544444443 46789999999977766666667889988877765
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEE
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 370 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 370 (608)
.... +-++.+..+.-|.|++|. +.-+++|. +|.|.||+..+.+..+....|++.|.+++
T Consensus 234 l~k~-------------------~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~ 294 (626)
T KOG2106|consen 234 LVKR-------------------QGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLC 294 (626)
T ss_pred eEEE-------------------eeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEE
Confidence 4211 011111234779999999 88889998 99999999988887777779999999999
Q ss_pred EcCCCeEEEEeCCCcEEEEeCCCCce----------------------------------------EEEeeCccccEEEE
Q 007306 371 LLPQDLFAFGFDDSSILVHCPCTKKT----------------------------------------KAKLKGHQNRITCL 410 (608)
Q Consensus 371 ~~~~~~l~~~~~d~~i~vwd~~~~~~----------------------------------------~~~~~~~~~~v~~~ 410 (608)
...+|.|++|+.|+.|..||-.-.+. .....+|......+
T Consensus 295 ~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl 374 (626)
T KOG2106|consen 295 MLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL 374 (626)
T ss_pred EecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE
Confidence 99999777799999999998321100 00123577778889
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCcee
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 489 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~ 489 (608)
+.+|+.+.+++++.|+.+++|+ .. +...+.... .++.++.|+|.| .+++| ..|...+.|.++...+
T Consensus 375 a~hps~~q~~T~gqdk~v~lW~-~~------k~~wt~~~~-----d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 375 ATHPSKNQLLTCGQDKHVRLWN-DH------KLEWTKIIE-----DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLV 441 (626)
T ss_pred EcCCChhheeeccCcceEEEcc-CC------ceeEEEEec-----CceeEeeccCcc-eEEEeeccceEEEEecccceeE
Confidence 9999999999999999999999 22 222212222 578899999999 77775 8899999999885555
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
..- . .+.+++.+.|+|+|.+||.|+.|+.|+||.+............ ++. ..++.+.|++ |+++|.+-
T Consensus 442 ~~~-~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k------~~g--s~ithLDwS~-Ds~~~~~~ 509 (626)
T KOG2106|consen 442 TIH-T--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK------CSG--SPITHLDWSS-DSQFLVSN 509 (626)
T ss_pred EEE-e--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee------ecC--ceeEEeeecC-CCceEEec
Confidence 433 2 2889999999999999999999999999999765443333221 112 4466999999 89999999
Q ss_pred eCCCcEEEEeCCC
Q 007306 570 LTNGRVHVIEPLE 582 (608)
Q Consensus 570 s~Dg~v~iW~~~~ 582 (608)
+.|-.|..|.+..
T Consensus 510 S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 510 SGDYEILYWKPSE 522 (626)
T ss_pred cCceEEEEEcccc
Confidence 9999999995544
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=6.5e-24 Score=212.23 Aligned_cols=335 Identities=12% Similarity=0.110 Sum_probs=256.0
Q ss_pred EeecCCC--CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 216 STSLPDA--DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 216 ~~~s~dg--~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..++|.. +.++.|+.+|.+.+|++.. +... +++++ +.+.|+++.=+|--..+|.|..+|+|.|+++..++.
T Consensus 164 al~HP~TYLNKIvvGs~~G~lql~Nvrt----~K~v-~~f~~--~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki 236 (910)
T KOG1539|consen 164 ALLHPSTYLNKIVVGSSQGRLQLWNVRT----GKVV-YTFQE--FFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI 236 (910)
T ss_pred eEecchhheeeEEEeecCCcEEEEEecc----CcEE-EEecc--cccceeEeccCCcceEEEEeccCceEEEEEcccCcE
Confidence 3466665 4789999999999999984 3333 23444 789999999999999999999999999888776664
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCC-CCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCceeeEec-CCCCCeE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFA-NPPPIAT 367 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s--~~-~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~ 367 (608)
+.. . .| .+.|++++|. |+ .+++++ .|.+.+||++..+.+..++ .|.+.|.
T Consensus 237 l~s---------------------F---k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~ 292 (910)
T KOG1539|consen 237 LMS---------------------F---KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVT 292 (910)
T ss_pred EEE---------------------E---EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcc
Confidence 211 1 25 4899999999 55 566666 7999999999888877776 7889999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCC----ceEEEeeCccccEEEEEEe-CCCCEEEEEcCCCcEEEEECCCCcee--
Q 007306 368 YFILLPQD-LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKL-- 439 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~-- 439 (608)
...|.|.. .+++++.|+.+++|=.+++ +.++.-.||..+..|+.|. .+|..+.+++.|++.+.+++......
T Consensus 293 ~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 293 GATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred cceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 99999999 9999999998888755443 3445556799999999998 58888999999998887766431100
Q ss_pred -------------ccc--------cee-------------eeeccCC--------------------------CCccceE
Q 007306 440 -------------CSK--------FLH-------------SFQTGLV--------------------------PETTIVN 459 (608)
Q Consensus 440 -------------~~~--------~~~-------------~~~~~~~--------------------------~~~~~v~ 459 (608)
... ++- .+...|. +....++
T Consensus 373 l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~ 452 (910)
T KOG1539|consen 373 LGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINAT 452 (910)
T ss_pred hcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceE
Confidence 000 000 0000000 0115688
Q ss_pred EEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 460 HIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 460 ~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
+++.++.|.+.+.| +.|.|-+|++.+|-...+|. ...|..+|+.++...-++.+++++.+|.+.+||..+..++..+.
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec
Confidence 99999999999996 88999999999999888883 23579999999999999999999999999999999877555443
Q ss_pred ceeec----------------------------------cCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 538 LTAYA----------------------------------QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 538 ~~~~~----------------------------------~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
..... ..|| +.. +++++||| ||++|++++.|++||+||+.++
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh-~nr--itd~~FS~-DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH-GNR--ITDMTFSP-DGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc-ccc--eeeeEeCC-CCcEEEEeecCCcEEEEeccCc
Confidence 21100 2355 333 55999999 8999999999999999999998
Q ss_pred cc
Q 007306 584 EV 585 (608)
Q Consensus 584 ~~ 585 (608)
..
T Consensus 609 ~l 610 (910)
T KOG1539|consen 609 TL 610 (910)
T ss_pred ce
Confidence 75
No 119
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.7e-24 Score=189.06 Aligned_cols=264 Identities=15% Similarity=0.199 Sum_probs=200.9
Q ss_pred EEEeecCCeEEEeeccCCC------CCCcee-eEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeee
Q 007306 225 AVCAKSLEKSVNLKLQLIN------EPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 225 l~~~~~d~~i~iWd~~~~~------~~~~~~-~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~ 297 (608)
++.|+....|.-+++.-.. .+..+. .+.+ ..|.+.|++++.+ |.|+|+||.|-+|+|||..+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~--~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q---- 75 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAF--SAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ---- 75 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccc--cccccceeEEEec--ceeEeccCCCCcEEEEeccchhh----
Confidence 5667776666666654211 001111 1222 4499999999975 88999999999999999877654
Q ss_pred cccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-C---CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEc
Q 007306 298 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 372 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~---~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 372 (608)
.|.++ .|.+.|+++.|. . +.|++|+ ||.|.+|+.....++.++++|.+.|+.++++
T Consensus 76 -------------lg~ll------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiH 136 (362)
T KOG0294|consen 76 -------------LGILL------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIH 136 (362)
T ss_pred -------------hccee------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEec
Confidence 12222 499999999999 2 3799999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC
Q 007306 373 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 373 ~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
|.+ +-++.+.|+.+++||+-.|+.-..++- ....+.+.|+|.|.+++.+..+ .|-+|.+.+.. .+..+...
T Consensus 137 PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~-----v~~~i~~~- 208 (362)
T KOG0294|consen 137 PSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS-----VFREIENP- 208 (362)
T ss_pred CCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEecccHh-----Hhhhhhcc-
Confidence 999 888889999999999998876655542 2233459999999988877754 67899887732 22211111
Q ss_pred CCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEE--ecCCCEEEEEEcCCeEEEEeCC
Q 007306 452 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
..+.++.|... ..+++ +.|+.|.+||..+..+...+.. |...|-++.+ .|++.+|+++|.||.|+|||++
T Consensus 209 ----~r~l~~~~l~~-~~L~vG~d~~~i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 209 ----KRILCATFLDG-SELLVGGDNEWISLKDTDSDTPLTEFLA--HENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ----ccceeeeecCC-ceEEEecCCceEEEeccCCCccceeeec--chhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 24667777654 45555 6889999999998888877764 7899999884 3788999999999999999998
Q ss_pred CC
Q 007306 529 TL 530 (608)
Q Consensus 529 ~~ 530 (608)
..
T Consensus 282 ~~ 283 (362)
T KOG0294|consen 282 ME 283 (362)
T ss_pred cc
Confidence 75
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.5e-25 Score=190.62 Aligned_cols=254 Identities=12% Similarity=0.100 Sum_probs=197.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC---ceeeEecCCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPC 392 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~d~~i~vwd~~ 392 (608)
.|.+.|..+... |+.|++|+ |++|+|+.+... +.+.++.+|.++|+.++|.. -| .|++++.||.|.||.-.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 588888887776 99999999 999999999764 46788999999999999965 56 99999999999999988
Q ss_pred CCce--EEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC--
Q 007306 393 TKKT--KAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-- 466 (608)
Q Consensus 393 ~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-- 466 (608)
+|+- ...+..|...|++++|.|. |-.|++++.||.|.+.+.++.- ......+...|. -.|++++|.|.
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g---~w~t~ki~~aH~---~GvnsVswapa~~ 162 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG---GWTTSKIVFAHE---IGVNSVSWAPASA 162 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC---Cccchhhhhccc---cccceeeecCcCC
Confidence 8743 3455679999999999985 5679999999999999988741 122222455777 68999999986
Q ss_pred -C-----------CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEEEeCCC
Q 007306 467 -Q-----------IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 467 -~-----------~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~sg~~dg~i~iwd~~~ 529 (608)
| +.|++ |.|+.|+||+..++.-+..-...+|.+.|..++|.|.- .+|++++.||+|.||....
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred CccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 4 56888 69999999999886543333334689999999999964 5799999999999998863
Q ss_pred CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 530 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
.......+....+ ...++ .++||+ .|++|+.++.|..|.+|.-. .+.+|...
T Consensus 243 e~e~wk~tll~~f-----~~~~w--~vSWS~-sGn~LaVs~GdNkvtlwke~-~~Gkw~~v 294 (299)
T KOG1332|consen 243 EYEPWKKTLLEEF-----PDVVW--RVSWSL-SGNILAVSGGDNKVTLWKEN-VDGKWEEV 294 (299)
T ss_pred ccCcccccccccC-----CcceE--EEEEec-cccEEEEecCCcEEEEEEeC-CCCcEEEc
Confidence 2111111111000 33466 999999 69999999999999999864 34566554
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=7.1e-24 Score=189.07 Aligned_cols=265 Identities=13% Similarity=0.125 Sum_probs=203.4
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.|+|.+..|+.+++||++++||+... .....+ .|..++.+++|.++.+ +++|+.||.|+.+|+.++...
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~---~l~~~~-----~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPAN---SLKLKF-----KHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccch---hhhhhe-----ecCCceeeeeccCCce-EEEeccCceEEEEEecCCcce
Confidence 3579999999999999999999999852 122222 2899999999998654 899999999999988776541
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
..+.|..+|.|+.++ .+.+++|+ |++|++||.........+... ..|.|+..
T Consensus 89 ------------------------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v 143 (323)
T KOG1036|consen 89 ------------------------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV 143 (323)
T ss_pred ------------------------eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEec
Confidence 111599999999999 77899999 999999999875555555433 37777765
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCceEEEee--CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeec
Q 007306 372 LPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 449 (608)
Q Consensus 372 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 449 (608)
+.+ .|++|+.+..|.+||+++.......+ .-.-.++|+++.|++.-+++++-||.|.+=.++..+....+.. .+.
T Consensus 144 ~g~-~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky--aFk 220 (323)
T KOG1036|consen 144 SGN-RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY--AFK 220 (323)
T ss_pred cCC-EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce--eEE
Confidence 433 89999999999999999865433221 2446789999999888899999999999877665422111111 122
Q ss_pred cCC------CCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 450 GLV------PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 450 ~~~------~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.|. ....+|++|+|+|-...|++ |.||.|.+||..+.+.+..+.. ....|.+++|+.||..||.++.
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~--~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK--YETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC--CCCceEEEEeccCCCeEEEEec
Confidence 221 11157999999999999999 6999999999999888888754 3678999999999999999874
No 122
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.1e-24 Score=191.38 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=213.6
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEE
Q 007306 262 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 339 (608)
Q Consensus 262 V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s 339 (608)
..|+.||+.|.+||+|..||.|.|||+.+-.. +.++ .+|-.+|.+++|| |+.|++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------------------ar~l-----saH~~pi~sl~WS~dgr~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------------------ARML-----SAHVRPITSLCWSRDGRKLLT 82 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------------------hhhh-----hccccceeEEEecCCCCEeee
Confidence 78999999999999999999999999866543 1111 1699999999999 999999
Q ss_pred Ee-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeC-----ccccEEEEE
Q 007306 340 AS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLA 411 (608)
Q Consensus 340 ~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~ 411 (608)
++ |..|.+||+..|.+++.++ ...+|+.+.|+|.. ..++.-.+..-.+-++..++.. .+.. -.....+..
T Consensus 83 sS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccccccc
Confidence 99 9999999999999988886 57789999999987 5555555555555555442211 1111 111223346
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC----
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL---- 486 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~---- 486 (608)
|.+.|+++++|...|.+.++|..+.+......+.+ . ..|..+.++..|++++. +.|+.|+.|+++.-
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-----~---~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-----V---QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeech-----h---eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 89999999999999999999999965544433331 1 46889999999999999 79999999998621
Q ss_pred ---c--eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec
Q 007306 487 ---N--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 487 ---~--~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
+ +.+.+..-.....-.+++||.+|.|++.|+.. ..++||....|.+++.+. |..+.. ...+.|+|
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------G~kgE~--l~DV~whp 303 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------GTKGEE--LLDVNWHP 303 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec-------CCchhh--eeeccccc
Confidence 1 11122111123455678999999999988754 789999999999999886 332222 34899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccCCC
Q 007306 561 LEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~ 592 (608)
-...+++- ..|.|+||.....+ .|.+.+|
T Consensus 304 -~rp~i~si-~sg~v~iw~~~~~e-nwsafAP 332 (405)
T KOG1273|consen 304 -VRPIIASI-ASGVVYIWAVVQVE-NWSAFAP 332 (405)
T ss_pred -ceeeeeec-cCCceEEEEeeccc-chhhcCc
Confidence 46677777 78999999997754 5877765
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-23 Score=203.71 Aligned_cols=289 Identities=17% Similarity=0.223 Sum_probs=228.2
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
-..+|.++|||.+.+.||.+-.||.|.||++..+= +....+.++.+..|.+++|+ +..
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w---------------------~~~~vi~g~~drsIE~L~W~e~~R 82 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNW---------------------FLEPVIHGPEDRSIESLAWAEGGR 82 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCc---------------------eeeEEEecCCCCceeeEEEccCCe
Confidence 37899999999999999999999999988775542 22333343567889999999 888
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE--EeeCccccEEEEEE
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAY 412 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~ 412 (608)
|++.+ +|.|.-||+.+++....+....+.|++++.+|.+ .+++|++||.+..++...++... .+....++|.+++|
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 88888 9999999999999999999999999999999999 99999999988888887776543 34445689999999
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceeccccee--eeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCcee
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 489 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~ 489 (608)
+|++..+++|+.||.|++||+.++........+ ....+.. .-|.++.|-.++ .|++| +.|+|.+||...+.++
T Consensus 163 ~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~---~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP---TIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCc---eEEEEEEEeecC-cEEEecCCceEEEEcccCcchh
Confidence 999999999999999999999986644311111 1111111 457788887665 45555 7899999999999999
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
+.+.. |...|.+++..+++.++++++.|+.|.-|...++....... ....++.+.+. +++..+ +.+.+|
T Consensus 239 qS~~~--h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~----~~r~~h~hdvr--s~av~~---~~l~sg 307 (691)
T KOG2048|consen 239 QSHSC--HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN----SRRDLHAHDVR--SMAVIE---NALISG 307 (691)
T ss_pred hhhhh--hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee----ccccCCcccce--eeeeec---ceEEec
Confidence 98875 69999999999999999999999999999888775422211 11123366666 777776 389999
Q ss_pred eCCCcEEEEeCCC
Q 007306 570 LTNGRVHVIEPLE 582 (608)
Q Consensus 570 s~Dg~v~iW~~~~ 582 (608)
+.|+.+.+=....
T Consensus 308 G~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 308 GRDFTLAICSSRE 320 (691)
T ss_pred ceeeEEEEccccc
Confidence 9998887765543
No 124
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=211.21 Aligned_cols=295 Identities=16% Similarity=0.094 Sum_probs=211.6
Q ss_pred EEEEEee---CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 263 VRLIYSH---SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 263 ~~~~fsp---~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
.+..|++ ....|+.+..||.|.++|...... .++...+.... .|...|..+.|. ...|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~f--------------r~ee~~lk~~~---aH~nAifDl~wapge~~l 115 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVF--------------RLEERQLKKPL---AHKNAIFDLKWAPGESLL 115 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhc--------------chhhhhhcccc---cccceeEeeccCCCceeE
Confidence 3466765 334788888999999998865543 11222222111 699999999999 4578
Q ss_pred EEEe-CCcEEEEEcCCCceeeE--ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-----------------
Q 007306 338 FSAS-GGKISIFSLETFQTLAT--FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK----------------- 395 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~----------------- 395 (608)
++++ |.++++||++++++... +.+|.+.|.+++|.|++ .|++|+.||.|.|||++-..
T Consensus 116 VsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 116 VSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred EEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 8888 99999999999988777 88999999999999998 99999999999999987432
Q ss_pred ----------eEEEeeCccccEEE---EEEeCCCCEEEEEcC-CCcEEEEECCCCceecc-cceee-eeccCCCCccceE
Q 007306 396 ----------TKAKLKGHQNRITC---LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCS-KFLHS-FQTGLVPETTIVN 459 (608)
Q Consensus 396 ----------~~~~~~~~~~~v~~---~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~-~~~~~-~~~~~~~~~~~v~ 459 (608)
.+...+.+...|.+ +.+..|...||+++. |+.|+|||++....... .+... -..-|......+.
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01122334555655 667778889999888 99999999987543211 11110 0001110114577
Q ss_pred EEEEcCCCCEEEE-EeCCcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 460 HIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 460 ~v~~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
++.....|.+|++ +.|+.|+.|++.+.. ++..+.+......-..-..+||+.+|++|+.|...++|.+.+.+.-..+
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~ 355 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL 355 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh
Confidence 8888888999888 799999999997643 3333332211222334457899999999999999999999987654433
Q ss_pred eceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 537 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 537 ~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
.. || .+.+++++|.|..-.-+|+|++|-.++||++..+
T Consensus 356 l~------Gh---t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 356 LL------GH---TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hh------Cc---ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 22 44 3446699999977778899999999999999654
No 125
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1e-24 Score=224.93 Aligned_cols=261 Identities=14% Similarity=0.203 Sum_probs=206.2
Q ss_pred CCCcEEEEEEeeCCCEEEEEe--CCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCC
Q 007306 258 FGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 335 (608)
++..|.++..+|||..++||+ .||.++||+.+.-..
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~------------------------------------------ 49 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD------------------------------------------ 49 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc------------------------------------------
Confidence 466799999999999999999 799999997532211
Q ss_pred EEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-------C-----------ce
Q 007306 336 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------K-----------KT 396 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~-------~-----------~~ 396 (608)
....+|..-.+.+.+...|.+.|+|+.|+||| +||+|++|+.|.||+... | +.
T Consensus 50 --------~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~ 121 (942)
T KOG0973|consen 50 --------EKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV 121 (942)
T ss_pred --------hhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeE
Confidence 00011111234556677899999999999999 999999999999998762 1 35
Q ss_pred EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC
Q 007306 397 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 475 (608)
Q Consensus 397 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d 475 (608)
+..+.+|.+.|..++|+|++.++++++.|++|.+||..+. ..+. ...+|. +.|..+.|.|-|+||++ +.|
T Consensus 122 ~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-----~~~~-vl~~H~---s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 122 VSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-----ELLK-VLRGHQ---SLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred EEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-----eeee-eeeccc---ccccceEECCccCeeeeecCC
Confidence 6788999999999999999999999999999999999983 3344 677888 79999999999999999 899
Q ss_pred CcEEEEECCCCceeeeecCCC----CCCCeEEEEEecCCCEEEEEEc----CCeEEEEeCCCCceeEEEeceeeccCCCc
Q 007306 476 GQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELRCQINLTAYAQPGTI 547 (608)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~sg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~g~~ 547 (608)
++|++|++.+....+.+..+- -...+..+.|||||++|++... -..+.|.+-.+-+.-..+. ||+
T Consensus 193 rtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-------GH~ 265 (942)
T KOG0973|consen 193 RTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-------GHS 265 (942)
T ss_pred ceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-------cCC
Confidence 999999987766666665431 1457889999999999998532 3468888887776666655 664
Q ss_pred ccccccEEEEEecC----C--------C----CEEEEEeCCCcEEEEeCCCCcccc
Q 007306 548 SLELYPLVIAAHPL----E--------P----NRIALGLTNGRVHVIEPLESEVEW 587 (608)
Q Consensus 548 ~~~v~~~~v~~sp~----d--------~----~~las~s~Dg~v~iW~~~~~~~~~ 587 (608)
. ++. ++.|+|. . + ..+|+||.|++|-||.....+|..
T Consensus 266 ~-p~e--vvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 266 A-PVE--VVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred C-ceE--EEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 4 444 8999972 1 1 178999999999999998888743
No 126
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=1.7e-22 Score=191.17 Aligned_cols=273 Identities=14% Similarity=0.118 Sum_probs=206.5
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEe-ecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
....|.|.+..++.....+.+.+|+...+ ......- ++.. ....|.|++|.++|+ ++||.++|.|.||+..+..
T Consensus 204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~---~l~k~~~~fek~-ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~ 278 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGKGHLYFWTLRGG---SLVKRQGIFEKR-EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR 278 (626)
T ss_pred EEEEeccCCCcEEEEeCCceEEEEEccCC---ceEEEeeccccc-cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce
Confidence 34689999998888888899999998853 2222211 2222 347899999999998 7999999999998864443
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCc-----------ee---
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-----------TL--- 356 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~-----------~~--- 356 (608)
. .+... .|.+.|.+++.- +..|++|+ |..|..||-.-.+ .+
T Consensus 279 ~---------------------~k~~~--aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 279 I---------------------SKQVH--AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred E---------------------EeEee--ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEE
Confidence 2 11112 499999999998 77777788 9999999832100 00
Q ss_pred --------------------------eEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 357 --------------------------ATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 357 --------------------------~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
....+|....+.++.+|+. ++++++.|+.+++|+ ..++..... ...++.|
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~ 412 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAEC 412 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeE
Confidence 1123667778889999999 999999999999999 344444333 4568899
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 488 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 488 (608)
+.|+|.| .++.|+..|...+.|..+. ..+. +... . .+++.++|+|+|.+|++ +.|+.|+||.+.....
T Consensus 413 ~~fhpsg-~va~Gt~~G~w~V~d~e~~-----~lv~-~~~d-~---~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATGRWFVLDTETQ-----DLVT-IHTD-N---EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred eeccCcc-eEEEeeccceEEEEecccc-----eeEE-EEec-C---CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 9999999 9999999999999999882 2222 3233 2 68999999999999999 5999999999875433
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
........+..+|+.+.||+|++++.+.+-|-.|..|...
T Consensus 482 ~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 3333232346899999999999999999999999999543
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.6e-22 Score=199.04 Aligned_cols=278 Identities=15% Similarity=0.130 Sum_probs=197.1
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEE-EEEeCCCcEEEEecCCCcceeeeccc
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENV 300 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~ 300 (608)
+..+++++.|+.+++||..+ +.+... +.. ...+.+++|+|+|+.+ ++++.++.+.+||..+++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t----~~~~~~-~~~---~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~------- 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT----LEVTRT-FPV---GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV------- 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCC----CceEEE-EEC---CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-------
Confidence 35678999999999999974 333322 322 3346789999999977 5666789999888766543
Q ss_pred ceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEE-e-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-
Q 007306 301 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD- 375 (608)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~- 375 (608)
..... .+ ..+..++|+ ++.++++ . ++.+++||+.+++.+..+.. ...+.+++|+|++
T Consensus 66 --------------~~~~~--~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~ 127 (300)
T TIGR03866 66 --------------IGTLP--SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGK 127 (300)
T ss_pred --------------EEecc--CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCC
Confidence 11111 12 224567788 6666544 4 79999999999888777753 2346789999999
Q ss_pred eEEEEeCCC-cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEE-cCCCcEEEEECCCCceecccceeeeeccCCC
Q 007306 376 LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 453 (608)
Q Consensus 376 ~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 453 (608)
.++++..++ .+.+||..+++...... ....+.+++|+|++++++++ ..++.|.+||+.+++........ ....+.
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~- 204 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFE-IPGVHP- 204 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec-cccccc-
Confidence 888887765 56778998887765543 23356789999999988554 46899999999986432221111 000010
Q ss_pred CccceEEEEEcCCCCEEEE--EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEeCCCC
Q 007306 454 ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTL 530 (608)
Q Consensus 454 ~~~~v~~v~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~ 530 (608)
.......++|+|+++++++ +.++.+.+||.++++.+..+.. ...+.+++|+|+|++|+++ +.+|.|++||+.++
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 0012356889999998665 3567899999998887765532 4578899999999999886 45899999999999
Q ss_pred ceeEEEec
Q 007306 531 ELRCQINL 538 (608)
Q Consensus 531 ~~~~~~~~ 538 (608)
+.+..+..
T Consensus 282 ~~~~~~~~ 289 (300)
T TIGR03866 282 KVIKSIKV 289 (300)
T ss_pred cEEEEEEc
Confidence 98888863
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.9e-24 Score=200.74 Aligned_cols=243 Identities=13% Similarity=0.131 Sum_probs=193.9
Q ss_pred CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 334 GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 334 ~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
+.+++++. ...+.+|.+..........--+++|.|++-+|+| +++.|+..|.|++|.+.+|..+..+.+|-..|+|+
T Consensus 50 ~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 50 NEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEE
Confidence 56788887 4689999987655544333457789999999999 88888899999999999999999999999999999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCC----ceecccceeeeeccCCCCccceEEEEEcCCC--CEEEE-EeCCcEEEEEC
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGW----KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLS-IHEGQIDVYEA 483 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~-~~d~~i~iwd~ 483 (608)
.|+-||.++++|+.||.|.+|++..- ......++. .+.+|. -+|+++...+.| .++++ +.|.++++||+
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~-~f~~Ht---lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLH-IFSDHT---LSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCcccee-eeccCc---ceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 99999999999999999999987431 111235555 677887 689999887653 56666 79999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc--ee----EE--Ee-ceeeccCCCcccccccE
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--LR----CQ--IN-LTAYAQPGTISLELYPL 554 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--~~----~~--~~-~~~~~~~g~~~~~v~~~ 554 (608)
..|..+.++.. ...+.+++.+|-+..++.|+++|.|.+.++..-. .. +. .. .......||.+ ...++
T Consensus 206 S~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-~~~IT 281 (476)
T KOG0646|consen 206 SLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-ESAIT 281 (476)
T ss_pred ccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC-Cccee
Confidence 99999988865 7889999999999999999999999998876432 11 00 00 01112236644 23456
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 555 VIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 555 ~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
|++.+- |+..|++|+.||.|+|||+.+.++
T Consensus 282 cLais~-DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 282 CLAIST-DGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred EEEEec-CccEEEeeCCCCCEEEEecchHHH
Confidence 999998 899999999999999999998776
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.7e-24 Score=202.82 Aligned_cols=249 Identities=16% Similarity=0.178 Sum_probs=193.0
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc----------eeeEecCCCCCeEEEEEcCCC--eEEEEeCCCc
Q 007306 322 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ----------TLATFANPPPIATYFILLPQD--LFAFGFDDSS 385 (608)
Q Consensus 322 ~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~ 385 (608)
.|.+.|+.+.+- ...+++.+ .+.|.|||..+.. +-..+.+|...-..++|++.. .+++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488999999888 55677777 8999999986421 222677888877789999988 9999999999
Q ss_pred EEEEeCCCCc-------eEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccc
Q 007306 386 ILVHCPCTKK-------TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 457 (608)
Q Consensus 386 i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (608)
|.+||+.... +...+.+|...|..++|+| +...+++++.|+.+.+||++++. .++.. ...+|. +.
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---~~~~~-~~~ah~---~~ 274 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---SKPSH-SVKAHS---AE 274 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---CCCcc-cccccC---Cc
Confidence 9999987542 3466889999999999999 55678999999999999999732 22333 455777 79
Q ss_pred eEEEEEcCCCCEEEE-E-eCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCcee
Q 007306 458 VNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELR 533 (608)
Q Consensus 458 v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~ 533 (608)
|.+++|+|-+.++++ + .|++|.+||+++.+ ++.++. +|...|.++.|||+. ..|++++.|+.+.|||+..-...
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e--~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE--GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc--CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999999998766665 4 79999999999765 445554 579999999999965 57888999999999999753222
Q ss_pred EEE------ece-eeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 534 CQI------NLT-AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 534 ~~~------~~~-~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
..- .+. .|.-.|| ... |..++|+|.++-.++|+++|+.+.||++..
T Consensus 353 q~~eda~dgppEllF~HgGH-~~k--V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGH-TAK--VSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCc-ccc--cccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 210 001 1222255 333 559999998888999999999999999974
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.2e-24 Score=197.70 Aligned_cols=284 Identities=14% Similarity=0.199 Sum_probs=221.2
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
..+.|++|.|+|....|++++.||+++||.+..... ..++... -...+|.+.+|. |.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-------------------~~lqS~~--l~~fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-------------------PKLQSIH--LEKFPIQKAEFAPNGH 270 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC-------------------hhheeee--eccCccceeeecCCCc
Confidence 367999999999999999999999999997754432 2222221 145789999999 66
Q ss_pred -EEEEEe-CCcEEEEEcCCCceeeE--ecCCC-CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 336 -HLFSAS-GGKISIFSLETFQTLAT--FANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 336 -~l~s~~-d~~i~vwd~~~~~~~~~--~~~~~-~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
.+++++ ......||+.+.+..+. ..++. ..+....++|++ +|+..+..|.|.+....+++.+..++ -.+.|..
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 777788 78999999998765443 22333 456778899999 99999999999999999999998887 5678999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCC---
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT--- 485 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~--- 485 (608)
++|+.+++.|++.+.+|.|.+||++.. .+++.+..... -.-++++.++++.++|+| ..|.|.|||..+
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~-----~~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQN-----SCLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCc-----ceEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEeccchhhc
Confidence 999999999999999999999999984 34442332211 234678889999999996 668999999653
Q ss_pred ---CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc--CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec
Q 007306 486 ---LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 486 ---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
.+++.++.. -...|+++.|++|++.||.+|. ++.+++-++.+......++.. ..+-| +++|++|+|
T Consensus 422 s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~-n~~vg------~vtc~aFSP 492 (514)
T KOG2055|consen 422 STNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS-NTKVG------HVTCMAFSP 492 (514)
T ss_pred cCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC-CCccc------ceEEEEecC
Confidence 344444432 2678999999999999987775 588999999887765555433 11112 266999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 007306 561 LEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~ 581 (608)
.+.+||.|..+|.|.+|.+.
T Consensus 493 -~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 -NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -CCceEEeecCCCceeeEeec
Confidence 79999999999999999875
No 131
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.9e-24 Score=213.04 Aligned_cols=289 Identities=13% Similarity=0.105 Sum_probs=218.0
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CC
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 335 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~ 335 (608)
.....+++..++-..++.++. ..++|+.+....... ...+....+. .-...+..|.|. .+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~-------~~~~~~k~kq---------n~~~S~~DVkW~~~~~N 101 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSE-------KCNHRFKTKQ---------NKFYSAADVKWGQLYSN 101 (839)
T ss_pred ccccceEeecCCcceeEEecc-cceeeEeeCcccCCc-------ceeeeccccc---------ceeeehhhcccccchhh
Confidence 446677777888877777765 456666665443210 0111110000 112345567787 78
Q ss_pred EEEEEe-CCcEEEEEcCC---CceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 336 HLFSAS-GGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
+|++++ .|.|.+||+.. .+.+..|..|...+.++.|++.. +|++|+.||+|++||++..+...++.+....|+.
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhc
Confidence 999999 99999999987 56677889999999999999988 9999999999999999999999999999999999
Q ss_pred EEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc
Q 007306 410 LAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 487 (608)
Q Consensus 410 ~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~ 487 (608)
|+|+| .+..++++...|.+.+||++... ++.. .+..|. ++|.++.|+|++.+||+ |.|+.|+|||+.+.+
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~----r~~~-k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPD----RCEK-KLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCch----hHHH-Hhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 99999 67889999999999999999854 3433 466788 89999999999999999 599999999997655
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCE-EEEEE--cCCeEEEEeCCCCcee-EEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKC-IYVSC--KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~--~dg~i~iwd~~~~~~~-~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
....... ....++.++.|-|+..+ |++++ .|-.|+|||++..-.. .++. .| .. .++.++|...|.
T Consensus 254 ~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~-------eH-~~--~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 254 AKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL-------EH-TD--SVTGIAWDSGDR 322 (839)
T ss_pred ccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee-------cc-Cc--cccceeccCCCc
Confidence 3322222 13789999999998765 44443 3789999999865432 3332 22 22 245899987678
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 007306 564 NRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~ 583 (608)
..+.+++.||+|..-.++++
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 89999999999876655543
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=3.1e-22 Score=197.07 Aligned_cols=271 Identities=17% Similarity=0.150 Sum_probs=196.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE-EEEe-CCcEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKIS 346 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l-~s~~-d~~i~ 346 (608)
+..+++++.|+.+.+||..+++. ..... .+ ..+.+++|+ ++.+ ++++ ++.|+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~---------------------~~~~~--~~-~~~~~l~~~~dg~~l~~~~~~~~~v~ 56 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV---------------------TRTFP--VG-QRPRGITLSKDGKLLYVCASDSDTIQ 56 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce---------------------EEEEE--CC-CCCCceEECCCCCEEEEEECCCCeEE
Confidence 35678999999999998766543 11111 22 335678898 6665 4555 79999
Q ss_pred EEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC
Q 007306 347 IFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 424 (608)
Q Consensus 347 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 424 (608)
+||+.+++....+..+.. +..++|+|++ .++ +++.++.|++||+.+++.+..+.. ...+.+++|+|+|+++++++.
T Consensus 57 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 57 VIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred EEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEec
Confidence 999999988877765443 4678999999 554 456689999999999887777753 345688999999999998887
Q ss_pred CC-cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCC---C-
Q 007306 425 DA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK---M- 497 (608)
Q Consensus 425 d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~---~- 497 (608)
++ .+.+||..+++. +.....+ ..+..++|+|+++++++ + .++.|++||+.+++.+..+.... +
T Consensus 135 ~~~~~~~~d~~~~~~-----~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 135 TTNMAHFIDTKTYEI-----VDNVLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHP 204 (300)
T ss_pred CCCeEEEEeCCCCeE-----EEEEEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccc
Confidence 65 467789877432 2212222 23567999999998876 4 58999999999988776654211 1
Q ss_pred -CCCeEEEEEecCCCEEEEE-EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE-eCCCc
Q 007306 498 -DLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG-LTNGR 574 (608)
Q Consensus 498 -~~~v~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~-s~Dg~ 574 (608)
......++|+|++++++++ +.++.|.+||..+++....+.. .+.+. +++|+| ++.+|+++ +.+|.
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---------~~~~~--~~~~~~-~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---------GQRVW--QLAFTP-DEKYLLTTNGVSND 272 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---------CCCcc--eEEECC-CCCEEEEEcCCCCe
Confidence 1234568899999986554 4567899999999887655431 22344 899999 78888876 56899
Q ss_pred EEEEeCCCCcccccc
Q 007306 575 VHVIEPLESEVEWGK 589 (608)
Q Consensus 575 v~iW~~~~~~~~~~~ 589 (608)
|++||+.+++.....
T Consensus 273 i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 273 VSVIDVAALKVIKSI 287 (300)
T ss_pred EEEEECCCCcEEEEE
Confidence 999999998875444
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5.1e-23 Score=192.79 Aligned_cols=285 Identities=13% Similarity=0.148 Sum_probs=222.3
Q ss_pred CceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCC-EEEEEeCCCcEEEEecCC
Q 007306 212 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQS 290 (608)
Q Consensus 212 ~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~ 290 (608)
....+.|+|....+.+|+.|++++|+.+++...+ .+..+.| -..+|.+.+|.|+|. .+++++....+..||+.+
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeeee----ccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 3445689999999999999999999999865433 4444434 467999999999999 889999999999888876
Q ss_pred CcceeeecccceeeEEeeCCCCeeeeccccCCC-CCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCe
Q 007306 291 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 366 (608)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v 366 (608)
.+.. +.....++ ...+.....+ +++|+..+ .|.|.+....+++.+.+++ -.+.|
T Consensus 290 ak~~---------------------k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v 347 (514)
T KOG2055|consen 290 AKVT---------------------KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVV 347 (514)
T ss_pred cccc---------------------cccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEE
Confidence 6541 11111122 2345566666 88999999 9999999999999998887 45678
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccE--EEEEEeCCCCEEEEEcCCCcEEEEECCCCc-eeccc
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQLCVWDAVGWK-KLCSK 442 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~-~~~~~ 442 (608)
..++|+.++ .|++++.+|.|++||++...++..+.. .+.| ++++.++++.+||+|+..|.|.|||.++-. ....+
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence 999999999 888888899999999999999988874 2333 466778999999999999999999976521 11234
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEE-E--eCCcEEEEECCCCceeeeecCCC-CCCCeEEEEEecCCCEEEEEEc
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
++.++.. -. ..|+++.|+||+..|+. + ..+.+++-.+.+......+.... .-+.++|++|||.|.++|.|..
T Consensus 427 Pik~~dN-Lt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 427 PIKTVDN-LT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred chhhhhh-hh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 4442222 22 57999999999999987 3 57889999998777666665432 1467999999999999999999
Q ss_pred CCeEEEEeCC
Q 007306 519 SGHVKVFDTS 528 (608)
Q Consensus 519 dg~i~iwd~~ 528 (608)
+|.|.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999875
No 134
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=9.3e-23 Score=200.02 Aligned_cols=336 Identities=15% Similarity=0.142 Sum_probs=243.3
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
..|+|++..+++-+..|..++|...+ +..+.+... -.||.+.|..++|+|.|.+|++.|.|.+-+++-.-..+.
T Consensus 322 ~lw~~n~~~ii~~g~~Gg~hlWkt~d---~~~w~~~~~-iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-- 395 (764)
T KOG1063|consen 322 GLWSPNSNVIIAHGRTGGFHLWKTKD---KTFWTQEPV-ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-- 395 (764)
T ss_pred EEEcCCCCEEEEecccCcEEEEeccC---ccceeeccc-cccccccceeeeecCCCCEEEEeccccceeeeccccccc--
Confidence 46999999999999999999999443 344443222 257999999999999999999999999999875432211
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC--------------------
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET-------------------- 352 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~-------------------- 352 (608)
-|. ++. .++-|....+|++|- ...+++|. ...+|+|+...
T Consensus 396 ----------~wH----Eia---RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~ 458 (764)
T KOG1063|consen 396 ----------EWH----EIA---RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDEL 458 (764)
T ss_pred ----------cee----eec---ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhc
Confidence 122 111 111377788888887 44667776 46778886420
Q ss_pred -----------------------Cc---------------------------------eeeEecCCCCCeEEEEEcCCC-
Q 007306 353 -----------------------FQ---------------------------------TLATFANPPPIATYFILLPQD- 375 (608)
Q Consensus 353 -----------------------~~---------------------------------~~~~~~~~~~~v~~~~~~~~~- 375 (608)
|. .++.+.+|...|++++.+|++
T Consensus 459 p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn 538 (764)
T KOG1063|consen 459 PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN 538 (764)
T ss_pred ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC
Confidence 00 012234788899999999999
Q ss_pred eEEEEeCCC-----cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc
Q 007306 376 LFAFGFDDS-----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 376 ~l~~~~~d~-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
.+|+++... .|++|+..+-..++.+.+|+-.|+.++|+|||++|++.+.|+++.+|......... .... ....
T Consensus 539 liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa-~~k~ 616 (764)
T KOG1063|consen 539 LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFA-CLKA 616 (764)
T ss_pred EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhc-cccc
Confidence 999988654 69999999988888999999999999999999999999999999999885532211 1112 2445
Q ss_pred CCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEec-----CCCEEEEEEcCCeE
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSC-----DGKCIYVSCKSGHV 522 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~-----~~~~l~sg~~dg~i 522 (608)
|. --|.+..|+|++.++++ +.|.+|++|..... +.+..+....+...|+.++|.| .+..++.|-+.|.|
T Consensus 617 Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI 693 (764)
T KOG1063|consen 617 HT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEI 693 (764)
T ss_pred cc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEE
Confidence 66 67899999999999998 69999999999877 5555544445789999999985 23478889999999
Q ss_pred EEEeCCCCceeEEEec----eeeccCCCcccccccEEEEEecCC---------CCEEEEEeCCCcEEEEeCC
Q 007306 523 KVFDTSTLELRCQINL----TAYAQPGTISLELYPLVIAAHPLE---------PNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 523 ~iwd~~~~~~~~~~~~----~~~~~~g~~~~~v~~~~v~~sp~d---------~~~las~s~Dg~v~iW~~~ 581 (608)
.+|....-....+... ........+... ++.+.|.|.- ...|++|++|.++||+++.
T Consensus 694 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a--V~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 694 VLWRRKREHRQVTVGTFNLDTRLCATIGPDSA--VNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EEEecccccccccceeeeeccccccccChHHh--hheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 9999662211111100 000111111333 4489999741 2357999999999999875
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.2e-23 Score=206.74 Aligned_cols=274 Identities=15% Similarity=0.166 Sum_probs=212.4
Q ss_pred ccCCCCceeEeecCCCCeEEEeecCCeEEEeeccCC-CCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEE
Q 007306 207 FNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLI-NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 285 (608)
Q Consensus 207 ~~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~-~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~i 285 (608)
+.+......+.+.|+|++|++++.||.|++|+.... ..|..+.. +...|.+++. ++.+|++|+.+++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-------~g~~v~~ia~--~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-------SGELVSSIAC--YSNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-------cCceeEEEee--cccceEEeeccceEEE
Confidence 334444455689999999999999999999998754 22222221 5677777765 4558999999999999
Q ss_pred EecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCC
Q 007306 286 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANP 362 (608)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~ 362 (608)
|...++.. .+.+. ...-++.+++|+ |++++.|+ |-.|++-++.+....+.+++|
T Consensus 81 y~fps~~~-----------------~~iL~------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh 137 (933)
T KOG1274|consen 81 YKFPSGEE-----------------DTILA------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH 137 (933)
T ss_pred eeCCCCCc-----------------cceee------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence 98766653 11122 255788999999 78999999 889999999999999999999
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-------c-cccEEEEEEeCCCCEEEEEcCCCcEEEEEC
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-------H-QNRITCLAYSLSLNVLVSSGADAQLCVWDA 433 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 433 (608)
.++|.++.++|++ +||+.+.||.|++||+.++.+...+.+ . ...+..++|+|+|..++..+.|+.|++|+.
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSR 217 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEcc
Confidence 9999999999999 999999999999999999987766654 1 345667899999888888999999999999
Q ss_pred CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCE
Q 007306 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC 512 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 512 (608)
.+++... . +...+.. ..+..+.|+|+|+|||++ .+|.|.|||+++... + .....|++++|-|+++-
T Consensus 218 ~~we~~f--~---Lr~~~~s--s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~-----~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 218 KGWELQF--K---LRDKLSS--SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H-----EFKRAVCCEAWKPNANA 284 (933)
T ss_pred CCceehe--e---ecccccc--cceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c-----cccceeEEEecCCCCCe
Confidence 9966422 1 2222221 348999999999999995 899999999987322 1 23678999999999886
Q ss_pred EEEEEcCCeEEEE
Q 007306 513 IYVSCKSGHVKVF 525 (608)
Q Consensus 513 l~sg~~dg~i~iw 525 (608)
+-.-...|...+|
T Consensus 285 it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 285 ITLITALGTLGVS 297 (933)
T ss_pred eEEEeeccccccC
Confidence 6554444444444
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=6.8e-23 Score=181.15 Aligned_cols=281 Identities=14% Similarity=0.142 Sum_probs=207.1
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCC--CC--ceeeEee----cCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEec
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINE--PS--ECRTLLL----PDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKW 288 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~--~~--~~~~~~l----~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~ 288 (608)
-...|+++++|+.||.|.+||++.... .. .+....+ -..+|.-.|..+.|-| |.-.+.+++-|.++++||.
T Consensus 52 d~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDt 131 (397)
T KOG4283|consen 52 DLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDT 131 (397)
T ss_pred ccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeec
Confidence 344689999999999999999986331 10 1111111 1156888999999999 5557788888999999998
Q ss_pred CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEEcCCCceeeEecCC
Q 007306 289 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFANP 362 (608)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~ 362 (608)
.+.+. ..+. ...+.|++-+++ -.++++|. |-.|++.|+.+|.+-.++.+|
T Consensus 132 nTlQ~------------a~~F------------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 132 NTLQE------------AVDF------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred cccee------------eEEe------------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence 87765 2221 134455555665 23566666 789999999999999999999
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEE--------------eeCccccEEEEEEeCCCCEEEEEcCC
Q 007306 363 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAK--------------LKGHQNRITCLAYSLSLNVLVSSGAD 425 (608)
Q Consensus 363 ~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~-~~~~~--------------~~~~~~~v~~~~~~~~~~~l~s~~~d 425 (608)
.+.|.++.|+|.. .|++|+.||.|++||++.. -+... -..|.+.|+.++|+.++.++++.+.|
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 9999999999998 8999999999999999753 22222 22477889999999999999999999
Q ss_pred CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE-EEeCCcEEEEECCCCceeeeecCCCCCCCeEEE
Q 007306 426 AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-SIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 504 (608)
Q Consensus 426 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 504 (608)
..+++|+..+++........ + .|....+.-..+. +.+...++ .-.++.+.++++-.+..++.+.. |...+.+.
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~-~--~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~--h~k~i~c~ 341 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGP-I--IHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST--HLKRINCA 341 (397)
T ss_pred cceEEeecccCccccccccc-c--cccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeec--ccceeeEE
Confidence 99999999887532111111 0 1110001111233 33333333 35779999999999999998875 58889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEeCC
Q 007306 505 TYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 505 ~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
++-|+-+...+|..|+.|+.|-..
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred eecCchhhhhccccCCcccccccc
Confidence 999999999999999999999873
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.4e-25 Score=218.93 Aligned_cols=229 Identities=14% Similarity=0.209 Sum_probs=202.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
.|...|.++..- ++.+++|+ |..+.+|.+.....+..+.+|..+|.++.|+++. .|++|+.+|+|++||+..++.+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 488888888866 78899999 8899999998888888899999999999999999 9999999999999999999999
Q ss_pred EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCC
Q 007306 398 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 476 (608)
Q Consensus 398 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~ 476 (608)
+++.+|...+.++.|+|-+.+.++|+.|+.+++||.+. ..+.. .+.+|. ..+..+.|+|+|++++.+ .|.
T Consensus 106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-----~Gc~~-~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-----KGCSH-TYKSHT---RVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhhccccCcceeeeccceEEeccccccccceehhhhc-----cCcee-eecCCc---ceeEEEeecCCCceeeccCCcc
Confidence 99999999999999999999999999999999999986 24555 566677 688999999999999995 779
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEE
Q 007306 477 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 477 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
.++|||...|+....|.. |.+.+.++.|+|..-++++|+.|++|++||+++.+.+....+. ... +.+.
T Consensus 177 tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--------~~~--v~~~ 244 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--------TDG--VRSL 244 (825)
T ss_pred eeeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--------cCC--ceee
Confidence 999999999999999975 6899999999999999999999999999999998877765432 223 4499
Q ss_pred EEecCCCCEEEEEeCC
Q 007306 557 AAHPLEPNRIALGLTN 572 (608)
Q Consensus 557 ~~sp~d~~~las~s~D 572 (608)
+|+| ++..+++|..+
T Consensus 245 ~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 245 AFNP-DGKIVLSGEQI 259 (825)
T ss_pred eecC-CceeeecCchh
Confidence 9999 78888888655
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.92 E-value=6.8e-23 Score=184.02 Aligned_cols=291 Identities=14% Similarity=0.130 Sum_probs=209.8
Q ss_pred CCCcEEEEEEee----CC-CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE
Q 007306 258 FGGRVVRLIYSH----SG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 332 (608)
Q Consensus 258 h~~~V~~~~fsp----~g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 332 (608)
|..+|..++|++ +. ..++++| .+.+.+|+...... -..++......|......++|
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~------------------ir~lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG------------------IRLLQSYADEDHDESFYTCSW 97 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc------------------eeeeeeccCCCCCcceEEEEE
Confidence 889999999995 22 3444444 46777777654431 012222222247788888899
Q ss_pred e------CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEee--
Q 007306 333 R------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-- 401 (608)
Q Consensus 333 s------~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~-- 401 (608)
+ +.++|.++ -|.|+|.|+.++++...+.+|...|+.+.+.|+. ++++++.|.+|++|++++..++..+-
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 8 23778888 8999999999999999999999999999999999 89999999999999999999998774
Q ss_pred -CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec-------------cccee---------eeeccCCCCccce
Q 007306 402 -GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-------------SKFLH---------SFQTGLVPETTIV 458 (608)
Q Consensus 402 -~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-------------~~~~~---------~~~~~~~~~~~~v 458 (608)
+|.+.|.++.|+++|.++++++.|.++++|++...+... ..++. +...-|. ..|
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr---nyV 254 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR---NYV 254 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc---chH
Confidence 599999999999999999999999999999998532110 00011 0111222 344
Q ss_pred EEEEEcCCCCEEEE-EeCCcEEEEEC-CCCce-------------eeeecCCCCCCCeEEEE--EecCCCEEEEEEcCCe
Q 007306 459 NHIQFHPDQIHLLS-IHEGQIDVYEA-PTLNH-------------TSQLVPDKMDLPITYAT--YSCDGKCIYVSCKSGH 521 (608)
Q Consensus 459 ~~v~~sp~~~~l~~-~~d~~i~iwd~-~~~~~-------------~~~~~~~~~~~~v~~~~--~s~~~~~l~sg~~dg~ 521 (608)
-|+.|- |.++++ +.++.|..|.. +-++. +.++..+ ...|+-+. |.|-+++||.|...|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~--~c~iWfirf~~d~~~~~la~gnq~g~ 330 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP--MCDIWFIRFAFDPWQKMLALGNQSGK 330 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC--ccceEEEEEeecHHHHHHhhccCCCc
Confidence 455554 577888 78899999987 21111 2223222 34455554 5577899999999999
Q ss_pred EEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 522 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 522 i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
|++||++..++...-+.. ... ....|. ..+|+. |+.+|+..++|++|.-||..
T Consensus 331 v~vwdL~~~ep~~~ttl~-~s~---~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 331 VYVWDLDNNEPPKCTTLT-HSK---SGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEECCCCCCccCceEE-ecc---ccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999987764221111 000 133344 899999 89999999999999999864
No 139
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.6e-23 Score=193.57 Aligned_cols=233 Identities=18% Similarity=0.202 Sum_probs=186.5
Q ss_pred CEEEEEeC-CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 007306 272 DFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 347 (608)
Q Consensus 272 ~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~v 347 (608)
.|++++.. ...+.+|.+..... ..+.. --.++|.|++-+ |.+|+.|. .|.+++
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~--------------------~~q~~---v~Pg~v~al~s~n~G~~l~ag~i~g~lYl 107 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQ--------------------VVQYI---VLPGPVHALASSNLGYFLLAGTISGNLYL 107 (476)
T ss_pred hheeeecccCccccccccCchhh--------------------hhhhc---ccccceeeeecCCCceEEEeecccCcEEE
Confidence 57777665 45778887755543 00111 145789999888 88888887 999999
Q ss_pred EEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---------CCceEEEeeCccccEEEEEEeCC--
Q 007306 348 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC---------TKKTKAKLKGHQNRITCLAYSLS-- 415 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~-- 415 (608)
|.+.+|..+..+..|-..|+|+.|+.|| +|++|+.||.|.+|++. +-+++..|..|.-+|+++...+.
T Consensus 108 WelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~ 187 (476)
T KOG0646|consen 108 WELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGT 187 (476)
T ss_pred EEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCc
Confidence 9999999999999999999999999999 99999999999999863 23567889999999999988764
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCc-------
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------- 487 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~------- 487 (608)
..++++++.|.++++||+..+... .++... ..+.+++++|-++.+++| .+|.|.+.++....
T Consensus 188 ~~rl~TaS~D~t~k~wdlS~g~LL-----lti~fp-----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 188 NARLYTASEDRTIKLWDLSLGVLL-----LTITFP-----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred cceEEEecCCceEEEEEeccceee-----EEEecC-----CcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc
Confidence 357999999999999999986432 222222 579999999999999995 89999988864322
Q ss_pred ---------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 488 ---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 488 ---------~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+..+.++.....|++++++-||..|++|+.||.|.|||+.+.+++.++.
T Consensus 258 ~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 258 QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 23344443223499999999999999999999999999999998888775
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1e-23 Score=209.30 Aligned_cols=284 Identities=13% Similarity=0.188 Sum_probs=211.7
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCC-CCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcc
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN-SFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~-~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
++..++-..++.++. ...+++.+........|... .... .-.-.+..|+|+. +.++|||++.+|.|.+||+.....
T Consensus 45 Is~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~-~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r 122 (839)
T KOG0269|consen 45 ISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHR-FKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR 122 (839)
T ss_pred EeecCCcceeEEecc-cceeeEeeCcccCCcceeee-cccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc
Confidence 356677777777765 44666666532222222221 0000 0112345567764 567999999999999999876211
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYF 369 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 369 (608)
...+ ..+. .|...++++.|+ .++|++|+ ||+|++||+...+...++.+....|..+
T Consensus 123 ------------------nk~l-~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV 182 (839)
T KOG0269|consen 123 ------------------NKLL-TVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDV 182 (839)
T ss_pred ------------------chhh-hHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhce
Confidence 0000 0112 599999999999 78999999 9999999999999999999989999999
Q ss_pred EEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee
Q 007306 370 ILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 370 ~~~~~~--~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 446 (608)
.|+|.. .|+++.+.|.+.+||++.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+|||..+.+......+.
T Consensus 183 ~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn- 261 (839)
T KOG0269|consen 183 KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN- 261 (839)
T ss_pred eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-
Confidence 999976 9999999999999999865 566778899999999999999999999999999999999875543333333
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEE-E---eCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCC
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSG 520 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~-~---~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg 520 (608)
.. .+|..+.|-|...+.++ + .|-.|+|||++..- +..++. .|...++.++|.. |...+.+++.||
T Consensus 262 --Ti-----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 262 --TI-----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred --ec-----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCcc
Confidence 22 57999999999766554 3 67899999997533 344554 4799999999975 567888999999
Q ss_pred eEEEEeCCCCc
Q 007306 521 HVKVFDTSTLE 531 (608)
Q Consensus 521 ~i~iwd~~~~~ 531 (608)
.|..-..+++.
T Consensus 333 tv~qh~~knat 343 (839)
T KOG0269|consen 333 TVLQHLFKNAT 343 (839)
T ss_pred HHHHhhhhccc
Confidence 88776665543
No 141
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3e-22 Score=178.40 Aligned_cols=250 Identities=11% Similarity=0.166 Sum_probs=185.4
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+-|.++.|.+-|+++|+|+.|++++|||..++.. -|..... -. .|.+.|..|.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~------------~W~~Ts~-Wr------ah~~Si~rV~WAhP 70 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG------------TWSCTSS-WR------AHDGSIWRVVWAHP 70 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC------------ceEEeee-EE------ecCCcEEEEEecCc
Confidence 45999999999999999999999999999999755543 2332111 11 599999999998
Q ss_pred --CCEEEEEe-CCcEEEEEcC---------CCceeeEecCCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCc---
Q 007306 334 --GSHLFSAS-GGKISIFSLE---------TFQTLATFANPPPIATYFILLPQD---LFAFGFDDSSILVHCPCTKK--- 395 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~~~--- 395 (608)
|+.+|+|+ |+++.||.-. ......++......|+.+.|.|.. .+++++.||.++||+...--
T Consensus 71 EfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 71 EFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred cccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 99999999 9999999752 122345566777899999999975 99999999999999865432
Q ss_pred ---eEEEee-------CccccEEEEEEeCC---CCEEEEEcCC-----CcEEEEECCCCceecccceeeeeccCCCCccc
Q 007306 396 ---TKAKLK-------GHQNRITCLAYSLS---LNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 457 (608)
Q Consensus 396 ---~~~~~~-------~~~~~v~~~~~~~~---~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (608)
....++ .+..+..|+.|+|. ..+|+.|+.+ +.+++|........ ...+. ...+|. .+
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK-w~kva-~L~d~~---dp 225 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK-WLKVA-ELPDHT---DP 225 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce-eeeeh-hcCCCC---Cc
Confidence 222222 35567889999973 4567877765 47888876553211 22333 233676 79
Q ss_pred eEEEEEcCCC----CEEEE-EeCCcEEEEECCCCc-----------------eeeeec-CCCCCCCeEEEEEecCCCEEE
Q 007306 458 VNHIQFHPDQ----IHLLS-IHEGQIDVYEAPTLN-----------------HTSQLV-PDKMDLPITYATYSCDGKCIY 514 (608)
Q Consensus 458 v~~v~~sp~~----~~l~~-~~d~~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~s~~~~~l~ 514 (608)
|++++|.|+- ..|++ +.|| |+||.+.... .+..+. ..+|++.|+++.|+-.|..|+
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEe
Confidence 9999999972 45666 5788 9999986311 111111 235899999999999999999
Q ss_pred EEEcCCeEEEEeCCCC
Q 007306 515 VSCKSGHVKVFDTSTL 530 (608)
Q Consensus 515 sg~~dg~i~iwd~~~~ 530 (608)
+.+.||.|++|...-.
T Consensus 305 StGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 305 STGDDGCVRLWKANYN 320 (361)
T ss_pred ecCCCceeeehhhhhh
Confidence 9999999999987643
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=8.3e-23 Score=192.69 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=215.6
Q ss_pred EEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe--CCCcEEEEecCCCcceeeecccce
Q 007306 225 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT--QTATHKLWKWQSNKQSLEEENVNM 302 (608)
Q Consensus 225 l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s--~dg~i~iw~~~~~~~~~~~~~~~~ 302 (608)
|-.++...++++||+.+.....++...+ ....+.++.|+.... |++++ .|..+++|.-...
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~----------- 67 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK----------- 67 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccce-EEEeecCCceeEEEecccCC-----------
Confidence 3445556679999998754444554432 234599999998765 44444 4778888854332
Q ss_pred eeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE
Q 007306 303 ESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA 378 (608)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~ 378 (608)
++++...... ....-.|++.. ..++++|+ .+.|+|||+....+.+.++.|...|+++.++-.+ +||
T Consensus 68 --------~~~Vp~~~k~--~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 68 --------TPEVPRVRKL--TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA 137 (673)
T ss_pred --------CCccceeecc--ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE
Confidence 1111111111 11133344433 67899999 9999999999888888999999999999999999 999
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeCc-cccEEEEEEeCCCCE-EEEEcCCCcEEEEECCCCceecccceeeeeccCCCCcc
Q 007306 379 FGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 456 (608)
Q Consensus 379 ~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 456 (608)
+++..|.|.|..+.++.....|... ...|+-+.|+|..+. |.+++.+|.|.+||+... .++......|. .
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-----sp~~~~~~~Hs---A 209 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-----SPIFHASEAHS---A 209 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-----Ccccchhhhcc---C
Confidence 9999999999999999887777654 345668899997665 677899999999999883 34444667787 6
Q ss_pred ceEEEEEcCCCCEEEE--EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC-cee
Q 007306 457 IVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELR 533 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~ 533 (608)
+...|+|+|....|++ |.|..|.+||....+....+.. ..+...++|+++|.+|+.|+..|.|+.||++.. .++
T Consensus 210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 8899999998766665 7999999999998887777754 788999999999999999999999999999864 344
Q ss_pred EEEeceeeccCCCcccccccEEEEEec
Q 007306 534 CQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 534 ~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
.++. .| +.. |++++|-|
T Consensus 287 ~v~s-------ah-~~s--Vt~vafq~ 303 (673)
T KOG4378|consen 287 AVRS-------AH-DAS--VTRVAFQP 303 (673)
T ss_pred eEee-------ec-ccc--eeEEEeee
Confidence 4443 23 333 55999988
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=2.2e-22 Score=188.44 Aligned_cols=292 Identities=17% Similarity=0.226 Sum_probs=212.6
Q ss_pred CCCcEEEEEEeeCC--CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 258 FGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g--~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
|..+|++++|+|.. +.+|+|..-|+|-+||+.+.+. | .++..+- ..|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------------d-~d~v~~f----~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------------D-KDGVYLF----TPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------------c-cCceEEe----ccCCccccceEecCC
Confidence 78999999999965 4788888899999999964433 1 1121111 1599999999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCceeeEecC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEeeCccccE
Q 007306 334 -GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 407 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v 407 (608)
...+++.+ ||+|++-|++++..-..+.. ....+..+.|+.+. .++.+..=|...+||++++.. ...+.-|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 45777777 99999999987654433333 45566778888888 777777777999999998754 56677788899
Q ss_pred EEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECC-
Q 007306 408 TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP- 484 (608)
Q Consensus 408 ~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~- 484 (608)
.+++++|. ..+|++++.|++.++||++.-.....-.+. .-.|. -.|.+..|||++-.|++ +.|+.|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls--t~~Hr---rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS--TLPHR---RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCccee--ccccc---ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 99999995 456999999999999999874433321233 22444 58999999999777777 899999999983
Q ss_pred ---CCceeeeecCCC-CCC--CeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEE
Q 007306 485 ---TLNHTSQLVPDK-MDL--PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 558 (608)
Q Consensus 485 ---~~~~~~~~~~~~-~~~--~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 558 (608)
...+..++.-.. +.. ......|.|+..++++|-.-..|-|+|-..++.+..+-.. ....|. .-..|
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P-------~~~tI~-~vn~~ 472 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP-------ESSTIP-SVNEF 472 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc-------cccccc-cceee
Confidence 334444443211 112 2345789999999999999999999999999877765321 111222 14589
Q ss_pred ecCCCC-EEEEEeCCCcEEEEeCCC
Q 007306 559 HPLEPN-RIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 559 sp~d~~-~las~s~Dg~v~iW~~~~ 582 (608)
||. +. ++|.++..|.|+||.-..
T Consensus 473 HP~-~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 473 HPM-RDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred ccc-ccceeccCCccceEEEEecCC
Confidence 994 55 555555778999987543
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-21 Score=174.66 Aligned_cols=254 Identities=12% Similarity=0.112 Sum_probs=185.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC----CceeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCP 391 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~ 391 (608)
+|.+-|.++.|. |+.+++|+ |++|+|||... ..+....+.|.+.|..+.|.+- | .+|+++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 699999999999 99999999 99999999643 3566677899999999999664 4 8999999999999974
Q ss_pred CC---------CceEEEeeCccccEEEEEEeC--CCCEEEEEcCCCcEEEEECCCCceecccceee-------eeccCCC
Q 007306 392 CT---------KKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------FQTGLVP 453 (608)
Q Consensus 392 ~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------~~~~~~~ 453 (608)
.. -....++....+.|+++.|.| -|-.|++++.||.+++|+.-..-....-.++. .+..+.
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~- 169 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK- 169 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc-
Confidence 21 122345566778999999999 46789999999999999876532222222211 111222
Q ss_pred CccceEEEEEcCC---CCEEEEEeCC------cEEEEECCCC--ceeeeecCCCCCCCeEEEEEecCC----CEEEEEEc
Q 007306 454 ETTIVNHIQFHPD---QIHLLSIHEG------QIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCK 518 (608)
Q Consensus 454 ~~~~v~~v~~sp~---~~~l~~~~d~------~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~----~~l~sg~~ 518 (608)
.+..|+.|+|. ..+|++|.+. .++||....+ +..+.-...+|..+|+.++|.|+- ..||+++.
T Consensus 170 --~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 170 --QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred --CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 46788999986 3677777655 7899986543 233332334689999999999863 57999999
Q ss_pred CCeEEEEeCCCC------------ceeEEEeceee-ccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 519 SGHVKVFDTSTL------------ELRCQINLTAY-AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 519 dg~i~iwd~~~~------------~~~~~~~~~~~-~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
|| |+||++... .....+..... ...+| .+.++ .+.|+- -|..|++.|+||.||+|...-.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VW--rv~wNm-tGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVW--RVRWNM-TGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceE--EEEEee-eeeEEeecCCCceeeehhhhhh
Confidence 99 999998741 11122221111 12344 66678 999999 5999999999999999987543
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.9e-22 Score=176.93 Aligned_cols=277 Identities=11% Similarity=0.041 Sum_probs=205.6
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.|++-|.+||.|..||.|.|||+.+ ..+... | .+|..+|.+++||+||+.|+|+|.|..|.+||+..+....
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~T----~~iar~-l--saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFDT----FRIARM-L--SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEccc----cchhhh-h--hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee
Confidence 47999999999999999999999984 222221 3 3499999999999999999999999999999987776521
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEec-CCC----CCe
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFA-NPP----PIA 366 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~----~~v 366 (608)
. . ...++|+.+.|. .+..+++- +..-.+-++..++.. .+. ... ...
T Consensus 102 r---------------------i---rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 102 R---------------------I---RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSA 156 (405)
T ss_pred E---------------------E---EccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCcccccccc
Confidence 1 1 256788888888 33333333 655555555442211 111 111 112
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcc-ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCC-------c
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADAQLCVWDAVGW-------K 437 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-------~ 437 (608)
.+..|.+.| +|++|...|.+.++|..+-+++..++-.. ..|..+.++..|+.|+.-+.|+.|+.|+++.- +
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e 236 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGE 236 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCC
Confidence 344688899 99999999999999999999998887655 78899999999999999999999999998731 1
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 515 (608)
....+.++.+... ..=.+++|+.+|.|++++ .-..++||....|.+++.+.+.. ......+.|+|-...+++
T Consensus 237 ~e~~~K~qDvVNk-----~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k-gE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 237 VEPEHKLQDVVNK-----LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK-GEELLDVNWHPVRPIIAS 310 (405)
T ss_pred cChhHHHHHHHhh-----hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc-hhheeecccccceeeeee
Confidence 1111112211111 234578999999999984 55689999999999999887642 467888999999988888
Q ss_pred EEcCCeEEEEeCCCCc
Q 007306 516 SCKSGHVKVFDTSTLE 531 (608)
Q Consensus 516 g~~dg~i~iwd~~~~~ 531 (608)
- ..|.|+||....-.
T Consensus 311 i-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 311 I-ASGVVYIWAVVQVE 325 (405)
T ss_pred c-cCCceEEEEeeccc
Confidence 7 67999999876543
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.1e-24 Score=211.23 Aligned_cols=252 Identities=18% Similarity=0.201 Sum_probs=212.6
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccc
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
+.++.....+-.+++||+.. .. .|...|.|+..-..++.+++|+.|..+.+|.+.....
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~-------~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-------- 62 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FV-------AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-------- 62 (825)
T ss_pred ccccceeeeeeccccccchh------hh-------hhhhhhceeeeeccceeeccCCCceeeccccccCCch--------
Confidence 34455556666788898753 21 2888999999877889999999999999997754432
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eE
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF 377 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 377 (608)
.. . ..+|..+|.++.|+ ..+|++|+ +|+|++||++.++.++++.+|...+.++.|+|-+ ++
T Consensus 63 -------i~-----S---~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~ 127 (825)
T KOG0267|consen 63 -------IT-----S---LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF 127 (825)
T ss_pred -------hh-----e---eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe
Confidence 11 0 11799999999999 56777777 9999999999999999999999999999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccc
Q 007306 378 AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 457 (608)
Q Consensus 378 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (608)
+.|+.|+.+++||.+..-+.+.+.+|...|.++.|+|+|+++++++.|.++++||+..++ .+. .+.+|. +.
T Consensus 128 a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk-----~~~-ef~~~e---~~ 198 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK-----LSK-EFKSHE---GK 198 (825)
T ss_pred ccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc-----ccc-cccccc---cc
Confidence 999999999999999888999999999999999999999999999999999999998843 333 456676 78
Q ss_pred eEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 007306 458 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 520 (608)
Q Consensus 458 v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg 520 (608)
+.++.|+|..-+++. |.|+++++||+++.+.+...... ...|.+.+|+|++..+++|..+.
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchhh
Confidence 999999998877777 59999999999998888777543 78899999999999999887653
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=175.97 Aligned_cols=276 Identities=14% Similarity=0.138 Sum_probs=195.5
Q ss_pred EEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeee----ccccCCCCCCeEEEEEe----
Q 007306 262 VVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMT----NDIAADPKDSISCFALR---- 333 (608)
Q Consensus 262 V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~v~~s---- 333 (608)
...+.|||||..|++-+.|..+.+|++..... +.+++.... ..+.-.....|...+|.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dly--------------s~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLY--------------SKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhc--------------ccCCCCccccccceeEEeccCCEEEEEEeeeccc
Confidence 44678999999999999999999999865533 222111000 00000123455655554
Q ss_pred -----CCEEEEEe-CCcEEEEEcCCCceeeEecC--CCC---CeEEEEEcCCC-eEEEEeCCCcEEEEeC-CCCceEEEe
Q 007306 334 -----GSHLFSAS-GGKISIFSLETFQTLATFAN--PPP---IATYFILLPQD-LFAFGFDDSSILVHCP-CTKKTKAKL 400 (608)
Q Consensus 334 -----~~~l~s~~-d~~i~vwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~-~l~~~~~d~~i~vwd~-~~~~~~~~~ 400 (608)
.+++++.+ +.-|++||.-+|+....+.+ |.. ...+++|+||| +|++|. .+.|++||+ +.|+....+
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcch
Confidence 34677777 99999999999999888764 322 34689999999 877765 779999998 666432221
Q ss_pred -------eCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 401 -------KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 401 -------~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.+..+-+.+++|+| +.+.++.|+...++-+|.-.. ..++. +..+|. +.|+.++|.++|..|++
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-----~~pl~-llggh~---gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-----RRPLQ-LLGGHG---GGVTHLQWCEDGNKLFS 267 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-----CCcee-eecccC---CCeeeEEeccCcCeecc
Confidence 12367788999999 455899999988888887666 35666 566888 89999999999999999
Q ss_pred E--eCCcEEEEECCCC-ceeeeecCCCC-CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC-CceeEEEeceeeccCCCc
Q 007306 473 I--HEGQIDVYEAPTL-NHTSQLVPDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTI 547 (608)
Q Consensus 473 ~--~d~~i~iwd~~~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~g~~ 547 (608)
| .+..|..||++.. .++..+..+.. ...-.-....|++++|++|+.||.|++||+.+ |.....+...
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-------- 339 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-------- 339 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--------
Confidence 5 6889999999853 34444432211 22222344569999999999999999999998 6645544322
Q ss_pred ccccccEEEEEecCCCCEEEEEeCC
Q 007306 548 SLELYPLVIAAHPLEPNRIALGLTN 572 (608)
Q Consensus 548 ~~~v~~~~v~~sp~d~~~las~s~D 572 (608)
+..++ .|+++| --.++|+++..
T Consensus 340 sd~vN--gvslnP-~mpilatssGq 361 (406)
T KOG2919|consen 340 SDTVN--GVSLNP-IMPILATSSGQ 361 (406)
T ss_pred ccccc--ceecCc-ccceeeeccCc
Confidence 44444 999999 57788888754
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.2e-21 Score=189.00 Aligned_cols=287 Identities=14% Similarity=0.191 Sum_probs=205.4
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.||++.|.+++..|.|.+|++|+.||+++||.+.++.++.. . ...+.|.||+|+
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~---------------------~---~~d~~I~~vaw~P~ 452 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT---------------------V---QFDSEIRSVAWNPL 452 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE---------------------E---eecceeEEEEecCC
Confidence 56999999999999999999999999999998888776322 1 133456666666
Q ss_pred CC--EEEEEeCCcE---------------------------------EEEEcCCC----ceeeEecCCCCCeEEEEEcCC
Q 007306 334 GS--HLFSASGGKI---------------------------------SIFSLETF----QTLATFANPPPIATYFILLPQ 374 (608)
Q Consensus 334 ~~--~l~s~~d~~i---------------------------------~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~ 374 (608)
+. .||++-++.+ ..|.-... .-++..-.|...|..+.|+..
T Consensus 453 ~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 453 SDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred CCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 11 2333223333 33432210 012233357788999999999
Q ss_pred C-eEEEEeCC---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc
Q 007306 375 D-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 375 ~-~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
| +|++...+ ..|.|+++........|+...+.|.++.|+|...+|++++ ...|++||+...+ .++.+..+
T Consensus 533 GDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqe-----lvKkL~tg 606 (733)
T KOG0650|consen 533 GDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQE-----LVKKLLTG 606 (733)
T ss_pred CceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHH-----HHHHHhcC
Confidence 9 88887654 4799999988877777766778899999999988888776 5789999998732 33323334
Q ss_pred CCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
- ..|.+++++|.|..|++ +.|+.+..||+.-. ++.+++.. |...+++++|++.-.++++|+.||++.|+.-.
T Consensus 607 ~----kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 607 S----KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred C----eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 3 37999999999988888 59999999999744 45666653 68999999999999999999999999998743
Q ss_pred CCc-e-eEEEeceeeccCCCcc-cccccEEEEEecCCCCEEEEEeCCCcEEEEe
Q 007306 529 TLE-L-RCQINLTAYAQPGTIS-LELYPLVIAAHPLEPNRIALGLTNGRVHVIE 579 (608)
Q Consensus 529 ~~~-~-~~~~~~~~~~~~g~~~-~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~ 579 (608)
-.. + ..-+........||.. ...-++.+.||| ...+|.+++.||+|++|.
T Consensus 681 VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 681 VYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eehhhhcCCceEeeeeccCceeecccceEeecccC-CCceEEecCCCceEEeeC
Confidence 111 0 0000001111225422 123367889999 688999999999999983
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.2e-21 Score=178.74 Aligned_cols=233 Identities=14% Similarity=0.134 Sum_probs=179.8
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc---ee------------------eEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQ---TL------------------ATFANPPPIATYFILLPQD--LFAFGFDDSSILVH 389 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~---~~------------------~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vw 389 (608)
|+++|.|+ |..|.|||+.--. +. ..-.+|+..|.+++|+..- .||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 67999999 9999999985211 00 0122678888889998876 99999999999999
Q ss_pred eCCCCceEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 390 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 390 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
|+.+|++...+..|...|.++.|+| ....|++|+.|++|.+.|.+.... .....+ +. +.|-.++|.|...
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-s~~~wk--~~------g~VEkv~w~~~se 342 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-SGKEWK--FD------GEVEKVAWDPHSE 342 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-cCceEE--ec------cceEEEEecCCCc
Confidence 9999999999999999999999999 567899999999999999995221 112222 11 5788999999875
Q ss_pred EEEE-E-eCCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccC
Q 007306 469 HLLS-I-HEGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 544 (608)
Q Consensus 469 ~l~~-~-~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 544 (608)
..+. + .||.++-+|++.. +++.++.. |.++|.++++++. -.++++++.|+.|++|++............ +.
T Consensus 343 ~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~-~~-- 417 (463)
T KOG0270|consen 343 NSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS-FK-- 417 (463)
T ss_pred eeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc-cc--
Confidence 5444 4 8899999999864 78888765 7999999999864 457889999999999999765443222110 00
Q ss_pred CCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 545 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 545 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
-+... |.++.|+....+|.|+..+.++|||+.+..+
T Consensus 418 ---~~rl~--c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 418 ---LGRLH--CFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ---cccee--ecccCCCcceEEEecCccceEEEeecccChh
Confidence 11122 7788886677899999999999999988765
No 150
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6e-21 Score=184.29 Aligned_cols=291 Identities=12% Similarity=0.111 Sum_probs=215.9
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCC--EEEEEeCCCcEEEEecCCCc
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~--~l~s~s~dg~i~iw~~~~~~ 292 (608)
.++..|.|.+|++|+.||+|+||.+.+ +.|..... -.+.|.|++|+|.+. .||++-.+ .+-|-+..-+.
T Consensus 405 ~iSvdp~G~wlasGsdDGtvriWEi~T----gRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~ 475 (733)
T KOG0650|consen 405 SISVDPSGEWLASGSDDGTVRIWEIAT----GRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGD 475 (733)
T ss_pred EEEecCCcceeeecCCCCcEEEEEeec----ceEEEEEe----ecceeEEEEecCCCCceeEEEEecC-ceEEeCccccc
Confidence 357889999999999999999999994 66655432 367999999999775 34444333 35555443331
Q ss_pred ceee---------e---cccceeeEEeeCCCC---e-eeeccccCCCCCCeEEEEEe--CCEEEEEe-C---CcEEEEEc
Q 007306 293 QSLE---------E---ENVNMESQLYQPSSK---L-VMTNDIAADPKDSISCFALR--GSHLFSAS-G---GKISIFSL 350 (608)
Q Consensus 293 ~~~~---------~---~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d---~~i~vwd~ 350 (608)
.+.. . ..-...+..|..... + -+...+ .|...|..+.|+ |.||++.. + ..|.|.++
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I--~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI--KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE--ecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1110 0 111123457765421 1 011112 489999999999 99999987 4 47899999
Q ss_pred CCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEE
Q 007306 351 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 429 (608)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 429 (608)
........|+...+.|.++.|+|.. ++++++ -..|++||+..+..++.+......|..++.+|.|..|+.|+.|+.++
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 8877777777777889999999999 888777 46899999998888888777778899999999999999999999999
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECC-------C--CceeeeecCCCC--
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP-------T--LNHTSQLVPDKM-- 497 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~-------~--~~~~~~~~~~~~-- 497 (608)
.+|+.-.. ++.+ ....|. ..+++++|++.-.+++++ .||++.||--. + --+++.+.++..
T Consensus 633 WfDldlss----kPyk-~lr~H~---~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 633 WFDLDLSS----KPYK-TLRLHE---KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred EEEcccCc----chhH-Hhhhhh---hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 99998632 4555 444566 689999999999999996 66999888532 1 123444543211
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 498 DLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 498 ~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
...|..+.|+|...+|++++.||+|++|
T Consensus 705 ~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccceEeecccCCCceEEecCCCceEEee
Confidence 3458899999999999999999999998
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.4e-21 Score=175.46 Aligned_cols=244 Identities=18% Similarity=0.216 Sum_probs=185.7
Q ss_pred CCCCCeEEEEEe--CC--EEEEEe-CCcEEEEEcCC----------------CceeeEecCCCCCeEEEEEcCCC--eEE
Q 007306 322 DPKDSISCFALR--GS--HLFSAS-GGKISIFSLET----------------FQTLATFANPPPIATYFILLPQD--LFA 378 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~--~l~s~~-d~~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~--~l~ 378 (608)
.|.+.++.+.-+ ++ +.++-+ .|.|.||++.. .+++.++.+|...=+.++|||-. .++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 477777777776 44 444445 69999999842 35677888999888999999955 899
Q ss_pred EEeCCCcEEEEeCCCCceE---EEeeCccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCC
Q 007306 379 FGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 379 ~~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 454 (608)
+|..-+.|++|...+|... ..|.+|...|-.++|+|. ...|++++-||+|+|||++.+... .++. ...|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~~~--~kAh~-- 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AAVS--TKAHN-- 302 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ceeE--eeccC--
Confidence 9999999999999887543 456779999999999995 457999999999999999986432 2222 25666
Q ss_pred ccceEEEEEcCCCCEEEEE-eCCcEEEEECCC---CceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCC
Q 007306 455 TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT---LNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 455 ~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~ 529 (608)
+.|+-|.|+.+..+|++| .||+++|||++. ++++.+|.. |..+|+++.|+|.. ..|++++.|..|.|||+.-
T Consensus 303 -sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 789999999998888885 789999999875 567778864 79999999999854 5788889999999999864
Q ss_pred Cce-----------eEEEece-eeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEe
Q 007306 530 LEL-----------RCQINLT-AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 579 (608)
Q Consensus 530 ~~~-----------~~~~~~~-~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~ 579 (608)
..- +..+++. .|+-.| ...+. .+.|++.-+.++++.+.|| +.||.
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~K--evhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVK--EVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecc--hhHhh--hheeccCCCCeEEEecccc-eeEEE
Confidence 221 1111111 122223 33344 8999998888999999998 45554
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=6.8e-21 Score=184.83 Aligned_cols=121 Identities=17% Similarity=0.283 Sum_probs=99.1
Q ss_pred CCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-
Q 007306 256 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s- 333 (608)
.+|.+.|+.+.||| +..+||+||.|..|+||.+..+... .+ ...+..+ ++..-.|.++.|+
T Consensus 76 ~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q----------~L--Sape~~~-----g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 76 AAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQ----------KL--SAPEIDV-----GGGNVIVECLRFHP 138 (1012)
T ss_pred ecccceeeccCccccchhhhhcccCCCeeEEEecCCCccc----------cc--CCcceee-----cCCceEEEEeeccc
Confidence 45999999999999 4557899999999999998744320 11 0111111 1344567899999
Q ss_pred --CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC
Q 007306 334 --GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 334 --~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~ 393 (608)
+.++++++.|.+++||+.+++.+..+.+|...|.+..|+.|| .+++++.|+.|+|||.+.
T Consensus 139 TaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 139 TADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred CcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 789999999999999999999999999999999999999999 999999999999999874
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=4.1e-21 Score=179.43 Aligned_cols=258 Identities=12% Similarity=0.086 Sum_probs=186.0
Q ss_pred cEEEEEEee-------CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCe----eeeccccCCCCCCeEE
Q 007306 261 RVVRLIYSH-------SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL----VMTNDIAADPKDSISC 329 (608)
Q Consensus 261 ~V~~~~fsp-------~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~ 329 (608)
.-.|++|.. .|+|+|.|+.|..|.|||+.-.....-. +.+=...+.. -.+.....+|+..|.+
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~------~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPC------VTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccc------eeechhhhhhhhhhcccccccccchHHHHH
Confidence 345666643 3679999999999999998533221100 0000000000 0011112269999999
Q ss_pred EEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEEeeC
Q 007306 330 FALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKG 402 (608)
Q Consensus 330 v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~-~~~~~~ 402 (608)
++|+ .+.||+|+ |.+|++||+.+|++..++..|.+.|.++.|+|.. .|++|+.|++|.+.|.+.... -..++
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk- 327 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK- 327 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-
Confidence 9999 77999999 9999999999999999999999999999999988 999999999999999985322 22333
Q ss_pred ccccEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--EeCCcEE
Q 007306 403 HQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQID 479 (608)
Q Consensus 403 ~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~d~~i~ 479 (608)
..+.|-.++|.|.. ..++++..||+++-+|++... +++. ....|. ++|.++++++.-..+++ +.|+.++
T Consensus 328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vw-t~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vk 399 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVW-TLKAHD---DEISGLSVNIQTPGLLSTASTDKVVK 399 (463)
T ss_pred eccceEEEEecCCCceeEEEecCCceEEeeecCCCC----Ccee-EEEecc---CCcceEEecCCCCcceeeccccceEE
Confidence 45789999999954 457788899999999999853 6666 556787 79999999988766555 5899999
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCCCcee
Q 007306 480 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELR 533 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~ 533 (608)
+|++............-.-+...|.++.|+-. +++.|+..+.++|||+.+...+
T Consensus 400 lw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 400 LWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99986443321111000123356667777654 5667888889999999887644
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=8.8e-20 Score=168.73 Aligned_cols=300 Identities=15% Similarity=0.115 Sum_probs=211.4
Q ss_pred CCcEEEEEEeeCCC-EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 259 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 259 ~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
..+|..+.|.+++. .|+||+.|..|+||.+..+.... ....+.-.-....|...|+++.|+ |+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------------~~~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------------GDMKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------------CceeEEEeecccCCcceeEEEEEcCCcC
Confidence 56899999999776 99999999999999986654310 001111111222699999999999 89
Q ss_pred EEEEEe-CCcEEEEEcC--------C--------CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 336 HLFSAS-GGKISIFSLE--------T--------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
.|++|+ +|.|.+|... + ....+.+.+|...|..++|+|++ .+++++.|..+++||+..|...
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 999999 7999999765 2 23455677899999999999999 9999999999999999999999
Q ss_pred EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeec--cC-CC-----------CccceEEEEE
Q 007306 398 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GL-VP-----------ETTIVNHIQF 463 (608)
Q Consensus 398 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~-~~-----------~~~~v~~v~~ 463 (608)
..+..|...|..++|.|-++++++-+.|...+.+++...+.........+.. ++ .. ...-...++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 9999999999999999999999999999877777766533222111000000 00 00 0022345789
Q ss_pred cCCCCEEEE--E---eCCc-----EEEEECCC-CceeeeecCCCCCCCeEEEEEecC-----------------CCEEEE
Q 007306 464 HPDQIHLLS--I---HEGQ-----IDVYEAPT-LNHTSQLVPDKMDLPITYATYSCD-----------------GKCIYV 515 (608)
Q Consensus 464 sp~~~~l~~--~---~d~~-----i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~l~s 515 (608)
+|+|.++++ + ..+. .++|+-.. .+++..+... ..+...+.|+|= .+.++.
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 999999987 2 2333 35665432 2233333322 455555555541 122333
Q ss_pred EEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 516 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 516 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
-...+.|+|||.++..+....... |-.. ++.++|++ ||..|+..|.||...+-.+...|
T Consensus 317 iAt~~svyvydtq~~~P~~~v~ni-------hy~~--iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDNI-------HYSA--ITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EeecceEEEeccccccceEEEeee-------eeee--ecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 334578999999998887776521 1222 55999999 89999999999987776665544
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=5.1e-20 Score=172.68 Aligned_cols=287 Identities=13% Similarity=0.085 Sum_probs=200.4
Q ss_pred EeecCCCC--eEEEeecCCeEEEeeccC-CCCCCceeeEeecCCCCCCcEEEEEEeeC-CCEEEEEeCCCcEEEEecCCC
Q 007306 216 STSLPDAD--SAVCAKSLEKSVNLKLQL-INEPSECRTLLLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 216 ~~~s~dg~--~l~~~~~d~~i~iWd~~~-~~~~~~~~~~~l~~~~h~~~V~~~~fsp~-g~~l~s~s~dg~i~iw~~~~~ 291 (608)
..|.|... .+++|+.-|+|-+||+.. .++......+ +.|..+|.++.|+|. ...+++.|.||+|++=|++..
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f----~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF----TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe----ccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 46888765 778888999999999952 1112222222 459999999999994 467899999999998887665
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCce-eeEecCCCCCeE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT-LATFANPPPIAT 367 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~-~~~~~~~~~~v~ 367 (608)
.... ++..+ .....+..+.|+ ...++.+. =|...+||..++.. ...+.-|...|.
T Consensus 268 i~e~----------v~s~~-----------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 268 ISEE----------VLSLD-----------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred hhHH----------HhhcC-----------ccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 4310 11111 123445666777 45566666 47999999987654 677778888999
Q ss_pred EEEEcCCC--eEEEEeCCCcEEEEeCCCCce----EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecc
Q 007306 368 YFILLPQD--LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 441 (608)
Q Consensus 368 ~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 441 (608)
.++++|.. ++++++.|++++|||++.-.. +-....|...|.+..|+|++-.|++.+.|.+|+|||..--.. ..
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa-~~ 405 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA-KD 405 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc-cC
Confidence 99999998 999999999999999886322 222334999999999999887799999999999999841000 01
Q ss_pred cceeeeeccCCCC-ccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEE-EEEecCCCEEEEE-E
Q 007306 442 KFLHSFQTGLVPE-TTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVS-C 517 (608)
Q Consensus 442 ~~~~~~~~~~~~~-~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~sg-~ 517 (608)
.++.++...+... =-......|.|+..+++++ .-..|-|+|-..++.+..+..+. ...|.+ ..|+|-+..+++| +
T Consensus 406 ~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~-~~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 406 EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE-SSTIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc-ccccccceeecccccceeccCC
Confidence 1122122111100 0123456899999999997 67789999998888777765432 323443 5789998855554 5
Q ss_pred cCCeEEEEeCCC
Q 007306 518 KSGHVKVFDTST 529 (608)
Q Consensus 518 ~dg~i~iwd~~~ 529 (608)
..|.|+||--+.
T Consensus 485 s~Gki~vft~k~ 496 (498)
T KOG4328|consen 485 SSGKIYVFTNKK 496 (498)
T ss_pred ccceEEEEecCC
Confidence 568999987554
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.8e-20 Score=175.73 Aligned_cols=239 Identities=13% Similarity=0.127 Sum_probs=188.6
Q ss_pred CCeEEEEEe-CCEEEEEe---CCcEEEEEcCC--CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 325 DSISCFALR-GSHLFSAS---GGKISIFSLET--FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 325 ~~v~~v~~s-~~~l~s~~---d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
..+.++.|. .+.|++++ |..+++|.-.. ++....-+.....-.|++..... ++++|+..+.|+|||++...+.
T Consensus 35 pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 35 PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 348899999 66566665 67888887542 22222222222344577777777 9999999999999999987788
Q ss_pred EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--EeC
Q 007306 398 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHE 475 (608)
Q Consensus 398 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~d 475 (608)
+.+++|...|+++.++-...+||+++..|.|.+..+.++... ..+. ...+ ..|+-+.++|..+++++ +.+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t--t~f~-~~sg-----qsvRll~ys~skr~lL~~asd~ 186 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT--TTFT-IDSG-----QSVRLLRYSPSKRFLLSIASDK 186 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccc--ccee-cCCC-----CeEEEeecccccceeeEeeccC
Confidence 889999999999999999999999999999999999884321 1111 1112 46778999999998887 578
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecC-CCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccE
Q 007306 476 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 554 (608)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 554 (608)
|.|.+||+....++..+.. .|..+...++|+|. ..+|++.+.|..|++||....+....+.. +++..
T Consensus 187 G~VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---------~~Pls-- 254 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---------SHPLS-- 254 (673)
T ss_pred CeEEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---------cCCcc--
Confidence 9999999987778777765 58999999999985 46778899999999999998887777754 44555
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 555 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 555 ~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.++|++ +|.+|+.|+..|.|..||+...+
T Consensus 255 tvaf~~-~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 255 TVAFSE-CGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eeeecC-CceEEEeecCCceEEEEecccCC
Confidence 899999 89999999999999999998654
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.7e-21 Score=202.33 Aligned_cols=243 Identities=17% Similarity=0.228 Sum_probs=187.5
Q ss_pred CCCCeEEEEEe--CC----EEEEEe-CCcEEEEEcCC---C---ceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEE
Q 007306 323 PKDSISCFALR--GS----HLFSAS-GGKISIFSLET---F---QTLATFANPPPIATYFILLPQD--LFAFGFDDSSIL 387 (608)
Q Consensus 323 ~~~~v~~v~~s--~~----~l~s~~-d~~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~ 387 (608)
.....+.++|. +. .|+.|. ||.|.+||... + ..+.+...|.+.|..+.|++.. .+++|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 45667889998 43 467677 99999999865 2 3456677899999999999987 999999999999
Q ss_pred EEeCCCCceEEEee--CccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 388 VHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 388 vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
|||+..-+.-..+. .....|.+++|+.. ...|++++.+|++.|||++..+ ++-.+ ..+.. +..+..++|+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-----pii~l-s~~~~-~~~~S~l~Wh 215 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-----PIIKL-SDTPG-RMHCSVLAWH 215 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-----ccccc-ccCCC-ccceeeeeeC
Confidence 99998754333331 24578999999874 4568999999999999999843 22212 12210 1347899999
Q ss_pred CCC-CEEEE-Ee-C--CcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 465 PDQ-IHLLS-IH-E--GQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 465 p~~-~~l~~-~~-d--~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
|+. ..+++ +. | -.|.+||++.- .+++.+. .|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.
T Consensus 216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCceeeeeecCCCCCceeEeecccccCCchhhhc--ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 996 34444 43 3 36999998753 4556664 479999999999866 899999999999999999999998875
Q ss_pred ceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 538 LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 538 ~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
. ..-|+..+.|.|.+...++.++-||.|-|+.+.+..
T Consensus 294 ~----------~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 A----------QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred C----------CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 3 234566999999888899999999999999998755
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=1.3e-19 Score=167.52 Aligned_cols=292 Identities=16% Similarity=0.160 Sum_probs=205.2
Q ss_pred eecCCCC-eEEEeecCCeEEEeeccCCCCCC---cee-eEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 217 TSLPDAD-SAVCAKSLEKSVNLKLQLINEPS---ECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 217 ~~s~dg~-~l~~~~~d~~i~iWd~~~~~~~~---~~~-~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
.|.+++. .++||+.|..|++|.+......+ .+. .-.| ..|...|+++.|+|+|..||+|+.+|.+.+|....-
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~L--s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSL--SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecc--cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 5666666 99999999999999987533222 111 1123 349999999999999999999999999999987631
Q ss_pred cceeeecccceeeEEeeCCC-----C--eeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecC
Q 007306 292 KQSLEEENVNMESQLYQPSS-----K--LVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN 361 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 361 (608)
. +.+.++ . -.+.. ...+|...|..++|+ +.++++++ |+.+++||+..|+....+..
T Consensus 98 ~-------------~~~~d~e~~~~ke~w~v~k-~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 98 R-------------IFDADTEADLNKEKWVVKK-VLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred C-------------CccccchhhhCccceEEEE-EecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence 1 111111 1 11111 222699999999999 88999999 99999999999999999999
Q ss_pred CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee--------C-----------c----cccEEEEEEeCCCC
Q 007306 362 PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--------G-----------H----QNRITCLAYSLSLN 417 (608)
Q Consensus 362 ~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~--------~-----------~----~~~v~~~~~~~~~~ 417 (608)
|...+..++|.|-+ ++++-+.|...+.+.+...+.++... + | ......++|+|+|.
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred cccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 99999999999999 99999999877777765443332211 0 1 12344678999999
Q ss_pred EEEEEcC----CCcE-----EEEECCCCceecccceeeeeccCCCCccceEEEEEcC------------------CCCEE
Q 007306 418 VLVSSGA----DAQL-----CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP------------------DQIHL 470 (608)
Q Consensus 418 ~l~s~~~----d~~i-----~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp------------------~~~~l 470 (608)
++++.+. .+.+ ++|+-..- .++.-.++... .+...+.|+| -+-.+
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l----~rP~~~lp~~~----k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDL----KRPAARLPSPK----KPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccc----cCceeecCCCC----cceEEEEeeeeEEEeccccccccccccccceEE
Confidence 9887542 2222 33332211 11211111111 1333444443 22334
Q ss_pred EEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCcee
Q 007306 471 LSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 533 (608)
Q Consensus 471 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 533 (608)
+++..+.+++||.++-.++..... -|...++.++|++||.+|+..|.||...+-.++..++-
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 457888999999998887766654 47899999999999999999999999888888776644
No 159
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=6e-20 Score=178.85 Aligned_cols=280 Identities=13% Similarity=0.101 Sum_probs=194.8
Q ss_pred CeEEEeecCCeEEEeeccCCCCC-CceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccc
Q 007306 223 DSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 223 ~~l~~~~~d~~i~iWd~~~~~~~-~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
..|+.+..||.|.++|....... .+++-... ..|...|..+.|-|....|++++.|.+++.||+++.+..
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~--~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~------- 135 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKP--LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV------- 135 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhccc--ccccceeEeeccCCCceeEEEccCCceeeeeeeccceee-------
Confidence 47888999999999998753322 11111111 239999999999997778999999999999998777651
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc--------------------e--
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ--------------------T-- 355 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~--------------------~-- 355 (608)
.+. +.-||.+.|.+++|. ...|++|+ ||.|.|||+.-.. .
T Consensus 136 ---------G~~-----~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 136 ---------GGR-----LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred ---------cce-----eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 111 111799999999999 55788999 9999999985211 0
Q ss_pred -----eeEecCCCCCeEE---EEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEE--------eeCc---cccEEEEEEeC
Q 007306 356 -----LATFANPPPIATY---FILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK--------LKGH---QNRITCLAYSL 414 (608)
Q Consensus 356 -----~~~~~~~~~~v~~---~~~~~~~-~l~~~~~-d~~i~vwd~~~~~~~~~--------~~~~---~~~v~~~~~~~ 414 (608)
+..-..+...|.+ +.+..|. .||+++. |+.|+|||++....... +..| ...+.++....
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs 281 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS 281 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC
Confidence 1111233334444 4455666 8888877 99999999987643321 2223 34577778888
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeec
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV 493 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 493 (608)
.|.+|.+.+.|+.|++|++.+... .++. .+.++... ..-..-..+|++.+++++ .|...++|.+.+-+.--.+.
T Consensus 282 sGt~L~AsCtD~sIy~ynm~s~s~---sP~~-~~sg~~~~-sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 282 SGTYLFASCTDNSIYFYNMRSLSI---SPVA-EFSGKLNS-SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred CCCeEEEEecCCcEEEEeccccCc---Cchh-hccCcccc-eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 889988888899999999987432 2222 22233210 111123468999999994 99999999998765433333
Q ss_pred CCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCc
Q 007306 494 PDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 494 ~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~ 531 (608)
. +|...|++++|.|.. .-++++++|..++||++..+-
T Consensus 357 ~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 357 L-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred h-CcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 3 579999999998643 346667999999999997653
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=8.7e-20 Score=178.20 Aligned_cols=268 Identities=13% Similarity=0.171 Sum_probs=204.7
Q ss_pred CceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 212 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 212 ~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
|...+.|-|||..|+.+.. ..+.++|..+ .+.+.. |.+ |.+.|.|++||.||+.+|+|+.|..|.+|+-+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~nd---G~llqt--LKg--HKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSD---GTLLQP--LKG--HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCC---cccccc--ccc--ccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 4555689999998888765 4688999986 344444 544 9999999999999999999999999999865332
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYF 369 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 369 (608)
.. +.- .|.+.|.|+.|+ ...|++|+=...-+|..+.....+ . .....+.++
T Consensus 86 G~--------------------LkY-----SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K-~-kss~R~~~C 138 (1081)
T KOG1538|consen 86 GI--------------------LKY-----SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK-H-KSSSRIICC 138 (1081)
T ss_pred ce--------------------eee-----ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh-h-hhheeEEEe
Confidence 21 111 599999999999 889999995566788876432221 1 124567899
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee---CccccEEEEEEeCCC-----CEEEEEcCCCcEEEEECCCCceec
Q 007306 370 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLC 440 (608)
Q Consensus 370 ~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~~l~s~~~d~~i~vwd~~~~~~~~ 440 (608)
+|..|| +++.|-.+|+|.+-+-. |+....+. |.+.+|.+++|+|+. ..+++.....++.+|.+......+
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGK 217 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecc
Confidence 999999 99999999999998744 43332232 467899999999953 468888888899999887632222
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 519 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d 519 (608)
.+.+. -...++.+.|+|.+++. |+|+.+++|.- .|-.+.++- ....+|+.++..|++++++.|+.|
T Consensus 218 ~r~L~----------FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg--~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 218 DRALN----------FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVG--EQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred cccCC----------CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeecc--ccceeEEEEEEccCCceEEEEEcc
Confidence 22222 23568999999999999 59999999976 465555553 248899999999999999999999
Q ss_pred CeEEEEeCC
Q 007306 520 GHVKVFDTS 528 (608)
Q Consensus 520 g~i~iwd~~ 528 (608)
|+|-.|++.
T Consensus 285 GTiACyNl~ 293 (1081)
T KOG1538|consen 285 GTIACYNLI 293 (1081)
T ss_pred CeeehhhhH
Confidence 999999865
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=3e-19 Score=160.36 Aligned_cols=272 Identities=16% Similarity=0.166 Sum_probs=202.5
Q ss_pred eecCCCCeEEEeecCCeEEEeeccC----CC-CC----CceeeEeecCCCCCCcEEEEEEe-------eCCCEEEEEeCC
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQL----IN-EP----SECRTLLLPDNSFGGRVVRLIYS-------HSGDFLVALTQT 280 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~----~~-~~----~~~~~~~l~~~~h~~~V~~~~fs-------p~g~~l~s~s~d 280 (608)
.|||||..|.+-+.|..+++|++.. .+ .. ..-..+.++ ....|...+|- |+..++|+.+.+
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---EGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---cCCEEEEEEeeeccccCCCccceeeecccc
Confidence 6999999999999999999998742 00 00 011111111 25677777776 577889999999
Q ss_pred CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCC---CeEEEEEe--CCEEEEEeCCcEEEEEc-CCCc
Q 007306 281 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--GSHLFSASGGKISIFSL-ETFQ 354 (608)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~s--~~~l~s~~d~~i~vwd~-~~~~ 354 (608)
.-|++||.-+++.... .+.|| |.. ...+++|+ |.+|++|-...|+++|+ ..|+
T Consensus 133 ~PIh~wdaftG~lraS-------y~~yd--------------h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr 191 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRAS-------YRAYD--------------HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGR 191 (406)
T ss_pred Cceeeeeccccccccc-------hhhhh--------------hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCC
Confidence 9999999888775221 22333 322 33588999 88999888999999999 4454
Q ss_pred eeeEec-------CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC-
Q 007306 355 TLATFA-------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA- 424 (608)
Q Consensus 355 ~~~~~~-------~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~- 424 (608)
....+. +..+.+.|++|+|.. .+++|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|.+|+.
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 332221 235678999999988 8999999999999998889999999999999999999999999999886
Q ss_pred CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCC-CceeeeecCCCCCCCeE
Q 007306 425 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPIT 502 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~ 502 (608)
|..|-.||++... .++. ....|...+..-.-....|++++|++| .||.|++||+++ |..+..+.. +...+.
T Consensus 272 ~dkIl~WDiR~~~----~pv~-~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~--~sd~vN 344 (406)
T KOG2919|consen 272 DDKILCWDIRYSR----DPVY-ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN--YSDTVN 344 (406)
T ss_pred CCeEEEEeehhcc----chhh-hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc--cccccc
Confidence 7789999998733 3333 233443211222235557899999996 999999999987 666665543 588899
Q ss_pred EEEEecCCCEEEEEEcC
Q 007306 503 YATYSCDGKCIYVSCKS 519 (608)
Q Consensus 503 ~~~~s~~~~~l~sg~~d 519 (608)
.++++|--..+++++..
T Consensus 345 gvslnP~mpilatssGq 361 (406)
T KOG2919|consen 345 GVSLNPIMPILATSSGQ 361 (406)
T ss_pred ceecCcccceeeeccCc
Confidence 99999998888887654
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.2e-20 Score=196.11 Aligned_cols=286 Identities=16% Similarity=0.167 Sum_probs=211.4
Q ss_pred eecCCCC-eEEEe----------ecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCE----EEEEeCCC
Q 007306 217 TSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDF----LVALTQTA 281 (608)
Q Consensus 217 ~~s~dg~-~l~~~----------~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~----l~s~s~dg 281 (608)
++||++. ++++| +.+.++-||.+........+..+ ....-..+-+.++|.+.|.. +|.|..||
T Consensus 13 awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 13 AWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--GSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred EecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc--ccccccccceeeeecccCCCccceeeccccCC
Confidence 6888886 45443 33556667766432222211110 00113567889999998876 78888899
Q ss_pred cEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceee
Q 007306 282 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLA 357 (608)
Q Consensus 282 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~ 357 (608)
.|.+||...-.. + .....+. ....|.+.|..+.|+ ++.|++|+ ||.|.|||++.-+.-.
T Consensus 91 ~I~ly~p~~~~~--------------~-~~~~~la--~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 91 NIVLYDPASIIA--------------N-ASEEVLA--TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred ceEEecchhhcc--------------C-cchHHHh--hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC
Confidence 999998754210 0 0001111 111599999999999 77999999 9999999998754443
Q ss_pred Eec--CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccc--cEEEEEEeCCC-CEEEEEcCCC---c
Q 007306 358 TFA--NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSL-NVLVSSGADA---Q 427 (608)
Q Consensus 358 ~~~--~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~s~~~d~---~ 427 (608)
++. .....|.+++|+..- .|++++.+|.+.|||++..+.+-.+..+.+ .+..+.|+|++ ..+++++.|. .
T Consensus 154 ~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 332 346789999999877 889999999999999999888777765544 47789999976 4466666653 5
Q ss_pred EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC-CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEE
Q 007306 428 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYAT 505 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 505 (608)
|.+||++.. ..+++ +..+|. ..|.++.|++.+ +++++ |.|+.|.+|+.++++.+..+.. ...++..+.
T Consensus 234 iqlWDlR~a----ssP~k-~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~ 303 (1049)
T KOG0307|consen 234 IQLWDLRFA----SSPLK-ILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQ 303 (1049)
T ss_pred eEeeccccc----CCchh-hhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeee
Confidence 999999863 25666 567888 689999999987 66666 5999999999999999999875 378999999
Q ss_pred EecCCC-EEEEEEcCCeEEEEeCCCCc
Q 007306 506 YSCDGK-CIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 506 ~s~~~~-~l~sg~~dg~i~iwd~~~~~ 531 (608)
|+|... .+++++-||.|.||.+.+..
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 998765 78889999999999998654
No 163
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=7.5e-20 Score=167.47 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=160.7
Q ss_pred CCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCC----------------CceEEEeeCccccEEEEEEeCC-CCEEE
Q 007306 361 NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT----------------KKTKAKLKGHQNRITCLAYSLS-LNVLV 420 (608)
Q Consensus 361 ~~~~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 420 (608)
+|.+.+..+..++-+ +.++-+..|.|.||++.. .+++.++.+|...=..++|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 566666666665554 667778899999999852 2466778889998999999992 22477
Q ss_pred EEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE-E-EeCCcEEEEECCCCceeeeecCCCCC
Q 007306 421 SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL-S-IHEGQIDVYEAPTLNHTSQLVPDKMD 498 (608)
Q Consensus 421 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~-~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 498 (608)
+|.--+.|++|...++.-. .-+.-+.+|. ..|-.++|||..+-++ + +.|++|+|||++.+.....+....|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~---vd~~Pf~gH~---~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK---VDQRPFTGHT---KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cCccccceEeeeeccCcee---ecCccccccc---cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccC
Confidence 8888889999998875421 1111344677 7899999999875555 4 48999999999988433333334678
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEeCCC---CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcE
Q 007306 499 LPITYATYSCDGKCIYVSCKSGHVKVFDTST---LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 575 (608)
Q Consensus 499 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~---~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v 575 (608)
..|.-+.|+.+..+||+|+.||+++|||++. ++++..+..| .++|+ ++.|+|.+...|+++|.|.+|
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H--------k~pIt--sieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH--------KAPIT--SIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec--------cCCee--EEEeccccCceEEeccCCCcE
Confidence 9999999999888999999999999999975 5666777644 55566 999999888999999999999
Q ss_pred EEEeCCCCc
Q 007306 576 HVIEPLESE 584 (608)
Q Consensus 576 ~iW~~~~~~ 584 (608)
.|||+.-..
T Consensus 373 tiWDlsvE~ 381 (440)
T KOG0302|consen 373 TIWDLSVEA 381 (440)
T ss_pred EEEEeeccC
Confidence 999997543
No 164
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.9e-18 Score=148.04 Aligned_cols=286 Identities=13% Similarity=0.150 Sum_probs=198.2
Q ss_pred cEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEE
Q 007306 261 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA 340 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~ 340 (608)
.|.+-+++|.+++|++|+.+|+|-+..+.+-...- -+.+....++.. .+|+++|+.++|.+.+|++|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s----------a~~~gk~~iv~e---qahdgpiy~~~f~d~~Lls~ 78 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS----------AEPPGKLKIVPE---QAHDGPIYYLAFHDDFLLSG 78 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc----------cCCCCCcceeec---cccCCCeeeeeeehhheeec
Confidence 45666899999999999999999999875432100 011111112221 27999999999999999999
Q ss_pred eCCcEEEEEcCCCce------eeEec-------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcccc
Q 007306 341 SGGKISIFSLETFQT------LATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 341 ~d~~i~vwd~~~~~~------~~~~~-------~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
+||.|+-|.-+.... +.... ..-..|+++...|.. .++.++.|+.++-||+++|+....+++|++.
T Consensus 79 gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 79 GDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred cCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 999999987543211 11111 122467889899888 6666668999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee---eeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS---FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 483 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~ 483 (608)
|.+++--.....+++|+.||++++||.++.+......... ....|.. ..|-+++. +..++++|....+.+|.+
T Consensus 159 vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g--~wigala~--~edWlvCGgGp~lslwhL 234 (325)
T KOG0649|consen 159 VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG--KWIGALAV--NEDWLVCGGGPKLSLWHL 234 (325)
T ss_pred eeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC--ceeEEEec--cCceEEecCCCceeEEec
Confidence 9999885555578899999999999999965432111110 1111221 34555554 467899988889999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
++.++...|.. ..++..+.|-. +.++++++.+.|.-|.+. |.+....+. + .+..+ ..+|+-+--
T Consensus 235 rsse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~------~--s~~c~--s~s~~~~p~ 298 (325)
T KOG0649|consen 235 RSSESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPV------E--STACY--SASWQTSPI 298 (325)
T ss_pred cCCCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccC------C--cccee--eecccCCce
Confidence 99999888865 56677888864 478888888899999875 333333322 2 22233 555554223
Q ss_pred CEEEEEeCCCcEEEEe
Q 007306 564 NRIALGLTNGRVHVIE 579 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~ 579 (608)
.++-.++....+.|+.
T Consensus 299 k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 299 KFISIAGFSNKLHILK 314 (325)
T ss_pred EEEEecccceeeeeee
Confidence 5666667777777764
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=3.2e-19 Score=174.30 Aligned_cols=271 Identities=14% Similarity=0.183 Sum_probs=202.0
Q ss_pred cEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEE
Q 007306 261 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 338 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~ 338 (608)
.|..++|-|||..|+.+..+ .+. +||++.|..++.+. +|++.|+|++|+ |+.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rll---------------------iyD~ndG~llqtLK--gHKDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLL---------------------VYDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEE---------------------EEeCCCcccccccc--cccceEEEEEEccCCceec
Confidence 88999999999988776554 444 45555555555433 799999999999 99999
Q ss_pred EEe-CCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC
Q 007306 339 SAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 339 s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 415 (608)
+|+ |..|.+|+..-. ..++ .|...|.|+.|+|-. .+++++-+ ..-+|........+ .+ ...++.+++|..|
T Consensus 70 SG~aDK~VI~W~~klE---G~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~~~CsWtnD 143 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLE---GILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRIICCSWTND 143 (1081)
T ss_pred cCCCceeEEEeccccc---ceeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeEEEeeecCC
Confidence 999 999999986432 2222 689999999999999 88888754 56778766543322 22 3467889999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC-----CEEEE-EeCCcEEEEECCCCcee
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-----IHLLS-IHEGQIDVYEAPTLNHT 489 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-----~~l~~-~~d~~i~iwd~~~~~~~ 489 (608)
|.+++.|-.||+|.+-+-...+. ..+. .+.|.. ++|.+++|+|+. ..+++ -...++.+|.+ +|+.+
T Consensus 144 GqylalG~~nGTIsiRNk~gEek---~~I~-Rpgg~N---spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~I 215 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEEK---VKIE-RPGGSN---SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQI 215 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCcc---eEEe-CCCCCC---CCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceee
Confidence 99999999999999986554221 2222 233444 789999999974 34555 36778888887 56655
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
..-..- .-...++.+-++|.|++.|+.|+.+.+|..+ |-.+.++ |..++.+| .++.+| ++.+++.|
T Consensus 216 gk~r~L--~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTv--------g~~D~WIW--tV~~~P-NsQ~v~~G 281 (1081)
T KOG1538|consen 216 GKDRAL--NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTV--------GEQDSWIW--TVQAKP-NSQYVVVG 281 (1081)
T ss_pred cccccC--CCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeec--------cccceeEE--EEEEcc-CCceEEEE
Confidence 432211 4456688899999999999999999999755 4444554 33366677 999999 89999999
Q ss_pred eCCCcEEEEeCCCC
Q 007306 570 LTNGRVHVIEPLES 583 (608)
Q Consensus 570 s~Dg~v~iW~~~~~ 583 (608)
+.||+|..|++...
T Consensus 282 CqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 282 CQDGTIACYNLIFS 295 (1081)
T ss_pred EccCeeehhhhHHh
Confidence 99999999998654
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2e-19 Score=157.03 Aligned_cols=266 Identities=14% Similarity=0.054 Sum_probs=184.9
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccc
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
..+|.+|..-|.|++|++++......+.. .|...|+.+.--|++. |.+-+.|+.+.+|++........
T Consensus 25 ~~rL~sg~~~G~V~~w~lqt~r~~~~~r~------~g~~~it~lq~~p~d~-l~tqgRd~~L~lw~ia~s~~i~i----- 92 (323)
T KOG0322|consen 25 NERLMSGLSVGIVKMWVLQTERDLPLIRL------FGRLFITNLQSIPNDS-LDTQGRDPLLILWTIAYSAFISI----- 92 (323)
T ss_pred chhhhcccccceEEEEEeecCccchhhhh------hccceeeceeecCCcc-hhhcCCCceEEEEEccCcceEEE-----
Confidence 34588999999999999986332222221 1688999999999854 89999999999998865443111
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-C----------CEEEEEeCC--cEEEEEcCCCceeeEec----CCCC
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALR-G----------SHLFSASGG--KISIFSLETFQTLATFA----NPPP 364 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~----------~~l~s~~d~--~i~vwd~~~~~~~~~~~----~~~~ 364 (608)
|+-.++++.|. . ..++.-+.| .+.+-|......++... +..+
T Consensus 93 ---------------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 93 ---------------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred ---------------------eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 22223333332 0 111211111 12222222222222221 3346
Q ss_pred CeEEEEEcCCC----eEEEEeCCCcEEEEeCCCCce----------EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEE
Q 007306 365 IATYFILLPQD----LFAFGFDDSSILVHCPCTKKT----------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 430 (608)
Q Consensus 365 ~v~~~~~~~~~----~l~~~~~d~~i~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~v 430 (608)
.+.|..+..+. .+++|.++|.|.+||+.++.. ......|..+|.++.+.+....=++|+.+..+..
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~ 231 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVM 231 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccccee
Confidence 67777764433 788999999999999999833 3344568999999999987666778888999999
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 509 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 509 (608)
|.++..... ..+.....-.. ..|..+.+-||++.+++ |.|+.||||+.++++++..+.. |...|.+++|+|+
T Consensus 232 ~Sl~~s~gs--lq~~~e~~lkn---pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky--Hsagvn~vAfspd 304 (323)
T KOG0322|consen 232 YSLNHSTGS--LQIRKEITLKN---PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY--HSAGVNAVAFSPD 304 (323)
T ss_pred eeeccccCc--ccccceEEecC---CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh--hhcceeEEEeCCC
Confidence 988753211 11111111122 36888999999999999 7999999999999999998875 6899999999999
Q ss_pred CCEEEEEEcCCeEEEEeC
Q 007306 510 GKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 510 ~~~l~sg~~dg~i~iwd~ 527 (608)
...+|+++.|+.|.+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=157.99 Aligned_cols=278 Identities=12% Similarity=0.112 Sum_probs=186.4
Q ss_pred CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----CCEEEEEe-CCcEE
Q 007306 272 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKIS 346 (608)
Q Consensus 272 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~~l~s~~-d~~i~ 346 (608)
..+|++-.+|+|++||..+++. +.... ++...++.++|. ...+.+|+ ||+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~---------------------l~~fk--~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL---------------------LEEFK--GPPATTNGVRFISCDSPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh---------------------hheec--CCCCcccceEEecCCCCCeeEEeccCCeEE
Confidence 5688888999999888776543 11111 577888888887 46788888 99999
Q ss_pred EEEcCCCceeeEe--cCCC-CCeEEEEEcCCC-eEEEEe----CCCcEEEEeCCCCce-EEEe-eCccccEEEEEEeC-C
Q 007306 347 IFSLETFQTLATF--ANPP-PIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKT-KAKL-KGHQNRITCLAYSL-S 415 (608)
Q Consensus 347 vwd~~~~~~~~~~--~~~~-~~v~~~~~~~~~-~l~~~~----~d~~i~vwd~~~~~~-~~~~-~~~~~~v~~~~~~~-~ 415 (608)
+||+++......+ ..+. .+..|++.+..+ .+++|. .+-.|.+||++..+. +..+ ..|...|+++.|+| +
T Consensus 98 ~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~ 177 (376)
T KOG1188|consen 98 LWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD 177 (376)
T ss_pred EEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC
Confidence 9999876554433 3444 456777776666 777775 355899999998765 5444 45999999999999 5
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC--CEEEEEeCCcEEEEECCCCceeeeec
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHTSQLV 493 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~d~~i~iwd~~~~~~~~~~~ 493 (608)
.++|++|+.||-|.+||+..... ...+.++. .+. ..|..+.|..++ +....+...+..+|+++.+.+...+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~E--eDaL~~vi-N~~---sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNE--EDALLHVI-NHG---SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCeEEeecccceEEeeecCCCcc--hhhHHHhh-ccc---ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 68999999999999999987421 12222122 222 579999999887 54444899999999999887655443
Q ss_pred CCC----------CCCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 494 PDK----------MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 494 ~~~----------~~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
.+. ....+...-...++...+.++. -|+..++-+.........+... .+.|++..-++ ++.|.. .
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a-~l~g~~~eiVR--~i~~~~-~ 327 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPA-ILQGGHEEIVR--DILFDV-K 327 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccc-cccCCcHHHHH--HHhhhc-c
Confidence 321 0122222222234555555555 4666666554222111221111 12244455555 777876 6
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 007306 563 PNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~~ 582 (608)
+.++.||+.||.|.+|....
T Consensus 328 ~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cceeeccCCCceEEEEecCC
Confidence 89999999999999999543
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=3.6e-16 Score=161.68 Aligned_cols=324 Identities=22% Similarity=0.318 Sum_probs=241.1
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEE-eeCCC-EEEEEeC-CCcEEEEecCC
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIY-SHSGD-FLVALTQ-TATHKLWKWQS 290 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~f-sp~g~-~l~s~s~-dg~i~iw~~~~ 290 (608)
....+.+++..++.++.|+.+.+|+..... ..... +.. .+...+..+.+ ++++. +++..+. |+.+.+|+...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 143 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGE--KLIKS--LEG-LHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST 143 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCc--eeEEE--Eec-cCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC
Confidence 345799999999999999999999998521 02333 211 02247777777 88888 5555455 89999998765
Q ss_pred -CcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCC
Q 007306 291 -NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI 365 (608)
Q Consensus 291 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~ 365 (608)
... ..... .|...|.+++|+ +..+++++ |+.+++|++.++..+..+.+|...
T Consensus 144 ~~~~---------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (466)
T COG2319 144 PGKL---------------------IRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200 (466)
T ss_pred CCeE---------------------EEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc
Confidence 211 11001 589999999999 66777776 899999999998999999999999
Q ss_pred eEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCceEE-EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 366 ATYFILLPQD-LFAFG-FDDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 366 v~~~~~~~~~-~l~~~-~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
+.+++|+|++ .++++ +.|+.|++||...+..+. .+.+|.... ...|+|++..+++++.|+.+++||+.....
T Consensus 201 v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---- 275 (466)
T COG2319 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---- 275 (466)
T ss_pred eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----
Confidence 9999999998 45555 999999999998888887 688888775 448999998999999999999999987442
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCC
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSG 520 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg-~~dg 520 (608)
.+... .+|. ..+.++.|+|++..+++ +.|+.+.+||..+...........|...+..+.|.+++..++.+ ..|+
T Consensus 276 ~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 276 LLRTL-SGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEE-ecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCC
Confidence 23322 4555 68999999998888888 56788999999887766555422345679999994333566655 6789
Q ss_pred eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE-EeCCCcEEEEeCCCCcccc
Q 007306 521 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL-GLTNGRVHVIEPLESEVEW 587 (608)
Q Consensus 521 ~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las-~s~Dg~v~iW~~~~~~~~~ 587 (608)
.+.+|+........... . ... +..+.+++ + ..++. +..++.+.+|+........
T Consensus 352 ~~~~~~~~~~~~~~~~~-------~--~~~--~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (466)
T COG2319 352 TIRLWDLRTGKPLKTLE-------G--HSN--VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLR 406 (466)
T ss_pred cEEeeecCCCceeEEec-------C--Cce--EEEEEECC-C-CCEEEEecCCCceEEEecccCeeee
Confidence 99999999887222221 1 111 44888988 7 55555 8899999999998876643
No 169
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.7e-17 Score=166.92 Aligned_cols=359 Identities=15% Similarity=0.143 Sum_probs=248.7
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCC---CEEEEEeCCCcEEEEecCCCcc
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG---DFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g---~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.||+|+++++.... ..|.|+... +++|.. .|++ |..++..+.+.|.. .++++++.||.|++||+..+..
T Consensus 23 vfSnD~k~l~~~~~-~~V~VyS~~----Tg~~i~-~l~~--~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTG-NFVKVYSTA----TGECIT-SLED--HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ccccCCcEEEEeeC-CEEEEEecc----hHhhhh-hccc--ccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 69999998877654 679999998 577776 3765 99999999998854 4788999999999999977665
Q ss_pred eee------ecc--------------------------------------------------------------------
Q 007306 294 SLE------EEN-------------------------------------------------------------------- 299 (608)
Q Consensus 294 ~~~------~~~-------------------------------------------------------------------- 299 (608)
... ...
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 422 000
Q ss_pred ----cceeeEEeeCCCCe--eeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC----CceeeEecCCCCCe
Q 007306 300 ----VNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIA 366 (608)
Q Consensus 300 ----~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~----~~~~~~~~~~~~~v 366 (608)
......+|....+. .........|...+++++++ +++++++. ||.|.+|.--. ....+.+.=|...|
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV 254 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence 00011344443322 11111122477778999999 88999999 99999996432 22345566788999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccccee
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
.+++|+++| +|++|+..+.+.+|.+.+++ .+-+..-.++|..+.++||+...+....|..|.+....+.+.. ..+.
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k--~tIs 331 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK--STIS 331 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh--hhcc
Confidence 999999999 99999999999999999988 4445556789999999999999999999999999887553211 1111
Q ss_pred eeecc----CCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCC---------CCCCeEEEEEecCCC
Q 007306 446 SFQTG----LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------MDLPITYATYSCDGK 511 (608)
Q Consensus 446 ~~~~~----~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~ 511 (608)
.+... .....+-.+.++++|.-+.++. +..+.|.+||+-+.+.+..+..-. +...+++++.+..|.
T Consensus 332 gi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs 411 (792)
T KOG1963|consen 332 GIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS 411 (792)
T ss_pred CccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce
Confidence 11100 0001145678899995444554 899999999998776655543211 134578888888899
Q ss_pred EEEEEEc--------C--CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 512 CIYVSCK--------S--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 512 ~l~sg~~--------d--g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+++++-. | -.+++|.......-..+......|.| .. . +..+..+|.....+++++.||.++||-+.
T Consensus 412 ~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~--~~-~-vat~~~~~~rs~~~vta~~dg~~KiW~~~ 487 (792)
T KOG1963|consen 412 WMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG--NA-F-VATIFLNPTRSVRCVTASVDGDFKIWVFT 487 (792)
T ss_pred EEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC--ce-e-EEEEEecCcccceeEEeccCCeEEEEEEe
Confidence 9998642 3 35788988776655555544444433 32 1 22344444334489999999999999994
Q ss_pred ------CCccccccC
Q 007306 582 ------ESEVEWGKL 590 (608)
Q Consensus 582 ------~~~~~~~~~ 590 (608)
.....|...
T Consensus 488 ~~~n~~k~~s~W~c~ 502 (792)
T KOG1963|consen 488 DDSNIYKKSSNWTCK 502 (792)
T ss_pred cccccCcCccceEEe
Confidence 344456553
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.9e-18 Score=175.12 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=210.2
Q ss_pred CCCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee--CCCEEEEEeCCCcEEEE
Q 007306 209 DNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLW 286 (608)
Q Consensus 209 ~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp--~g~~l~s~s~dg~i~iw 286 (608)
.+.....+.|+|-...++++.....|++||.+.+ ..+..+.. +..-...|+.+.+-. |...+++|+.||.|+||
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~---~~l~~F~n-~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKG---RLLNGFDN-GAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccC---ceeccccC-CCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence 3334455689999999999999999999999852 22332211 111346799999876 55689999999999999
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEec-CC
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NP 362 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~ 362 (608)
+--.... ....-+.-|..-++... +..+.-.-+.|. ..+|++++ -..|+|||.....++..+. +.
T Consensus 1139 k~y~~~~-----~~~eLVTaw~~Ls~~~~------~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1139 KDYADKW-----KKPELVTAWSSLSDQLP------GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS 1207 (1387)
T ss_pred ccccccc-----CCceeEEeeccccccCc------cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC
Confidence 7422210 00001223443333322 122222345666 44555555 6899999999888777765 33
Q ss_pred CCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCC---ceEEEeeCcccc--EEEEEEeCCCCE-EEEEcCCCcEEEEECC
Q 007306 363 PPIATYFILLP-QD-LFAFGFDDSSILVHCPCTK---KTKAKLKGHQNR--ITCLAYSLSLNV-LVSSGADAQLCVWDAV 434 (608)
Q Consensus 363 ~~~v~~~~~~~-~~-~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~--v~~~~~~~~~~~-l~s~~~d~~i~vwd~~ 434 (608)
...|+++.-+- .| .|++|..||.|++||.+.. ..+..++.|+.. |..+.+.+.|-- |++|+.||.|++||++
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 44566665543 34 9999999999999998764 356778888887 999999987654 9999999999999999
Q ss_pred CCceecccceeeeeccC-CCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCC-----CCCCCeEEEEEec
Q 007306 435 GWKKLCSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSC 508 (608)
Q Consensus 435 ~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~ 508 (608)
....... +. +.... .+ +..+++..+++...+++|+.+.|+||++ .|+.+..+... ...+.+.+++|+|
T Consensus 1288 ~~~~e~~--~~-iv~~~~yG--s~lTal~VH~hapiiAsGs~q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1288 MSSKETF--LT-IVAHWEYG--SALTALTVHEHAPIIASGSAQLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred cCccccc--ce-eeeccccC--ccceeeeeccCCCeeeecCcceEEEEec-ChhhhcccccCcccccCcCCCcceeeecc
Confidence 8422211 11 11111 11 3589999999999999976699999999 46655554432 1256789999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCc
Q 007306 509 DGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
..-++|+|+.|..|.||....++
T Consensus 1362 ~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1362 HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhHhhhhccCCceEEEeecCCcC
Confidence 99999999999999999987654
No 171
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2e-19 Score=170.00 Aligned_cols=294 Identities=14% Similarity=0.178 Sum_probs=218.7
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
+|.+-|..+.|+..|..|++||.|..|.+|||.+..... . +..+|...|..-.|-
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l------------~----------f~SGH~~NvfQaKFiP~s 197 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL------------S----------FESGHCNNVFQAKFIPFS 197 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCccc------------c----------cccccccchhhhhccCCC
Confidence 499999999999999999999999999999998876522 1 222576666655554
Q ss_pred -CCEEEEEe-CCcEEEEEcCC-Ccee--eEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEee---Cc
Q 007306 334 -GSHLFSAS-GGKISIFSLET-FQTL--ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK---GH 403 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~-~~~~--~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~---~~ 403 (608)
...+++++ ||++++=.+.. +.+. ..+..|.+.|..++.-|+. .|.+++.|+.+.-+|++++.....+. .+
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC
Confidence 56788888 99999987643 3333 3455899999999999998 89999999999999999875543332 23
Q ss_pred cc---cEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceec-ccceeeeeccC----CCCccceEEEEEcCCCCEEEEE-
Q 007306 404 QN---RITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGL----VPETTIVNHIQFHPDQIHLLSI- 473 (608)
Q Consensus 404 ~~---~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~l~~~- 473 (608)
.. ...+++.+|.. ..+++++.|..+++||.+.-.... ...+.++...| .+ ..|++++++.++.-++++
T Consensus 278 ~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~--v~ITgl~Ysh~~sElLaSY 355 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDP--VNITGLVYSHDGSELLASY 355 (559)
T ss_pred CccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCc--ccceeEEecCCccceeeee
Confidence 33 56788889854 479999999999999987643221 01122111111 11 579999999887777775
Q ss_pred eCCcEEEEECCC--C----------ceeee-ecCCCCCCCeEEEEE-ecCCCEEEEEEcCCeEEEEeCCCCceeEEEece
Q 007306 474 HEGQIDVYEAPT--L----------NHTSQ-LVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 539 (608)
Q Consensus 474 ~d~~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 539 (608)
.|-.|+++.-.. | ..+.. ++++.....|..+-| .|...|+++|+.-|.|.||+-.+++.+..+...
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence 888999996432 2 12222 554444556777765 589999999999999999999999998887632
Q ss_pred eeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 540 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 540 ~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
.+ .|+|+.-|| --.+||+++-|.-|+||.+.+.+.
T Consensus 436 --------r~--VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 436 --------RH--VVNCLEPHP-HLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred --------cc--eEeccCCCC-CCchhhccCCccceeeecCCcccc
Confidence 22 355999999 578999999999999999976554
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-17 Score=143.94 Aligned_cols=276 Identities=17% Similarity=0.231 Sum_probs=190.4
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCC-----CCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLI-----NEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~-----~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
+++|-+++++.|..+|+|-+..+... ..+++...+.. .+|.++|+.++|. ..+|++|+. |.|+-|.+...
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~e--qahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPE--QAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeec--cccCCCeeeeeee--hhheeeccC-ceEEEeeehhh
Confidence 69999999999999999999988642 23444444333 5599999999999 345666654 99999988654
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
.... ..-.+|.......... -.-..|+++... +..+..|+|+.++-||+++|+..+.+++|..-+.+
T Consensus 92 ~es~------~~K~lwe~~~P~~~~~----~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 92 EESL------ATKRLWEVKIPMQVDA----VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred hhhc------cchhhhhhcCccccCc----ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 3210 0113555433321110 122457777666 56666677999999999999999999999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCc----------cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCc
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----------QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 437 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 437 (608)
+.-.... .+++|++||++++||.++++.++.+... ...|-+++. +..++++|+ ...+.+|.+++.+
T Consensus 162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSE 238 (325)
T ss_pred eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCC
Confidence 9885555 9999999999999999999988776431 123445444 456787665 5678999999966
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC-CCEEEE
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD-GKCIYV 515 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s 515 (608)
..+..++. ..+..+.|..| .+++ |..+.+.-|.+ +|......... ....++..|+.. -++|-.
T Consensus 239 ~t~vfpip----------a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a~ip~~--s~~c~s~s~~~~p~k~~s~ 303 (325)
T KOG0649|consen 239 STCVFPIP----------ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQANIPVE--STACYSASWQTSPIKFISI 303 (325)
T ss_pred ceEEEecc----------cceeEeeeecc--eEEEeccccceeeeee-ccEEEEeccCC--ccceeeecccCCceEEEEe
Confidence 55444444 56778888754 4555 66778999988 56554444332 344555555532 345555
Q ss_pred EEcCCeEEEE
Q 007306 516 SCKSGHVKVF 525 (608)
Q Consensus 516 g~~dg~i~iw 525 (608)
++..+.+.|+
T Consensus 304 ag~s~~~~i~ 313 (325)
T KOG0649|consen 304 AGFSNKLHIL 313 (325)
T ss_pred cccceeeeee
Confidence 6666666665
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=4.5e-16 Score=160.94 Aligned_cols=312 Identities=22% Similarity=0.291 Sum_probs=231.7
Q ss_pred cCCCC-eEEEeec-CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC-CCcEEEEecCCCccee
Q 007306 219 LPDAD-SAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 295 (608)
Q Consensus 219 s~dg~-~l~~~~~-d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~~ 295 (608)
++++. .++..+. |+.+.+|+... ..... ..+. +|...|.+++|+|++.++++++. |+.+++|+......
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~-~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 190 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLST---PGKLI-RTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP-- 190 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecC---CCeEE-EEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce--
Confidence 78887 5555444 99999999973 01222 2232 39999999999999998999886 99999998765332
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCceee-EecCCCCCeEEEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLA-TFANPPPIATYFI 370 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~-~l~s~~-d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~ 370 (608)
..... +|...|.+++|+ +. .+++++ |+.|++||...+.... .+.+|.... ...
T Consensus 191 -------------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 191 -------------------LSTLA--GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248 (466)
T ss_pred -------------------EEeec--cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEe
Confidence 11111 488999999999 55 555546 9999999998888888 688888775 448
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCce-EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
|+|++ .+++++.|+.+++|+...... ...+.+|...+.++.|+|++..+++++.|+.+.+||..+........ .
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~ 324 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT----L 324 (466)
T ss_pred ECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee----e
Confidence 99999 888999999999999987664 44446788999999999988888889999999999888743221111 1
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE-EEcCCeEEEE
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVF 525 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-g~~dg~i~iw 525 (608)
..|. ..+..+.+.+++..++.+ .|+.+.+|+............ ...+..+.+++ ...+.. +..++.+.+|
T Consensus 325 ~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 397 (466)
T COG2319 325 KGHE---GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG---HSNVLSVSFSP-DGRVVSSGSTDGTVRLW 397 (466)
T ss_pred cccC---CceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC---CceEEEEEECC-CCCEEEEecCCCceEEE
Confidence 2454 458888884333455553 778899999987773333321 22288899988 544444 6889999999
Q ss_pred eCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 526 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 526 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
+............. ... +....+++ ++..+++++.++.+++|+..+
T Consensus 398 ~~~~~~~~~~~~~~--------~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 398 DLSTGSLLRNLDGH--------TSR--VTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ecccCeeeeeccCC--------CCc--EEEEEECC-CCcEEEEecCCCcEEEEeccC
Confidence 99998877665421 022 44788888 788999999999999999987
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=4.2e-18 Score=150.68 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=154.1
Q ss_pred eeeEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEee-----CccccEEEEEEeC--CCCEEEEEcC
Q 007306 355 TLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK-----GHQNRITCLAYSL--SLNVLVSSGA 424 (608)
Q Consensus 355 ~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~s~~~ 424 (608)
++..+. .+-+.|.|+.|.|++ .+++-. |..|.+|++..+.. ...+. ++....++-+|+| +|+.+++. .
T Consensus 114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~ 191 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-S 191 (370)
T ss_pred HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-C
Confidence 333443 345688999999999 777765 88999999988765 33332 2456677889998 78877765 4
Q ss_pred CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--EeCCcEEEEECCCC-ceeeeecCCCCCCCe
Q 007306 425 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTL-NHTSQLVPDKMDLPI 501 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v 501 (608)
|+++..||+++.. ....+...|. ..|.++.|+|+.+++++ |.||.|+|||.+.- .++.++. +|...|
T Consensus 192 d~tl~~~D~RT~~-----~~~sI~dAHg---q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~--~HsHWv 261 (370)
T KOG1007|consen 192 DSTLQFWDLRTMK-----KNNSIEDAHG---QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP--GHSHWV 261 (370)
T ss_pred CCcEEEEEccchh-----hhcchhhhhc---ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC--CCceEE
Confidence 8999999999843 3333556676 68999999999877766 48899999999854 4555554 579999
Q ss_pred EEEEEecC-CCEEEEEEcCCeEEEEeCCCCceeEEEec---------------eeeccCC------CcccccccEEEEEe
Q 007306 502 TYATYSCD-GKCIYVSCKSGHVKVFDTSTLELRCQINL---------------TAYAQPG------TISLELYPLVIAAH 559 (608)
Q Consensus 502 ~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~---------------~~~~~~g------~~~~~v~~~~v~~s 559 (608)
+++.|+|. .++|++|+.|..|.+|...+-.....+.. +...+.| .+...+| +++||
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY--~~aWS 339 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVY--ALAWS 339 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceE--EEeec
Confidence 99999985 46788999999999998654221111000 0001111 1245577 99999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 007306 560 PLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~ 581 (608)
..|+-.||+-|.||.+.|=++.
T Consensus 340 sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cCCCeeEEEeccCceEEeecCC
Confidence 9899999999999999886664
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.1e-18 Score=157.11 Aligned_cols=253 Identities=14% Similarity=0.136 Sum_probs=184.9
Q ss_pred cCCCCCCeEEEEEe-------CCEEEEEeCCcEEEEEcCCC---ceeeEec--CCCCCeEEEEEcCC---C--eEEEEeC
Q 007306 320 AADPKDSISCFALR-------GSHLFSASGGKISIFSLETF---QTLATFA--NPPPIATYFILLPQ---D--LFAFGFD 382 (608)
Q Consensus 320 ~~~~~~~v~~v~~s-------~~~l~s~~d~~i~vwd~~~~---~~~~~~~--~~~~~v~~~~~~~~---~--~l~~~~~ 382 (608)
.+.|..+|..++|. ...+++++.+.+.+|..... +.++.+. .+......++|+-+ + ++|+|+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 33699999999998 24667777888999987643 2334433 35566777788643 3 8999999
Q ss_pred CCcEEEEeCCCCceEEEeeCccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEE
Q 007306 383 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 461 (608)
Q Consensus 383 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 461 (608)
-|.|+|.|+.+++....+.+|...|+.+.++|+ .+++++++.|..|++|++++.. ++- ++.|-..+++.|.++
T Consensus 114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-----Cv~-VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-----CVA-VFGGVEGHRDEVLSV 187 (385)
T ss_pred eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-----EEE-EecccccccCcEEEE
Confidence 999999999999999999999999999999995 4789999999999999999943 443 444433333899999
Q ss_pred EEcCCCCEEEE-EeCCcEEEEECCCCc------eeeeecC--------------------CCCCCCeEEEEEecCCCEEE
Q 007306 462 QFHPDQIHLLS-IHEGQIDVYEAPTLN------HTSQLVP--------------------DKMDLPITYATYSCDGKCIY 514 (608)
Q Consensus 462 ~~sp~~~~l~~-~~d~~i~iwd~~~~~------~~~~~~~--------------------~~~~~~v~~~~~s~~~~~l~ 514 (608)
.|+++|.++++ |.|.+|++|++...+ +...+.. .-|...|-++.|- |.+++
T Consensus 188 D~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~il 265 (385)
T KOG1034|consen 188 DFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFIL 265 (385)
T ss_pred EEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhee
Confidence 99999999999 699999999997322 1111111 1133444444443 57899
Q ss_pred EEEcCCeEEEEeC-CCCceeEEE---------eceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 515 VSCKSGHVKVFDT-STLELRCQI---------NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 515 sg~~dg~i~iwd~-~~~~~~~~~---------~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
+-|-++.|..|.. +-++.+... ...... ....+|-+..+|.| -+++||.|...|.|.+||+...+
T Consensus 266 SkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~----~~c~iWfirf~~d~-~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 266 SKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY----PMCDIWFIRFAFDP-WQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred ecccCceEEEEecchhhhhhhccCCCccceeeeeEecc----CccceEEEEEeecH-HHHHHhhccCCCcEEEEECCCCC
Confidence 9999999999987 222221111 111111 13457767788888 68999999999999999999876
Q ss_pred c
Q 007306 585 V 585 (608)
Q Consensus 585 ~ 585 (608)
+
T Consensus 341 p 341 (385)
T KOG1034|consen 341 P 341 (385)
T ss_pred C
Confidence 6
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.2e-18 Score=155.03 Aligned_cols=307 Identities=12% Similarity=0.063 Sum_probs=212.0
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
+|.+-|.++.||.+|++|++|+.|..+++|.+...-. .++.+.+.. ....|...|.|++|. +
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---------------~k~~KPI~~-~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---------------RKTPKPIGV-MEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHh---------------hcCCCCcee-ccCccccceEEEEEccCC
Confidence 4999999999999999999999999999998754321 111111111 111477999999999 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-eEEE--eeCccccE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-TKAK--LKGHQNRI 407 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~-~~~~--~~~~~~~v 407 (608)
..+++|. +++|...|+++.+.+..+.. ..+.|+.+..+|.. .|++.+.++.|.+||.+... .+.. ........
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F 197 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNF 197 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccc
Confidence 6788888 99999999999988887763 34589999999999 99999999999999998754 2222 22244567
Q ss_pred EEEEEeCC-CCEEEEEcCCCcEEEEECCCCceeccccee--eeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEEC
Q 007306 408 TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEA 483 (608)
Q Consensus 408 ~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~ 483 (608)
.++-|+|. ..+|++.+..+.+-+||.+.... ++. ....+-......-.++.|+|+|..+++- ....-.+||+
T Consensus 198 ~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~----~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 198 YTAEFHPETPALILVNSETGGPNVFDRRMQAR----PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred eeeeecCCCceeEEeccccCCCCceeeccccc----hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 78889994 46788888899999999987432 111 0111111000123578899999999884 5555678888
Q ss_pred CCCceeeeecCCCC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeE----------------EEecee
Q 007306 484 PTLNHTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC----------------QINLTA 540 (608)
Q Consensus 484 ~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~----------------~~~~~~ 540 (608)
.+.++. .++. .| ...+.+++|-.|.. +++|+.+-.|++|.+....... .+....
T Consensus 274 ~S~R~~-V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 274 ISQRCF-VLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred ecccce-eEec-cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 765542 2222 12 23466778876554 9999999999999986321111 111112
Q ss_pred eccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccCCC
Q 007306 541 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 541 ~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~ 592 (608)
.+..||.+ - +..|.|+| ...+|++.+-...++||....-. |....|
T Consensus 351 ~VLrGHRS-v--~NQVRF~~-H~~~l~SSGVE~~~KlWS~~r~P--~~~D~~ 396 (609)
T KOG4227|consen 351 TVLRGHRS-V--PNQVRFSQ-HNNLLVSSGVENSFKLWSDHRLP--WSYDLP 396 (609)
T ss_pred EEEecccc-c--ccceeecC-CcceEeccchhhheeccccccCC--cccCCc
Confidence 23446633 2 44899999 67899999999999999875422 555444
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.6e-17 Score=166.01 Aligned_cols=332 Identities=17% Similarity=0.180 Sum_probs=219.4
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccC-CCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQL-INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~-~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..++||.++++|+|..||.|.+|.--. ......+..+ +.|.++|.+++||++|.+|++||..|.+.+|.+.+++.
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l----HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL----HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEE----EecccccceeEEecCCceEeecccceEEEEEeecCCCc
Confidence 357999999999999999999997543 2223334433 45999999999999999999999999999998877654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecC---C-----
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN---P----- 362 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~---~----- 362 (608)
++++ .-.++|..+.++ +.+.+... |+.|.+....+.....++.+ .
T Consensus 286 -------------------qfLP-----RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k 341 (792)
T KOG1963|consen 286 -------------------QFLP-----RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTK 341 (792)
T ss_pred -------------------cccc-----ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccc
Confidence 1111 356889999999 55555555 99999988765544443332 2
Q ss_pred ---CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-----------ccccEEEEEEeCCCCEEEEEcC---
Q 007306 363 ---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----------HQNRITCLAYSLSLNVLVSSGA--- 424 (608)
Q Consensus 363 ---~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~s~~~--- 424 (608)
.+-.+.++++|-- .++-.+..|.|.+||+.+.+.+..+.. +...+++++.+..|.+++++-.
T Consensus 342 ~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d 421 (792)
T KOG1963|consen 342 TRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARID 421 (792)
T ss_pred ccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeeh
Confidence 2335678889955 888888999999999998876655431 2335677777888999988632
Q ss_pred -----CC--cEEEEECCCCceecccceee-eeccCCCCccceEEEE-EcCCCC-EEEE-EeCCcEEEEECCCCcee----
Q 007306 425 -----DA--QLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQ-FHPDQI-HLLS-IHEGQIDVYEAPTLNHT---- 489 (608)
Q Consensus 425 -----d~--~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~-~sp~~~-~l~~-~~d~~i~iwd~~~~~~~---- 489 (608)
|| .+++|-....... ..+.+ +...|. ..+...+ .+|... ..++ +.||.+++|-+...+.+
T Consensus 422 ~~~~~~~e~~LKFW~~n~~~kt--~~L~T~I~~PH~---~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~ 496 (792)
T KOG1963|consen 422 KFNFFDGEVSLKFWQYNPNSKT--FILNTKINNPHG---NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKS 496 (792)
T ss_pred hhhccCceEEEEEEEEcCCcce--eEEEEEEecCCC---ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCc
Confidence 33 5778876653322 22221 344554 3343444 444443 4555 69999999988322211
Q ss_pred ----eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC-CceeEEEeceeeccCCCcccccccEEEEEecCCCC
Q 007306 490 ----SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 564 (608)
Q Consensus 490 ----~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 564 (608)
......-|..++++++|+.||..|+.+ .|++|.+||..+ ..+....... ..+.++ .. ..+-.+ ..
T Consensus 497 s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~-~~~~~~----~~--~~~~~~--~~ 566 (792)
T KOG1963|consen 497 SNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSR-NWPIAE----LL--FTAQTQ--ND 566 (792)
T ss_pred cceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhcccccc-ccchHh----Hh--hhcccc--cc
Confidence 111112368899999999999766555 689999999998 4444333211 111111 00 111112 12
Q ss_pred EEEEEeCCCcEEEEeCCCCcccccc
Q 007306 565 RIALGLTNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 565 ~las~s~Dg~v~iW~~~~~~~~~~~ 589 (608)
..+.....+.+.+|++.+..-.|..
T Consensus 567 ~~~~~~~~~~l~~WNll~~~l~w~~ 591 (792)
T KOG1963|consen 567 GALVHATQQRLSVWNLLSMSLIWNL 591 (792)
T ss_pred cceeeccCceEehHhhhhhheecch
Confidence 2334445678999999999988843
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=2.2e-18 Score=166.11 Aligned_cols=256 Identities=14% Similarity=0.145 Sum_probs=184.9
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 337 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l 337 (608)
|.+.|+.++|.|....|++++.||++++|+++.... +..
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-----------------------------s~~------------ 331 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-----------------------------SAE------------ 331 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-----------------------------ccc------------
Confidence 788888888888888888888888888887632110 111
Q ss_pred EEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC----------ceEEEeeCcccc
Q 007306 338 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK----------KTKAKLKGHQNR 406 (608)
Q Consensus 338 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~----------~~~~~~~~~~~~ 406 (608)
..-+++.+|++|.++|.|+++.+++ .+++|+-||+|+.|++... .....+.||.+.
T Consensus 332 -------------~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda 398 (577)
T KOG0642|consen 332 -------------KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA 398 (577)
T ss_pred -------------cceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc
Confidence 1135677888999999999999999 9999999999999955421 233567899999
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC-CEEEEE-eCCcEEEEECC
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAP 484 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~~-~d~~i~iwd~~ 484 (608)
|+.+++++....|++++.||+++.|+...... ++......+ +.-.++.+-... .+.+++ .-+.--++++.
T Consensus 399 vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~----~~f~~~~e~----g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 399 VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP----CTFGEPKEH----GYPLSVDRTSSRPAHSLASFRFGYTSIDDME 470 (577)
T ss_pred eeeeeecccccceeeecCCceEEeeccCCcCc----cccCCcccc----CCcceEeeccchhHhhhhhcccccccchhhh
Confidence 99999999999999999999999999876432 111122222 234456655433 222222 33444445554
Q ss_pred CCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEe
Q 007306 485 TLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 559 (608)
Q Consensus 485 ~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 559 (608)
.+..+..+.... ....+..+.+.|.+.+.+++.+|+.|+++|..+++++.....+ .+.++++++.
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~----------~~svtslai~ 540 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH----------KDSVTSLAID 540 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec----------cceecceeec
Confidence 444443332211 1345777888999999999999999999999999998877632 3346699999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 560 PLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
| +|.+|++++.|+.|++|++....+.
T Consensus 541 ~-ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 541 P-NGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred C-CCceEEeecCCceeehhhccchhee
Confidence 9 8999999999999999999776553
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=1.2e-17 Score=154.07 Aligned_cols=227 Identities=12% Similarity=0.142 Sum_probs=170.5
Q ss_pred CCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-
Q 007306 256 NSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s- 333 (608)
.||+++|..++|+| +...+|+||.|.+|.||++..+..... .. +.+. ...+|...|.-++|+
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------lt--epvv--~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LT--EPVV--ELYGHQRRVGLVQWHP 141 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cc--cceE--EEeecceeEEEEeecc
Confidence 56999999999999 566799999999999999877654211 11 1111 111799999999999
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccc-cEE
Q 007306 334 --GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT 408 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~ 408 (608)
.+.|++++ |.+|.+||+.+|+.+-++. |...|.+++|+.|| ++++.+.|+.|+|||.++++.+..-.+|.+ .-.
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPA 220 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcc
Confidence 77888888 9999999999999998888 99999999999999 999999999999999999999988777764 344
Q ss_pred EEEEeCCCCEEEEEc---CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEEC
Q 007306 409 CLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 483 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~ 483 (608)
.+.|-.+|..+-+|- .+..+-+||..+-+.. ..++++. . . +.|.---+.||.+.++. | .|+.|+.|.+
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP--~~~~elD-t-S---nGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP--IALQELD-T-S---NGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCc--ceeEEec-c-C---CceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 566888888555543 3678999998774321 1122111 1 1 45666667899888887 6 8999999999
Q ss_pred CCCce----eeeecCCCCCCCeEEEEEecC
Q 007306 484 PTLNH----TSQLVPDKMDLPITYATYSCD 509 (608)
Q Consensus 484 ~~~~~----~~~~~~~~~~~~v~~~~~s~~ 509 (608)
....+ +.+|.. ..+-..+.|-|.
T Consensus 294 t~d~P~~hyln~f~S---~epQRG~g~mPK 320 (472)
T KOG0303|consen 294 TNEPPFVHYLNTFSS---KEPQRGMGFMPK 320 (472)
T ss_pred cCCCceeEEeccccc---CCcccccccccc
Confidence 76553 233322 444555666554
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=8.5e-18 Score=154.98 Aligned_cols=201 Identities=11% Similarity=0.118 Sum_probs=162.7
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCC-------ceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEE
Q 007306 322 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILV 388 (608)
Q Consensus 322 ~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~v 388 (608)
||.++|..++|+ ++.+|+|+ |.+|.||.+..+ +.+..+.+|...|.-++|+|.. .|++++.|.+|.+
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~i 158 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSI 158 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEE
Confidence 799999999999 77999999 999999998653 4567788999999999999998 8999999999999
Q ss_pred EeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 389 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 389 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
||+.+|+.+-++. |...|.++.|+.||.++++.+.|+.|+|||.++++..... .+|.+ ..-..+.|-.+|.
T Consensus 159 Wnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~------~~heG--~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 159 WNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG------VAHEG--AKPARAIFLASGK 229 (472)
T ss_pred EeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec------ccccC--CCcceeEEeccCc
Confidence 9999999888887 9999999999999999999999999999999996543322 34442 3345677888888
Q ss_pred EEEEE----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEE-EEcCCeEEEEeCCCCc
Q 007306 469 HLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLE 531 (608)
Q Consensus 469 ~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~ 531 (608)
.+.+| ++.++-+||..+.+.-..+..-+....|.---|.+|.+.++. |-.|+.|+-|.+....
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 55554 578999999876543222222233666776778898888775 5568999999998765
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.78 E-value=6.9e-16 Score=153.48 Aligned_cols=271 Identities=13% Similarity=0.134 Sum_probs=172.8
Q ss_pred EEeecCCeEEEeeccCCCCCCceeeEe-ecCCCCCCcEEEEEEeeCCCEEEEEeC-CCcEEEEecCCCcceeeeccccee
Q 007306 226 VCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNME 303 (608)
Q Consensus 226 ~~~~~d~~i~iWd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~ 303 (608)
++...++.|++|++.. .+...... ++ +.+....++++|+|++|++++. ++.|.+|++......
T Consensus 6 ~~~~~~~~I~~~~~~~---~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--------- 70 (330)
T PRK11028 6 IASPESQQIHVWNLNH---EGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--------- 70 (330)
T ss_pred EEcCCCCCEEEEEECC---CCceeeeeEEe---cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---------
Confidence 4446789999999963 12222111 21 3456778999999999877654 788888887522110
Q ss_pred eEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC-Cc---eeeEecCCCCCeEEEEEcCCC
Q 007306 304 SQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQ---TLATFANPPPIATYFILLPQD 375 (608)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~ 375 (608)
...... ........++|+ ++++++++ ++.|.+|++++ +. .+..+. +.....+++++|++
T Consensus 71 ---------~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 71 ---------TFAAES---PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred ---------EEeeee---cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence 001100 122345678898 77888877 78999999974 32 222222 22345678899999
Q ss_pred -eE-EEEeCCCcEEEEeCCCCceEEE-----ee-CccccEEEEEEeCCCCEEEEEcC-CCcEEEEECCC--Cceecccce
Q 007306 376 -LF-AFGFDDSSILVHCPCTKKTKAK-----LK-GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKFL 444 (608)
Q Consensus 376 -~l-~~~~~d~~i~vwd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~--~~~~~~~~~ 444 (608)
++ ++...++.|.+||+.+...+.. .. ........++|+|+|++++++.. +++|.+||++. ++......+
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 55 5556679999999976332211 11 12234678999999999888776 89999999974 221111111
Q ss_pred eeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 445 HSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 445 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
......... ......+.++|++++++++ .++.|.+|++.... .+..+.. ......+.++|||++|+++..
T Consensus 218 ~~~p~~~~~-~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 218 DMMPADFSD-TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred ecCCCcCCC-CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEEc
Confidence 111111000 0223468999999999985 46899999985432 2233322 234557899999999998776
Q ss_pred -CCeEEEEeCC
Q 007306 519 -SGHVKVFDTS 528 (608)
Q Consensus 519 -dg~i~iwd~~ 528 (608)
+++|.+|+++
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8999999875
No 182
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.7e-17 Score=156.06 Aligned_cols=208 Identities=16% Similarity=0.206 Sum_probs=149.9
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.||++-|.|+.|+.+|.+|++||.|-.+.|||.-..+. +-. +..||...|.++.|-
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl------------lhs----------I~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL------------LHS----------ISTGHTANIFSVKFVPY 104 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcce------------eee----------eecccccceeEEeeecc
Confidence 45999999999999999999999999999998754433 111 122799999999998
Q ss_pred --CCEEEEEe-CCcEEEEEcCC----------CceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 007306 334 --GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
+.++++|. |..|+++|+.. .+....+..|...|..++..|++ .+.++++||+|+-+|++......
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 66888888 99999999974 23345566888999999999999 89999999999999998632111
Q ss_pred ----------EeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCce--------e-----cccceeeeeccCCCC
Q 007306 399 ----------KLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK--------L-----CSKFLHSFQTGLVPE 454 (608)
Q Consensus 399 ----------~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~--------~-----~~~~~~~~~~~~~~~ 454 (608)
.+...--...|+..+| +..+|++|+.|-..++||.+...+ . .-.+++-+..+|...
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1111223456889999 456799999999999999542110 0 001222222233200
Q ss_pred c--------cceEEEEEcCCCCEEEEE-eCCcEEEEECCC
Q 007306 455 T--------TIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 485 (608)
Q Consensus 455 ~--------~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~ 485 (608)
. ..++-+.|+|+|..|+++ ....|+++|+..
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence 0 125668999999999987 445799998754
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.5e-16 Score=161.51 Aligned_cols=265 Identities=15% Similarity=0.195 Sum_probs=185.4
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCC
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS 310 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 310 (608)
+.+.+|++.+... .+.. +. -...|+|++|+| +..+++.|..+|.|.+||+..+.... .
T Consensus 222 ~~~~vW~~~~p~~-Pe~~---~~---~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------------~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNT-PELV---LE---SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------------P 280 (555)
T ss_pred ceEEEEecCCCCC-ceEE---Ee---cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC--------------C
Confidence 4799999987421 2222 22 378999999999 45667777789999999998776411 1
Q ss_pred CCeeeeccccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCce------eeEec------CCCCCeEEEEEcC
Q 007306 311 SKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT------LATFA------NPPPIATYFILLP 373 (608)
Q Consensus 311 ~~~~~~~~~~~~~~~~v~~v~~s----~~~l~s~~-d~~i~vwd~~~~~~------~~~~~------~~~~~v~~~~~~~ 373 (608)
.+... ....|..+|..+.|. +.-+++++ ||.|..|+++.-.. ..... .....+++++|.+
T Consensus 281 s~ls~---~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~ 357 (555)
T KOG1587|consen 281 SGLSA---LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP 357 (555)
T ss_pred ccccc---ccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeecc
Confidence 11111 111599999999998 44588888 99999998864222 11111 1234678999998
Q ss_pred CC--eEEEEeCCCcEEEEeCCCCc--------eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 374 QD--LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 374 ~~--~l~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
.. .+++|+++|.|.--+....+ ....+..|.++|.++.++|=+..++..+.|.++++|..... ..+
T Consensus 358 ~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~----~~P 433 (555)
T KOG1587|consen 358 TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI----ASP 433 (555)
T ss_pred CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC----CCc
Confidence 88 99999999998874433221 12345568899999999995554444444999999987631 234
Q ss_pred eeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS 519 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d 519 (608)
+. ....+. ..+++++|||....+++ . .+|.|.+||+... .++.+... +......+.|+++|+.|++|...
T Consensus 434 l~-~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~ 507 (555)
T KOG1587|consen 434 LL-SLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDAN 507 (555)
T ss_pred ch-hhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCC
Confidence 44 233333 46999999999866665 4 6899999998643 34444433 25667788899999999999999
Q ss_pred CeEEEEeCCCC
Q 007306 520 GHVKVFDTSTL 530 (608)
Q Consensus 520 g~i~iwd~~~~ 530 (608)
|.+++|++...
T Consensus 508 G~~~~~~l~~~ 518 (555)
T KOG1587|consen 508 GTTHILKLSES 518 (555)
T ss_pred CcEEEEEcCch
Confidence 99999999643
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=3.9e-17 Score=144.63 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=181.1
Q ss_pred CCCCceeEeecCCCCeEEEeecC--------CeEEEeeccCCCCCC-----ceeeEeecCCCCCCcEEEEEEeeCCCEEE
Q 007306 209 DNNQSRESTSLPDADSAVCAKSL--------EKSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHSGDFLV 275 (608)
Q Consensus 209 ~~~~~~~~~~s~dg~~l~~~~~d--------~~i~iWd~~~~~~~~-----~~~~~~l~~~~h~~~V~~~~fsp~g~~l~ 275 (608)
+......++-+|-.+.+.+...+ -.+.||.+.....+. ++... |+ ..+-+.|.|+.|.|++..++
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~-Ld-teavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS-LD-TEAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc-CC-HHHhCceeeEEEcCCCCeeE
Confidence 34444556677766654443222 237799987543332 22211 22 12456999999999999988
Q ss_pred EEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----CCEEEEEeCCcEEEEEcC
Q 007306 276 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSASGGKISIFSLE 351 (608)
Q Consensus 276 s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~~l~s~~d~~i~vwd~~ 351 (608)
+-. |..|.+|++.....+.. .+-...+ .++....++-+|+ ++.+++.+|+++..||+.
T Consensus 140 sm~-dn~i~l~~l~ess~~va--------ev~ss~s---------~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKIVA--------EVLSSES---------AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred Eec-cCceEEEEcccCcchhe--------eeccccc---------ccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 876 88999999877654211 0000000 0245556677887 789999999999999999
Q ss_pred CCceeeEec-CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCC-CCEEEEEcCCC
Q 007306 352 TFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS-LNVLVSSGADA 426 (608)
Q Consensus 352 ~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~ 426 (608)
+.++...++ .|...|..+.|+|+. +|++|++||.|++||.+.. .+++.+.+|...|.++.|+|. .+++++|+.|.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCc
Confidence 887777765 788899999999998 9999999999999998864 577899999999999999994 46788999999
Q ss_pred cEEEEECCCCce-------------------ecccceee----eeccCCCCccceEEEEEcCCCCEEEE--EeCCcEEEE
Q 007306 427 QLCVWDAVGWKK-------------------LCSKFLHS----FQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQIDVY 481 (608)
Q Consensus 427 ~i~vwd~~~~~~-------------------~~~~~~~~----~~~~~~~~~~~v~~v~~sp~~~~l~~--~~d~~i~iw 481 (608)
.|.+|...+-.. .+.++++. .+..|. ..|.+++||.-..++++ +.||.+.|=
T Consensus 282 ~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRviIs 358 (370)
T KOG1007|consen 282 AVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVIIS 358 (370)
T ss_pred eeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEEee
Confidence 999997653210 01122322 344565 78999999998888887 589998886
Q ss_pred ECC
Q 007306 482 EAP 484 (608)
Q Consensus 482 d~~ 484 (608)
.+.
T Consensus 359 ~V~ 361 (370)
T KOG1007|consen 359 SVP 361 (370)
T ss_pred cCC
Confidence 654
No 185
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.1e-17 Score=161.24 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=184.0
Q ss_pred cccCCCCceeEeecCCCCeEEEeecCCeEEEeeccCCCC---CCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCc
Q 007306 206 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINE---PSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 282 (608)
Q Consensus 206 ~~~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~---~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~ 282 (608)
+..+..|.++..|.|-...|++++.||++++|+++.... ......+++ .+|.++|.|++.++++..+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf--raH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF--RAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE--ecccCceEEEEecCCceEEEeeccCce
Confidence 444555666678889999999999999999999943221 122233445 349999999999999999999999999
Q ss_pred EEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEe
Q 007306 283 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 359 (608)
Q Consensus 283 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~ 359 (608)
|+.|++..+.- -+|......+...+. ||.+.|+.++++ ...|++|+ ||+++.|+...... .++
T Consensus 368 I~~w~~p~n~d------------p~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 368 IRCWNLPPNQD------------PDDSYDPSVLSGTLL-GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred eeeeccCCCCC------------cccccCcchhcccee-ccccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence 99998873322 222222222222222 799999999999 66799998 99999999876655 334
Q ss_pred cCC--CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeC-------ccccEEEEEEeCCCCEEEEEcCCCcE
Q 007306 360 ANP--PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-------HQNRITCLAYSLSLNVLVSSGADAQL 428 (608)
Q Consensus 360 ~~~--~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~s~~~d~~i 428 (608)
... .+-..++.+-... +.++...-+.-.+++...+..+..+.. -...+..+.++|.+.+.+++..|+.|
T Consensus 434 ~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence 322 2223455554443 333333334444445554444444432 12457788999999999999999999
Q ss_pred EEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeec
Q 007306 429 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV 493 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 493 (608)
+++|..+++. +. -...|. ..++++++.|+|-+|+++ .|+.+++|.+....++....
T Consensus 514 r~~dn~~~~~-----l~-s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 514 RFFDNKTGKI-----LH-SMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred eccccccccc-----ch-heeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence 9999998543 33 223344 589999999999999995 99999999997766665554
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=2.2e-15 Score=149.88 Aligned_cols=242 Identities=11% Similarity=0.037 Sum_probs=157.9
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcC-CCce--eeEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCC-C
Q 007306 325 DSISCFALR--GSHLFSAS--GGKISIFSLE-TFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCT-K 394 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~~i~vwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vwd~~~-~ 394 (608)
+....++++ +++|++++ ++.|.+|++. +++. ..... ..+....++++|++ .+++++ .++.|.+|++.+ +
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 456678888 77777765 7899999996 3432 22222 23356789999999 666555 588999999864 3
Q ss_pred c---eEEEeeCccccEEEEEEeCCCCEEEEE-cCCCcEEEEECCCCceecc---cceeeeeccCCCCccceEEEEEcCCC
Q 007306 395 K---TKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCS---KFLHSFQTGLVPETTIVNHIQFHPDQ 467 (608)
Q Consensus 395 ~---~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~v~~sp~~ 467 (608)
. .+..+. +.....+++++|++++++++ ..++.|.+||+.+...... .... ...+ .....++|+|+|
T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~-~~~g-----~~p~~~~~~pdg 186 (330)
T PRK11028 114 IPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT-TVEG-----AGPRHMVFHPNQ 186 (330)
T ss_pred CCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee-cCCC-----CCCceEEECCCC
Confidence 2 223232 23346778899999988554 4569999999976321111 0111 2222 346789999999
Q ss_pred CEEEEE--eCCcEEEEECCC--Cc--eeeeecCCC----CCCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCceeEEE
Q 007306 468 IHLLSI--HEGQIDVYEAPT--LN--HTSQLVPDK----MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 468 ~~l~~~--~d~~i~iwd~~~--~~--~~~~~~~~~----~~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~ 536 (608)
++++++ .++.|.+|++.. ++ .+..+.... +......+.++|+|++++++.. ++.|.+|++........+
T Consensus 187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~ 266 (330)
T PRK11028 187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF 266 (330)
T ss_pred CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence 999884 479999999973 32 333332110 1223346889999999999865 689999999654322222
Q ss_pred eceeeccCCCcccccccEEEEEecCCCCEEEEEeC-CCcEEEEeCCC
Q 007306 537 NLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 582 (608)
Q Consensus 537 ~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg~v~iW~~~~ 582 (608)
..+.. .| ..+..++++| |+++|++++. +++|.+|++..
T Consensus 267 ~~~~~--~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 267 EGHQP--TE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred eEEEe--cc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcC
Confidence 21111 12 1233789999 7888887764 89999998853
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.6e-16 Score=163.45 Aligned_cols=295 Identities=15% Similarity=0.149 Sum_probs=201.8
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----C
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----G 334 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~ 334 (608)
..+-..+.|+|-...++++...-.|++||++.++... -|+ ++. .....|+.+.+- .
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~----------~F~--n~~--------~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLN----------GFD--NGA--------FPDTRVSDLELINEQDD 1123 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceec----------ccc--CCC--------CCCCccceeeeecccch
Confidence 3456678899988889998888899999998876511 111 111 145678888887 4
Q ss_pred CEEEEEe-CCcEEEEEcCC-----CceeeEecC-------CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 335 SHLFSAS-GGKISIFSLET-----FQTLATFAN-------PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
.++++|+ ||.|+||+-.. .+.+..+.+ ..+.-.-+.|.... +|+++++-..|+|||.....++..+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 5788888 99999997532 223332221 11112346787776 8888888899999999887776655
Q ss_pred eC-ccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC-EEEE-EeCC
Q 007306 401 KG-HQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEG 476 (608)
Q Consensus 401 ~~-~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~-~~d~ 476 (608)
.. ....|+++.-+. .|+.+++|..||.|++||.+...... .+. ....|... .+|..+.+.+.|- .|++ +.+|
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds--~v~-~~R~h~~~-~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS--LVC-VYREHNDV-EPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc--cce-eecccCCc-ccceeEEeecCCCcceeeeccCC
Confidence 43 345566665443 57999999999999999998754322 222 34445410 2388999988764 3666 6999
Q ss_pred cEEEEECCCCceeeeecCCCC---CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEece-eeccCCCcccccc
Q 007306 477 QIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT-AYAQPGTISLELY 552 (608)
Q Consensus 477 ~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~g~~~~~v~ 552 (608)
.|++||++.......+....| .+..+++..+++...+|+|+. +.|.||++...+ +..+... .|. |.....
T Consensus 1280 ~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~--~q~~gs-- 1353 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFM--GQRIGS-- 1353 (1387)
T ss_pred eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCcccc--cCcCCC--
Confidence 999999986422222211111 235999999999999999998 999999997544 3333322 222 211222
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 553 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 553 ~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
+.+++||| -.-++|.|+.|.+|.||....++
T Consensus 1354 ~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1354 VSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 35999999 67899999999999999987654
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=1.8e-17 Score=161.26 Aligned_cols=249 Identities=18% Similarity=0.169 Sum_probs=179.5
Q ss_pred ecCCCCeEEE--eecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcce
Q 007306 218 SLPDADSAVC--AKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 218 ~s~dg~~l~~--~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
|..+.+++|. ++.-|.|-|+++.. ++.+-.-.+++-.....|+.+.|.| |...||.++.||.|++|.+..+...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~---PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNE---PGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCC---CCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 5555555554 45678899999875 5554433344444677899999999 6678999999999999987655430
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCC
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ 374 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 374 (608)
. .+......+..|...|+++.|+|-
T Consensus 664 ------------------------------e-------------------------~~~tPe~~lt~h~eKI~slRfHPL 688 (1012)
T KOG1445|consen 664 ------------------------------E-------------------------NEMTPEKILTIHGEKITSLRFHPL 688 (1012)
T ss_pred ------------------------------c-------------------------ccCCcceeeecccceEEEEEecch
Confidence 0 012344556788999999999997
Q ss_pred C--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC
Q 007306 375 D--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 452 (608)
Q Consensus 375 ~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 452 (608)
. .|++++.|.+|++||+.+++....+.+|.+.|..++|+|+|+.+++.+.||+|++|..++++ .+++ ++..
T Consensus 689 AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e----~pv~---Eg~g 761 (1012)
T KOG1445|consen 689 AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE----QPVY---EGKG 761 (1012)
T ss_pred hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC----Cccc---cCCC
Confidence 7 89999999999999999999999999999999999999999999999999999999998854 2332 2322
Q ss_pred CCccceEEEEEcCCCCEEEE-Ee----CCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEE
Q 007306 453 PETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKV 524 (608)
Q Consensus 453 ~~~~~v~~v~~sp~~~~l~~-~~----d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~i 524 (608)
+....-..|.|--+|+++++ |. ..+|.+||..+. .++.+..... .-.+.--.+.+|.. ++++|-.|..|++
T Consensus 762 pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKGD~~v~~ 840 (1012)
T KOG1445|consen 762 PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKGDRFVNM 840 (1012)
T ss_pred CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-cCccccccccCCCceEEEecCCCceEEE
Confidence 21133446888899999987 53 467999997653 3333332211 11222223455555 5667888999999
Q ss_pred EeCCCCce
Q 007306 525 FDTSTLEL 532 (608)
Q Consensus 525 wd~~~~~~ 532 (608)
|.+-....
T Consensus 841 yEv~~esP 848 (1012)
T KOG1445|consen 841 YEVIYESP 848 (1012)
T ss_pred EEecCCCc
Confidence 99876543
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=3e-15 Score=137.49 Aligned_cols=237 Identities=13% Similarity=0.164 Sum_probs=176.5
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 337 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l 337 (608)
....+..+.|+.+...|..|+.||. ++++...... .+... .....|--+-|+..++
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k------------~~~~~-----------~~~~~IvEmLFSSSLv 59 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK------------CFSKD-----------TEGVSIVEMLFSSSLV 59 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHH------------hhccc-----------CCCeEEEEeeccccee
Confidence 3556777789999998888888875 4555433321 11100 1223455556666777
Q ss_pred EEEe-C--CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeC---ccccEEEEE
Q 007306 338 FSAS-G--GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLA 411 (608)
Q Consensus 338 ~s~~-d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~ 411 (608)
|..+ + ..+++.+++.+..+..+. ....|.++.++.+ .|+++-.+ .|+|||+++.+.+.++.. +...+.+++
T Consensus 60 aiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~-RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 60 AIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK-RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc-eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeec
Confidence 7777 4 469999998888777765 4556778888776 45555544 499999999998887754 445566767
Q ss_pred EeCCCCEEEEEc--CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCC-cEEEEECCCCc
Q 007306 412 YSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPTLN 487 (608)
Q Consensus 412 ~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~-~i~iwd~~~~~ 487 (608)
+++.+.+++.-+ ..|.|.+||+.+ .+++. ....|. +.+.+++|+++|.+||++ ..| .|||+.+.+|+
T Consensus 137 ~n~~n~ylAyp~s~t~GdV~l~d~~n-----l~~v~-~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~ 207 (391)
T KOG2110|consen 137 PNNANCYLAYPGSTTSGDVVLFDTIN-----LQPVN-TINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ 207 (391)
T ss_pred cCCCCceEEecCCCCCceEEEEEccc-----ceeee-EEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCcc
Confidence 777777888644 368999999988 34555 455888 899999999999999995 445 48999999999
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
.+..|+-+.....|.+++|+|++++|++.|..++|+||.++..
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999987655677999999999999999999999999998753
No 190
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=9.3e-18 Score=146.74 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=177.6
Q ss_pred CCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 007306 322 DPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 322 ~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
+|.+.|+++.|. +.+|++|. -|.|++|++.+.+....++ .+...|+.+..-|++.+.+-+.|..+.+|++..+..+.
T Consensus 12 p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 588999999999 88899999 8999999999999888888 56778888888887788888999999999987532111
Q ss_pred E--------------e---------------------------------------eCccccEEEEEEeC-CCC--EEEEE
Q 007306 399 K--------------L---------------------------------------KGHQNRITCLAYSL-SLN--VLVSS 422 (608)
Q Consensus 399 ~--------------~---------------------------------------~~~~~~v~~~~~~~-~~~--~l~s~ 422 (608)
. + .+..+.+.|..+.. +++ ++++|
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 0 0 00112344444322 222 46778
Q ss_pred cCCCcEEEEECCCCceeccc----ceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCC--Ccee--eeec
Q 007306 423 GADAQLCVWDAVGWKKLCSK----FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT--LNHT--SQLV 493 (608)
Q Consensus 423 ~~d~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~--~~~~--~~~~ 493 (608)
..+|.+.+||+.++...-.. .+..-...|. .+|.++.+.+.-..=++ |.+..+..|++.. +.+. ..+.
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~ 248 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT 248 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE
Confidence 89999999999986322111 1111223444 68999998865443344 4667788888753 2221 1111
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCC
Q 007306 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 573 (608)
Q Consensus 494 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 573 (608)
. ..-.|..+.+-||++.+|+++.|+.||||+.++..++..+..| ...++ +++|+| |.+++|++|.|+
T Consensus 249 l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--------sagvn--~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 249 L--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--------SAGVN--AVAFSP-DCELMAAASKDA 315 (323)
T ss_pred e--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--------hccee--EEEeCC-CCchhhhccCCc
Confidence 1 1456788899999999999999999999999999999998865 44455 999999 789999999999
Q ss_pred cEEEEeC
Q 007306 574 RVHVIEP 580 (608)
Q Consensus 574 ~v~iW~~ 580 (608)
+|.+|++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999986
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=3.1e-16 Score=163.92 Aligned_cols=251 Identities=13% Similarity=0.184 Sum_probs=170.9
Q ss_pred CCCCcEEEEEEeeCC-CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 257 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
-|...|..++.++.. .+++|||.||+|++|+...-... .....+...|+. -...+.++...
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---~~s~rS~ltys~-------------~~sr~~~vt~~~~ 1109 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---GGSARSELTYSP-------------EGSRVEKVTMCGN 1109 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---cceeeeeEEEec-------------cCCceEEEEeccC
Confidence 378888898888755 99999999999999998654320 011112223332 34567777777
Q ss_pred CCEEEEEe-CCcEEEEEcCCC-------ceeeEecCC--CCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 334 GSHLFSAS-GGKISIFSLETF-------QTLATFANP--PPIATYFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~-------~~~~~~~~~--~~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
++.+|.++ ||.|++.+++.. .+.+....+ ..-|..-++.... .++.+...+.|..||+++......+
T Consensus 1110 ~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1110 GDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 88888888 999999998752 122222222 2223333443322 7888889999999999987666554
Q ss_pred eC--ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC---CEEEE-E-
Q 007306 401 KG--HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ---IHLLS-I- 473 (608)
Q Consensus 401 ~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~---~~l~~-~- 473 (608)
+. ..+.|++++.+|.+++++.|+..|.+.+||++-+.. +.....++. .+++.+..+|-. ...++ +
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~-----i~sw~~P~~---~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP-----ILSWEHPAR---APIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce-----eecccCccc---CCcceEEeeccCCCCceEEEecc
Confidence 43 457899999999999999999999999999987432 222222232 578888777653 34444 3
Q ss_pred -eCCcEEEEECCCCceeeeecCCC-----------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 474 -HEGQIDVYEAPTLNHTSQLVPDK-----------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 474 -~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
..+.|.+|++.+|.+..++.... +.-.....++..-+.++++|+.|+.|+.||....+
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 46789999999987766665430 11122334444556789999999999999987544
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=6.8e-16 Score=137.01 Aligned_cols=265 Identities=13% Similarity=0.103 Sum_probs=185.3
Q ss_pred CeEEEeec----CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCC-----EEEEEeCCCcEEEEecCCCcc
Q 007306 223 DSAVCAKS----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-----FLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 223 ~~l~~~~~----d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~-----~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.+|+.|+. .+.|.|-.+... .++... .....|.-+++.+.|.|+.. +|||. +..+++|.+...+.
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~--s~e~~~--~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~ 133 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDED--SGELVE--DANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEES 133 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccC--CCceec--cCCCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCC
Confidence 37777773 466777766531 334332 11123888999999999873 45554 34799998864332
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc---eeeEecCCCCCe
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ---TLATFANPPPIA 366 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~---~~~~~~~~~~~v 366 (608)
... -+ .++..-....+..+++++.|+ .+++.+++ |-+..|||++++. ....+-.|...|
T Consensus 134 ~~~----------~~----~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 134 RVE----------LQ----SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred cee----------hh----hhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 111 00 000000111477899999999 67888899 9999999999863 356677999999
Q ss_pred EEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE-eeC--ccccEEEEEEeC-CCCEEEEEcCC-CcEEEEECCCCcee
Q 007306 367 TYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK-LKG--HQNRITCLAYSL-SLNVLVSSGAD-AQLCVWDAVGWKKL 439 (608)
Q Consensus 367 ~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~-~~~--~~~~v~~~~~~~-~~~~l~s~~~d-~~i~vwd~~~~~~~ 439 (608)
..++|...+ .|++.+.||+|++||++..+.-.. ++. ...+...++|++ |-+++|+-..| ..|.+.|++...
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~-- 277 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC-- 277 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--
Confidence 999999987 999999999999999987643322 222 245778899988 55777776665 569999998743
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCC-CEEEE-EeCCcEEEEECCCCc------eeeeecCCCCCCCeEEEEEec-CC
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLN------HTSQLVPDKMDLPITYATYSC-DG 510 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~-~~d~~i~iwd~~~~~------~~~~~~~~~~~~~v~~~~~s~-~~ 510 (608)
.++- ...+|. +.|+.++|.|.. ..|++ |.|.++.+||+...- ++..+. ..+.|..+.|++ .+
T Consensus 278 --tpva-~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 278 --TPVA-RLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQP 348 (364)
T ss_pred --ccee-hhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCC
Confidence 3444 456788 799999999975 56666 588899999986432 222332 267899999994 56
Q ss_pred CEEEEEEc
Q 007306 511 KCIYVSCK 518 (608)
Q Consensus 511 ~~l~sg~~ 518 (608)
.+++.+..
T Consensus 349 Dwiai~~~ 356 (364)
T KOG0290|consen 349 DWIAICFG 356 (364)
T ss_pred CEEEEEec
Confidence 78877753
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=2.7e-15 Score=137.86 Aligned_cols=239 Identities=15% Similarity=0.158 Sum_probs=171.7
Q ss_pred CCCCeEEEEEe-CC-EEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE
Q 007306 323 PKDSISCFALR-GS-HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 399 (608)
Q Consensus 323 ~~~~v~~v~~s-~~-~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~ 399 (608)
....+..+.|. +. .|..|+..-.++|+................|--+-|+..= .|+....-+.+++++.+.+..+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 34556677788 44 4555554456777776544422222223334444555543 333333334699999998888877
Q ss_pred eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc--CCCCccceEEEEEcCCCCEEEE-E--e
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG--LVPETTIVNHIQFHPDQIHLLS-I--H 474 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~l~~-~--~ 474 (608)
+. ....|.++.++. +.|++.-.+ .|+|||+++.+ .++++... +. ..+.++++++.+.+++. + .
T Consensus 84 ~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mk-----lLhTI~t~~~n~---~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 84 IF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMK-----LLHTIETTPPNP---KGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred Ee-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccce-----eehhhhccCCCc---cceEeeccCCCCceEEecCCCC
Confidence 76 556799999875 456655544 49999999843 33322222 21 45777777777789998 3 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe-EEEEeCCCCceeEEEeceeeccCCCccccccc
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 553 (608)
.|.|.+||+.+.+.+..+. .|.+.+-+++|+++|.+||++|+.|+ |||+.+.+|+.+..+.. |.. .+.+
T Consensus 152 ~GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR------G~~--~~~I 221 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR------GTY--PVSI 221 (391)
T ss_pred CceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC------Cce--eeEE
Confidence 6899999999999988887 47999999999999999999999986 79999999999998875 432 3344
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 554 LVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.+++|+| ++.+|++.|..++|+|+.+....
T Consensus 222 ySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 222 YSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 4999999 79999999999999999998754
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.8e-16 Score=143.86 Aligned_cols=276 Identities=9% Similarity=0.079 Sum_probs=184.6
Q ss_pred CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee--CCCEEEEEeCCCcEEEEecCCCcceeeeccc
Q 007306 223 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQSNKQSLEEENV 300 (608)
Q Consensus 223 ~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp--~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~ 300 (608)
..+|++-.+|.|+++|..+++.-.++ .+|...+..+.|.. ....+.+|+.||+|++||++.......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f-------k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~---- 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF-------KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESAR---- 109 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee-------cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhh----
Confidence 46788889999999999853222222 23788888999987 466789999999999999877654111
Q ss_pred ceeeEEeeCCCCeeeeccccCCCC-CCeEEEEEe--CCEEEEEe-----CCcEEEEEcCCCce-eeEe-cCCCCCeEEEE
Q 007306 301 NMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSAS-----GGKISIFSLETFQT-LATF-ANPPPIATYFI 370 (608)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~s--~~~l~s~~-----d~~i~vwd~~~~~~-~~~~-~~~~~~v~~~~ 370 (608)
..|. ++. .+..|++.. ++.+++|. +-.|.+||++..+. +..+ ..|...|+++.
T Consensus 110 ----~~~~-------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lr 172 (376)
T KOG1188|consen 110 ----ISWT-------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLR 172 (376)
T ss_pred ----eecc-------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEE
Confidence 1111 233 456677766 56677665 35799999987766 5554 48999999999
Q ss_pred EcCCC--eEEEEeCCCcEEEEeCCCCce---EEEeeCccccEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceecccce
Q 007306 371 LLPQD--LFAFGFDDSSILVHCPCTKKT---KAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFL 444 (608)
Q Consensus 371 ~~~~~--~l~~~~~d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 444 (608)
|+|.. +|++|+.||-|.+||+..... +...-.|...|.++.|..++ +.+.+-+...+..+|+++.+........
T Consensus 173 FHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 173 FHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred ecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 99998 999999999999999876421 12222377789999999877 4577888899999999988653222111
Q ss_pred eeeeccCC---CCccceEEEEEcCC-CCEEEE-Ee-CCcEEEEECC---CC---ceeeeecCCCCCCCeEEEEEecCCCE
Q 007306 445 HSFQTGLV---PETTIVNHIQFHPD-QIHLLS-IH-EGQIDVYEAP---TL---NHTSQLVPDKMDLPITYATYSCDGKC 512 (608)
Q Consensus 445 ~~~~~~~~---~~~~~v~~v~~sp~-~~~l~~-~~-d~~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~s~~~~~ 512 (608)
..+..+-. ..-..+... .+|. +...+. +. .+...++-+. ++ +.+..+.+ +|..-|.++.|...+.+
T Consensus 253 ~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 253 PDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDV 330 (376)
T ss_pred ccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccce
Confidence 10000000 000111111 2233 333333 33 4554444332 22 33333433 46778899999999999
Q ss_pred EEEEEcCCeEEEEeCC
Q 007306 513 IYVSCKSGHVKVFDTS 528 (608)
Q Consensus 513 l~sg~~dg~i~iwd~~ 528 (608)
+++|++||.+.+|..+
T Consensus 331 l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKVE 346 (376)
T ss_pred eeccCCCceEEEEecC
Confidence 9999999999999963
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=1.3e-17 Score=167.25 Aligned_cols=275 Identities=11% Similarity=0.107 Sum_probs=209.8
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.||...|.|+.|...|.++++|+.|..++||..++..+ ... ..||.+.|+.++.+
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---------------------lAs--~rGhs~ditdlavs~~ 243 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---------------------LAS--CRGHSGDITDLAVSSN 243 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhh---------------------hcc--CCCCccccchhccchh
Confidence 45999999999999999999999999999998766654 211 11899999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEE----eeC-ccccE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK----LKG-HQNRI 407 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~----~~~-~~~~v 407 (608)
+-++++++ |..|++|.+.++.++..+.+|.+.|++++|+|- .+.+.||++++||.+- ..+.. ++. ....+
T Consensus 244 n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~---~sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 244 NTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR---ASSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLV 319 (1113)
T ss_pred hhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc---ccCCCCCceEeccccc-cccccCCCCCCcccccce
Confidence 55778888 999999999999999999999999999999995 4778999999999871 11111 111 23556
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC-CEEEEE-eCCcEEEEECCC
Q 007306 408 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLSI-HEGQIDVYEAPT 485 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~~-~d~~i~iwd~~~ 485 (608)
.++.|..++..+++++.|+.-..|.+.... .+. ..+.-+.++.+- .+.++. .+..+.+|++.+
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~---~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~ 384 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQLA------------WRS---NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYT 384 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhHhh------------hhc---cceEEEeccccccccceeeeeeeEeeeeeccc
Confidence 777888888889999999998888665411 111 112222223232 333444 677899999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCE-EEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC
Q 007306 486 LNHTSQLVPDKMDLPITYATYSCDGKC-IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 564 (608)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 564 (608)
|...+...+ |...++.+.++|-... ..+++.||...|||+..|..+..+.. || .. +...+||+ ||.
T Consensus 385 g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~------gh-~k---l~d~kFSq-dgt 451 (1113)
T KOG0644|consen 385 GQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI------GH-GK---LVDGKFSQ-DGT 451 (1113)
T ss_pred chhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec------cc-ce---eeccccCC-CCc
Confidence 988777754 6889999999986654 45789999999999999988877652 43 22 34789999 788
Q ss_pred EEEEEeCCCcEEEEeCCCCcc
Q 007306 565 RIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 565 ~las~s~Dg~v~iW~~~~~~~ 585 (608)
.++...+-|.+.|.....+++
T Consensus 452 s~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eEecCCCCCceEEeccCCCcc
Confidence 888888889999988766554
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.8e-16 Score=143.81 Aligned_cols=293 Identities=10% Similarity=0.050 Sum_probs=206.5
Q ss_pred cccCCCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEE
Q 007306 206 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 285 (608)
Q Consensus 206 ~~~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~i 285 (608)
+.....|..++.||.++++||+|+.|..+++|+++..-.....+.+.+.++.|.+.|.|++|....+++++|+.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence 44566677788999999999999999999999987422111212223555668899999999999999999999999998
Q ss_pred EecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc-eee--Ee
Q 007306 286 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-TLA--TF 359 (608)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~-~~~--~~ 359 (608)
-|+++.+.+ .++. .....+.|+.+..+ ++.|++.+ ++.|.+||..... .+. ..
T Consensus 132 HDiEt~qsi----------~V~~-----------~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 132 HDIETKQSI----------YVAN-----------ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred eecccceee----------eeec-----------ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence 888776541 1111 01234588888888 88899888 8999999997644 222 22
Q ss_pred cCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEE---eeCc---cccEEEEEEeCCCCEEEEEcCCCcEEE
Q 007306 360 ANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAK---LKGH---QNRITCLAYSLSLNVLVSSGADAQLCV 430 (608)
Q Consensus 360 ~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~-~~~---~~~~---~~~v~~~~~~~~~~~l~s~~~d~~i~v 430 (608)
.........+.|+|.. +|++.+..+-+-+||++.... +.. +.+- ...-.++.|+|+|+.+.+.-....-.+
T Consensus 191 AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~ 270 (609)
T KOG4227|consen 191 ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLY 270 (609)
T ss_pred cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEE
Confidence 2345567788999988 889999999999999876431 111 1121 122356789999999988777666778
Q ss_pred EECCCCceecccceeeeeccCCC----CccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCc------------------
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVP----ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN------------------ 487 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~----~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~------------------ 487 (608)
||+-+.+ +.- +...|.+ ....+.+++|..|.. +++| .+-.|++|.+....
T Consensus 271 ~D~~S~R-----~~V-~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 271 FDFISQR-----CFV-LKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred eeeeccc-----cee-EeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 8887622 111 2223322 013466788876654 6665 55689999875211
Q ss_pred -----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 488 -----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 488 -----~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
.+..+. +|..-+..+.|+|...+|++.+-.+.++||.-.
T Consensus 344 ~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 344 IFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred heecceeEEEe--cccccccceeecCCcceEeccchhhheeccccc
Confidence 112222 468888999999999999999999999999753
No 197
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.74 E-value=1.1e-15 Score=137.98 Aligned_cols=303 Identities=13% Similarity=0.118 Sum_probs=198.9
Q ss_pred EeecCCCCeEEEe-ecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe-CCCcEEEEecCCCcc
Q 007306 216 STSLPDADSAVCA-KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWKWQSNKQ 293 (608)
Q Consensus 216 ~~~s~dg~~l~~~-~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s-~dg~i~iw~~~~~~~ 293 (608)
+.++.|..++..+ ..|+.|.+|++.. .+.... +.. ..+++.+++|||||+.++..+ -+-.|.+|.+.+...
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Q----pew~ck-Ide--g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQ----PEWYCK-IDE--GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeec----ceeEEE-ecc--CCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 3555555554443 4677888898873 444332 322 478899999999997666554 488899888766543
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--C--CcEEEEEcCCCceeeEecCCCCCeE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--G--GKISIFSLETFQTLATFANPPPIAT 367 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d--~~i~vwd~~~~~~~~~~~~~~~~v~ 367 (608)
..++ ..+..+..++|+ |++.+.++ | ..+.+..-.....++.++-.+-..+
T Consensus 127 -------------------~~~~-----~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt 182 (447)
T KOG4497|consen 127 -------------------YLLP-----HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT 182 (447)
T ss_pred -------------------EEec-----ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc
Confidence 1221 234556788898 77777777 4 2344443444555666666677778
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecc-----
Q 007306 368 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS----- 441 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----- 441 (608)
.+.|+||| .|++ ||.--.-.+..+. ..-.+..+.|+|.+++|+.|+.|+.+++.+--+++....
T Consensus 183 gieWsPdg~~laV---------wd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 183 GIEWSPDGNWLAV---------WDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred CceECCCCcEEEE---------ecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence 99999998 6654 4421111111221 224588899999999999999999998855433221100
Q ss_pred ----------------------ccee----------------------------eee--ccCCCCccceEEEEEcCCCCE
Q 007306 442 ----------------------KFLH----------------------------SFQ--TGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 442 ----------------------~~~~----------------------------~~~--~~~~~~~~~v~~v~~sp~~~~ 469 (608)
.++. ... .+...+...+.-++|++|..+
T Consensus 253 s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y 332 (447)
T KOG4497|consen 253 SYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY 332 (447)
T ss_pred hccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE
Confidence 0000 000 000001134667899999999
Q ss_pred EEEEeC---CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCC
Q 007306 470 LLSIHE---GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 546 (608)
Q Consensus 470 l~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~ 546 (608)
+++-.| +.+.+||++..+....+. ...+|....|+|....|+.......+++|.......+..-
T Consensus 333 ~aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP---------- 399 (447)
T KOG4497|consen 333 AATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP---------- 399 (447)
T ss_pred EeeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC----------
Confidence 999544 679999998877655553 3788999999999998888888888999998875444332
Q ss_pred cccccccEEEEEecCCCCEEEEEeCCCc
Q 007306 547 ISLELYPLVIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 547 ~~~~v~~~~v~~sp~d~~~las~s~Dg~ 574 (608)
.....+..+.|+- +|..++.++.|..
T Consensus 400 -~~GF~i~~l~W~~-~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 400 -KKGFNIQKLQWLQ-PGEFIVLCGKDAF 425 (447)
T ss_pred -CCCceeeeEEecC-CCcEEEEEcCCce
Confidence 1124466999999 7999999999864
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.2e-17 Score=167.51 Aligned_cols=236 Identities=22% Similarity=0.270 Sum_probs=186.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
+|..+|+|+.|. |.++++|+ |..++||.++++.++....+|.+.++.++.+.++ ++++++.|..|++|-+.++.++
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 799999999999 99999999 8999999999999999999999999999999999 9999999999999999999999
Q ss_pred EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC-CceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC
Q 007306 398 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE 475 (608)
Q Consensus 398 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d 475 (608)
..+.+|++.|++++|+|-. +.+.||++++||.+- .......+.. +.+. .-+.++.|-.++..+++ +.|
T Consensus 268 svLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~--~~~~----~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLK--FTEK----DLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred HHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCC--cccc----cceeeeeccccccccccccCC
Confidence 9999999999999999943 778899999999982 1111112222 1111 35677888888888888 477
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccE
Q 007306 476 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 554 (608)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 554 (608)
+.-..|.+..... +...+.-+.++.|- .+.+++-.+..+.+|++.+|.+.+.+. || .+.++
T Consensus 338 ~ea~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-------gh-sd~~y-- 399 (1113)
T KOG0644|consen 338 GEARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-------GH-SDEVY-- 399 (1113)
T ss_pred cccccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-------cc-cccee--
Confidence 8877777642211 11112222222222 456667778899999999999888775 44 66677
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 555 VIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 555 ~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
.+.+||-+.....+++.||+..|||+..|-+
T Consensus 400 vLd~Hpfn~ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 400 VLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred eeeecCCCcHhhhhccCCCceEeeecccCCc
Confidence 7899998888899999999999999987765
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=149.75 Aligned_cols=267 Identities=10% Similarity=0.104 Sum_probs=179.2
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---- 333 (608)
|...|.|+.|+.+...+.+++.+..+.-|++.+...... ......+.+ . -|.. ...-.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~-----------~~p~df~pt-~---~h~~---~rs~~~g~~ 74 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVA-----------KLPDDFVPT-D---MHLG---GRSSGGGKG 74 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhh-----------hCCcccCCc-c---cccc---ccccCCCCC
Confidence 788889999998887555554444444444443332111 000000000 0 0211 00111
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
...++.++ ||.+.+.+- .++..+.+..|.+.+.|-.|+||| -|+++++||.|++|. ++|-...++.....+|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 23455555 999998874 477788888999999999999999 999999999999998 44555555555677899999
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceee
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~ 490 (608)
|.|+.+.++.+. .+.+.+=.+... .+.++ ...|. +-|.++.|+|....+++ |.|-..++||.. |..+.
T Consensus 153 W~p~S~~vl~c~-g~h~~IKpL~~n----~k~i~--WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf 221 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ-GGHISIKPLAAN----SKIIR--WRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLF 221 (737)
T ss_pred ECCCCCceEEec-CCeEEEeecccc----cceeE--EeccC---cEEEEeecCccccceeecCCceeEEeeccc-Ccccc
Confidence 999887766543 344555444431 24444 45677 79999999999999999 589999999984 55544
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.- ..|..+|++++|.|+ +.++.|+. ++.++=..+ .+.+. .++||| ||..++.|+
T Consensus 222 ~S--~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~-------------------~GSif--nlsWS~-DGTQ~a~gt 275 (737)
T KOG1524|consen 222 TS--AAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPR-------------------VGSIF--NLSWSA-DGTQATCGT 275 (737)
T ss_pred cC--Chhccceeeeeeccc-cceeeeee-eeeeecCCC-------------------ccceE--EEEEcC-CCceeeccc
Confidence 33 347899999999999 55555543 334311111 22344 999999 899999999
Q ss_pred CCCcEEEEeCC
Q 007306 571 TNGRVHVIEPL 581 (608)
Q Consensus 571 ~Dg~v~iW~~~ 581 (608)
..|.|.+=-+-
T Consensus 276 ~~G~v~~A~~i 286 (737)
T KOG1524|consen 276 STGQLIVAYAI 286 (737)
T ss_pred cCceEEEeeee
Confidence 99988764443
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.71 E-value=6.2e-15 Score=149.89 Aligned_cols=245 Identities=13% Similarity=0.092 Sum_probs=174.0
Q ss_pred CCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCce--eeEe----cCCCCCeEEEEEcCCC---eEEEEeCCCcEEEE
Q 007306 323 PKDSISCFALR---GSHLFSAS-GGKISIFSLETFQT--LATF----ANPPPIATYFILLPQD---LFAFGFDDSSILVH 389 (608)
Q Consensus 323 ~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~--~~~~----~~~~~~v~~~~~~~~~---~l~~~~~d~~i~vw 389 (608)
-...|.|+.|+ .++++.|. +|+|.+||+..+.. ...+ ..|..+++.+.|..+- -|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 56889999999 66777777 99999999987655 2222 3688899999997765 49999999999999
Q ss_pred eCCCCce-E-----EEee------CccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCcee---cccceeeeeccCCC
Q 007306 390 CPCTKKT-K-----AKLK------GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVP 453 (608)
Q Consensus 390 d~~~~~~-~-----~~~~------~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~ 453 (608)
+++.-.. . .... .....+++++|.+ +-..++.|+.+|.|..-+-...+.. ..+... ....|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~-~~~~h~- 398 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS-TFITHI- 398 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc-cccccC-
Confidence 8765322 1 1111 1234688999988 5567899999999877333221111 111122 233444
Q ss_pred CccceEEEEEcCCCCEEEE-EeCCcEEEEECC-CCceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCCC
Q 007306 454 ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 454 ~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~ 530 (608)
++|+++.++|=+..++. +.|.+++||... ...++..+.. +...+++++|||... .++++..||.|.+||+...
T Consensus 399 --g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 399 --GPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred --cceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 79999999998766555 679999999987 5566655543 467799999999775 5667777999999999765
Q ss_pred ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 531 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 531 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
.......... + ... ...+.|++ .+..|+.|...|.+++|++..
T Consensus 475 ~~~Pv~s~~~----~--~~~--l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 475 DEEPVLSQKV----C--SPA--LTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccCCcccccc----c--ccc--cceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 4333322110 1 222 23788888 799999999999999999964
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=2.2e-15 Score=133.82 Aligned_cols=241 Identities=15% Similarity=0.218 Sum_probs=168.7
Q ss_pred ceeEeecCCCC-----eEEEeecCCeEEEeeccCCCCCCceeeEeecC---CCCCCcEEEEEEee-CCCEEEEEeCCCcE
Q 007306 213 SRESTSLPDAD-----SAVCAKSLEKSVNLKLQLINEPSECRTLLLPD---NSFGGRVVRLIYSH-SGDFLVALTQTATH 283 (608)
Q Consensus 213 ~~~~~~s~dg~-----~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~---~~h~~~V~~~~fsp-~g~~l~s~s~dg~i 283 (608)
...+.|.||.+ .||+ .+..+|+|.+.....+-++... |.. ..+..++++..|+. +-+++.+.|-|.+.
T Consensus 99 ~tK~~wiPd~~g~~pdlLAT--s~D~LRlWri~~ee~~~~~~~~-L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTC 175 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLAT--SSDFLRLWRIGDEESRVELQSV-LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTC 175 (364)
T ss_pred ccceEecCCccccCcchhhc--ccCeEEEEeccCcCCceehhhh-hccCcccccCCcccccccccCCcceeEeecccCeE
Confidence 33446778764 3444 3457999998742222222211 111 23677999999987 66788899999999
Q ss_pred EEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEe
Q 007306 284 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF 359 (608)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~ 359 (608)
.|||++++.. +.+.+.++ .|+..|..++|. -+.+++++ ||.|++||+..-+--..+
T Consensus 176 TiWdie~~~~------------------~~vkTQLI--AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII 235 (364)
T KOG0290|consen 176 TIWDIETGVS------------------GTVKTQLI--AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII 235 (364)
T ss_pred EEEEEeeccc------------------cceeeEEE--ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE
Confidence 9999877621 11111111 599999999999 34789988 999999999865443333
Q ss_pred c---CCCCCeEEEEEcCCC--eEEEEeCC-CcEEEEeCCCC-ceEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEE
Q 007306 360 A---NPPPIATYFILLPQD--LFAFGFDD-SSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVW 431 (608)
Q Consensus 360 ~---~~~~~v~~~~~~~~~--~l~~~~~d-~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vw 431 (608)
. ....+...++|++++ ++|+-..| ..|.|.|++.. .++..+++|.+.|+.++|.| ....+++++.|..+-+|
T Consensus 236 YE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 236 YEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred ecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEE
Confidence 2 224567889999988 77765555 47999999864 67788999999999999999 55789999999999999
Q ss_pred ECCCCce-ecccceeeeeccCCCCccceEEEEEcCC-CCEEEEEeCCcEEEE
Q 007306 432 DAVGWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIHEGQIDVY 481 (608)
Q Consensus 432 d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~d~~i~iw 481 (608)
|+...-. ....++.....+ +.|+.+.|++. ..+++++.++++.+.
T Consensus 316 Dl~q~~~~~~~dPilay~a~-----~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 316 DLQQMPRENGEDPILAYTAG-----GEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred ecccccccCCCCchhhhhcc-----ceeeeeeecccCCCEEEEEecCeeeEE
Confidence 9987332 111222212222 57999999965 678888777766553
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.8e-16 Score=146.86 Aligned_cols=198 Identities=17% Similarity=0.123 Sum_probs=150.0
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccccee
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
.+++|+++| .+++|+.||.+|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..+||+++++.....+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-- 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-- 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC--
Confidence 689999999 99999999999999977777777777799999999999999999999999 99999999963222111
Q ss_pred eeeccCCCCccceEEEEEcCCC---CE-EEEE--eCCcEEEEECCCCce---eeeecCCCCCCCeEEEEEecCCCEEEEE
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQ---IH-LLSI--HEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVS 516 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~---~~-l~~~--~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~sg 516 (608)
+.+.. .....+.|+.|+ .+ +++. ..+.|+.||+...+. .+..+.-.....|++++.|+||++++.|
T Consensus 225 --~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 225 --PFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred --Ccccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 11121 356678888776 32 2332 446677766543221 1111111125689999999999999999
Q ss_pred EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 517 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 517 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
+.||.|-|++..+-+.....+. .|...|+.+.|+| |.+++++.+.|....|..+.-
T Consensus 300 T~dGsVai~~~~~lq~~~~vk~---------aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRLQYVKE---------AHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ccCCcEEEEEeceeeeeEeehh---------hheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999998877665542 3334577999999 899999999999999988765
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=1.4e-15 Score=145.70 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=155.5
Q ss_pred CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEE
Q 007306 272 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIF 348 (608)
Q Consensus 272 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vw 348 (608)
..++.++.||.+.|-+-. +..-+.. ..|.+.+.+-.|+ |.-|++++ ||.|++|
T Consensus 76 d~~~i~s~DGkf~il~k~----------------------~rVE~sv--~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiW 131 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS----------------------ARVERSI--SAHAAAISSGRWSPDGAGLLTAGEDGVIKIW 131 (737)
T ss_pred ceEEEEcCCceEEEeccc----------------------chhhhhh--hhhhhhhhhcccCCCCceeeeecCCceEEEE
Confidence 467888889988775421 1111111 1699999999999 88888888 9999999
Q ss_pred EcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCc
Q 007306 349 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 349 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 427 (608)
.- +|-...++.....+|.|++|.|+. .++.+. .+.+.+=.+.....+-.++.|.+-|.++.|++..+.+++|+.|-.
T Consensus 132 Sr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k 209 (737)
T KOG1524|consen 132 SR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR 209 (737)
T ss_pred ec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee
Confidence 84 455555566677899999999999 555443 356666666666667788999999999999999999999999999
Q ss_pred EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 007306 428 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
.++||... ..+. ....|. .+|++++|.|+ +.++.++-++++ +..+ ..+.|..++||
T Consensus 210 fKvWD~~G------~~Lf-~S~~~e---y~ITSva~npd-~~~~v~S~nt~R------------~~~p-~~GSifnlsWS 265 (737)
T KOG1524|consen 210 FKIWDAQG------ANLF-TSAAEE---YAITSVAFNPE-KDYLLWSYNTAR------------FSSP-RVGSIFNLSWS 265 (737)
T ss_pred EEeecccC------cccc-cCChhc---cceeeeeeccc-cceeeeeeeeee------------ecCC-CccceEEEEEc
Confidence 99999876 4444 334455 78999999999 555555444444 2222 37889999999
Q ss_pred cCCCEEEEEEcCCeEEEE
Q 007306 508 CDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iw 525 (608)
+||..++.|+..|.+.+=
T Consensus 266 ~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 266 ADGTQATCGTSTGQLIVA 283 (737)
T ss_pred CCCceeeccccCceEEEe
Confidence 999999999998887653
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=4.6e-15 Score=133.72 Aligned_cols=207 Identities=12% Similarity=0.089 Sum_probs=157.1
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 338 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~ 338 (608)
..+|+|.+|++|+..+|.+..+..+.||.......
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~--------------------------------------------- 44 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL--------------------------------------------- 44 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCC---------------------------------------------
Confidence 56888888888888888887777887775433321
Q ss_pred EEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-CCc--eEEEeeCccccEEEEEEeC
Q 007306 339 SASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC-TKK--TKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 339 s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~-~~~--~~~~~~~~~~~v~~~~~~~ 414 (608)
.+...++..|...|++++|+|.. .|++|+.|..-++|... .++ +.-.+..++..++++.|+|
T Consensus 45 --------------w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP 110 (361)
T KOG1523|consen 45 --------------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP 110 (361)
T ss_pred --------------ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecC
Confidence 23456777899999999999999 99999999999999984 343 3344555888999999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECC-----C---
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-----T--- 485 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~-----~--- 485 (608)
.++.+++|+.-..|.||-++....- -.-+.+...+. +.|+++.|+|++-++++ +.|+..++|..- .
T Consensus 111 ~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPir---Stv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpa 185 (361)
T KOG1523|consen 111 KENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIR---STVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPA 185 (361)
T ss_pred cCceEEeccCccEEEEEEEecccce--ehhhhhCCccc---cceeeeeccCCcceecccccCcceeEEEEeeeccccCCC
Confidence 9999999999999999987653210 00000111222 78999999999999998 589999998731 1
Q ss_pred ----------CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 486 ----------LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 486 ----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
|.++.++. ...+.+..+.|+|+|..|+-.+.|..+.+=|.....
T Consensus 186 p~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 186 PTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 22333332 237889999999999999999999999999987765
No 205
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9.3e-15 Score=141.39 Aligned_cols=280 Identities=14% Similarity=0.119 Sum_probs=203.8
Q ss_pred ccCCCCceeEeecCCCCeE-EEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEE
Q 007306 207 FNDNNQSRESTSLPDADSA-VCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 285 (608)
Q Consensus 207 ~~~~~~~~~~~~s~dg~~l-~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~i 285 (608)
|.-+..+..+..+|||+|+ |+|-.-..|++||+.+. .+.++.+-....|.-.-.|.|-..++.-..|.+|.+
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL-------SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL-------SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccc-------eeeeeecccccceeEEEeccchhhheEeecCceeee
Confidence 3334444455899999976 55668899999999742 112333223455666666666666677777777753
Q ss_pred EecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEEcCCCceeeEecCC
Q 007306 286 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLATFANP 362 (608)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~d~~i~vwd~~~~~~~~~~~~~ 362 (608)
....|...... -...-..++++ ..+++.|+...|.-++++.|+.+..+...
T Consensus 121 ----------------------Hak~G~hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 121 ----------------------HAKYGRHYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ----------------------hhhcCeeeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccc
Confidence 22233322211 12233455666 33455555888999999999999999988
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC------ccc-----cEEEEEEeCCCCEEEEEcCCCcEEE
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG------HQN-----RITCLAYSLSLNVLVSSGADAQLCV 430 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~l~s~~~d~~i~v 430 (608)
.+.++++..++-. +|++|+.+|.|-.||.++...+..+.. |.+ .|+++.|+.+|-.+++|+.+|.+.+
T Consensus 175 ~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~i 254 (703)
T KOG2321|consen 175 SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLI 254 (703)
T ss_pred cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEE
Confidence 8999999999998 999999999999999998776665542 222 4999999999999999999999999
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCC--CCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
||+++. .++..-..+.. .+|..+.|.+. +..+++.....++|||-.+|+....+.. ...+..+|+-|
T Consensus 255 yDLRa~-----~pl~~kdh~~e---~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p 323 (703)
T KOG2321|consen 255 YDLRAS-----KPLLVKDHGYE---LPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVP 323 (703)
T ss_pred EEcccC-----CceeecccCCc---cceeeecccccCCCceEEecchHHhhhcccccCCceeeccc---cCCcCceeeec
Confidence 999983 34431122222 57889999776 4556666677899999999999887754 66699999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCC
Q 007306 509 DGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
++.+++++-+++.+..|=+..-
T Consensus 324 ~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 324 GSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred CCceEEEecCCCcceeEEcccc
Confidence 9999999999888877766543
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=2.9e-15 Score=143.80 Aligned_cols=245 Identities=15% Similarity=0.197 Sum_probs=165.2
Q ss_pred eEEEEEe--CCEEEEEeCCcEEEEEcCCCce----eeEecCCCCCeEEEEE-----cCCC-eEEEEeCCCcEEEEeCCCC
Q 007306 327 ISCFALR--GSHLFSASGGKISIFSLETFQT----LATFANPPPIATYFIL-----LPQD-LFAFGFDDSSILVHCPCTK 394 (608)
Q Consensus 327 v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~-----~~~~-~l~~~~~d~~i~vwd~~~~ 394 (608)
+....++ |.+|+..-...+.+|+...+.. +....-.....+|-+| .|++ -+++|-.-|.|.+.|....
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3344444 5666666666777887764222 1111111112233344 4567 8889999999999998764
Q ss_pred ceEEEeeC----ccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceec-----------ccceeeeeccC---CC--
Q 007306 395 KTKAKLKG----HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLC-----------SKFLHSFQTGL---VP-- 453 (608)
Q Consensus 395 ~~~~~~~~----~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~-----------~~~~~~~~~~~---~~-- 453 (608)
+..+.+.. .+..|+|+.|-|. ...++++-.+|.+++||........ ...+.+ ...+ .|
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t-~ksk~~rNPv~ 284 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT-SKSKKTRNPVA 284 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee-eeccccCCccc
Confidence 33222221 3478999999994 4556677789999999764211000 000000 0000 00
Q ss_pred ----CccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 454 ----ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 454 ----~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
..+.|..++|+|||++||+ +.||.++|||..+.+++..++. .-+...|++|||||+||++|++|..|.||.+.
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 0257889999999999998 8999999999998887666543 26789999999999999999999999999999
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecC----------------------------------C------------
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPL----------------------------------E------------ 562 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~----------------------------------d------------ 562 (608)
.++++.. || +|..||..|+|.|- +
T Consensus 363 erRVVAR---------Gq-GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~ 432 (636)
T KOG2394|consen 363 ERRVVAR---------GQ-GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS 432 (636)
T ss_pred cceEEEe---------cc-ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence 9988876 33 55566778888720 0
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCc
Q 007306 563 -PNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 563 -~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.-.|.+.+.|.++.+||+....
T Consensus 433 v~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 433 VTYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred eEEEeecccccceEEEEecchhh
Confidence 1257888999999999997643
No 207
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=7.6e-15 Score=132.59 Aligned_cols=272 Identities=14% Similarity=0.132 Sum_probs=183.8
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CC-EEEEE-
Q 007306 264 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSA- 340 (608)
Q Consensus 264 ~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~-~l~s~- 340 (608)
-++|||+|+|+|+++.- .+.|-|..+-+ +.+... --+.|..+.|. ++ +++++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq---------------------~~qlf~---cldki~yieW~ads~~ilC~~ 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQ---------------------LHQLFL---CLDKIVYIEWKADSCHILCVA 67 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhh---------------------HHHHHH---HHHHhhheeeeccceeeeeee
Confidence 46799999999998875 45444443332 222111 12456778888 33 44444
Q ss_pred e-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCC
Q 007306 341 S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 417 (608)
Q Consensus 341 ~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 417 (608)
. ++.|.+|++...+-...+.....++.+++|+||| .+.+...+-.|.+|.+.+.+... ++-....+..++|+|||+
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQ 146 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCc
Confidence 4 8999999999988888898888999999999999 67777889999999998866543 222334567888999998
Q ss_pred EEEEEcCC------------------------------------CcEEEEECCCCceecccceeeeeccCCCCccceEEE
Q 007306 418 VLVSSGAD------------------------------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHI 461 (608)
Q Consensus 418 ~l~s~~~d------------------------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 461 (608)
+.+..+.- ..+.+||--- ...+. .-+.+ -.+..+
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~L-----eykv~---aYe~~--lG~k~v 216 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVL-----EYKVY---AYERG--LGLKFV 216 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchh-----hheee---eeeec--cceeEE
Confidence 87655321 1233444221 01111 01111 357889
Q ss_pred EEcCCCCEEEEE-eCCcEEEEECCCCceeee-------------------------------------------------
Q 007306 462 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQ------------------------------------------------- 491 (608)
Q Consensus 462 ~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~------------------------------------------------- 491 (608)
+|+|.++++++| .|+.+++.+--+.+.+..
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 999999999995 898887755222111100
Q ss_pred -----------ecCC----CCCCCeEEEEEecCCCEEEEEEcC--CeEEEEeCCCCceeEEEeceeeccCCCcccccccE
Q 007306 492 -----------LVPD----KMDLPITYATYSCDGKCIYVSCKS--GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL 554 (608)
Q Consensus 492 -----------~~~~----~~~~~v~~~~~s~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 554 (608)
++.. .....+.-++||+|..|+++-... +.+.+||+...++...+.. .++|.
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ---------k~pir-- 365 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ---------KHPIR-- 365 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh---------cccee--
Confidence 0000 012356678999999999987554 7899999998887666543 34455
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 555 VIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 555 ~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
+..|+| ....|+.+.....+++|.+...
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCCc
Confidence 999999 6778888877788999998764
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=4.1e-14 Score=127.67 Aligned_cols=238 Identities=15% Similarity=0.226 Sum_probs=163.4
Q ss_pred eEEEEEe-C-CEEEEEeCCcEEEEEcCCCceeeEecCCCCCe--EEEEEcCCC-eEEEEeCC------CcEEEEeCCCCc
Q 007306 327 ISCFALR-G-SHLFSASGGKISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFDD------SSILVHCPCTKK 395 (608)
Q Consensus 327 v~~v~~s-~-~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~-~l~~~~~d------~~i~vwd~~~~~ 395 (608)
...++|+ + ..++++.|.-.++|+.+..+....-+.+.+++ .-+-| ..+ ..++|+.+ ..|.|||-...+
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 4458888 4 45666668889999987644322222222222 22222 223 34455544 479999977777
Q ss_pred eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-
Q 007306 396 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I- 473 (608)
Q Consensus 396 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~- 473 (608)
++.++. ...+|.++.+.++ .+++. ..+.|+||.....- +.+..+.....| ..+.+++-+.+..+|+. |
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~----k~l~~~et~~NP--kGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP----KLLHVIETRSNP--KGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh----hheeeeecccCC--CceEeecCCCCceEEEcCCC
Confidence 887776 6778999999875 34444 36899999987421 222211111112 23444444444455665 6
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe-EEEEeCCCCceeEEEeceeeccCCCcccccc
Q 007306 474 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH-VKVFDTSTLELRCQINLTAYAQPGTISLELY 552 (608)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 552 (608)
.-|+|.|-|+...+.-.......|...|.+++.+.+|..+|++|..|+ |||||..+|+++..+.. |.....++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR------G~d~A~iy 230 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR------GVDRADIY 230 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec------CCchheEE
Confidence 679999999976554212222358999999999999999999999986 89999999999999875 55556677
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 553 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 553 ~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
+++||| +..+||.+|+-|+|+|+.+....
T Consensus 231 --~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 231 --CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred --EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 999999 89999999999999999998754
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4.9e-14 Score=129.11 Aligned_cols=296 Identities=11% Similarity=0.058 Sum_probs=183.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+++++.-..++++..|-+|++++-... .+..++ +..+..|+|++|-|.+..-++.+.-+-|+||........
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lk------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLK------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA 175 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCCC-CCceec------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc
Confidence 3468887778899999999999998741 111122 124778999999996654444445567889987544321
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFI 370 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 370 (608)
.. .++.-....+++.+ ..+| .+|+++.|. |..+++++ |..|.|||+.++..+.......+.++-+.
T Consensus 176 ~r------~~~~~s~~~~qvl~---~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLk 245 (445)
T KOG2139|consen 176 NR------NIRMMSTHHLQVLQ---DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLK 245 (445)
T ss_pred cc------ccccccccchhhee---CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEE
Confidence 00 00000111111111 1145 789999999 88999999 78999999999988776655667888999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec-------cc
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-------SK 442 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-------~~ 442 (608)
|+||+ +|+++..|+..++|+.........+....+.|....|+|+|++|..+.. |.-++|.+.-..... .+
T Consensus 246 wSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 246 WSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccce
Confidence 99999 9999999999999965443222223334558999999999998765543 333455443211100 00
Q ss_pred cee--------eeeccCCCCccceEEEEEcCCCCEEEEEeC---------CcEEEEECCCCceeeeecCC-CCCCCeEEE
Q 007306 443 FLH--------SFQTGLVPETTIVNHIQFHPDQIHLLSIHE---------GQIDVYEAPTLNHTSQLVPD-KMDLPITYA 504 (608)
Q Consensus 443 ~~~--------~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d---------~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~ 504 (608)
.+. ++..+..--.+++.+++|.|.|.+|++... ..|.+||.+..-.+.-...+ ........+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 000 011111100157889999999999998522 23677887654433222111 112224455
Q ss_pred EEec---CCCEEEEEEcCCeEEEEeCC
Q 007306 505 TYSC---DGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 505 ~~s~---~~~~l~sg~~dg~i~iwd~~ 528 (608)
+|+| +|.+|..+-..|.+.-|++.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeE
Confidence 6664 56666666666777666543
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.5e-15 Score=142.06 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=155.2
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-
Q 007306 328 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG- 402 (608)
Q Consensus 328 ~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~- 402 (608)
.+++|+ |..+++++ ||++|+|+..+...+.....|...|.++.|+||| .|++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678888 78999999 9999999988777777788899999999999999 99999999 999999999976655442
Q ss_pred -ccccEEEEEEeCCC-----CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eC
Q 007306 403 -HQNRITCLAYSLSL-----NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 475 (608)
Q Consensus 403 -~~~~v~~~~~~~~~-----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d 475 (608)
.......+.|+.|+ ..++....-+.|+.||+..++........+....+ ..|++++.+++|++++.| .|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEeccC
Confidence 23345667787766 33344445677888888765542112222223333 379999999999999995 89
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 476 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
|.|-|++..+.+.++-++. .|...|+.+.|+||.+++++-+.|....|..+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999998888766654 5899999999999999999999998888877654
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.3e-15 Score=142.83 Aligned_cols=297 Identities=13% Similarity=0.063 Sum_probs=215.6
Q ss_pred cccCCCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee--CCCEEEEEeCCCcE
Q 007306 206 CFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATH 283 (608)
Q Consensus 206 ~~~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp--~g~~l~s~s~dg~i 283 (608)
|-..+.|...+.|...|..|+++|.|..|.+||+... ..... ++ .||...|....|-| +.+.+++++.||.+
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~---~~~l~--f~-SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSG---SPKLS--FE-SGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhcc---Ccccc--cc-cccccchhhhhccCCCCCcCceeccccCce
Confidence 4456667777789999999999999999999999752 22222 22 46999999999988 34568999999999
Q ss_pred EEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEe
Q 007306 284 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF 359 (608)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~ 359 (608)
++=.+... +.+........|.++|.-++.- ...|.+++ |+.+.-+|+..+.....+
T Consensus 212 r~s~i~~t--------------------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 212 RVSEILET--------------------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred eeeeeccc--------------------cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 97544322 2222111222588999988887 55788888 999999999876554333
Q ss_pred c---CCCC---CeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc------eEEEeeC------ccccEEEEEEeCCCCEE
Q 007306 360 A---NPPP---IATYFILLPQD--LFAFGFDDSSILVHCPCTKK------TKAKLKG------HQNRITCLAYSLSLNVL 419 (608)
Q Consensus 360 ~---~~~~---~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~------~~~~~~~------~~~~v~~~~~~~~~~~l 419 (608)
. .+.. ....++..|.. .+++|+.|..+++||.+.-. .+..+.. ....|++++|+.++.-+
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 2 2233 45788899988 89999999999999976421 1222222 23568999999888777
Q ss_pred EEEcCCCcEEEEECCCCce-------ecccceeeeeccCCCCccceEEEEE-cCCCCEEEEEeC-CcEEEEECCCCceee
Q 007306 420 VSSGADAQLCVWDAVGWKK-------LCSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHE-GQIDVYEAPTLNHTS 490 (608)
Q Consensus 420 ~s~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~d-~~i~iwd~~~~~~~~ 490 (608)
.++..|-.|+++.-..+.. .....++..+.||... ..|..+-| .|...++++|+| |.|.||+-.+++.++
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 7788899999995443221 0012333346777632 23666665 688899999755 899999999999988
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
-+.+. ..-|.|+.=+|--..||+++-|..|+||...+.+
T Consensus 431 ~MegD--r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 431 FMEGD--RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred Hhhcc--cceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 88765 3488999999999999999999999999985544
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-13 Score=126.40 Aligned_cols=282 Identities=17% Similarity=0.186 Sum_probs=187.0
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CC
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GS 335 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~ 335 (608)
...+..++|++.-..+|++..|-.|++|+-..... ..++. .....|.|++|. +.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p-------------------t~Lks----~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP-------------------TKLKS----VSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC-------------------ceecc----hhhcceeEEEeccCCcc
Confidence 45677889999767789999999999887554221 11111 245789999999 67
Q ss_pred EEEEEeCCcEEEEEcCC----Ccee--------eEe--cCCCCCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEE
Q 007306 336 HLFSASGGKISIFSLET----FQTL--------ATF--ANPPPIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAK 399 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~----~~~~--------~~~--~~~~~~v~~~~~~~~~-~l~~~~~-d~~i~vwd~~~~~~~~~ 399 (608)
.|+.|+.+-|.+|.... ++.+ +.+ .+| ..|+++.|.+|| .+++++. |..|.|||+.++..+..
T Consensus 155 elavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL 233 (445)
T KOG2139|consen 155 ELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL 233 (445)
T ss_pred eeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc
Confidence 88888888899998743 1211 112 233 689999999999 8887774 56899999999877655
Q ss_pred eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC-CceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcE
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 478 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i 478 (608)
.....+.++-+.|+|||.+|++++-|+..++|+... .... + ...+. +.|...+|+|+|++|+.+..+.-
T Consensus 234 ~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e-----r-w~lgs----grvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 234 IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE-----R-WILGS----GRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec-----c-eeccC----CceeeeeecCCCCEEEEEEcCCc
Confidence 434456788999999999999999999999996543 2111 1 11121 57999999999999988666666
Q ss_pred EEEECCCC-c--------------eeeee-----cCCC--CCCCeEEEEEecCCCEEEEEEcC--------CeEEEEeCC
Q 007306 479 DVYEAPTL-N--------------HTSQL-----VPDK--MDLPITYATYSCDGKCIYVSCKS--------GHVKVFDTS 528 (608)
Q Consensus 479 ~iwd~~~~-~--------------~~~~~-----~~~~--~~~~v~~~~~s~~~~~l~sg~~d--------g~i~iwd~~ 528 (608)
++|.+.-. + ++..+ ..+. -.+.+.+++|.|.|.+|++.-.. +.|.+||..
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 66654311 1 00000 0000 14678899999999999987654 346677776
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecC--CCCEEEEEeCCCcEEEEeCC
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~--d~~~las~s~Dg~v~iW~~~ 581 (608)
..-....... |- ...-+...++|+|. ++.+|..+=..|.+.-|.+.
T Consensus 384 ~sp~vels~c------g~-i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 384 KSPPVELSYC------GM-IGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccCceEEEec------cc-ccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 5443332211 11 11111334666663 45666666677777777654
No 213
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.6e-14 Score=148.10 Aligned_cols=206 Identities=17% Similarity=0.106 Sum_probs=142.9
Q ss_pred CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCce--EEEeeCccccEEEEEEeCCC
Q 007306 343 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSL 416 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~ 416 (608)
..|.+||..... .+.+..+...+.+..|+||| .|+..+.+ ..|++||+.+++. +..+.+| ...++|+|||
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCC
Confidence 589999986444 55667778889999999999 88776643 3699999988754 3333333 3468999999
Q ss_pred CEEEEEc-CCCcEEEE--ECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCC-Cceee
Q 007306 417 NVLVSSG-ADAQLCVW--DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-LNHTS 490 (608)
Q Consensus 417 ~~l~s~~-~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~-~~~~~ 490 (608)
+.|+.++ .+|.+.+| |+.++. ...+ ..+. ..+.+..|+|||+.|+. + .++...||++.. +....
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~------~~~l-t~~~---~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGT------PSQL-TSGA---GNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCC------eEee-ccCC---CCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 9888764 67766555 655532 2212 2233 45778999999998886 4 467777777643 22222
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.+ . +.. ....|+|||++|+..+.++ +.+||+.+++...... +. ... .++|+| |+.+|+.++
T Consensus 330 ~l-~--~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~-------~~---~~~--~~~~sP-dG~~i~~~s 390 (429)
T PRK01742 330 LV-G--GRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS-------TF---LDE--SPSISP-NGIMIIYSS 390 (429)
T ss_pred Ee-c--CCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------CC---CCC--CceECC-CCCEEEEEE
Confidence 23 2 222 4578999999999887765 5569999887543221 11 112 578999 899999999
Q ss_pred CCCcEEEEeCC
Q 007306 571 TNGRVHVIEPL 581 (608)
Q Consensus 571 ~Dg~v~iW~~~ 581 (608)
.+|.+.+|.+.
T Consensus 391 ~~g~~~~l~~~ 401 (429)
T PRK01742 391 TQGLGKVLQLV 401 (429)
T ss_pred cCCCceEEEEE
Confidence 99999988864
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=5.3e-14 Score=136.23 Aligned_cols=294 Identities=12% Similarity=0.113 Sum_probs=200.2
Q ss_pred CCCCcEEEEEEeeCCCEEE-EEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEE-EEe-
Q 007306 257 SFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF-ALR- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v-~~s- 333 (608)
.|...-+.|..+|||+|++ +|...-.|++||+..-...+.. +-...+..+ -.+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER------------------------hlDae~V~feiLsD 104 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER------------------------HLDAEVVDFEILSD 104 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee------------------------cccccceeEEEecc
Confidence 4778889999999999865 4555789999987655442220 112222222 222
Q ss_pred --CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 334 --GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 334 --~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
.+.++-..|.+|.+.... |.. ..++- +..-..++++.-. -|+.++....|+-+++..|+.+..|....+.++++
T Consensus 105 D~SK~v~L~~DR~IefHak~-G~h-y~~RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 105 DYSKSVFLQNDRTIEFHAKY-GRH-YRTRI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred chhhheEeecCceeeehhhc-Cee-eeeec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceee
Confidence 223333446666554322 211 11111 1112345555444 56666667789999999999999998888999999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCC--CccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCc
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 487 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~ 487 (608)
..++-..+|++|+.+|.|..||.++.+.............|.. ....|+++.|+.+|-.+++| ++|.+.|||+++.+
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 9999999999999999999999988543322222111111110 01359999999999999996 89999999999988
Q ss_pred eeeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCE
Q 007306 488 HTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 565 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 565 (608)
++..-. +...-+|..+.|.+. +..|++. ....++|||-.+|+....+.+. ..++ .+++-| ++.+
T Consensus 262 pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---------~~lN--D~C~~p-~sGm 327 (703)
T KOG2321|consen 262 PLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---------SDLN--DFCFVP-GSGM 327 (703)
T ss_pred ceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---------CCcC--ceeeec-CCce
Confidence 865543 234778999999765 3445444 4578999999999988887652 3344 889999 7889
Q ss_pred EEEEeCCCcEEEEeCCC--CccccccCC
Q 007306 566 IALGLTNGRVHVIEPLE--SEVEWGKLP 591 (608)
Q Consensus 566 las~s~Dg~v~iW~~~~--~~~~~~~~~ 591 (608)
+.++-.++.+..|=+.. +.|+|+...
T Consensus 328 ~f~Ane~~~m~~yyiP~LGPaPrWCSfL 355 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSLGPAPRWCSFL 355 (703)
T ss_pred EEEecCCCcceeEEccccCCCchhhhHH
Confidence 99999988877776654 456898753
No 215
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=4.4e-13 Score=132.93 Aligned_cols=317 Identities=14% Similarity=0.128 Sum_probs=192.5
Q ss_pred EEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceee
Q 007306 225 AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMES 304 (608)
Q Consensus 225 l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~ 304 (608)
+++-..++.|.+.|..+ .+... +++. ....-..+.|+|||+++++++.||.|.++|+.+.+.
T Consensus 9 ~V~~~~~~~v~viD~~t----~~~~~-~i~~--~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~----------- 70 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT----NKVVA-RIPT--GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV----------- 70 (369)
T ss_dssp EEEEGGGTEEEEEETTT-----SEEE-EEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-----------
T ss_pred EEEecCCCEEEEEECCC----CeEEE-EEcC--CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-----------
Confidence 45666789999999874 33332 1332 222334578999999999999999999888777664
Q ss_pred EEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCC-------CCCeEEEEEcC
Q 007306 305 QLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-------PPIATYFILLP 373 (608)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~ 373 (608)
+.... -.....+++++ |+++++++ ++.+.++|.++.+.++.+... ...+..+..+|
T Consensus 71 ----------v~~i~---~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~ 137 (369)
T PF02239_consen 71 ----------VATIK---VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP 137 (369)
T ss_dssp ----------EEEEE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S
T ss_pred ----------EEEEe---cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC
Confidence 21111 22345678888 88888887 799999999999999887632 34677787888
Q ss_pred CC-eEEEEe-CCCcEEEEeCCCCceEE-EeeCccccEEEEEEeCCCCEEEE-EcCCCcEEEEECCCCceecccceeeeec
Q 007306 374 QD-LFAFGF-DDSSILVHCPCTKKTKA-KLKGHQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVGWKKLCSKFLHSFQT 449 (608)
Q Consensus 374 ~~-~l~~~~-~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 449 (608)
.. .++..- +.+.|.+.|....+.+. .............|+|++++++. ...+..|-++|..+++.... +..
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~-----i~~ 212 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL-----IDT 212 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE-----EE-
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEE-----eec
Confidence 88 555544 45889888977654332 22223456778899999998665 45677899999988543221 222
Q ss_pred cCCCCccceEEE-------EE--cCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE---
Q 007306 450 GLVPETTIVNHI-------QF--HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS--- 516 (608)
Q Consensus 450 ~~~~~~~~v~~v-------~~--sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg--- 516 (608)
+..++..++..+ .| ...+...++ -..+.+.+||..+.+.++++... ..+ ..+..+|+++++.+.
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~--G~g-lFi~thP~s~~vwvd~~~ 289 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ--GGG-LFIKTHPDSRYVWVDTFL 289 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S--SSS---EE--TT-SEEEEE-TT
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC--CCc-ceeecCCCCccEEeeccC
Confidence 222211223222 12 112233323 24456678999999999999864 344 678889999999988
Q ss_pred -EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC--CCcEEEEeCCCCccccccC
Q 007306 517 -CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT--NGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 517 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~--Dg~v~iW~~~~~~~~~~~~ 590 (608)
...+.|.++|.++.+....+... ....+..+.|++ ||..+..+.. ++.|.|+|..+.+..-..+
T Consensus 290 ~~~~~~v~viD~~tl~~~~~i~~~---------~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 290 NPDADTVQVIDKKTLKVVKTITPG---------PGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -SSHT-EEEEECCGTEEEE-HHHH---------HT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCceEEEEECcCcceeEEEecc---------CCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 44589999999999877776531 122255899999 6775544443 3379999999987644333
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=6e-14 Score=147.15 Aligned_cols=256 Identities=13% Similarity=0.092 Sum_probs=178.2
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCC-------CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEE
Q 007306 322 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVH 389 (608)
Q Consensus 322 ~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vw 389 (608)
.|...|..++.+ +.++++|+ ||+|++||... .+...++......+.++...+.+ .+|+++.||.|.+.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 488888888888 57999999 99999999853 22334454567789999999999 99999999999999
Q ss_pred eCCCCc-------eEEEeeCc-cccEE-EEEEeC-CCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccce
Q 007306 390 CPCTKK-------TKAKLKGH-QNRIT-CLAYSL-SLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 458 (608)
Q Consensus 390 d~~~~~-------~~~~~~~~-~~~v~-~~~~~~-~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 458 (608)
++.-.. +......+ .+.+. .-+|.. .+. .++.+...+.|..||+++...... ++ ....| +.|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~--lk-~~~~h----G~v 1198 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR--LK-NQLRH----GLV 1198 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh--hh-cCccc----cce
Confidence 987521 11111111 22333 333433 334 688888899999999988432211 12 12223 689
Q ss_pred EEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC---CEEEEEE--cCCeEEEEeCCCCce
Q 007306 459 NHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG---KCIYVSC--KSGHVKVFDTSTLEL 532 (608)
Q Consensus 459 ~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~sg~--~dg~i~iwd~~~~~~ 532 (608)
++++.+|.+.++++| ..|.+.+||++-+.++.....+ +..++..+..+|-. .+.++++ ..+.|.+|++.+|..
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 999999999999997 7899999999999998888765 46888888887643 4555444 468999999999977
Q ss_pred eEEEecee-------eccCC--CcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 533 RCQINLTA-------YAQPG--TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 533 ~~~~~~~~-------~~~~g--~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
...+.... ..++. ...+.+......+.. .+..+.+|+.|+.||.||...++..
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccc
Confidence 66665330 11111 001111122233333 4679999999999999999987764
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=1.3e-15 Score=143.67 Aligned_cols=281 Identities=11% Similarity=0.118 Sum_probs=213.8
Q ss_pred CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 260 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
-.-..+.++.+|++|+.|+..|.+-.+|+.+.....+ . .-...|.++.|- .+++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E------------i------------~v~Etv~Dv~~LHneq~~ 185 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE------------I------------NVMETVRDVTFLHNEQFF 185 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeee------------e------------ehhhhhhhhhhhcchHHH
Confidence 3456788999999999999999999999888765221 1 134567788888 5566
Q ss_pred EEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCC
Q 007306 338 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL 416 (608)
Q Consensus 338 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 416 (608)
|++....+.|||-. |..+..++.+ ..|..+.|.|.. +|++++..|.++.-|+.+|+.+..+....+.+..+.-+|-.
T Consensus 186 AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 186 AVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred HhhhhceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 66668999999965 7777777654 457789999999 99999999999999999999999888888889999999988
Q ss_pred CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCC
Q 007306 417 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD 495 (608)
Q Consensus 417 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~ 495 (608)
..+-+|...|+|.+|..... .++- -.-.|. ++|.++++.++|+|+++ |.|..++|||+++...+.++..
T Consensus 264 aVih~GhsnGtVSlWSP~sk-----ePLv-KiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t- 333 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSK-----EPLV-KILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT- 333 (545)
T ss_pred ceEEEcCCCceEEecCCCCc-----chHH-HHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec-
Confidence 88999999999999998873 3333 233455 79999999999999999 7999999999998887777754
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC-ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCc
Q 007306 496 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 496 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 574 (608)
..+...+++|..| +++.+....|.||.-... ..-.... |. .|... -.|..+.|.| -.+.|-.|-.-|.
T Consensus 334 --p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~p---Ym--~H~~~-~~V~~l~FcP-~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 334 --PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETP---YM--NHRCG-GPVEDLRFCP-YEDVLGIGHAGGI 402 (545)
T ss_pred --CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcc---hh--hhccC-cccccceecc-HHHeeeccccCCc
Confidence 3556678888665 334445567999964321 1111110 11 11111 1344899999 6788888888887
Q ss_pred EEEEeCCCCcccc
Q 007306 575 VHVIEPLESEVEW 587 (608)
Q Consensus 575 v~iW~~~~~~~~~ 587 (608)
-.|.=+..|++.+
T Consensus 403 tsilVPGsGePN~ 415 (545)
T KOG1272|consen 403 TSILVPGSGEPNY 415 (545)
T ss_pred eeEeccCCCCCCc
Confidence 7777788888754
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.1e-15 Score=144.11 Aligned_cols=269 Identities=10% Similarity=0.149 Sum_probs=201.6
Q ss_pred CceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 212 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 212 ~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
....+.++.+|.+++.|+.-|.+--+|+.++....++. -...|.++.|-.+.+++|++.. ..+.|||-..-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--------v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~Gt 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--------VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNGT 201 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee--------hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCCc
Confidence 33445799999999999999999999998532111111 2678999999999998877654 55665553322
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CC-EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
+. .|++ ....|..+.|- -. +|++++ .|.++.-|+.+|+.+..+....+.+..
T Consensus 202 El-------------------HClk------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~v 256 (545)
T KOG1272|consen 202 EL-------------------HCLK------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDV 256 (545)
T ss_pred EE-------------------eehh------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccch
Confidence 21 1221 33667788888 44 566666 799999999999999999988899999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
++-+|-+ .+-+|...|+|.+|.+...+++-.+-.|.++|.++++.++|+++++.+.|..++|||+++. ..+.+.
T Consensus 257 m~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~-----~ql~t~ 331 (545)
T KOG1272|consen 257 MKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF-----YQLHTY 331 (545)
T ss_pred hhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc-----ccccee
Confidence 9999999 9999999999999999999988888889999999999999999999999999999999983 333333
Q ss_pred eccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC-CCC--ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTL--NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 524 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~-~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i 524 (608)
... .+...+++|..| .|+.|....+.||.= -.+ ..-..+..+.-.++|..+.|.|-...|-.|...|.-.|
T Consensus 332 ~tp-----~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 332 RTP-----HPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred ecC-----CCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 332 346678888655 566677788999952 221 22222222222568999999999888888776664444
Q ss_pred E
Q 007306 525 F 525 (608)
Q Consensus 525 w 525 (608)
.
T Consensus 406 l 406 (545)
T KOG1272|consen 406 L 406 (545)
T ss_pred e
Confidence 3
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=4.1e-14 Score=145.17 Aligned_cols=210 Identities=16% Similarity=0.118 Sum_probs=144.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEEcCCCce--eeEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEE--EE
Q 007306 322 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSIL--VH 389 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d---~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~--vw 389 (608)
.|...+.+.+|+ |+.|+.++ + ..|.+||+.+++. +..+.++ ...++|+||| .|+.+. .+|.+. +|
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 277 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVM 277 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEE
Confidence 477789999999 88888876 3 3699999988754 3333333 3468999999 777654 677654 55
Q ss_pred eCCCCceEEEeeCccccEEEEEEeCCCCEEEEEc-CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 390 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 390 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
|+.++.. ..+..+...+.+..|+|||+.|+.++ .++...+|++..... ... .. ++. . ....|+|||+
T Consensus 278 d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~-~l-~~~---~--~~~~~SpDG~ 345 (429)
T PRK01742 278 GANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GAS-LV-GGR---G--YSAQISADGK 345 (429)
T ss_pred ECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeE-Ee-cCC---C--CCccCCCCCC
Confidence 7766654 44555666788999999999877554 578888887754211 111 11 222 2 3578999999
Q ss_pred EEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC--CCCceeEEEeceeeccCCC
Q 007306 469 HLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT--STLELRCQINLTAYAQPGT 546 (608)
Q Consensus 469 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~--~~~~~~~~~~~~~~~~~g~ 546 (608)
+++......+.+||+.+++... +... ....++.|+|||++|+.++.++.+.+|++ .+|+....+. +|
T Consensus 346 ~ia~~~~~~i~~~Dl~~g~~~~-lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-------~~ 414 (429)
T PRK01742 346 TLVMINGDNVVKQDLTSGSTEV-LSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-------GS 414 (429)
T ss_pred EEEEEcCCCEEEEECCCCCeEE-ecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-------CC
Confidence 9988544567779998887543 2221 12356789999999999999998888876 3566666664 22
Q ss_pred cccccccEEEEEec
Q 007306 547 ISLELYPLVIAAHP 560 (608)
Q Consensus 547 ~~~~v~~~~v~~sp 560 (608)
.+.+. ..+|+|
T Consensus 415 -~g~~~--~p~wsp 425 (429)
T PRK01742 415 -DGQVK--FPAWSP 425 (429)
T ss_pred -CCCCC--CcccCC
Confidence 33344 788998
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=1.1e-12 Score=127.29 Aligned_cols=317 Identities=11% Similarity=0.122 Sum_probs=203.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
...+|++|+++|.+. +..++|++.... ....+. ....+.++.|||.|.+|.+--. -.+|.-.+..
T Consensus 39 v~~~S~~G~lfA~~~-~~~v~i~~~~~~---~~~lt~------~~~~~~~L~fSP~g~yL~T~e~---~~i~~~~~~~-- 103 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYSD-NQVVKVFEIATL---KVVLCV------ELKKTYDLLFSPKGNYLLTWEP---WAIYGPKNAS-- 103 (566)
T ss_pred eEEEcCCCcEEEEEc-CCeEEEEEccCC---cEEEEe------ccceeeeeeecccccccccccc---cccccCCCCC--
Confidence 347899999888765 467888888642 122222 2338999999999999876321 1111111110
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEc
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 372 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 372 (608)
.....+|+.+++.... .+....... ++..|+ +..++.-- .+.+.+|++...+.+.. +-|...++.+.++
T Consensus 104 ------~pn~~v~~vet~~~~s-~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lS 174 (566)
T KOG2315|consen 104 ------NPNVLVYNVETGVQRS-QIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLS 174 (566)
T ss_pred ------CCceeeeeeccceehh-heehhhhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEec
Confidence 1223466666633221 111112222 688898 66665555 89999999986333221 2357788899999
Q ss_pred CCC---eEEE-----EeCCCcEEEEeCCCCceEEEee--C-ccccEEEEEEeCCCCE-EEEEc--CC---------CcEE
Q 007306 373 PQD---LFAF-----GFDDSSILVHCPCTKKTKAKLK--G-HQNRITCLAYSLSLNV-LVSSG--AD---------AQLC 429 (608)
Q Consensus 373 ~~~---~l~~-----~~~d~~i~vwd~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~-l~s~~--~d---------~~i~ 429 (608)
|.+ .+++ ++.-+.|++|.......-..+. . ....=..+.|++-|.- |+.++ -| .+++
T Consensus 175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 985 4443 3445589999876322111110 0 1222335678876653 33222 23 3577
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEE
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 506 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 506 (608)
+.++...+ ..+. + ... ++|.++.|+|+|+.+++ | .-..+.|||+ .+.++..+. .++-.++-|
T Consensus 255 ll~t~g~s----~~V~-L--~k~---GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~----egpRN~~~f 319 (566)
T KOG2315|consen 255 LLATQGES----VSVP-L--LKE---GPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP----EGPRNTAFF 319 (566)
T ss_pred EEEecCce----EEEe-c--CCC---CCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC----CCCccceEE
Confidence 77777311 1122 1 122 79999999999998887 5 5678999999 577777773 677788999
Q ss_pred ecCCCEEEEEEcC---CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC------CCcEEE
Q 007306 507 SCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHV 577 (608)
Q Consensus 507 s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~------Dg~v~i 577 (608)
+|.|++|+.++-+ |.|-|||+.+.+++..+... +.+-+.|+| ||.+|+|++. |..++|
T Consensus 320 np~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~------------~tt~~eW~P-dGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 320 NPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA------------NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred CCCCCEEEEeecCCCCCceEEEeccchhhccccccC------------CceEEEEcC-CCcEEEEEeccccEEecCCeEE
Confidence 9999999987765 89999999998888877532 244689999 8999999884 688999
Q ss_pred EeCCCC
Q 007306 578 IEPLES 583 (608)
Q Consensus 578 W~~~~~ 583 (608)
|+....
T Consensus 387 whytG~ 392 (566)
T KOG2315|consen 387 WHYTGS 392 (566)
T ss_pred EEecCc
Confidence 998654
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.9e-12 Score=117.00 Aligned_cols=231 Identities=14% Similarity=0.233 Sum_probs=154.3
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe-CC------CcEEEEec
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QT------ATHKLWKW 288 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s-~d------g~i~iw~~ 288 (608)
++|..|...++.|..+| .+|++.+-.+....-. . +.+.+.-+..---.++||-.+ .+ +.+.|||-
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~---~----~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ---F----IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhhc---c----ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 36888888888887766 8899887311111111 1 122221111112234555433 22 35666652
Q ss_pred CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcC-CCceeeEecCC--CCC
Q 007306 289 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLE-TFQTLATFANP--PPI 365 (608)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~d~~i~vwd~~-~~~~~~~~~~~--~~~ 365 (608)
....++..+ ....+|.+|.+....+++.-.+.|.||... +.+.++.+... +.+
T Consensus 83 ---------------------~k~~~i~el---~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 83 ---------------------LKERCIIEL---SFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred ---------------------ccCcEEEEE---EeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCc
Confidence 222222221 266889999999888898999999999987 45666666532 233
Q ss_pred eEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCce--EEEeeCccccEEEEEEeCCCCEEEEEcCCCc-EEEEECCCCceec
Q 007306 366 ATYFILLPQD-LFAF-GFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDAVGWKKLC 440 (608)
Q Consensus 366 v~~~~~~~~~-~l~~-~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~ 440 (608)
..+++-+.+. .||. |-.-|.|.|-|+...+. ...+.+|.+.|.|++.+.+|..+|++|..|+ |++||..+++.
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-- 216 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-- 216 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE--
Confidence 3333322233 4443 44668999999987655 4677889999999999999999999999998 78999999653
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCC
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT 485 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~ 485 (608)
++.+..|... ..|.+++|||++.+|+++ ..|+++||.++.
T Consensus 217 ---l~E~RRG~d~--A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 217 ---LQELRRGVDR--ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred ---eeeeecCCch--heEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 3334455443 689999999999999995 668999999865
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.5e-12 Score=129.19 Aligned_cols=286 Identities=16% Similarity=0.151 Sum_probs=171.3
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC-CCcEEEEecCCCcce
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQS 294 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~ 294 (608)
..++|||+++++++.||.|.++|+.+. .....+. -.....++++|+||++++++.. ++.+.++|.++.+..
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~---~~v~~i~-----~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v 113 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATG---KVVATIK-----VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV 113 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSS---SEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcc---cEEEEEe-----cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence 469999999999999999999999852 2333332 2556789999999999998875 799999988777652
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C-CcEEEEEcCCCceee-EecCCCCCeEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFSLETFQTLA-TFANPPPIATYF 369 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d-~~i~vwd~~~~~~~~-~~~~~~~~v~~~ 369 (608)
.. ..++.... ......+.++..+ ...++..- | +.|.+-|....+.+. ............
T Consensus 114 ~~------------I~~~~~~~----~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~ 177 (369)
T PF02239_consen 114 KT------------IPTGGMPV----DGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDG 177 (369)
T ss_dssp EE------------EE--EE-T----TTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEE
T ss_pred ee------------cccccccc----cccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccccccccc
Confidence 22 11111100 0133556677666 44455444 4 788888876654332 222334556788
Q ss_pred EEcCCC-eE-EEEeCCCcEEEEeCCCCceEEEeeC----ccccEEEEEEeCC----------CCEEEEEcCCCcEEEEEC
Q 007306 370 ILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS----------LNVLVSSGADAQLCVWDA 433 (608)
Q Consensus 370 ~~~~~~-~l-~~~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~----------~~~l~s~~~d~~i~vwd~ 433 (608)
.|+|++ ++ ++...++.|-++|..+++.+..+.. |..++..+ .+|. +...++.-....+.+||.
T Consensus 178 ~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~ 256 (369)
T PF02239_consen 178 GFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDD 256 (369)
T ss_dssp EE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STT
T ss_pred ccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchh
Confidence 999999 55 4456677999999999887765532 44444433 2332 222222222334556776
Q ss_pred CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
.+++ .++++... . ++ .-+..+|+++++.+. ..++|.++|.++.+.+.++.... ...+..+.|++
T Consensus 257 ~~wk-----vv~~I~~~-G---~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~ 325 (369)
T PF02239_consen 257 YAWK-----VVKTIPTQ-G---GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNP 325 (369)
T ss_dssp TBTS-----EEEEEE-S-S---SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-T
T ss_pred hcCe-----EEEEEECC-C---Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECC
Confidence 6643 34433322 1 23 678889999999985 23789999999998888876422 34599999999
Q ss_pred CCCEEEEEEcC--CeEEEEeCCCCceeEEEe
Q 007306 509 DGKCIYVSCKS--GHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 509 ~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~ 537 (608)
||+.+..+..+ +.|.|||..+.++...+.
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99987765554 479999999999998886
No 223
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.59 E-value=2.9e-12 Score=122.86 Aligned_cols=325 Identities=10% Similarity=0.039 Sum_probs=213.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.+||.|.+|++....| |.+|.-.. ...+.++. ...|..+.|||.++||.+-+..+.+ +- ...
T Consensus 37 ~~~~SP~G~~l~~~~~~~-V~~~~g~~---~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~---~p---e~e 100 (561)
T COG5354 37 YVSESPLGTYLFSEHAAG-VECWGGPS---KAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPII---EP---EIE 100 (561)
T ss_pred heeecCcchheehhhccc-eEEccccc---hhheeeee------cCCceecccCcccceeeeeccCCcc---Ch---hhc
Confidence 357999999999887654 88898764 34555542 4579999999999999998776543 10 000
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeE-EEEEe--CCEEEEEeCCcEEEEEcCCCce-eeEecC-CCCCeEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR--GSHLFSASGGKISIFSLETFQT-LATFAN-PPPIATYF 369 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s--~~~l~s~~d~~i~vwd~~~~~~-~~~~~~-~~~~v~~~ 369 (608)
.........+.+||..+|.++............+ -+.|+ +++++-.....+.|+++ ++.. ...+.. ....+...
T Consensus 101 ~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dF 179 (561)
T COG5354 101 ISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDF 179 (561)
T ss_pred cCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeE
Confidence 0011111135688888888776443211222244 56777 56666556778999997 3322 111111 13567888
Q ss_pred EEcCCC---eEEE-----EeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEc-----------CCCcEEE
Q 007306 370 ILLPQD---LFAF-----GFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-----------ADAQLCV 430 (608)
Q Consensus 370 ~~~~~~---~l~~-----~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----------~d~~i~v 430 (608)
.|+|.+ .|+. .+..+.+++|.+..+..+.+-.-....=..+.|.+.|++++.-- ....+.+
T Consensus 180 sisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 180 SISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred EecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 899975 4443 45677999999987776654433333345678999998866421 1245778
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
+++.. +.+. ...+.. ++|.+.+|.|.++.+++ | .+..+.++|++.. ...-+. ...-..+.||
T Consensus 260 ~~~~e------~~i~-V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fs 324 (561)
T COG5354 260 LRITE------RSIP-VEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFS 324 (561)
T ss_pred Eeecc------cccc-eecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Cccccccccc
Confidence 88764 2222 111223 68999999999988887 3 6788999999644 433332 3445567899
Q ss_pred cCCCEEEEEEcC---CeEEEEeCCCCceeE-EEeceeeccCCCcccccccEEEEEecCCCCEEEEEe------CCCcEEE
Q 007306 508 CDGKCIYVSCKS---GHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL------TNGRVHV 577 (608)
Q Consensus 508 ~~~~~l~sg~~d---g~i~iwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s------~Dg~v~i 577 (608)
|.+++++.++-| |.|-+||........ .+.. ....-+.|+| |+.++.+.. .|..+.|
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~------------~n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l 391 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG------------LNTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKL 391 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeec------------CCceEeeccC-CceEEEecCCCcccccCcceEE
Confidence 999999987766 789999998765444 4431 1133678999 788887765 4788999
Q ss_pred EeCCCCc
Q 007306 578 IEPLESE 584 (608)
Q Consensus 578 W~~~~~~ 584 (608)
|++....
T Consensus 392 ~~v~g~~ 398 (561)
T COG5354 392 WDVYGAK 398 (561)
T ss_pred EEecCch
Confidence 9997754
No 224
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1e-12 Score=135.33 Aligned_cols=214 Identities=10% Similarity=0.028 Sum_probs=146.2
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
.|.++|.. |...+.+..+...+.+..|+||| .|+..+. +..|++||+.+++.. .+..+.+.+.+..|+|||+.|
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 68888875 45556666778889999999999 7776653 458999999988654 344456677888999999987
Q ss_pred E-EEcCCCc--EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe--C--CcEEEEECCCCceeeee
Q 007306 420 V-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--E--GQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 420 ~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--d--~~i~iwd~~~~~~~~~~ 492 (608)
+ +.+.++. |++||+.++.. ..+. .+. .......|+|||+.|+... + ..|++||+.++.. +.+
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~------~~Lt-~~~---~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~l 329 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT------TRLT-DSP---AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRI 329 (435)
T ss_pred EEEEecCCCceEEEEECCCCce------EEcc-CCC---CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEe
Confidence 5 4455554 77778877432 2121 222 3456789999999988742 2 3688999876554 344
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
.. +...+....|+|||++|+..+.+ ..|.+||+.++.. ..+.. + ..+. ..+|+| |+++|+..
T Consensus 330 t~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~------~---~~~~--~p~~sp-DG~~i~~~ 394 (435)
T PRK05137 330 SF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS------G---FLVE--GPTWAP-NGRVIMFF 394 (435)
T ss_pred ec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC------C---CCCC--CCeECC-CCCEEEEE
Confidence 32 24456678899999999877654 3688899866543 33321 1 1223 789999 78887776
Q ss_pred eCC------CcEEEEeCCCCcc
Q 007306 570 LTN------GRVHVIEPLESEV 585 (608)
Q Consensus 570 s~D------g~v~iW~~~~~~~ 585 (608)
+.+ ..+.+.++..+..
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EccCCCCCcceEEEEECCCCce
Confidence 543 2577778766544
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.2e-12 Score=134.06 Aligned_cols=212 Identities=12% Similarity=0.102 Sum_probs=141.9
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
.|.+||...+.. +.+..+...+.+.+|+||| .|+..+ .+..|++||+.+++.... ......+..+.|+|||+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 688888875443 3444566788999999999 776544 234799999988864332 2223335568999999988
Q ss_pred EEE-cCCC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee-CC--cEEEEECCCCceeeee
Q 007306 420 VSS-GADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQL 492 (608)
Q Consensus 420 ~s~-~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~ 492 (608)
+.. +.+| .|++||+.+++. .+ +..++ ..+....|+|||+.|+. +. ++ .|+++|+.++.. ..+
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~-----~~-lt~~~----~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~l 326 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQI-----RQ-VTDGR----SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRI 326 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCE-----EE-ccCCC----CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEe
Confidence 765 4444 588999987432 11 22222 35678999999998887 42 33 466667766654 333
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
.. .........|+|||++|+..+.+ ..|++||+.+++.. .+.. + .... ...|+| |+.+|+.+
T Consensus 327 t~--~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~------~---~~~~--~p~~Sp-DG~~i~~~ 391 (429)
T PRK03629 327 TW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD------T---FLDE--TPSIAP-NGTMVIYS 391 (429)
T ss_pred ec--CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC------C---CCCC--CceECC-CCCEEEEE
Confidence 32 23445678999999999876654 46889999988743 3321 1 1112 578999 89999999
Q ss_pred eCCCc---EEEEeCCCC
Q 007306 570 LTNGR---VHVIEPLES 583 (608)
Q Consensus 570 s~Dg~---v~iW~~~~~ 583 (608)
+.++. +.+|++..+
T Consensus 392 s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 392 SSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EcCCCceEEEEEECCCC
Confidence 98864 677777543
No 226
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=5.5e-11 Score=118.34 Aligned_cols=285 Identities=15% Similarity=0.136 Sum_probs=176.7
Q ss_pred EEEeecC----CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC----CCcEEEEecCCCcceee
Q 007306 225 AVCAKSL----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----TATHKLWKWQSNKQSLE 296 (608)
Q Consensus 225 l~~~~~d----~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~----dg~i~iw~~~~~~~~~~ 296 (608)
++.|+.. +.|.+|+++.. .+.+....... -......++++|++++|++... +|.|..|++...
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~--~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~----- 72 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEE--TGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD----- 72 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETT--TTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-----
T ss_pred EEEEcCCCCCCCcEEEEEEcCC--CCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-----
Confidence 3445544 78999998432 34443322111 2456677899999999999887 468887766543
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC-CceeeE---ec--------
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT---FA-------- 360 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~-~~~~~~---~~-------- 360 (608)
++.+...............++++ +++|+++. +|.|.++++.. |..... +.
T Consensus 73 --------------~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~ 138 (345)
T PF10282_consen 73 --------------TGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP 138 (345)
T ss_dssp --------------TTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESST
T ss_pred --------------cceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcc
Confidence 12211100000122344567887 88888887 79999999976 443322 21
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCc--eE--EEee-CccccEEEEEEeCCCCEEEEE-cCCCcEEE
Q 007306 361 --NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKK--TK--AKLK-GHQNRITCLAYSLSLNVLVSS-GADAQLCV 430 (608)
Q Consensus 361 --~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vwd~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~~l~s~-~~d~~i~v 430 (608)
.......++.++|++ ++++.. ....|.+|++.... .. ..+. ......+.++|+|+++++.+. -.+++|.+
T Consensus 139 ~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v 218 (345)
T PF10282_consen 139 DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSV 218 (345)
T ss_dssp TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEE
Confidence 123456789999999 555543 34589999987654 32 2222 244668899999999987555 45788999
Q ss_pred EECC--CCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECC--CCc--eeeeecCCCCCCCeE
Q 007306 431 WDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLN--HTSQLVPDKMDLPIT 502 (608)
Q Consensus 431 wd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~--~~~--~~~~~~~~~~~~~v~ 502 (608)
+++. ++.......+.+...+... ......|+++|||++|+++ ..+.|.+|++. +++ .+..+... .....
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr 295 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTG-ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPR 295 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCS-SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEE
T ss_pred EeecccCCceeEEEEeeeccccccc-cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCcc
Confidence 9988 4332222223323222221 0257889999999999996 56789999983 343 33344332 45588
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEeC--CCCceeEE
Q 007306 503 YATYSCDGKCIYVSCK-SGHVKVFDT--STLELRCQ 535 (608)
Q Consensus 503 ~~~~s~~~~~l~sg~~-dg~i~iwd~--~~~~~~~~ 535 (608)
.++++|+|++|+++.. ++.|.+|++ .+|.+...
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 9999999999998875 578999976 56765544
No 227
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.4e-11 Score=110.88 Aligned_cols=280 Identities=11% Similarity=0.059 Sum_probs=181.5
Q ss_pred CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC---CcEEEEecCCCcceeeecccceeeEEe
Q 007306 231 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLY 307 (608)
Q Consensus 231 d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~ 307 (608)
+.-|.+|++.+. .+++....+.. +.+.++-++|+|++++|.++..+ |.|..|.+
T Consensus 15 s~gI~v~~ld~~--~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i------------------- 71 (346)
T COG2706 15 SQGIYVFNLDTK--TGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI------------------- 71 (346)
T ss_pred CCceEEEEEeCc--ccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence 466999999843 33333322222 68889999999999999998775 56665543
Q ss_pred eCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC-CceeeE--ecCCCCC----------eEEEE
Q 007306 308 QPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQTLAT--FANPPPI----------ATYFI 370 (608)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~-~~~~~~--~~~~~~~----------v~~~~ 370 (608)
|..+|.+...-.......+-..++++ +++++++. .|.|.++-++. |..... ...|.+. +.+..
T Consensus 72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 44434422110000122233778888 78999998 69999999965 433222 1233333 77889
Q ss_pred EcCCC-eEEEEeC-CCcEEEEeCCCCceEEEee---CccccEEEEEEeCCCCEEEEEc-CCCcEEEEECCC--Cceeccc
Q 007306 371 LLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK---GHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVG--WKKLCSK 442 (608)
Q Consensus 371 ~~~~~-~l~~~~~-d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~--~~~~~~~ 442 (608)
+.|++ ++++..- --.|.+|++..|+....-. ......+.|.|+|++++....+ -+++|.+|..+. ++....+
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 99999 6666653 2379999999876542211 2455678899999999876655 489999999887 3333333
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCC--CceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPT--LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.+.+++.+... ......|.++|||++|.++ ....|.+|.+.. +++...-....+........|+++|++|+++..
T Consensus 232 ~i~tlP~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 232 TIDTLPEDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeccCccccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 33433433321 1466789999999999997 345788887753 332211111123555788999999999999887
Q ss_pred C-CeEEEEeCC--CCceeE
Q 007306 519 S-GHVKVFDTS--TLELRC 534 (608)
Q Consensus 519 d-g~i~iwd~~--~~~~~~ 534 (608)
+ ..|.+|..+ +|++..
T Consensus 311 ~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 311 KSDNITVFERDKETGRLTL 329 (346)
T ss_pred CCCcEEEEEEcCCCceEEe
Confidence 6 568888764 555433
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=5.2e-13 Score=123.83 Aligned_cols=252 Identities=13% Similarity=0.073 Sum_probs=180.7
Q ss_pred CCCcEEEEEEeeCCC--EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCC
Q 007306 258 FGGRVVRLIYSHSGD--FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~--~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~ 335 (608)
-...|..++|.-+++ .+...+.|..+.......... ...+|+..+-. ...++|..++..+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~---------~s~~~~~~~~~--------l~~~~I~gl~~~dg 116 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEI---------SSSLDDAKTVS--------LGTKSIKGLKLADG 116 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcc---------ccccccccccc--------cccccccchhhcCC
Confidence 356788888876654 455555666666665544433 12234432211 24567777777755
Q ss_pred EEEEEe-CCcEEEEEcCCCc----eeeEecCCCCCeEEEEEcCCC--eEEEEeCC--CcEEEEeCCCCceEEEeeCc---
Q 007306 336 HLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD--LFAFGFDD--SSILVHCPCTKKTKAKLKGH--- 403 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d--~~i~vwd~~~~~~~~~~~~~--- 403 (608)
.|++|- +|.+.+|..+.+. .+..+..+ .++..+.-++.. .+++|+.. ..+.+||+.+.+.+..-+.-
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 666666 9999999998543 22233322 345555556666 66779988 89999999987554332211
Q ss_pred ------cccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-e
Q 007306 404 ------QNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 474 (608)
Q Consensus 404 ------~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~ 474 (608)
.-.++++.|-+. ...|++++.-+.+++||.+.++ +++..+.-.. .+++++...|+|.+++++ .
T Consensus 196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E----~~is~~~l~p~gn~Iy~gn~ 267 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE----NPISSTGLTPSGNFIYTGNT 267 (412)
T ss_pred cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc----CcceeeeecCCCcEEEEecc
Confidence 124567888886 7889999999999999999754 5555333333 579999999999999997 7
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
-+.+..||++.++....... +-.+.|.++..+|.++++++++-|..|||+|+.+.+++...
T Consensus 268 ~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred cchhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 89999999999998877433 34899999999999999999999999999999997766554
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.9e-13 Score=135.64 Aligned_cols=212 Identities=17% Similarity=0.104 Sum_probs=143.1
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
+|.+||.. +...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++... +....+...++.|+|||+.+
T Consensus 185 ~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 68899986 44455566677788899999999 77776643 369999998876543 33334445678999999977
Q ss_pred E-EEcCCC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe--CC--cEEEEECCCCceeeee
Q 007306 420 V-SSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EG--QIDVYEAPTLNHTSQL 492 (608)
Q Consensus 420 ~-s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--d~--~i~iwd~~~~~~~~~~ 492 (608)
+ +.+.+| .|++||+.+++.. + +. .+. ......+|+|||+.|+.+. ++ .|+++|+.+++.. .+
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-----~-lt-~~~---~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~l 331 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-----R-LT-NHF---GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RL 331 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-----E-Cc-cCC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee
Confidence 5 445555 5999999875421 1 11 222 2345789999999988743 33 4777788766543 33
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
... .......+|||||++|+..+.++ .|++||+.+++.. .+.. + . ... ..+|+| |+++++..
T Consensus 332 t~~--g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~------~--~-~~~--~p~~sp-dG~~i~~~ 396 (433)
T PRK04922 332 TFQ--GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP------G--S-LDE--SPSFAP-NGSMVLYA 396 (433)
T ss_pred ecC--CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC------C--C-CCC--CceECC-CCCEEEEE
Confidence 222 33445789999999998765443 6999999888754 3321 1 1 122 578999 78887777
Q ss_pred eCC---CcEEEEeCCCC
Q 007306 570 LTN---GRVHVIEPLES 583 (608)
Q Consensus 570 s~D---g~v~iW~~~~~ 583 (608)
+.+ +.|.++++..+
T Consensus 397 s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 397 TREGGRGVLAAVSTDGR 413 (433)
T ss_pred EecCCceEEEEEECCCC
Confidence 653 35777777543
No 230
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.5e-12 Score=123.32 Aligned_cols=334 Identities=12% Similarity=0.068 Sum_probs=215.4
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.|||-|.||+|-...| |.+|--.+ -..+.++. | ..|.-+.|||+.+||+|-+..-.+.=|+-..+..
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-----H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~-- 283 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-----H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ-- 283 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-----C-CCceeeecCCccceEEEecCCccccCcccCCCce--
Confidence 47999999999998866 77887543 34555542 4 4688999999999999988755444443222221
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeE-EEEEe--CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEc
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILL 372 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 372 (608)
+.+||..+|.+.+....-.....++ -+.|| ++++|.-....|.||+..+...+..-.-.-.+|....|+
T Consensus 284 --------l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 284 --------LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred --------EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccC
Confidence 3567777776554432111222333 34788 777777778889999987644433222334677889999
Q ss_pred CCC-eEEEEeCC-----CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC----------CCcEEEEECCCC
Q 007306 373 PQD-LFAFGFDD-----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------DAQLCVWDAVGW 436 (608)
Q Consensus 373 ~~~-~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~ 436 (608)
|.+ .||--... ..+.+..+.+++.+++-.-++-.=..+.|-.+|.+|+.--. -..+.++.++..
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireK 435 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREK 435 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeecc
Confidence 999 77644322 25777888888777766555444445677788888875321 123445555441
Q ss_pred ceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--Ee--CCcEEEEECCC-C---ceeeeecCCCCCCCeEEEEEec
Q 007306 437 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IH--EGQIDVYEAPT-L---NHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~--d~~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
..++..+. -. ..|...+|-|.|..+++ +. ..++.+|.+++ . +++..+. ......+.|+|
T Consensus 436 ----dIpve~ve-lk----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsP 502 (698)
T KOG2314|consen 436 ----DIPVEVVE-LK----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSP 502 (698)
T ss_pred ----CCCceeee-cc----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcC
Confidence 12222111 11 57889999999988887 33 35789998873 2 2333332 56678899999
Q ss_pred CCCEEEEE---EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC------CCcEEEEe
Q 007306 509 DGKCIYVS---CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------NGRVHVIE 579 (608)
Q Consensus 509 ~~~~l~sg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~------Dg~v~iW~ 579 (608)
.|++++.+ |..|.+.++|+.......+ ++..+ ...+.+.|.| .|+|++|++. |.--+||+
T Consensus 503 kG~fvvva~l~s~~g~l~F~D~~~a~~k~~---------~~~eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~t 571 (698)
T KOG2314|consen 503 KGRFVVVAALVSRRGDLEFYDTDYADLKDT---------ASPEH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFT 571 (698)
T ss_pred CCcEEEEEEecccccceEEEecchhhhhhc---------cCccc-cccccceECC-CCCEEEEeeehhhhccccceEEEE
Confidence 99998875 4568999999985332222 11121 1244789999 6999999985 45567888
Q ss_pred CCCCc-----------cccccCCCC
Q 007306 580 PLESE-----------VEWGKLPFT 593 (608)
Q Consensus 580 ~~~~~-----------~~~~~~~~~ 593 (608)
..... -.|...||+
T Consensus 572 fqGrll~~~~i~~f~qF~WRPRPps 596 (698)
T KOG2314|consen 572 FQGRLLKEDIIDRFKQFLWRPRPPS 596 (698)
T ss_pred eecHHHHHHHHHHHHhhccCCCCCc
Confidence 86532 268777775
No 231
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=2.7e-13 Score=122.47 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=157.5
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCC
Q 007306 361 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 436 (608)
Q Consensus 361 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 436 (608)
....+|+|.+|++|+ .++++.....|.||...... ...+++.|...|+.+.|+|..+.|++++.|..-++|....+
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999 99999999999999877654 56788889999999999999999999999999999998432
Q ss_pred ceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEE
Q 007306 437 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCI 513 (608)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l 513 (608)
.. .++.. ....+. ...+++.|+|.+..++++ ....|.||-++..+- +.......+...|.++.|+|++-+|
T Consensus 88 ~~--Wkptl-vLlRiN---rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 88 GT--WKPTL-VLLRIN---RAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred Ce--eccce-eEEEec---cceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence 21 22222 122233 578999999999999995 566788887653321 1111111247789999999999999
Q ss_pred EEEEcCCeEEEEeCCCCceeEEEecee---eccCCC-----cccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 514 YVSCKSGHVKVFDTSTLELRCQINLTA---YAQPGT-----ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 514 ~sg~~dg~i~iwd~~~~~~~~~~~~~~---~~~~g~-----~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
++|+.|+..|||..--......-.+.. ..+.|. ....-++-.+.|+| .|+.|+-.+.|++|.+=|...+..
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~ 240 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSE 240 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCch
Confidence 999999999999753211111100000 000000 01123345999999 799999999999999999887753
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=133.09 Aligned_cols=214 Identities=15% Similarity=0.165 Sum_probs=159.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC---eEEEEeCCCcEEEEeCCC-
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD---LFAFGFDDSSILVHCPCT- 393 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~- 393 (608)
||.+.|+|+.|+ |.+|++|+ |-.+.|||.-..+.+..+. +|...|.++.|-|.. .+++|..|..|+++|+..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999 99999999 8899999999888888776 899999999999865 899999999999999984
Q ss_pred ---------CceEEEeeCccccEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceec--ccceeeeeccCCCCccceEEE
Q 007306 394 ---------KKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLC--SKFLHSFQTGLVPETTIVNHI 461 (608)
Q Consensus 394 ---------~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~v 461 (608)
......+..|...|..++..|++ +.+.+++.||+|+-+|++....-. ..+.. ......+..-...++
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~-~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS-ILVNYNPQLIELKCL 206 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccH-HHHHhchhhheeeee
Confidence 13345566799999999999988 789999999999999998732100 00000 000000000246789
Q ss_pred EEcCCCC-EEEEE-eCCcEEEEECCC--------Cc----------eeeeecCCCCC-----------CCeEEEEEecCC
Q 007306 462 QFHPDQI-HLLSI-HEGQIDVYEAPT--------LN----------HTSQLVPDKMD-----------LPITYATYSCDG 510 (608)
Q Consensus 462 ~~sp~~~-~l~~~-~d~~i~iwd~~~--------~~----------~~~~~~~~~~~-----------~~v~~~~~s~~~ 510 (608)
.++|... +|++| +|-..++||.+. +. +++-|.. +|. ..++-++|+|+|
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p-~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP-GHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC-ccccCcccccccceeeeEEEEECCCC
Confidence 9999865 45554 888999999431 11 2332322 221 125678899999
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 511 KCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 511 ~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.-|+..-....|+++|+..++....+.
T Consensus 286 tElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 286 TELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred cEEEEeeCCeEEEEEeecCCCCceeec
Confidence 888877777889999999887666554
No 233
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=4.5e-13 Score=120.57 Aligned_cols=150 Identities=11% Similarity=0.104 Sum_probs=108.7
Q ss_pred EEEEEeCCCCEEEEEcC----------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--E-e
Q 007306 408 TCLAYSLSLNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--I-H 474 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~-~ 474 (608)
..+.|+|+|++|+.-.. -+...+|.++... .++..+..... ++|.+++|+|+|+.+++ | .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~---~~I~~~~WsP~g~~favi~g~~ 81 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKE---GPIHDVAWSPNGNEFAVIYGSM 81 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCC---CceEEEEECcCCCEEEEEEccC
Confidence 45779999988765433 1345556554321 22222222222 57999999999998876 3 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEeCCCCceeEEEeceeeccCCCccccc
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 551 (608)
++.|.+||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+.+.+.+..... .
T Consensus 82 ~~~v~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---------~--- 144 (194)
T PF08662_consen 82 PAKVTLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---------S--- 144 (194)
T ss_pred CcccEEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---------C---
Confidence 6789999995 77766663 5677889999999999998754 6799999998887766531 1
Q ss_pred ccEEEEEecCCCCEEEEEeC------CCcEEEEeCCC
Q 007306 552 YPLVIAAHPLEPNRIALGLT------NGRVHVIEPLE 582 (608)
Q Consensus 552 ~~~~v~~sp~d~~~las~s~------Dg~v~iW~~~~ 582 (608)
.++.++|+| ||++|++++. |..++||+...
T Consensus 145 ~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 145 DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 255899999 8999999874 78899999853
No 234
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=1.3e-12 Score=119.15 Aligned_cols=262 Identities=12% Similarity=0.124 Sum_probs=170.1
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCe--eeeccccCCCCCCeEEEEEe--
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~~s-- 333 (608)
..+-|.++.|..+|.+||+|..+|.|.++.-...... . ......+....++ .++.+ .-...|+.+.|.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-e----y~~~t~fqshepEFDYLkSl---eieEKinkIrw~~~ 95 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-E----YNFQTEFQSHEPEFDYLKSL---EIEEKINKIRWLDD 95 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeeccccccc-c----eeeeeeeeccCcccchhhhh---hhhhhhhhceecCC
Confidence 3567899999999999999999999999865433210 0 0000011111111 01111 134568888998
Q ss_pred ---CCEEEEEeCCcEEEEEcCCCce-----------------------------------eeEe-cCCCCCeEEEEEcCC
Q 007306 334 ---GSHLFSASGGKISIFSLETFQT-----------------------------------LATF-ANPPPIATYFILLPQ 374 (608)
Q Consensus 334 ---~~~l~s~~d~~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~ 374 (608)
..+|+++.|.+|++|.+..... .+.+ ..|..-|.+++++.|
T Consensus 96 ~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD 175 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD 175 (433)
T ss_pred CCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc
Confidence 2356666699999998753111 1111 156667889999999
Q ss_pred C-eEEEEeCCCcEEEEeCCCCce---EEEeeCc-----cccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCcee-c-cc
Q 007306 375 D-LFAFGFDDSSILVHCPCTKKT---KAKLKGH-----QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKL-C-SK 442 (608)
Q Consensus 375 ~-~l~~~~~d~~i~vwd~~~~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~-~-~~ 442 (608)
+ .++++ +|=.|.+|++.-... +-.++.+ ..-|++..|+| ..+.++..+..|+|++.|++....- . .+
T Consensus 176 ~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 176 KETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 9 66654 577899999764321 1122222 34578889999 4577888899999999999842110 0 00
Q ss_pred cee--------eeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC-CCCceeeeecCCCC----------CC---C
Q 007306 443 FLH--------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQLVPDKM----------DL---P 500 (608)
Q Consensus 443 ~~~--------~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~-~~~~~~~~~~~~~~----------~~---~ 500 (608)
... .++.+-. ..|..+.|+++|+++++-.--+|++||+ ...+++.++..+.+ .. .
T Consensus 255 lfEepedp~~rsffseiI---sSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEII---SSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred hhccccCCcchhhHHHHh---hhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 000 0111111 5688999999999999976689999999 45666666654321 12 2
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 501 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 501 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
-..++|+-++.++++|+..+.+++++...|.
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 3568899999999999999999999976553
No 235
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1.1e-12 Score=118.21 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=107.0
Q ss_pred EEEEcCCC-eEEE-Ee---------CCCcEEEEeCCC-CceEEEeeC-ccccEEEEEEeCCCCEEEE--EcCCCcEEEEE
Q 007306 368 YFILLPQD-LFAF-GF---------DDSSILVHCPCT-KKTKAKLKG-HQNRITCLAYSLSLNVLVS--SGADAQLCVWD 432 (608)
Q Consensus 368 ~~~~~~~~-~l~~-~~---------~d~~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s--~~~d~~i~vwd 432 (608)
.+.|+|+| .|++ .. .-+...+|.++. +.....+.- ..++|.+++|+|+|+.+++ |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 67899999 4432 22 112344554422 233333432 3457999999999998654 44678999999
Q ss_pred CCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee---CCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 433 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
++. ..+.++.. ..++.+.|+|+|+++++ |. .|.|.+||+++.+.+.... ...++.++|||
T Consensus 90 ~~~------~~i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~WsP 153 (194)
T PF08662_consen 90 VKG------KKIFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWSP 153 (194)
T ss_pred Ccc------cEeEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEcC
Confidence 974 33342221 46789999999999998 42 4679999999888887763 34578999999
Q ss_pred CCCEEEEEEc------CCeEEEEeCCCCceeEEE
Q 007306 509 DGKCIYVSCK------SGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 509 ~~~~l~sg~~------dg~i~iwd~~~~~~~~~~ 536 (608)
||+++++++. |+.++||+.. |+++...
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9999998874 7889999985 6555544
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.9e-12 Score=131.32 Aligned_cols=210 Identities=16% Similarity=0.131 Sum_probs=136.0
Q ss_pred CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE
Q 007306 343 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 418 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 418 (608)
..|.++|.. |...+.+..+...+.+.+|+||| .|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 357777764 55555565677788999999999 77766543 359999999887543 3333455678899999998
Q ss_pred EE-EEcCCCcEEEEEC--CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEE--ECCCCceeee
Q 007306 419 LV-SSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVY--EAPTLNHTSQ 491 (608)
Q Consensus 419 l~-s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iw--d~~~~~~~~~ 491 (608)
|+ +.+.+|...+|.+ .++. ...+. .+. +......|+|||+.|+. + .++...+| +..++... .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~------~~~lt-~~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~ 322 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG------LRRLT-QSS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-R 322 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC------cEECC-CCC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-E
Confidence 76 4677887666654 4322 22121 222 34567889999999886 4 33555555 55455432 2
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
+... .......+|||||++|+..+.++ .|++||+.+++... +.. + . ... ..+|+| |+.+|+.
T Consensus 323 lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~------~--~-~~~--~p~~sp-dg~~l~~ 387 (427)
T PRK02889 323 VTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD------T--T-RDE--SPSFAP-NGRYILY 387 (427)
T ss_pred EecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC------C--C-Ccc--CceECC-CCCEEEE
Confidence 2221 23344678999999999877654 69999999887543 221 1 1 122 678999 7888888
Q ss_pred EeCCC-c--EEEEeC
Q 007306 569 GLTNG-R--VHVIEP 580 (608)
Q Consensus 569 ~s~Dg-~--v~iW~~ 580 (608)
++.++ . +.+-++
T Consensus 388 ~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 388 ATQQGGRSVLAAVSS 402 (427)
T ss_pred EEecCCCEEEEEEEC
Confidence 77554 3 444444
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=8.5e-12 Score=127.77 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=148.2
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC---CCcEEEEecCCCcceeeecccceeeEEee
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQ 308 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (608)
..|.+||.++ ...+.++ .+...+.+.+|||||+.|+..+. +..+.+|++.+++
T Consensus 179 ~~l~~~d~dg----~~~~~lt----~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---------------- 234 (429)
T PRK03629 179 YELRVSDYDG----YNQFVVH----RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---------------- 234 (429)
T ss_pred eeEEEEcCCC----CCCEEee----cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC----------------
Confidence 3688888874 2233321 15678999999999999987653 2356666554443
Q ss_pred CCCCeeeeccccCCCCCCeEEEEEe--CCEEEEE-e-CC--cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEe
Q 007306 309 PSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-S-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 381 (608)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~-~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 381 (608)
..... .....+..++|+ |+.|+.. + +| .|.+||+.+++..+.. .+...+....|+||| .|+..+
T Consensus 235 -----~~~l~---~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s 305 (429)
T PRK03629 235 -----VRQVA---SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTS 305 (429)
T ss_pred -----eEEcc---CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEe
Confidence 22111 122334467899 7777755 3 44 5889999887765443 344567789999999 776666
Q ss_pred CC-C--cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCC---CcEEEEECCCCceecccceeeeeccCCCCc
Q 007306 382 DD-S--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPET 455 (608)
Q Consensus 382 ~d-~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 455 (608)
.+ + .|+++|+.+++.. .+..+........|+|||++++..+.+ ..|.+||+.+++.. . +....
T Consensus 306 ~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~---~---Lt~~~---- 374 (429)
T PRK03629 306 DQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ---V---LTDTF---- 374 (429)
T ss_pred CCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE---E---eCCCC----
Confidence 54 3 4566677776543 333344456678899999998876543 35888999875421 1 22111
Q ss_pred cceEEEEEcCCCCEEEE-EeCC---cEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 456 TIVNHIQFHPDQIHLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~-~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
......|+|||+.|+. +.++ .+.++++ +|.....+.. |.+.+...+|+|
T Consensus 375 -~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~--~~~~~~~p~Wsp 427 (429)
T PRK03629 375 -LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA--TDGQVKFPAWSP 427 (429)
T ss_pred -CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc--CCCCcCCcccCC
Confidence 2336789999999998 4444 3788888 5665566653 467788888887
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=9.4e-12 Score=128.26 Aligned_cols=195 Identities=15% Similarity=0.074 Sum_probs=136.2
Q ss_pred CCCCCeEEEEEe--CCEEEEEe----CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCC--cEEEEeC
Q 007306 322 DPKDSISCFALR--GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP 391 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~--~i~vwd~ 391 (608)
.|...+.+.+|+ |+.|+..+ +..|.+||+.+++.. .+..+.+.+...+|+||| .|+ +.+.++ .|++||+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 477789999999 77887766 257999999887653 344556667788999999 654 555555 4888899
Q ss_pred CCCceEEEeeCccccEEEEEEeCCCCEEEEEcC-CC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 392 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
.++... .+..+........|+|||+.++..+. +| .|+++|+.+++. +.+..+ . +.+....|+|||+
T Consensus 278 ~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~------~~lt~~-~---~~~~~~~~SpdG~ 346 (435)
T PRK05137 278 RSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP------RRISFG-G---GRYSTPVWSPRGD 346 (435)
T ss_pred CCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe------EEeecC-C---CcccCeEECCCCC
Confidence 887654 45556566678899999999887664 33 588888776432 112211 1 3456788999999
Q ss_pred EEEE-Ee-C--CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC------CeEEEEeCCCCce
Q 007306 469 HLLS-IH-E--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTSTLEL 532 (608)
Q Consensus 469 ~l~~-~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d------g~i~iwd~~~~~~ 532 (608)
.|+. .. . ..|.+||..++. .+.+.. ...+....|+|||++|+..+.+ ..++++|+..+..
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 9987 32 2 368889985544 334432 2346778999999998876543 3688888876654
No 239
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=1e-12 Score=126.59 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=138.6
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceee-EeecCCCCCCcEEEEEEeeCCC-EEEEEeCCCcEEEEecCCCccee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~-~~l~~~~h~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
-.|++--+..|-.-|.|.+.|... .++.. +.-+..-.+..|+|+.|-|.+. .++.+-.+|.+.++|..-.....
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~----~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t 256 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPIN----FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT 256 (636)
T ss_pred cCCCCcceEEeeccCceEEecchh----hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC
Confidence 467788899999999999988763 22111 1011111468999999999554 44555668999999763221110
Q ss_pred e------ecccceeeEEeeCCCC-eee-eccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCC
Q 007306 296 E------EENVNMESQLYQPSSK-LVM-TNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP 364 (608)
Q Consensus 296 ~------~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~ 364 (608)
. .....+.+..|..... ..+ +..+ -.+.|+.++|+ |++||+.+ ||.++|+|..+.+.+..++..-+
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~---~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG 333 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSKKTRNPVARWHI---GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG 333 (636)
T ss_pred CCcccccCCCCeeEEeeeeccccCCccceeEe---ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhcc
Confidence 0 2222333333332221 111 1111 34588999999 99999999 99999999999888888888888
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
...|++|+||| +|++|++|--|.||.+..++.+..-++|.+.|+.|+|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999 999999999999999999999999999999999999983
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.3e-12 Score=119.60 Aligned_cols=214 Identities=14% Similarity=0.119 Sum_probs=158.2
Q ss_pred CCeEEEeecCCeEEEeeccCCCCC-CceeeEeecCCCCCCcEEEEEEeeCCCEE-EEEeCC--CcEEEEecCCCcceeee
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQT--ATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~-~~~~~~~l~~~~h~~~V~~~~fsp~g~~l-~s~s~d--g~i~iw~~~~~~~~~~~ 297 (608)
...|+++-.+|.+.+|..+.+... ..... +. -...+..|.-+|...++ ++||.. ..++|||++..++
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~--la---~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q---- 185 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIK--LA---TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ---- 185 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCcccccccee--ee---cCCceeeeccCCCCCceEecCchhcccceeeeeccccee----
Confidence 456788889999999998843311 11221 11 23566777777765555 558888 8999999998865
Q ss_pred cccceeeEEeeCCCCe--eeeccccCCCCCCeEEEEEe-C---CEEEEEe-CCcEEEEEcCCC-ceeeEecCCCCCeEEE
Q 007306 298 ENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR-G---SHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYF 369 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~~s-~---~~l~s~~-d~~i~vwd~~~~-~~~~~~~~~~~~v~~~ 369 (608)
+|..++-. .+.. .-.-.++++.|- + ..|+++. -+++++||...+ +++..+.-...+++++
T Consensus 186 --------iw~aKNvpnD~L~L----rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 186 --------IWSAKNVPNDRLGL----RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred --------eeeccCCCCccccc----eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 77654322 1100 122334566776 4 5789999 899999999864 5677888788899999
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 370 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 370 ~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
...|++ .+++|...+.+..||+++++.... +++..+.|+++..+|.+.++++++-|+.++|+|+.+.+....-.+.
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-- 331 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-- 331 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh--
Confidence 999999 999999999999999999988866 8889999999999999999999999999999999984322221222
Q ss_pred eccCCCCccceEEEEEcCC
Q 007306 448 QTGLVPETTIVNHIQFHPD 466 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~ 466 (608)
..++++.+.++
T Consensus 332 --------s~lt~il~~~~ 342 (412)
T KOG3881|consen 332 --------SRLTFILLRDD 342 (412)
T ss_pred --------ccccEEEecCC
Confidence 35667777654
No 241
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=9.6e-12 Score=127.54 Aligned_cols=212 Identities=14% Similarity=0.079 Sum_probs=136.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEE--eC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVH--CP 391 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~vw--d~ 391 (608)
.+...+.+.+|+ |+.|+..+ + ..|.+||+.+++... +....+.+.+..|+||| .|+ +.+.++...+| |+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 271 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNA 271 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEEC
Confidence 366788899999 77888776 2 359999999887643 33334556688999999 665 56677765555 55
Q ss_pred CCCceEEEeeCccccEEEEEEeCCCCEEEEEcC-CCcEEEEEC--CCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 392 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
.++. ...+..+........|+|||+.++..+. ++...+|.+ .++.. ..+. ..+ .......|+|||+
T Consensus 272 ~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 340 (427)
T PRK02889 272 DGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA---QRVT--FTG-----SYNTSPRISPDGK 340 (427)
T ss_pred CCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce---EEEe--cCC-----CCcCceEECCCCC
Confidence 5554 4445545555677889999998876654 466666655 33221 1111 122 1234678999999
Q ss_pred EEEE-EeCC---cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEeCCCCceeEEEeceee
Q 007306 469 HLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAY 541 (608)
Q Consensus 469 ~l~~-~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~ 541 (608)
+++. +.++ .|.+||+.+++.. .+.. ........|+|||++|+.++.++ .+++.+. ++.....+...
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~---~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~-- 413 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVT-ALTD---TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ-- 413 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeE-EccC---CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--
Confidence 9987 4333 5999999887654 3332 22346789999999998877654 4666666 35544444321
Q ss_pred ccCCCcccccccEEEEEec
Q 007306 542 AQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 542 ~~~g~~~~~v~~~~v~~sp 560 (608)
.+.+. ..+|+|
T Consensus 414 ------~g~~~--~p~wsp 424 (427)
T PRK02889 414 ------GGDVR--EPSWGP 424 (427)
T ss_pred ------CCCCC--CCccCC
Confidence 22233 677877
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=6.6e-12 Score=129.22 Aligned_cols=198 Identities=18% Similarity=0.143 Sum_probs=134.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCC--cEEEEeC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCP 391 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~--~i~vwd~ 391 (608)
.+...+.+.+|+ |+.|+.++ + ..|.+||+.+++... +....+...+..|+||| .++ +.+.+| .|++||+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 366778899999 77888776 3 369999998876543 33334445578999999 554 555555 6999999
Q ss_pred CCCceEEEeeCccccEEEEEEeCCCCEEEEEcC-CCc--EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 392 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
.+++.. .+..+.......+|+|||+.|+.++. +|. |+++|+.+++. ..+. ..+ .....++|+|||+
T Consensus 280 ~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---~~lt--~~g-----~~~~~~~~SpDG~ 348 (433)
T PRK04922 280 GSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---ERLT--FQG-----NYNARASVSPDGK 348 (433)
T ss_pred CCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEee--cCC-----CCccCEEECCCCC
Confidence 988754 34445555567899999998887664 444 66667766431 1111 122 2344689999999
Q ss_pred EEEEE-eC-C--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEeCCCCceeEEE
Q 007306 469 HLLSI-HE-G--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQI 536 (608)
Q Consensus 469 ~l~~~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~ 536 (608)
+++.. .+ + .|.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|+++++..+ ....+
T Consensus 349 ~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l 418 (433)
T PRK04922 349 KIAMVHGSGGQYRIAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRL 418 (433)
T ss_pred EEEEEECCCCceeEEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEc
Confidence 99873 32 2 5999999887754 3432 2234567899999998877664 46888888644 34444
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=5.5e-10 Score=111.20 Aligned_cols=243 Identities=15% Similarity=0.164 Sum_probs=154.6
Q ss_pred CCeEEEEEe--CCEEEEEe-C----CcEEEEEcCCC--ce--eeEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeC
Q 007306 325 DSISCFALR--GSHLFSAS-G----GKISIFSLETF--QT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCP 391 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~-d----~~i~vwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vwd~ 391 (608)
.....++++ +++|+++. . +.|..|++... +. +............++++|++ +++++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 344557777 77888876 3 57888888653 32 33333344455689999999 666554 6889999999
Q ss_pred CC-CceEEE---ee----------CccccEEEEEEeCCCCEEEEEcC-CCcEEEEECCCCc--eecccceeeeeccCCCC
Q 007306 392 CT-KKTKAK---LK----------GHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK--KLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 392 ~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~ 454 (608)
.. |..... +. .......++.++|+|+++++... ...|.+|++.... ......+. ...+
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~-~~~G---- 191 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIK-VPPG---- 191 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEE-CSTT----
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccc-cccC----
Confidence 87 433322 21 12345789999999998877643 4679999997744 11111111 2222
Q ss_pred ccceEEEEEcCCCCEEEE-E-eCCcEEEEECC--CCc--eeeeecCC---C-CCCCeEEEEEecCCCEEEEEEc-CCeEE
Q 007306 455 TTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--TLN--HTSQLVPD---K-MDLPITYATYSCDGKCIYVSCK-SGHVK 523 (608)
Q Consensus 455 ~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~--~~~--~~~~~~~~---~-~~~~v~~~~~s~~~~~l~sg~~-dg~i~ 523 (608)
...+.++|+|+++++++ . .++.|.++++. ++. .+..+... . .......++++|||++|+++.. ++.|.
T Consensus 192 -~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~ 270 (345)
T PF10282_consen 192 -SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS 270 (345)
T ss_dssp -SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred -CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence 46789999999999988 4 67889999987 443 22222211 1 1236889999999999988765 58899
Q ss_pred EEeCC--CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe-CCCcEEEEeCCC
Q 007306 524 VFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLE 582 (608)
Q Consensus 524 iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iW~~~~ 582 (608)
+|++. ++++...-... .....+..++++| ++++|+++. .++.|.+|++..
T Consensus 271 vf~~d~~~g~l~~~~~~~--------~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 271 VFDLDPATGTLTLVQTVP--------TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEECTTTTTEEEEEEEE--------ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEecCCCceEEEEEEe--------CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeC
Confidence 99993 34433221111 1112355899999 788888777 667999998753
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=4.6e-11 Score=123.30 Aligned_cols=210 Identities=16% Similarity=0.102 Sum_probs=140.3
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
.|.++|... ...+.+..+...+...+|+||| .|+.+..+ ..|++||+.+++... +..+...+.+++|+|||+.|
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 577888753 3345555566678899999999 77766543 479999999886543 33355567778999999877
Q ss_pred EE-EcCCC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee-CC--cEEEEECCCCceeeee
Q 007306 420 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-EG--QIDVYEAPTLNHTSQL 492 (608)
Q Consensus 420 ~s-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~-d~--~i~iwd~~~~~~~~~~ 492 (608)
+. .+.++ .|++||+.++.. ..+. .+. .......|+|||+.|+. +. ++ .|+++|+.+++.. .+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~------~~l~-~~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l 317 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQL------TRLT-NGP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RL 317 (417)
T ss_pred EEEECCCCCccEEEEECCCCCE------EECC-CCC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee
Confidence 64 44444 588899887432 1111 121 23446789999998886 32 22 6888898776643 33
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
.. +...+....|+|+|++++.++.++ .|.+||+.++.... +.. + .. . ...+|+| |+.+|+..
T Consensus 318 ~~--~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~------~--~~-~--~~p~~sp-dg~~l~~~ 382 (417)
T TIGR02800 318 TF--RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD------T--GL-D--ESPSFAP-NGRMILYA 382 (417)
T ss_pred ec--CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC------C--CC-C--CCceECC-CCCEEEEE
Confidence 32 245677889999999999988776 89999998865432 221 1 11 1 2568999 78888777
Q ss_pred eCCC---cEEEEeCC
Q 007306 570 LTNG---RVHVIEPL 581 (608)
Q Consensus 570 s~Dg---~v~iW~~~ 581 (608)
+.++ .+.+.+..
T Consensus 383 ~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 383 TTRGGRGVLGLVSTD 397 (417)
T ss_pred EeCCCcEEEEEEECC
Confidence 7654 35555543
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.4e-10 Score=119.85 Aligned_cols=212 Identities=14% Similarity=0.043 Sum_probs=138.1
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
.|.++|.+.+. .+.+..+...+....|+||| .|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777876444 45555567788899999999 77665533 369999999886543 32233445578999999988
Q ss_pred EE-EcCCC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eC--CcEEEEECCCCceeeee
Q 007306 420 VS-SGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 420 ~s-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~ 492 (608)
+. .+.+| .|++||+.+++.. . +. .+. .......|+|||+.++. + .+ ..|+++|+.+++..+ +
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~---~---lt-~~~---~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l 326 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS---R---VT-NHP---AIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V 326 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE---E---cc-cCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence 74 44454 5888899874321 1 11 222 34556789999998886 3 22 358888887776433 3
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
... ........|+|||++|+..+.+ + .|++||+.+++... +.. + .. .. ...|+| |+.+++..
T Consensus 327 t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~------~--~~-~~--~p~~sp-dg~~i~~~ 391 (430)
T PRK00178 327 TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD------T--SL-DE--SPSVAP-NGTMLIYA 391 (430)
T ss_pred ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC------C--CC-CC--CceECC-CCCEEEEE
Confidence 221 2334467899999999877653 3 58899999886432 221 1 11 11 458999 78888776
Q ss_pred eCC---CcEEEEeCCCC
Q 007306 570 LTN---GRVHVIEPLES 583 (608)
Q Consensus 570 s~D---g~v~iW~~~~~ 583 (608)
+.+ ..|.++++..+
T Consensus 392 ~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 392 TRQQGRGVLMLVSINGR 408 (430)
T ss_pred EecCCceEEEEEECCCC
Confidence 644 34667777543
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.5e-10 Score=112.69 Aligned_cols=270 Identities=12% Similarity=0.117 Sum_probs=176.8
Q ss_pred CceeEeecCCCCeEEEe-----ec-----CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCC
Q 007306 212 QSRESTSLPDADSAVCA-----KS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA 281 (608)
Q Consensus 212 ~~~~~~~s~dg~~l~~~-----~~-----d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg 281 (608)
......|||-|.+|.+= .. ...+++|+++++.....+.. . .+.. |+..|++|..+ ++--..+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~-----k-~Q~~-W~~qfs~dEsl-~arlv~n 146 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQK-----K-MQNG-WVPQFSIDESL-AARLVSN 146 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheeh-----h-hhcC-cccccccchhh-hhhhhcc
Confidence 34445799999988752 11 24477999985221122221 1 2333 89999999874 4434456
Q ss_pred cEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-C---CEEEEEe------CCcEEEEEcC
Q 007306 282 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSAS------GGKISIFSLE 351 (608)
Q Consensus 282 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~---~~l~s~~------d~~i~vwd~~ 351 (608)
.+.+|+...... .... -|...|+.+.++ + ..+++-- -+.|++|...
T Consensus 147 ev~f~~~~~f~~---------------------~~~k---l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 147 EVQFYDLGSFKT---------------------IQHK---LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP 202 (566)
T ss_pred eEEEEecCCccc---------------------eeee---eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence 788777654321 1111 166788888888 4 2444422 2579999876
Q ss_pred CCceeeEec--C-CCCCeEEEEEcCCC--eEEE--EeCCC---------cEEEEeCCCCceEEEeeCccccEEEEEEeCC
Q 007306 352 TFQTLATFA--N-PPPIATYFILLPQD--LFAF--GFDDS---------SILVHCPCTKKTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 352 ~~~~~~~~~--~-~~~~v~~~~~~~~~--~l~~--~~~d~---------~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 415 (608)
....-..+. . ....-..+.|++-| +|+. ..-|+ +++++++....+.-.+. ..++|.++.|+|+
T Consensus 203 ~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 203 EEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPS 281 (566)
T ss_pred cccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCC
Confidence 322211111 0 11122357888877 3333 33333 68888887444444443 5789999999999
Q ss_pred CCEEE--EEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E---eCCcEEEEECCCCcee
Q 007306 416 LNVLV--SSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHT 489 (608)
Q Consensus 416 ~~~l~--s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~---~d~~i~iwd~~~~~~~ 489 (608)
|+.++ .|-+--.+.+||++. .++..+.+ ++=+++-|+|.|++++. | -.|.|-+||+.+.+++
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~------~~v~df~e------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRG------KPVFDFPE------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred CCEEEEEEecccceEEEEcCCC------CEeEeCCC------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 97755 456678899999987 56664555 35678999999999987 5 3589999999998888
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEeCCCC
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTL 530 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~ 530 (608)
..+.. ..-+-+.|+|||.++++++. |+.++||+....
T Consensus 350 ~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 350 AKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 88753 44566899999999999875 688999998643
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=1.3e-11 Score=112.77 Aligned_cols=257 Identities=15% Similarity=0.208 Sum_probs=171.5
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc-----eeeEecCCC------------CCeEEEEEcCCC---eEEE
Q 007306 323 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 379 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~---~l~~ 379 (608)
...-|.+|.|. |.+|++|. +|.|.++.-.... ....++.|. ..|..+.|.+++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 44668899999 99999999 9999998654321 233444443 356788998887 7888
Q ss_pred EeCCCcEEEEeCCCCce-----------------------------------EEEe-eCccccEEEEEEeCCCCEEEEEc
Q 007306 380 GFDDSSILVHCPCTKKT-----------------------------------KAKL-KGHQNRITCLAYSLSLNVLVSSG 423 (608)
Q Consensus 380 ~~~d~~i~vwd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~l~s~~ 423 (608)
.+.|++|++|.+..... .+.+ .+|...|+++.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 88999999998753211 0111 24778899999999999988764
Q ss_pred CCCcEEEEECCCCceecccceeeeeccC-CCCccceEEEEEcCCCCEEE--EEeCCcEEEEECCCCcee----eeecCCC
Q 007306 424 ADAQLCVWDAVGWKKLCSKFLHSFQTGL-VPETTIVNHIQFHPDQIHLL--SIHEGQIDVYEAPTLNHT----SQLVPDK 496 (608)
Q Consensus 424 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~l~--~~~d~~i~iwd~~~~~~~----~~~~~~~ 496 (608)
|=.|.+|++.-... ...+-.+.... ...+.-|++..|+|..-.++ +++.|+|++.|++...+. +.+..+.
T Consensus 184 -dLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 78899999865221 11111111110 00013578889999754333 368899999999843211 1111110
Q ss_pred ----------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeC-CCCceeEEEeceeeccCC----Ccccccc-cEEEEEec
Q 007306 497 ----------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT-STLELRCQINLTAYAQPG----TISLELY-PLVIAAHP 560 (608)
Q Consensus 497 ----------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~-~~~~~~~~~~~~~~~~~g----~~~~~v~-~~~v~~sp 560 (608)
--..|..+.|+++|+|+++-. --+|++||+ ...+++.+++.+.+..+. -+...++ -..++|+.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 135688999999999999863 278999999 566777777765443211 0122222 23789998
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 561 LEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
++.+++|||....+++++...|.
T Consensus 340 -~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 -NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -CcceEecccccceEEEecCCCCc
Confidence 78899999999999999976654
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=3.1e-11 Score=125.58 Aligned_cols=193 Identities=10% Similarity=0.023 Sum_probs=149.8
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcccc----EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR----ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
..+.-+. .++.+..++.+.+||...+............ ..-+.++++.-++++|+.-+.|.+|+..... .+
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn----~p 168 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN----KP 168 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----Cc
Confidence 4444555 8888999999999999887766655432211 1122346667789999999999999987321 23
Q ss_pred eeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 522 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i 522 (608)
. ...+|. +.|.++.++.||+++++ +.|.++++|++++.+..... .-+|...++.++|.|+ .++++++|.+.
T Consensus 169 ~--~l~GHe---G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~-~fgHsaRvw~~~~~~n--~i~t~gedctc 240 (967)
T KOG0974|consen 169 I--RLKGHE---GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCT-GFGHSARVWACCFLPN--RIITVGEDCTC 240 (967)
T ss_pred c--eecccC---CceEEEEEccCCcEEEEEecCcceeeeecccccccCcc-cccccceeEEEEeccc--eeEEeccceEE
Confidence 3 367888 89999999999999999 78999999999998876522 2258999999999999 99999999999
Q ss_pred EEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 523 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 523 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
++|+.+..+ +..+. +|....++ .++.++ +....+|++.||.+++|++....
T Consensus 241 rvW~~~~~~-l~~y~-------~h~g~~iw--~~~~~~-~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 241 RVWGVNGTQ-LEVYD-------EHSGKGIW--KIAVPI-GVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEEecccce-ehhhh-------hhhhccee--EEEEcC-CceEEEeeccCcchhhhhhhccc
Confidence 999765443 33444 55566678 888888 78899999999999999987643
No 249
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=5e-09 Score=101.57 Aligned_cols=273 Identities=14% Similarity=0.074 Sum_probs=163.8
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC----------CCcEEEEecCCCcceeeecccc
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
++|.+.|..+ .+.... ++. |.... .+ +||||+.|+.+.. +..|.+||..+.+....
T Consensus 27 ~~v~ViD~~~----~~v~g~-i~~-G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~----- 92 (352)
T TIGR02658 27 TQVYTIDGEA----GRVLGM-TDG-GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD----- 92 (352)
T ss_pred ceEEEEECCC----CEEEEE-EEc-cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-----
Confidence 7899999874 333321 221 22222 24 9999999888776 67888888777765211
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCe
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILLPQDL 376 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 376 (608)
...+.--+. ........++++ |++++... +..|.+.|+.+++.+..+.-... ..-+..++++.
T Consensus 93 -------i~~p~~p~~----~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~ 160 (352)
T TIGR02658 93 -------IELPEGPRF----LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTF 160 (352)
T ss_pred -------EccCCCchh----hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCcc
Confidence 111100000 011223356777 78888766 58999999999999988875331 11222222221
Q ss_pred EEEEeCCCcEEEEeCCC-CceE-E---EeeCccccEE-EEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeee-
Q 007306 377 FAFGFDDSSILVHCPCT-KKTK-A---KLKGHQNRIT-CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ- 448 (608)
Q Consensus 377 l~~~~~d~~i~vwd~~~-~~~~-~---~~~~~~~~v~-~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~- 448 (608)
. +-+.||......+.+ |+.. . .+.+...++. .-.|.+ +|+++..... |+|.+.|+..........+..+.
T Consensus 161 ~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 161 F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccc
Confidence 1 222344333322221 2211 1 1111000000 003456 7887776665 99999997654333333333111
Q ss_pred ----ccCCCCccceEEEEEcCCCCEEEE-Ee--C--------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC-E
Q 007306 449 ----TGLVPETTIVNHIQFHPDQIHLLS-IH--E--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-C 512 (608)
Q Consensus 449 ----~~~~~~~~~v~~v~~sp~~~~l~~-~~--d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 512 (608)
.+-.| +...-++++|+++.+++ .. . +.|.++|..+++.+..+.. ...+..++++||++ +
T Consensus 239 ~~~~~~wrP--~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 239 AEKADGWRP--GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPL 313 (352)
T ss_pred cccccccCC--CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeE
Confidence 12223 45556999999998887 31 2 4799999999999999875 56899999999999 8
Q ss_pred EEEEE-cCCeEEEEeCCCCceeEEEe
Q 007306 513 IYVSC-KSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 513 l~sg~-~dg~i~iwd~~~~~~~~~~~ 537 (608)
|++.. .++.|.++|..+++.+..+.
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEeeec
Confidence 87666 57889999999999988873
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.6e-10 Score=116.26 Aligned_cols=210 Identities=14% Similarity=0.110 Sum_probs=132.0
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
.+.++|..... .+.+......+.+..|+||| .|+..+. ++ .|++||+.+++... +....+......|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 56667765433 34455566778899999999 7766543 33 68999998876533 22222334578999999987
Q ss_pred EE-EcCCCc--EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eC--CcEEEEECCCCceeeee
Q 007306 420 VS-SGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE--GQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 420 ~s-~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d--~~i~iwd~~~~~~~~~~ 492 (608)
+. .+.++. |+++|+.+++. ..+.. +. ......+|+|||+.++. + .+ ..|+++|+.+++... +
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~------~~lt~-~~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL------TRITR-HR---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe------EECcc-CC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E
Confidence 65 455664 77778877432 11221 22 34567899999999887 3 23 357778887776533 3
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
... .......+|+|||++|+..+.+ + .|.++|+.+++... +.. + .. .. ..+|+| |+.+|+..
T Consensus 346 t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~------~--~~-d~--~ps~sp-dG~~I~~~ 410 (448)
T PRK04792 346 TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTS------T--RL-DE--SPSVAP-NGTMVIYS 410 (448)
T ss_pred ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccC------C--CC-CC--CceECC-CCCEEEEE
Confidence 221 2233457899999998876553 3 56677888876432 221 1 11 11 457999 78877666
Q ss_pred eC-CCc--EEEEeCC
Q 007306 570 LT-NGR--VHVIEPL 581 (608)
Q Consensus 570 s~-Dg~--v~iW~~~ 581 (608)
+. +|. +.+++..
T Consensus 411 ~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 411 TTYQGKQVLAAVSID 425 (448)
T ss_pred EecCCceEEEEEECC
Confidence 54 343 6666763
No 251
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=7.6e-11 Score=115.65 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=149.6
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCCcceee-----ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-----CC-E
Q 007306 268 SHSGDFLVALTQTATHKLWKWQSNKQSLE-----EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GS-H 336 (608)
Q Consensus 268 sp~g~~l~s~s~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----~~-~ 336 (608)
.|.+.|+|....||.++||+...++.... ..+.......|...-+ .......+..+. +. .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~---------~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSAD---------YSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEec---------cchHHHHhHHHHhhccCCceE
Confidence 45678999999999999999988876443 1112222233331100 011111111111 22 4
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEE
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 412 (608)
++-|. .|.|.+|++..|+....+. .|.+.|.++.++.+- .|.+++.|+.+..|+...++.++.+++....+.+++.
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEE
Confidence 55566 8999999999999888776 789999999998888 9999999999999999999999999998899999999
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC-----CCEEEEE--eCCcEEEEECCC
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-----QIHLLSI--HEGQIDVYEAPT 485 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-----~~~l~~~--~d~~i~iwd~~~ 485 (608)
+|||..+++++ +.|++||+++. +.+. .+.||. ++|+++.|.-+ |.+++++ .+..+.+|-+..
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~k-----evv~-~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETK-----EVVI-TFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCc-----eEEE-EecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999886 68999999993 3444 788998 89999999877 7888884 566777886643
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=2.1e-09 Score=109.04 Aligned_cols=295 Identities=10% Similarity=0.052 Sum_probs=182.0
Q ss_pred CCCeEEEeecCCeEEEeeccCCCCCCcee-eEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecc
Q 007306 221 DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEEN 299 (608)
Q Consensus 221 dg~~l~~~~~d~~i~iWd~~~~~~~~~~~-~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~ 299 (608)
.+..+++++.+|.+.-+|..+ ++.. .+.+.. .+.. ....++..++.++.+|.+..+|..+++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t----G~~~W~~~~~~-----~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~------ 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET----GKRLWRVDLDE-----RLSG-GVGADGGLVFVGTEKGEVIALDAEDGKE------ 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC----CcEeeeecCCC-----Cccc-ceEEcCCEEEEEcCCCEEEEEECCCCcE------
Confidence 466888888899999999874 3332 222222 1111 1123567788889999999999888876
Q ss_pred cceeeEEeeCCCCeeeeccccCCCCCCeEE-EEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeE-----EEEEc
Q 007306 300 VNMESQLYQPSSKLVMTNDIAADPKDSISC-FALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-----YFILL 372 (608)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~-----~~~~~ 372 (608)
+|....+. .+.+ ....+..++.+. ++.+..||.++|+.+..+........ +...
T Consensus 128 ------~W~~~~~~------------~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~- 188 (377)
T TIGR03300 128 ------LWRAKLSS------------EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI- 188 (377)
T ss_pred ------eeeeccCc------------eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-
Confidence 67643221 1111 112355666666 99999999999998887764332211 1111
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceEEEeeCccc-------cEEEEEEeC--CCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 373 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 373 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
.++.++.+..++.+..+|+.+|+.+........ ....+.-+| .+..++.++.+|.++.||..+++......
T Consensus 189 ~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 189 ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 123677788889999999999987654331100 000111111 34577778889999999999865432211
Q ss_pred eeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 522 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i 522 (608)
.. ....... ++..+++ +.+|.++.+|..+|+.+....... .....+... .+..|++++.+|.|
T Consensus 269 ~~-----------~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l 332 (377)
T TIGR03300 269 AS-----------SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELK-YRQLTAPAV--VGGYLVVGDFEGYL 332 (377)
T ss_pred cC-----------CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEcccccc-CCccccCEE--ECCEEEEEeCCCEE
Confidence 11 1112222 3455555 588999999999998776552211 112222222 46789999999999
Q ss_pred EEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEE
Q 007306 523 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 578 (608)
Q Consensus 523 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 578 (608)
+++|..+|+.+..+... ...+.. ..++. + +.|..++.||.|..|
T Consensus 333 ~~~d~~tG~~~~~~~~~--------~~~~~~-sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 333 HWLSREDGSFVARLKTD--------GSGIAS-PPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEECCCCCEEEEEEcC--------CCcccc-CCEEE--C-CEEEEEeCCceEEEe
Confidence 99999999999887642 111221 22222 3 458888899999876
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=3.2e-10 Score=111.36 Aligned_cols=190 Identities=13% Similarity=0.107 Sum_probs=139.0
Q ss_pred cCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEe------e--------------CCCEEEEEe
Q 007306 219 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS------H--------------SGDFLVALT 278 (608)
Q Consensus 219 s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fs------p--------------~g~~l~s~s 278 (608)
.|-+.++|....||.+|+|+....+...++.. ...-.+..++..|. | |...++-|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAP----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeecc----chhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 35567899999999999999985221111111 10012233333332 2 122455555
Q ss_pred CCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCce
Q 007306 279 QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT 355 (608)
Q Consensus 279 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~ 355 (608)
..|.|.+|++..+ ++......++|.+.|.++.++ -..|.+++ |+.+..|+..+++.
T Consensus 78 ~~g~v~~ys~~~g---------------------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~ 136 (541)
T KOG4547|consen 78 PQGSVLLYSVAGG---------------------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI 136 (541)
T ss_pred CCccEEEEEecCC---------------------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee
Confidence 5666665555444 443333334799999999999 66889998 99999999999999
Q ss_pred eeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC-----CCEEEE-EcCCCcE
Q 007306 356 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS-----LNVLVS-SGADAQL 428 (608)
Q Consensus 356 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s-~~~d~~i 428 (608)
++...+....+.+++++||+ .+++++ ++|++||+.+++.+..|.||.++|+++.|.-+ |.++.+ ...+..+
T Consensus 137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 99999999999999999999 888876 68999999999999999999999999999876 566554 4456678
Q ss_pred EEEECCC
Q 007306 429 CVWDAVG 435 (608)
Q Consensus 429 ~vwd~~~ 435 (608)
.+|-+..
T Consensus 215 ~~w~v~~ 221 (541)
T KOG4547|consen 215 TVWVVEK 221 (541)
T ss_pred eEEEEEc
Confidence 8887655
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.33 E-value=1.6e-09 Score=110.02 Aligned_cols=275 Identities=11% Similarity=0.045 Sum_probs=173.3
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 007306 270 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF 348 (608)
Q Consensus 270 ~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vw 348 (608)
.+..+++++.+|.+.-+|..+++. +|....+... .......+..++.++ ++.+..+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~------------~W~~~~~~~~-----------~~~p~v~~~~v~v~~~~g~l~al 120 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR------------LWRVDLDERL-----------SGGVGADGGLVFVGTEKGEVIAL 120 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE------------eeeecCCCCc-----------ccceEEcCCEEEEEcCCCEEEEE
Confidence 366788999999999999888876 7764433211 112233466777777 9999999
Q ss_pred EcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccE-----EEEEEeCCCCEEEEEc
Q 007306 349 SLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSSG 423 (608)
Q Consensus 349 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~ 423 (608)
|..+|+.+............... .++.++.++.++.+..||..+|+.+..+......+ .+.... +..++.+.
T Consensus 121 d~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~ 197 (377)
T TIGR03300 121 DAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGF 197 (377)
T ss_pred ECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEEC
Confidence 99999998876543221111112 23367777889999999999999887765432211 111122 24677888
Q ss_pred CCCcEEEEECCCCceecccceeeeeccCCCCccc---e-EEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCC
Q 007306 424 ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI---V-NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD 498 (608)
Q Consensus 424 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---v-~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~ 498 (608)
.++.+..+|.++++......+. ...+... ... + .+..+. +..+++ +.++.++.||..+|+.+......
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~-~~~g~~~-~~~~~~~~~~p~~~--~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--- 270 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVA-LPKGRTE-LERLVDVDGDPVVD--GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--- 270 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccc-cCCCCCc-hhhhhccCCccEEE--CCEEEEEEcCCEEEEEECCCCcEEEeeccC---
Confidence 8999999999887643322211 0101000 000 0 011121 334554 68899999999999877665421
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEE
Q 007306 499 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 578 (608)
Q Consensus 499 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 578 (608)
. .... ..++..++.++.||.|+.+|..+|+.+...... + ..... .... .+..+++++.||.|+++
T Consensus 271 ~-~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-----~--~~~~s--sp~i---~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 271 S-YQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDEL-----K--YRQLT--APAV---VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred C-ccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEccccc-----c--CCccc--cCEE---ECCEEEEEeCCCEEEEE
Confidence 1 1112 235678888889999999999999877655211 1 11111 1111 24688899999999999
Q ss_pred eCCCCccccccCCC
Q 007306 579 EPLESEVEWGKLPF 592 (608)
Q Consensus 579 ~~~~~~~~~~~~~~ 592 (608)
|..+++..|.....
T Consensus 336 d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 336 SREDGSFVARLKTD 349 (377)
T ss_pred ECCCCCEEEEEEcC
Confidence 99999998876543
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.8e-10 Score=113.79 Aligned_cols=220 Identities=10% Similarity=0.034 Sum_probs=134.3
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-e--EE-EEeCCC--cEEEEeCCCCceEEEeeCccccEEEEEEeCCCC
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-L--FA-FGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN 417 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~--l~-~~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 417 (608)
.|.+.|...+.. +.+........+-.|+||| . ++ +...+| .|++.++.+++..... ...+.....+|+|||+
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCC
Confidence 466667654433 3444445556778999998 4 32 444443 6888899887644332 2344455689999999
Q ss_pred EEEEEcC-CC----cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCc--EEEEECCC-Cc
Q 007306 418 VLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ--IDVYEAPT-LN 487 (608)
Q Consensus 418 ~l~s~~~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~--i~iwd~~~-~~ 487 (608)
.|+..+. +| .+..|++..+.. ....+ +..+.. +.....+|+|||+.|+. + .++. |+++++.. +.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~--g~~~~-lt~~~~---~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAI--GKPRR-LLNEAF---GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCC--CcceE-eecCCC---CCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 8886553 22 344467665311 11112 222221 23457899999998887 4 3554 55555532 22
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 564 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 564 (608)
....+.. +...+....|||||++|+..+.+ ..|++||+.+++...... + .... ....|+| |++
T Consensus 318 ~~~~lt~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-------~--~~~~--~~p~wSp-DG~ 383 (428)
T PRK01029 318 SPRLLTK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-------S--PENK--ESPSWAI-DSL 383 (428)
T ss_pred ceEEecc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-------C--CCCc--cceEECC-CCC
Confidence 3333432 24566788999999999876553 479999999987643321 1 1122 3789999 788
Q ss_pred EEEEEeC---CCcEEEEeCCCCcc
Q 007306 565 RIALGLT---NGRVHVIEPLESEV 585 (608)
Q Consensus 565 ~las~s~---Dg~v~iW~~~~~~~ 585 (608)
+|+..+. .+.|.+|++.+++.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCE
Confidence 7775443 35688889887654
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=2.1e-10 Score=104.99 Aligned_cols=236 Identities=13% Similarity=0.164 Sum_probs=156.9
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
..-|-..-+.+.+.|.++|+|--.+ .++.-.-.. +....++++++++++...|+.|-.+|++.-+.+...-
T Consensus 31 ~l~~~e~gv~~~s~drtvrv~lkrd---s~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf---- 101 (404)
T KOG1409|consen 31 ILIPKEEGVISVSEDRTVRVWLKRD---SGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF---- 101 (404)
T ss_pred eeccCCCCeEEccccceeeeEEecc---ccccCchhh--hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh----
Confidence 4667777889999999999996543 222211000 1147799999999999999999999999876553221
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 373 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 373 (608)
+.....+... .|...|..+-|+ ...+++++ |..+.---.+.+..+..+.-... .+++.+.-
T Consensus 102 -------------nkm~~~r~~~--~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-~t~~~~d~ 165 (404)
T KOG1409|consen 102 -------------NKMTFLKDYL--AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-ASALQFDA 165 (404)
T ss_pred -------------hhcchhhhhh--hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc-CCCCceee
Confidence 1111111111 599999999999 77888888 77665544555544332220000 00000000
Q ss_pred CCeEEEEeCCCcEEEEeC--CCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC
Q 007306 374 QDLFAFGFDDSSILVHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 374 ~~~l~~~~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
. +...|...|.|.+..+ ..-..+.++.+|.+.+.+++|.|....|.+|..|..+.+||+-..+. +.-...+|
T Consensus 166 ~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~~el~gh 239 (404)
T KOG1409|consen 166 L-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TAYELQGH 239 (404)
T ss_pred E-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----eeeeeccc
Confidence 0 3345555666655443 34467788999999999999999999999999999999999976332 22134466
Q ss_pred CCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC
Q 007306 452 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 486 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~ 486 (608)
. ..|..+..-+.-+.+.+ +.||.|.+|+++..
T Consensus 240 ~---~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 240 N---DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred h---hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 6 57777777777777777 69999999998643
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.6e-08 Score=94.12 Aligned_cols=249 Identities=14% Similarity=0.130 Sum_probs=164.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C---CcEEEEEcCC--Cceee--EecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEE
Q 007306 322 DPKDSISCFALR--GSHLFSAS-G---GKISIFSLET--FQTLA--TFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 389 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d---~~i~vwd~~~--~~~~~--~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vw 389 (608)
......+-++|+ ++.|.++. + |.|..|.++. |+... .......+.+.++++++| +++++. ..|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 366778889999 66788876 4 6777777764 44322 122223344789999999 666554 56799999
Q ss_pred eCCC-CceE---EEeeCcccc----------EEEEEEeCCCCEEEEEcC-CCcEEEEECCCCceecccceeeeeccCCCC
Q 007306 390 CPCT-KKTK---AKLKGHQNR----------ITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 390 d~~~-~~~~---~~~~~~~~~----------v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 454 (608)
-++. |... ..+ .|.+. +....+.|++++|++.+. -..|.+|++..+......... +..|
T Consensus 117 p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-v~~G---- 190 (346)
T COG2706 117 PLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-VKPG---- 190 (346)
T ss_pred EcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc-cCCC----
Confidence 8865 4322 222 24444 788999999999888764 357899999976544433333 3333
Q ss_pred ccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCC--c--eeeeecCC--C--CCCCeEEEEEecCCCEEEEEEc-CCeEE
Q 007306 455 TTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTL--N--HTSQLVPD--K--MDLPITYATYSCDGKCIYVSCK-SGHVK 523 (608)
Q Consensus 455 ~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~--~--~~~~~~~~--~--~~~~v~~~~~s~~~~~l~sg~~-dg~i~ 523 (608)
..-+.|.|+|++++..+ + -+++|.+|..... + .++++..- + .......+.+++||++|+++.. ...|.
T Consensus 191 -~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 191 -AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred -CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 46789999999999988 5 7899999998763 2 22222110 0 1556778889999999998765 35788
Q ss_pred EEeCCCC-ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCcc
Q 007306 524 VFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLESEV 585 (608)
Q Consensus 524 iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~v~iW~~~~~~~ 585 (608)
+|.+... ..+...... + ..........++| ++++|+.+..| ..|.++.+.....
T Consensus 270 ~f~V~~~~g~L~~~~~~---~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 270 VFSVDPDGGKLELVGIT---P----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred EEEEcCCCCEEEEEEEe---c----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCc
Confidence 8887643 222222211 1 2223344889999 78888888855 4788887765443
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=9.6e-10 Score=113.48 Aligned_cols=227 Identities=14% Similarity=0.120 Sum_probs=141.5
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC---CcEEEEecCCCcceeeecccceeeEEee
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKWQSNKQSLEEENVNMESQLYQ 308 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (608)
..|.++|..+ .....+ .. +...+...+|||||++|+.++.+ ..|.+|++.++..
T Consensus 170 ~~l~~~d~~g----~~~~~l--~~--~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--------------- 226 (417)
T TIGR02800 170 YELQVADYDG----ANPQTI--TR--SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--------------- 226 (417)
T ss_pred ceEEEEcCCC----CCCEEe--ec--CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------
Confidence 3577777753 222322 12 56679999999999999987754 3676666654432
Q ss_pred CCCCeeeeccccCCCCCCeEEEEEe--CCEEEE-Ee-CC--cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEe
Q 007306 309 PSSKLVMTNDIAADPKDSISCFALR--GSHLFS-AS-GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF 381 (608)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s-~~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 381 (608)
.... .+...+.+++|+ ++.|+. .+ ++ .|.+||+.++... .+..+........|+||| .|+..+
T Consensus 227 ------~~~~---~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 227 ------EKVA---SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred ------EEee---cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEE
Confidence 1111 244556678898 666654 44 44 5888999877543 333444445577899999 776555
Q ss_pred C-CC--cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC---cEEEEECCCCceecccceeeeeccCCCCc
Q 007306 382 D-DS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPET 455 (608)
Q Consensus 382 ~-d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 455 (608)
. ++ .|+++|+.+++.. .+..+...+..+.|+|+|++++.++.++ .|.+||+.++.. .. +...
T Consensus 297 ~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~---l~~~----- 364 (417)
T TIGR02800 297 DRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RV---LTDT----- 364 (417)
T ss_pred CCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EE---ccCC-----
Confidence 4 33 6888898877643 3443455677889999999999888775 788999887331 11 1111
Q ss_pred cceEEEEEcCCCCEEEE-EeCC---cEEEEECCCCceeeeecCCCCCCCeEEEEE
Q 007306 456 TIVNHIQFHPDQIHLLS-IHEG---QIDVYEAPTLNHTSQLVPDKMDLPITYATY 506 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~-~~d~---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 506 (608)
.......|+|+|++|+. +.++ .+++.+. ++.....+..+ .+.+..++|
T Consensus 365 ~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~--~g~~~~~~w 416 (417)
T TIGR02800 365 GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLPLG--NGDVREPAW 416 (417)
T ss_pred CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECCCC--CCCcCCCCC
Confidence 12345689999998887 4332 4666665 45555555332 334444444
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=5.7e-10 Score=100.09 Aligned_cols=270 Identities=14% Similarity=0.070 Sum_probs=165.5
Q ss_pred CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee---CCC-EEEEEeCCCcEEEEecCCCcceeeecccceeeEE
Q 007306 231 LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---SGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 306 (608)
Q Consensus 231 d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp---~g~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 306 (608)
.|.+.++++.+.+..+ ...+.- ..++.+..|.|.. +|. .|+-+-..|.|.++........ ..
T Consensus 45 ~Gkl~Lys~~d~~~~~-l~~~q~---~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----------~~ 110 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP-LDTLQC---TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----------VH 110 (339)
T ss_pred ccceEEEeecccccCc-cceeee---ecccccceeeeeeccCCccceeeeccccceEEEEeeccceee----------ee
Confidence 4678888887655443 111111 1356777788874 455 4555666788888765332210 01
Q ss_pred eeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcee--eEecCCCCCeEEEEEcCCC--eEEE
Q 007306 307 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL--ATFANPPPIATYFILLPQD--LFAF 379 (608)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~--~l~~ 379 (608)
...-+...+ ......++.|+ +..++++. +|.+.+-+....... +..+.|.-+.+...|+... .+.+
T Consensus 111 L~~ls~~ki-------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 111 LRGLSSKKI-------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred ecccchhhh-------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEe
Confidence 111111000 00113356666 66677776 898886665544443 4788999999999998777 8999
Q ss_pred EeCCCcEEEEeCC-CCceEEE-eeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCcc
Q 007306 380 GFDDSSILVHCPC-TKKTKAK-LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 456 (608)
Q Consensus 380 ~~~d~~i~vwd~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 456 (608)
|++|+.+..||++ .++.+.. -+-|...|.++.-+| .+.++++|+.|-.|++||.++. .+++.....+ +
T Consensus 184 GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm----~kPl~~~~v~-----G 254 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM----GKPLFKAKVG-----G 254 (339)
T ss_pred cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc----cCccccCccc-----c
Confidence 9999999999999 4444433 455888999998877 5789999999999999999862 2344311111 7
Q ss_pred ceEEEEEcCCC--CEEEEEeCCcEEEEECCCCcee---eeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEE-EEeCCC
Q 007306 457 IVNHIQFHPDQ--IHLLSIHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVK-VFDTST 529 (608)
Q Consensus 457 ~v~~v~~sp~~--~~l~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~-iwd~~~ 529 (608)
.|..+..+|.- +.++++.-+..+|-+...+..- .......|..-++.-.|.....+|++++ .|..++ +|-.-+
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 89999999964 3444465555666666543221 1111112445555555544445677754 355544 665444
Q ss_pred C
Q 007306 530 L 530 (608)
Q Consensus 530 ~ 530 (608)
+
T Consensus 335 ~ 335 (339)
T KOG0280|consen 335 G 335 (339)
T ss_pred C
Confidence 4
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=6.2e-09 Score=99.43 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=129.7
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCC-cEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-SILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
|++++..+.|...+.+...+-.++. ++.+.|.-..+..++ -++.|..|| .+-|+|.++++.. .+...-+.|.++.
T Consensus 332 Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~ 408 (668)
T COG4946 332 GDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVK 408 (668)
T ss_pred CcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEE
Confidence 8999999999999888776655543 567778888888888 899999999 8999999987654 4555677899999
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-----eCCcEEEEECCCC
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-----HEGQIDVYEAPTL 486 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-----~d~~i~iwd~~~~ 486 (608)
.+|+|++++.+.....+.+.|+.++... . +..... +-|+.+.|+|+++++|-+ ....|+++|+.++
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~---~---idkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVR---L---IDKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCee---E---eccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 9999999999999999999999996421 1 222223 679999999999999975 3357999999887
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 007306 487 NHTSQLVPDKMDLPITYATYSCDGKCIYVS 516 (608)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg 516 (608)
+....... ...=.+-+|.||+++|.--
T Consensus 480 Kiy~vTT~---ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 480 KIYDVTTP---TAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eEEEecCC---cccccCcccCCCCcEEEEE
Confidence 76654433 3444556777888776543
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=3.6e-10 Score=112.72 Aligned_cols=296 Identities=11% Similarity=0.128 Sum_probs=189.0
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
.....|++|+....|+|.||.||.+++-.+.+........+.+ .+. .+.-....+||+..|.-+.|+ .+.
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~gla------a~s--nLsmNQtLeGH~~sV~vvTWNe~~QK 85 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLA------AAS--NLSMNQTLEGHNASVMVVTWNENNQK 85 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccc------ccc--ccchhhhhccCcceEEEEEecccccc
Confidence 5678899999999999999999999999887665422211100 000 111112233899999999999 556
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE-EEeeCccccEEEEE
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLA 411 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~ 411 (608)
|-+.. +|.|.||-+-.|.-...+. .....|.+++|+.|| .|.....||.|.+=.++..+.- +.+++ .....+.
T Consensus 86 LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 86 LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 66666 8999999998776554443 234567899999999 9999999999988777654332 23333 2244688
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceec--ccceeeeeccCCCCccceEEEEEc--------CCCCEEEEE-eCCcEEE
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLC--SKFLHSFQTGLVPETTIVNHIQFH--------PDQIHLLSI-HEGQIDV 480 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~v~~v~~s--------p~~~~l~~~-~d~~i~i 480 (608)
|++|.+.+..+-.+|.+.+||....-..+ ..+.-+...+.......|..+.|. |+...++++ .+|.+.|
T Consensus 164 ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 164 WSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred ecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 99999998888899999999986531110 111010111100000234455553 577788887 6677777
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---------CeEEEEeCCCCceeEEEeceeeccCCCccccc
Q 007306 481 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 551 (608)
..-.+......+.. .-.+..+.|+++|..|+.++.| +.|.+|.. -|+...++... +..
T Consensus 244 MR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvp--------g~~- 310 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVP--------GSC- 310 (1189)
T ss_pred hhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecC--------Cce-
Confidence 66544333223322 4678899999999999998865 24444443 34555555432 222
Q ss_pred ccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 552 YPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 552 ~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
+++++|-. .|-.+|.+ .|+.|.+=++
T Consensus 311 -It~lsWEg-~gLriA~A-vdsfiyfanI 336 (1189)
T KOG2041|consen 311 -ITGLSWEG-TGLRIAIA-VDSFIYFANI 336 (1189)
T ss_pred -eeeeEEcC-CceEEEEE-ecceEEEEee
Confidence 44888876 45555554 4556655444
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=7.8e-11 Score=122.69 Aligned_cols=184 Identities=14% Similarity=0.113 Sum_probs=147.2
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCe----EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA----TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 407 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v----~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 407 (608)
...++.+. ++.+.+||...+.....+....... .-+..+++. ++++|+.-+.|.+|+....+.-..+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 66777777 9999999998877776665433221 122346666 99999999999999987444444688999999
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC
Q 007306 408 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 486 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~ 486 (608)
.++.|+.||+++++.|+|.++++|++.+.+... -.--+|. ..+..++|.|+ .+++ +.|.+.++|+. .+
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~~-~~ 247 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWGV-NG 247 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC-----ccccccc---ceeEEEEeccc--eeEEeccceEEEEEec-cc
Confidence 999999999999999999999999999955322 1334677 79999999998 6666 79999999987 45
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 487 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
..+..+..+ ....++.++..++...+++++.|+.+++|++..
T Consensus 248 ~~l~~y~~h-~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 248 TQLEVYDEH-SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceehhhhhh-hhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 656666653 378899999999999999999999999999865
No 263
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.7e-09 Score=110.48 Aligned_cols=218 Identities=14% Similarity=0.076 Sum_probs=130.6
Q ss_pred CCCcEEEEEEeeCCCEE---EEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-
Q 007306 258 FGGRVVRLIYSHSGDFL---VALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l---~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s- 333 (608)
....+..-+|||||+.+ ++...+|.-.|| +.+..+|...+.. ...+.....+|+
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~-------------------~~~l~~g~~~~lt---~~~g~~~~p~wSP 240 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIF-------------------LGSLENPAGKKIL---ALQGNQLMPTFSP 240 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEE-------------------EEECCCCCceEee---cCCCCccceEECC
Confidence 35566788999999752 234445544444 3344444322221 133344567899
Q ss_pred -CCEEEEEe--CC--c--EEEEEcCCC---ceeeEecCCCCCeEEEEEcCCC-eEEEEe-CCCc--EEEEeCCC-CceEE
Q 007306 334 -GSHLFSAS--GG--K--ISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGF-DDSS--ILVHCPCT-KKTKA 398 (608)
Q Consensus 334 -~~~l~s~~--d~--~--i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~--i~vwd~~~-~~~~~ 398 (608)
|+.|+..+ +| . +..|++..+ +..+............+|+||| .|+..+ .+|. |+++++.. +....
T Consensus 241 DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 241 RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 77777665 33 3 344676653 3333333333344678999999 666555 4564 44445542 23344
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCC---CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 474 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~ 474 (608)
.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.. . +..+ . ..+....|+|||+.|+. +.
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~---~---Lt~~-~---~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY---Q---LTTS-P---ENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE---E---ccCC-C---CCccceEECCCCCEEEEEEC
Confidence 454445567788999999998876543 46999999885421 1 2222 1 24567899999998886 32
Q ss_pred ---CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 007306 475 ---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 510 (608)
Q Consensus 475 ---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 510 (608)
...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 391 ~~g~~~L~~vdl~~g~~~~Lt~---~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 391 NSNESELYLISLITKKTRKIVI---GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCceEEEEECCCCCEEEeec---CCCcccCceecCCC
Confidence 3569999998776543332 24556678888754
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.3e-09 Score=110.38 Aligned_cols=198 Identities=16% Similarity=0.080 Sum_probs=126.4
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CC--cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCCc--EEEEeCC
Q 007306 323 PKDSISCFALR--GSHLFSAS--GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSS--ILVHCPC 392 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~--d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~--i~vwd~~ 392 (608)
+...+.+..|+ |+.|+..+ ++ .|.+||+.+++.... ....+......|+||| .|+ +.+.++. |+++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 56678889999 77777765 33 588899988765332 2223334478999999 665 4556664 8888998
Q ss_pred CCceEEEeeCccccEEEEEEeCCCCEEEEEcC-CC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCE
Q 007306 393 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 393 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
+++.. .+..+.......+|+|||+.++..+. ++ .|.++|+.+++. ..+. ..+. .....+|+|||++
T Consensus 295 tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt--~~g~-----~~~~~~~SpDG~~ 363 (448)
T PRK04792 295 TKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLT--FEGE-----QNLGGSITPDGRS 363 (448)
T ss_pred CCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEe--cCCC-----CCcCeeECCCCCE
Confidence 77654 34445555677899999998876553 34 466667766432 1111 1222 2345789999999
Q ss_pred EEE-Ee-CC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEeCCCCceeEEEe
Q 007306 470 LLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQIN 537 (608)
Q Consensus 470 l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~ 537 (608)
++. +. ++ .|.++|+.+++.. .+... .......|+|||++|+..+.+ | .+++++.+ |.....+.
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~ 433 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLP 433 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECc
Confidence 887 43 33 4666788777643 33221 122245799999998876654 3 47777874 55455443
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2.2e-09 Score=110.91 Aligned_cols=192 Identities=13% Similarity=0.081 Sum_probs=127.7
Q ss_pred CCCCeEEEEEe--CCEEEEEe-C---CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCC--cEEEEeCC
Q 007306 323 PKDSISCFALR--GSHLFSAS-G---GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDS--SILVHCPC 392 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~--~i~vwd~~ 392 (608)
+...+....|+ |+.|+..+ + ..|.+||+.+++... +....+.+....|+||| .|+ +...++ .|++||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 66778899999 78887766 3 368999998886543 33333445578999999 665 444455 68889999
Q ss_pred CCceEEEeeCccccEEEEEEeCCCCEEEEEcC-CC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCE
Q 007306 393 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 393 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
+++.. .+..+........|+|||+.++..+. ++ .|+++|+.+++.. .+. ..+ .......|+|+|+.
T Consensus 276 ~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~---~lt--~~~-----~~~~~~~~Spdg~~ 344 (430)
T PRK00178 276 SRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE---RVT--FVG-----NYNARPRLSADGKT 344 (430)
T ss_pred CCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE---Eee--cCC-----CCccceEECCCCCE
Confidence 87654 34445555667889999998776653 33 5777787764421 111 112 12345789999999
Q ss_pred EEE-Ee-CC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEeCCCC
Q 007306 470 LLS-IH-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 530 (608)
Q Consensus 470 l~~-~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~ 530 (608)
++. +. ++ .|.+||+.+++. ..+... .......|+|||++++..+.+ ..|+++++..+
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSV-RILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCE-EEccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 987 32 33 588999988764 333321 122356899999999877654 35777777543
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=2.3e-09 Score=96.30 Aligned_cols=247 Identities=14% Similarity=0.055 Sum_probs=161.6
Q ss_pred CCCCeEEEEEe-----CC-EEEEEe-CCcEEEEEcCCCceeeEecCCC------CCeEEEEEcCCC-eEEEEeCCCcEEE
Q 007306 323 PKDSISCFALR-----GS-HLFSAS-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDDSSILV 388 (608)
Q Consensus 323 ~~~~v~~v~~s-----~~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~-~l~~~~~d~~i~v 388 (608)
..+.+..+.|. +. .++-+. +|.|.++..........+++-. ....++.|++.+ .++++-.+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 34556777777 33 344444 7999999876544444444322 123578899999 9999999999996
Q ss_pred EeCCCCceE--EEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC
Q 007306 389 HCPCTKKTK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 465 (608)
Q Consensus 389 wd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 465 (608)
-+....... +.++.|........|+. +.+.+.+|+.|+.+..||++... ..+.+...-|. ..|.+|.-+|
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~----~~i~~n~kvH~---~GV~SI~ss~ 220 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK----TFIWHNSKVHT---SGVVSIYSSP 220 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc----ceeeecceeee---cceEEEecCC
Confidence 665555444 47889999999999876 45788999999999999999432 22222333455 6899998886
Q ss_pred C-CCEEEEE-eCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCCCceeEEEeceee
Q 007306 466 D-QIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAY 541 (608)
Q Consensus 466 ~-~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 541 (608)
. +.++++| .|..|++||.++ ++++..-.. .+.|+.+.++|.-. .++.++.-+-.+|-+...+....... ..
T Consensus 221 ~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v---~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~--~~ 295 (339)
T KOG0280|consen 221 PKPTYIATGSYDECIRVLDTRNMGKPLFKAKV---GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIV--LP 295 (339)
T ss_pred CCCceEEEeccccceeeeehhcccCccccCcc---ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhee--ee
Confidence 5 6788885 899999999984 566554432 68899999998543 23333344446677766554331111 11
Q ss_pred ccCCCcccccccEEEEEecCCCCEEEEEe-CCCcEE-EEeCCCCcc
Q 007306 542 AQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVH-VIEPLESEV 585 (608)
Q Consensus 542 ~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~-iW~~~~~~~ 585 (608)
.-.+| .+-.| .-.|.. ....||||+ .|..++ +|-.-++++
T Consensus 296 s~~~h-dSl~Y--G~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 296 SDKIH-DSLCY--GGDWDS-KDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred ccccc-cceee--cccccc-ccceeeeeeccccceeeeeeeccCCc
Confidence 11133 22222 445544 246799987 777755 888777654
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=1.4e-08 Score=111.91 Aligned_cols=334 Identities=13% Similarity=0.108 Sum_probs=189.6
Q ss_pred CCceeEeecCCCCeEEEeecCCeEEEe----eccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEE
Q 007306 211 NQSRESTSLPDADSAVCAKSLEKSVNL----KLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 286 (608)
Q Consensus 211 ~~~~~~~~s~dg~~l~~~~~d~~i~iW----d~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw 286 (608)
...+.+.+.+|...++.+..+|.|.+. +... ..-++... -...|.+++||||+..|+..+.++++.+-
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~------vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGS------VDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEE------EcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 344556799999999999999999998 4432 11222221 37799999999999999999999988765
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEeCCcE--E-EEEcCCC-ceeeEecC
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKI--S-IFSLETF-QTLATFAN 361 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~d~~i--~-vwd~~~~-~~~~~~~~ 361 (608)
.. -|++-....+..... +....| .|-|- ...=+=|+.|.- + .-+.... .....+.
T Consensus 148 t~-----------------~fd~i~E~~l~~~~~-~~~~~V-sVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s- 207 (928)
T PF04762_consen 148 TR-----------------DFDPISEVPLDSDDF-GESKHV-SVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS- 207 (928)
T ss_pred ec-----------------cceEEEEeecCcccc-CCCcee-eeccCcccCccCcchhhhhhhhccCCCCCccccCccc-
Confidence 32 122111111100000 111111 22222 000011110000 0 0000000 0001112
Q ss_pred CCCCeEEEEEcCCC-eEEEEeC---C---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC---CCcEEEE
Q 007306 362 PPPIATYFILLPQD-LFAFGFD---D---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVW 431 (608)
Q Consensus 362 ~~~~v~~~~~~~~~-~l~~~~~---d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~vw 431 (608)
....-..++|..|| ++|+.+. . +.++||+.. |....+-..-.+--.+++|.|.|+++|+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 33344589999999 8888774 2 579999965 6655544434444557899999999998764 3456666
Q ss_pred ECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecC
Q 007306 432 DAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCD 509 (608)
Q Consensus 432 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~ 509 (608)
.-+. -+.....+. . .... ..|..+.|++|+..|++.....|.+|-..+.. ..+.+.... ...+..+.|+|.
T Consensus 287 ErNG-LrhgeF~l~-~-~~~~---~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe 359 (928)
T PF04762_consen 287 ERNG-LRHGEFTLR-F-DPEE---EKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPE 359 (928)
T ss_pred ecCC-cEeeeEecC-C-CCCC---ceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccC-CCCCCceEECCC
Confidence 6443 222222232 1 1122 57999999999999999655559999987765 233343322 344555999985
Q ss_pred C-CEEEEEEcCCeEEEEeC----CCCc--------eeEEEecee---------eccCC--C----cccccccEEEEEecC
Q 007306 510 G-KCIYVSCKSGHVKVFDT----STLE--------LRCQINLTA---------YAQPG--T----ISLELYPLVIAAHPL 561 (608)
Q Consensus 510 ~-~~l~sg~~dg~i~iwd~----~~~~--------~~~~~~~~~---------~~~~g--~----~~~~v~~~~v~~sp~ 561 (608)
. ..|...+.+|.+..++. ..+. ....+.+.. .+|+- + -... +.+++|++
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~--v~~vaf~~- 436 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSP--VNDVAFSP- 436 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCC--cEEEEEeC-
Confidence 4 45666666666655443 2221 111111100 00000 0 1122 56999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC
Q 007306 562 EPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 562 d~~~las~s~Dg~v~iW~~~~~ 583 (608)
++..+|+...||.|.+|.....
T Consensus 437 ~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 437 SNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCeEEEEECCCCEEEEEecCC
Confidence 6777999999999999997654
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.23 E-value=2e-07 Score=89.38 Aligned_cols=168 Identities=13% Similarity=0.064 Sum_probs=116.6
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC-cEEEEECCCCceecccceeeeeccCCCC
Q 007306 376 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 454 (608)
+++..+ -|...+.+...+-.++. ++...|.-..+.-+++-++.|..|| .+-++|.++++... +. ..-
T Consensus 334 ~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr------~e-~~l-- 401 (668)
T COG4946 334 YIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR------IE-KDL-- 401 (668)
T ss_pred EEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE------ee-CCc--
Confidence 444444 24455555444433332 3566677777777777889999998 89999999854211 12 222
Q ss_pred ccceEEEEEcCCCCEEEEEe-CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC----eEEEEeCCC
Q 007306 455 TTIVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG----HVKVFDTST 529 (608)
Q Consensus 455 ~~~v~~v~~sp~~~~l~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg----~i~iwd~~~ 529 (608)
+.|.++..+|+|++++++. ...|.+.|+.+|+....-. ...+-|+.++|+|+++++|-+--+| .|+++|+.+
T Consensus 402 -g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 402 -GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred -cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 5799999999999999974 4689999999988633222 2367899999999999999877665 689999999
Q ss_pred CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 530 LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 530 ~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
++....-++. + .-+ +-+|.| |+++|.--+
T Consensus 479 ~Kiy~vTT~t-----a----~Df--sPaFD~-d~ryLYfLs 507 (668)
T COG4946 479 GKIYDVTTPT-----A----YDF--SPAFDP-DGRYLYFLS 507 (668)
T ss_pred CeEEEecCCc-----c----ccc--CcccCC-CCcEEEEEe
Confidence 8866654432 1 122 567777 677665444
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=1.2e-08 Score=98.54 Aligned_cols=277 Identities=12% Similarity=0.086 Sum_probs=174.1
Q ss_pred CCCceeEeecCCCCeEEEeecCC---------------eEEEeeccCCCCCCceeeEeecCCCCCCcEE-EEEEeeCCCE
Q 007306 210 NNQSRESTSLPDADSAVCAKSLE---------------KSVNLKLQLINEPSECRTLLLPDNSFGGRVV-RLIYSHSGDF 273 (608)
Q Consensus 210 ~~~~~~~~~s~dg~~l~~~~~d~---------------~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~-~~~fsp~g~~ 273 (608)
+.......|||.+++|++=+..+ .+.+||..+ +.+. ..++......-.| -+.|+-+.+|
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s----g~iv-~sf~~~~q~~~~Wp~~k~s~~D~y 145 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS----GMIV-FSFNGISQPYLGWPVLKFSIDDKY 145 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC----ceeE-eeccccCCcccccceeeeeecchh
Confidence 33334457999999999866543 489999974 3333 2233311222366 7889999988
Q ss_pred EEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-C---CEEEEE-----e-CC
Q 007306 274 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G---SHLFSA-----S-GG 343 (608)
Q Consensus 274 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~---~~l~s~-----~-d~ 343 (608)
+|-. ....+.|+++ ++.. ....+..-....|....|+ + ..|+.- + ++
T Consensus 146 ~ARv-v~~sl~i~e~-t~n~---------------------~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa 202 (561)
T COG5354 146 VARV-VGSSLYIHEI-TDNI---------------------EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPA 202 (561)
T ss_pred hhhh-ccCeEEEEec-CCcc---------------------ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCc
Confidence 7765 3456777765 2221 1100000012446666666 1 233332 2 57
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEE----e-------CCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----F-------DDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~----~-------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
++++|.+..+..+.+-.-....-..+.|.+.| .++.- . ....++++++.... +.....-.++|...+
T Consensus 203 ~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~ 281 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFT 281 (561)
T ss_pred EEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeee
Confidence 89999998766655443222222367888888 43321 1 12468888887433 333335678999999
Q ss_pred EeCCCCEEEE--EcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee---CCcEEEEECCC
Q 007306 412 YSLSLNVLVS--SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVYEAPT 485 (608)
Q Consensus 412 ~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~---d~~i~iwd~~~ 485 (608)
|.|.++.+++ |-.+-.+.++|++. ......+. ..=+.+.|+|.+++++. |- .|.+-+||...
T Consensus 282 W~p~S~~F~vi~g~~pa~~s~~~lr~------Nl~~~~Pe------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 282 WEPLSSRFAVISGYMPASVSVFDLRG------NLRFYFPE------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ecccCCceeEEecccccceeeccccc------ceEEecCC------cccccccccCcccEEEEecCCccccceEEeccCC
Confidence 9998877554 45788999999988 22221232 23457889999999998 53 47899999865
Q ss_pred Cceee-eecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEeCCCCc
Q 007306 486 LNHTS-QLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTSTLE 531 (608)
Q Consensus 486 ~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~sg~~------dg~i~iwd~~~~~ 531 (608)
...+. .+. .....-+.|+||++++.+... |+.|.|||+....
T Consensus 350 rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 350 RFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 44433 443 334556789999999987653 7889999997544
No 270
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=6e-08 Score=94.16 Aligned_cols=226 Identities=12% Similarity=0.002 Sum_probs=140.3
Q ss_pred CCcEEEEEcCCCceeeEecCCCC-------CeEEEEEcCCC-eEEEEe-C-CCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 342 GGKISIFSLETFQTLATFANPPP-------IATYFILLPQD-LFAFGF-D-DSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~-~l~~~~-~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
+..|.+||+.+++.+..+..... ....++++||| .+++.. . +..|.+.|+.+++.+..+.-.. ...-..
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~ 154 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP 154 (352)
T ss_pred CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE
Confidence 47899999999999988874322 23478899999 777665 3 6899999999999988776421 112222
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccce-EEEEEcC-CCCEEEEEeCCcEEEEECCC----
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHP-DQIHLLSIHEGQIDVYEAPT---- 485 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~sp-~~~~l~~~~d~~i~iwd~~~---- 485 (608)
.+++..+ +-+.||......+...-........ ++.+.. .++ ..-.|.+ +|+++.++..|.|.+.|+..
T Consensus 155 t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~-vf~~~~---~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 155 TANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTE-VFHPED---EYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred ecCCccE--EEeecCceEEEEecCCCceEEeeee-eecCCc---cccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 2222222 2233454444333221111111111 111100 000 0014455 89999998779999999543
Q ss_pred -CceeeeecCC-----CCCCCeEEEEEecCCCEEEEEE----------cCCeEEEEeCCCCceeEEEeceeeccCCCccc
Q 007306 486 -LNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC----------KSGHVKVFDTSTLELRCQINLTAYAQPGTISL 549 (608)
Q Consensus 486 -~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~sg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~ 549 (608)
......+... -..+.+.-++++++++.++... ..+.|.++|..+++.+..+.. +.
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---------G~ 299 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---------GH 299 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---------CC
Confidence 3333332211 0133444599999999888743 125899999999999988864 22
Q ss_pred ccccEEEEEecCCCC-EEEEEe-CCCcEEEEeCCCCccc
Q 007306 550 ELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 586 (608)
Q Consensus 550 ~v~~~~v~~sp~d~~-~las~s-~Dg~v~iW~~~~~~~~ 586 (608)
..+ .++++| |+. +|.+.+ .++.|.+.|..+++..
T Consensus 300 ~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 300 EID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred cee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 344 899999 677 776665 6788999999988753
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=1.4e-10 Score=126.67 Aligned_cols=181 Identities=14% Similarity=0.190 Sum_probs=132.3
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEc---CCCcEEEEECCCCcee
Q 007306 364 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKL 439 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~ 439 (608)
..|+.+.|+.+| .+..+..||.+.+|... .++....+.|........|-. ..+++++ .++.+.+||..-...
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~- 2327 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM- 2327 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-
Confidence 667788899999 99999999999999987 566677778888888888865 5566654 468999999765221
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
... +...|. +.++++++-|..+.+++ |.+|.|++||++..+.++++.. +. ...++++|+.
T Consensus 2328 -~s~---v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss 2388 (2439)
T KOG1064|consen 2328 -NSL---VHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSS 2388 (2439)
T ss_pred -cce---eeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCc
Confidence 112 225666 78999999999999999 5999999999988887777642 44 5678999999
Q ss_pred CCeEEEEeCCCCceeEEEeceeeccCCCcccccccE--EEEEecCCCCEEEEEeCCCc
Q 007306 519 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPL--VIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 519 dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~v~~sp~d~~~las~s~Dg~ 574 (608)
.|.|+||++....++..+.... .. .+-...+ .+-..+ .+.|.+|+.||+
T Consensus 2389 ~g~ikIw~~s~~~ll~~~p~e~-ak----~gfFr~~g~Q~~v~~--~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2389 EGNIKIWRLSEFGLLHTFPSEH-AK----QGFFRNIGMQINVGQ--CNRIFSCGADGT 2439 (2439)
T ss_pred ccceEEEEccccchhhcCchhh-cc----cchhhhcCceeeecc--CceEEEecCCCC
Confidence 9999999999888777765321 10 1101111 222223 567888888874
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.20 E-value=1e-09 Score=100.59 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=166.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEc-CCCceeeEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC---
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSL-ETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPC--- 392 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~-~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~--- 392 (608)
||.+.|++...- ..-+++.+ |.+++||-- +.++.-..+. .-+.+++++.+.++. .|++|-.+|++.-+.+.
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 677777766555 66788888 999999954 4455444443 335678899999999 99999999999988654
Q ss_pred -CCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE
Q 007306 393 -TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 393 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 471 (608)
.....+.+..|..++..+.|+-..+++++.+.|..+.---.+.+.......+.+ ..+++.+.-. +..
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~----------~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET----------PASALQFDAL--YAF 169 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec----------cCCCCceeeE--EEE
Confidence 334556667799999999999999999999999887554455544332222220 1111111111 333
Q ss_pred EE-eCCcEEEEECC--CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcc
Q 007306 472 SI-HEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 548 (608)
Q Consensus 472 ~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~ 548 (608)
.| ..|.|.+-.+. .-.++.++. +|.+.+++++|.+....|++|..|..+.+||+.-.+-+.-. +.|| .
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~--~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e------l~gh-~ 240 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFN--GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE------LQGH-N 240 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEc--CcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee------eccc-h
Confidence 34 45555554433 344556665 47999999999999999999999999999999765433322 2255 4
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 549 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 549 ~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
+.+. .+.+-+ --..+.+++.||.|.+|+..-.+
T Consensus 241 ~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 241 DKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhh--hhhhhh-hheeeeeccCCCeEEEEecccee
Confidence 4454 666666 46899999999999999987654
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=126.98 Aligned_cols=181 Identities=13% Similarity=0.178 Sum_probs=141.6
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.-+|-..+.+||+.||.|++|.... ...+..++- .| ...|+.+.|+.+|+.+..+..||.+.+|.......
T Consensus 2214 ~~sHp~~~~Yltgs~dgsv~~~~w~~---~~~v~~~rt--~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~-- 2285 (2439)
T KOG1064|consen 2214 MTSHPSDPYYLTGSQDGSVRMFEWGH---GQQVVCFRT--AG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPY-- 2285 (2439)
T ss_pred ecCCCCCceEEecCCCceEEEEeccC---CCeEEEeec--cC-cchhhhhhhcccCCceeeeccCCceeecccCCcce--
Confidence 45667888999999999999999875 333333332 22 48999999999999999999999999998752221
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe----CCcEEEEEcCCC-ceeeEecCCCCCeEEEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS----GGKISIFSLETF-QTLATFANPPPIATYFI 370 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~----d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~ 370 (608)
.-|. .|+.....+.|-+..+++++ ++.+.+||..-. ..-..-.+|.+++++++
T Consensus 2286 ---------~s~q-------------chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~ 2343 (2439)
T KOG1064|consen 2286 ---------TSWQ-------------CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLA 2343 (2439)
T ss_pred ---------eccc-------------cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEE
Confidence 1111 58888888888877777766 378999997432 11112278999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCC
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGW 436 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 436 (608)
+-|.. .|++|+.+|.|++||++..+.++.++. ++ ...++++|+..|.|+||++...
T Consensus 2344 ~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2344 YAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred EcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEcccc
Confidence 99999 999999999999999998887776664 34 4578999999999999999883
No 274
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=3.3e-11 Score=122.70 Aligned_cols=324 Identities=12% Similarity=0.063 Sum_probs=205.4
Q ss_pred hHHHHHHHHhhcceeeeeeecccCCCCCccccc-cCCceeeeccccccc----------cccCCCCCCcccc---cccCC
Q 007306 134 KSRLLSLIKQIMDWWVPYCINVMPNANNETISL-KDFPTVSNLRYASSI----------LTDKPNQEGRPLD---ASSGD 199 (608)
Q Consensus 134 ~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---~~~~~ 199 (608)
+--|.+++.|.++.|++.|++|+..+|++.+-. +.++-++....+..+ +.++.-+.+..++ +|+.-
T Consensus 1012 ~~sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRF 1091 (1516)
T KOG1832|consen 1012 RLSLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRF 1091 (1516)
T ss_pred CCcHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcchhhhhcccchhhcCcccccccCcccchhhHhhc
Confidence 345999999999999999999999998877766 444455555544111 1122222221111 11100
Q ss_pred cccccccccCCCCc-eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe
Q 007306 200 DSNDSSCFNDNNQS-RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT 278 (608)
Q Consensus 200 ~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s 278 (608)
. ..+ .|.++... ..+.|+.+.++|+.|+..|.|+++++..+...... .+|.++|+.+.-|.||..+++.+
T Consensus 1092 r-~w~-~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-------ncH~SavT~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1092 R-SWR-SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-------NCHQSAVTLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred c-cch-hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-------cccccccccccccCCcceeeeec
Confidence 0 011 23333332 34689999999999999999999999864332222 34999999999999999888776
Q ss_pred CCC--cEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC
Q 007306 279 QTA--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF 353 (608)
Q Consensus 279 ~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~ 353 (608)
.-. ...+|+..+- +... +.-..-.++.|+ -..-+.|. .....+||++++
T Consensus 1163 s~S~PlsaLW~~~s~--------------------~~~~------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------------GGPR------HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred cccCchHHHhccccc--------------------cCcc------ccccccceeehhhhHHHHHhcccccceEEEecccC
Confidence 632 3445554321 1111 112345678888 22233333 567889999999
Q ss_pred ceeeEecC----CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcE
Q 007306 354 QTLATFAN----PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQL 428 (608)
Q Consensus 354 ~~~~~~~~----~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 428 (608)
..+.++-. ....-++..|+|++ +++- || .+||++..+.++.|...+..+ .=.|+|+|..++.-+.
T Consensus 1217 ~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINSE---- 1286 (1516)
T KOG1832|consen 1217 SPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINSE---- 1286 (1516)
T ss_pred cHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeech----
Confidence 88777431 12233688999999 6654 44 689999888777776544222 2259999999988774
Q ss_pred EEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe---C---------------CcEEEEECCCCceee
Q 007306 429 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---E---------------GQIDVYEAPTLNHTS 490 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~---d---------------~~i~iwd~~~~~~~~ 490 (608)
+||+++ .+.+++++.- .-..+.|+..|..++... | ...+-+|......+.
T Consensus 1287 -IwD~RT-----F~lLh~VP~L------dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~ia 1354 (1516)
T KOG1832|consen 1287 -IWDMRT-----FKLLHSVPSL------DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIA 1354 (1516)
T ss_pred -hhhhHH-----HHHHhcCccc------cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccce
Confidence 999999 3444433332 234688998887766521 1 124555555566666
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
++.. ...+..+|-+|...+++.--
T Consensus 1355 Ti~v---~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1355 TIPV---DRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred eeec---ccchhhhhcCCccceEEEEe
Confidence 6644 56777888888888877643
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.8e-08 Score=100.88 Aligned_cols=278 Identities=9% Similarity=0.046 Sum_probs=184.8
Q ss_pred ceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCcee----------eEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCc
Q 007306 213 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECR----------TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 282 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~----------~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~ 282 (608)
...++|..+..+++.|+.||.+++-.+.+........ ..+| .||...|..+.|+.+.+.|-|...+|.
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL--eGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL--EGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhh--ccCcceEEEEEeccccccccccCCCce
Confidence 3445799999999999999999999876532211111 1224 359999999999999999999999999
Q ss_pred EEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEe
Q 007306 283 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF 359 (608)
Q Consensus 283 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~ 359 (608)
|.+|-+-.+.- .........++.|.+++|. |..++..- ||.|.|=.++.. .+..-
T Consensus 95 IiVWmlykgsW---------------------~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN-RIwgK 152 (1189)
T KOG2041|consen 95 IIVWMLYKGSW---------------------CEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN-RIWGK 152 (1189)
T ss_pred EEEEeeecccH---------------------HHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc-eecch
Confidence 99997644431 0001111356778899999 88888877 888877766532 22211
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-------eEE----EeeCccccEEEEEEe--------CCCCEE
Q 007306 360 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-------TKA----KLKGHQNRITCLAYS--------LSLNVL 419 (608)
Q Consensus 360 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~-------~~~----~~~~~~~~v~~~~~~--------~~~~~l 419 (608)
.-...-...+.|++|. .++.+-.+|.+.+||....- +.- .+......|..+.|. |+...|
T Consensus 153 eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 153 ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence 1111223477899999 88888889999999976431 111 111122345566663 467789
Q ss_pred EEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC---------CcEEEEECCCCcee
Q 007306 420 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE---------GQIDVYEAPTLNHT 489 (608)
Q Consensus 420 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d---------~~i~iwd~~~~~~~ 489 (608)
+.+..+|.+.+-.-.+.. .++- +..+ ..+..+.|+++|..|++ |.+ +.|.+|.. -|+.+
T Consensus 233 avcy~nGr~QiMR~eND~----~Pvv-~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~ 301 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDP----EPVV-VDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIV 301 (1189)
T ss_pred EEEEcCceehhhhhcCCC----CCeE-Eecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhhe
Confidence 999999988876554422 2222 2223 35889999999999998 432 24666665 57788
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
.+++.+ ...|++++|-..|-.++.+ .|+.|++=+++
T Consensus 302 gtlkvp--g~~It~lsWEg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 302 GTLKVP--GSCITGLSWEGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred EEEecC--CceeeeeEEcCCceEEEEE-ecceEEEEeec
Confidence 888765 6789999998777665554 34555544433
No 276
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.17 E-value=4e-08 Score=110.58 Aligned_cols=255 Identities=11% Similarity=0.036 Sum_probs=158.0
Q ss_pred EEEEEe--CC-EEEEEe-CCcEEEEEcCCCceeeEecC--C------------CCCeEEEEEcCCC-eEEEE-eCCCcEE
Q 007306 328 SCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFAN--P------------PPIATYFILLPQD-LFAFG-FDDSSIL 387 (608)
Q Consensus 328 ~~v~~s--~~-~l~s~~-d~~i~vwd~~~~~~~~~~~~--~------------~~~v~~~~~~~~~-~l~~~-~~d~~i~ 387 (608)
..++++ +. .+++-. ++.|++||.. +..+..+.+ . -.....+++++++ .|+++ ..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 356776 34 444444 7899999986 444444432 1 1134688999887 55544 4567899
Q ss_pred EEeCCCCceEEEeeCc-----------------cccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecc--cceeee
Q 007306 388 VHCPCTKKTKAKLKGH-----------------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF 447 (608)
Q Consensus 388 vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~ 447 (608)
++|+.++.. .++.+. -.....++++| ++..+++.+.++.|++||..++..... ......
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 999887643 333210 12346799999 566777778889999999877432100 000000
Q ss_pred eccCCC---CccceEEEEEcCCCCEEEE--EeCCcEEEEECCCCceeeee-----------cCCC--------CCCCeEE
Q 007306 448 QTGLVP---ETTIVNHIQFHPDQIHLLS--IHEGQIDVYEAPTLNHTSQL-----------VPDK--------MDLPITY 503 (608)
Q Consensus 448 ~~~~~~---~~~~v~~v~~sp~~~~l~~--~~d~~i~iwd~~~~~~~~~~-----------~~~~--------~~~~v~~ 503 (608)
..++.. .......|+++|+++.|++ +.++.|++||+.++...... .... .......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 001000 0024567999999986666 36789999999876532110 0000 0113468
Q ss_pred EEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEecee-eccCCC--cccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 504 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA-YAQPGT--ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 504 ~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~g~--~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
++++++|+.+++-+.++.|++||..++.......... ....|. ...--.+..+++++ +++++++-+.++.|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 8999999988888889999999999887553321100 000010 00111355899999 7899999999999999999
Q ss_pred CCCcc
Q 007306 581 LESEV 585 (608)
Q Consensus 581 ~~~~~ 585 (608)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 88753
No 277
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.16 E-value=1.2e-08 Score=90.52 Aligned_cols=240 Identities=8% Similarity=-0.034 Sum_probs=153.7
Q ss_pred EEEEee-----CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEE---EEeCC
Q 007306 264 RLIYSH-----SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF---ALRGS 335 (608)
Q Consensus 264 ~~~fsp-----~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v---~~s~~ 335 (608)
.|.|-| .-.+||.||..|...+|...+.+.... +.|. |...|.-+ +-+..
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~---------~cd~-------------snn~v~~~~r~cd~~~ 129 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY---------QCDV-------------SNNDVTLVKRYCDLKF 129 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccccee---------eecc-------------cccchhhhhhhccccc
Confidence 345555 334799999999999998876653111 2221 22222111 11122
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-c-eEE-EeeCccccEEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-K-TKA-KLKGHQNRITCL 410 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~-~~~-~~~~~~~~v~~~ 410 (608)
-+..++ |.++++.++.-+..........-.+.++++++|+ +.++.++...|..|.+... + ..+ ......+.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 344555 8888888886544333332222337889999999 9999999999999987653 2 223 223344555678
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC--EEEEE-eCCcEEEEECCCCc
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI--HLLSI-HEGQIDVYEAPTLN 487 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~--~l~~~-~d~~i~iwd~~~~~ 487 (608)
.|+.....+|++..||++.+||++.........-. ....|. +.++.+.|++.|. +|+.+ .-+.+.+.|+++++
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss-trp~hn---Ga~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS-TRPHHN---GAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcc-cCCCCC---CceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 89999999999999999999999874432222222 233455 8999999998763 34445 56789999999988
Q ss_pred eeeeecCCCC------CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 488 HTSQLVPDKM------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 488 ~~~~~~~~~~------~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
..+.+..... ...|....|+.++.-+.+.+++ .+.=|++.+.
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 7666554321 2447777888777766666543 2444555443
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.6e-08 Score=97.10 Aligned_cols=284 Identities=9% Similarity=0.085 Sum_probs=175.2
Q ss_pred cccCCCCceeEeecCCCCeEEEeecC-----------CeEEEeeccCCCCCCceeeEeecCCCCCCcEEE-EEEeeCCCE
Q 007306 206 CFNDNNQSRESTSLPDADSAVCAKSL-----------EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVR-LIYSHSGDF 273 (608)
Q Consensus 206 ~~~~~~~~~~~~~s~dg~~l~~~~~d-----------~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~-~~fsp~g~~ 273 (608)
.|.++ ...-+.|||..+||+|-+.. ..++|||+.++.....+.. .. ....+|. ..||.|++|
T Consensus 246 RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~---~~--~~~~~WP~frWS~DdKy 319 (698)
T KOG2314|consen 246 RFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV---IK--SPYLKWPIFRWSHDDKY 319 (698)
T ss_pred hccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec---cC--CCccccceEEeccCCce
Confidence 44433 33345899999999997632 4589999986432222222 11 1333443 679999999
Q ss_pred EEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe---C---CcE
Q 007306 274 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---G---GKI 345 (608)
Q Consensus 274 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~---d---~~i 345 (608)
+|.-.. .+|.|++..+-. ++|.++- .-..|....|+ ++.||--. + ..+
T Consensus 320 ~Arm~~-~sisIyEtpsf~-------------lld~Ksl----------ki~gIr~FswsP~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 320 FARMTG-NSISIYETPSFM-------------LLDKKSL----------KISGIRDFSWSPTSNLLAYWTPETNNIPARV 375 (698)
T ss_pred eEEecc-ceEEEEecCcee-------------eeccccc----------CCccccCcccCCCcceEEEEcccccCCcceE
Confidence 988766 567777654422 2332211 33567778888 66776544 1 367
Q ss_pred EEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEE----------eCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 346 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFG----------FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 346 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~----------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
.+..+.+++.+++-.-+.-.-..+.|-.+| +|+.- +.-..+-|+.++....--..-.-...|...+|-|
T Consensus 376 tL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP 455 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEP 455 (698)
T ss_pred EEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeecc
Confidence 788888888877766554433456677777 65532 1122455666655432222222456788999999
Q ss_pred CCCEEEEEcC---CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE----eCCcEEEEECCCCc
Q 007306 415 SLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLN 487 (608)
Q Consensus 415 ~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~----~d~~i~iwd~~~~~ 487 (608)
.|+.+++-+. ..++.+|.+.+... ....+..+.. ...+.+.|+|.|++++++ ..|.+..+|+.-..
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc------cccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 9988776554 35788998874111 1122332222 246789999999999872 47889999986433
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcC------CeEEEEeCC
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTS 528 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d------g~i~iwd~~ 528 (608)
+..+- ... ....+.+.|.|.|+|+++++.- .--+||+..
T Consensus 529 ~k~~~-~~e-h~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 529 LKDTA-SPE-HFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred hhhcc-Ccc-ccccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 32222 222 3456778999999999998763 334555554
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.8e-08 Score=99.79 Aligned_cols=209 Identities=10% Similarity=0.038 Sum_probs=129.2
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-e-EEEEeCC---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-L-FAFGFDD---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 418 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 418 (608)
.|.+-|.. |...+.+.... ......|+||| . ++..+.+ ..|+++|+.+++...... ..+......|+|||+.
T Consensus 170 ~l~~~d~d-g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYT-LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCC-CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 45555554 33333333333 67789999999 5 5544433 479999999887655443 4455667789999987
Q ss_pred EEEE-cCC--CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeC--C--cEEEEECCCCceeee
Q 007306 419 LVSS-GAD--AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE--G--QIDVYEAPTLNHTSQ 491 (608)
Q Consensus 419 l~s~-~~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d--~--~i~iwd~~~~~~~~~ 491 (608)
++.. +.+ ..|.++|+.+++. ..+. .. . .......|+|||+.|+..++ + .|+++|+.+++..+.
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~---~~LT---~~-~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTL---TQIT---NY-P---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcE---EEcc---cC-C---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 7644 333 5688888877432 1111 11 1 12235679999998887433 2 689999987776433
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcC---------CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKS---------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
... + . . ...|||||++|+..+.. ..|++.|+.++... .++.. + ... ...|+| |
T Consensus 317 t~~-g-~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~----~~~--~p~~SP-D 378 (419)
T PRK04043 317 VFH-G-K-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G----VNQ--FPRFSS-D 378 (419)
T ss_pred ccC-C-C-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C----CcC--CeEECC-C
Confidence 321 1 1 1 24899999998876543 37888899888643 33321 1 111 578999 7
Q ss_pred CCEEEEEeCC-C--cEEEEeCCCC
Q 007306 563 PNRIALGLTN-G--RVHVIEPLES 583 (608)
Q Consensus 563 ~~~las~s~D-g--~v~iW~~~~~ 583 (608)
|.+++..+.+ + .+.+.++...
T Consensus 379 G~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEccCCcEEEEEEecCCC
Confidence 8877776644 3 3556666443
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=2.4e-10 Score=110.63 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=177.1
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-C
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 334 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~ 334 (608)
.||+..|..++--.+.+-+++++.|.+|++|.++...- ...+..+.-+. . .|+.+|.++.|- +
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD--------------~~~tsaCQfTY-~-aHkk~i~~igfL~~ 795 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD--------------EIGTSACQFTY-Q-AHKKPIHDIGFLAD 795 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC--------------ccccceeeeEh-h-hccCcccceeeeec
Confidence 56999999998877778899999999999999865532 11112222111 1 599999999999 5
Q ss_pred CEEEEEeCCcEEEEEcCCCceeeEec--CCCCCeEEEEEcCC--C--eEEEEeCCCcEEEEeCCCCceEEEee-----Cc
Q 007306 335 SHLFSASGGKISIFSLETFQTLATFA--NPPPIATYFILLPQ--D--LFAFGFDDSSILVHCPCTKKTKAKLK-----GH 403 (608)
Q Consensus 335 ~~l~s~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~--~--~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~ 403 (608)
..-+..+||.|.+||.--|+.+..+. ...+.+..+..-++ . .++.++...+|+++|.+.++....++ +.
T Consensus 796 lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 796 LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 54444558999999998887766443 22233333444343 3 45555788999999999987776654 34
Q ss_pred cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec-ccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEE-
Q 007306 404 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC-SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDV- 480 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~i- 480 (608)
...+++++..+.|++++.+-.+|.|.+.|.+++..+. .++.. .....++ .|..+.++. ..|.++.+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-apsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-APSDQALAQSALDHSLAVN 944 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-CchhHHHHhhcccceeEee
Confidence 5678999999999999999999999999999965332 11111 1111222 355566665 47888888
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC----CceeEEEeceeeccCCCcccccccEEE
Q 007306 481 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST----LELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~----~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
|..-+|....+...+. .+..- ...-|.-+++....+.+.+|.-.. ...+..+.+..+ .| ..+++
T Consensus 945 Whaldgimh~q~kppp--epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f--~G------~lTal 1012 (1034)
T KOG4190|consen 945 WHALDGIMHLQDKPPP--EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEF--PG------TLTAL 1012 (1034)
T ss_pred ehhcCCeeeeccCCCC--cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhcccccccc--CC------cccee
Confidence 8876666544443321 11110 012355566666666677764221 111122222111 12 14477
Q ss_pred EEecCCCCEEEEEeCCCcEEE
Q 007306 557 AAHPLEPNRIALGLTNGRVHV 577 (608)
Q Consensus 557 ~~sp~d~~~las~s~Dg~v~i 577 (608)
+--|- ..-+..|...|.|++
T Consensus 1013 a~LPL-N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1013 APLPL-NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred eeccc-cchhhccCCCCceee
Confidence 77783 455666777777765
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=1e-07 Score=107.44 Aligned_cols=258 Identities=9% Similarity=-0.002 Sum_probs=157.1
Q ss_pred EEEEEeeC-CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEE
Q 007306 263 VRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFS 339 (608)
Q Consensus 263 ~~~~fsp~-g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s 339 (608)
..++++++ |..+++-+.++.|.+||.............. .....|..-. +.-.....+++. ++.|+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~-----~G~~dG~~~~-----a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE-----EGLRDGSFED-----ATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC-----cCCCCCchhc-----cccCCCcEEEEeCCCCEEEE
Confidence 46788875 5566666678889988875432200000000 0000011000 122335678887 666666
Q ss_pred Ee--CCcEEEEEcCCCceeeEecCC-----------------CCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEE
Q 007306 340 AS--GGKISIFSLETFQTLATFANP-----------------PPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 340 ~~--d~~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~-~-~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
+. ++.|+++|..++. +.++.+. -.....++++|+ + .+++.+.++.|++||..++...
T Consensus 641 aDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~- 718 (1057)
T PLN02919 641 ADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR- 718 (1057)
T ss_pred EeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-
Confidence 66 5789999987654 3333210 112357899994 5 6777778899999999876543
Q ss_pred EeeCc---------------cccEEEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecc---c-----ceeeeec--cCC
Q 007306 399 KLKGH---------------QNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCS---K-----FLHSFQT--GLV 452 (608)
Q Consensus 399 ~~~~~---------------~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~---~-----~~~~~~~--~~~ 452 (608)
.+.+. -.....++++|+++ .+++-+.++.|++||+.++..... . .+..+-. +..
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 22111 12356799999988 455666679999999987542100 0 0000000 000
Q ss_pred --CCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCC-----------CCCCCeEEEEEecCCCEEEEEEc
Q 007306 453 --PETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------KMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 453 --~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
........++++++|..+++ ..++.|++||..++........+ ..-.....++++++|+.+++-+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 00012458999999987777 57889999999877654322111 01235778999999998888889
Q ss_pred CCeEEEEeCCCCce
Q 007306 519 SGHVKVFDTSTLEL 532 (608)
Q Consensus 519 dg~i~iwd~~~~~~ 532 (608)
++.|++||+.+++.
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 99999999999875
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=2.3e-08 Score=88.73 Aligned_cols=242 Identities=10% Similarity=0.046 Sum_probs=157.3
Q ss_pred CCEEEEEe-CCcEEEEEcCCCcee-eEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
..+|+.|+ .|...+|...+.+.. +....+...|+-+.=..+. .+..++.|.++++.++..+.....+....-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34788887 899999999865433 3333444444322211222 6778888999999888765443333222233889
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 488 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 488 (608)
+++++|++++++.+....|..|.+..... ..+.+...... ..-.+..|+.....+|+ ..||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~se---y~~~~~~a~t~---D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESE---YIENIYEAPTS---DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccc---eeeeeEecccC---CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 99999999999999999999999876432 22221111111 34457889999888988 5999999999986543
Q ss_pred eee---ecCCCCCCCeEEEEEecCCC--EEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 489 TSQ---LVPDKMDLPITYATYSCDGK--CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 489 ~~~---~~~~~~~~~v~~~~~s~~~~--~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
... -..+.|.+.+..+.|++.|. +|+..-.-+.+.+-|++++...+.+.........|....+. ...|+. ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CC
Confidence 221 12234799999999998664 45554455889999999998777776543332233333344 667776 45
Q ss_pred CEEEEEeCCCcEEEEeCCCCcc
Q 007306 564 NRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~~~ 585 (608)
.-+.+.+.+ .+.-|++.+..+
T Consensus 315 ~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 315 ESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred cccccccch-hhheeeccccce
Confidence 555555544 466677766543
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=6.2e-10 Score=111.52 Aligned_cols=281 Identities=12% Similarity=0.069 Sum_probs=180.3
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCC--CCeEEEEEe---
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK--DSISCFALR--- 333 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~s--- 333 (608)
.+++..+..+|.|+-+|.++.-|... -|+...-. +.. .+ .|. -.|-.+.|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i-~dld~p~~----------ppr-------~l------~h~tpw~vad~qws~h~ 79 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYI-IDLDDPFT----------PPR-------WL------HHITPWQVADVQWSPHP 79 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEE-EeccCCCC----------Cce-------ee------eccCcchhcceecccCC
Confidence 67888999999999999988876553 33322111 001 11 122 235566676
Q ss_pred --CCEEEEEeCCcEEEEEcCC---CceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC-ceEEEeeCccc
Q 007306 334 --GSHLFSASGGKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK-KTKAKLKGHQN 405 (608)
Q Consensus 334 --~~~l~s~~d~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~ 405 (608)
...+++.+...-.+|++.. ...-..+.+|...|+.+.|+|+. .+++++.|..+..||+++. .++..+..-..
T Consensus 80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence 3456666666677888753 23344556999999999999998 9999999999999999875 44555555556
Q ss_pred cEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC-CCEEEE-EeCCcEEEEEC
Q 007306 406 RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLS-IHEGQIDVYEA 483 (608)
Q Consensus 406 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~-~~d~~i~iwd~ 483 (608)
....++|+.....+.+.+..+.|++||.+.+. .++. ...+|. ..|+.+.|..- ...+.+ +.|++|+.||.
T Consensus 160 ~asqVkwnyk~p~vlasshg~~i~vwd~r~gs----~pl~-s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 160 AASQVKWNYKDPNVLASSHGNDIFVWDLRKGS----TPLC-SLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred cCceeeecccCcchhhhccCCceEEEeccCCC----cceE-Eecccc---eeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 67889998744444455667889999999864 4444 444566 67888888753 233444 69999999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEE--EEcCCeEEEEeCCCC----------ceeEEEeceeeccCCCccccc
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYV--SCKSGHVKVFDTSTL----------ELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--g~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~g~~~~~v 551 (608)
............ ...+|+.-++-|-|.-.+. --.++.+.+++.++. +.+.++. ||.+. |
T Consensus 232 ~kSt~e~~~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-------GH~D~-V 302 (1081)
T KOG0309|consen 232 SKSTTESKRTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-------GHDDV-V 302 (1081)
T ss_pred cccccccceecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec-------CcchH-H
Confidence 754322222211 2678888888886543322 222335555554432 2333333 66332 2
Q ss_pred ccEEEEEecC---------CCCEEEEEeCCCcEEEEeCCC
Q 007306 552 YPLVIAAHPL---------EPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 552 ~~~~v~~sp~---------d~~~las~s~Dg~v~iW~~~~ 582 (608)
....|-.. ..-.|+|-|.|..+++|-+.+
T Consensus 303 --~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 303 --LEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred --HHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 23333220 123799999999999999865
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.09 E-value=2e-07 Score=94.96 Aligned_cols=259 Identities=9% Similarity=-0.025 Sum_probs=157.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEE
Q 007306 270 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIF 348 (608)
Q Consensus 270 ~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vw 348 (608)
++..++.++.+|.+..+|.++++. +|....+... ... ....+..++.+. ++.+.-+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~------------~W~~~~~~~~-------~ss----P~v~~~~v~v~~~~g~l~al 175 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEV------------AWQTKVAGEA-------LSR----PVVSDGLVLVHTSNGMLQAL 175 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCC------------cccccCCCce-------ecC----CEEECCEEEEECCCCEEEEE
Confidence 355677888899999999888886 7765432110 111 122355666666 8999999
Q ss_pred EcCCCceeeEecCCCCCe-----EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccc-------cEEEEEEeC--
Q 007306 349 SLETFQTLATFANPPPIA-----TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQN-------RITCLAYSL-- 414 (608)
Q Consensus 349 d~~~~~~~~~~~~~~~~v-----~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~~-- 414 (608)
|.++|+.+..+....... .+.... ++.++.++.++.+..+|..+|+.+........ ....+..+|
T Consensus 176 d~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v 254 (394)
T PRK11138 176 NESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV 254 (394)
T ss_pred EccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE
Confidence 999999988876432111 111111 23566677899999999999987655431100 011111222
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeec
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLV 493 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~ 493 (608)
.+..++.++.+|.+..+|..+++......+. ....+.. .+..+++ +.++.+..+|..+|+.+-...
T Consensus 255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 255 VGGVVYALAYNGNLVALDLRSGQIVWKREYG-----------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred ECCEEEEEEcCCeEEEEECCCCCEEEeecCC-----------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc
Confidence 2456667778999999999987643322211 1112222 2344444 688999999999998765432
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCC
Q 007306 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 573 (608)
Q Consensus 494 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 573 (608)
... .....+..+ .+..|+.++.||.|++.|..+|+.+...... ...++. ...+. +..|..++.||
T Consensus 322 ~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s-~P~~~---~~~l~v~t~~G 386 (394)
T PRK11138 322 DLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLS-EPVVA---DDKLLIQARDG 386 (394)
T ss_pred ccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCccee-CCEEE---CCEEEEEeCCc
Confidence 211 111222222 2567888999999999999999988776532 111221 11221 34788889999
Q ss_pred cEEEEeC
Q 007306 574 RVHVIEP 580 (608)
Q Consensus 574 ~v~iW~~ 580 (608)
.|+.+++
T Consensus 387 ~l~~~~~ 393 (394)
T PRK11138 387 TVYAITR 393 (394)
T ss_pred eEEEEeC
Confidence 9988765
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.1e-08 Score=103.41 Aligned_cols=304 Identities=11% Similarity=0.094 Sum_probs=194.3
Q ss_pred ecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE
Q 007306 253 LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 332 (608)
Q Consensus 253 l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 332 (608)
++|.-|...-.++.|+|.|- +|.|+. ..|.+-|..+-+ .++..- .|...|+.+.|
T Consensus 9 lpG~l~~sN~~A~Dw~~~GL-iAygsh-slV~VVDs~s~q---------------------~iqsie--~h~s~V~~VrW 63 (1062)
T KOG1912|consen 9 LPGPLSRSNRNAADWSPSGL-IAYGSH-SLVSVVDSRSLQ---------------------LIQSIE--LHQSAVTSVRW 63 (1062)
T ss_pred CCCCCCcccccccccCccce-EEEecC-ceEEEEehhhhh---------------------hhhccc--cCccceeEEEe
Confidence 55544666678899999983 555544 455555543332 222221 48899999999
Q ss_pred e--------C------CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCC---C--eEEEEeCCCcEEEEeCC
Q 007306 333 R--------G------SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ---D--LFAFGFDDSSILVHCPC 392 (608)
Q Consensus 333 s--------~------~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~--~l~~~~~d~~i~vwd~~ 392 (608)
. + -.|+++. .|.|.+||...+..+..+..|..++..++|-+. . .|++-....++.+|+..
T Consensus 64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 7 1 1456666 799999999999988889999999989988653 2 56666777899999999
Q ss_pred CCceEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCce--ecccceeeeeccCCC----------------
Q 007306 393 TKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK--LCSKFLHSFQTGLVP---------------- 453 (608)
Q Consensus 393 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~---------------- 453 (608)
+|+....+........|+.+.| |.+.+..-+..|.+.+-+.-.... ...+.++ +...|..
T Consensus 144 tG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 144 TGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred CCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecCccchhhhhhhhhccccccC
Confidence 9999887776566777899998 777777777778777766533211 1122233 2222220
Q ss_pred ---Ccc---ceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCeEEE
Q 007306 454 ---ETT---IVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKV 524 (608)
Q Consensus 454 ---~~~---~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg~i~i 524 (608)
... ....++|+|.-+.++. .....+.++|++-..++.+...+ .+.+.-+.+-|+ ...|++...||.+.+
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 000 0112567887655554 68889999999888888777665 444444555555 468999999999999
Q ss_pred EeCCCCceeEEEeceee-ccCCCc------ccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 525 FDTSTLELRCQINLTAY-AQPGTI------SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 525 wd~~~~~~~~~~~~~~~-~~~g~~------~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
|-.+......+.....+ .-.|.. -....+...+-.|...+.++.--.+|.+.+|++.+++
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 98765221111100000 000100 1112223444456445666666778999999998754
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.3e-10 Score=108.95 Aligned_cols=220 Identities=14% Similarity=0.194 Sum_probs=158.8
Q ss_pred eeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-------CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCc
Q 007306 356 LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 356 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 427 (608)
+..+.+|...|..++--.+. .+++++.|++|++|.++. ..+..++..|..+|.++.|-.+-+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 45677899888887766666 899999999999999864 2356678889999999999988888765 4899
Q ss_pred EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC-CCEEE-EE--eCCcEEEEECCCCceeeeecC---CCCCCC
Q 007306 428 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLL-SI--HEGQIDVYEAPTLNHTSQLVP---DKMDLP 500 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~-~~--~d~~i~iwd~~~~~~~~~~~~---~~~~~~ 500 (608)
|.+||.--++.. ..+...... +.+..+..-|+ .+.++ ++ ...+++++|.+.++....++. ++.+.-
T Consensus 806 iHlWDPFigr~L-----aq~~dapk~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~ 878 (1034)
T KOG4190|consen 806 IHLWDPFIGRLL-----AQMEDAPKE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL 878 (1034)
T ss_pred ceeecccccchh-----HhhhcCccc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence 999997664322 211111110 34444544454 34444 33 678999999998775554433 222566
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEE-Ee
Q 007306 501 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV-IE 579 (608)
Q Consensus 501 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i-W~ 579 (608)
+.+++..+.|++++.+-.+|.|.+.|.++|+.+..+.+- .... ..++ .| ....|+....|.++.+ |.
T Consensus 879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm--------ecdl--lqla-ap-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM--------ECDL--LQLA-AP-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc--------cchh--hhhc-Cc-hhHHHHhhcccceeEeeeh
Confidence 889999999999999999999999999999988877643 1111 1333 24 3467888888999999 99
Q ss_pred CCCCccccccCCCCCCc
Q 007306 580 PLESEVEWGKLPFTDSR 596 (608)
Q Consensus 580 ~~~~~~~~~~~~~~~~~ 596 (608)
..++...++..||++..
T Consensus 947 aldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred hcCCeeeeccCCCCcch
Confidence 99888888777776654
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=1.8e-07 Score=84.62 Aligned_cols=224 Identities=13% Similarity=0.120 Sum_probs=136.7
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCCCC--ceEEEeeC---ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 369 FILLPQDLFAFGFDDSSILVHCPCTK--KTKAKLKG---HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 369 ~~~~~~~~l~~~~~d~~i~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
++.+++|.+++.-.|..|.+-..+.. ..+.+..- ....=+.++|+||+..||.+...|+|++||+.......-.+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 45667774444455777777655442 22222222 22345689999999999999999999999998633211111
Q ss_pred eeeeeccCCCCccceEEEEEcCCC-------CEEEEEeCCcEEEEECCC-----CceeeeecCCCC-CCCeEEEEEecCC
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQ-------IHLLSIHEGQIDVYEAPT-----LNHTSQLVPDKM-DLPITYATYSCDG 510 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~-------~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~~-~~~v~~~~~s~~~ 510 (608)
-......-. ..|..+.|-+.. .+|+...+|.++=|-+.. .+...++....| ...|.++.++|..
T Consensus 83 ~~~~~~d~~---~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 83 AMSFPGDLS---DAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred ccccCCccc---cceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 110111111 467777775432 345557888777666532 233344443323 7789999999999
Q ss_pred CEEEEEEcC-----------CeEEEEeCCCCceeEEEe---------------------ceeeccCCCcccccccEEEEE
Q 007306 511 KCIYVSCKS-----------GHVKVFDTSTLELRCQIN---------------------LTAYAQPGTISLELYPLVIAA 558 (608)
Q Consensus 511 ~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~---------------------~~~~~~~g~~~~~v~~~~v~~ 558 (608)
++|+.|+.. .-+.-|.+-++.+-.... ...+...+.....++ .+..
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmSl 237 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMSL 237 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEEE
Confidence 988877642 136677765443322211 001111122234445 8999
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCc--cccccCCCCCCccc
Q 007306 559 HPLEPNRIALGLTNGRVHVIEPLESE--VEWGKLPFTDSREF 598 (608)
Q Consensus 559 sp~d~~~las~s~Dg~v~iW~~~~~~--~~~~~~~~~~~~~~ 598 (608)
|| |+..||+...+|.|.+|++.+-+ ..|....++...+.
T Consensus 238 SP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqPg~~e~ 278 (282)
T PF15492_consen 238 SP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQPGYNEI 278 (282)
T ss_pred CC-CCCEEEEEEcCCeEEEEecCcchhhcccchhhCCCCccC
Confidence 99 89999999999999999998854 47877766655443
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.04 E-value=1.8e-07 Score=95.40 Aligned_cols=286 Identities=9% Similarity=0.014 Sum_probs=171.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCe-EEEEEeCCEEEEEe-CCcEEE
Q 007306 270 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS-GGKISI 347 (608)
Q Consensus 270 ~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~s~~~l~s~~-d~~i~v 347 (608)
.+..+++++.+|.+.-+|..+++. +|......... .....+...+ ..+...+..++.++ ++.+.-
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~------------~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~a 134 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKE------------IWSVDLSEKDG-WFSKNKSALLSGGVTVAGGKVYIGSEKGQVYA 134 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcE------------eeEEcCCCccc-ccccccccccccccEEECCEEEEEcCCCEEEE
Confidence 355788888889999999888876 77754332100 0000000111 12334456666676 899999
Q ss_pred EEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccE-----EEEEEeCCCCEEEEE
Q 007306 348 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS 422 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~ 422 (608)
+|.++|+.+...........+... .++.++++..++.+..+|..+|+.+..+......+ .+... .+..++.+
T Consensus 135 ld~~tG~~~W~~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~ 211 (394)
T PRK11138 135 LNAEDGEVAWQTKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVG 211 (394)
T ss_pred EECCCCCCcccccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEE
Confidence 999999998887644321111122 23466778889999999999999887765321110 11111 12356677
Q ss_pred cCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC---CCCEEEEEeCCcEEEEECCCCceeeeecCCCCCC
Q 007306 423 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDL 499 (608)
Q Consensus 423 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 499 (608)
+.+|.+..+|..+++......+......+.. .....+..+| ++..++++.++.+..+|..+|+.+-.....
T Consensus 212 ~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~--~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~---- 285 (394)
T PRK11138 212 GDNGRVSAVLMEQGQLIWQQRISQPTGATEI--DRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG---- 285 (394)
T ss_pred cCCCEEEEEEccCChhhheeccccCCCccch--hcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----
Confidence 8899999999988764332222100000000 0011111122 344444468899999999999876654321
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEe
Q 007306 500 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 579 (608)
Q Consensus 500 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~ 579 (608)
....+ ..++..|+.++.+|.++.+|..+|+.+...... + .... ...... +.+|..++.||.|++.|
T Consensus 286 ~~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-----~---~~~~-~sp~v~---~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 286 SVNDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-----L---HRLL-TAPVLY---NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CccCc--EEECCEEEEEcCCCeEEEEECCCCcEEEccccc-----C---CCcc-cCCEEE---CCEEEEEeCCCEEEEEE
Confidence 11122 234677888889999999999999876654311 0 0011 112221 35778889999999999
Q ss_pred CCCCccccccCC
Q 007306 580 PLESEVEWGKLP 591 (608)
Q Consensus 580 ~~~~~~~~~~~~ 591 (608)
..+|+..|....
T Consensus 352 ~~tG~~~~~~~~ 363 (394)
T PRK11138 352 REDGRFVAQQKV 363 (394)
T ss_pred CCCCCEEEEEEc
Confidence 999999887643
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.04 E-value=9.1e-08 Score=90.40 Aligned_cols=225 Identities=17% Similarity=0.110 Sum_probs=139.6
Q ss_pred CCcEEEEEcCCCceeeEecCC--CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 342 GGKISIFSLETFQTLATFANP--PPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
+|+|..||..+|+.+...... .....+.....++.+++++.++.+..||..+|+.+..+.. ...+.... ..++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccccc
Confidence 578999999999999888642 1222222232334777778999999999999998877764 22211111 2244566
Q ss_pred EEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC
Q 007306 420 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 498 (608)
Q Consensus 420 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 498 (608)
++++.++.++.+|..+++........ ..... ..........++..++++ .++.|..+|.++|+.+..+......
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLT-SSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE--SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred ccccceeeeEecccCCcceeeeeccc-ccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 77778889999999987654321111 00000 111122222226667765 5899999999999998777653211
Q ss_pred --CC------eEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 499 --LP------ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 499 --~~------v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.. +..-....++ .++.++.++.+.-+|+.+++.+..... .. .. . ...+ ++..|+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---------~~-~~--~-~~~~-~~~~l~~~~ 219 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI---------SG-IY--S-LPSV-DGGTLYVTS 219 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS---------S--EC--E-CEEC-CCTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC---------CC-cc--C-Ccee-eCCEEEEEe
Confidence 11 1222222344 777777777544449999986643221 11 11 2 1334 567888888
Q ss_pred CCCcEEEEeCCCCccccc
Q 007306 571 TNGRVHVIEPLESEVEWG 588 (608)
Q Consensus 571 ~Dg~v~iW~~~~~~~~~~ 588 (608)
.++.|..||+.+++..|.
T Consensus 220 ~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 220 SDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCCEEeE
Confidence 999999999999999995
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=3.2e-09 Score=106.56 Aligned_cols=278 Identities=11% Similarity=0.074 Sum_probs=181.4
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCC--CEEEEEeCCCcEEEEecCCCcc
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSG--DFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g--~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
++.+|-|+-+|.++.-|- .+-|+.+.-.+...... -..-.|-.+.|||.. .+-+.........+|++.....
T Consensus 30 ~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h-----~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHH-----ITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred eeeccccchhhhhhhcCe-EEEeccCCCCCceeeec-----cCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 478999999999998774 45566543223333321 023356677888743 3444444444555677643321
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCC-ceeeEecCCCCCeEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATY 368 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~-~~~~~~~~~~~~v~~ 368 (608)
.-+...+. +|...|+.+.|. ...+++++ |-.+..||+.+. ..+..+..-......
T Consensus 104 -------------------~aIef~lh-ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asq 163 (1081)
T KOG0309|consen 104 -------------------NAIEFVLH-GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQ 163 (1081)
T ss_pred -------------------cceEEEEe-cCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCce
Confidence 11111111 799999999999 56899999 999999999874 345555544555668
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceeccccee
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
++|+-.. .+.+.+..+.|++||.+.| .++..+++|...|+.+.|+. ....+.+.+.||+|++||...........+.
T Consensus 164 Vkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred eeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 8999877 7777788889999999876 67788899999999999876 3345788999999999998764322211111
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEE--E-eCCcE---------EEEECCC-CceeeeecCCCCCCCeEEEEEecCC--
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLS--I-HEGQI---------DVYEAPT-LNHTSQLVPDKMDLPITYATYSCDG-- 510 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~--~-~d~~i---------~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~-- 510 (608)
.. .+|.--.+.|-|.-.+. . .++.+ ..|+..+ .+++.+|.+ |...|....|-..+
T Consensus 244 ---t~-----~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~G--H~D~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 244 ---TN-----FPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVG--HDDVVLEFLWRKRKEC 313 (1081)
T ss_pred ---cc-----CcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecC--cchHHHHHhhhhcccc
Confidence 11 34555556665433332 1 22233 3344433 356777764 67777666664322
Q ss_pred --------CEEEEEEcCCeEEEEeCCC
Q 007306 511 --------KCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 511 --------~~l~sg~~dg~i~iwd~~~ 529 (608)
-.|++-+.|..+++|.+.+
T Consensus 314 ~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCCCccceeEEEeecCCceEeeeccH
Confidence 2599999999999998864
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=7.8e-09 Score=93.51 Aligned_cols=259 Identities=13% Similarity=0.142 Sum_probs=163.1
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc-ceeeecccceeeEEeeCCCCe--eeeccccCCCCCCeEEEEEe-
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK-QSLEEENVNMESQLYQPSSKL--VMTNDIAADPKDSISCFALR- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~v~~s- 333 (608)
..+.|+++.|...|.||++|...|.|.++.-.... +... . ..-+.....+ .++.. .-...|..+.|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceyk-f-----~teFQshe~EFDYLkSl---eieEKin~I~w~~ 95 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYK-F-----FTEFQSHELEFDYLKSL---EIEEKINAIEWFD 95 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchh-h-----hhhhcccccchhhhhhc---cHHHHhhheeeec
Confidence 46789999999999999999999999998754332 1000 0 0000000000 00000 123467888887
Q ss_pred ----CCEEEEEeCCcEEEEEcCCCc-------------------e-----------------------eeEe-cCCCCCe
Q 007306 334 ----GSHLFSASGGKISIFSLETFQ-------------------T-----------------------LATF-ANPPPIA 366 (608)
Q Consensus 334 ----~~~l~s~~d~~i~vwd~~~~~-------------------~-----------------------~~~~-~~~~~~v 366 (608)
..+|+++.|.+|++|.+.... + .+.+ ..|..-+
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 346777779999999874320 0 0111 2455567
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEeeCc-----cccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCC
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGH-----QNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGW 436 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~---~~~~~~~~-----~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~ 436 (608)
.+++++.|. .+++ ..|-.|.+|++.-.. -+-.++.| ..-|++..|+|. ...+...+..|.|++-|++..
T Consensus 176 NSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 176 NSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 788888888 5555 457789999876432 12223333 245788889994 456777888999999999842
Q ss_pred cee-cccc-ee--------eeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCC-ceeeeecCCC---------
Q 007306 437 KKL-CSKF-LH--------SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL-NHTSQLVPDK--------- 496 (608)
Q Consensus 437 ~~~-~~~~-~~--------~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~--------- 496 (608)
..- .... .. ..+.+-. ..|..+.|+++|+++++-.-.+++|||++.. .++.++..+.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eiv---sSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIV---SSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHh---hhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 110 0000 00 0112222 5788999999999999977789999998753 4666653321
Q ss_pred -CCCCe---EEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 497 -MDLPI---TYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 497 -~~~~v---~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
....| ..+.||.|.+.+++|+..+..-+|-..+
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 12233 4578899999999999988888887543
No 292
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.98 E-value=6.2e-07 Score=99.25 Aligned_cols=237 Identities=13% Similarity=0.166 Sum_probs=153.5
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEE----EcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC
Q 007306 323 PKDSISCFALR--GSHLFSAS-GGKISIF----SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 394 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d~~i~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~ 394 (608)
..+.|.++.|- ...++.+. +|.|.+. +..+. .+.....-..+|.+++||||+ .++..+.++++.+.+.. .
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-F 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-c
Confidence 44677788877 44566666 8988888 44432 222233346789999999999 88888888888776532 1
Q ss_pred ceE------------------------EEeeC------------------------ccccEEEEEEeCCCCEEEEEcC--
Q 007306 395 KTK------------------------AKLKG------------------------HQNRITCLAYSLSLNVLVSSGA-- 424 (608)
Q Consensus 395 ~~~------------------------~~~~~------------------------~~~~v~~~~~~~~~~~l~s~~~-- 424 (608)
.++ ..|.| +...-..++|-.||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 111 11111 1223457889999999998774
Q ss_pred -C---CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe----CCcEEEEECCCCceeeeecCC-
Q 007306 425 -D---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----EGQIDVYEAPTLNHTSQLVPD- 495 (608)
Q Consensus 425 -d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~----d~~i~iwd~~~~~~~~~~~~~- 495 (608)
. +.++||+-.. . ++...+.-. +--.+++|.|.|.+|++.. ...|.+|.- +|-....|...
T Consensus 232 ~~~~~R~iRVy~ReG-~------L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~ 300 (928)
T PF04762_consen 232 ETGSRRVIRVYSREG-E------LQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF 300 (928)
T ss_pred CCCceeEEEEECCCc-e------EEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence 2 5789998763 2 221222111 3345789999999999842 245777875 45444444432
Q ss_pred -CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCc
Q 007306 496 -KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 496 -~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 574 (608)
.....|..+.|++|+..||....|. |.+|...+..---+.... . .. ... +..+.|+|.+...|...+.+|.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~--~--~~-~~~--~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR--F--SS-SES--VNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE--c--cC-CCC--CCceEECCCCCCEEEEEecCCc
Confidence 2367899999999999999987665 999999987633322211 0 10 111 2259999987888888888777
Q ss_pred EEEEeC
Q 007306 575 VHVIEP 580 (608)
Q Consensus 575 v~iW~~ 580 (608)
+..++.
T Consensus 373 ~~~~~~ 378 (928)
T PF04762_consen 373 YEIYDF 378 (928)
T ss_pred EEEEEE
Confidence 765443
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=4.3e-06 Score=79.26 Aligned_cols=219 Identities=14% Similarity=0.111 Sum_probs=142.7
Q ss_pred EEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEE
Q 007306 264 RLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA 340 (608)
Q Consensus 264 ~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~ 340 (608)
+++|.+ +|.++++-...+.|..|+..++.. .++. ... ...+++. +..++.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-----------~~~~--------------~~~-~~G~~~~~~~g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-----------EVID--------------LPG-PNGMAFDRPDGRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-----------EEEE--------------SSS-EEEEEEECTTSEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-----------EEEe--------------cCC-CceEEEEccCCEEEEE
Confidence 567887 666666655678888777655543 1111 112 5556666 6677777
Q ss_pred eCCcEEEEEcCCCceeeEecC-----CCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEEEeeCcccc
Q 007306 341 SGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 341 ~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
..+.+.++|..+++....... .....+.+++.|+| ..++.... |.|..++.. ++...... .-..
T Consensus 58 ~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~ 135 (246)
T PF08450_consen 58 DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGF 135 (246)
T ss_dssp ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESS
T ss_pred EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cccc
Confidence 766666779998865544432 34567889999999 66655433 568888877 55444333 3456
Q ss_pred EEEEEEeCCCCEEE-EEcCCCcEEEEECCCCce-e-cccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEE
Q 007306 407 ITCLAYSLSLNVLV-SSGADAQLCVWDAVGWKK-L-CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 482 (608)
Q Consensus 407 v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd 482 (608)
.+.++|+|+++.|+ +-+..+.|..+++..... . ....+.... ... +..-.+++..+|+..++. ..+.|.++|
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~---g~pDG~~vD~~G~l~va~~~~~~I~~~~ 211 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-GGP---GYPDGLAVDSDGNLWVADWGGGRIVVFD 211 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-SSS---CEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred ccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC-CCC---cCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence 78999999998765 566788899999864322 1 111121111 111 246789999999877774 688999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEE
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC 517 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~ 517 (608)
.+ |+.+..+..+ ...+++++|. ++.+.|+..+
T Consensus 212 p~-G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 212 PD-GKLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT-SCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred CC-ccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 96 9988888775 4589999995 6766666543
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=1.4e-08 Score=95.51 Aligned_cols=161 Identities=14% Similarity=0.018 Sum_probs=110.4
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE----EeCCcEEEEE
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS----IHEGQIDVYE 482 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~----~~d~~i~iwd 482 (608)
+..+..+|++++++++..+....++++..... ..+.+. ..... ..-+++.|..+.....+ |....+.+|.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~-~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLD-VSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeee-Eeecc----cCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 34456778889999988888887887766332 112222 11111 12334555544444443 2345677777
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
...+.+...+ +|-..++.++|+||+++|+++..|..|+|-.......+..+.. || .+. |..++.-+
T Consensus 139 ~~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl------GH-~eF--VS~isl~~-- 204 (390)
T KOG3914|consen 139 ADSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL------GH-KEF--VSTISLTD-- 204 (390)
T ss_pred ccccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc------cc-Hhh--eeeeeecc--
Confidence 7655554433 5789999999999999999999999999998887766666654 65 333 44676665
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcccc
Q 007306 563 PNRIALGLTNGRVHVIEPLESEVEW 587 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~~~~~~~ 587 (608)
+..|+|+|.|++|++||+.+|+..-
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred CceeeecCCCCcEEEEecccCCccc
Confidence 4679999999999999999998753
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=8.8e-07 Score=83.66 Aligned_cols=228 Identities=17% Similarity=0.097 Sum_probs=137.1
Q ss_pred CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE-eCCEEEEEe-CCcEEEEEcCCCceee
Q 007306 280 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL-RGSHLFSAS-GGKISIFSLETFQTLA 357 (608)
Q Consensus 280 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-s~~~l~s~~-d~~i~vwd~~~~~~~~ 357 (608)
+|+|..||..+++. +|...-+. .. ....+... .++.+++++ ++.+..||..+|+.+.
T Consensus 2 ~g~l~~~d~~tG~~------------~W~~~~~~--------~~-~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W 60 (238)
T PF13360_consen 2 DGTLSALDPRTGKE------------LWSYDLGP--------GI-GGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLW 60 (238)
T ss_dssp TSEEEEEETTTTEE------------EEEEECSS--------SC-SSEEETEEEETTEEEEEETTSEEEEEETTTSEEEE
T ss_pred CCEEEEEECCCCCE------------EEEEECCC--------CC-CCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEE
Confidence 56777777776665 56532110 01 22222244 377777777 9999999999999998
Q ss_pred EecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEe-eCcc---ccEEEEEEeCCCCEEEEEcCCCcEEEEEC
Q 007306 358 TFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL-KGHQ---NRITCLAYSLSLNVLVSSGADAQLCVWDA 433 (608)
Q Consensus 358 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 433 (608)
.+.... .+.......++.+++++.++.++.+|..+|+.+... .... ..........++..++.+..++.|..+|+
T Consensus 61 ~~~~~~-~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 61 RFDLPG-PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp EEECSS-CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred Eeeccc-cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEec
Confidence 887532 221112223336677778889999999999998774 3221 11222233334778888888999999999
Q ss_pred CCCceecccceeeeeccCCC--CccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC
Q 007306 434 VGWKKLCSKFLHSFQTGLVP--ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 511 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 511 (608)
++++......+. ...+..+ ....+..-....++..++++.++.+..+|+.+++.+.... ...+.. ....++.
T Consensus 140 ~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~----~~~~~~-~~~~~~~ 213 (238)
T PF13360_consen 140 KTGKLLWKYPVG-EPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP----ISGIYS-LPSVDGG 213 (238)
T ss_dssp TTTEEEEEEESS-TT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC----SS-ECE-CEECCCT
T ss_pred CCCcEEEEeecC-CCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec----CCCccC-CceeeCC
Confidence 997754433332 1111000 0011222223334533334567754444999998654332 112222 2457788
Q ss_pred EEEEEEcCCeEEEEeCCCCceeEE
Q 007306 512 CIYVSCKSGHVKVFDTSTLELRCQ 535 (608)
Q Consensus 512 ~l~sg~~dg~i~iwd~~~~~~~~~ 535 (608)
.|+.++.++.|..||+.+|+....
T Consensus 214 ~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 214 TLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEeE
Confidence 888888999999999999987653
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=8.1e-06 Score=77.36 Aligned_cols=212 Identities=19% Similarity=0.132 Sum_probs=132.0
Q ss_pred EEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEc-CCCeEEEEeCCCcEEEEeCCCCceEEEeeC-
Q 007306 329 CFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILL-PQDLFAFGFDDSSILVHCPCTKKTKAKLKG- 402 (608)
Q Consensus 329 ~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~- 402 (608)
++.|. ...|+... .+.|..|+..+++... +.... ...+++. +++.++++..+ .+.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 34555 33444444 7889999998765543 22222 5577777 66655555554 455569998865443332
Q ss_pred ----ccccEEEEEEeCCCCEEEEEcCC--------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 403 ----HQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 403 ----~~~~v~~~~~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
.....+.+++.|+|++.++.... |.|..++.. ++. .. ...+- ...+.++|+|+++.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~---~~---~~~~~----~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV---TV---VADGL----GFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE---EE---EEEEE----SSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE---EE---EecCc----ccccceEECCcchhe
Confidence 34678899999999977765543 456667666 221 11 11111 356799999999988
Q ss_pred EEE--eCCcEEEEECCCCce----eeee-cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeecc
Q 007306 471 LSI--HEGQIDVYEAPTLNH----TSQL-VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 543 (608)
Q Consensus 471 ~~~--~d~~i~iwd~~~~~~----~~~~-~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 543 (608)
+++ ..+.|..+++..... .+.+ ......+..-.+++..+|++.++....+.|.+++.+ |+++..+...
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---- 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP---- 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S----
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC----
Confidence 764 567899998853221 1222 111112347889999999988888889999999988 8888877642
Q ss_pred CCCcccccccEEEEEe-cCCCCEEE
Q 007306 544 PGTISLELYPLVIAAH-PLEPNRIA 567 (608)
Q Consensus 544 ~g~~~~~v~~~~v~~s-p~d~~~la 567 (608)
.. .+++++|. | +.+.|.
T Consensus 224 ----~~--~~t~~~fgg~-~~~~L~ 241 (246)
T PF08450_consen 224 ----VP--RPTNCAFGGP-DGKTLY 241 (246)
T ss_dssp ----SS--SEEEEEEEST-TSSEEE
T ss_pred ----CC--CEEEEEEECC-CCCEEE
Confidence 11 36699995 5 444443
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=1.7e-08 Score=91.36 Aligned_cols=254 Identities=15% Similarity=0.190 Sum_probs=160.7
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc-----eeeEecCCC------------CCeEEEEEcCCC---eEEE
Q 007306 323 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ-----TLATFANPP------------PIATYFILLPQD---LFAF 379 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~---~l~~ 379 (608)
....|+++.|. |.++++|. .|.|.+|.-+... ....+++|. ..|..+.|..++ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 44678999999 89999999 8999999765322 223344553 346778886655 7888
Q ss_pred EeCCCcEEEEeCCCCce------------------------------------------EEEe-eCccccEEEEEEeCCC
Q 007306 380 GFDDSSILVHCPCTKKT------------------------------------------KAKL-KGHQNRITCLAYSLSL 416 (608)
Q Consensus 380 ~~~d~~i~vwd~~~~~~------------------------------------------~~~~-~~~~~~v~~~~~~~~~ 416 (608)
.+.|++|++|.+..... .+.+ ..|...|+++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 88999999998753310 0011 2467778899999988
Q ss_pred CEEEEEcCCCcEEEEECCCCceecccceeeeeccCC--CCccceEEEEEcCCCCEE--EEEeCCcEEEEECCCCce----
Q 007306 417 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPDQIHL--LSIHEGQIDVYEAPTLNH---- 488 (608)
Q Consensus 417 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~l--~~~~d~~i~iwd~~~~~~---- 488 (608)
..++++ .|-.|.+|++.-... ...+-.+. .|. ....-|++..|+|..-.+ ++++.|.|++-|++...+
T Consensus 185 et~lSa-DdLrINLWnl~i~D~--sFnIVDiK-P~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG--SFNIVDIK-PHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred heeeec-cceeeeeccccccCC--ceEEEecc-CccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 888765 478899998875321 11111011 111 001347788999975433 346889999999973221
Q ss_pred --eee--ecCCC------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC-ceeEEEeceeeccCC----Ccccccc-
Q 007306 489 --TSQ--LVPDK------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPG----TISLELY- 552 (608)
Q Consensus 489 --~~~--~~~~~------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~g----~~~~~v~- 552 (608)
+.. +.+.. -...|..+.|+++|+++++-+ --+|+|||+... .++.++..+...... .+...++
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 111 10000 145788899999999998864 368999999754 455555433211000 0112222
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 553 PLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 553 ~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
-..+.|+. |...+.+|+.....-|+-..+
T Consensus 340 kFeisfSg-d~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 340 KFEISFSG-DDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eEEEEecC-Ccccccccccccceeeecccc
Confidence 23678888 678888988887777776544
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.87 E-value=3.9e-06 Score=78.70 Aligned_cols=218 Identities=18% Similarity=0.120 Sum_probs=142.7
Q ss_pred EEEEEe-CC-cEEEEEcCCCceeeEecCCCCCe--EEEEEcCCC-eEEEEeC-----CCcEEEEeCC-CCceEEEeeCcc
Q 007306 336 HLFSAS-GG-KISIFSLETFQTLATFANPPPIA--TYFILLPQD-LFAFGFD-----DSSILVHCPC-TKKTKAKLKGHQ 404 (608)
Q Consensus 336 ~l~s~~-d~-~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~-~l~~~~~-----d~~i~vwd~~-~~~~~~~~~~~~ 404 (608)
.++.+- -| ...+||..+++....+....+.- -.-.|++|| +|++.-. .|.|-|||.. +-+.+..+..|.
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G 98 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG 98 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC
Confidence 344444 33 46688888888887776544332 245799999 7776543 4689999998 567788888887
Q ss_pred ccEEEEEEeCCCCEEEEEc------------------CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC
Q 007306 405 NRITCLAYSLSLNVLVSSG------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 466 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 466 (608)
-....+.+.|||+.|+++. ++-++.+.|..+++......+. ...|. .+|+.+++.++
T Consensus 99 IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp--~~~~~---lSiRHLa~~~~ 173 (305)
T PF07433_consen 99 IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP--PDLHQ---LSIRHLAVDGD 173 (305)
T ss_pred cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC--ccccc---cceeeEEecCC
Confidence 7778899999998877762 2334556666665543332221 12344 58999999999
Q ss_pred CCEEEEE-eCC-------cEEEEECCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCce
Q 007306 467 QIHLLSI-HEG-------QIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL 532 (608)
Q Consensus 467 ~~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~ 532 (608)
|..++.. ..+ -+-+++. +..+..+..+. -.+.+-+|++++++.++++.+ ..|.+.+||..+++.
T Consensus 174 G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 174 GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 9887764 222 1444443 33233332211 257899999999999886655 568999999999998
Q ss_pred eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcE
Q 007306 533 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV 575 (608)
Q Consensus 533 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v 575 (608)
+...... . +..++-.+ ++ +++|.+. |.+
T Consensus 252 ~~~~~l~----------D--~cGva~~~-~~-f~~ssG~-G~~ 279 (305)
T PF07433_consen 252 LGSVPLP----------D--ACGVAPTD-DG-FLVSSGQ-GQL 279 (305)
T ss_pred eeccccC----------c--eeeeeecC-Cc-eEEeCCC-ccE
Confidence 8876532 1 22566665 44 5665543 443
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=1.9e-06 Score=87.47 Aligned_cols=195 Identities=12% Similarity=0.067 Sum_probs=115.3
Q ss_pred CcEEEEEEeeCCCE-EEEEeCC-CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 260 GRVVRLIYSHSGDF-LVALTQT-ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 260 ~~V~~~~fsp~g~~-l~s~s~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
+.+....|||||+. ++..+.+ +.-.|| ++|..+++..... ...+......|+ |+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iy-------------------v~dl~tg~~~~lt---~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLY-------------------KYNLYTGKKEKIA---SSQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEE-------------------EEECCCCcEEEEe---cCCCcEEeeEECCCCC
Confidence 37788999999985 6655554 232333 3344444433221 133445567788 66
Q ss_pred EEEEE-e-C--CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC-CC--cEEEEeCCCCceEEEeeCccccE
Q 007306 336 HLFSA-S-G--GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-DS--SILVHCPCTKKTKAKLKGHQNRI 407 (608)
Q Consensus 336 ~l~s~-~-d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~v 407 (608)
.++.. + + ..|.++|+.+++.. .+..+........|+||| .|+..+. .+ .|+++|+.+++..+.... ..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 55543 3 3 56888888877643 344333333456899999 5555543 33 688889988876443321 11
Q ss_pred EEEEEeCCCCEEEEEcCC---------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eC-
Q 007306 408 TCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HE- 475 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d- 475 (608)
....|+|||+.++..+.. ..|.+.|+.+++. .. +..+. ......|+|||+.++. . ..
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~---LT~~~-----~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RR---LTANG-----VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EE---CCCCC-----CcCCeEECCCCCEEEEEEccCC
Confidence 124899999998876643 3678888877542 11 22221 1235789999998886 3 22
Q ss_pred -CcEEEEECCCCceeeee
Q 007306 476 -GQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 476 -~~i~iwd~~~~~~~~~~ 492 (608)
..+.+.++. |.....+
T Consensus 391 ~~~L~~~~l~-g~~~~~l 407 (419)
T PRK04043 391 QSALGIIRLN-YNKSFLF 407 (419)
T ss_pred cEEEEEEecC-CCeeEEe
Confidence 247777774 4433334
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.86 E-value=2.4e-06 Score=80.09 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=121.8
Q ss_pred EEEe--CCEEEEEe-C-----CcEEEEEcC-CCceeeEecCCCCCeEEEEEcCCC-eEEEEe------------------
Q 007306 330 FALR--GSHLFSAS-G-----GKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGF------------------ 381 (608)
Q Consensus 330 v~~s--~~~l~s~~-d-----~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~------------------ 381 (608)
-.|+ |++|++.- | |.|-|||.. +.+.+..+..+.-....+.+.||| .|+++.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 4677 88888875 3 789999998 677788888777777788899999 666553
Q ss_pred CCCcEEEEeCCCCceEEEee----CccccEEEEEEeCCCCEEEEEcCCCc-------EEEEECCCCceecccceee-eec
Q 007306 382 DDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQ-------LCVWDAVGWKKLCSKFLHS-FQT 449 (608)
Q Consensus 382 ~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~-------i~vwd~~~~~~~~~~~~~~-~~~ 449 (608)
.+-++...|..+|+.+.... -|...|+.+++.++|..++..-..|. +-+++-... ........ ...
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~ 213 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWR 213 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHH
Confidence 23357778888998887643 37788999999999876665433332 333332220 00000000 000
Q ss_pred cCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 450 GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 450 ~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.-. +.+-+|++++++..+++ + ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+.
T Consensus 214 ~l~---~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 214 RLN---GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred hhC---CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCCC
Confidence 111 57889999999998887 4 77899999999999987764 3446667766666 5655543
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=6.6e-08 Score=91.01 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=102.6
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc----eeeEecCCCCCeEEEEEcCCC-eEE---EEeCCCcEEEEeCCCCceEEEeeCcc
Q 007306 334 GSHLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFA---FGFDDSSILVHCPCTKKTKAKLKGHQ 404 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~---~~~~d~~i~vwd~~~~~~~~~~~~~~ 404 (608)
++++|.+. +....++++.... .+... .-...-+++.+..+. ... ..++...+.+|....+.+. ..-||-
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhv 151 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHV 151 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhh
Confidence 55666666 5565566654322 12222 122222344444444 333 3344556667766654443 344799
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEEC
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 483 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~ 483 (608)
+.+..++|+||+++++++..|..|++-.... ...+.++.-||. .-|..++.-++.. |++ |.|+++++||+
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa-----~f~IesfclGH~---eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----TFVIESFCLGHK---EFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCc-----ccchhhhccccH---hheeeeeeccCce-eeecCCCCcEEEEec
Confidence 9999999999999999999999999987766 355666777888 7899999998765 555 69999999999
Q ss_pred CCCceeeeecC
Q 007306 484 PTLNHTSQLVP 494 (608)
Q Consensus 484 ~~~~~~~~~~~ 494 (608)
.+|+.+.++..
T Consensus 223 ~sgk~L~t~dl 233 (390)
T KOG3914|consen 223 TSGKLLDTCDL 233 (390)
T ss_pred ccCCcccccch
Confidence 99998877643
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=6.1e-09 Score=95.64 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=119.8
Q ss_pred EEcCC--CeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 370 ILLPQ--DLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 370 ~~~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
+|+-+ ++-++.+.+..|-+-|+.+|.. +.|. ..+.|.++.|...++++..|+.+|.|..+|++....-...+.+.+
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 66543 3225556677888889888743 2333 567788999999899999999999999999998543333444433
Q ss_pred eccCCCCccceEEEEEcC-CCCEEEE-EeCCcEEEEECCCCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 007306 448 QTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 522 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp-~~~~l~~-~~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i 522 (608)
. |. +.|+++..-. ++.+|++ +.+|+|++||.+.-++ +.++.++.....-.-+-..+....+++++.|...
T Consensus 296 y--h~---Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 296 Y--HD---SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYT 370 (425)
T ss_pred E--cC---cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEE
Confidence 3 33 6788887766 6677776 5999999999987666 7888654333333344556778899999999999
Q ss_pred EEEeCCCCceeEEEec
Q 007306 523 KVFDTSTLELRCQINL 538 (608)
Q Consensus 523 ~iwd~~~~~~~~~~~~ 538 (608)
+||.+..|.++.+++.
T Consensus 371 RiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPF 386 (425)
T ss_pred EEEecccCceeeccCC
Confidence 9999999999998764
No 303
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-07 Score=89.67 Aligned_cols=292 Identities=15% Similarity=0.181 Sum_probs=187.1
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.+.|+.+..+ -.+++.+++.||.++.|.-..-.- -+.+.... .|-..|.+++.+ +-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------------------vEfVKhFr--aHL~~I~sl~~S~dg~ 66 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------------------VEFVKHFR--AHLGVILSLAVSYDGW 66 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------------------eeehhhhH--HHHHHHHhhhccccce
Confidence 88888888655 456899999999999886432110 01111111 477778888888 55
Q ss_pred EEEEEe--CCcEEEEEcCCCceeeEec--CCCCCeEEEEEcCCC---eEEEE-eCCCcEEEEeCCCCc-eEEEee-Cccc
Q 007306 336 HLFSAS--GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD---LFAFG-FDDSSILVHCPCTKK-TKAKLK-GHQN 405 (608)
Q Consensus 336 ~l~s~~--d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~---~l~~~-~~d~~i~vwd~~~~~-~~~~~~-~~~~ 405 (608)
.+.+.+ |..++++|+++...+..++ -.++.+ +...++.. .++++ -.++.+.++|-.... ....++ -|..
T Consensus 67 L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 67 LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred eEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 666755 7899999998766553333 222333 22234433 44444 357899999976543 333333 4999
Q ss_pred cEEEEEEeCCCCEEEEEcCCCcEEEEECCCC-ceec---------ccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee
Q 007306 406 RITCLAYSLSLNVLVSSGADAQLCVWDAVGW-KKLC---------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH 474 (608)
Q Consensus 406 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-~~~~---------~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~ 474 (608)
+|.++.++|.+..+++....|.|.-|..... +... ...+..+.... ....++.|+|+|..+.+ +.
T Consensus 146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K----t~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK----TEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred ceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc----cCccceEEccccCcccccCc
Confidence 9999999999999999999999999988731 1000 00111112222 46779999999999998 79
Q ss_pred CCcEEEEECCCCceeeeecCCC------------------------------C-CCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDK------------------------------M-DLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~------------------------------~-~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
|..|++++.++|+.++.+.... | ...-+.+.|...|++|+-|+-=| |+
T Consensus 222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik 300 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK 300 (558)
T ss_pred ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence 9999999999988766542210 1 23445678888999999887655 88
Q ss_pred EEeCCCCceeEEEeceeec-----------cCCCcccccc-----cEEEEEecCCCCEEEEEeCCCcEEEE
Q 007306 524 VFDTSTLELRCQINLTAYA-----------QPGTISLELY-----PLVIAAHPLEPNRIALGLTNGRVHVI 578 (608)
Q Consensus 524 iwd~~~~~~~~~~~~~~~~-----------~~g~~~~~v~-----~~~v~~sp~d~~~las~s~Dg~v~iW 578 (608)
+.++.++.....+-..... ..++ ..... -..+.+.+ |+.+++++-.-..++++
T Consensus 301 vin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~-~~~~~~~a~~np~~~~~~-dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 301 VINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSN-LAALEVAASNNPLLEFQK-DPTIVCTAFKKNRFYLF 369 (558)
T ss_pred EEEeecCeEEEEeccchhhhhhhHHHHhhhhhcc-chhhhhhhccCcccccCC-CCeEEEeeeecceEEEE
Confidence 9999988876655321100 0000 00000 00233556 67777777777778887
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=5.4e-09 Score=107.00 Aligned_cols=195 Identities=14% Similarity=0.182 Sum_probs=141.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCC-cEEEEeCCC-C
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDS-SILVHCPCT-K 394 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~-~i~vwd~~~-~ 394 (608)
.|+...+|++|+ .+.|+.|+ .|.|+++++.+|.......+|..+|+.+.-+.+| +|.+++... -..+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 477889999999 67899999 9999999999999999999999999999999999 444444444 577899764 3
Q ss_pred ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe
Q 007306 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 474 (608)
Q Consensus 395 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 474 (608)
...+.|.+ -.++.|+.....-+.|+.-....+||+.++. ++.+.+.+.......-+...|+|+.++++-
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-----~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS-----PLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCc-----HHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 44444543 3567887765555556666778899999943 444333332211123467889999887764
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
|| .+||++..+.++.|.. -..-..-.|+|.|.-++..++ |||+++.+++...+
T Consensus 1248 dG--vLWDvR~~~aIh~FD~---ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQ---FTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhh---heecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 22 3899988777777642 112233468999999998876 99999988776654
No 305
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=7.8e-07 Score=90.46 Aligned_cols=239 Identities=13% Similarity=0.088 Sum_probs=171.4
Q ss_pred CCCCeEEEEEe-CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCC------------C-eEEEEeCCCcEEE
Q 007306 323 PKDSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQ------------D-LFAFGFDDSSILV 388 (608)
Q Consensus 323 ~~~~v~~v~~s-~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------~-~l~~~~~d~~i~v 388 (608)
|...-.++.|+ +.+++.|+...|.+-|..+-+.++.+..|...|+.+.|.|- . .|+++...|.|.+
T Consensus 14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred CcccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 33446678899 89999999999999999999999999999999999999752 2 6788888999999
Q ss_pred EeCCCCceEEEeeCccccEEEEEEeC---CC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 389 HCPCTKKTKAKLKGHQNRITCLAYSL---SL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 389 wd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
||...+..+..+..|..++..+.|-| +. ..|++-....++.+|+..+|+.... ...+| ....++.+.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-----~~ys~----~iLs~f~~D 164 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-----YDYSH----EILSCFRVD 164 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-----cccCC----cceeeeeeC
Confidence 99999998888988999999999976 33 4577777788999999999764322 22233 256668888
Q ss_pred CC-CCEEEE-EeCCcEEEEECCC-------CceeeeecCCCCCC-------------------------CeEEEEEecCC
Q 007306 465 PD-QIHLLS-IHEGQIDVYEAPT-------LNHTSQLVPDKMDL-------------------------PITYATYSCDG 510 (608)
Q Consensus 465 p~-~~~l~~-~~d~~i~iwd~~~-------~~~~~~~~~~~~~~-------------------------~v~~~~~s~~~ 510 (608)
|- .+.+.. +..|.+.+-+.-. |+.++ +... |.. ....++|+|.-
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q-I~sd-~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ-ITSD-HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCCCCCCCceeEE-EecC-ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh
Confidence 73 455555 6667666665321 11111 1110 100 12235678877
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecC-CCCEEEEEeCCCcEEEEeCCC
Q 007306 511 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 511 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~-d~~~las~s~Dg~v~iW~~~~ 582 (608)
+.++...-...+.|+|++-...+...... .+... -+.+-|+ ....|.+.-.||.+.||-.+.
T Consensus 243 rn~lfi~~prellv~dle~~~~l~vvpie--------r~~ak--fv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 243 RNILFITFPRELLVFDLEYECCLAVVPIE--------RGGAK--FVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hceEEEEeccceEEEcchhhceeEEEEec--------cCCcc--eeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 76666667788999999988877776543 22233 3455552 346788999999999998766
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=8.7e-06 Score=74.01 Aligned_cols=200 Identities=16% Similarity=0.106 Sum_probs=127.3
Q ss_pred CCEEEEEeCCcEEEEEcCC--CceeeEec---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-----
Q 007306 334 GSHLFSASGGKISIFSLET--FQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----- 402 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~--~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~----- 402 (608)
|+.||...|..|-+-..++ ...+.... .....=..++|+||+ .||.+...|+|++||+.... +..+..
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~ 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFP 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccC
Confidence 6677777777777665543 12222222 222334679999999 99999999999999987533 333322
Q ss_pred --ccccEEEEEEeCC------CCEEEEEcCCCcEEEEECCCCce---ecccceeeeeccCCCCccceEEEEEcCCCCEEE
Q 007306 403 --HQNRITCLAYSLS------LNVLVSSGADAQLCVWDAVGWKK---LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 403 --~~~~v~~~~~~~~------~~~l~s~~~d~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 471 (608)
-...|..+.|.+. ...|++...+|.++-|-+..+.. .....+. +..|-+ ..|.++.++|..+.|+
T Consensus 88 ~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs--f~~~yp--~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 88 GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS--FSSHYP--HGINSAVYHPKHRLLL 163 (282)
T ss_pred CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE--ecccCC--CceeEEEEcCCCCEEE
Confidence 2345666666542 12466667788888777643211 1112222 223333 6899999999998888
Q ss_pred E-E-eC-C---------cEEEEECCCCceeee--------------------------ecC-CCCCCCeEEEEEecCCCE
Q 007306 472 S-I-HE-G---------QIDVYEAPTLNHTSQ--------------------------LVP-DKMDLPITYATYSCDGKC 512 (608)
Q Consensus 472 ~-~-~d-~---------~i~iwd~~~~~~~~~--------------------------~~~-~~~~~~v~~~~~s~~~~~ 512 (608)
+ | .. . .+..|.+-++.+... +.. ......|..+..||||..
T Consensus 164 VgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~ 243 (282)
T PF15492_consen 164 VGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSL 243 (282)
T ss_pred EeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCE
Confidence 7 3 11 1 366676533221100 000 112567999999999999
Q ss_pred EEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 513 IYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 513 l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
|++...+|.|.+|++.+-++......
T Consensus 244 La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 244 LACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred EEEEEcCCeEEEEecCcchhhcccch
Confidence 99999999999999999887777654
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.72 E-value=9.1e-06 Score=77.13 Aligned_cols=268 Identities=19% Similarity=0.245 Sum_probs=157.5
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC----------CCcEEEEecCCCcceeeecccc
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~----------dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
+.+.+.|.+. +++.-. + ..+-.-.+..||||+.+++++. .-.|.+||..+-...
T Consensus 17 ~rv~viD~d~----~k~lGm-i----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~------- 80 (342)
T PF06433_consen 17 SRVYVIDADS----GKLLGM-I----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT------- 80 (342)
T ss_dssp EEEEEEETTT----TEEEEE-E----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE-------
T ss_pred ceEEEEECCC----CcEEEE-e----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc-------
Confidence 3577777763 333322 1 1333444778999999887653 234556665555431
Q ss_pred eeeEEeeCCCCeeeeccccCCCC----CCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCceeeEecCCCCCeEEEEEc
Q 007306 302 MESQLYQPSSKLVMTNDIAADPK----DSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATYFILL 372 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~----~~v~~v~~s--~~~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 372 (608)
+++ .++.+|. .....++++ +++++... ...|.|-|+..++.+..+..+. |.-.-
T Consensus 81 -----~EI--------~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iy 143 (342)
T PF06433_consen 81 -----GEI--------EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIY 143 (342)
T ss_dssp -----EEE--------EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEE
T ss_pred -----ceE--------ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEE
Confidence 111 0111111 122334666 77777666 4689999999999888876443 43344
Q ss_pred CCC--eEEEEeCCCcEEEEeCC-CCceEEEe----eCccccE-EEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccce
Q 007306 373 PQD--LFAFGFDDSSILVHCPC-TKKTKAKL----KGHQNRI-TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 444 (608)
Q Consensus 373 ~~~--~l~~~~~d~~i~vwd~~-~~~~~~~~----~~~~~~v-~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 444 (608)
|.+ .|.+-+.||++.-..+. .|+..... .....++ ..-++...+..++..+.+|.|+--|+...........
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 444 67788889998888877 45544221 1112222 2334555566666688899999988877543322222
Q ss_pred eeee------ccCCCCccceEEEEEcCCCCEEEE----EeCC-------cEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 007306 445 HSFQ------TGLVPETTIVNHIQFHPDQIHLLS----IHEG-------QIDVYEAPTLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 445 ~~~~------~~~~~~~~~v~~v~~sp~~~~l~~----~~d~-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
. +. .+..| +.-.-+++++....|++ +.++ .|.++|+.+++.+.++.. ..++.++..+
T Consensus 224 ~-~~t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vs 297 (342)
T PF06433_consen 224 S-LLTDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVS 297 (342)
T ss_dssp E-SS-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEE
T ss_pred c-ccCccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEc
Confidence 2 11 11122 33445888876655555 2222 399999999999999875 4567799999
Q ss_pred cCCC-EEEEEE-cCCeEEEEeCCCCceeEEEec
Q 007306 508 CDGK-CIYVSC-KSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 508 ~~~~-~l~sg~-~dg~i~iwd~~~~~~~~~~~~ 538 (608)
.+.+ +|++.+ .++.+.+||..+|+.+.++..
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 8776 565544 579999999999999988763
No 308
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.72 E-value=2.6e-08 Score=91.59 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=116.1
Q ss_pred EEEe----CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-----ceEEE
Q 007306 330 FALR----GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-----KTKAK 399 (608)
Q Consensus 330 v~~s----~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-----~~~~~ 399 (608)
++|+ +-.+.+|.+..|-+-|+++|... .|. ..+.|.++.|...+ .+..|..+|.|..+|++.+ .+...
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 3666 44544445889999999987542 333 56678888898877 9999999999999999875 33344
Q ss_pred eeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCc
Q 007306 400 LKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 477 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~ 477 (608)
+- |.+.|+++..-. ++.+|++.+.+|+|++||++.-+. .+.+. ..+||.... .-.-+...+....+++ |.|..
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--~~~V~-qYeGHvN~~-a~l~~~v~~eeg~I~s~GdDcy 369 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--KKSVM-QYEGHVNLS-AYLPAHVKEEEGSIFSVGDDCY 369 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--cccee-eeecccccc-cccccccccccceEEEccCeeE
Confidence 43 888999988766 788999999999999999987332 22355 567776311 1122344566666666 78999
Q ss_pred EEEEECCCCceeeeecCC
Q 007306 478 IDVYEAPTLNHTSQLVPD 495 (608)
Q Consensus 478 i~iwd~~~~~~~~~~~~~ 495 (608)
.+||.++.|.++.++..+
T Consensus 370 tRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 370 TRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred EEEEecccCceeeccCCC
Confidence 999999999998887653
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=2.3e-07 Score=82.19 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=119.1
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceE------------EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEEC
Q 007306 366 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTK------------AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDA 433 (608)
Q Consensus 366 v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 433 (608)
++.+.+..+..|+++..++.+..+....+.+. +.+..|+.+-.+-+.+--++.++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 44555544446677777766665554443332 223223332222223334667999999999999998
Q ss_pred CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE------eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 007306 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
+..... ...+...|. .-.+.+....+..+.++ .-+..+.|+++-.+....-.. ....|.+++-+
T Consensus 119 ~~~~~~----~~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~--~~~~v~~l~~h 188 (319)
T KOG4714|consen 119 DKDLAL----MSRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK--ALDAVTALCSH 188 (319)
T ss_pred hHHHhh----hhhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc--ccccchhhhCC
Confidence 762111 111222222 12233333445555552 234567777654332211111 13458899988
Q ss_pred cCCC-EEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 508 CDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 508 ~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
|..+ .+++|+.||.+-+||.+.......+. ..| ...++ .+-|||.++..|.+++.||.+.-||..+
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l------~ah-k~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL------KAH-KAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHH------HHh-hhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 8654 56678889999999999874333222 133 55677 9999999999999999999999999874
No 310
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=4.4e-05 Score=68.20 Aligned_cols=138 Identities=13% Similarity=0.055 Sum_probs=94.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIF 348 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vw 348 (608)
..+++.|+..+.+.--|..+++. +|... -...+.+-+.- |++++.|+ .|.+.+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~------------~We~i------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl 78 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNL------------IWEAI------------LGVRIECSAIVVGDFVVLGCYSGGLYFL 78 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcE------------Eeehh------------hCceeeeeeEEECCEEEEEEccCcEEEE
Confidence 45677788888887766666665 56532 22445555555 88999999 9999999
Q ss_pred EcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC-CCCEEEEEcCCC
Q 007306 349 SLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADA 426 (608)
Q Consensus 349 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~ 426 (608)
+.++|.....+.....--......+++ .+..|+.|++.+..|.++..++...+...+...+-+..| ++. |..+...|
T Consensus 79 ~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~t~G 157 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAITAG 157 (354)
T ss_pred EecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEeccc
Confidence 999998888776433222234567888 999999999999999999888877765444444455666 444 44444455
Q ss_pred cEEEEEC
Q 007306 427 QLCVWDA 433 (608)
Q Consensus 427 ~i~vwd~ 433 (608)
.+.--..
T Consensus 158 ~vlavt~ 164 (354)
T KOG4649|consen 158 AVLAVTK 164 (354)
T ss_pred eEEEEcc
Confidence 5443333
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.65 E-value=2.6e-05 Score=81.55 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=168.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCe--EEEEEeC-CEEEEEe-CCcEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI--SCFALRG-SHLFSAS-GGKIS 346 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~v~~s~-~~l~s~~-d~~i~ 346 (608)
+..++.++.++.+.-.|..+++. +|....+.... .....+ ..+...+ ..++.++ ++.|.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~------------~W~~~~~~~~~-----~~~~~~~~~g~~~~~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV------------LWRYDPKLPAD-----RGCCDVVNRGVAYWDPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh------------hceeCCCCCcc-----ccccccccCCcEEccCCeEEEecCCCeEE
Confidence 44577788889999889888876 67654332100 000111 1123334 7777777 99999
Q ss_pred EEEcCCCceeeEecCCCCC-----e-EEEEEcCCCeEEEEe---------CCCcEEEEeCCCCceEEEeeCccc------
Q 007306 347 IFSLETFQTLATFANPPPI-----A-TYFILLPQDLFAFGF---------DDSSILVHCPCTKKTKAKLKGHQN------ 405 (608)
Q Consensus 347 vwd~~~~~~~~~~~~~~~~-----v-~~~~~~~~~~l~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~------ 405 (608)
-+|.++|+.+..+...... + ....+. ++.++.++ .++.+..+|..+|+.+..+.....
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~ 202 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFP 202 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCC
Confidence 9999999999887643321 1 111222 24444443 367899999999998877654211
Q ss_pred --------------cE-EEEEEeCCCCEEEEEcCCC------------------cEEEEECCCCceecccceeee----e
Q 007306 406 --------------RI-TCLAYSLSLNVLVSSGADA------------------QLCVWDAVGWKKLCSKFLHSF----Q 448 (608)
Q Consensus 406 --------------~v-~~~~~~~~~~~l~s~~~d~------------------~i~vwd~~~~~~~~~~~~~~~----~ 448 (608)
.+ .+.++.+.+..++.++.++ .|.-+|..+++..-....... .
T Consensus 203 ~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~ 282 (488)
T cd00216 203 TWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDY 282 (488)
T ss_pred CCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccc
Confidence 01 1234555566777777665 688889998775443221100 0
Q ss_pred ccCCCCccceEEEEEcCCCC---EEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE--------
Q 007306 449 TGLVPETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-------- 516 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~---~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg-------- 516 (608)
.+..+ ..+..+. .-+|. .++++ .+|.++..|.++|+.+-..... ...++.+| ..++.+
T Consensus 283 ~~~s~--p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~ 352 (488)
T cd00216 283 DGPNQ--PSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGL 352 (488)
T ss_pred ccCCC--CeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccC
Confidence 11110 0111111 11333 34454 7899999999999988765431 11123333 233332
Q ss_pred ----------EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 517 ----------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 517 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
..+|.|.-.|..+|+.+...........-..........++. .+..+..++.||.|+.+|..+|+..
T Consensus 353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCcee
Confidence 236889999999999888765321000000000111011222 3568888899999999999999999
Q ss_pred cccCCC
Q 007306 587 WGKLPF 592 (608)
Q Consensus 587 ~~~~~~ 592 (608)
|....+
T Consensus 430 W~~~~~ 435 (488)
T cd00216 430 WKFRTP 435 (488)
T ss_pred eEEECC
Confidence 987643
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=3.6e-07 Score=81.07 Aligned_cols=157 Identities=15% Similarity=0.126 Sum_probs=101.4
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
|+++-.+-+.+-.++.++++..||.+.+.+.+....... .... .|.+.......+ ++.
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~---------------~i~~------~~~~~as~~~~~~~~~ 146 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS---------------RIPS------IHSGSASRKICRHGNS 146 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh---------------hccc------ccccccccceeecccE
Confidence 454444444555567799999999999887654211000 0000 011111111112 444
Q ss_pred EEEEeC------CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEEeeCccccE
Q 007306 337 LFSASG------GKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 407 (608)
Q Consensus 337 l~s~~d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v 407 (608)
+.++.- +..+.|+++..+....-......|++++-+|.. .+++|+.||.+-+||.+.... ...++.|..++
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i 226 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEI 226 (319)
T ss_pred EecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhh
Confidence 444432 455666655332222222223458899999987 788899999999999998743 35567899999
Q ss_pred EEEEEeC-CCCEEEEEcCCCcEEEEECCC
Q 007306 408 TCLAYSL-SLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 408 ~~~~~~~-~~~~l~s~~~d~~i~vwd~~~ 435 (608)
..+-|+| ++..|++++.||.+..||..+
T Consensus 227 ~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 227 WEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999 678899999999999999876
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=3.9e-07 Score=86.89 Aligned_cols=215 Identities=13% Similarity=0.045 Sum_probs=147.8
Q ss_pred CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC--C-ceEEEeeCccccEEEEEEeCCCCEEEEEcC-CCcEEEEECCCCc
Q 007306 362 PPPIATYFILLPQDLFAFGFDDSSILVHCPCT--K-KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGWK 437 (608)
Q Consensus 362 ~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~ 437 (608)
|...|+.+.......+.+++.||.++.|.... | +.++.+..|...|.+++.+.+|..+.+++. |..++++|+.+-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 56666666544444899999999999997543 2 445667778899999999999999999777 9999999998744
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCC--CEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 513 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 513 (608)
......+. .-| +.+. ...+|.. ..++++ .++.+.++|-....+...+...-|..+|..+.+.+-+..+
T Consensus 88 minmiKL~-----~lP--g~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 88 MINMIKLV-----DLP--GFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred hhhhcccc-----cCC--CceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 32222222 111 2222 2223321 244444 7899999998765544444444589999999999999999
Q ss_pred EEEEcCCeEEEEeCCC------CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 514 YVSCKSGHVKVFDTST------LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 514 ~sg~~dg~i~iwd~~~------~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
++....|.|.-|..+. .++...+....+. .|-....-..+++.|+| ++..+++-+.|..|+++...+++..
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL-y~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL-YGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchh-hcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhh
Confidence 9999999999999873 2111111110000 01112222356899999 7999999999999999999998763
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.59 E-value=0.00019 Score=75.11 Aligned_cols=281 Identities=14% Similarity=0.093 Sum_probs=157.8
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCcee-eEeecCC--CCCCcEE--EEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDN--SFGGRVV--RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~-~~~l~~~--~h~~~V~--~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
+..++.++.++.+.-.|..++ +.. .+.+... .+...+. .++.. ++..++.++.+|.+.-+|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG----~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~--- 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATG----KVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ--- 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCC----hhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE---
Confidence 345666777788888887642 222 1111100 0000110 01111 225688888899999999988886
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCe-EEEEEeCCEEEEEe----------CCcEEEEEcCCCceeeEecCCCC-
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSI-SCFALRGSHLFSAS----------GGKISIFSLETFQTLATFANPPP- 364 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~s~~~l~s~~----------d~~i~vwd~~~~~~~~~~~~~~~- 364 (608)
+|......... ....+ .+..+.+..++.++ ++.+..+|..+|+.+..+.....
T Consensus 133 ---------~W~~~~~~~~~------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 133 ---------VWKFGNNDQVP------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred ---------eeeecCCCCcC------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 77654332100 00000 11122234444432 57889999999998887753211
Q ss_pred -------------------Ce-EEEEEcCCC-eEEEEeCCC------------------cEEEEeCCCCceEEEeeCccc
Q 007306 365 -------------------IA-TYFILLPQD-LFAFGFDDS------------------SILVHCPCTKKTKAKLKGHQN 405 (608)
Q Consensus 365 -------------------~v-~~~~~~~~~-~l~~~~~d~------------------~i~vwd~~~~~~~~~~~~~~~ 405 (608)
.+ ...++.+.+ .++.++.++ .|.-+|..+|+.+..++.-..
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 11 123445555 777776554 799999999999877653111
Q ss_pred cE------EEEEEe----CCCC---EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 406 RI------TCLAYS----LSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 406 ~v------~~~~~~----~~~~---~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.. ....+. -++. .++.++.+|.+...|.++++..-..... ...++.+| +...+.
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~------------~~~~~~~~-~~vyv~ 344 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV------------EQPMAYDP-GLVYLG 344 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee------------ccccccCC-ceEEEc
Confidence 11 011111 1333 5778889999999999997754432221 01122333 111111
Q ss_pred ------------------EeCCcEEEEECCCCceeeeecCCCCC------CCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 473 ------------------IHEGQIDVYEAPTLNHTSQLVPDKMD------LPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 473 ------------------~~d~~i~iwd~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
..+|.+.-.|..+|+.+-+.....+. .+...-.....+..|+.++.||.|+.+|..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence 13567888888888877666443111 111111112356789999999999999999
Q ss_pred CCceeEEEec
Q 007306 529 TLELRCQINL 538 (608)
Q Consensus 529 ~~~~~~~~~~ 538 (608)
+|+.+.....
T Consensus 425 tG~~lW~~~~ 434 (488)
T cd00216 425 TGKELWKFRT 434 (488)
T ss_pred CCceeeEEEC
Confidence 9999988764
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.59 E-value=1.1e-06 Score=91.19 Aligned_cols=179 Identities=19% Similarity=0.245 Sum_probs=130.3
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
+..++-|+ ...+..+|+.+.+..+...-..+.|.-+ ..++ .+.+|...|+|.+-|+++.+.++++..|++.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 44566677 7888899999888877776555455433 4566 899999999999999999999999999999998754
Q ss_pred EeCCCCEEEEEcC---------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC--CEEEEEeCCcEEE
Q 007306 412 YSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--IHLLSIHEGQIDV 480 (608)
Q Consensus 412 ~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--~~l~~~~d~~i~i 480 (608)
-.|+.|++++. |.-|+|||++..+.. .+++ +..+ ..-+.|+|.- +..+++..|+..+
T Consensus 225 --v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~-~~~~-------P~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 225 --VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQ-FPYG-------PQFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred --ccCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcc-cccC-------chhhhhcccccceEEEEecccceee
Confidence 46888988875 566899999984432 2233 2221 2346778863 3344478899999
Q ss_pred EECCC-Cce-eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 481 YEAPT-LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 481 wd~~~-~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
-|..+ +.+ ...+........+..+++|++|+.++.|..+|.|.+|.
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99432 122 22222222245599999999999999999999999998
No 316
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=2.5e-07 Score=59.11 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=36.8
Q ss_pred CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEE
Q 007306 394 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432 (608)
Q Consensus 394 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 432 (608)
++++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.6e-05 Score=75.24 Aligned_cols=240 Identities=19% Similarity=0.094 Sum_probs=142.3
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc
Q 007306 322 DPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK 395 (608)
Q Consensus 322 ~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~ 395 (608)
++...|..++|+ ..++..++ +..|+|.|+++..++..+..+ ..+++++|.-|. +|..|...|.|.+||++..+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 688899999999 33788888 999999999999999998877 789999999888 88999999999999998653
Q ss_pred eE-EEeeC--ccccEEEEEE------eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC
Q 007306 396 TK-AKLKG--HQNRITCLAY------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 466 (608)
Q Consensus 396 ~~-~~~~~--~~~~v~~~~~------~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 466 (608)
-. ..+.+ ...+|..++. .+.|.+++..+.+ ...|.+..... .... +.+-..+ +...+++..+.
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~---~~p~-vlele~p--G~cismqy~~~ 341 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE---CLPC-VLELEPP--GICISMQYHGV 341 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc---CCCc-ccccCCC--cceeeeeecCc
Confidence 22 22222 1234444332 2334455544433 34565543211 0111 1111111 56667777776
Q ss_pred CCEEEEE--eCC---cEE---E-EECCCCceeeeecCCCCCC---C--eEEEEE-ecCCCEEEE-EEcCCeEEEEeCCCC
Q 007306 467 QIHLLSI--HEG---QID---V-YEAPTLNHTSQLVPDKMDL---P--ITYATY-SCDGKCIYV-SCKSGHVKVFDTSTL 530 (608)
Q Consensus 467 ~~~l~~~--~d~---~i~---i-wd~~~~~~~~~~~~~~~~~---~--v~~~~~-s~~~~~l~s-g~~dg~i~iwd~~~~ 530 (608)
.+.++.+ .+. +++ . -|..+|.++-......... . -...-+ .++.++|+. |...+.+.+||..++
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 6666653 211 111 1 1222344332221110000 0 001111 345566554 445589999999999
Q ss_pred ceeEEEeceeeccCCCcccccccEEEEEecCC-CCEEEEEeCCCcEEEEeCCC
Q 007306 531 ELRCQINLTAYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 531 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d-~~~las~s~Dg~v~iW~~~~ 582 (608)
+...++.. +.++. +++....+ +.+|++-. |..++|+..++
T Consensus 422 evvQ~l~~---------~epv~--Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 422 EVVQTLAL---------SEPVL--DICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred heeeeccc---------Cccee--ecceeecCCcchhhhee-cceEEEEecCC
Confidence 99998875 33344 55544433 45677665 55789987654
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=7.2e-06 Score=84.86 Aligned_cols=208 Identities=13% Similarity=0.087 Sum_probs=132.0
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcccc-EEEEEEeCCCCEEEEEcCCC-----cEEEEECCCCceec-c
Q 007306 370 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLC-S 441 (608)
Q Consensus 370 ~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~-~ 441 (608)
+|++.+ .++.|+.+|.|.+++-. -+.++.++.+... |..+....+..+|++.+.|+ .+++||++.-+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 367777 99999999999888732 3444677776666 44443333446888877765 48999997643322 2
Q ss_pred ccee--eeeccCCC-CccceEEEEEcCCCCEEEEE-eCCcEEEEECC--CCceeeeecCCCCCCCeEEEEEecCCCEEEE
Q 007306 442 KFLH--SFQTGLVP-ETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP--TLNHTSQLVPDKMDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 442 ~~~~--~~~~~~~~-~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 515 (608)
.++. .+.....| ...++.+++.+.+-+.+++| .+|.|..+.-+ ..+-.+....+....+|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 2331 12211111 12688999999998889998 78888888532 1111111112223889999999999988554
Q ss_pred EEcCCeEEEEeCCCCce-eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 516 SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 516 g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
...-..|.+|.+....+ ...+. +++.. ..|.++++ ....+++|+. ..|.+|+....++.|...
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~--lnCss~~~-~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLD--------NNGIS--LNCSSFSD-GTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEecceeEEEEecCCCcceeeec--------cCCcc--ceeeecCC-CCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 44567799999984331 22222 22333 44888888 3444666554 469999998877766554
No 319
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=0.00047 Score=61.81 Aligned_cols=147 Identities=12% Similarity=0.071 Sum_probs=95.8
Q ss_pred ecCCCC-eEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 218 SLPDAD-SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 218 ~s~dg~-~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
..+|.+ +++.|+..+.+.--|... +.+..-.+ -..+|-+-+.- -|++++.|...|.+.+.+.+++.+
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~s----G~~~We~i----lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~--- 85 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQS----GNLIWEAI----LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ--- 85 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCC----CcEEeehh----hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh---
Confidence 334444 667788888888888874 33332211 23445444443 577899999999999999888876
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD 375 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 375 (608)
+|+...-..++ .--.+++++..+..++ |++....|..+..++...+...+...+-++.|-.
T Consensus 86 ---------~w~f~~~~~vk---------~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~ 147 (354)
T KOG4649|consen 86 ---------IWNFVILETVK---------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGD 147 (354)
T ss_pred ---------eeeeeehhhhc---------cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCC
Confidence 67643222111 1112345588899999 9999999999999998887666555556666733
Q ss_pred -eEEEEeCCCcEEEEeCCCC
Q 007306 376 -LFAFGFDDSSILVHCPCTK 394 (608)
Q Consensus 376 -~l~~~~~d~~i~vwd~~~~ 394 (608)
.|.++...|.|.--...++
T Consensus 148 ~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 148 GSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ceEEEEeccceEEEEccCCC
Confidence 5555666666655555444
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.1e-06 Score=85.97 Aligned_cols=185 Identities=14% Similarity=0.195 Sum_probs=130.7
Q ss_pred CCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 323 PKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 323 ~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
....++|++++++.|+.|. +|.|++.+.. |.. .+...|... ..+| ++++|+.||+|.|-.+.+.+....+
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 3466788888899999999 9999999876 333 333334332 5678 9999999999999999888877766
Q ss_pred eCccccEEEEEEeCC-----CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeC
Q 007306 401 KGHQNRITCLAYSLS-----LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE 475 (608)
Q Consensus 401 ~~~~~~v~~~~~~~~-----~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d 475 (608)
. ...++.+++++|+ .+.+++|+.-| +.++.-+-... ...+ ...... ++|.++.|. |.++|-..|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--k~~v--~l~~~e---G~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--KDSV--VLSEGE---GPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--ccce--eeecCc---cceEEEEec--CcEEEEecC
Confidence 5 4568999999997 56789999888 76664321110 1111 112222 789999998 678888888
Q ss_pred CcEEEEECCCCceeeeecCCCC----CCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 476 GQIDVYEAPTLNHTSQLVPDKM----DLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
-.|++||+.+++.+..+..+.. ......+.|.++.+ |+.| ...+|+|..+.
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 8999999998887776655321 22345677876655 4444 34568888777
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00018 Score=77.82 Aligned_cols=196 Identities=13% Similarity=0.198 Sum_probs=127.2
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeC----CCC-
Q 007306 324 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCP----CTK- 394 (608)
Q Consensus 324 ~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~----~~~- 394 (608)
+..|.++.|. ++.++.+. +|.|.+-|.++.... ....-..+|.+++|+||+ .++..+..+++.+.+- -.-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4678899988 55666666 899998888764432 222346789999999999 8777777777766432 111
Q ss_pred ------------------ceEEEeeCcc---------------------ccEEEEEEeCCCCEEEEEc----CC-CcEEE
Q 007306 395 ------------------KTKAKLKGHQ---------------------NRITCLAYSLSLNVLVSSG----AD-AQLCV 430 (608)
Q Consensus 395 ------------------~~~~~~~~~~---------------------~~v~~~~~~~~~~~l~s~~----~d-~~i~v 430 (608)
+.-..|+|.. +.=++|.|--||+++++.. .+ +.|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1111222111 1123588999999988732 23 79999
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E---eCCcEEEEECCCCceeeeecC--CCCCCCeEEE
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHTSQLVP--DKMDLPITYA 504 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~---~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~ 504 (608)
||-+. . ++.+..... +.-.+++|-|.|..+++ . +|+.|.+|.- +|-....|.. +.....+..+
T Consensus 227 ~drEg-~------Lns~se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 227 YDREG-A------LNSTSEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred ecccc-h------hhcccCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhee
Confidence 99872 2 111111111 34458999999999998 2 5678999986 3333232222 1224459999
Q ss_pred EEecCCCEEEE---EEcCCeEEEEeCCCCc
Q 007306 505 TYSCDGKCIYV---SCKSGHVKVFDTSTLE 531 (608)
Q Consensus 505 ~~s~~~~~l~s---g~~dg~i~iwd~~~~~ 531 (608)
+|+.++..|++ ......|++|.+.+..
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCeE
Confidence 99999999997 5555669999998765
No 322
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=7.3e-06 Score=84.21 Aligned_cols=187 Identities=18% Similarity=0.247 Sum_probs=126.1
Q ss_pred CeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccce
Q 007306 365 IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 444 (608)
Q Consensus 365 ~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 444 (608)
.++|++++.. .|+.|+.+|.|++++... .. .+...|... ..+|.++++++.||+|.+-.+-+++......+
T Consensus 41 ~is~~av~~~-~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVHDK-FFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhhcc-eeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence 3455555433 899999999999999764 33 333334443 56899999999999999998887553322222
Q ss_pred eeeeccCCCCccceEEEEEcCC-----CCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 445 HSFQTGLVPETTIVNHIQFHPD-----QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 445 ~~~~~~~~~~~~~v~~v~~sp~-----~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
+ -++.+++++|+ .+.+++| .-| +.++.-.-.............++|.++.|. |+++|-++.
T Consensus 112 ~----------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand 178 (846)
T KOG2066|consen 112 K----------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAND 178 (846)
T ss_pred C----------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecC
Confidence 2 47899999998 4667774 455 777764321111122222348999999996 778888876
Q ss_pred CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 519 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 519 dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+| |+|||+.+++.+..+.+.. +..........+.|.+ ...|+.|= ..+|+|..+.
T Consensus 179 ~G-v~vyd~~~~~~l~~i~~p~----~~~R~e~fpphl~W~~--~~~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLTNIPPPS----QSVRPELFPPHLHWQD--EDRLVIGW-GDSVKICSIK 233 (846)
T ss_pred CC-cEEEeccccceeeccCCCC----CCCCcccCCCceEecC--CCeEEEec-CCeEEEEEEe
Confidence 66 9999999999888776543 1112234445788988 35666664 4478888887
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=7.3e-05 Score=80.63 Aligned_cols=239 Identities=13% Similarity=0.125 Sum_probs=135.6
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
+.+.|..++..++.+..+|.|.+-|.++. .-++... -.+.|.+++||||++.++..+..+++.+-..
T Consensus 72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~------vd~GI~aaswS~Dee~l~liT~~~tll~mT~----- 138 (1265)
T KOG1920|consen 72 VSVQFLADTNSICVITALGDIILVDPETL--ELEIVGN------VDNGISAASWSPDEELLALITGRQTLLFMTK----- 138 (1265)
T ss_pred EEEEEecccceEEEEecCCcEEEEccccc--ceeeeee------ccCceEEEeecCCCcEEEEEeCCcEEEEEec-----
Confidence 33478889999999999999999887641 1122221 4779999999999999999988888765321
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCCCce-eeEecCCCCCeEEEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLETFQT-LATFANPPPIATYFIL 371 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~ 371 (608)
.|++-.-+.+.... ...+..-.+-|- ...=+.|+.|.....+...... ......+.. =+.+.|
T Consensus 139 ------------~f~~i~E~~L~~d~--~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~-~~~IsW 203 (1265)
T KOG1920|consen 139 ------------DFEPIAEKPLDADD--ERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH-KTSISW 203 (1265)
T ss_pred ------------cccchhcccccccc--ccccccceecccccceeeecchhhhcccccccccccccchhhccC-CceEEE
Confidence 11111111000000 011122223333 1122222222211111110000 010111222 237899
Q ss_pred cCCC-eEEEEe-----CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEc---CCCcEEEEECCCCceeccc
Q 007306 372 LPQD-LFAFGF-----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 372 ~~~~-~l~~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~ 442 (608)
.-|| ++++.. ..+.|++||.. |..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+.-+. ...
T Consensus 204 RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~f 281 (1265)
T KOG1920|consen 204 RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GEF 281 (1265)
T ss_pred ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-ccc
Confidence 9999 887732 23799999977 543332222334446789999999988754 456788887654221 112
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEE---EeCC-cEEEEECCCCc
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS---IHEG-QIDVYEAPTLN 487 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~---~~d~-~i~iwd~~~~~ 487 (608)
.+. .+... .++..++|+.++..|++ ...+ .|++|-+.+..
T Consensus 282 ~l~-~p~de----~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 282 VLP-FPLDE----KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccC-Ccccc----cchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 222 22222 34899999999999997 3344 49999987654
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=3.5e-05 Score=79.20 Aligned_cols=187 Identities=10% Similarity=0.015 Sum_probs=115.2
Q ss_pred CCEEEEEe--CCcEEEEEcCCCceeeEecCC-CCCeE-------------------EEEEcCCC-eE-EEEeCCCcEEEE
Q 007306 334 GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIAT-------------------YFILLPQD-LF-AFGFDDSSILVH 389 (608)
Q Consensus 334 ~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~-~~~v~-------------------~~~~~~~~-~l-~~~~~d~~i~vw 389 (608)
|++|+.-. +..|-..++...++-+.+.-+ ...+. .+-++||| .+ .+.-..+.+.+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 67777776 466766777665554444311 11111 12234566 33 233344567788
Q ss_pred eCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC----------------------------------------CCcEE
Q 007306 390 CPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA----------------------------------------DAQLC 429 (608)
Q Consensus 390 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----------------------------------------d~~i~ 429 (608)
|..+.+...++.- .+....++++|+|+++++.+. ++.|.
T Consensus 221 D~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~ 299 (635)
T PRK02888 221 DAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVP 299 (635)
T ss_pred ECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEE
Confidence 8887776655543 224456778888888776651 23455
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCce------------eeeecCC
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH------------TSQLVPD 495 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~------------~~~~~~~ 495 (608)
+.|..+........+..++.+ .....+.++|||+++++ + .++++.|+|+.+.+. +.+...
T Consensus 300 VID~~t~~~~~~~v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred EEECCccccCCcceEEEEECC-----CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 666554100001223323444 34568999999999998 4 689999999987553 333332
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 496 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 496 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
.......+|+++|....+-.-|..|..|++.+
T Consensus 374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33445688999999888888899999999886
No 325
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.41 E-value=9.3e-07 Score=56.39 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=36.0
Q ss_pred CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 007306 353 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 390 (608)
Q Consensus 353 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd 390 (608)
|+++.++.+|...|++++|+|++ .|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999 999999999999997
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=0.00013 Score=73.27 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=80.3
Q ss_pred CCeEEEEEe---CCEEEEEe-----CCc----EEEEEcCCCceee--Eec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEE
Q 007306 325 DSISCFALR---GSHLFSAS-----GGK----ISIFSLETFQTLA--TFA-NPPPIATYFILLPQD-LFAFGFDDSSILV 388 (608)
Q Consensus 325 ~~v~~v~~s---~~~l~s~~-----d~~----i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~v 388 (608)
....++.|+ +..+.+.. +|. -.+|++..++..+ ... .....|.|++++|+. .++.|+.||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 344677787 55565543 343 3466665544322 111 567789999999999 9999999999999
Q ss_pred EeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC
Q 007306 389 HCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 389 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 435 (608)
||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 998766333 223445678999999999999999999999999875
No 327
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=8.1e-05 Score=75.50 Aligned_cols=222 Identities=10% Similarity=0.056 Sum_probs=113.6
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
.......++++|+|++++. +.||...|+....... ...+.-....|. .+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~----------------------------k~~G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN----------------------------KAFGSGLSFVWSSRNR 81 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE----------------------------EEEEE-SEEEE-TSSE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc----------------------------cccCceeEEEEecCcc
Confidence 3446788999999998877 5567777765222211 012333456777 566
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
+|+-. .++|.++.--+.+....+... ..+..+-. | .|...+.+ .|.+||..+++.+..+... +|..+.|++
T Consensus 82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~ 154 (443)
T PF04053_consen 82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD 154 (443)
T ss_dssp EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence 77777 888999743333333333322 12333322 7 66666544 8999999999999988743 389999999
Q ss_pred CCCEEEEEcCCCcEEEEECCCC------ceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCce
Q 007306 415 SLNVLVSSGADAQLCVWDAVGW------KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 488 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~ 488 (608)
+|++++..+.+ .+.+++.+.. +......+..+.+-. ..|.+.+|..+ -++.+.. +.++.+ ..|+.
T Consensus 155 ~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d-~fiYtT~-~~lkYl--~~Ge~ 225 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED-CFIYTTS-NHLKYL--VNGET 225 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT-EEEEE-T-TEEEEE--ETTEE
T ss_pred CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC-EEEEEcC-CeEEEE--EcCCc
Confidence 99999988754 6777765442 000000222111101 46788888876 3333333 366663 23432
Q ss_pred --eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 489 --TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 489 --~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
+..+ ..++.=+.+.+..+.++....|+.|..+.+..
T Consensus 226 ~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 226 GIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2222 45677777778777888888888888887664
No 328
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.39 E-value=0.0017 Score=68.28 Aligned_cols=245 Identities=16% Similarity=0.123 Sum_probs=143.1
Q ss_pred CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeE-EEEEeCCEEEEEe-------CC
Q 007306 272 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GG 343 (608)
Q Consensus 272 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~l~s~~-------d~ 343 (608)
..++.++.|+.+.-.|..+++. +|+....... ....+. .-...+..++.+. +|
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~------------~W~~~~~~~~-------~~~~~tssP~v~~g~Vivg~~~~~~~~~G 181 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKV------------VWSKKNGDYK-------AGYTITAAPLVVKGKVITGISGGEFGVRG 181 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCE------------Eeeccccccc-------ccccccCCcEEECCEEEEeecccccCCCc
Confidence 4577788899999888888886 7775432111 001111 1112244444443 47
Q ss_pred cEEEEEcCCCceeeEecCCCC-------------------------------CeE-EEEEcCCC-eEEEEeC-----CC-
Q 007306 344 KISIFSLETFQTLATFANPPP-------------------------------IAT-YFILLPQD-LFAFGFD-----DS- 384 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~-------------------------------~v~-~~~~~~~~-~l~~~~~-----d~- 384 (608)
.|.-+|.++|+.+..+..-.. .++ .+++.|.. +++.+.. ++
T Consensus 182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred EEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Confidence 899999999998877542111 111 23566655 4544431 12
Q ss_pred ----------cEEEEeCCCCceEEEeeCccccEEE---------EEEeCCCC---EEEEEcCCCcEEEEECCCCceeccc
Q 007306 385 ----------SILVHCPCTKKTKAKLKGHQNRITC---------LAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 385 ----------~i~vwd~~~~~~~~~~~~~~~~v~~---------~~~~~~~~---~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
+|.-.|+++|+....++.....+.. +....+|+ .++.+..+|.+++.|-++++.+...
T Consensus 262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccc
Confidence 6788899999998877652222221 22234666 6788999999999999998764211
Q ss_pred ce---eeeec------cC---------------C-----CC-ccc--eEEEEEcCCCCEEEE-EeC--------------
Q 007306 443 FL---HSFQT------GL---------------V-----PE-TTI--VNHIQFHPDQIHLLS-IHE-------------- 475 (608)
Q Consensus 443 ~~---~~~~~------~~---------------~-----~~-~~~--v~~v~~sp~~~~l~~-~~d-------------- 475 (608)
.. ..... +. . |. .+. =..++++|+..++++ ..+
T Consensus 342 ~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~ 421 (527)
T TIGR03075 342 PFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKK 421 (527)
T ss_pred cccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCC
Confidence 00 00000 00 0 00 000 012566676655554 211
Q ss_pred -------------------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 476 -------------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 476 -------------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
+.|.-+|+.+|+..-+.... .+...-.+.-.+..++.++.||.++.+|.++|+.+..+
T Consensus 422 g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~---~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 422 GAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED---FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC---CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 35778888888877665432 11111112235567788888999999999999999887
Q ss_pred ec
Q 007306 537 NL 538 (608)
Q Consensus 537 ~~ 538 (608)
..
T Consensus 499 ~~ 500 (527)
T TIGR03075 499 KT 500 (527)
T ss_pred eC
Confidence 64
No 329
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.38 E-value=0.001 Score=69.93 Aligned_cols=295 Identities=13% Similarity=0.017 Sum_probs=161.0
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 349 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd 349 (608)
+..++.++.++.|.-.|..+++. +|...................-..+++.+..++.++ |+.+.-.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~------------lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALD 136 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE------------LWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALD 136 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce------------eeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEE
Confidence 44677778888888888888876 776433211000000000000112344555666666 99999999
Q ss_pred cCCCceeeEecCCCC----CeEEEEEcCCCeEEEEe------CCCcEEEEeCCCCceEEEeeCccc--------------
Q 007306 350 LETFQTLATFANPPP----IATYFILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQN-------------- 405 (608)
Q Consensus 350 ~~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~-------------- 405 (608)
..+|+.+........ .+++--.-.++.++++. .+|.|.-+|..+|+.+..+..-..
T Consensus 137 a~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~ 216 (527)
T TIGR03075 137 AKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGG 216 (527)
T ss_pred CCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccc
Confidence 999999887653211 11111111144444443 268999999999988866533110
Q ss_pred -----------------cEE-EEEEeCCCCEEEEEcCC-----C-----------cEEEEECCCCceecccceeeeecc-
Q 007306 406 -----------------RIT-CLAYSLSLNVLVSSGAD-----A-----------QLCVWDAVGWKKLCSKFLHSFQTG- 450 (608)
Q Consensus 406 -----------------~v~-~~~~~~~~~~l~s~~~d-----~-----------~i~vwd~~~~~~~~~~~~~~~~~~- 450 (608)
.+. .+++.|...++..+..+ + .|.-.|+++++..-.... +...
T Consensus 217 ~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~--~~~D~ 294 (527)
T TIGR03075 217 EPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT--TPHDE 294 (527)
T ss_pred ccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC--CCCCC
Confidence 111 23556655555555422 1 566677777765432111 1100
Q ss_pred --CCCCccceEEEEEcCCCC---EEEE-EeCCcEEEEECCCCceeeeecCCC----------CC-CC-------------
Q 007306 451 --LVPETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK----------MD-LP------------- 500 (608)
Q Consensus 451 --~~~~~~~v~~v~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~----------~~-~~------------- 500 (608)
... .....-+.+..+|+ .++. ..+|.+++.|.++|+.+....... .. .+
T Consensus 295 wD~d~-~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~ 373 (527)
T TIGR03075 295 WDYDG-VNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKK 373 (527)
T ss_pred ccccC-CCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCC
Confidence 000 01112233335665 4444 489999999999998862210000 00 00
Q ss_pred ---------------eEEEEEecCCCEEEEEEcC---------------------------------CeEEEEeCCCCce
Q 007306 501 ---------------ITYATYSCDGKCIYVSCKS---------------------------------GHVKVFDTSTLEL 532 (608)
Q Consensus 501 ---------------v~~~~~s~~~~~l~sg~~d---------------------------------g~i~iwd~~~~~~ 532 (608)
-..++++|+..+++....+ |.|.-+|+.+|+.
T Consensus 374 ~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~ 453 (527)
T TIGR03075 374 GKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKI 453 (527)
T ss_pred CCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCce
Confidence 0125666666655543322 4577788888887
Q ss_pred eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccCCC
Q 007306 533 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 533 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~ 592 (608)
........ ......+.- .+.+++.++.||.++.+|..+|+..|....+
T Consensus 454 ~W~~~~~~---------p~~~~~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 454 VWEHKEDF---------PLWGGVLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEecCCC---------CCCCcceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 77664320 000001221 3457777888999999999999999987654
No 330
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.36 E-value=0.0019 Score=62.90 Aligned_cols=281 Identities=14% Similarity=0.093 Sum_probs=134.0
Q ss_pred EEEeeCCCEEEEEeC-CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe
Q 007306 265 LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS 341 (608)
Q Consensus 265 ~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~ 341 (608)
=+|.+||+.|+.++. ||.-.+| +.|..+++..+..-.. .........+ ++.++-..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly-------------------~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLY-------------------LLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEE-------------------EEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceE-------------------EEEcccCEEEECccCC--CCCccceEEecCCCeEEEEE
Confidence 357889977776655 6666655 4566666666644311 1111123334 66665555
Q ss_pred -CCcEEEEEcCCCceeeEecCCCCCeEEEEEc--CCCeEEEEeC-----------------------CCcEEEEeCCCCc
Q 007306 342 -GGKISIFSLETFQTLATFANPPPIATYFILL--PQDLFAFGFD-----------------------DSSILVHCPCTKK 395 (608)
Q Consensus 342 -d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~-----------------------d~~i~vwd~~~~~ 395 (608)
+..++-.|+.+.+....+..+..-+....|. .|+..++|.. ...|.-.|+.+|+
T Consensus 100 ~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~ 179 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE 179 (386)
T ss_dssp TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence 6788899999988777777666666555664 3343333221 1346666888887
Q ss_pred eEEEeeCccccEEEEEEeCCCCE-EEEEcC---CCc-EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 396 TKAKLKGHQNRITCLAYSLSLNV-LVSSGA---DAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 396 ~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~---d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
....+. -...+.-+.|+|.... |+.+-. +.. -++|-+++.... .+++.....+ ..+..=-|.|||..|
T Consensus 180 ~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~-----e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 180 RKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEG-----ESVGHEFWVPDGSTI 252 (386)
T ss_dssp EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT-----EEEEEEEE-TTSS-E
T ss_pred eeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCC-----cccccccccCCCCEE
Confidence 665554 4456778889995544 444322 221 245544432111 1222211111 345666789999887
Q ss_pred EE-Ee-----CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC----------------CeEEEEeCC
Q 007306 471 LS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----------------GHVKVFDTS 528 (608)
Q Consensus 471 ~~-~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----------------g~i~iwd~~ 528 (608)
.- +. +..|.-+|..+++...... .......-.++||++++-=+.| --|+++++.
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 75 42 3357778888876543222 2345566778999988754433 257778888
Q ss_pred CCceeEEEecee---eccCCCcccccccEEEEEecCCCCE-EEEEeCCCcEEEEeCC
Q 007306 529 TLELRCQINLTA---YAQPGTISLELYPLVIAAHPLEPNR-IALGLTNGRVHVIEPL 581 (608)
Q Consensus 529 ~~~~~~~~~~~~---~~~~g~~~~~v~~~~v~~sp~d~~~-las~s~Dg~v~iW~~~ 581 (608)
.+.... +..+. ....|+.. +.-....|+| |+++ |.++...|...||-+.
T Consensus 329 ~~~~~~-l~~h~~sw~v~~~~~q--~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 329 AGRFRK-LARHDTSWKVLDGDRQ--VTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTEEEE-EEE-------BTTBSS--TT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred cCceee-eeeccCcceeecCCCc--cCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence 776543 22221 11223211 1223689999 5655 4555567877777553
No 331
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.33 E-value=0.00096 Score=63.69 Aligned_cols=243 Identities=13% Similarity=0.075 Sum_probs=131.4
Q ss_pred eecCCCCeEEEee----------cCCeEEEeeccCCCCCCceeeEeecCC---CCCCcEEEEEEeeCCCEEEEEeCCCcE
Q 007306 217 TSLPDADSAVCAK----------SLEKSVNLKLQLINEPSECRTLLLPDN---SFGGRVVRLIYSHSGDFLVALTQTATH 283 (608)
Q Consensus 217 ~~s~dg~~l~~~~----------~d~~i~iWd~~~~~~~~~~~~~~l~~~---~h~~~V~~~~fsp~g~~l~s~s~dg~i 283 (608)
..||||+.+++++ ..-.|.+||..+.....+ +.||.. .........++|.||++++....
T Consensus 42 ~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E---I~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~---- 114 (342)
T PF06433_consen 42 ALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE---IEIPPKPRAQVVPYKNMFALSADGKFLYVQNF---- 114 (342)
T ss_dssp EE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE---EEETTS-B--BS--GGGEEE-TTSSEEEEEEE----
T ss_pred eECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce---EecCCcchheecccccceEEccCCcEEEEEcc----
Confidence 5899999988753 345599999986322222 234431 00112233567777776655433
Q ss_pred EEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcC-CCceeeEe-
Q 007306 284 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLE-TFQTLATF- 359 (608)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~-~~~~~~~~- 359 (608)
.. +.++.+.|...++++...- ...+..+--+ +.-+.+-| ||.+.-..+. .|+..+..
T Consensus 115 -----TP----------a~SVtVVDl~~~kvv~ei~----~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 115 -----TP----------ATSVTVVDLAAKKVVGEID----TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp -----SS----------SEEEEEEETTTTEEEEEEE----GTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred -----CC----------CCeEEEEECCCCceeeeec----CCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 22 1223455665555544321 1122222222 44555555 9999988887 45554322
Q ss_pred ---cCCCCCe-EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE--EEeeCc----------cccEEEEEEeCCCCEEEEE
Q 007306 360 ---ANPPPIA-TYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKLKGH----------QNRITCLAYSLSLNVLVSS 422 (608)
Q Consensus 360 ---~~~~~~v-~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~--~~~~~~----------~~~v~~~~~~~~~~~l~s~ 422 (608)
.....++ ..-++...+ .++.-+.+|.|+--|+...... ..+..- .+.-.-+++++..+.|.+.
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 1222222 233444555 6666788999998888765422 222110 1222346777755554432
Q ss_pred c---CC-------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC-EEEE-E-eCCcEEEEECCCCcee
Q 007306 423 G---AD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-I-HEGQIDVYEAPTLNHT 489 (608)
Q Consensus 423 ~---~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~-~-~d~~i~iwd~~~~~~~ 489 (608)
- .+ ..|.++|+.+.++.....+. .++.+|.++.+.+ +|++ . .++.+.+||..+|+.+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~----------~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE----------HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE----------EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeCC----------CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 1 11 24888899996655544444 4677999999876 5544 4 5788999999999999
Q ss_pred eeecCC
Q 007306 490 SQLVPD 495 (608)
Q Consensus 490 ~~~~~~ 495 (608)
+++..-
T Consensus 326 ~~~~~l 331 (342)
T PF06433_consen 326 RSIEQL 331 (342)
T ss_dssp EEE---
T ss_pred eehhcc
Confidence 988653
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.00016 Score=73.76 Aligned_cols=279 Identities=11% Similarity=0.089 Sum_probs=151.0
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|...|.--+++..+++++.|+.-|.+.+|+-..+... .. ..++..+.+..+..+ ..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~---------------------~~-~~~~~~~~~~~~~vs~~e~ 89 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR---------------------KL-KNEGATGITCVRSVSSVEY 89 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhh---------------------cc-cccCccceEEEEEecchhH
Confidence 5667777778889999999999999998876655431 11 111223344445556 55
Q ss_pred EEEEEe-CCcEEEEEcCCCceee-----Ee-cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc----eEEEeeCc
Q 007306 336 HLFSAS-GGKISIFSLETFQTLA-----TF-ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK----TKAKLKGH 403 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~-----~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~----~~~~~~~~ 403 (608)
++|.|+ .|.|.++-++.+..-. .. +.|...|+|++|++++ .+++|...|.|..-.+.+.. ..+.+-..
T Consensus 90 lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 90 LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 666666 7889998886633211 11 1467899999999999 99999999999988877621 11122223
Q ss_pred cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCcc-ceEEEEEcCC----CCEEEEEeCCcE
Q 007306 404 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPD----QIHLLSIHEGQI 478 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~----~~~l~~~~d~~i 478 (608)
.+.|-.+... ++..|++... .-.+++.+.... +.+. ..+..+ .-...+|-|. .+-.+.+..-..
T Consensus 170 ds~IVQlD~~-q~~LLVStl~--r~~Lc~tE~eti---~QIG-----~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~ 238 (726)
T KOG3621|consen 170 DSEIVQLDYL-QSYLLVSTLT--RCILCQTEAETI---TQIG-----KKPRKSLIDFGACFFPGQCKAQKPQIYCARPGL 238 (726)
T ss_pred CcceEEeecc-cceehHhhhh--hhheeecchhHH---HHhc-----CCCcCCccccceEEeeccccCCCceEEEecCCC
Confidence 4566666554 3334443332 223555544211 1111 110001 1223445443 233333333446
Q ss_pred EEEECC-CCceeeeecCCC---------------------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 479 DVYEAP-TLNHTSQLVPDK---------------------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 479 ~iwd~~-~~~~~~~~~~~~---------------------------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
|+|..+ .|+.+++..... +.-....+.+- .+..+++-++-| |+|+|..+.
T Consensus 239 RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~ 316 (726)
T KOG3621|consen 239 RLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNS 316 (726)
T ss_pred ceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccc
Confidence 777654 344444432110 00001111111 122344444444 889998887
Q ss_pred ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 531 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 531 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
+.+.-... .+.|- .|+. .++-|..-..|+.+++..+.+.+.
T Consensus 317 ~v~l~se~---------~~DI~--dVs~---~~neiFvL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 317 QVYLWSEG---------GHDIL--DVSH---CGNEIFVLNLDRGLKVESVASRQR 357 (726)
T ss_pred eEEEeecC---------CCcee--EEee---cCceEEEEecCCceeEEEeehhHH
Confidence 65544321 22232 5554 345566666677788887776553
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.28 E-value=0.00042 Score=69.38 Aligned_cols=277 Identities=10% Similarity=0.102 Sum_probs=142.6
Q ss_pred cEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEE
Q 007306 261 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSA 340 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~ 340 (608)
.|+.+.|+++..-|+.|...|.|.||.+..++.... ...+.-.|.. ...+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~----~~~~~~~~~~------------------~~~~~------~ 54 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN----REQPPDLDYN------------------FRRFS------L 54 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE----------------------------------------S--------G
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc----cCCCcccCcc------------------ccccc------c
Confidence 588999999988899999999999998866543100 0000000000 00000 0
Q ss_pred eCCcEEEEEcCC---------CceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEe--eC------c
Q 007306 341 SGGKISIFSLET---------FQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KG------H 403 (608)
Q Consensus 341 ~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~------~ 403 (608)
.++.-.+-|+.. ..+...+....++|++++.+.-|++++|+.+|.+.|.|++....+..- .. .
T Consensus 55 ~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~ 134 (395)
T PF08596_consen 55 NNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSS 134 (395)
T ss_dssp GGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS-
T ss_pred cCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeecccccccccccc
Confidence 000111222211 123334455688999999987779999999999999999987776542 11 2
Q ss_pred cccEEEEEEeC-----CC---CEEEEEcCCCcEEEEECCC-Cce-ecccceeeeeccCCCCccceEEEE-EcCC-C----
Q 007306 404 QNRITCLAYSL-----SL---NVLVSSGADAQLCVWDAVG-WKK-LCSKFLHSFQTGLVPETTIVNHIQ-FHPD-Q---- 467 (608)
Q Consensus 404 ~~~v~~~~~~~-----~~---~~l~s~~~d~~i~vwd~~~-~~~-~~~~~~~~~~~~~~~~~~~v~~v~-~sp~-~---- 467 (608)
...|+++.|.. |+ -.+++|...|.+.+|.+.- ... ....... ....+. +.|..+. |+.+ |
T Consensus 135 ~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~-~~~~~~---~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 135 SSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAG-ATTNHD---SPILSIIPINADTGESAL 210 (395)
T ss_dssp ---EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEE-EE--SS-------EEEEEETTT--B-B
T ss_pred ccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEee-ccccCC---CceEEEEEEECCCCCccc
Confidence 34678888863 33 3588899999999998752 111 1111111 111222 3444444 3221 1
Q ss_pred ----------------CEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEE-----ecCCCEEEEEEcCCeEEEEe
Q 007306 468 ----------------IHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-----SCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 468 ----------------~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~~l~sg~~dg~i~iwd 526 (608)
.+++++.+..++++...+.+....... .......+++ ...+..|++-..+|.|+++.
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 245557889999999988877665542 1233344455 23567788888999999999
Q ss_pred CCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEe
Q 007306 527 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 579 (608)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~ 579 (608)
+..-+.+........ .+.-+....++++ +|+.++-.+.. .+.++.
T Consensus 289 LP~Lkei~~~~l~~~------~d~~~~~~ssis~-~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 289 LPSLKEIKSVSLPPP------LDSRRLSSSSISR-NGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp TTT--EEEEEE-SS---------HHHHTT-EE-T-TS-EEEE-SSS-EEEEEE
T ss_pred CCCchHhhcccCCCc------cccccccccEECC-CCCEEEEeCcc-cEEEEE
Confidence 999888877764311 0111122566777 68877666543 333333
No 334
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=5.4e-05 Score=71.78 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=131.5
Q ss_pred EEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCC-EEEE
Q 007306 345 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVS 421 (608)
Q Consensus 345 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s 421 (608)
+++.+..+.+....+..+...|..++|+|.. ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-|.. ++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 5556655666666666788899999999988 7899999999999999999999888877 7899999998664 5667
Q ss_pred EcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE------cCCCCEEEEEeCCcEEEEECCC--Cceeeeec
Q 007306 422 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF------HPDQIHLLSIHEGQIDVYEAPT--LNHTSQLV 493 (608)
Q Consensus 422 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------sp~~~~l~~~~d~~i~iwd~~~--~~~~~~~~ 493 (608)
|..+|.|.+||++..+.. +..+.....- .+|..++. .+.|.+++.. --.+..|++.- +....+..
T Consensus 254 Gl~nG~VlvyD~R~~~~~----~~e~~a~~t~--~pv~~i~~~~~n~~f~~gglLv~~-lt~l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGP----LMELVANVTI--NPVHKIAPVQPNKIFTSGGLLVFA-LTVLQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eccCceEEEEEccCCCch----Hhhhhhhhcc--CcceeecccCccccccccceEEee-ehhhhhhhhhccccCCCcccc
Confidence 778999999999985421 1101110000 23444332 2233333332 22344555431 22222222
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCC-------eEEE-EeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCE
Q 007306 494 PDKMDLPITYATYSCDGKCIYVSCKSG-------HVKV-FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 565 (608)
Q Consensus 494 ~~~~~~~v~~~~~s~~~~~l~sg~~dg-------~i~i-wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 565 (608)
. +..+.+.++.+.+-.+.++.....+ .|-. -|-.+|..+.......+ |............+.+-+.++
T Consensus 327 l-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~---Gs~~~kl~t~~ai~~~~~nn~ 402 (463)
T KOG1645|consen 327 L-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF---GSKQTKLSTTQAIRAVEDNNY 402 (463)
T ss_pred c-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc---CCcccccccccceeccccccE
Confidence 2 1255666777776555555443321 1111 12223333333222111 110111111122222224455
Q ss_pred EEEEe-CCCcEEEEeCCCCcccccc
Q 007306 566 IALGL-TNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 566 las~s-~Dg~v~iW~~~~~~~~~~~ 589 (608)
++..+ +...+.+||+.+.+.....
T Consensus 403 iv~~gd~tn~lil~D~~s~evvQ~l 427 (463)
T KOG1645|consen 403 IVVVGDSTNELILQDPHSFEVVQTL 427 (463)
T ss_pred EEEecCCcceeEEeccchhheeeec
Confidence 55444 5578999999998865443
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=2.7e-05 Score=80.36 Aligned_cols=102 Identities=23% Similarity=0.301 Sum_probs=79.0
Q ss_pred EEe--CCEEEEEe-----CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC
Q 007306 331 ALR--GSHLFSAS-----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 402 (608)
Q Consensus 331 ~~s--~~~l~s~~-----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~ 402 (608)
.|+ ..+++.++ .|.|.||- ++|++.+... .+-.+++++|+|.. .|+.|-.-|.+.+|...+.+.-.....
T Consensus 22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 455 44555554 36777774 4566544332 12234679999999 999999999999999887776666667
Q ss_pred ccccEEEEEEeCCCCEEEEEcCCCcEEEEECC
Q 007306 403 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 434 (608)
|..+|..+.|+|+|..++++..-|.+.+|...
T Consensus 100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999999999999999999999999999876
No 336
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.24 E-value=1.6e-06 Score=49.20 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhhcHHHHHHHHHhhc
Q 007306 15 HLITLIMKFLEEENFKESLQALEQES 40 (608)
Q Consensus 15 ~ivrli~q~L~~~g~~~s~~~L~~Es 40 (608)
+|.+||++||.++||.+||.+|.+||
T Consensus 2 ~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 2 ELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 56799999999999999999999997
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.23 E-value=0.002 Score=64.55 Aligned_cols=268 Identities=18% Similarity=0.163 Sum_probs=144.1
Q ss_pred eeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcE
Q 007306 268 SHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKI 345 (608)
Q Consensus 268 sp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i 345 (608)
|||+++++.... .-+.|.- +......++|..++...+... ....+....|+ |+.++...++.|
T Consensus 1 S~d~~~~l~~~~--~~~~~r~----------s~~~~y~i~d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~~~nl 65 (353)
T PF00930_consen 1 SPDGKFVLFATN--YTKQWRH----------SFKGDYYIYDIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVRDNNL 65 (353)
T ss_dssp -TTSSEEEEEEE--EEEESSS----------EEEEEEEEEETTTTEEEESS----EETTBSEEEE-SSSTEEEEEETTEE
T ss_pred CCCCCeEEEEEC--cEEeeee----------ccceeEEEEecCCCceEECcC---CccccccceeecCCCeeEEEecCce
Confidence 688888777554 2222321 112233567777776655432 24678889999 889999999999
Q ss_pred EEEEcCCCceeeEec-CC----------------CCCeEEEEEcCCC-eEEEEeCC-C----------------------
Q 007306 346 SIFSLETFQTLATFA-NP----------------PPIATYFILLPQD-LFAFGFDD-S---------------------- 384 (608)
Q Consensus 346 ~vwd~~~~~~~~~~~-~~----------------~~~v~~~~~~~~~-~l~~~~~d-~---------------------- 384 (608)
.+++..++...+.-. +. -+.-..+.||||+ +|+....| .
T Consensus 66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~ 145 (353)
T PF00930_consen 66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVES 145 (353)
T ss_dssp EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEE
T ss_pred EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccc
Confidence 999988775443222 20 1122467899999 77654322 1
Q ss_pred -------------cEEEEeCCCCceEE-E-e---eCccccEEEEEEeCCCCEEEEEc--CC---CcEEEEECCCCceecc
Q 007306 385 -------------SILVHCPCTKKTKA-K-L---KGHQNRITCLAYSLSLNVLVSSG--AD---AQLCVWDAVGWKKLCS 441 (608)
Q Consensus 385 -------------~i~vwd~~~~~~~~-~-~---~~~~~~v~~~~~~~~~~~l~s~~--~d---~~i~vwd~~~~~~~~~ 441 (608)
.+.|+|+.+++... . . .....-+..+.|.++++.++..- .+ ..+.++|..++....
T Consensus 146 ~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~- 224 (353)
T PF00930_consen 146 IRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV- 224 (353)
T ss_dssp EE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE-
T ss_pred cccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE-
Confidence 23445555444321 1 1 12234577889999988444333 22 236667776644211
Q ss_pred cceeeeeccCCCCccceEEEEEc-CCCCEEEE-E-eCC--cEEEEECCCCceeeeecCCCCCCCeEE-EEEecCCCEEE-
Q 007306 442 KFLHSFQTGLVPETTIVNHIQFH-PDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIY- 514 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~v~~s-p~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~- 514 (608)
.......+.. ..-....+. +++..++. + .+| .|++++...+.. +.+..+ .-.|.. +.++++++.|+
T Consensus 225 -~~~e~~~~Wv---~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G--~~~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 225 -VLEETSDGWV---DVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSG--DWEVTSILGWDEDNNRIYF 297 (353)
T ss_dssp -EEEEESSSSS---SSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-S--SS-EEEEEEEECTSSEEEE
T ss_pred -EEEecCCcce---eeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccC--ceeecccceEcCCCCEEEE
Confidence 1111122221 122245554 77666654 4 555 477777765553 444432 556644 67888877665
Q ss_pred EEEcC----CeEEEEeCC-CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 515 VSCKS----GHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 515 sg~~d----g~i~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
++..+ ..|+.-++. .+. ...++.. ...-+ .++||| ++++++-..
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~-~~~LT~~--------~~~~~--~~~~Sp-dg~y~v~~~ 346 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGE-PKCLTCE--------DGDHY--SASFSP-DGKYYVDTY 346 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTE-EEESSTT--------SSTTE--EEEE-T-TSSEEEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCC-eEeccCC--------CCCce--EEEECC-CCCEEEEEE
Confidence 44442 356666777 444 4444432 11113 799999 677665543
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=0.00076 Score=67.92 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=69.8
Q ss_pred EEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEE
Q 007306 478 IDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 555 (608)
Q Consensus 478 i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 555 (608)
-.+|++...+ .+..... .....+.+++++|+...++.|+.||.|.+||...+..... .....++.
T Consensus 238 ~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------------ka~~~P~~ 304 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------------KAEFIPTL 304 (545)
T ss_pred EEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------------eecccceE
Confidence 3566664433 2222222 2478899999999999999999999999999987743322 12244668
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 556 IAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 556 v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
++||| +|.++++|+..|.+.+||+.-..
T Consensus 305 iaWHp-~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 305 IAWHP-DGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcC-CCcEEEEEcCCceEEEEEeecCc
Confidence 99999 89999999999999999987543
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.13 E-value=5.9e-05 Score=78.73 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=108.2
Q ss_pred eEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC---------CCcEEEEeCCCCc
Q 007306 327 ISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---------DSSILVHCPCTKK 395 (608)
Q Consensus 327 v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---------d~~i~vwd~~~~~ 395 (608)
|.-+...++.+.+|. .|+|.+-|..+.+.++++..|.+.+..+. -.| .|++++. |..|+|||++.-+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 554555578888888 89999999999999999999999998655 456 7787774 4568999999877
Q ss_pred eEEEeeCccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-
Q 007306 396 TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI- 473 (608)
Q Consensus 396 ~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~- 473 (608)
.+..+.-+.++ .-+.|+|. ...+++++..|...+-|..+.......... ..... ..+..+.++++|..++.+
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~--v~p~~---s~i~~fDiSsn~~alafgd 331 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM--VNPNG---SGISAFDISSNGDALAFGD 331 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeE--EccCC---CcceeEEecCCCceEEEec
Confidence 66655544433 44567774 456888889999999984432211001111 11111 458999999999999997
Q ss_pred eCCcEEEEEC
Q 007306 474 HEGQIDVYEA 483 (608)
Q Consensus 474 ~d~~i~iwd~ 483 (608)
.+|.|.+|.-
T Consensus 332 ~~g~v~~wa~ 341 (1118)
T KOG1275|consen 332 HEGHVNLWAD 341 (1118)
T ss_pred ccCcEeeecC
Confidence 8999999983
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00054 Score=71.51 Aligned_cols=204 Identities=13% Similarity=0.146 Sum_probs=129.7
Q ss_pred CeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCC-eEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCC---
Q 007306 326 SISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPI-ATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--- 394 (608)
Q Consensus 326 ~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~--- 394 (608)
.+.|+.-++..++.|+ +|.|.+.+-. .+.++.++.+... |..+....+. .|++-+.|+ .+++|++..-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 5555444477888888 9998887732 3444777777666 5444444443 666666554 5899998642
Q ss_pred ---ceEE--EeeC-----ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 395 ---KTKA--KLKG-----HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 395 ---~~~~--~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
.++. .+.+ ...++.+++.+.+-+.+|+|-.+|.|..+.-+--+.... ...-...+. .+|+.+++.
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~----~pITgL~~~ 180 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGK----EPITGLALR 180 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCC----CCceeeEEe
Confidence 2221 1112 356788999999999999999999999884322111111 111011122 689999999
Q ss_pred CCCCE-EEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 465 PDQIH-LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 465 p~~~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+++. +++.....|.+|.+. |+....-....|+.++.|..+++....+++++ +..+++|+....++-..+.
T Consensus 181 ~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 99887 444677889999996 44422221224578888888887655344443 4569999988666555554
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.09 E-value=0.00035 Score=72.05 Aligned_cols=174 Identities=12% Similarity=0.054 Sum_probs=109.6
Q ss_pred eecCCCCeEEEee-cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCC----cEEEEecCCC
Q 007306 217 TSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTA----THKLWKWQSN 291 (608)
Q Consensus 217 ~~s~dg~~l~~~~-~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg----~i~iw~~~~~ 291 (608)
=++|||+.+...+ ..+.+.+.|.++. ....++.+ .+....++++|+|+++++.+.+. ++..-+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etm---eV~~qV~V-----dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~-- 268 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETM---EVAWQVMV-----DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA-- 268 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccc---eEEEEEEe-----CCCcccceECCCCCEEEEeccCcccCcceeeeccc--
Confidence 3788998764443 5577888888742 22223222 33556788999999998887432 12111110
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----------CCEEEEEeCCcEEEEEcCC----Cceee
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSASGGKISIFSLET----FQTLA 357 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----------~~~l~s~~d~~i~vwd~~~----~~~~~ 357 (608)
-.. ..+.|+ |++... .++.|.+.|..+ +..+.
T Consensus 269 -------------------------------e~d--~~vvfni~~iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~ 314 (635)
T PRK02888 269 -------------------------------ERD--WVVVFNIARIEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALT 314 (635)
T ss_pred -------------------------------cCc--eEEEEchHHHHHhhhCCCEEEE-CCCEEEEEECCccccCCcceE
Confidence 011 222222 444333 467899999987 33333
Q ss_pred EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce------------EEEeeCccccEEEEEEeCCCCEEEEEc
Q 007306 358 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT------------KAKLKGHQNRITCLAYSLSLNVLVSSG 423 (608)
Q Consensus 358 ~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~s~~ 423 (608)
.+-.-......+.++||| .++++..+.+|.|.|+.+.+. .....- .......+|.++|+...+-.
T Consensus 315 ~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf 393 (635)
T PRK02888 315 RYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLF 393 (635)
T ss_pred EEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEe
Confidence 333345566789999999 555666789999999987542 222222 22334567999999888888
Q ss_pred CCCcEEEEECCC
Q 007306 424 ADAQLCVWDAVG 435 (608)
Q Consensus 424 ~d~~i~vwd~~~ 435 (608)
.|..|..||+..
T Consensus 394 ~dsqv~kwn~~~ 405 (635)
T PRK02888 394 LDSQIVKWNIEA 405 (635)
T ss_pred ecceeEEEehHH
Confidence 999999999876
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00068 Score=68.64 Aligned_cols=177 Identities=17% Similarity=0.141 Sum_probs=108.7
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEe---CC-CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF---DD-SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 418 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~---~d-~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 418 (608)
.+.+-|.+ |...+.+......+..-.|+|++ .++.-. .. ..+.++|+.+++....+. ..+.-....|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 44555544 55566666566667778899999 443322 22 359999999886554443 2233345679999988
Q ss_pred EEEE-cCCCc--EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCC--cEEEEECCCCceeee
Q 007306 419 LVSS-GADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEG--QIDVYEAPTLNHTSQ 491 (608)
Q Consensus 419 l~s~-~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~--~i~iwd~~~~~~~~~ 491 (608)
|+.. ..||. |.++|+.+.. +..+..+. +.-..-.|+|||+.++.. ..| .|.++|.+.+.. ..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~------~~~Lt~~~----gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~r 320 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN------LPRLTNGF----GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TR 320 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc------ceecccCC----ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eE
Confidence 7654 45554 6666777743 11111111 223367899999999973 333 477788865554 44
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcC-Ce--EEEEeCCCCceeEE
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKS-GH--VKVFDTSTLELRCQ 535 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~d-g~--i~iwd~~~~~~~~~ 535 (608)
+... ...-..-.|||||++|+..+.. |. |.+.|+.++.....
T Consensus 321 iT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 321 LTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred eecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence 4332 2222277899999999877643 44 77777776664333
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=1.3e-06 Score=87.26 Aligned_cols=204 Identities=14% Similarity=0.125 Sum_probs=131.1
Q ss_pred CCeEEEEEcCCC---eEEEEeCCCcEEEEeCCCCce--EEEeeCccccEEEEEEeC-CCCEEEEEcC----CCcEEEEEC
Q 007306 364 PIATYFILLPQD---LFAFGFDDSSILVHCPCTKKT--KAKLKGHQNRITCLAYSL-SLNVLVSSGA----DAQLCVWDA 433 (608)
Q Consensus 364 ~~v~~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~----d~~i~vwd~ 433 (608)
..+.|+++.-+. .+++|..+|.|.+-..+...- -....++....++++|++ |.+.||.|-. |..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345566665433 789999999999988765422 223445778899999998 6677777642 567999999
Q ss_pred CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEec-CC
Q 007306 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSC-DG 510 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~ 510 (608)
.+.-........ +..+.. ....+++|..+.+.+.+| ....+.++|++- ......+ .+..+..+.++| .+
T Consensus 137 ~s~ltvPke~~~-fs~~~l---~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~~ 208 (783)
T KOG1008|consen 137 NSLLTVPKESPL-FSSSTL---DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFSP 208 (783)
T ss_pred ccccCCCccccc-cccccc---cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCCC
Confidence 874111111111 111122 356688999888888887 667999999972 2222222 145667788888 77
Q ss_pred CEEEEEEcCCeEEEEeC-CCCc-eeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC-CcEEEEeCCC
Q 007306 511 KCIYVSCKSGHVKVFDT-STLE-LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-GRVHVIEPLE 582 (608)
Q Consensus 511 ~~l~sg~~dg~i~iwd~-~~~~-~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~v~iW~~~~ 582 (608)
.|+++.. ||.|.+||. .+-+ ++..+... .....-.+..++|.|.....+++.+.| ++|+.+++..
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRN------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhC------CCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 8888776 999999994 2221 11111100 001111255899999877788888866 7899999854
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.07 E-value=0.0016 Score=66.17 Aligned_cols=220 Identities=16% Similarity=0.158 Sum_probs=114.8
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeC
Q 007306 325 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 402 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 402 (608)
-....+.++ |+.++.++||.-.++.....+.... +.-...+|.+.+.+|+-..+++|.++.--+.+..+.++.
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC
Confidence 345678888 8888888899999998544443322 222367898866777777788999964323333233332
Q ss_pred ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEE
Q 007306 403 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 482 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd 482 (608)
...+..+-. |..|...+. +.|.+||..+++. +..+.. .+|..+.|+++|.+++...+..+.|++
T Consensus 108 -~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~-----i~~i~v------~~vk~V~Ws~~g~~val~t~~~i~il~ 171 (443)
T PF04053_consen 108 -PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKL-----IRRIDV------SAVKYVIWSDDGELVALVTKDSIYILK 171 (443)
T ss_dssp -SS-EEEEE----SSSEEEEET-TEEEEE-TTT--E-----EEEESS-------E-EEEEE-TTSSEEEEE-S-SEEEEE
T ss_pred -CcccceEEc---CcEEEEECC-CCEEEEEhhHcce-----eeEEec------CCCcEEEEECCCCEEEEEeCCeEEEEE
Confidence 122344322 777776654 4899999998543 331211 248899999999999997788898888
Q ss_pred CCCC-----------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccc
Q 007306 483 APTL-----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 483 ~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 551 (608)
.... ..+..+.. -...|.+.+|..| -++++. .. .|+- +..|+. ..+. |-+.++
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~-~~i~--------~ld~~~ 235 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGET-GIIA--------HLDKPL 235 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT-EEEEE--TT-EEEE--EETTEE-EEEE--------E-SS--
T ss_pred ecchhcccccccCchhceEEEEE--ecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCc-ceEE--------EcCCce
Confidence 6433 02222211 1567888888766 333333 23 5655 333432 1221 114456
Q ss_pred ccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 552 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 552 ~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
+ -+.+.| ..+.+.....|+.|..+.+...+
T Consensus 236 y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 236 Y--LLGYLP-KENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp E--EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred E--EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence 6 456667 56788888899999988876544
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.06 E-value=5.2e-06 Score=83.08 Aligned_cols=248 Identities=14% Similarity=0.126 Sum_probs=150.3
Q ss_pred CCCCeEEEEEe---C-CEEEEEe-CCcEEEEEcCCCce--eeEecCCCCCeEEEEEcCCC--eEEEEe----CCCcEEEE
Q 007306 323 PKDSISCFALR---G-SHLFSAS-GGKISIFSLETFQT--LATFANPPPIATYFILLPQD--LFAFGF----DDSSILVH 389 (608)
Q Consensus 323 ~~~~v~~v~~s---~-~~l~s~~-d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~--~l~~~~----~d~~i~vw 389 (608)
....+.|+++. + ..++.|. +|.|.+-.+..... .....++....++++|++-+ .||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44567788777 3 3567777 89998887754322 23344677888999999976 777664 35589999
Q ss_pred eCCCC--ceEE--EeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 390 CPCTK--KTKA--KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 390 d~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
|+.++ .+.. .|.+ ......+++|..+.+.+.+|...+.+.++|++.... ....+. + ..+..+.++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svn------T---k~vqG~tVd 204 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVN------T---KYVQGITVD 204 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhh------h---hhcccceec
Confidence 99877 2221 2222 334566888998889999999999999999984110 011111 0 246678888
Q ss_pred C-CCCEEEEEeCCcEEEEE-CCCC-ceeeeecCCCC--CCCeEEEEEecCCC-EEEEEEcC-CeEEEEeCCCC------c
Q 007306 465 P-DQIHLLSIHEGQIDVYE-APTL-NHTSQLVPDKM--DLPITYATYSCDGK-CIYVSCKS-GHVKVFDTSTL------E 531 (608)
Q Consensus 465 p-~~~~l~~~~d~~i~iwd-~~~~-~~~~~~~~~~~--~~~v~~~~~s~~~~-~l~sg~~d-g~i~iwd~~~~------~ 531 (608)
| .+.++++..||.|.+|| ..+- .++..+..... ...+..++|+|... .+++...| ++|+.+|+..- +
T Consensus 205 p~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~n 284 (783)
T KOG1008|consen 205 PFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSAN 284 (783)
T ss_pred CCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccc
Confidence 8 78899998899999999 3332 23333322111 23589999998543 44444444 89999998531 1
Q ss_pred eeEEEeceeeccCCCcccccccEEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 007306 532 LRCQINLTAYAQPGTISLELYPLVIAAHPLE-PNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 532 ~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d-~~~las~s~Dg~v~iW~~ 580 (608)
....+......+--|.+..-.+.+.+||+.+ -....++-..-++.-+++
T Consensus 285 n~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V 334 (783)
T KOG1008|consen 285 NSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSV 334 (783)
T ss_pred ccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccc
Confidence 1111111110011222312234488888854 234455555545555544
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.004 Score=60.04 Aligned_cols=184 Identities=13% Similarity=0.068 Sum_probs=110.2
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEecC-----CCCCeEEEEEcCCCeEEEEeCC------------Cc
Q 007306 325 DSISCFALR--GSHLFSASGGKISIFSLETFQTLATFAN-----PPPIATYFILLPQDLFAFGFDD------------SS 385 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~d------------~~ 385 (608)
+.+.++..- +..|+++. ..+.+++.+++..+..+.. .....+.....|+|.+..+... |.
T Consensus 66 ~~~~~~~~~d~~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~ 144 (307)
T COG3386 66 GGFSSGALIDAGGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGS 144 (307)
T ss_pred CCcccceeecCCCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcce
Confidence 334444433 44555554 3345566665555333321 1234567788899944444333 34
Q ss_pred EEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC-CCcEEEEECCC--CceecccceeeeeccCCCCccceEEEE
Q 007306 386 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQ 462 (608)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~v~ 462 (608)
|+.+|. .+..++.+..+-..-+.++||||++.|..+.. .+.|.-|++.. +......... ...... +..-.++
T Consensus 145 lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~-~~~~~~---G~PDG~~ 219 (307)
T COG3386 145 LYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV-DFDEEP---GLPDGMA 219 (307)
T ss_pred EEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE-EccCCC---CCCCceE
Confidence 555554 46666666666666789999999987776655 47888887763 1111111111 111111 4455678
Q ss_pred EcCCCCEEEEE-eC-CcEEEEECCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEE
Q 007306 463 FHPDQIHLLSI-HE-GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSC 517 (608)
Q Consensus 463 ~sp~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~ 517 (608)
...+|.+-+++ .+ +.|.+|+.. |+++..+..+ ...+++++|. ++.+.|+..+
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--CCCCccceEeCCCcCEEEEEe
Confidence 88888887653 44 389999997 9999988775 4778888886 5555555444
No 347
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.01 E-value=7.4e-06 Score=50.25 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHhhcCcc
Q 007306 14 THLITLIMKFLEEENFKESLQALEQESKIF 43 (608)
Q Consensus 14 ~~ivrli~q~L~~~g~~~s~~~L~~Es~~~ 43 (608)
.++.++|+|||...||..|+.+|++|+++.
T Consensus 4 ~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 355899999999999999999999999974
No 348
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.98 E-value=0.0075 Score=61.36 Aligned_cols=182 Identities=14% Similarity=0.064 Sum_probs=100.2
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc------eEEEeeCccccEEEEEEeCCCC
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK------TKAKLKGHQNRITCLAYSLSLN 417 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~ 417 (608)
.|.+|+.. |+.+.++.-..+.+.++.|+.+..|++-..||.+++||+.... .+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G- 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG- 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC-
Confidence 48888865 7777776644488999999887766677789999999987333 011111111222222333355
Q ss_pred EEEEEcCCCcEEEEECCCCceecccceeeeecc----CCCCccceEE-EEEcCCCCEEEE-EeCCcEEEEECCCCceeee
Q 007306 418 VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG----LVPETTIVNH-IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 418 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~-v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~ 491 (608)
++.-..++.+.+..-..... ..+.+...+.. +.. ..... ..++.+....+. ..++.+.+.+-...+.
T Consensus 140 -ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~--~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 -IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWW--PSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred -EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccc--cccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 33334455554443222110 00011001110 000 01111 234444444444 4555666444332211
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
+. ..+++..+++||+|++||.-..+|.+.|....-.+....+.
T Consensus 213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 21 25789999999999999999999999999877666555554
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.94 E-value=0.009 Score=59.87 Aligned_cols=241 Identities=13% Similarity=0.085 Sum_probs=130.5
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCC--------------CCcEEEEEEeeCCCEEEEEeCC-
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSF--------------GGRVVRLIYSHSGDFLVALTQT- 280 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h--------------~~~V~~~~fsp~g~~l~s~s~d- 280 (608)
..+||||+.+|... ++.|.+++..+ +...+++-.+..+ -+.-..+.|||||++||....|
T Consensus 48 ~~~sP~g~~~~~v~-~~nly~~~~~~----~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~ 122 (353)
T PF00930_consen 48 AKWSPDGKYIAFVR-DNNLYLRDLAT----GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE 122 (353)
T ss_dssp EEE-SSSTEEEEEE-TTEEEEESSTT----SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-
T ss_pred ceeecCCCeeEEEe-cCceEEEECCC----CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC
Confidence 47999999999986 47899998763 3444433222000 1123568899999999988775
Q ss_pred CcEEEEe---cCCCcc---eee--------ecccceeeEEeeCCCCeeeecccc---CCCCCCeEEEEEe--CCEEEEEe
Q 007306 281 ATHKLWK---WQSNKQ---SLE--------EENVNMESQLYQPSSKLVMTNDIA---ADPKDSISCFALR--GSHLFSAS 341 (608)
Q Consensus 281 g~i~iw~---~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~s--~~~l~s~~ 341 (608)
..|..+. ...... ... .......+.+++..+++....... ..-...+..+.|. ++.|+..-
T Consensus 123 ~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 123 REVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 4444333 322211 111 112334557789888875433222 1245667889998 44244433
Q ss_pred -C--C---cEEEEEcCCCceeeEecC-CCC---CeEEEEEc-CCC--eEEEEeCCC--cEEEEeCCCCceEEEeeCcccc
Q 007306 342 -G--G---KISIFSLETFQTLATFAN-PPP---IATYFILL-PQD--LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 342 -d--~---~i~vwd~~~~~~~~~~~~-~~~---~v~~~~~~-~~~--~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
+ . .+.++|..++.+...... ... ......+. +++ ++.....+| .|.+++..++... .+....-.
T Consensus 203 ~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~ 281 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWE 281 (353)
T ss_dssp EETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-
T ss_pred cccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCcee
Confidence 2 2 466778877765444431 111 22345554 666 555556777 5666777766543 45444556
Q ss_pred EEE-EEEeCCCCEEE-EEcCC----CcEEEEECC-CCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 407 ITC-LAYSLSLNVLV-SSGAD----AQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 407 v~~-~~~~~~~~~l~-s~~~d----~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
|.. +.++++++.+. ++..+ ..+..-++. .+.. .+ +.... +.-..+.|||+|++++.
T Consensus 282 V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~---LT~~~----~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 282 VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KC---LTCED----GDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EE---SSTTS----STTEEEEE-TTSSEEEE
T ss_pred ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---Ee---ccCCC----CCceEEEECCCCCEEEE
Confidence 754 67888876654 45442 244445555 3221 11 22221 12258999999999987
No 350
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=97.89 E-value=2.9e-05 Score=68.90 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=67.8
Q ss_pred ecchhhhhHHHHHHHHHhhhcHHHHHHHHHhhcCcccc---------HHHHHHHHhcCCHHHHHHHHhhcccCCCCCcce
Q 007306 8 IDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN---------VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSK 78 (608)
Q Consensus 8 ~~~~~~~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~ 78 (608)
++++++ -|||+.||-..||.++|..+.+|+|+..+ -..++.+|..|+.++|++.+.++ .+..+..
T Consensus 24 ~~~~d~---n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l---~PeiLd~ 97 (228)
T KOG2659|consen 24 VMREDL---NRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL---NPEILDT 97 (228)
T ss_pred cchhhH---HHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh---ChHHHcc
Confidence 455666 59999999999999999999999999771 67899999999999999999987 2222221
Q ss_pred ---eehhHHhhhHHHHHHhhcC
Q 007306 79 ---KMFFELRKHKYCEALCRQQ 97 (608)
Q Consensus 79 ---~~~~~i~~~~~le~l~~~~ 97 (608)
+-|. +++|+++|++.++.
T Consensus 98 n~~l~F~-Lq~q~lIEliR~~~ 118 (228)
T KOG2659|consen 98 NRELFFH-LQQLHLIELIREGK 118 (228)
T ss_pred chhHHHH-HHHHHHHHHHHhhh
Confidence 2355 89999999999854
No 351
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.83 E-value=0.0057 Score=61.41 Aligned_cols=245 Identities=12% Similarity=0.082 Sum_probs=127.4
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCC----------------------c---------------eeeEeecCCCC
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPS----------------------E---------------CRTLLLPDNSF 258 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~----------------------~---------------~~~~~l~~~~h 258 (608)
++|+++..-++.+...|.|.+|.+...+..+ . +....+- +..
T Consensus 7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~-~~~ 85 (395)
T PF08596_consen 7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL-DAK 85 (395)
T ss_dssp EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE----
T ss_pred EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe-ecc
Confidence 4789999999999999999998775321111 0 1111111 224
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-----
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----- 333 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----- 333 (608)
.++|++++.|.-| ++|.|..+|.+.|.|++.+.. ++...-.. ..........|+++.|+
T Consensus 86 ~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPav------------I~~~~i~~---~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 86 QGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAV------------IYNENIRE---SFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEE------------EEEEEGGG-----T-SS----EEEEEEEEEE-T
T ss_pred CCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeE------------Eeeccccc---cccccccccCeeEEEEEEEecC
Confidence 7899999998555 899999999999999977765 34311111 01111355678888888
Q ss_pred -CC----EEEEEe-CCcEEEEEcC--C-Ccee----eEecCCCCCeEEEE-EcCC-----------------C----eEE
Q 007306 334 -GS----HLFSAS-GGKISIFSLE--T-FQTL----ATFANPPPIATYFI-LLPQ-----------------D----LFA 378 (608)
Q Consensus 334 -~~----~l~s~~-d~~i~vwd~~--~-~~~~----~~~~~~~~~v~~~~-~~~~-----------------~----~l~ 378 (608)
+. .+++|. .|.+.+|.+. . +... .....+.++|..+. ++.+ + .++
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 11 567777 7999999874 1 2211 11223445554444 3211 1 234
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe-----CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCC
Q 007306 379 FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 453 (608)
Q Consensus 379 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 453 (608)
+...+..++++.+.+.+..+...........+.+- ..+..|++-..+|.|++|.+-.-+.+....+......
T Consensus 230 VvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~--- 306 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS--- 306 (395)
T ss_dssp EEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---H---
T ss_pred EEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccc---
Confidence 44557789999988877665444222233334442 3566788889999999999987544333222201111
Q ss_pred CccceEEEEEcCCCCEEEEEeCCcEEEEE
Q 007306 454 ETTIVNHIQFHPDQIHLLSIHEGQIDVYE 482 (608)
Q Consensus 454 ~~~~v~~v~~sp~~~~l~~~~d~~i~iwd 482 (608)
..+....++++|..++......+.++.
T Consensus 307 --~~~~~ssis~~Gdi~~~~gpsE~~l~s 333 (395)
T PF08596_consen 307 --RRLSSSSISRNGDIFYWTGPSEIQLFS 333 (395)
T ss_dssp --HHHTT-EE-TTS-EEEE-SSSEEEEEE
T ss_pred --ccccccEECCCCCEEEEeCcccEEEEE
Confidence 234456778888877665444444443
No 352
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00026 Score=72.22 Aligned_cols=138 Identities=12% Similarity=0.118 Sum_probs=92.9
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee-CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
.|.--+++..+ +++.|+.-|.+++|+...+.....-. +..+.+..+..+++..++|.|+..|.|.++-+.........
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 33333455666 99999999999999988776553322 34455666678888999999999999999988773322222
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEe
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s 507 (608)
.+......|. ..|++++|++|+..+++| ..|+|..-.+.+.. ..+.+.. ....|..+.+.
T Consensus 115 ~~t~~d~~~~---~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~--~ds~IVQlD~~ 179 (726)
T KOG3621|consen 115 YVTPCDKSHK---CRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS--EDSEIVQLDYL 179 (726)
T ss_pred eeccccccCC---ceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec--cCcceEEeecc
Confidence 2221112233 789999999999999998 67888888776511 1122221 15667766654
No 353
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.81 E-value=0.027 Score=52.45 Aligned_cols=200 Identities=12% Similarity=0.031 Sum_probs=103.5
Q ss_pred CCCcEEEEEEeeCCCEEEEEeC-CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~ 335 (608)
-...+..++|+|+.+.|++... .+.|...+. +|++++.....+ .+..-.|++. +.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~----------------------~G~vlr~i~l~g-~~D~EgI~y~g~~ 76 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL----------------------DGKVLRRIPLDG-FGDYEGITYLGNG 76 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET----------------------T--EEEEEE-SS--SSEEEEEE-STT
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC----------------------CCCEEEEEeCCC-CCCceeEEEECCC
Confidence 4567999999998776666555 556544432 233333322222 4567888998 56
Q ss_pred EEEEEe--CCcEEEEEcCCCc------eeeEec-----CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---CceEE
Q 007306 336 HLFSAS--GGKISIFSLETFQ------TLATFA-----NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---KKTKA 398 (608)
Q Consensus 336 ~l~s~~--d~~i~vwd~~~~~------~~~~~~-----~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~---~~~~~ 398 (608)
.++... ++.+.++++.... ....+. .+...+-.++|+|.+ .|+++-...-..+|.+.. ...+.
T Consensus 77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~ 156 (248)
T PF06977_consen 77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF 156 (248)
T ss_dssp EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence 666666 7889998883311 112222 244568899999988 666666666666666543 21111
Q ss_pred Ee--------eCccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCE
Q 007306 399 KL--------KGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 399 ~~--------~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
.. ......+.+++++|. +++++....+..|..+|.. ++......+..-..+-...-...-.|+|.++|++
T Consensus 157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence 11 113346789999995 5667777778888888844 3333222222100010000024668999999988
Q ss_pred EEEEeCCcEEEE
Q 007306 470 LLSIHEGQIDVY 481 (608)
Q Consensus 470 l~~~~d~~i~iw 481 (608)
.+++.-+..++|
T Consensus 236 YIvsEpNlfy~f 247 (248)
T PF06977_consen 236 YIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTEEEEE
T ss_pred EEEcCCceEEEe
Confidence 888876666655
No 354
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=97.79 E-value=4e-05 Score=53.81 Aligned_cols=52 Identities=29% Similarity=0.501 Sum_probs=41.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHhhcccCCCCCcceeehhHHhhhHHHHHHhhcC
Q 007306 45 NVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRQQ 97 (608)
Q Consensus 45 ~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~le~l~~~~ 97 (608)
++..++++|+.|+|++|++.+......-....+.+.|. |++|+|+|++..+.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~-L~~q~~lell~~~~ 55 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFE-LRKQKFLELVRQGK 55 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhH-HHHHHHHHHHHcCC
Confidence 46789999999999999999988733223344567788 99999999998754
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.78 E-value=0.037 Score=56.38 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=90.5
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEe-------cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC
Q 007306 325 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK 394 (608)
Q Consensus 325 ~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~ 394 (608)
+.+.++.|+ ...|+... ||.++++|+. |+....+ .-....+....+..+| .++++ ++.+.+.+-...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECC--CCeEEEEeCccc
Confidence 789999999 65555555 9999999986 3331111 1111222233444466 44443 444544432221
Q ss_pred c-eEEEee---C-----ccc-cEEE-EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE
Q 007306 395 K-TKAKLK---G-----HQN-RITC-LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 463 (608)
Q Consensus 395 ~-~~~~~~---~-----~~~-~v~~-~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 463 (608)
. ..+.+. + +.. .... ..++.+....+....++.+.+.+-... ..+. .. +++..|++
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-----~~i~----~~----~~i~~iav 224 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-----KQID----SD----GPIIKIAV 224 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----cccc----CC----CCeEEEEE
Confidence 1 111111 0 000 0000 224444445555555555554443321 0111 11 57999999
Q ss_pred cCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 007306 464 HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 510 (608)
Q Consensus 464 sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 510 (608)
||+|++++. ..+|.+.+.+..-.+....+... .......+.|.-+.
T Consensus 225 Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~-~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 225 SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD-SKSPPKQMAWCGND 271 (410)
T ss_pred CCCCCEEEEEECCCCEEEEECcccceeEEeecC-cCCCCcEEEEECCC
Confidence 999999998 67899999987666666666543 23456677776543
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.0012 Score=66.82 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=103.4
Q ss_pred CceEEEeeCccccEEEEEEeCCCCEEEEEc---CC-CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCE
Q 007306 394 KKTKAKLKGHQNRITCLAYSLSLNVLVSSG---AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 394 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
|.....+......+..-.|+|++..++..+ .. ..+.++|+.+++... +- ...+ .-...+|+|||+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~---i~-~~~g------~~~~P~fspDG~~ 251 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV---IL-NFNG------NNGAPAFSPDGSK 251 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce---ee-ccCC------ccCCccCCCCCCE
Confidence 333344444445667778999988766542 22 468999999865321 11 1223 2346789999999
Q ss_pred EEEE--eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-C--eEEEEeCCCCceeEEEeceeec
Q 007306 470 LLSI--HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-G--HVKVFDTSTLELRCQINLTAYA 542 (608)
Q Consensus 470 l~~~--~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-g--~i~iwd~~~~~~~~~~~~~~~~ 542 (608)
|+.+ .|+ .|+++|+.++... .+... .+.-+.-.|+|||++|+..+.. | .|++.+.+.+.. ..++..
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~--- 324 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLP-RLTNG--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS--- 324 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcce-ecccC--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc---
Confidence 9874 455 4888888766633 34322 3334477899999999877653 4 577777777664 333322
Q ss_pred cCCCcccccccEEEEEecCCCCEEEEEeCC-Cc--EEEEeCCCCc
Q 007306 543 QPGTISLELYPLVIAAHPLEPNRIALGLTN-GR--VHVIEPLESE 584 (608)
Q Consensus 543 ~~g~~~~~v~~~~v~~sp~d~~~las~s~D-g~--v~iW~~~~~~ 584 (608)
+ .. -. .-.|+| ||++++..+.+ |. |.+.++.++.
T Consensus 325 --~--~~-~~--~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 325 --G--GG-NS--NPVWSP-DGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred --C--CC-Cc--CccCCC-CCCEEEEEeccCCceeeEEeccCCCC
Confidence 1 11 11 567999 79988888753 44 6666666554
No 357
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.76 E-value=0.019 Score=53.43 Aligned_cols=198 Identities=15% Similarity=0.086 Sum_probs=110.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc
Q 007306 322 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 395 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~ 395 (608)
+-...+..++|. .+.|++.. .+.|..++. +|+.++.+.-. .+..-.+++..++ ++++.-.++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 345569999999 56666666 577877886 48888887633 3567788998888 66666668899999874321
Q ss_pred ------eEEEee-----CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC---Cceecccceeeee--ccCCCCccceE
Q 007306 396 ------TKAKLK-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG---WKKLCSKFLHSFQ--TGLVPETTIVN 459 (608)
Q Consensus 396 ------~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~~~~~~~~--~~~~~~~~~v~ 459 (608)
....+. .++..+-.++|+|.++.|+.+-...-..+|.+.. ............. .... ..+.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~S 174 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV---RDLS 174 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S---S---
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee---cccc
Confidence 112221 2445688999999888888887776666776653 1100000000000 0111 3577
Q ss_pred EEEEcCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCC--C-----CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 460 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDK--M-----DLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 460 ~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~--~-----~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
+++++|....+++ + .+..|..+| .+|+.+..+.... | -...-.++|.++|++.+ .++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 8999998666665 6 667899999 4788766654432 1 13577899999996544 4477777665
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.018 Score=58.27 Aligned_cols=203 Identities=17% Similarity=0.134 Sum_probs=139.5
Q ss_pred EEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCCceEEE
Q 007306 328 SCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTKKTKAK 399 (608)
Q Consensus 328 ~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---d~~i~vwd~~~~~~~~~ 399 (608)
..++.+ +..++... ++.|.+.|..+.+......... ....++++|++ .+.++.. ++.+.+.|..+++.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 345555 55444444 6999999988777776665333 45588999999 5555544 68999999999888877
Q ss_pred eeCccccEEEEEEeCCCCEEEEEc-CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eC-
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE- 475 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d- 475 (608)
...-..+ ..++++|+|+.+.... .++.|.+.|..+..............+ .....+.++|+|.++.+. .+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEeccCC
Confidence 5433334 8899999999655554 789999999777432210000001111 234578999999988773 22
Q ss_pred -CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-CeEEEEeCCCCceeEEEec
Q 007306 476 -GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-GHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 476 -~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-g~i~iwd~~~~~~~~~~~~ 538 (608)
+.+...|..++.....-...... ....+.++|+|+++.+.... +.+.+-|..+.........
T Consensus 230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 58999999888776652221112 56678999999999988554 8999999999887776543
No 359
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.72 E-value=0.013 Score=58.02 Aligned_cols=179 Identities=11% Similarity=0.110 Sum_probs=104.2
Q ss_pred eEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee---C----CCEEEEEeC---------C-CcEEEEecCCCccee
Q 007306 233 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH---S----GDFLVALTQ---------T-ATHKLWKWQSNKQSL 295 (608)
Q Consensus 233 ~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp---~----g~~l~s~s~---------d-g~i~iw~~~~~~~~~ 295 (608)
.|++.|..+ -..+..+.|+. ...+.+++.-. + ..+++.|+. . |.+.++++.....
T Consensus 3 ~i~l~d~~~---~~~~~~~~l~~---~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-- 74 (321)
T PF03178_consen 3 SIRLVDPTT---FEVLDSFELEP---NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-- 74 (321)
T ss_dssp EEEEEETTT---SSEEEEEEEET---TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred EEEEEeCCC---CeEEEEEECCC---CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc--
Confidence 466666653 22344555654 44555544433 2 467777764 1 6677776655300
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCCc-eeeEec-CCCCCeEEEEEcC
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETFQ-TLATFA-NPPPIATYFILLP 373 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~d~~i~vwd~~~~~-~~~~~~-~~~~~v~~~~~~~ 373 (608)
+...++........++|++++--+..|+.+.++.|.+|++...+ ....-. .....+.++....
T Consensus 75 ---------------~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 75 ---------------NNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp ------------------EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred ---------------cceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 00011111111256889988877556888889999999998777 333222 1223555555543
Q ss_pred CCeEEEEeCCCcEEEEeCCC-CceEEEee--CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC
Q 007306 374 QDLFAFGFDDSSILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 374 ~~~l~~~~~d~~i~vwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 435 (608)
+ ++++|...+.+.++..+. +..+..+. .....++++.+-++++.++.+..+|.+.++....
T Consensus 140 ~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 140 N-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp T-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred c-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 3 889999888888774432 22232222 2345688888887777999999999999998763
No 360
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.068 Score=54.06 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=134.5
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC---CCcEEEEECCCCceec
Q 007306 366 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLC 440 (608)
Q Consensus 366 v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~ 440 (608)
...++.++.+ ..+....++.|.+.|..+.+......-- .....++++|+++.+..+.. ++++.+.|..+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--- 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--- 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---
Confidence 3577888888 5555556789999998777766555422 25678999999987776655 6888888888743
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCceeeeecC---CCCCCCeEEEEEecCCCEEEE
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNHTSQLVP---DKMDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s 515 (608)
.+.+.+.+.. + ..++++|+|..+++. .++.|.+.|..+....+ -.. -.-......+.++|+|.+++.
T Consensus 152 --~~~~~~vG~~----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 152 --VTATIPVGNT----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred --EEEEEecCCC----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEE
Confidence 3333344432 3 789999999988874 58999999986655542 110 011344567899999997776
Q ss_pred EEcC---CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCcc
Q 007306 516 SCKS---GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEV 585 (608)
Q Consensus 516 g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iW~~~~~~~ 585 (608)
.... +.+...|..++.....-... ... ....+..+| ++..+.+.. ..+.|.+-|..+...
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~--------~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPV--------GSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEecccc--------ccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCce
Confidence 5444 59999999998876652211 111 233688899 677776664 447888888777543
No 361
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0012 Score=68.80 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=82.8
Q ss_pred EEEEEcCCC-eEEEEe----CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecc
Q 007306 367 TYFILLPQD-LFAFGF----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 441 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 441 (608)
+-.+|+|.. ++++++ ..|+|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~------ 90 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT------ 90 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC------
Confidence 345799998 888776 457888884 5566544332 233466799999888899998999999999887
Q ss_pred cceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECC
Q 007306 442 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 484 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~ 484 (608)
+...++...|. .+|..+.|||+|..++++ .-|.+.+|...
T Consensus 91 ~e~htv~~th~---a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 TETHTVVETHP---APIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeeeeccCCC---CCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 44555677777 799999999999999996 66899999865
No 362
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.67 E-value=0.0028 Score=68.05 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=70.5
Q ss_pred EEEEEeCCcEEEEEcCCC--ceeeE-ec--CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 336 HLFSASGGKISIFSLETF--QTLAT-FA--NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~~--~~~~~-~~--~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
.++.-+++.+..||.+-. +++.. .. ......+|++-+.+|+||+|+.+|.|++||--..+....+.+-..+|..|
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i 624 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI 624 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE
Confidence 344444889999998653 22221 11 23456788888888899999999999999954334444566778999999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEEC
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDA 433 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~ 433 (608)
..+.||+++++.+ +..+.+++.
T Consensus 625 Dvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 625 DVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EecCCCcEEEEee-cceEEEEEE
Confidence 9999999988655 667778875
No 363
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.65 E-value=0.092 Score=54.04 Aligned_cols=242 Identities=12% Similarity=0.090 Sum_probs=124.4
Q ss_pred cEEEEEEeeCCCEEEEE-eCCC----cEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 261 RVVRLIYSHSGDFLVAL-TQTA----THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~-s~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+...++||||+++|.+ +..| .+++.|+.++ ..+...+. ......+.|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---------------------~~l~d~i~---~~~~~~~~W~~d 180 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---------------------KFLPDGIE---NPKFSSVSWSDD 180 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---------------------EEEEEEEE---EEESEEEEECTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---------------------cCcCCccc---ccccceEEEeCC
Confidence 34467899999988865 3334 3555555544 33322111 1111237888
Q ss_pred CCEEEEEe-CC-----------cEEEEEcCCCce--eeEecCCCCC--eEEEEEcCCC-eEEE-EeCC---CcEEEEeCC
Q 007306 334 GSHLFSAS-GG-----------KISIFSLETFQT--LATFANPPPI--ATYFILLPQD-LFAF-GFDD---SSILVHCPC 392 (608)
Q Consensus 334 ~~~l~s~~-d~-----------~i~vwd~~~~~~--~~~~~~~~~~--v~~~~~~~~~-~l~~-~~~d---~~i~vwd~~ 392 (608)
++.|+... +. .|..|.+.+... ...+...... ...+..++|+ +++. .... ..+++.|+.
T Consensus 181 ~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 181 GKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp SSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred CCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 45555554 32 277788876543 3455544433 5678889999 5443 3322 358888888
Q ss_pred CC----ceEEEeeCccccEEEEEEeCCCCEEEEEcC---CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC
Q 007306 393 TK----KTKAKLKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 465 (608)
Q Consensus 393 ~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 465 (608)
.+ .....+......+....-+..+.+++.... ++.|...++..........+ +. .+.. ...+..+...
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~--l~-~~~~-~~~l~~~~~~- 335 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTV--LI-PEDE-DVSLEDVSLF- 335 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEE--EE---SS-SEEEEEEEEE-
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeE--Ec-CCCC-ceeEEEEEEE-
Confidence 74 223333333333433333334445444432 46677778777542111111 12 2220 0235555543
Q ss_pred CCCEEEE-E-eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc----CCeEEEEeCCCCcee
Q 007306 466 DQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLELR 533 (608)
Q Consensus 466 ~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~----dg~i~iwd~~~~~~~ 533 (608)
+.+|+. . .++ .|+++++..+.....+.... .+.|..+...++++.+...-. -++++-||+.+++..
T Consensus 336 -~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 336 -KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp -TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred -CCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 556665 3 443 68999997355555554432 455666665666665443322 278999999998754
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.63 E-value=0.012 Score=62.51 Aligned_cols=201 Identities=13% Similarity=0.076 Sum_probs=108.4
Q ss_pred CCeEEEEEcCCC-eEEEEe------CCC--cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCC---------
Q 007306 364 PIATYFILLPQD-LFAFGF------DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--------- 425 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~------~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------- 425 (608)
..+...+++|+| .++... .|+ .|.+++.. +.......+. ....-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 456788999999 555443 233 56666653 3332223332 37788999998887776532
Q ss_pred ---CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEE---EECCCCce-e---eeecCC
Q 007306 426 ---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV---YEAPTLNH-T---SQLVPD 495 (608)
Q Consensus 426 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~i---wd~~~~~~-~---~~~~~~ 495 (608)
+.+.+.+++.++... ... +.|.++.|||||+.++...++.|++ -....|.. + ..+..
T Consensus 427 ~~~gql~~~~vd~ge~~~---------~~~---g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~- 493 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---------RVP---GPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGP- 493 (591)
T ss_pred CCCceEEEEeccCchhhh---------ccC---CCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeec-
Confidence 222222333321100 111 5799999999999999865778777 44444541 1 11211
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC-CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCc
Q 007306 496 KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 496 ~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 574 (608)
.-...+.++.|..++.++ .+..++.-.+|.+.- |.....+.. + +-.-.+.+++-++ + -+.....+|.
T Consensus 494 ~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~------~--n~~~~v~~vaa~~-~--~iyv~~~~g~ 561 (591)
T PRK13616 494 GLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS------R--NLSAPVVAVAASP-S--TVYVTDARAV 561 (591)
T ss_pred ccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCC------C--CccCceEEEecCC-c--eEEEEcCCce
Confidence 113346889999999855 555555444554432 221111111 1 0011134666665 2 3445566664
Q ss_pred EEEEeCCCCccccccCCC
Q 007306 575 VHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 575 v~iW~~~~~~~~~~~~~~ 592 (608)
+.+=.-.++...|...+.
T Consensus 562 ~~l~~~~~~~~~W~ev~~ 579 (591)
T PRK13616 562 LQLPNSDSGDQYWREVPG 579 (591)
T ss_pred EEecCCCCCCCCceECcc
Confidence 444333344567876554
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.60 E-value=0.0016 Score=69.91 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=96.1
Q ss_pred CCcEEEEEcCCCceeeEecCCCCC-eEEEEEcC-----CC-eEEEEeCCCcEEEEeCCCCc--eEE-Eee--CccccEEE
Q 007306 342 GGKISIFSLETFQTLATFANPPPI-ATYFILLP-----QD-LFAFGFDDSSILVHCPCTKK--TKA-KLK--GHQNRITC 409 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~-~l~~~~~d~~i~vwd~~~~~--~~~-~~~--~~~~~v~~ 409 (608)
...|+-.|+++|+.+..+..+... |..++-.. +. ..+.|-.++.+..||++-.. ++. ..+ ......+|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 478999999999999999977654 55544321 13 56788889999999988632 221 111 13456778
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 483 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~ 483 (608)
++-+.+| +||+|+.+|.||+||-.. +.-+|.+.+-. .+|..|..+.||+++++..+..+.+++.
T Consensus 583 ~aTt~~G-~iavgs~~G~IRLyd~~g------~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGSNKGDIRLYDRLG------KRAKTALPGLG---DPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEeCCCcEEeecccc------hhhhhcCCCCC---CCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 8888777 688899999999999432 22333344443 6899999999999999988888988885
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.032 Score=51.27 Aligned_cols=225 Identities=14% Similarity=0.053 Sum_probs=129.6
Q ss_pred EEEEEe-CC-cEEEEEcCCCceeeEecCCCCC--eEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCC-ceEEEeeCcc
Q 007306 336 HLFSAS-GG-KISIFSLETFQTLATFANPPPI--ATYFILLPQD-LFAFGFDD-----SSILVHCPCTK-KTKAKLKGHQ 404 (608)
Q Consensus 336 ~l~s~~-d~-~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~-~l~~~~~d-----~~i~vwd~~~~-~~~~~~~~~~ 404 (608)
-++.+- -| ...++|....+...++....+. .-.=.||||| +|...-.| |.|-|||.+.+ +.+..+..|.
T Consensus 82 avafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G 161 (366)
T COG3490 82 AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG 161 (366)
T ss_pred eEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCC
Confidence 344444 33 3457777776666555432221 1123589999 66654433 57999998865 4566777888
Q ss_pred ccEEEEEEeCCCCEEEEEcC------------------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC
Q 007306 405 NRITCLAYSLSLNVLVSSGA------------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 466 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~------------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 466 (608)
-....+.|.+||+.++.+.. .-++.+.|..+++.+....+. ...+. -+|..++..+|
T Consensus 162 iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp--~~l~~---lSiRHld~g~d 236 (366)
T COG3490 162 IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLP--ASLRQ---LSIRHLDIGRD 236 (366)
T ss_pred cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCc--hhhhh---cceeeeeeCCC
Confidence 88889999999999887642 112334444443332222221 01122 46888999999
Q ss_pred CCEEEEE-eCCc-----EEEEECCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeE
Q 007306 467 QIHLLSI-HEGQ-----IDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRC 534 (608)
Q Consensus 467 ~~~l~~~-~d~~-----i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~ 534 (608)
|+..+.+ ..|. -.+=-...++.+.-+..+. -...|-+++.+.+..+++..+ ..+...+||..+|..+.
T Consensus 237 gtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~ 316 (366)
T COG3490 237 GTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVS 316 (366)
T ss_pred CcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEe
Confidence 9887764 2221 1111222344443332221 145677888886666665554 45677899999999776
Q ss_pred EEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 535 QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 535 ~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
.-... + +..++- ...=++..+.+|.+.++.-
T Consensus 317 ~a~l~--------d----aaGva~---~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 317 EAALP--------D----AAGVAA---AKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred ccccc--------c----ccccee---ccCceEEecCCceEEeccc
Confidence 54322 1 112332 2334566667888887743
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.60 E-value=0.018 Score=53.36 Aligned_cols=190 Identities=12% Similarity=-0.010 Sum_probs=114.8
Q ss_pred EEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEEeeCc-cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 367 TYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~--~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
-.+.|..+| ++-+.+.-| .|+.+|+.+|+......-. ...--.++.. +++.....-.++...+||..+.+.....
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEE
Confidence 467777788 777777666 7999999999877655432 2222334444 3344555567899999999985543322
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCC---CeEEEEEecCCCEEEEEEc
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDL---PITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~sg~~ 518 (608)
... +.-..++ .|++.|+.+ ....++++|..+.+..+++....... .+.-+.|- +|...|-.-.
T Consensus 127 ~y~----------~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~ 193 (264)
T PF05096_consen 127 PYP----------GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQ 193 (264)
T ss_dssp E-S----------SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETT
T ss_pred ecC----------CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCC
Confidence 221 2233555 456666665 67789999998888777766543333 34456664 6766666666
Q ss_pred CCeEEEEeCCCCceeEEEeceeeccC----CCc-ccccccEEEEEecCCCCEEEEEe
Q 007306 519 SGHVKVFDTSTLELRCQINLTAYAQP----GTI-SLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 519 dg~i~iwd~~~~~~~~~~~~~~~~~~----g~~-~~~v~~~~v~~sp~d~~~las~s 570 (608)
...|..-|..+|+....+......+. ... ...--.+.+||.|..+.+++||=
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 78899999999999988875433221 000 01111349999996666777773
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.047 Score=52.82 Aligned_cols=204 Identities=18% Similarity=0.093 Sum_probs=114.5
Q ss_pred CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC-----ccccEEEEEEeCC
Q 007306 342 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLS 415 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~ 415 (608)
.+.|.-|+..+++.. .+. ....+.++.....+ .|+++.. .+.+++..++..+..+.. .....+.+...|+
T Consensus 46 ~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pd 121 (307)
T COG3386 46 GGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPD 121 (307)
T ss_pred CCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCC
Confidence 577888887755432 222 22223344443344 5555543 456666665555332211 2245678889999
Q ss_pred CCEEEEEcC-----------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEE
Q 007306 416 LNVLVSSGA-----------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYE 482 (608)
Q Consensus 416 ~~~l~s~~~-----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd 482 (608)
|.+.++... -|.++.+|... .... ...++- ..-+.++||||++.++.+ ..+.|+-|+
T Consensus 122 G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g------~~~~-l~~~~~---~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 122 GRIWFGDMGYFDLGKSEERPTGSLYRVDPDG------GVVR-LLDDDL---TIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCEEEeCCCccccCccccCCcceEEEEcCCC------CEEE-eecCcE---EecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 987665433 13333344321 1112 222322 345689999999888875 457888887
Q ss_pred CCC--Cce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-eEEEEeCCCCceeEEEeceeeccCCCcccccccEEE
Q 007306 483 APT--LNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 483 ~~~--~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
+.. +.. ...+......+..-.++...+|.+.+++..+| .|.+|+.. |+++..+... . .+++++
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP--------~--~~~t~~ 260 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP--------V--KRPTNP 260 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC--------C--CCCccc
Confidence 752 211 11111111245666778888888876555554 99999999 8888887643 1 335577
Q ss_pred EEecCCCCEEEEEe
Q 007306 557 AAHPLEPNRIALGL 570 (608)
Q Consensus 557 ~~sp~d~~~las~s 570 (608)
+|--.+.+.|...+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 77643445444443
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.56 E-value=0.01 Score=58.67 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=108.1
Q ss_pred CcEEEEeCCCCceEEEeeC-ccccEEEEE---EeCC----CCEEEEEcC----------CCcEEEEECCCCceeccccee
Q 007306 384 SSILVHCPCTKKTKAKLKG-HQNRITCLA---YSLS----LNVLVSSGA----------DAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 384 ~~i~vwd~~~~~~~~~~~~-~~~~v~~~~---~~~~----~~~l~s~~~----------d~~i~vwd~~~~~~~~~~~~~ 445 (608)
..|++.|..+.+.+..+.- ....+.+++ +..+ ..++++|+. .|.|.++++..... ....+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-NNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-cceEEE
Confidence 3688888888877765543 223344443 3322 456776653 28899999988300 001111
Q ss_pred eee-ccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCc-eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 446 SFQ-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 446 ~~~-~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
.+. .... ++|++++-- +..++++.++.|.+|++...+ ....-... ....+.++... +++++.|.....+.
T Consensus 81 ~i~~~~~~---g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 81 LIHSTEVK---GPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEEEES---S-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEEEeec---CcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCEE
Confidence 111 1112 678888766 345888888999999998777 44333221 13355555544 66999998888888
Q ss_pred EEeCCC-CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 524 VFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 524 iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
++.... +..+..+... ....+++++.|-+ +++.++.+..+|.|.++....
T Consensus 153 ~~~~~~~~~~l~~va~d--------~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 153 LLRYDEENNKLILVARD--------YQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTTE-EEEEEEE--------SS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEccCCEEEEEEec--------CCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECC
Confidence 875543 2222232211 3346677999987 457999999999999998863
No 370
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.54 E-value=0.092 Score=50.56 Aligned_cols=229 Identities=14% Similarity=0.059 Sum_probs=127.9
Q ss_pred eCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEE
Q 007306 269 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKIS 346 (608)
Q Consensus 269 p~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~ 346 (608)
..++.|+.|+.+| +.+++...... ..+. .+...|..+... -+.+++-+|+.+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------~~~i----~~~~~I~ql~vl~~~~~llvLsd~~l~ 59 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------PTRI----LKLSSITQLSVLPELNLLLVLSDGQLY 59 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------------ceeE----eecceEEEEEEecccCEEEEEcCCccE
Confidence 4577899998888 77776621111 1110 133447777777 5677777789999
Q ss_pred EEEcCCCceeeEe--------------cCCCCCeEEEE--EcCCC-eEEEEeCCCcEEEEeCCCC-----ceEEEeeCcc
Q 007306 347 IFSLETFQTLATF--------------ANPPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTK-----KTKAKLKGHQ 404 (608)
Q Consensus 347 vwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~-~l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~ 404 (608)
++++......... ......+..++ -.+.+ ..++....+.|.+|..... +..+.+. -.
T Consensus 60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp 138 (275)
T PF00780_consen 60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LP 138 (275)
T ss_pred EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cC
Confidence 9998764433311 11223444444 12334 4444444558888876543 3445554 34
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC------CCCccceEEEEEcCCCCEEEEEeCCcE
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL------VPETTIVNHIQFHPDQIHLLSIHEGQI 478 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~v~~sp~~~~l~~~~d~~i 478 (608)
..+.+++|. ++.++.|.. +...+.|+.++.... +....... .....++..+... ++.+|+ +.+..-
T Consensus 139 ~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll-~~~~~g 210 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSE---LLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLL-CYDNIG 210 (275)
T ss_pred CCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceE---EeCccCCcchhhhcccCCCceEEEEeC-CceEEE-EecceE
Confidence 678899998 456777764 447788988644211 11000000 0000233333333 344554 444444
Q ss_pred EEEECCCCceee--eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 479 DVYEAPTLNHTS--QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 479 ~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
.+.|. .|+..+ .+. -.....++++. ..||+..+. +.|.||++.++++++.+..
T Consensus 211 ~fv~~-~G~~~r~~~i~---W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 211 VFVNK-NGEPSRKSTIQ---WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEEcC-CCCcCcccEEE---cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 44454 455443 221 14456666664 457777655 5599999999999988863
No 371
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0061 Score=60.56 Aligned_cols=138 Identities=15% Similarity=0.248 Sum_probs=98.6
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC---eE-----EEEeCCCcEEEEeCCCCc--eEEEeeCc-
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD---LF-----AFGFDDSSILVHCPCTKK--TKAKLKGH- 403 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~l-----~~~~~d~~i~vwd~~~~~--~~~~~~~~- 403 (608)
++.++. ...++-.|+++|+.+...+-+.. |+-+.+.|+. .+ +.|-.|..|.-||++-.. .+..-++|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344444 57788899999999999987665 7777788775 32 467788999999987432 22222232
Q ss_pred ---cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEE
Q 007306 404 ---QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDV 480 (608)
Q Consensus 404 ---~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~i 480 (608)
.....|.+-..+| ++++|+.+|.|++||--. ..-.+.+.+-. .+|..|..+.+|++|++..+..+.+
T Consensus 427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~------~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~tyLlL 496 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIG------RRAKTALPGLG---DAIKHVDVTADGKWILATCKTYLLL 496 (644)
T ss_pred cccccccceeeecCCc-eEEEeecCCcEEeehhhh------hhhhhcccccC---CceeeEEeeccCcEEEEecccEEEE
Confidence 2345666666666 688899999999999733 22233444444 6899999999999999988888888
Q ss_pred EECC
Q 007306 481 YEAP 484 (608)
Q Consensus 481 wd~~ 484 (608)
.++.
T Consensus 497 i~t~ 500 (644)
T KOG2395|consen 497 IDTL 500 (644)
T ss_pred EEEe
Confidence 8753
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.49 E-value=0.12 Score=50.68 Aligned_cols=229 Identities=14% Similarity=0.134 Sum_probs=114.1
Q ss_pred CCEEEEEe--CC--cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEE
Q 007306 334 GSHLFSAS--GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 408 (608)
Q Consensus 334 ~~~l~s~~--d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 408 (608)
|+.|+.++ || .+.+.|+.+++..+.-.+.........++|++ .++-...+..|+-.|+.+.+....+......+-
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g 126 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKG 126 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccccc
Confidence 65555554 54 57777889888776655433322245567888 665555567899999999887666666666555
Q ss_pred EEEEe--CCCCEEEEEc----------------------CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 409 CLAYS--LSLNVLVSSG----------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 409 ~~~~~--~~~~~l~s~~----------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
...|. .|+..++-.- ....|.--|+.+++. ..+.... ..+..+.|+
T Consensus 127 ~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~------~~v~~~~----~wlgH~~fs 196 (386)
T PF14583_consen 127 YGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER------KVVFEDT----DWLGHVQFS 196 (386)
T ss_dssp EEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E------EEEEEES----S-EEEEEEE
T ss_pred ccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce------eEEEecC----ccccCcccC
Confidence 55553 4566654321 112455566666442 1122222 467889999
Q ss_pred CCCCEEEE-EeCC-----cEEEEECC-CCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-----cCCeEEEEeCCCCce
Q 007306 465 PDQIHLLS-IHEG-----QIDVYEAP-TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-----KSGHVKVFDTSTLEL 532 (608)
Q Consensus 465 p~~~~l~~-~~d~-----~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-----~dg~i~iwd~~~~~~ 532 (608)
|....+++ |.+| .-+||-++ .+...+.+........+..=-|.|||..|.--+ .+..|.-+|..+++.
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 98766666 7543 12555443 233333333222244556667899998776422 244677888888876
Q ss_pred eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCC----------------cEEEEeCCCCcc
Q 007306 533 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG----------------RVHVIEPLESEV 585 (608)
Q Consensus 533 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg----------------~v~iW~~~~~~~ 585 (608)
....... ++..+--++ |+.++|-=+.|. -|+++++..++.
T Consensus 277 ~~~~~~p------------~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 277 RRLMEMP------------WCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEEEEE-------------SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred eEEEeCC------------ceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 5433211 122444556 677766545442 456677776554
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.46 E-value=0.12 Score=49.81 Aligned_cols=224 Identities=13% Similarity=0.089 Sum_probs=122.4
Q ss_pred CCEEEEEe-CCcEEEEEcC-CCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe----------
Q 007306 334 GSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---------- 400 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~---------- 400 (608)
++.|+.|. +| +.++++. .....+... ...|..+...|+- .+++-+ |+.+.++++..-.....-
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 67888888 66 9999983 333333322 2238888888876 444443 599999998764333210
Q ss_pred ----eCccccEEEEE--EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe
Q 007306 401 ----KGHQNRITCLA--YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH 474 (608)
Q Consensus 401 ----~~~~~~v~~~~--~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~ 474 (608)
......+...+ -.+.+...+.....++|.+|............++.+.-. ..+.+++|. +..++++.
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICVGT 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEEEe
Confidence 01222344433 112333444444556888888765311100122212111 468889998 66788887
Q ss_pred CCcEEEEECCCCceeeeecCCCC----------CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeE--EEeceeec
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKM----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTAYA 542 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~~~ 542 (608)
.+...+.|+.++.....+..... ..++..+.. +++.+|++. |..-.+.|. .|+... .+.-.
T Consensus 156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~--- 228 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS--- 228 (275)
T ss_pred CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcC---
Confidence 78899999987765443322111 123333333 345666653 232223333 443332 22111
Q ss_pred cCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007306 543 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 587 (608)
Q Consensus 543 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~ 587 (608)
. .+.++++.. .+|+..+.+ .|.||++.+++...
T Consensus 229 -----~---~p~~~~~~~---pyli~~~~~-~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 229 -----S---APQSVAYSS---PYLIAFSSN-SIEVRSLETGELVQ 261 (275)
T ss_pred -----C---chhEEEEEC---CEEEEECCC-EEEEEECcCCcEEE
Confidence 1 133666644 477776654 59999999997643
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0011 Score=67.06 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=74.5
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEE-EEEEeCCCCEEEEEcCCCcEEEEECCCCceec
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 440 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 440 (608)
...+.-+.|+|.- .||.+..+|.|.++.+. .+.+.++..|...++ +++|.|||+.|+.|-.||+|++.|+.++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3456788999999 99999999999999887 677777876777777 99999999999999999999999999965443
Q ss_pred ccceeeeeccCCCCccceEEEEEcC
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHP 465 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp 465 (608)
..... .. ..|.++.|+|
T Consensus 99 ~~~~s-----~e---~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFS-----VE---TDISKGIWDR 115 (665)
T ss_pred ccccc-----cc---cchheeeccc
Confidence 32111 11 4577777763
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.29 E-value=0.39 Score=52.02 Aligned_cols=316 Identities=12% Similarity=0.048 Sum_probs=164.6
Q ss_pred eEEEeecCCeEEEeeccCCCCCCceeeE-eecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccce
Q 007306 224 SAVCAKSLEKSVNLKLQLINEPSECRTL-LLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNM 302 (608)
Q Consensus 224 ~l~~~~~d~~i~iWd~~~~~~~~~~~~~-~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~ 302 (608)
.++.|.++..+.+--... ....... .+...--...|.-..|--|+.+|.++..||.+.-+.+
T Consensus 550 ~~aVG~Ws~~~~~l~~~p---d~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~-------------- 612 (1096)
T KOG1897|consen 550 LLAVGLWSDISMILTFLP---DLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL-------------- 612 (1096)
T ss_pred EEEEEeecceEEEEEECC---CcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE--------------
Confidence 678888777766554431 1111111 1222112345666677778899999999999987643
Q ss_pred eeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEeCCcEEEEEcCCCceee-EecCCCCCeEEEEEcCCC---
Q 007306 303 ESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSASGGKISIFSLETFQTLA-TFANPPPIATYFILLPQD--- 375 (608)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~--- 375 (608)
|..+|.........--..++.--.|+ ...+++++|.-..+|.-+ ++.+. .+.. ..--..+.|+.+.
T Consensus 613 -----d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~-kev~~~c~f~s~a~~d 685 (1096)
T KOG1897|consen 613 -----DINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSL-KEVNHMCPFNSDAYPD 685 (1096)
T ss_pred -----EcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccch-HHhhhhcccccccCCc
Confidence 44444322111000123455555666 557777778776677644 33222 1110 0000122343333
Q ss_pred eEEEEeCCCcEEEEeCCCCc--eEEEeeCccccEEEEEEeCCCCEEEEEcC-----------C---CcEEEEECCCCcee
Q 007306 376 LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGA-----------D---AQLCVWDAVGWKKL 439 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----------d---~~i~vwd~~~~~~~ 439 (608)
.++++. .+.+++.-++.-+ .++++. -......+++.+....+++.+. . ..++++|-++.+..
T Consensus 686 ~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 344443 4455655444321 122222 2234455666653333333321 1 23677777775443
Q ss_pred cccceeeeeccCCCCccceEEEEEcCC-CCEEEEEe-----------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSIH-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
....+...... ..+.++.|..| +.++++|. .|.|.+|.+..+..++......-.+.+.++..
T Consensus 764 ~~hef~~~E~~-----~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~- 837 (1096)
T KOG1897|consen 764 SSHEFERNETA-----LSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE- 837 (1096)
T ss_pred eecccccccee-----eeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-
Confidence 33333211111 34666778887 67777642 26788888877444444422222455555442
Q ss_pred cCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 508 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
-+|+++|.- +..|++|++.+.+.+..-. ++ ...+. .+...- .++.++.|.--+++.+-.....+
T Consensus 838 fngkllA~I--n~~vrLye~t~~~eLr~e~-------~~-~~~~~--aL~l~v-~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 838 FNGKLLAGI--NQSVRLYEWTTERELRIEC-------NI-SNPII--ALDLQV-KGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred hCCeEEEec--CcEEEEEEccccceehhhh-------cc-cCCeE--EEEEEe-cCcEEEEeeccceEEEEEEeccC
Confidence 367777654 4689999999885554432 12 22233 455555 67888888877877776655444
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.00088 Score=41.55 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=34.2
Q ss_pred CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEE
Q 007306 394 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432 (608)
Q Consensus 394 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 432 (608)
++....+..|...|.++.|++++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778889999999999999999999999999996
No 377
>PHA02713 hypothetical protein; Provisional
Probab=97.24 E-value=0.029 Score=59.73 Aligned_cols=200 Identities=12% Similarity=0.006 Sum_probs=100.4
Q ss_pred CCC-eEEEEeCC------CcEEEEeCCCCceEEEeeC-ccccEEEEEEeCCCCEEEEEcCCC-----cEEEEECCCCcee
Q 007306 373 PQD-LFAFGFDD------SSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKL 439 (608)
Q Consensus 373 ~~~-~l~~~~~d------~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~ 439 (608)
-++ .+++||.+ ..+..||+.++.... +.. ....-......-+|+..+.|+.++ ++..||..+.+-.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 355 66777753 357889988765321 111 111111112233677888888764 4788998774321
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eC-----------------------CcEEEEECCCCceeeeecCC
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE-----------------------GQIDVYEAPTLNHTSQLVPD 495 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d-----------------------~~i~iwd~~~~~~~~~~~~~ 495 (608)
.+..++.... ....+++ +|+..+.| .+ ..+..||..+.+-...-..
T Consensus 381 ---~~~~mp~~r~----~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m- 450 (557)
T PHA02713 381 ---MLPDMPIALS----SYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF- 450 (557)
T ss_pred ---ECCCCCcccc----cccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-
Confidence 1111111111 1112222 45555554 32 2477788776543211111
Q ss_pred CCCCCeEEEEEecCCCEEEEEEcC------CeEEEEeCCC-CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 496 KMDLPITYATYSCDGKCIYVSCKS------GHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 496 ~~~~~v~~~~~s~~~~~l~sg~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
........+..-+|+..+.|+.+ ..+..||..+ .+-...-... ...... .++.. ++.+.++
T Consensus 451 -~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~--------~~r~~~-~~~~~--~~~iyv~ 518 (557)
T PHA02713 451 -WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE--------SRLSAL-HTILH--DNTIMML 518 (557)
T ss_pred -CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC--------cccccc-eeEEE--CCEEEEE
Confidence 01111122233456666667654 2467899887 4433221111 000111 22222 5789999
Q ss_pred EeCCC--cEEEEeCCCCccccccCCCCCCcc
Q 007306 569 GLTNG--RVHVIEPLESEVEWGKLPFTDSRE 597 (608)
Q Consensus 569 ~s~Dg--~v~iW~~~~~~~~~~~~~~~~~~~ 597 (608)
||.|| ++..||+.+. +|....|.....
T Consensus 519 Gg~~~~~~~e~yd~~~~--~W~~~~~~~~~~ 547 (557)
T PHA02713 519 HCYESYMLQDTFNVYTY--EWNHICHQHSNS 547 (557)
T ss_pred eeecceeehhhcCcccc--cccchhhhcCCc
Confidence 99998 7788888765 587776665443
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.014 Score=58.08 Aligned_cols=144 Identities=14% Similarity=0.119 Sum_probs=99.5
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE-------EEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 376 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-------LVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
++..+..-..++-.|+..|+.+..++.+.. |+-+.+.|+.+. -+.|-.|..|+-||.+-.... .+. ..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~-~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLA-VV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eee-ee
Confidence 556667777899999999999999987766 777778886532 234667899999998852211 111 22
Q ss_pred ccCCCC-ccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 449 TGLVPE-TTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 449 ~~~~~~-~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
.+|.-. ...-.|++-..+|..++.+.+|.|++||- .+...++..+ +-..+|..+..+.||++|+..+ +..+.+-++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222100 02355777777776666689999999998 6665555443 3488999999999999998765 455655554
No 379
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.17 E-value=0.022 Score=44.87 Aligned_cols=97 Identities=16% Similarity=0.227 Sum_probs=66.1
Q ss_pred eEEEEEe------CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEE
Q 007306 327 ISCFALR------GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAK 399 (608)
Q Consensus 327 v~~v~~s------~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 399 (608)
|+++++. .+.|++|+ |..|++|+-. +.+..+. ....|++++-...+.|+.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 5666665 25788888 9999999854 4555554 3456677776666689999999999999853 33444
Q ss_pred eeCccccEEEEEEeC---CC-CEEEEEcCCCcEE
Q 007306 400 LKGHQNRITCLAYSL---SL-NVLVSSGADAQLC 429 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~---~~-~~l~s~~~d~~i~ 429 (608)
.+. ...+.++.+.. || ..|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 443 23466666543 33 3588888888774
No 380
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.16 E-value=0.021 Score=45.01 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=63.6
Q ss_pred EEEEEEee-CC---CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 262 VVRLIYSH-SG---DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 262 V~~~~fsp-~g---~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
|++|++.. +| +.|++||.|..|++|+-..- ++.. .-...|.++.-. +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--------------~~Ei------------~e~~~v~~L~~~~~~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--------------VAEI------------TETDKVTSLCSLGGGR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--------------EEEE------------ecccceEEEEEcCCCE
Confidence 66777665 33 57999999999999864322 1111 144667777777 777
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE---cCCC--eEEEEeCCCcEE
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL---LPQD--LFAFGFDDSSIL 387 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~---~~~~--~l~~~~~d~~i~ 387 (608)
++.+- +|+|-+|+-. ..+...+.... +.++.+ ..|| .|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~--~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRS--QRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCc--ceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 88888 9999999753 34444443333 444443 4455 799999998774
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.14 E-value=0.088 Score=47.04 Aligned_cols=150 Identities=12% Similarity=0.033 Sum_probs=86.1
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCcc--------ccEEEEEEeCCCCEEE-EEcCCCcEEEEE--
Q 007306 364 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--------NRITCLAYSLSLNVLV-SSGADAQLCVWD-- 432 (608)
Q Consensus 364 ~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~-s~~~d~~i~vwd-- 432 (608)
...+.-..+|+|.+..|...-.=-.+....+.....+.+|. .--+.++|+.+.+.+. +-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecC
Confidence 34455667899933555432111122333333333333332 2234678887776654 445567787777
Q ss_pred CCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe-cCC
Q 007306 433 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDG 510 (608)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~ 510 (608)
..++.....+.+..+...........-.+++..+|.+.++. ..++|...|..+|+.+.++..+ ...|+++||. ++-
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGkn~ 266 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGKNL 266 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCCCc
Confidence 66655444443332222100000112245556678777776 6789999999999999999876 8889999997 444
Q ss_pred CEEEE
Q 007306 511 KCIYV 515 (608)
Q Consensus 511 ~~l~s 515 (608)
..+++
T Consensus 267 d~~yv 271 (310)
T KOG4499|consen 267 DILYV 271 (310)
T ss_pred cEEEE
Confidence 44443
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.09 E-value=0.093 Score=55.82 Aligned_cols=226 Identities=15% Similarity=0.099 Sum_probs=116.9
Q ss_pred CcEEEEEcCCCceeeEecC-CCCCeEEEEEcCCCeEEEEeCC-C-----cEEEEeCCCCceEEEeeCccccEEEEEEeCC
Q 007306 343 GKISIFSLETFQTLATFAN-PPPIATYFILLPQDLFAFGFDD-S-----SILVHCPCTKKTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d-~-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 415 (608)
..+..+|..+++....-.- ....-.+++...+...++|+.| | ++..||..+++....-.-...+...-.-.-+
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~ 380 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD 380 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC
Confidence 3577888877644333221 1222234444333377888888 3 6889999887644311111111111111226
Q ss_pred CCEEEEEcCCCc-----EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC------CcEEEEEC
Q 007306 416 LNVLVSSGADAQ-----LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE------GQIDVYEA 483 (608)
Q Consensus 416 ~~~l~s~~~d~~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d------~~i~iwd~ 483 (608)
|...|+|+.||. +-.||..+.+-....+.. ... ...-.+. -+|+..++ |.+ .++..||.
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~---~~r----~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML---TRR----SGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCC---cce----eeeEEEE--ECCEEEEEcCcCCCccccceEEEEcC
Confidence 888999998864 777888774321111111 100 1111122 23555555 433 35788998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEE
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 558 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 558 (608)
.+......-... ......-.-.-++...+.|+.|+ +|..||..+.+....-... . + ..... .++.
T Consensus 452 ~t~~W~~~~~M~--~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~--~--~--rs~~g--~~~~ 521 (571)
T KOG4441|consen 452 ETNTWTLIAPMN--TRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT--S--P--RSAVG--VVVL 521 (571)
T ss_pred CCCceeecCCcc--cccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc--c--c--ccccc--EEEE
Confidence 776543222111 11111112334677777888776 3778888887654431110 0 0 11111 2222
Q ss_pred ecCCCCEEEEEeCCC-----cEEEEeCCCCccccccCCC
Q 007306 559 HPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 559 sp~d~~~las~s~Dg-----~v~iW~~~~~~~~~~~~~~ 592 (608)
++...+.|+.|| +|..||+.+.+ |...++
T Consensus 522 ---~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~ 555 (571)
T KOG4441|consen 522 ---GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE 555 (571)
T ss_pred ---CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence 567888888886 78888887764 554443
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.06 E-value=0.1 Score=55.55 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=55.3
Q ss_pred CCEEEEEe-CC-----cEEEEEcCCCceeeEecCCCCCeEE-EEEcCCC-eEEEEeCCC------cEEEEeCCCCceEE-
Q 007306 334 GSHLFSAS-GG-----KISIFSLETFQTLATFANPPPIATY-FILLPQD-LFAFGFDDS------SILVHCPCTKKTKA- 398 (608)
Q Consensus 334 ~~~l~s~~-d~-----~i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~-~l~~~~~d~------~i~vwd~~~~~~~~- 398 (608)
|...+.|+ || ++-.||..+.+.-..-. ....... -...-+| ..++||.++ ++..||+.+++...
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 77777777 75 47778876543322111 1111112 2223456 777777554 57889988875432
Q ss_pred -EeeCccccEEEEEEeCCCCEEEEEcCCCc-----EEEEECCCCc
Q 007306 399 -KLKGHQNRITCLAYSLSLNVLVSSGADAQ-----LCVWDAVGWK 437 (608)
Q Consensus 399 -~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-----i~vwd~~~~~ 437 (608)
.+........ ++ .-++.+.+.|+.|+. |..||..+.+
T Consensus 460 ~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 460 APMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred CCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 2211111111 22 226778888887763 7778887743
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.19 Score=46.48 Aligned_cols=211 Identities=15% Similarity=0.047 Sum_probs=121.9
Q ss_pred EEEEcCCC--eEEEEeCCCc-EEEEeCCCCceEEEeeCcccc--EEEEEEeCCCCEEEEEcCC-----CcEEEEECCCCc
Q 007306 368 YFILLPQD--LFAFGFDDSS-ILVHCPCTKKTKAKLKGHQNR--ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWK 437 (608)
Q Consensus 368 ~~~~~~~~--~l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~ 437 (608)
.++++|.. -++.+-.-|+ ..++|..+.+...++...+++ .-.=.|+|||.+|...-.| |.|-+||.+.+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 56788876 5566666554 567898887665544321111 1112599999998865443 679999998521
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeC-------------------CcEEEEECCCCceeeeecCC--C
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHE-------------------GQIDVYEAPTLNHTSQLVPD--K 496 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d-------------------~~i~iwd~~~~~~~~~~~~~--~ 496 (608)
..+. -+..|. -....+.+.+||+.+++... -++.+.|..+|+++.+...+ .
T Consensus 152 ----qrvg-E~~t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 152 ----QRVG-EFSTHG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred ----ceec-ccccCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 1122 122333 24567899999999987321 13566776778777655444 3
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCC-----eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC
Q 007306 497 MDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 571 (608)
Q Consensus 497 ~~~~v~~~~~s~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 571 (608)
+.-.|..++..+||..++.+-..| --.+=....++.+..+........ .-.-|+-+++.+.+++...+|.=.
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~---~~anYigsiA~n~~~glV~lTSP~ 300 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTA---AFANYIGSIAANRRDGLVALTSPR 300 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHH---HHHhhhhheeecccCCeEEEecCC
Confidence 467788999999988766543222 111212223333333321100000 001234578887755555555545
Q ss_pred CCcEEEEeCCCCcccccc
Q 007306 572 NGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 572 Dg~v~iW~~~~~~~~~~~ 589 (608)
-+...+||..+|+..-..
T Consensus 301 GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 301 GNRAVIWDAATGAVVSEA 318 (366)
T ss_pred CCeEEEEEcCCCcEEecc
Confidence 667889999999864333
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.99 E-value=0.067 Score=56.88 Aligned_cols=186 Identities=9% Similarity=-0.008 Sum_probs=99.0
Q ss_pred CCeEEEEEe--CCEEEEEe-------CC--cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC---------
Q 007306 325 DSISCFALR--GSHLFSAS-------GG--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD--------- 383 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~-------d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d--------- 383 (608)
..+...+++ |+.++... |. .+.+++.. +.. +.+.. ....+.-.|+|+| .+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 356777788 66554433 33 44555542 222 33322 2237788999997 66655432
Q ss_pred ---CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEE---EECCCCceecccceeeeeccCCCCccc
Q 007306 384 ---SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV---WDAVGWKKLCSKFLHSFQTGLVPETTI 457 (608)
Q Consensus 384 ---~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (608)
+.+.+.++..+.... .....|..+.|+|||..++... ++.|.+ -....+...-..+.. +..+-. ..
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~-l~~~l~---~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPRE-VGPGLG---DT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEE-eecccC---Cc
Confidence 234333444443322 2345799999999999988765 577777 333333311111111 222222 23
Q ss_pred eEEEEEcCCCCEEEEEeC--CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 007306 458 VNHIQFHPDQIHLLSIHE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 524 (608)
Q Consensus 458 v~~v~~sp~~~~l~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i 524 (608)
+.++.|.+++.+++...+ ..++..++. |.....+.......++.+++-+++ -++....+|.+.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 578999999986654433 345555553 333222222222556777776653 4555556664433
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.96 E-value=0.0024 Score=39.46 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=33.2
Q ss_pred CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 007306 353 FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 390 (608)
Q Consensus 353 ~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd 390 (608)
+++...+..|...|.++.|++++ .+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35566777888999999999999 999999999999996
No 387
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0039 Score=63.17 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeE-EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 007306 324 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 324 ~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
...+.-+.|+ -..+|.+. +|.|.+..++ .+.+.++.-|...++ +++|.||| .|++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4556778888 56888888 9999999988 888888887777777 99999999 99999999999999999988776
Q ss_pred Eee-CccccEEEEEEeC
Q 007306 399 KLK-GHQNRITCLAYSL 414 (608)
Q Consensus 399 ~~~-~~~~~v~~~~~~~ 414 (608)
.+. .....|.++-|.|
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 532 2455677777764
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.90 E-value=0.29 Score=53.63 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=121.4
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE------------------
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------------------ 332 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------------------ 332 (608)
+..++.++.++.|.-.|..+++. +|............ .| .....+++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~------------lW~~d~~~~~~~~~--~~-~~cRGvay~~~p~~~~~~~~~~~p~~ 258 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE------------KWKFDPKLKTEAGR--QH-QTCRGVSYYDAPAAAAGPAAPAAPAD 258 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccc--cc-ccccceEEecCCcccccccccccccc
Confidence 45677778888888888888876 56533221110000 00 00011111
Q ss_pred eCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCe-------------EEEEEcC---CCeEEEEeC----------CCc
Q 007306 333 RGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-------------TYFILLP---QDLFAFGFD----------DSS 385 (608)
Q Consensus 333 s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v-------------~~~~~~~---~~~l~~~~~----------d~~ 385 (608)
++..++.++ |+.+.-.|.++|+.+..+... +.| ..+.-.| ++.+++|+. +|.
T Consensus 259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 259 CARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred cCCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 244677777 999999999999998776421 111 0111112 335555542 688
Q ss_pred EEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC-cEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 386 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
|+-+|.++|+.+..+..-....... .+.+.....++.+. ...-+|.+.+. +. +..+.. +..+.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~gl------vy-~ptGn~-------~pd~~ 401 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGL------VY-LPMGNQ-------TPDQW 401 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCe------EE-EeCCCc-------ccccc
Confidence 9999999999988775311111110 11333222222211 22334443311 11 111111 01111
Q ss_pred CCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCC-------CCeEEEEEec-CCC---EEEEEEcCCeEEEEeCCCCce
Q 007306 465 PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMD-------LPITYATYSC-DGK---CIYVSCKSGHVKVFDTSTLEL 532 (608)
Q Consensus 465 p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~-------~~v~~~~~s~-~~~---~l~sg~~dg~i~iwd~~~~~~ 532 (608)
...+.... -..++|.-.|.+||+..-.++...|. ....-+.+.. +|+ .++.++.+|.+++.|.++|+.
T Consensus 402 g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 402 GGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP 481 (764)
T ss_pred CCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence 11110111 13466777888888877666553231 1111122333 563 789999999999999999998
Q ss_pred eEEE
Q 007306 533 RCQI 536 (608)
Q Consensus 533 ~~~~ 536 (608)
+...
T Consensus 482 l~~~ 485 (764)
T TIGR03074 482 IVPV 485 (764)
T ss_pred Eeec
Confidence 7764
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.88 E-value=0.46 Score=45.76 Aligned_cols=278 Identities=13% Similarity=0.052 Sum_probs=126.1
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 337 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l 337 (608)
..++..|.|..+..-+++| ..+.| +....+.. -|.......- ........+|.|. ...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG-~~g~i--l~T~DGG~------------tW~~~~~~~~-----~~~~~~l~~I~f~~~~g~ 75 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVG-AYGTI--LKTTDGGK------------TWQPVSLDLD-----NPFDYHLNSISFDGNEGW 75 (302)
T ss_dssp SS-EEEEEESSSS-EEEEE-TTTEE--EEESSTTS------------S-EE-----S----------EEEEEEEETTEEE
T ss_pred CCceEEEEEecCCEEEEEe-cCCEE--EEECCCCc------------cccccccCCC-----ccceeeEEEEEecCCceE
Confidence 6689999999555555554 45543 44433332 2432211000 0012235677777 4444
Q ss_pred EEEeCCcEEEEEcCCCceeeEec---CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc-eEEEeeCccccEEEEEEe
Q 007306 338 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 338 ~s~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~ 413 (608)
++|..+ +.+...+.|+.-..+. .-++....+....++.....+..|.|+.=. +.|+ -......-.+.+..+..+
T Consensus 76 ivG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 76 IVGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp EEEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred EEcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence 444455 3344444454433332 122333344444444222234445544322 2332 223334455778888899
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC-CCCceeee-
Q 007306 414 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA-PTLNHTSQ- 491 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~-~~~~~~~~- 491 (608)
+||++++++..-....-||--... ..+.. ..-. ..|.+|.|+|++...+++..+.|+.=+. ...+.-..
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~---w~~~~---r~~~---~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~ 224 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTT---WQPHN---RNSS---RRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEP 224 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS----EEEE-----SS---S-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---
T ss_pred CCCcEEEEECcccEEEEecCCCcc---ceEEc---cCcc---ceehhceecCCCCEEEEeCCcEEEEccCCCCccccccc
Confidence 999988887665555677754310 11111 1111 5799999999998888788888888772 22222111
Q ss_pred -ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 492 -LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 492 -~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.........+..++|.+++...++|+ .|.+ +...+.|+.-...... ..-....+ .+.|.+ + +.-...+
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~-----~~~~~n~~--~i~f~~-~-~~gf~lG 293 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG-----ENVPSNLY--RIVFVN-P-DKGFVLG 293 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG-----TTSSS-----EEEEEE-T-TEEEEE-
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccc-----cCCCCceE--EEEEcC-C-CceEEEC
Confidence 11111244589999999888777665 4544 4455566544443321 00123355 888876 3 3444555
Q ss_pred CCCcEEEE
Q 007306 571 TNGRVHVI 578 (608)
Q Consensus 571 ~Dg~v~iW 578 (608)
.+|.|-=|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 78876544
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.86 E-value=0.7 Score=47.53 Aligned_cols=194 Identities=11% Similarity=0.012 Sum_probs=106.5
Q ss_pred EEEEcCCC-eEEEE-eCCC----cEEEEeCCCCceEEEe-eCccccEEEEEEeCCCCEEEEEcCCC-----------cEE
Q 007306 368 YFILLPQD-LFAFG-FDDS----SILVHCPCTKKTKAKL-KGHQNRITCLAYSLSLNVLVSSGADA-----------QLC 429 (608)
Q Consensus 368 ~~~~~~~~-~l~~~-~~d~----~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~-----------~i~ 429 (608)
...++|+| +++.+ +..| .++++|+.+|+.+... .. .....+.|.++++.|+....+. .|+
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 56789999 66544 4444 5999999999776432 21 1123499999988877665433 377
Q ss_pred EEECCCCceecccceeeeeccCCCCccc-eEEEEEcCCCCEEEE-E---eC-CcEEEEECCCC----ceeeeecCCCCCC
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTI-VNHIQFHPDQIHLLS-I---HE-GQIDVYEAPTL----NHTSQLVPDKMDL 499 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~~sp~~~~l~~-~---~d-~~i~iwd~~~~----~~~~~~~~~~~~~ 499 (608)
.|.+.+..... .. ++....+ .. ...+..++|+++++. + .+ ..+++.|+..+ .....+... ..+
T Consensus 206 ~~~~gt~~~~d---~l-vfe~~~~--~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~ 278 (414)
T PF02897_consen 206 RHKLGTPQSED---EL-VFEEPDE--PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDG 278 (414)
T ss_dssp EEETTS-GGG----EE-EEC-TTC--TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS
T ss_pred EEECCCChHhC---ee-EEeecCC--CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCc
Confidence 78877643211 11 3333331 23 668899999999887 3 23 45888898764 222333221 123
Q ss_pred CeEEEEEecCCCEEEEEEc---CCeEEEEeCCCCce---eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCC
Q 007306 500 PITYATYSCDGKCIYVSCK---SGHVKVFDTSTLEL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 573 (608)
Q Consensus 500 ~v~~~~~s~~~~~l~sg~~---dg~i~iwd~~~~~~---~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 573 (608)
....+... .+.+++.... ++.|.-.++..... ...+..+ .....+..+.... +.++++...++
T Consensus 279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~--------~~~~~l~~~~~~~--~~Lvl~~~~~~ 347 (414)
T PF02897_consen 279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE--------DEDVSLEDVSLFK--DYLVLSYRENG 347 (414)
T ss_dssp -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----------SSSEEEEEEEEET--TEEEEEEEETT
T ss_pred eEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC--------CCceeEEEEEEEC--CEEEEEEEECC
Confidence 33334333 4444443322 36787788877653 2222221 2222333444432 34555555665
Q ss_pred --cEEEEeCC
Q 007306 574 --RVHVIEPL 581 (608)
Q Consensus 574 --~v~iW~~~ 581 (608)
.|+++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 68888888
No 391
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.81 E-value=0.15 Score=55.93 Aligned_cols=230 Identities=10% Similarity=0.012 Sum_probs=122.7
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCC--------eEEEEEc----------------CCC-eEEEEeCCCcEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPI--------ATYFILL----------------PQD-LFAFGFDDSSIL 387 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~-~l~~~~~d~~i~ 387 (608)
+..++.++ ++.|.-.|..+|+.+..+...... ...+++. ..+ .++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 66777777 899999999999998887643211 1112221 123 788899999999
Q ss_pred EEeCCCCceEEEeeCccccEE-------------EEEEeC--CCCEEEEEcC----------CCcEEEEECCCCceeccc
Q 007306 388 VHCPCTKKTKAKLKGHQNRIT-------------CLAYSL--SLNVLVSSGA----------DAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 388 vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~s~~~----------d~~i~vwd~~~~~~~~~~ 442 (608)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++++..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 22111 111112 2345555642 688999999997654322
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEEEeCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 520 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg 520 (608)
.. +.. . .... -+.+.....+..+ ...-+|.+++....-. +...+ .+-...+........+
T Consensus 353 ~~-----g~p---~-~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt---Gn~~p----d~~g~~r~~~~n~y~~ 414 (764)
T TIGR03074 353 DP-----GNP---D-PTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM---GNQTP----DQWGGDRTPADEKYSS 414 (764)
T ss_pred ec-----CCC---C-cccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC---CCccc----cccCCccccCcccccc
Confidence 21 110 0 0000 0122222111111 2334444433321110 00000 0000000000111246
Q ss_pred eEEEEeCCCCceeEEEeceeeccCCCcccccc-------cEEEEEecCCC---CEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 521 HVKVFDTSTLELRCQINLTAYAQPGTISLELY-------PLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 521 ~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~-------~~~v~~sp~d~---~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
.|.-.|.+||+....+... | +.++ .+-+.+...++ ..++.++.+|.+++.|..+|+..|...
T Consensus 415 slvALD~~TGk~~W~~Q~~------~--hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 415 SLVALDATTGKERWVFQTV------H--HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEEeCCCCceEEEeccc------C--CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 6778889999888877542 1 1111 11112211134 389999999999999999999988754
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.67 E-value=0.22 Score=53.14 Aligned_cols=185 Identities=13% Similarity=0.089 Sum_probs=91.3
Q ss_pred CCEEEEEe-C------CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEE--
Q 007306 334 GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKA-- 398 (608)
Q Consensus 334 ~~~l~s~~-d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~-- 398 (608)
+...+.|+ + ..+..||..+..-...-.-....-......-+| ..+.||.++ ++..||+.+++...
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 55666666 4 246778887654321111111111112223356 667777654 48889988764332
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCCC-----------------------cEEEEECCCCceecccceeeeeccCCCCc
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGADA-----------------------QLCVWDAVGWKKLCSKFLHSFQTGLVPET 455 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 455 (608)
.+.........+ .-+|+..+.|+.++ .+..||..+.+-. .+..+.....
T Consensus 384 ~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~---~v~~m~~~r~--- 455 (557)
T PHA02713 384 DMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE---TLPNFWTGTI--- 455 (557)
T ss_pred CCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe---ecCCCCcccc---
Confidence 111111111112 23677788887653 4677887764321 1111111111
Q ss_pred cceEEEEEcCCCCEEEEE-eC------CcEEEEECCC-Cce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--eEE
Q 007306 456 TIVNHIQFHPDQIHLLSI-HE------GQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVK 523 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~~-~d------~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg--~i~ 523 (608)
.. +++. -+++..+.| .+ ..+..||..+ .+- +..+... ......+ .-+|+..++|+.|| .+.
T Consensus 456 -~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r~~~~~~--~~~~~iyv~Gg~~~~~~~e 528 (557)
T PHA02713 456 -RP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--LSALHTI--LHDNTIMMLHCYESYMLQD 528 (557)
T ss_pred -cC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--cccceeE--EECCEEEEEeeecceeehh
Confidence 11 2222 234444443 32 2467899876 443 2222211 1112222 23778888998888 777
Q ss_pred EEeCCCCcee
Q 007306 524 VFDTSTLELR 533 (608)
Q Consensus 524 iwd~~~~~~~ 533 (608)
.||..+.+-.
T Consensus 529 ~yd~~~~~W~ 538 (557)
T PHA02713 529 TFNVYTYEWN 538 (557)
T ss_pred hcCccccccc
Confidence 8888877644
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.58 E-value=0.0077 Score=39.47 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=29.8
Q ss_pred cEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 007306 553 PLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 588 (608)
Q Consensus 553 ~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~ 588 (608)
+..++|+| ..+++|.++.||.|.++.+ +++..|.
T Consensus 14 v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 14 VSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred EEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 55999999 7999999999999999999 7776663
No 394
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.089 Score=57.18 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=75.3
Q ss_pred eEEEEEeCCEEEEEe-CCcEEEEEcCCCce-eeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCc
Q 007306 327 ISCFALRGSHLFSAS-GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH 403 (608)
Q Consensus 327 v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 403 (608)
+.+.+.-+..++.|+ .|.+...|+...-. ...=....++|++++|+.+| .++.|-.+|.|.+||+..++.++.+..|
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 333333366777777 68888888764311 11112345789999999999 9999999999999999999999888877
Q ss_pred cccEEEE---EEeCCCCEEEEEcCCCcEEEEEC
Q 007306 404 QNRITCL---AYSLSLNVLVSSGADAQLCVWDA 433 (608)
Q Consensus 404 ~~~v~~~---~~~~~~~~l~s~~~d~~i~vwd~ 433 (608)
..+.+.+ .+..++..+.++...|. +|.+
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6666554 44556667888777776 5554
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.013 Score=63.34 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecC
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP 494 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 494 (608)
+..++.|+..|.+-..|....- .++. ...+.. ++|++++|+.+|+.++.| .+|.|.+||+..++.++.+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL----~~~~--~ne~v~--~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL----GPLH--QNERVQ--GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc----chhh--cCCccC--CcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 4568888888999888877621 1111 111221 789999999999999998 899999999999998888775
Q ss_pred CCC-CCCeEEEEEecCCCEEEEEEcCCe
Q 007306 495 DKM-DLPITYATYSCDGKCIYVSCKSGH 521 (608)
Q Consensus 495 ~~~-~~~v~~~~~s~~~~~l~sg~~dg~ 521 (608)
+++ ...+..+.+..++..++++...|.
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 433 233444555566667888777776
No 396
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.83 Score=42.75 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=99.7
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
-...|.++.|+|+.+.|++......-.|| =...|.+++.....+ -..-..+.|. ++.
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVE---------------------lt~~GdlirtiPL~g-~~DpE~Ieyig~n~ 141 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVE---------------------LTKEGDLIRTIPLTG-FSDPETIEYIGGNQ 141 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEE---------------------EecCCceEEEecccc-cCChhHeEEecCCE
Confidence 45569999999999999988877665544 234455554443332 2344567888 666
Q ss_pred EEEEe--CCcEEEEEcCCCceeeEe----------cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc-e--EEEe
Q 007306 337 LFSAS--GGKISIFSLETFQTLATF----------ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK-T--KAKL 400 (608)
Q Consensus 337 l~s~~--d~~i~vwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~-~--~~~~ 400 (608)
++.+. ++.+.++.+........+ .....+.-.++|.|.+ .|..+-+-.-+.||....+. . ....
T Consensus 142 fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 142 FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 66666 788888877654322211 1225567789999999 88888777777777655332 1 1111
Q ss_pred eCc-------cccEEEEEEeC-CCCEEEEEcCCCcEEEEECCC
Q 007306 401 KGH-------QNRITCLAYSL-SLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 401 ~~~-------~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~ 435 (608)
..+ -..|.++.|++ .+..++-+..++.+.-.|...
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 111 23467788887 566677777788888777765
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.41 E-value=0.82 Score=42.59 Aligned_cols=184 Identities=15% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCeEEEEE-e-CCEEEEEe-CC--cEEEEEcCCCceeeEecCCCC-CeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 007306 325 DSISCFAL-R-GSHLFSAS-GG--KISIFSLETFQTLATFANPPP-IATYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 325 ~~v~~v~~-s-~~~l~s~~-d~--~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
.-...+.| . |.++-+.+ -| .|+.+|+.+|+......-... ---.++...|....-.-.++...+||..+-+.+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 33457788 4 55555665 44 799999999998776653321 2234444444444445678999999999988888
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCC
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG 476 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~ 476 (608)
++.- .+.=..++ .|++.|+.......++++|..+.+......+. ..+.. -..++.+.+- +| .+.+ - ...
T Consensus 125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~--~~g~p--v~~LNELE~i-~G-~IyANVW~td 195 (264)
T PF05096_consen 125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT--DNGRP--VSNLNELEYI-NG-KIYANVWQTD 195 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E--ETTEE-----EEEEEEE-TT-EEEEEETTSS
T ss_pred EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE--ECCEE--CCCcEeEEEE-cC-EEEEEeCCCC
Confidence 7763 34445555 46777777777889999998875543332222 11111 0356667776 44 4555 4 667
Q ss_pred cEEEEECCCCceeeeecCC----------C---CCCCeEEEEEecCCCEEEEEE
Q 007306 477 QIDVYEAPTLNHTSQLVPD----------K---MDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 477 ~i~iwd~~~~~~~~~~~~~----------~---~~~~v~~~~~s~~~~~l~sg~ 517 (608)
.|...|..+|+.+..+... . ...-...+|+.|..+.++..+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 8888999999876654211 0 135688999998776555444
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.4 Score=44.75 Aligned_cols=170 Identities=8% Similarity=0.076 Sum_probs=106.1
Q ss_pred eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcE
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQI 478 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i 478 (608)
..+-...+.++.|+|+.+.|++......-.|+=...|+.....++. .. ...-.|.+..+|++.++- .++.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g~-------~DpE~Ieyig~n~fvi~dER~~~l 152 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-GF-------SDPETIEYIGGNQFVIVDERDRAL 152 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-cc-------CChhHeEEecCCEEEEEehhcceE
Confidence 3455556999999999999988887777777766665555544444 11 234467888888888885 78888
Q ss_pred EEEECCCCceeee-----ec--CCCC-CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccc-
Q 007306 479 DVYEAPTLNHTSQ-----LV--PDKM-DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL- 549 (608)
Q Consensus 479 ~iwd~~~~~~~~~-----~~--~~~~-~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~- 549 (608)
.++.+.....+.. +. ...+ +...-.++|+|....++.+-+-+-+.||.+..+.. .+..+.. .++...
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~--~l~~~~~--~~~~~~~ 228 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS--SLSVHAS--LDPTADR 228 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc--ccccccc--cCccccc
Confidence 8888765432211 11 1112 66788999999999999998888777777663321 1110100 011011
Q ss_pred ccc---cEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 550 ELY---PLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 550 ~v~---~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
.++ +.++.|++..+.+|+-+..++.+.--+..
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111 33678887556666666666666655554
No 399
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.25 E-value=1.5 Score=43.85 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=102.5
Q ss_pred CCCEEEEEe-CCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-C----
Q 007306 270 SGDFLVALT-QTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-G---- 342 (608)
Q Consensus 270 ~g~~l~s~s-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d---- 342 (608)
+.++|+..+ ..+.|.|.|+.+... .+++...-..+.+... .+-..+-+.-+.- |+.++++- |
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr---------~P~l~KvIe~~ev~~k--~g~s~PHT~Hclp~G~imIS~lGd~~G~ 154 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR---------KPRLHKVIEPEEVFEK--TGLSRPHTVHCLPDGRIMISALGDADGN 154 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT---------S-EEEEEE-HHHHHHH--H-EEEEEEEEE-SS--EEEEEEEETTS-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC---------CCceEeeeCHHHHHhh--cCCCCCceeeecCCccEEEEeccCCCCC
Confidence 456788777 478999999875532 1222221111000000 0001111111112 55666653 2
Q ss_pred --CcEEEEEcCCCceeeEecCCCC---CeEEEEEcCCC-eEEEEe--------------------CCCcEEEEeCCCCce
Q 007306 343 --GKISIFSLETFQTLATFANPPP---IATYFILLPQD-LFAFGF--------------------DDSSILVHCPCTKKT 396 (608)
Q Consensus 343 --~~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~-~l~~~~--------------------~d~~i~vwd~~~~~~ 396 (608)
|.+.+.|-++.+.......... --..+-|.|.. .+++.. ...++.+||+.+.+.
T Consensus 155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4688888888777776654322 23556677766 666543 345899999999999
Q ss_pred EEEeeCcc--ccEEEEEEeC--CCCE-EEEEcCCCcEEEEEC-CCCceecccceeeeeccC---------------CCCc
Q 007306 397 KAKLKGHQ--NRITCLAYSL--SLNV-LVSSGADAQLCVWDA-VGWKKLCSKFLHSFQTGL---------------VPET 455 (608)
Q Consensus 397 ~~~~~~~~--~~v~~~~~~~--~~~~-l~s~~~d~~i~vwd~-~~~~~~~~~~~~~~~~~~---------------~~~~ 455 (608)
++++.--. ..+..+.|.. +..+ ++.+....+|..|-- ..++-...+.+. +.... .|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~-ip~~~v~~~~lp~ml~~~~~~P-- 311 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVID-IPAKKVEGWILPEMLKPFGAVP-- 311 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEE-E--EE--SS---GGGGGG-EE---
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEE-CCCcccCcccccccccccccCC--
Confidence 99887532 2355666644 4444 333334555555533 333322222222 22110 01
Q ss_pred cceEEEEEcCCCCEEEEE--eCCcEEEEECCCC---ceeeeecCCCC--------------CCCeEEEEEecCCCEEEEE
Q 007306 456 TIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTL---NHTSQLVPDKM--------------DLPITYATYSCDGKCIYVS 516 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~---~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~sg 516 (608)
.-|+.|.+|.|.++|.++ ..|.|+.||+..- +++.++..++. .+...-+..|-||+.|+..
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 458999999999999995 6899999999753 23333222110 1223557788888887765
Q ss_pred E
Q 007306 517 C 517 (608)
Q Consensus 517 ~ 517 (608)
+
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 400
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=0.011 Score=52.58 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=58.4
Q ss_pred EEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCC-CceeeeecCCC
Q 007306 419 LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT-LNHTSQLVPDK 496 (608)
Q Consensus 419 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~ 496 (608)
+...+.||.|+-++++..+........ ... . ...-.-+..+++ +.+|.|++|...- +.....+.. .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~-~~e--------~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERF-IDE--------G--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-G 100 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhh-hhc--------c--eeecccCceEEeecccceEEEecCCccchHHHhhhc-c
Confidence 444567888888887663211111000 001 1 111122455666 5899999998752 222222211 1
Q ss_pred CCCCeE-EEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 497 MDLPIT-YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 497 ~~~~v~-~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
...|. -+.-..++.+.++++.||.|+.|++..++.+...
T Consensus 101 -~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 101 -EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred -cccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 22222 2223345668999999999999999988877655
No 401
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.0095 Score=56.49 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHhhcCcc--------ccHHHHHHHHhcCCHHHHHHHHhhc-ccCCCCCcceeehhHHhh
Q 007306 16 LITLIMKFLEEENFKESLQALEQESKIF--------FNVHRFGEIVMNGEWEKAEKYLSAF-TKLDDSNHSKKMFFELRK 86 (608)
Q Consensus 16 ivrli~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~ 86 (608)
+-|+|..||..+||-.+|..|-++|.+. .++..+++++++|+...|+.-.+.- ..+. ..-..++|- ++.
T Consensus 118 l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk-K~~S~lEf~-lRl 195 (389)
T KOG0396|consen 118 LDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK-KEESSLEFQ-LRL 195 (389)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hccchhhhH-HHH
Confidence 3599999999999999999999999985 2488999999999999888877542 0000 112334666 899
Q ss_pred hHHHHHHhhcC
Q 007306 87 HKYCEALCRQQ 97 (608)
Q Consensus 87 ~~~le~l~~~~ 97 (608)
|+|+|++..++
T Consensus 196 QefIELi~~~~ 206 (389)
T KOG0396|consen 196 QEFIELIKVDN 206 (389)
T ss_pred HHHHHHHHhcc
Confidence 99999999875
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.15 E-value=0.021 Score=37.41 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=28.6
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEec
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKW 288 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~ 288 (608)
-...|.+++|+|...++|.++.+|.|.++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 3567999999999999999999999999987
No 403
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=1.1 Score=44.27 Aligned_cols=154 Identities=10% Similarity=0.112 Sum_probs=98.5
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~ 297 (608)
|..|.+....+-..|.+.-|-+...+ +.....+.+. ..++|.++.||+|.+.||.--.+++|.+.+....+....
T Consensus 29 FfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~---d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~- 103 (657)
T KOG2377|consen 29 FFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMD---DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE- 103 (657)
T ss_pred eeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeec---CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH-
Confidence 66666666666667777788776532 2222333333 467999999999999999999999999887744432100
Q ss_pred cccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCC-CceeeEecCCCCCeEEEEEcCCC
Q 007306 298 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPPPIATYFILLPQD 375 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~ 375 (608)
+ +.++. ..+..|....|+ ..-+|...+.-+-+|-+.. .+.++..+.+...|.-..|.++.
T Consensus 104 ----------~--~~~ck------~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 104 ----------Y--TQECK------TKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred ----------H--HHHhc------cCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEcccc
Confidence 0 00011 234558888898 7778877876677776643 34456666788888888888887
Q ss_pred --eE-EEEeCCCcEEEEeCCCC
Q 007306 376 --LF-AFGFDDSSILVHCPCTK 394 (608)
Q Consensus 376 --~l-~~~~~d~~i~vwd~~~~ 394 (608)
.+ +++-..+++.=+.++++
T Consensus 166 ~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 166 AVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred ceEeeeccccccccccEEEeec
Confidence 33 33324444444444444
No 404
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.00 E-value=2.1 Score=43.30 Aligned_cols=84 Identities=10% Similarity=0.103 Sum_probs=54.3
Q ss_pred cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC-----------------
Q 007306 404 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----------------- 466 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~----------------- 466 (608)
...+.++..+|++++.++...=|.|.++|+.++. .++ +.+|... ..+.-+.....
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~-----vvr-mWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGI-----VVR-MWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh-----hhh-hhccCcc--ceEEEEEeecccccccccccccCCCCcc
Confidence 3457789999999998888778999999998843 333 3444331 11111111110
Q ss_pred CCEEEE-E-eCCcEEEEECCCCceeeeecCC
Q 007306 467 QIHLLS-I-HEGQIDVYEAPTLNHTSQLVPD 495 (608)
Q Consensus 467 ~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~ 495 (608)
..+|+. . .-|.|.||++++|..+..+..+
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 124444 3 7889999999999888777653
No 405
>PRK13684 Ycf48-like protein; Provisional
Probab=95.94 E-value=2 Score=42.60 Aligned_cols=157 Identities=12% Similarity=0.062 Sum_probs=86.8
Q ss_pred cccEEEEEEeCCCCEEEEEcCCCcEEE-EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEE
Q 007306 404 QNRITCLAYSLSLNVLVSSGADAQLCV-WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYE 482 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d~~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd 482 (608)
...+.++.+.|++.+++++ ..|.+.. +|-.. ........... ..++++.+.++++.++++..|.+++=+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg------~tW~~~~~~~~---~~l~~i~~~~~g~~~~vg~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQ------TAWTPHQRNSS---RRLQSMGFQPDGNLWMLARGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCC------CeEEEeeCCCc---ccceeeeEcCCCCEEEEecCCEEEEcc
Confidence 4568889999988766554 4555443 22111 11111111111 578899999999988888777765433
Q ss_pred CCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec
Q 007306 483 APTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 483 ~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
...|..-.....+ .....+.++.+.+++..+++| .+|.|. .....|+.-....... +- ....+ .+.|..
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~----~~-~~~~~--~~~~~~ 312 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE----EV-PSNFY--KIVFLD 312 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC----CC-CcceE--EEEEeC
Confidence 4444432222111 013457889999988766555 567665 3445555333322100 10 11233 677765
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 007306 561 LEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~ 581 (608)
++..++ .+..|.|.-|+-.
T Consensus 313 -~~~~~~-~G~~G~il~~~~~ 331 (334)
T PRK13684 313 -PEKGFV-LGQRGVLLRYVGS 331 (334)
T ss_pred -CCceEE-ECCCceEEEecCC
Confidence 455555 5578888877653
No 406
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.91 E-value=0.9 Score=42.95 Aligned_cols=150 Identities=19% Similarity=0.079 Sum_probs=84.0
Q ss_pred cEEEEEEeCCCCEEEEEc---CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEE
Q 007306 406 RITCLAYSLSLNVLVSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 481 (608)
Q Consensus 406 ~v~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iw 481 (608)
.+.+.+++++++.++... ....+.++..... ......+ ..+....|++++...++. .+...+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------~~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------VRPVLTG-----GSLTRPSWDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------ceeeccC-----CccccccccCCCCEEEEEcCCCceEEE
Confidence 688999999999877655 3344555554331 1111222 357788999998777764 44555555
Q ss_pred -ECCCCcee-eeecCCCCCCCeEEEEEecCCCEEEEEE---cCCeEEEEeCC---CCceeEEEeceeeccCCCccccccc
Q 007306 482 -EAPTLNHT-SQLVPDKMDLPITYATYSCDGKCIYVSC---KSGHVKVFDTS---TLELRCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 482 -d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~sg~---~dg~i~iwd~~---~~~~~~~~~~~~~~~~g~~~~~v~~ 553 (608)
+..++... ...........|..+.+||||..++.-. .++.|++=-+. .+.......+..... .....+
T Consensus 93 ~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~----~~~~~v 168 (253)
T PF10647_consen 93 RDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP----PLLSDV 168 (253)
T ss_pred EecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc----cccCcc
Confidence 33333322 1222111122899999999999888655 35778776654 221111111111110 111225
Q ss_pred EEEEEecCCCCEEEEEeCC
Q 007306 554 LVIAAHPLEPNRIALGLTN 572 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s~D 572 (608)
+.++|.+ +..+++.+...
T Consensus 169 ~~v~W~~-~~~L~V~~~~~ 186 (253)
T PF10647_consen 169 TDVAWSD-DSTLVVLGRSA 186 (253)
T ss_pred eeeeecC-CCEEEEEeCCC
Confidence 5999999 66666665543
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.87 E-value=0.37 Score=50.90 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe--cCCCEEEEEEcCCeEEEEeCC-----C
Q 007306 458 VNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGKCIYVSCKSGHVKVFDTS-----T 529 (608)
Q Consensus 458 v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~sg~~dg~i~iwd~~-----~ 529 (608)
.+-+.-+.-++..++. ....+.|||.+.+.....-.. ...+.|..+.|. |+|+.+++.+-.+.|.+|.-. .
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 4445555556665564 556799999988875444332 237889999997 799999999999999998542 1
Q ss_pred ----CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 530 ----LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 530 ----~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
-..+..+... .++.++|. +..|.+ +|..++.+| ..+.|++-.
T Consensus 111 ~~p~w~~i~~i~i~-----~~T~h~Ig--ds~Wl~-~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDIS-----SHTPHPIG--DSIWLK-DGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEee-----cCCCCCcc--ceeEec-CCeEEEEeC--CEEEEECCC
Confidence 1223333222 45566666 899999 675555443 468888753
No 408
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.83 E-value=1.5 Score=40.50 Aligned_cols=202 Identities=10% Similarity=-0.004 Sum_probs=127.8
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
.-..++-.||| .-+++...+.|--.|..+|+....--+.......|..-|||..-++-+.. .|.-.|-++.+.. .
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt---~ 138 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT---R 138 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE---E
Confidence 34567888999 88888888999999999998876655666667788889998877664433 5656666554321 1
Q ss_pred eeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
.. +...|.. .......|.+.|.+-+++..|.---.|-. ...+..+... ....-+.++..|||..-++.-.++.|-
T Consensus 139 f~-lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa-~~~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaia 213 (353)
T COG4257 139 FP-LPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPA-RNVISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIA 213 (353)
T ss_pred ee-cccccCC--CcccceeeCCCccEEEeeccccceecCcc-cCceeeeccC-CCCCCcceEECCCCcEEEEeccccceE
Confidence 12 2333332 56788999999998888543322112221 1223344333 245567788999999888887888888
Q ss_pred EEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 524 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 524 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
..|..++... .+.... +-+.+ .+ .+--+| -+..-+|-...+.+..+|+....
T Consensus 214 ridp~~~~ae-v~p~P~----~~~~g-sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 214 RIDPFAGHAE-VVPQPN----ALKAG-SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EcccccCCcc-eecCCC----ccccc-cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence 8888777432 222211 10011 11 233344 46777777777888888887654
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.74 E-value=1.5 Score=39.60 Aligned_cols=204 Identities=17% Similarity=0.144 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCCceeeE-ecCCCCCeEEEEEc-CCC---eEEEEeCCCcEEEEeCCC--CceEEEee---C--ccccEEE
Q 007306 342 GGKISIFSLETFQTLAT-FANPPPIATYFILL-PQD---LFAFGFDDSSILVHCPCT--KKTKAKLK---G--HQNRITC 409 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~-~~~---~l~~~~~d~~i~vwd~~~--~~~~~~~~---~--~~~~v~~ 409 (608)
.+.|.-||..+.+..+. +.+.. +.++.+- .++ +.+.++..-.|.-||-.. -....++. . ...+.+.
T Consensus 36 ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~ND 113 (310)
T KOG4499|consen 36 AGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLND 113 (310)
T ss_pred cCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhccccc
Confidence 57777799887554432 33222 2233332 222 333333333445577332 22223311 1 2355667
Q ss_pred EEEeCCCCEEEEEcC-C---------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE--EeCCc
Q 007306 410 LAYSLSLNVLVSSGA-D---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS--IHEGQ 477 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~-d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~--~~d~~ 477 (608)
-..+|+|++++ |.+ | |.++.|-... .+..+. +.. +--+.++|+.+.+.+.. +.+-.
T Consensus 114 gkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~-~~v---~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 114 GKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGH-------QVELIW-NCV---GISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred CccCCCCceee-eeeccccccccccccEEEEeccCC-------Cceeee-hhc---cCCccccccccCcEEEEEccCceE
Confidence 77899999844 332 1 3344443322 111011 111 22346889988887776 46667
Q ss_pred EEEEE--CCCCce-----eeeecCCC--CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcc
Q 007306 478 IDVYE--APTLNH-----TSQLVPDK--MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 548 (608)
Q Consensus 478 i~iwd--~~~~~~-----~~~~~~~~--~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~ 548 (608)
|.-|| ..+|.. +..+.... .....-.+++..+|++.++.-..++|...|..+|+.+..+... .
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--------t 253 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--------T 253 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--------C
Confidence 87777 555542 22221100 0122234556778888888888899999999999999888743 2
Q ss_pred cccccEEEEEecCCCCEEEEE
Q 007306 549 LELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 549 ~~v~~~~v~~sp~d~~~las~ 569 (608)
. .+++++|--.+-..|.+.
T Consensus 254 ~--qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 254 P--QITSCCFGGKNLDILYVT 272 (310)
T ss_pred C--ceEEEEecCCCccEEEEE
Confidence 2 255889875333444433
No 410
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.74 E-value=1.3 Score=44.65 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=110.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceEEEeeCc--cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc
Q 007306 373 PQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 373 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
-++.+.++..+|.|.-.|..+++.+.....- ...+..-.+..+|+ +..++.++.++.+|.++++.........
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---- 141 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---- 141 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC----
Confidence 3446666688888888888888766433321 12233333333665 6678889988899997766544333331
Q ss_pred CCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCC-CCCCeEEEEEecCCCEEEEEEc--CCeEEEEeC
Q 007306 451 LVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-MDLPITYATYSCDGKCIYVSCK--SGHVKVFDT 527 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~sg~~--dg~i~iwd~ 527 (608)
. ..+..-.+-.++..++.+.++.+...|..+|...-.+.... -...+...-.. ....++.+.. ++.+.-.|.
T Consensus 142 ~----~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 142 S----PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred C----eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEc
Confidence 0 01222223333433333456778777877777655543311 01111111112 2334555545 667888888
Q ss_pred CCCceeEEEeceeeccCCCc----ccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccCCC
Q 007306 528 STLELRCQINLTAYAQPGTI----SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~~----~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~ 592 (608)
.+|............ +.. ...+....+.. + .-+..++.++.+...+..+++..|....+
T Consensus 217 ~~G~~~w~~~~~~~~--~~~~~~~~~~~~~~~v~v---~-~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 217 EDGTLKWSQKVSQTI--GRTAISTTPAVDGGPVYV---D-GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cCCcEeeeeeeeccc--CcccccccccccCceEEE---C-CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 888877764322111 110 01111111211 1 23466677888999999999999988765
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.72 E-value=0.39 Score=50.74 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=73.2
Q ss_pred CeEEEEEcCCCeE-EEEeCCCcEEEEeCCCCceEEEee-CccccEEEEEEe--CCCCEEEEEcCCCcEEEEECCCC----
Q 007306 365 IATYFILLPQDLF-AFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGW---- 436 (608)
Q Consensus 365 ~v~~~~~~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~---- 436 (608)
..+-+.-+.-+.+ ++.+....+.|||.+.+.....-. ...+.|.++.|. |+|+.+++.+-.+.|.+|--...
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 3444445555533 334445589999999886443222 346789999985 58899988899999999854211
Q ss_pred ceecccceeee-eccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC
Q 007306 437 KKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 483 (608)
Q Consensus 437 ~~~~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~ 483 (608)
......+++.+ ...+++ .+|.+..|.++|. ++++.++.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~-LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTP--HPIGDSIWLKDGT-LVVGSGNQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCC--CCccceeEecCCe-EEEEeCCEEEEECC
Confidence 11111222222 234444 5788999999984 44556678888875
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.51 E-value=4.2 Score=44.49 Aligned_cols=71 Identities=17% Similarity=0.060 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCC----------CCce--E-EEe--------eCccccEEEEEEeCC---CCE
Q 007306 364 PIATYFILLPQD-LFAFGFDDSSILVHCPC----------TKKT--K-AKL--------KGHQNRITCLAYSLS---LNV 418 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~----------~~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~ 418 (608)
-.|..+.++|+| +++..|..|. .|..+. .|+. . +.+ ..+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 357888999999 7877776553 333332 1111 1 111 123457889999995 578
Q ss_pred EEEEcCCCcEEEEECCC
Q 007306 419 LVSSGADAQLCVWDAVG 435 (608)
Q Consensus 419 l~s~~~d~~i~vwd~~~ 435 (608)
|+.-..|+++++||+..
T Consensus 164 l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEEecCCEEEEEecCC
Confidence 99999999999999975
No 413
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.50 E-value=0.054 Score=48.32 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=64.7
Q ss_pred CCEEEEEe-CCcEEEEEcCCC-ceeeEecCCCCCeEEE-EEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcc-ccEE
Q 007306 334 GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYF-ILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRIT 408 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~-~~~~~~~~~~~~v~~~-~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~ 408 (608)
+..+++|+ +|.|.+|+.... .....+......|.++ .-..++ +..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 56777777 999999987632 1111112222333332 223344 78899999999999999888777666666 4455
Q ss_pred EEEEeCCCCEEEEE--cCCCcEEEEECCC
Q 007306 409 CLAYSLSLNVLVSS--GADAQLCVWDAVG 435 (608)
Q Consensus 409 ~~~~~~~~~~l~s~--~~d~~i~vwd~~~ 435 (608)
....+..++.++.+ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 55555555566665 6666666676654
No 414
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.49 E-value=3.3 Score=41.96 Aligned_cols=281 Identities=14% Similarity=0.088 Sum_probs=148.8
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-------CCEEEEEeCC
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSASGG 343 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-------~~~l~s~~d~ 343 (608)
...+++||..|.++||+...... ++. ..++.. .-..+|..+..- ...||.-.-.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~--------------~~~-~lllE~----~l~~PILqv~~G~F~s~~~~~~LaVLhP~ 97 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEF--------------QPE-DLLLET----QLKDPILQVECGKFVSGSEDLQLAVLHPR 97 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCC--------------CCc-cEEEEE----ecCCcEEEEEeccccCCCCcceEEEecCC
Confidence 35899999999999998754432 111 111111 133556555443 2345554467
Q ss_pred cEEEEEcCC--Cc-------eeeEecCCC--CCeEEEEEc----CCC--eEEEEeCCCcEEEEeCCCCceEEEeeCcccc
Q 007306 344 KISIFSLET--FQ-------TLATFANPP--PIATYFILL----PQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 344 ~i~vwd~~~--~~-------~~~~~~~~~--~~v~~~~~~----~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
.+.||.+.. |. .+..+..|. .....+++- ..+ +|.+-+.||.+.+|+-+.-.....+.. .--
T Consensus 98 kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~ll 176 (418)
T PF14727_consen 98 KLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLL 176 (418)
T ss_pred EEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCC
Confidence 777777621 11 112222222 222233332 232 888999999999999664433333332 222
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCce------------------ecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK------------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~------------------~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
...+.+.+....+++++.+..+.-|....-.. ....+-.++.-|... -.|..+.++....
T Consensus 177 PgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~--l~i~v~~~~~~~~ 254 (418)
T PF14727_consen 177 PGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA--LDIQVVRFSSSES 254 (418)
T ss_pred CcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee--EEEEEEEcCCCCc
Confidence 34567888888899999998888886532100 000111111112110 1233333444444
Q ss_pred EEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEe----cCC---CEEEEEEcCCeEEEEeCCCCceeEEEeceee
Q 007306 469 HLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS----CDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAY 541 (608)
Q Consensus 469 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 541 (608)
.+++-...++.+.+- +|......+.. ..+.....|. .++ ..++.++.++.+.||.=.+- +..-...
T Consensus 255 ~IvvLger~Lf~l~~-~G~l~~~krLd--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L--~WsA~l~-- 327 (418)
T PF14727_consen 255 DIVVLGERSLFCLKD-NGSLRFQKRLD--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL--VWSAQLP-- 327 (418)
T ss_pred eEEEEecceEEEEcC-CCeEEEEEecC--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE--EEecCCC--
Confidence 555545566777776 56554443321 2222222222 122 25888899999999875443 2322111
Q ss_pred ccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007306 542 AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 587 (608)
Q Consensus 542 ~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~ 587 (608)
..++.+.-..|.. -..++++-+.+|.+.+-=+-|.....
T Consensus 328 ------~~PVal~v~~~~~-~~G~IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 328 ------HVPVALSVANFNG-LKGLIVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred ------CCCEEEEecccCC-CCceEEEEcCCCcEEEEEeCCCCccc
Confidence 2223332333333 35689999999999998777654443
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.49 E-value=2.3 Score=40.18 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=86.6
Q ss_pred CeEEEEEcCCC-eEEEEe---CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEE-CCCCcee
Q 007306 365 IATYFILLPQD-LFAFGF---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD-AVGWKKL 439 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd-~~~~~~~ 439 (608)
.+.+.++++++ .++... ....++++..... ....+.+ ..+....|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc-
Confidence 67889999999 555544 3335666554322 2222232 3677889999988777777677767764 222221
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEE-E---eCCcEEEEECC---CCcee-----eeecCCCCCCCeEEEEEe
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAP---TLNHT-----SQLVPDKMDLPITYATYS 507 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~---~d~~i~iwd~~---~~~~~-----~~~~~~~~~~~v~~~~~s 507 (608)
..+. +...... +.|.++.+||||..++. . .++.|.+--+. .+... ..+.. .....+..+.|.
T Consensus 101 --~~~~-v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~ 174 (253)
T PF10647_consen 101 --EPVE-VDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWS 174 (253)
T ss_pred --eeEE-ecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeec
Confidence 1111 1111110 26999999999999887 3 25677776543 23010 01111 125688999999
Q ss_pred cCCCEEEEEEcCC
Q 007306 508 CDGKCIYVSCKSG 520 (608)
Q Consensus 508 ~~~~~l~sg~~dg 520 (608)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9999887766543
No 416
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.49 E-value=0.73 Score=47.24 Aligned_cols=146 Identities=8% Similarity=-0.018 Sum_probs=88.6
Q ss_pred CCCeEEEEEe-CCEEEEEe----CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-----eEEEEeCCCcEEEEeCCC
Q 007306 324 KDSISCFALR-GSHLFSAS----GGKISIFSLETFQTLATFANPPPIATYFILLPQD-----LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 324 ~~~v~~v~~s-~~~l~s~~----d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-----~l~~~~~d~~i~vwd~~~ 393 (608)
-.+|..++|. |+.++-.. +|.+++=|- +.+. .-.-|..++|.|-+ .+++....+.|.||.+..
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3578899999 77654433 455554442 2222 23457788998853 566666788999998752
Q ss_pred -----CceEEEeeCc---cc--cEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE
Q 007306 394 -----KKTKAKLKGH---QN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 463 (608)
Q Consensus 394 -----~~~~~~~~~~---~~--~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 463 (608)
++.+..-..+ .- -...+.|+|....|++-.....=.+++++... ..++.-..+. +-|.|.+|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~----srVkaDi~~~----G~IhCACW 163 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS----SRVKADIKTS----GLIHCACW 163 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC----ceEEEeccCC----ceEEEEEe
Confidence 2222111111 11 12357899998888776665555566665532 1222111222 68999999
Q ss_pred cCCCCEEEEE--eCCcEEEEECC
Q 007306 464 HPDQIHLLSI--HEGQIDVYEAP 484 (608)
Q Consensus 464 sp~~~~l~~~--~d~~i~iwd~~ 484 (608)
.+||..|+++ +.=.-++||-.
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCc
Confidence 9999998884 44456889854
No 417
>PHA03098 kelch-like protein; Provisional
Probab=95.33 E-value=0.98 Score=48.27 Aligned_cols=182 Identities=11% Similarity=-0.009 Sum_probs=85.2
Q ss_pred cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCC-----CcEEEEECCCCceecccceeeeeccCCCCccceE
Q 007306 385 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 459 (608)
Q Consensus 385 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 459 (608)
.+..||+.+++....-.............-+++.++.|+.+ ..+..||..+.+-....++ +.... ..
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l---p~~r~----~~- 383 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPL---IFPRY----NP- 383 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc---CcCCc----cc-
Confidence 46777877665432111010111111122367777888765 3477788776432211111 11111 11
Q ss_pred EEEEcCCCCEEEE-Ee--C----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------CeEEE
Q 007306 460 HIQFHPDQIHLLS-IH--E----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------GHVKV 524 (608)
Q Consensus 460 ~v~~sp~~~~l~~-~~--d----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d--------g~i~i 524 (608)
+++. -+++..+. |. + +.+..||..+.+-...-..+. ... ...+...++...+.|+.+ ..+.+
T Consensus 384 ~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 384 CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-ccc-CceEEEECCEEEEECCccCCCCCcccceEEE
Confidence 1222 24555555 42 1 358899987655322111110 111 112233456666666643 23888
Q ss_pred EeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCccccccC
Q 007306 525 FDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 525 wd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-----g~v~iW~~~~~~~~~~~~ 590 (608)
||..+++-...-... .+ ......+.+ ++.+++.||.+ ..|.++|+.+. .|...
T Consensus 461 yd~~~~~W~~~~~~~--~~------r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~ 518 (534)
T PHA03098 461 YNPVTNKWTELSSLN--FP------RINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN--TWTLF 518 (534)
T ss_pred ecCCCCceeeCCCCC--cc------cccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCC--EEEec
Confidence 998887643321110 00 011112222 46677777754 46888888765 46543
No 418
>PHA03098 kelch-like protein; Provisional
Probab=95.30 E-value=1.4 Score=47.18 Aligned_cols=186 Identities=10% Similarity=-0.009 Sum_probs=88.2
Q ss_pred CCEEEEEe-CC------cEEEEEcCCCceeeEecC--CCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEE
Q 007306 334 GSHLFSAS-GG------KISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKA 398 (608)
Q Consensus 334 ~~~l~s~~-d~------~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~d-----~~i~vwd~~~~~~~~ 398 (608)
+..++.|+ ++ .+..||..+++....-.. .......+ .-++ .++.||.+ ..+..||+.+++...
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 55556665 32 567888877654322111 11112222 2356 66777765 357788988765432
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCC------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.-..........+..-+++..+.|+.+ ..+..||..+.+-. .+...+.... .. +++. .+++..+.
T Consensus 373 ~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~---~~~~~p~~r~----~~-~~~~-~~~~iyv~ 443 (534)
T PHA03098 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS---KGSPLPISHY----GG-CAIY-HDGKIYVI 443 (534)
T ss_pred CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee---ecCCCCcccc----Cc-eEEE-ECCEEEEE
Confidence 111011111111122356777777732 45788998764321 1111111111 11 2222 23444444
Q ss_pred E-eC--------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCce
Q 007306 473 I-HE--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLEL 532 (608)
Q Consensus 473 ~-~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~ 532 (608)
| .+ ..+.+||..+.+-...-...........+ .-+++.++.|+.+ +.|.+||..+.+-
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC--IFNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE--EECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 3 22 13888998776543221111001111112 2367777777654 4688888877653
No 419
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.15 E-value=6.4 Score=43.25 Aligned_cols=312 Identities=13% Similarity=0.063 Sum_probs=171.1
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCcee---eEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECR---TLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~---~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.+-.|+.+|.++..||.+.-+-++.. ++... ...| -..++.--.|+..++.-+-+..|.-..+|.....-
T Consensus 590 ~~e~d~~yLlvalgdG~l~~fv~d~~--tg~lsd~Kk~~l----Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kL- 662 (1096)
T KOG1897|consen 590 TFEGDIHYLLVALGDGALLYFVLDIN--TGQLSDRKKVTL----GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKL- 662 (1096)
T ss_pred EeeccceEEEEEcCCceEEEEEEEcc--cceEcccccccc----CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcE-
Confidence 45666889999999999887766532 11111 1111 35567777787655544444455544444322111
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEE-EEEe----CCEEEEEeCCcEEEEEcCCCce--eeEecCCCCCe
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC-FALR----GSHLFSASGGKISIFSLETFQT--LATFANPPPIA 366 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~s----~~~l~s~~d~~i~vwd~~~~~~--~~~~~~~~~~v 366 (608)
++.+-+- ..+.. +.|+ ...++++..+.+++.-++.-+. ++++ .-....
T Consensus 663 ------------v~spls~------------kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtv-pl~~~p 717 (1096)
T KOG1897|consen 663 ------------VYSPLSL------------KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTV-PLGESP 717 (1096)
T ss_pred ------------EEeccch------------HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeee-cCCCCh
Confidence 1111110 11111 1233 4567777777777776654322 2222 223344
Q ss_pred EEEEEcCCC-eEEEEeC-----------C---CcEEEEeCCCCceEEEeeC--c--cccEEEEEEeCC-CCEEEEEcC--
Q 007306 367 TYFILLPQD-LFAFGFD-----------D---SSILVHCPCTKKTKAKLKG--H--QNRITCLAYSLS-LNVLVSSGA-- 424 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~-----------d---~~i~vwd~~~~~~~~~~~~--~--~~~v~~~~~~~~-~~~l~s~~~-- 424 (608)
..+++.+.. .+.+.+. . ..++++|-.+-+.+...+- . ...+.++.|..| +.++++|..
T Consensus 718 rrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v 797 (1096)
T KOG1897|consen 718 RRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLV 797 (1096)
T ss_pred hheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEee
Confidence 556666644 3333321 1 1467777776655543321 1 123555668776 677777753
Q ss_pred --------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCC
Q 007306 425 --------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK 496 (608)
Q Consensus 425 --------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~ 496 (608)
.|.|.+|.+.... .++...+.... +.+.++..- +|+ +++|-+..|++|+..+.+.++.-. .
T Consensus 798 ~Pde~ep~~GRIivfe~~e~~-----~L~~v~e~~v~--Gav~aL~~f-ngk-llA~In~~vrLye~t~~~eLr~e~--~ 866 (1096)
T KOG1897|consen 798 YPDENEPVNGRIIVFEFEELN-----SLELVAETVVK--GAVYALVEF-NGK-LLAGINQSVRLYEWTTERELRIEC--N 866 (1096)
T ss_pred ccCCCCcccceEEEEEEecCC-----ceeeeeeeeec--cceeehhhh-CCe-EEEecCcEEEEEEccccceehhhh--c
Confidence 4778888776521 11101110000 445554432 344 455566789999998876555433 2
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC--CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCc
Q 007306 497 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 497 ~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 574 (608)
+..++..+...-.|..++.|.--+.+.+-... .|.....-. .-.+-|.+++.+-. ...++.+..+|.
T Consensus 867 ~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr---------D~~p~Wmtaveil~--~d~ylgae~~gN 935 (1096)
T KOG1897|consen 867 ISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR---------DYNPNWMTAVEILD--DDTYLGAENSGN 935 (1096)
T ss_pred ccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh---------hhCccceeeEEEec--CceEEeeccccc
Confidence 57889999999999999999887777665544 333333221 13345566777664 456666677888
Q ss_pred EEEEeCCC
Q 007306 575 VHVIEPLE 582 (608)
Q Consensus 575 v~iW~~~~ 582 (608)
+++-...+
T Consensus 936 lf~v~~d~ 943 (1096)
T KOG1897|consen 936 LFTVRKDS 943 (1096)
T ss_pred EEEEEecC
Confidence 88776553
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.09 E-value=3.7 Score=41.10 Aligned_cols=202 Identities=12% Similarity=0.056 Sum_probs=92.7
Q ss_pred eEEEEe-CCCcEEEEeCCCC----ceEEEeeC---cc----ccEEEEEEeCCCCEEEEEcC------CCcEEEEECCCCc
Q 007306 376 LFAFGF-DDSSILVHCPCTK----KTKAKLKG---HQ----NRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWK 437 (608)
Q Consensus 376 ~l~~~~-~d~~i~vwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~ 437 (608)
+|+..+ .++.|+|.|+.+. +..+.+.. +. .....+..-|+|+.++++-. -|.+.++|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 555555 7789999998743 34444432 11 23334556688988887532 2567788877643
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe---------------------CCcEEEEECCCCceeeeecCCC
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---------------------EGQIDVYEAPTLNHTSQLVPDK 496 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~---------------------d~~i~iwd~~~~~~~~~~~~~~ 496 (608)
....... ..+.. ..-..+-+.|....++++. ..++.+||+.+.+.++++..+.
T Consensus 169 v~g~We~---~~~~~---~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 169 VKGRWEK---DRGPQ---PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp EEEE--S---B-TT---------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred ccceecc---CCCCC---CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 2221111 01111 2345677888877777742 2359999999999999998754
Q ss_pred CCCCeEEEEEe--cCCCEEEEEE-cCCeEEEEeC-CCCceeEE--EeceeeccCCCccc---------ccccEEEEEecC
Q 007306 497 MDLPITYATYS--CDGKCIYVSC-KSGHVKVFDT-STLELRCQ--INLTAYAQPGTISL---------ELYPLVIAAHPL 561 (608)
Q Consensus 497 ~~~~v~~~~~s--~~~~~l~sg~-~dg~i~iwd~-~~~~~~~~--~~~~~~~~~g~~~~---------~v~~~~v~~sp~ 561 (608)
.......+.|. |+..+=++|+ -.++|..|-- ..++-... +........|-.-. +--++.+..|.+
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 33446667775 4555544433 2344554443 44432211 11110000010000 112568999994
Q ss_pred CCCEEEE-EeCCCcEEEEeCCCCc
Q 007306 562 EPNRIAL-GLTNGRVHVIEPLESE 584 (608)
Q Consensus 562 d~~~las-~s~Dg~v~iW~~~~~~ 584 (608)
.++|.. +=.+|.||.||+++..
T Consensus 323 -DrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 323 -DRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -S-EEEEEETTTTEEEEEE-SSTT
T ss_pred -CCEEEEEcccCCcEEEEecCCCC
Confidence 555554 4478999999998854
No 421
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.88 E-value=0.98 Score=45.50 Aligned_cols=150 Identities=9% Similarity=0.063 Sum_probs=79.0
Q ss_pred ccEEEEEEeCCCCEEEEEc-----------CCC-cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 405 NRITCLAYSLSLNVLVSSG-----------ADA-QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~-----------~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.....++|.++|+++++-. ..+ .|.+++-..+..... ....+..+. .....+++.++| .+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l----~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEEL----SMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCC----CCccceeEecCC-EEEe
Confidence 3467789999998877643 223 677775443221111 111122222 345789999998 4444
Q ss_pred EeCCcEEEE-ECCCC-----c--ee-eeecCCC--CCCCeEEEEEecCCCEEEEEEcC-------------------CeE
Q 007306 473 IHEGQIDVY-EAPTL-----N--HT-SQLVPDK--MDLPITYATYSCDGKCIYVSCKS-------------------GHV 522 (608)
Q Consensus 473 ~~d~~i~iw-d~~~~-----~--~~-~~~~~~~--~~~~v~~~~~s~~~~~l~sg~~d-------------------g~i 522 (608)
. ...|..| |.... + .+ ..+.... +......++|.|||.+.++-+.. |.|
T Consensus 88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence 3 3445544 44211 1 11 1222210 13447789999999876654421 345
Q ss_pred EEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCC
Q 007306 523 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 573 (608)
Q Consensus 523 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 573 (608)
.-++..+++.. .+. .|+ -+...++|+| +++++++-..++
T Consensus 167 ~r~~pdg~~~e-~~a------~G~----rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 167 FRYNPDGGKLR-VVA------HGF----QNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEecCCCeEE-EEe------cCc----CCCccceECC-CCCEEEEccCCC
Confidence 55555554422 221 132 2234899999 788887755443
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.80 E-value=5.2 Score=40.48 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=33.4
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 498 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 498 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
...+.+++.+|++++.++...=|.|.++|+.++..+..+.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 4568889999999988887666999999999988776665
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.75 E-value=2.9 Score=43.13 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=87.8
Q ss_pred CCeEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC----CCEEEEEcCCCcEEEEECCCC
Q 007306 364 PIATYFILLPQD-LFAFGF--DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LNVLVSSGADAQLCVWDAVGW 436 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~d~~i~vwd~~~~ 436 (608)
.++..++|.... .+++.- .+|.+++=| .+.+..|. .|..+.|.|- ...+.+....+.|.||.+-..
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 356778885444 444432 344444332 23344443 5889999984 324555667889999988632
Q ss_pred ceecccceee-eeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC--ceeeeecCCCCCCCeEEEEEecCCCE
Q 007306 437 KKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL--NHTSQLVPDKMDLPITYATYSCDGKC 512 (608)
Q Consensus 437 ~~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~ 512 (608)
.....+.+.+ .-+-..+..---..+.|+|....|++ .....-.+++++.. +....+. ..+.|.+.+|.+||+.
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQR 169 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcCCE
Confidence 1111222210 00000000011235789999988887 43333345565432 3333343 3788999999999998
Q ss_pred EEEEEc-CCeEEEEeCCCC
Q 007306 513 IYVSCK-SGHVKVFDTSTL 530 (608)
Q Consensus 513 l~sg~~-dg~i~iwd~~~~ 530 (608)
|+.+-. .=.-+|||-...
T Consensus 170 LVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEEeCCeEEEEEecCchh
Confidence 776543 345688986544
No 424
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.69 E-value=4 Score=38.66 Aligned_cols=205 Identities=13% Similarity=0.116 Sum_probs=116.0
Q ss_pred CeEEEEEe-CCEEEEEe--CCcEEEEEcC------CCc-eeeEecC-----CCCCeEEEEEcCCC-------------eE
Q 007306 326 SISCFALR-GSHLFSAS--GGKISIFSLE------TFQ-TLATFAN-----PPPIATYFILLPQD-------------LF 377 (608)
Q Consensus 326 ~v~~v~~s-~~~l~s~~--d~~i~vwd~~------~~~-~~~~~~~-----~~~~v~~~~~~~~~-------------~l 377 (608)
.-+.|+++ +..+..+. .+...+||.. ..+ .+-++.. .....+.+.|+... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34678888 44444444 6889999986 122 2223331 12345666665322 46
Q ss_pred EEEeCCCcEEEEeCCCCce-----EEEee-CccccE-EEEEEeC--CCCEEEEE-cCCCcEEEEECCCCceec--cccee
Q 007306 378 AFGFDDSSILVHCPCTKKT-----KAKLK-GHQNRI-TCLAYSL--SLNVLVSS-GADAQLCVWDAVGWKKLC--SKFLH 445 (608)
Q Consensus 378 ~~~~~d~~i~vwd~~~~~~-----~~~~~-~~~~~v-~~~~~~~--~~~~l~s~-~~d~~i~vwd~~~~~~~~--~~~~~ 445 (608)
+.+++||+|.-|...-+.. ...+. .....| ..+++.. .+.+|..+ -..++|.|||-.-..... ...-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998543322 11221 112233 2344443 34554444 457899999865421100 00000
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEE-E-------------eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec---
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLS-I-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC--- 508 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--- 508 (608)
.++.+..| -.|..+ .++..++ . .-|.|-+||. .|+.++++...+.-..-+.++..|
T Consensus 184 ~iPagyAP--FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 184 ALPAGYAP--FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCC--cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhh
Confidence 01222211 111111 1223332 2 2357999999 799999887655566677777754
Q ss_pred ---CCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 509 ---DGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 509 ---~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.|.+|+-.-.||+|..||..+++.+..+.
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 56778877789999999999998777765
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=5.2 Score=42.54 Aligned_cols=171 Identities=10% Similarity=0.093 Sum_probs=87.6
Q ss_pred CeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEe----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE
Q 007306 326 SISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 326 ~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
.+-.+.|+ ...|++.. +|++.+|++. |+.+... ......|..+.+..+| .+.+. +|.+.+-+-.....+.
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhh
Confidence 77789999 77777777 9999999986 3333331 2223445555555677 44443 3444443322111222
Q ss_pred EeeC---ccccEEEEEEeCCCC---EEEEEc-CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE
Q 007306 399 KLKG---HQNRITCLAYSLSLN---VLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 399 ~~~~---~~~~v~~~~~~~~~~---~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 471 (608)
.+.. ....-+|-...+++. .++-.. ..+ ..++...... ..... +...+ +.+..+..||++++|+
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~-~~~~~----~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHA-LSWPN----SSVVKISVSPNRRFLA 232 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccc-cCCCC----ceEEEEEEcCCcceEE
Confidence 2221 111112222222221 111111 000 0111111110 11111 22222 4678899999999999
Q ss_pred E-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 007306 472 S-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 509 (608)
Q Consensus 472 ~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 509 (608)
. ..+|.|.+-+.+..+..-.+....|. +.-.++|.-+
T Consensus 233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgn 270 (829)
T KOG2280|consen 233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGN 270 (829)
T ss_pred EEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecC
Confidence 8 78999999998877777677654332 2225555433
No 426
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.56 E-value=5.3 Score=40.41 Aligned_cols=153 Identities=8% Similarity=-0.022 Sum_probs=83.7
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccccee
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
..+..++++ .++++.....++-||--...-...-......+.++.+.+++..++++ .+|.+.. ....++.-....+.
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccccee
Confidence 345566777 65555544333334432111111112234568899999999877765 5566543 33332110000112
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKV 524 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i 524 (608)
........ ..+.++.|.+++..+++|..|.+.... ..|+.-.... ...-...++.+.|.++++.+++| .+|.|.-
T Consensus 320 ~~~~~~~~--~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 320 EADIKSRG--FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred ecccCCCC--cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 11111110 358899999999998889888776664 3444322222 11124678899998877766666 6777654
Q ss_pred E
Q 007306 525 F 525 (608)
Q Consensus 525 w 525 (608)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.53 E-value=1.1 Score=48.87 Aligned_cols=89 Identities=10% Similarity=0.177 Sum_probs=56.1
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC----------Cce--eEE-EeceeeccCCCcccccccEEEEEecC--C
Q 007306 498 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LEL--RCQ-INLTAYAQPGTISLELYPLVIAAHPL--E 562 (608)
Q Consensus 498 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~----------~~~--~~~-~~~~~~~~~g~~~~~v~~~~v~~sp~--d 562 (608)
.-.|..+.++|+|++|+..|..|.+ |-.+.. |+. .+. +......... .....+..+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--NSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccC--CCCceEEEEEEcCCCCC
Confidence 4568899999999999998886643 333321 111 111 1111111111 22344669999994 2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcccccc
Q 007306 563 PNRIALGLTNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~~~~~~~~~ 589 (608)
+..|+.-+.|+++|+||+...+..|..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEE
Confidence 579999999999999999876554433
No 428
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.50 E-value=4.9 Score=38.83 Aligned_cols=159 Identities=9% Similarity=0.019 Sum_probs=82.8
Q ss_pred cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCce
Q 007306 360 ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 360 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
....+.+..+.-++|| +++++.......-||.-...-...-+.-..+|.++.|.|++...+.+ ..|.|++=+......
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445678888889999 77777666566678765432333333356789999999998776644 788888877221110
Q ss_pred ecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEE
Q 007306 439 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
.-.+.+....... ..+.++++.+++...+++..|.+ +...+.|+.=+..... .-...++.+.|.++.+-++.|
T Consensus 220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG- 293 (302)
T PF14870_consen 220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG- 293 (302)
T ss_dssp EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-
Confidence 0011111010110 34789999999888888877755 4455555543333221 125678899998776666665
Q ss_pred cCCeEEEE
Q 007306 518 KSGHVKVF 525 (608)
Q Consensus 518 ~dg~i~iw 525 (608)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 67877554
No 429
>PHA02790 Kelch-like protein; Provisional
Probab=94.30 E-value=3.3 Score=43.42 Aligned_cols=183 Identities=9% Similarity=-0.090 Sum_probs=84.0
Q ss_pred CCEEEEEe-C-----CcEEEEEcCCCceeeE--ecCCCCCeEEEEEcCCC-eEEEEeCC--CcEEEEeCCCCceEEEeeC
Q 007306 334 GSHLFSAS-G-----GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKG 402 (608)
Q Consensus 334 ~~~l~s~~-d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d--~~i~vwd~~~~~~~~~~~~ 402 (608)
+..++.|+ + ..+..||..+++.... +....... ++ ..-++ ..++|+.+ .++..||..+++....-.-
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 44455555 3 2466788776543322 21111111 22 23466 66777754 3688898876643321111
Q ss_pred ccccEEEEEEeCCCCEEEEEcCCC---cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEE
Q 007306 403 HQNRITCLAYSLSLNVLVSSGADA---QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQID 479 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~ 479 (608)
...........-+|+..+.|+.++ .+..||..+.+-....++. ... ... +++ .-+|+..+.| |.+.
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~---~~r----~~~-~~~-~~~~~IYv~G--G~~e 418 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY---YPH----YKS-CAL-VFGRRLFLVG--RNAE 418 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC---Ccc----ccc-eEE-EECCEEEEEC--CceE
Confidence 111111112233677778877653 4678888764322111111 111 111 121 2334444445 3567
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCc
Q 007306 480 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLE 531 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~ 531 (608)
+||..+.+-...-... +...-.+++ --+|+..+.|+.+ ..|..||..+++
T Consensus 419 ~ydp~~~~W~~~~~m~-~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 419 FYCESSNTWTLIDDPI-YPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EecCCCCcEeEcCCCC-CCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 8888766543211111 111111222 2466777777654 245556655543
No 430
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.75 Score=50.72 Aligned_cols=124 Identities=15% Similarity=0.068 Sum_probs=81.2
Q ss_pred CCcEEEEEcCCCcee-----eEec------CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce-EEEeeCccccE
Q 007306 342 GGKISIFSLETFQTL-----ATFA------NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT-KAKLKGHQNRI 407 (608)
Q Consensus 342 d~~i~vwd~~~~~~~-----~~~~------~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v 407 (608)
+..|..||+++...- ..+. .......++.|+|.= ..+++..|+.|++..+..... +..+. .....
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~ 201 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQ 201 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccce
Confidence 347888998753221 1111 122345688899887 778888999999887653322 22222 45678
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 408 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
++++|+|.|+.++.|...|++.-|-..-.......+.. ..+ . ..|.+|+|-....++++
T Consensus 202 Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp-~~e--~---yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 202 TAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP-VEE--N---YRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeEEeccccceeeEecCCCeEEEeecccceeecccCCC-cCC--C---cceeEEEEecceeEEEE
Confidence 99999999999999999999998876542111111111 111 1 67999999988888876
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.81 E-value=0.037 Score=58.67 Aligned_cols=197 Identities=10% Similarity=0.111 Sum_probs=110.9
Q ss_pred CCCCCeEEEEEe-CC--EEEEEe-CCcEEEEEcC--CCceeeE-----ecCCCCCeEEEEEcC---CC-eEEEEeCCCcE
Q 007306 322 DPKDSISCFALR-GS--HLFSAS-GGKISIFSLE--TFQTLAT-----FANPPPIATYFILLP---QD-LFAFGFDDSSI 386 (608)
Q Consensus 322 ~~~~~v~~v~~s-~~--~l~s~~-d~~i~vwd~~--~~~~~~~-----~~~~~~~v~~~~~~~---~~-~l~~~~~d~~i 386 (608)
+..+.|-.+.|. .+ .+. - -|.+.|||+. .|+.... .......+.-+.|.| +. ++..+-.+++|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 577778888776 21 222 3 3778899875 3443222 223334445555654 44 67777788888
Q ss_pred EEEeCCCCceEEEeeCccccEEEEE-----------EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCc
Q 007306 387 LVHCPCTKKTKAKLKGHQNRITCLA-----------YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPET 455 (608)
Q Consensus 387 ~vwd~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 455 (608)
++........ ..+++|...+..++ .+|||+.++.++.||.+++|.+.-.......++. ..+.|..+
T Consensus 208 ~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclh-ewkphd~~- 284 (1283)
T KOG1916|consen 208 RLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLH-EWKPHDKH- 284 (1283)
T ss_pred eEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhh-ccCCCCCC-
Confidence 8877654322 44556766655543 5899999999999999999987542222233444 23333310
Q ss_pred cceEEEEEcCC-------C--CEEEEE--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCE------------
Q 007306 456 TIVNHIQFHPD-------Q--IHLLSI--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKC------------ 512 (608)
Q Consensus 456 ~~v~~v~~sp~-------~--~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~------------ 512 (608)
..+..+ ++.+ + .+++++ .+..+++|.....+|.-.+. ...|..+. -++|..
T Consensus 285 p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~ 358 (1283)
T KOG1916|consen 285 PRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTR 358 (1283)
T ss_pred Cceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHH
Confidence 123333 4432 2 233343 34679999987777763332 22333333 333321
Q ss_pred EEEEEcCCeEEEEeCCC
Q 007306 513 IYVSCKSGHVKVFDTST 529 (608)
Q Consensus 513 l~sg~~dg~i~iwd~~~ 529 (608)
+++-+-++.|.+|.-..
T Consensus 359 ~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 359 LVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHHhhhHHHHHHhhcch
Confidence 23455678888886443
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.65 E-value=3.5 Score=41.56 Aligned_cols=148 Identities=15% Similarity=0.066 Sum_probs=78.0
Q ss_pred CeEEEEEcCCC-eEEEEe-----------CCC-cEEEEeCCC--Cc--eEEEeeCccccEEEEEEeCCCCEEEEEcCCCc
Q 007306 365 IATYFILLPQD-LFAFGF-----------DDS-SILVHCPCT--KK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~-----------~d~-~i~vwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 427 (608)
....++|.++| ++++-. ..+ .|.+++-.+ |+ ....+...-.....+++.++| .++ ++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeE
Confidence 44578999999 544432 223 677776543 32 223444334456889999988 444 444433
Q ss_pred EEEEECCCCcee--cccceee-eeccCCCCccceEEEEEcCCCCEEEE-EeC-------------------CcEEEEECC
Q 007306 428 LCVWDAVGWKKL--CSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------------GQIDVYEAP 484 (608)
Q Consensus 428 i~vwd~~~~~~~--~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d-------------------~~i~iwd~~ 484 (608)
.++.|....... ....+.+ +.............++|.|||.+.++ +.. +.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 333354332111 1111111 11110000034778999999987776 421 335555554
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 485 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
+++ +..+.. + ......++|+++|+++++-.
T Consensus 173 g~~-~e~~a~-G-~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGK-LRVVAH-G-FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCe-EEEEec-C-cCCCccceECCCCCEEEEcc
Confidence 433 233322 2 34567899999999877644
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.53 E-value=8.5 Score=38.09 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=40.7
Q ss_pred CCCeEEEEEec-------CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 498 DLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 498 ~~~v~~~~~s~-------~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
...+..+.|-. .|.++++.-..+.|...++..+..+.... .+. + .....+..+++.| ||.+.++-.
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~--~--~~~~r~~~v~~~p-DG~Lyv~~d 324 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL--G--GFGGRPRDVAQGP-DGALYVSDD 324 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC--T--TSSS-EEEEEEET-TSEEEEEE-
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc--c--cCCCCceEEEEcC-CCeEEEEEC
Confidence 35566666653 44566666556788888876553322211 111 1 1112355999999 788888888
Q ss_pred CCCcEE
Q 007306 571 TNGRVH 576 (608)
Q Consensus 571 ~Dg~v~ 576 (608)
.+|.|.
T Consensus 325 ~~G~iy 330 (331)
T PF07995_consen 325 SDGKIY 330 (331)
T ss_dssp TTTTEE
T ss_pred CCCeEe
Confidence 888764
No 434
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.53 E-value=11 Score=39.58 Aligned_cols=146 Identities=18% Similarity=0.039 Sum_probs=70.7
Q ss_pred CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee-eccCCCCccceEE
Q 007306 382 DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNH 460 (608)
Q Consensus 382 ~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~ 460 (608)
..+...++|.. |.....+.........+...++|.+++... ..+..+|... +......+..- ..-|. .
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HH-------D 194 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHH-------D 194 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S--------
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCccccccc-------c
Confidence 34456666643 444444432221111166778898877555 7788888764 22111111100 01122 5
Q ss_pred EEEcCCCCEEEEEe--------------CCcEEEEECCCCceeeeecCCCC-------------------------CCCe
Q 007306 461 IQFHPDQIHLLSIH--------------EGQIDVYEAPTLNHTSQLVPDKM-------------------------DLPI 501 (608)
Q Consensus 461 v~~sp~~~~l~~~~--------------d~~i~iwd~~~~~~~~~~~~~~~-------------------------~~~v 501 (608)
+..-|+|.+|+.+. ...|..+| .+|+.+..+....| =-.+
T Consensus 195 ~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~ 273 (477)
T PF05935_consen 195 IDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHI 273 (477)
T ss_dssp EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--E
T ss_pred cEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcccc
Confidence 67789998888643 23456666 66665554332221 1247
Q ss_pred EEEEEec-CCCEEEEEEcCCeEEEEeCCCCceeEEEece
Q 007306 502 TYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLT 539 (608)
Q Consensus 502 ~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 539 (608)
.++.+.+ ++.+|+++-.-..|...|..++++...+..+
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 8899998 5555555544568999999999988887643
No 435
>PHA02790 Kelch-like protein; Provisional
Probab=93.39 E-value=7.8 Score=40.68 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=48.6
Q ss_pred CCEEEEEe-CC---cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE--EeeCcccc
Q 007306 334 GSHLFSAS-GG---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNR 406 (608)
Q Consensus 334 ~~~l~s~~-d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~ 406 (608)
|+..+.|+ ++ .+..||..+.+-...-......-...+..-++ ..+.|+ .+.+||+.+++... .+......
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccc
Confidence 66666666 53 46788887654332111111111112223456 555553 57789988765432 12111111
Q ss_pred EEEEEEeCCCCEEEEEcCC-----CcEEEEECCC
Q 007306 407 ITCLAYSLSLNVLVSSGAD-----AQLCVWDAVG 435 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~ 435 (608)
. +++ .-+|+..+.|+.+ ..+..||..+
T Consensus 440 ~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 440 P-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred c-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 2 222 2367778888754 3466777665
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=5.5 Score=42.40 Aligned_cols=147 Identities=10% Similarity=0.131 Sum_probs=82.7
Q ss_pred CCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEE
Q 007306 383 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 462 (608)
Q Consensus 383 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 462 (608)
--.|+||+.. |..+....-....+-.+.|+.+. .|++...+|++++|++........ .+. .+... ..|..+.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~-svg--~e~~~---~~I~ec~ 134 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN-SVG--FESQM---SDIVECR 134 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc-ccc--ccccc---CceeEEE
Confidence 3468888865 55555444334478889999765 466678899999999876322111 110 01111 2344444
Q ss_pred EcCCCCEEEEEeCCcE--------EEEECCC---------------C----ceeeee----------------c---CCC
Q 007306 463 FHPDQIHLLSIHEGQI--------DVYEAPT---------------L----NHTSQL----------------V---PDK 496 (608)
Q Consensus 463 ~sp~~~~l~~~~d~~i--------~iwd~~~---------------~----~~~~~~----------------~---~~~ 496 (608)
+..+|-.+++..+..+ .+|.+.. . ..+..+ . ...
T Consensus 135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 4444433333221111 1222111 0 000000 0 000
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 497 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 497 ~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
....+..+..||+.++|+--..+|.|.+-+.+..+....+.
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 13567889999999999999999999999988877776665
No 437
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=5.7 Score=35.34 Aligned_cols=180 Identities=13% Similarity=0.071 Sum_probs=95.9
Q ss_pred EEEEe-CCEEEEEe---CCcEEEEEcCCCceeeEecCCCCCeEE--EEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeC
Q 007306 329 CFALR-GSHLFSAS---GGKISIFSLETFQTLATFANPPPIATY--FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG 402 (608)
Q Consensus 329 ~v~~s-~~~l~s~~---d~~i~vwd~~~~~~~~~~~~~~~~v~~--~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~ 402 (608)
.+.+. |.++.+.+ ...|++||+.+|+.+.+-.-....+.. +.-..|....-.-.+|.-..+|.++-+.+..+.
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 34445 65666666 357999999999987765533222211 111122223334568888999998887776654
Q ss_pred ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEE
Q 007306 403 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVY 481 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iw 481 (608)
..+.=..+ ..|+..|+.++...+++.-|..+.... ..++....+..- ..++.+.|- +|...+-- .+..|...
T Consensus 129 y~GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~--~~v~VT~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI 201 (262)
T COG3823 129 YEGEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAEL--DTVQVTDDGVPV--SKLNELEWV-DGELYANVWQTTRIARI 201 (262)
T ss_pred cCCcceee--ecCCcceEeeCCceEEEecCHHHhhhc--ceEEEEECCeec--ccccceeee-ccEEEEeeeeecceEEE
Confidence 22333333 345666777766667777776653221 122211222110 122333333 23333322 45556666
Q ss_pred ECCCCceeeeecCC----------CCCCCeEEEEEecCC-CEEEEE
Q 007306 482 EAPTLNHTSQLVPD----------KMDLPITYATYSCDG-KCIYVS 516 (608)
Q Consensus 482 d~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~-~~l~sg 516 (608)
|..+|+.+..+... .+......+++.|++ +++++|
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 66677665544321 134466778888877 455555
No 438
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.08 E-value=9.9 Score=37.54 Aligned_cols=173 Identities=13% Similarity=0.061 Sum_probs=92.2
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCc------EEEEECCCCce----e---cccceeeeeccCCC--CccceEEEEEcCCCCE
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQ------LCVWDAVGWKK----L---CSKFLHSFQTGLVP--ETTIVNHIQFHPDQIH 469 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~------i~vwd~~~~~~----~---~~~~~~~~~~~~~~--~~~~v~~v~~sp~~~~ 469 (608)
+.++.+.+.|++..+++.+.+|. +..+++..... . ....+. -..+..- .....-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcCCcCCCChhHeEEecCCCE
Confidence 55788889876666667777777 66555543110 0 000111 0001000 0013347888888888
Q ss_pred EEEE-eC------CcEEEEECCCCceeeeecCC-------------CCCCCeEEEEEecCCCEEEEEEc-----CC--e-
Q 007306 470 LLSI-HE------GQIDVYEAPTLNHTSQLVPD-------------KMDLPITYATYSCDGKCIYVSCK-----SG--H- 521 (608)
Q Consensus 470 l~~~-~d------~~i~iwd~~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~sg~~-----dg--~- 521 (608)
+++. .+ ..|+.++.. |+....+..+ ..+..+-+++++|||+.|+++.+ |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8885 55 678888875 6665554211 13567899999999997766543 22 1
Q ss_pred ------EEEE--eCCC-CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC-----CCcEEEEeCC
Q 007306 522 ------VKVF--DTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-----NGRVHVIEPL 581 (608)
Q Consensus 522 ------i~iw--d~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-----Dg~v~iW~~~ 581 (608)
++|+ |..+ ++....+......+... .....+..+.+-+ ++.+|+-=-. ...++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~-~~~~~isd~~al~-d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTA-PGDNGISDIAALP-DGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccc-cCCCCceeEEEEC-CCcEEEEEccCCCCccceEEEEEEE
Confidence 4554 4444 33333332211100000 0223355888888 6776665332 3455666554
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.03 E-value=8.9 Score=36.97 Aligned_cols=168 Identities=13% Similarity=0.085 Sum_probs=89.4
Q ss_pred cEEEEEcCCCceeeEecCC------CCCeEEEEEcCC------C-eEEEEeCCCcEEEEeCCCCceEEEeeCc-------
Q 007306 344 KISIFSLETFQTLATFANP------PPIATYFILLPQ------D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------- 403 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~------~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~------- 403 (608)
.|.+||+.+++.++++.-+ ...+..+.+... + ..++-...+.|.|+|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5678999999988887632 334566666541 3 3444445568999999998765544321
Q ss_pred ------------cccEEEEEEeC---CCCEEEEEcCCCcEEEEECCC-----Cceec----ccceeeeeccCCCCccceE
Q 007306 404 ------------QNRITCLAYSL---SLNVLVSSGADAQLCVWDAVG-----WKKLC----SKFLHSFQTGLVPETTIVN 459 (608)
Q Consensus 404 ------------~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~-----~~~~~----~~~~~~~~~~~~~~~~~v~ 459 (608)
...+..++.+| ++++|......+. ++|.+.+ ..... ...++.+ +..+ +...
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~--~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKG--SQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE-----SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec--cccC--CCCc
Confidence 12255555554 5555554443322 2333322 11000 0111211 1111 2455
Q ss_pred EEEEcCCCCEEEE-EeCCcEEEEECCCC---ceeeeecCCCC-CCCeEEEEEec--CCCEEEEE
Q 007306 460 HIQFHPDQIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKM-DLPITYATYSC--DGKCIYVS 516 (608)
Q Consensus 460 ~v~~sp~~~~l~~-~~d~~i~iwd~~~~---~~~~~~~~~~~-~~~v~~~~~s~--~~~~l~sg 516 (608)
.++++++|...++ -..+.|..|+..+. +....+..... -..+..+.+.+ +|.+.+..
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 7889999988888 48899999998751 12222222222 45778888888 66554444
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.93 E-value=2 Score=43.28 Aligned_cols=131 Identities=14% Similarity=0.208 Sum_probs=86.1
Q ss_pred CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--------eEEEEeCCCcEEEEeCCC-CceEEEeeC----ccccEE
Q 007306 342 GGKISIFSLETFQTLATFANPPPIATYFILLPQD--------LFAFGFDDSSILVHCPCT-KKTKAKLKG----HQNRIT 408 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--------~l~~~~~d~~i~vwd~~~-~~~~~~~~~----~~~~v~ 408 (608)
...+.-.|++.|+.+.....|..- -+.+.|+. .-++|-.+..|.-.|++- |..+..... .....+
T Consensus 489 ~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fs 566 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFS 566 (776)
T ss_pred cccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccccccc
Confidence 467788889999999988877654 45677753 235666777777777664 322222111 112233
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECC
Q 007306 409 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 484 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~ 484 (608)
|..-.. ..+++.++..|-|++||--. ....+...+-. ..|..+..+.+|+++++.....+.+-|++
T Consensus 567 s~~tTe-sGyIa~as~kGDirLyDRig------~rAKtalP~lG---~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 567 SGMTTE-SGYIAAASRKGDIRLYDRIG------KRAKTALPGLG---DAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred cccccc-CceEEEecCCCceeeehhhc------chhhhcCcccc---cceeeeEeecCCcEEEEeecceEEEEecc
Confidence 333333 34899999999999999654 11222233333 57899999999999999777788888864
No 441
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.92 E-value=0.59 Score=51.46 Aligned_cols=141 Identities=12% Similarity=0.071 Sum_probs=86.8
Q ss_pred eEEEEEcCCC---eEEEEeCCCcEEEEeCCCCce-----EEEeeC------ccccEEEEEEeCCCC-EEEEEcCCCcEEE
Q 007306 366 ATYFILLPQD---LFAFGFDDSSILVHCPCTKKT-----KAKLKG------HQNRITCLAYSLSLN-VLVSSGADAQLCV 430 (608)
Q Consensus 366 v~~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~-----~~~~~~------~~~~v~~~~~~~~~~-~l~s~~~d~~i~v 430 (608)
+..+...+|+ .++..+.+-.|..||+++-.. ...+.. ......++.|+|.-. ..+....|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 3445556666 333334444788899875321 111111 223456788988532 2555677899988
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC--CCCCeEEEEEe
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK--MDLPITYATYS 507 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~s 507 (608)
..+.-.. ..+.+..-+ ...++++|+|.|+.+++| ..|++.-|.. +++....+.... ....|.+++|-
T Consensus 183 ~~~~~~~----~~v~s~p~t-----~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 183 KSTKQLA----QNVTSFPVT-----NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhhhhh----hhhcccCcc-----cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence 8765422 112211111 468999999999999998 6788888876 455444443322 15789999999
Q ss_pred cCCCEEEEE
Q 007306 508 CDGKCIYVS 516 (608)
Q Consensus 508 ~~~~~l~sg 516 (608)
....++++-
T Consensus 253 ~t~eflvvy 261 (1405)
T KOG3630|consen 253 STQEFLVVY 261 (1405)
T ss_pred cceeEEEEe
Confidence 888777753
No 442
>PRK10115 protease 2; Provisional
Probab=92.90 E-value=18 Score=39.95 Aligned_cols=239 Identities=13% Similarity=0.042 Sum_probs=115.3
Q ss_pred CCeEEEEEe--CCEEEEEe--CC----cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC-C-----CcEEEE
Q 007306 325 DSISCFALR--GSHLFSAS--GG----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D-----SSILVH 389 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d-----~~i~vw 389 (608)
-.+..+.++ +++|+.+. +| .|++.|+.+|..+...-.... ..++|.+|+ .|+.... + ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 345566777 67776665 23 588999988864322211111 468999998 4444332 2 368888
Q ss_pred eCCCC--ceEEEeeCccccEE-EEEEeCCCCEEEEEcC---CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE
Q 007306 390 CPCTK--KTKAKLKGHQNRIT-CLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 463 (608)
Q Consensus 390 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 463 (608)
++.++ +....+........ .+..+.++++++..+. ++.+.+++....... ...+. .... .....+.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~----~~~~~~~- 276 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFL--PRRK----DHEYSLD- 276 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEE--ECCC----CCEEEEE-
Confidence 99887 44444543333333 2333447887665443 457888885432110 01111 1111 1222222
Q ss_pred cCCCCEEEEEe-C-C--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE--eCCCCceeEEEe
Q 007306 464 HPDQIHLLSIH-E-G--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF--DTSTLELRCQIN 537 (608)
Q Consensus 464 sp~~~~l~~~~-d-~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iw--d~~~~~~~~~~~ 537 (608)
+..+.+.+... + . .|...++.+......+..+.....+..+.+. .+.++++...+|.-+++ +..++. ...+.
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~ 354 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE-VIGIA 354 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc-eEEec
Confidence 33333333332 1 2 3444455421112233332123467778877 33455566667665554 443333 33322
Q ss_pred ceeeccCCCcccccccEEEEEe--cCCCCEEEEEe---CCCcEEEEeCCCCc
Q 007306 538 LTAYAQPGTISLELYPLVIAAH--PLEPNRIALGL---TNGRVHVIEPLESE 584 (608)
Q Consensus 538 ~~~~~~~g~~~~~v~~~~v~~s--p~d~~~las~s---~Dg~v~iW~~~~~~ 584 (608)
.. + . ..+..+.++ ++++.++++.+ .-+.+..+|+.+++
T Consensus 355 ~~-----~--~--~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 355 FD-----D--P--AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CC-----C--C--ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 10 0 0 111123333 32234554444 33678888887765
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.88 E-value=4.6 Score=33.22 Aligned_cols=109 Identities=16% Similarity=0.090 Sum_probs=68.0
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCc--------eEEEeeCccccEEEEEEeC-----CCCEEEEEcCCCcEEEEECCC
Q 007306 370 ILLPQD-LFAFGFDDSSILVHCPCTKK--------TKAKLKGHQNRITCLAYSL-----SLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 370 ~~~~~~-~l~~~~~d~~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~vwd~~~ 435 (608)
.|.... .|+.++..|.|.|+++.... .+..+. -...|++++-.+ +...|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 455555 78888889999999876432 333443 445677776543 234566555 66889999987
Q ss_pred CceecccceeeeeccCCCCccceEEEEEcC----CCCEEEEEeCCcEEEEECCCCceee
Q 007306 436 WKKLCSKFLHSFQTGLVPETTIVNHIQFHP----DQIHLLSIHEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp----~~~~l~~~~d~~i~iwd~~~~~~~~ 490 (608)
......+.+. ..|+++.+-. ....+++|.+..|.-||..-.+...
T Consensus 83 N~d~Fyke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 83 NSDLFYKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred CchhhhhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 5433333333 4677777632 3455666777788888875444433
No 444
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.88 E-value=4.8 Score=35.79 Aligned_cols=179 Identities=12% Similarity=0.029 Sum_probs=93.9
Q ss_pred eEEEEeCC--CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE-EEEEcCCCcEEEEECCCCceecccceeeeeccCC
Q 007306 376 LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 452 (608)
Q Consensus 376 ~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 452 (608)
.+.+.+.- ..|++||+.+|+.+..-.-....+..=-...-|.. ....-.+|.-..+|.++-+........
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~------- 130 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE------- 130 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC-------
Confidence 55555443 37999999999877544322111211111111222 223345788888998874332222211
Q ss_pred CCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeE---EEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 453 PETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT---YATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 453 ~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~---~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
+.-..+ ..|++.|..+ ....++.-|.++.....++.......+|. -+.| -||...|-.-.+..|..-|.+
T Consensus 131 ---GeGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 131 ---GEGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPD 204 (262)
T ss_pred ---Ccceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCC
Confidence 222333 3455555554 44567777766655444433222223332 2333 256666655566677777888
Q ss_pred CCceeEEEeceeec----cCCCcccccccEEEEEecCCCCEEEEE
Q 007306 529 TLELRCQINLTAYA----QPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 529 ~~~~~~~~~~~~~~----~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
+|+....+...... +.+.+.... +.+++.|+.+++++||
T Consensus 205 sGrV~~widlS~L~~~~~~~~~~~nvl--NGIA~~~~~~r~~iTG 247 (262)
T COG3823 205 SGRVVAWIDLSGLLKELNLDKSNDNVL--NGIAHDPQQDRFLITG 247 (262)
T ss_pred CCcEEEEEEccCCchhcCccccccccc--cceeecCcCCeEEEec
Confidence 99888777644222 112122223 3899999555677776
No 445
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.67 E-value=3.5 Score=43.11 Aligned_cols=130 Identities=12% Similarity=-0.029 Sum_probs=73.9
Q ss_pred EEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCC-CCeEEEEEecCCCEEEEEEc-------------CCeEEEEe
Q 007306 461 IQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK-------------SGHVKVFD 526 (608)
Q Consensus 461 v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~sg~~-------------dg~i~iwd 526 (608)
+...++|.+++... ..++.+|+ .|+.+..+..+... ..=..+..-|+|++|+.+.. ...|..+|
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 66778888777644 88888998 57776666543211 11134667799999988772 23467777
Q ss_pred CCCCceeEEEeceeec-c----------------CCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007306 527 TSTLELRCQINLTAYA-Q----------------PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 527 ~~~~~~~~~~~~~~~~-~----------------~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~ 589 (608)
.+|+.+..+.....+ + .+.......++++.+.|.++.+++|+-.-..|...|..+++-.|..
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 888888877644322 0 0111233447799999966667777766668999998899999887
Q ss_pred CCCC
Q 007306 590 LPFT 593 (608)
Q Consensus 590 ~~~~ 593 (608)
.++.
T Consensus 310 g~~~ 313 (477)
T PF05935_consen 310 GPPG 313 (477)
T ss_dssp S-ST
T ss_pred CCCC
Confidence 7653
No 446
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.67 E-value=8.5 Score=40.86 Aligned_cols=167 Identities=14% Similarity=0.169 Sum_probs=83.2
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..+.-.|.|+.++.++.||.|+++++........|. -..+-..+.|...| |+++..|..+--|.-..--+
T Consensus 18 ~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~--------~~~p~~nlv~tnhg--l~~~tsdrr~la~~~dgvvq 87 (1636)
T KOG3616|consen 18 TAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE--------EAKPKENLVFTNHG--LVTATSDRRALAWKEDGVVQ 87 (1636)
T ss_pred eeeeecCCCceEEEEecCCcEEEEeecccchhhhhh--------hcCCccceeeeccc--eEEEeccchhheeeccCcch
Confidence 344667999999999999999999986321111111 12334445565555 66777777777775433111
Q ss_pred -eee---ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-------CCEEEEEe-CCcEEEEEcCCCceeeEecC
Q 007306 294 -SLE---EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-------GSHLFSAS-GGKISIFSLETFQTLATFAN 361 (608)
Q Consensus 294 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-------~~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 361 (608)
.+. .....++..+.|+.....+.+. -+.|..+... +++=.+-- -..|.+-|+.++.....+..
T Consensus 88 qqfdyndqsekefss~~cdptaqnvvgtl-----cggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~ 162 (1636)
T KOG3616|consen 88 QQFDYNDQSEKEFSSILCDPTAQNVVGTL-----CGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISH 162 (1636)
T ss_pred hhccccchhhhhccceecCchhhhhhhhh-----ccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeec
Confidence 000 1111223334444333322211 1223322222 22222222 45666777766555444332
Q ss_pred CCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc
Q 007306 362 PPPIATYFILLPQDLFAFGFDDSSILVHCPCTKK 395 (608)
Q Consensus 362 ~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~ 395 (608)
..-.|.-+.+-.....+.+....+|.+-|+.+.+
T Consensus 163 ~g~aidelkilgkdryli~~ts~siii~d~es~r 196 (1636)
T KOG3616|consen 163 KGLAIDELKILGKDRYLIAHTSESIIIADLESNR 196 (1636)
T ss_pred CCcchhhhhhccccceEEeeccccEEEeecccch
Confidence 2233333333333344455566677787877653
No 447
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=2.1 Score=43.33 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=61.1
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEe-----C----CCCcee--EEEec--eeeccCCCcccccccEEEEEecCC--C
Q 007306 499 LPITYATYSCDGKCIYVSCKSGHVKVFD-----T----STLELR--CQINL--TAYAQPGTISLELYPLVIAAHPLE--P 563 (608)
Q Consensus 499 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd-----~----~~~~~~--~~~~~--~~~~~~g~~~~~v~~~~v~~sp~d--~ 563 (608)
-.|..+..++.|..++..+.+|.+.++= . +.|+.. ++..+ ..+.. .+..+.+..++|||+. .
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft---ss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT---SSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec---cCCceeeeeccccCCccCC
Confidence 4577888899999999999998765532 1 233322 11111 01111 1233556689999953 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccCCC
Q 007306 564 NRIALGLTNGRVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~~~~~~~~~~ 592 (608)
..|..-+.|..+|+|+.......|..+++
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 68888889999999999998888876655
No 448
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.56 E-value=9.8 Score=36.18 Aligned_cols=209 Identities=13% Similarity=0.120 Sum_probs=111.1
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeCC------CCc-eEEEeeC-----ccccEEEEEEeCCCC------------EE
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILVHCPC------TKK-TKAKLKG-----HQNRITCLAYSLSLN------------VL 419 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~vwd~~------~~~-~~~~~~~-----~~~~v~~~~~~~~~~------------~l 419 (608)
.-+.++++|.+ ..++....+...+||.. ..+ .+-.+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34789999999 77777778899999986 121 2222221 124567777765332 25
Q ss_pred EEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC--CCCEEEEE--eCCcEEEEECCCCcee--eeec
Q 007306 420 VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSI--HEGQIDVYEAPTLNHT--SQLV 493 (608)
Q Consensus 420 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~~--~d~~i~iwd~~~~~~~--~~~~ 493 (608)
+.+++||+|.-|...-...........+...... .--..+++.. .+.+|+.. ..++|.+||-.-.+.. ..+.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 6788999999998533211000111101111110 1233455553 36677764 7899999986422211 0111
Q ss_pred CC---CCCC--Ce---------EEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEe
Q 007306 494 PD---KMDL--PI---------TYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 559 (608)
Q Consensus 494 ~~---~~~~--~v---------~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 559 (608)
.+ .... .| +-..-.++++.=+.|..-|.|-+||.. |+++.++... |. -..-| .++..
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~-----g~-LNaPW--G~a~A 252 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASS-----GR-LNAPW--GLAIA 252 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccC-----Cc-ccCCc--eeeeC
Confidence 10 0000 01 111111222222233334789999986 6666666432 21 22234 45554
Q ss_pred cC-----CCCEEEEEeCCCcEEEEeCCCCc
Q 007306 560 PL-----EPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 560 p~-----d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
|. .+.+|+----||+|..+|+.+++
T Consensus 253 Pa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 253 PESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 42 24566666689999999998876
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.49 E-value=4.4 Score=43.64 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=68.0
Q ss_pred CeEEEEEe----CCEEEEEe-CCcEEEEEcCC-------C----c---------eeeEecCCCCCeEEEEEc--CCC-eE
Q 007306 326 SISCFALR----GSHLFSAS-GGKISIFSLET-------F----Q---------TLATFANPPPIATYFILL--PQD-LF 377 (608)
Q Consensus 326 ~v~~v~~s----~~~l~s~~-d~~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~-~l 377 (608)
.|+.+... ...|+.|. ||.|.+|.+++ . . +...+ .-...++.++++ ... +|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 35555555 34666666 89999997632 1 0 01111 123467889998 556 88
Q ss_pred EEEeCCCcEEEEeCCCC--ceE-EEeeCccccEEEEEEeCCC---C---EEEEEcCCCcEEEEEC
Q 007306 378 AFGFDDSSILVHCPCTK--KTK-AKLKGHQNRITCLAYSLSL---N---VLVSSGADAQLCVWDA 433 (608)
Q Consensus 378 ~~~~~d~~i~vwd~~~~--~~~-~~~~~~~~~v~~~~~~~~~---~---~l~s~~~d~~i~vwd~ 433 (608)
|+++....|.||-.... +.. ..-..+...|.+|+|-++. . ++++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888877754431 111 1111256678999997643 2 7888999999999888
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.33 E-value=1 Score=41.33 Aligned_cols=74 Identities=9% Similarity=0.143 Sum_probs=52.5
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceeccc-ceeeeec-------cCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSK-FLHSFQT-------GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 483 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~-~~~~~~~-------~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~ 483 (608)
+..+++++++.+.+|.+++||+.+.+..... .+..+.. ... ..|..+.++.+|.-+++-.+|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~---~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSS---PNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCC---CcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4457889999999999999999986543222 1221222 122 5788999999998888767788999998
Q ss_pred CCCce
Q 007306 484 PTLNH 488 (608)
Q Consensus 484 ~~~~~ 488 (608)
.-+.-
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 64443
No 451
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.24 E-value=14 Score=37.25 Aligned_cols=198 Identities=10% Similarity=-0.050 Sum_probs=107.1
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCC--CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCcc-ccEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPP--PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITC 409 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~ 409 (608)
+..++.+. +|.|.-.|..+++.+....... ..+.+-....+|.++.++.++.++.+|..+|+.+....... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 44555555 8888888988888765444221 22222223336688889999999999998999887776554 11222
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe--CCcEEEEECCCCc
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--EGQIDVYEAPTLN 487 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--d~~i~iwd~~~~~ 487 (608)
-....++ .+..++.++.+.-.|..+++..-......- .. ..+..-....++...+... ++.+.-.|..+|.
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP-LS-----LSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc-cc-----cccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 2222233 333344678888888777654322112100 00 0111111122333333333 4567777777777
Q ss_pred eeeeecCCCC--CCCeEEEEEec-----CCCEEEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 488 HTSQLVPDKM--DLPITYATYSC-----DGKCIYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 488 ~~~~~~~~~~--~~~v~~~~~s~-----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
.......... ...+....... .+.-++.++.++.+...+..+++.+..+..
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 6655321100 11110010111 122346677788899999999999888765
No 452
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.63 E-value=0.03 Score=55.37 Aligned_cols=146 Identities=12% Similarity=0.105 Sum_probs=99.5
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECC
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP 484 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~ 484 (608)
.....|-|.+.-++.++.+..+..||-... ..+. ...+ +....++|..+|..+++ . ..+.+.+||+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le----~n~t--g~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILE----LNPT--GKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc-----eecc----cCCc--hhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 345568887777888898999999986651 1111 1111 45567889988888777 4 78899999996
Q ss_pred CCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 485 TLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 485 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
+... .++..+ .+.... +.|++.+..++.|...|.+.|++..+.+.+... | .+.-+.++.+|.+ .
T Consensus 106 ~eyt-qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~--------G--kh~RRgtq~av~l--E 170 (615)
T KOG2247|consen 106 SEYT-QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM--------G--KHQRRGTQIAVTL--E 170 (615)
T ss_pred hhhH-HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh--------c--ccccceeEEEecc--c
Confidence 5432 222222 223333 789999999999989999999999887655443 4 1223355899998 4
Q ss_pred CEEEEEeCCCcEEEE
Q 007306 564 NRIALGLTNGRVHVI 578 (608)
Q Consensus 564 ~~las~s~Dg~v~iW 578 (608)
++.+.++.|..+.+-
T Consensus 171 d~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 171 DYVILCDCDNTLSVT 185 (615)
T ss_pred ceeeecCcHHHHHHh
Confidence 678888877655443
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.62 E-value=4.5 Score=40.05 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=59.7
Q ss_pred ceEEEEEcCCCCEEEEEeCCcEEEEECCCCce---eeeec--CCCCCCCeEEEEEecC---CCEEEE-EEcC--------
Q 007306 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH---TSQLV--PDKMDLPITYATYSCD---GKCIYV-SCKS-------- 519 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~---~~~~~--~~~~~~~v~~~~~s~~---~~~l~s-g~~d-------- 519 (608)
..++|+|.|||+.+++-..|.|++++ ..+.. +..+. ..........++++|+ ..+|+. .+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999999998887899999999 44443 22221 1123667899999994 234433 3321
Q ss_pred CeEEEEeCCCC--ce---eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCc
Q 007306 520 GHVKVFDTSTL--EL---RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 520 g~i~iwd~~~~--~~---~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 574 (608)
..|.-|....+ .. ...+........+ .|... .++|.| |+.+.++.++.+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~--~H~g~--~l~fgp-DG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSG--NHNGG--GLAFGP-DGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSS--SS-EE--EEEE-T-TSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCC--CCCCc--cccCCC-CCcEEEEeCCCCC
Confidence 24554555443 11 1111111110011 23333 799999 7877777765543
No 454
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.25 E-value=18 Score=36.60 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=65.3
Q ss_pred cceEEEEEcCCCCEEEEEeCCcEEEEECCCCc-----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 456 TIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
..++++.+.+++..++++..|.+.. ....+. .............+.++.|.+++..+++| .+|.+.... ..|
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G 357 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGG 357 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCC
Confidence 5688999999999998887777544 343443 12222211113458899999888766666 667666553 444
Q ss_pred ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEE
Q 007306 531 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 578 (608)
Q Consensus 531 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 578 (608)
+.-...... .+. ..+.| .+.|.+ ++.-+++ +.+|.|.-|
T Consensus 358 ~tW~~~~~~----~~~-~~~ly--~v~f~~-~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 358 KSWKRDKGA----DNI-AANLY--SVKFFD-DKKGFVL-GNDGVLLRY 396 (398)
T ss_pred cceeEcccc----CCC-Cccee--EEEEcC-CCceEEE-eCCcEEEEe
Confidence 432322110 011 23456 888877 4555555 467876554
No 455
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.09 E-value=4.6 Score=40.18 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=89.9
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceE-EEEEcCCCCEEEE-EeCCcEEEE-
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN-HIQFHPDQIHLLS-IHEGQIDVY- 481 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~sp~~~~l~~-~~d~~i~iw- 481 (608)
..|..+-..|||+.+..-+. .++.++++.+......+.+. ...+... ..|+ .+..-..|.-+++ ..||.|.-|
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~-dspg~~~--~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVD-DSPGDSR--HQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhh-cCCCchH--HHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 44666778999998877665 78889998874433332222 1111000 1122 1222223444444 577777665
Q ss_pred ECCCCc-----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEE
Q 007306 482 EAPTLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 482 d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
|++.+. .++.+... ..++..+.-..+.+-+++-+..|++.++.....+.+-.-+.. . . +.-+
T Consensus 297 dvr~~~~p~l~h~R~f~l~--pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~--------~-~--~~~~ 363 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLA--PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAY--------Q-A--PQLV 363 (733)
T ss_pred eeecCCCCcceeeeccccC--cccceeeccccccceEEEEcCCCceeeeecccCcceehhhhh--------c-C--ccee
Confidence 544321 22222211 233333333334456777778888888876655443222110 1 1 2268
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 557 AAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 557 ~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
++|| +++++++- +.|.++++.+++..+
T Consensus 364 ~~Sp-~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSP-NQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred eeCc-ccchheee-cCCceEEEEecCCCC
Confidence 8999 78888876 467899999988765
No 456
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.97 E-value=0.78 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=24.5
Q ss_pred CcEEEEEEeeCC---CEEEEEeCCCcEEEEecCC
Q 007306 260 GRVVRLIYSHSG---DFLVALTQTATHKLWKWQS 290 (608)
Q Consensus 260 ~~V~~~~fsp~g---~~l~s~s~dg~i~iw~~~~ 290 (608)
+.|.+++|||+. .+|+.+-..|.+.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4777777779999998864
No 457
>PRK13684 Ycf48-like protein; Provisional
Probab=90.92 E-value=18 Score=35.86 Aligned_cols=154 Identities=6% Similarity=-0.048 Sum_probs=86.6
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEE-EeCCCCc-eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCcee
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILV-HCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL 439 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~v-wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 439 (608)
...+.++.+.|++ .++++. .|.+.. +| ..++ -...-..-...++++.+.++++.++++ ..|.+.+=..+.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s- 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES- 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc-
Confidence 4567889999988 655554 554443 22 2222 222222344678899999999877665 457664322333211
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEc
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
...+. ...... ...+.++.+.|++..++++.+|.+. .....|+.-..... ..-....+.+.|..+++.+++| .
T Consensus 248 -W~~~~-~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~ 321 (334)
T PRK13684 248 -WSKPI-IPEITN--GYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-Q 321 (334)
T ss_pred -ccccc-CCcccc--ccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-C
Confidence 11111 110000 0357789999998888888888665 34444444333321 1113467788888777766655 5
Q ss_pred CCeEEEEe
Q 007306 519 SGHVKVFD 526 (608)
Q Consensus 519 dg~i~iwd 526 (608)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 67776665
No 458
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.80 E-value=0.84 Score=29.04 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=26.0
Q ss_pred ccEEEEEEeCCC---CEEEEEcCCCcEEEEECCC
Q 007306 405 NRITCLAYSLSL---NVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 405 ~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~ 435 (608)
+.|+++.|+|+. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368999999854 4888888889999999995
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.79 E-value=18 Score=35.69 Aligned_cols=152 Identities=13% Similarity=0.051 Sum_probs=84.4
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCc------EEEEeCCC--C--ceEE-----EeeCccc--------cEEEEEEeCCCCE
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSS------ILVHCPCT--K--KTKA-----KLKGHQN--------RITCLAYSLSLNV 418 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~------i~vwd~~~--~--~~~~-----~~~~~~~--------~v~~~~~~~~~~~ 418 (608)
-+.++.+.+.+++ .+++-+++|. +..+++.. + ..+. .+....+ ..-++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 3566788888655 6666677776 65555443 1 1111 1111111 3447888788888
Q ss_pred EEEEcCC------CcEEEEECCCCceecccceeeee--c----cCCCCccceEEEEEcCCCCEEEEE------eCC--c-
Q 007306 419 LVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQ--T----GLVPETTIVNHIQFHPDQIHLLSI------HEG--Q- 477 (608)
Q Consensus 419 l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~--~----~~~~~~~~v~~v~~sp~~~~l~~~------~d~--~- 477 (608)
+++.-.+ ..|..++.. ++......+.... . ...+.....-+++++|+|+.|++. .|+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8877666 778888876 3332222121111 0 011112568899999999955542 232 1
Q ss_pred ------EEE--EECCC-Cceeeeec--CCC-----CCCCeEEEEEecCCCEEEE
Q 007306 478 ------IDV--YEAPT-LNHTSQLV--PDK-----MDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 478 ------i~i--wd~~~-~~~~~~~~--~~~-----~~~~v~~~~~s~~~~~l~s 515 (608)
+++ ||..+ +.....+. ... ....++.+.+-+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 45444 32333322 211 2567889999999997774
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.71 E-value=8.4 Score=31.74 Aligned_cols=117 Identities=7% Similarity=0.005 Sum_probs=69.9
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCcee---cccceeeeeccCCCCccceEEEEEcC-----CCCEEEEEeCCcEEEEE
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKL---CSKFLHSFQTGLVPETTIVNHIQFHP-----DQIHLLSIHEGQIDVYE 482 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~v~~v~~sp-----~~~~l~~~~d~~i~iwd 482 (608)
.|......|++++.-|+|.+++....... ....+..+.-+ ..|++++-.+ +...|+.|+...+..||
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-----~~italaaG~l~~~~~~D~LliGt~t~llaYD 79 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-----QEITALAAGRLKPDDGRDCLLIGTQTSLLAYD 79 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-----CceEEEEEEecCCCCCcCEEEEeccceEEEEE
Confidence 45555557888888889999987643211 11222211112 3567765443 34567779999999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEec----CCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYSC----DGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
+....-+.--. -...+.++.+.. +..+++.| .+..|.-||.+..+...+.
T Consensus 80 V~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhh---CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 98665432221 246677777653 33445554 4677888887766655544
No 461
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.64 E-value=23 Score=36.72 Aligned_cols=271 Identities=13% Similarity=0.110 Sum_probs=135.1
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 337 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l 337 (608)
..+|..+.|.-.|. +-.|+.||-.+ ||..+++.++.... ....+|.++.-+ ...+
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dGL~~----------------------fd~~~gkalql~s~-~~dk~I~al~~d~qg~L 219 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDGLSY----------------------FDAGRGKALQLASP-PLDKAINALIADVQGRL 219 (671)
T ss_pred CccceeeeeeccCc-EEEecCCcceE----------------------EccccceEEEcCCC-cchhhHHHHHHHhcCcE
Confidence 56788888888886 56677777653 45555555543322 133566666666 7788
Q ss_pred EEEeCCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCc--cccEEEEEEeC
Q 007306 338 FSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH--QNRITCLAYSL 414 (608)
Q Consensus 338 ~s~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~ 414 (608)
..|+|.-+.+.+.+..+...-.. -..+.|..+.-..+|.+-.|+.+|..+.--.+.+-.+...+.| .+.|.++..+.
T Consensus 220 WVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~ 299 (671)
T COG3292 220 WVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT 299 (671)
T ss_pred EEEeccceEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeecc
Confidence 88997777887766422211111 1233444444334447777777776544433333222222222 24566666666
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC--CCCEEEE-EeCCcEEEEECCCCceeee
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~-~~d~~i~iwd~~~~~~~~~ 491 (608)
+|+ +-+++.++.+++-+..- ... ..+. ...| ..+...+..| .+..+-. -+.|.+.+-+-.+|..++.
T Consensus 300 dGs-LWv~t~~giv~~~~a~w-~~m--a~in-~~dG-----~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~s 369 (671)
T COG3292 300 DGS-LWVGTYGGIVRYLTADW-KRM--AVIN-DSDG-----GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRS 369 (671)
T ss_pred CCC-EeeeccCceEEEecchh-hhe--eeee-cCCC-----chhhhhccCchhcccceeeccccceEEEecCCCCcEEEE
Confidence 665 44566666555433221 000 0011 0111 1111222222 1111111 1223344445556666555
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC-CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
...- ....|+..++..+|. +-.|+..+-+..|+..+ +....... |-..+.+. ++-=.| +++ |-.|+
T Consensus 370 v~q~-Rg~nit~~~~d~~g~-lWlgs~q~GLsrl~n~n~~avlde~a-------gl~ss~V~--aived~-dns-LWIGT 436 (671)
T COG3292 370 VHQL-RGMNITTTLEDSRGR-LWLGSMQNGLSRLDNKNEWAVLDEDA-------GLPSSEVS--AIVEDP-DNS-LWIGT 436 (671)
T ss_pred eeec-cccccchhhhccCCc-EEEEecccchhhhccCCccccccccc-------CCccccee--eeeecC-CCC-EEEec
Confidence 4322 256677777777554 45555554466666665 22222111 11122333 666667 444 77888
Q ss_pred CCCcEE
Q 007306 571 TNGRVH 576 (608)
Q Consensus 571 ~Dg~v~ 576 (608)
.+|.++
T Consensus 437 s~Glvk 442 (671)
T COG3292 437 SGGLVK 442 (671)
T ss_pred cCCeEe
Confidence 887654
No 462
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.81 E-value=1.4 Score=42.99 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHhhcCccc----------cHHHHHHHHhcCCHHHHHHHHhhc-ccCCCCCcceeehhHH
Q 007306 16 LITLIMKFLEEENFKESLQALEQESKIFF----------NVHRFGEIVMNGEWEKAEKYLSAF-TKLDDSNHSKKMFFEL 84 (608)
Q Consensus 16 ivrli~q~L~~~g~~~s~~~L~~Es~~~~----------~~~~~~~~i~~G~w~~~~~~l~~~-~~~~~~~~~~~~~~~i 84 (608)
|-.+|..++...|+...+..|-+|+|... ++.++-+++.+|+-.-|++.+..- ..+. +....++|. +
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~-~~~s~LE~~-L 196 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLK-EKSSSLEFK-L 196 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhc-cccccHHHH-H
Confidence 56889999999999999999999999975 288999999999999999988763 1122 223456777 8
Q ss_pred hhhHHHHHHhhcC
Q 007306 85 RKHKYCEALCRQQ 97 (608)
Q Consensus 85 ~~~~~le~l~~~~ 97 (608)
..+.|++++....
T Consensus 197 h~l~fl~l~~~g~ 209 (394)
T KOG2817|consen 197 HSLHFLSLIRGGK 209 (394)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988744
No 463
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.52 E-value=26 Score=35.64 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=79.7
Q ss_pred CCCeEEEeecCCeEEEeeccCCCCC--CceeeEeecCCCCCCcEEEEEEee----CCCEEEEEeCCCcEEEEecCCCcce
Q 007306 221 DADSAVCAKSLEKSVNLKLQLINEP--SECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 221 dg~~l~~~~~d~~i~iWd~~~~~~~--~~~~~~~l~~~~h~~~V~~~~fsp----~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
+...|++||..|.++|++.....-. ..+.... -..+|..++.-+ .....++.-.-..+.||.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-----cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 4468999999999999998643211 1222222 366888887643 1222333344566777766222110
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCC--eEEEEE---e---C-CEEEEEe-CCcEEEEEcCCCceeeEecCCCC
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDS--ISCFAL---R---G-SHLFSAS-GGKISIFSLETFQTLATFANPPP 364 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~v~~---s---~-~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~ 364 (608)
...|...+....-.|.-. ...+++ - + .++..-+ ||.+.+++-+.....+.+.. .-
T Consensus 111 --------------~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~l 175 (418)
T PF14727_consen 111 --------------VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FL 175 (418)
T ss_pred --------------cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CC
Confidence 011111110000012211 122222 2 1 3566667 99999999775443333332 11
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeC
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILVHCP 391 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~vwd~ 391 (608)
-...+.+.+.. .|++++.+..+..|..
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 12245677777 8888888888887764
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.43 E-value=15 Score=37.74 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=60.8
Q ss_pred cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc-CCCCccceEEEEEcCCC------CEEEEE--e
Q 007306 404 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQ------IHLLSI--H 474 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~~------~~l~~~--~ 474 (608)
-.....|+|.|||++|++--..|.|++++..+........+...... .. +....|+++|+- .+|+++ .
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge---~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQH---NGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCC---CceeeEEECCCccccCCCcEEEEEEec
Confidence 34578899999998877665569999998655332111111111111 12 578899999884 345543 1
Q ss_pred ---------CCcEEEEECCCC-------cee-eeecCCCCCCCeEEEEEecCCCEEEEEEcC
Q 007306 475 ---------EGQIDVYEAPTL-------NHT-SQLVPDKMDLPITYATYSCDGKCIYVSCKS 519 (608)
Q Consensus 475 ---------d~~i~iwd~~~~-------~~~-~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d 519 (608)
...|.-|.+... +.+ ..+... ....-..++|.|||.+.++.+..
T Consensus 106 ~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~-~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG-NDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred cCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC-CCcCCceEEECCCCcEEEEECCC
Confidence 123444544311 111 111111 12234567899999866654443
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.40 E-value=16 Score=32.98 Aligned_cols=115 Identities=12% Similarity=-0.012 Sum_probs=68.7
Q ss_pred EEEEcCCCeEEEEeCCCcEEEEeCCC--CceEEEeeCccccEEEEEEeCCCCEEEEEcCCC------cEEEE---ECCCC
Q 007306 368 YFILLPQDLFAFGFDDSSILVHCPCT--KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA------QLCVW---DAVGW 436 (608)
Q Consensus 368 ~~~~~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------~i~vw---d~~~~ 436 (608)
.++-.+.+.|+.+...+.|.+|++.+ .+....|.. -+.|..+.++..|+++++--.+. .+|+| +....
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 34444534333335667899999883 355566664 37899999999999999864332 45554 33210
Q ss_pred ceecccceeeeeccCC------------------CCccceEEEEEcCCCCEEEEEeCCcEEEEECCCC
Q 007306 437 KKLCSKFLHSFQTGLV------------------PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTL 486 (608)
Q Consensus 437 ~~~~~~~~~~~~~~~~------------------~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~ 486 (608)
+ ..++.....||. |...++.+++..|-..-|++|.++.+.+|.+...
T Consensus 101 ~---~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 101 E---NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred c---CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 0 111111111210 1124567788888766777888889999987543
No 466
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=89.30 E-value=0.46 Score=40.53 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccCCCCCcceeehhHHhhhHHHHHHhhcC
Q 007306 46 VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFELRKHKYCEALCRQQ 97 (608)
Q Consensus 46 ~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~le~l~~~~ 97 (608)
...++++|++|+++.|++.+....+--......+.|. |+.|+|+|++.++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~-L~~q~fiell~~~~ 55 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFE-LRCQQFIELLREGD 55 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHH-HHHHHHHHHHHHHh
Confidence 5788999999999999999987411101112445677 99999999999754
No 467
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.18 E-value=19 Score=39.08 Aligned_cols=143 Identities=14% Similarity=0.147 Sum_probs=83.9
Q ss_pred CCEEEEEeCCcEEEEEcCCCcee------eEec----------------CCCCCeEEEEEcCCC---eEEEEeCCCcEEE
Q 007306 334 GSHLFSASGGKISIFSLETFQTL------ATFA----------------NPPPIATYFILLPQD---LFAFGFDDSSILV 388 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~------~~~~----------------~~~~~v~~~~~~~~~---~l~~~~~d~~i~v 388 (608)
.++++.+..+.|.||+...-... ..+. .....|+.+....=| .|+.|.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 56788888999999998542221 1110 011234444433322 8899999999999
Q ss_pred EeCCC-------C----c---------eEEEeeCccccEEEEEEe--CCCCEEEEEcCCCcEEEEECCCCceecccceee
Q 007306 389 HCPCT-------K----K---------TKAKLKGHQNRITCLAYS--LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 389 wd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 446 (608)
|...+ . . +...++ -...+.+++++ ...+++|+++....|.||-....... ......
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r-~~~~~s 206 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER-FYHVPS 206 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc-cccccc
Confidence 96531 0 0 111122 23467888988 77788888888888888765542110 011111
Q ss_pred eeccCCCCccceEEEEEcCCC-----C-EEEE-EeCCcEEEEEC
Q 007306 447 FQTGLVPETTIVNHIQFHPDQ-----I-HLLS-IHEGQIDVYEA 483 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~-----~-~l~~-~~d~~i~iwd~ 483 (608)
.... ..|.+|+|-++. . .+++ +-.|.+.+|++
T Consensus 207 ~~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccc-----cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1223 358899997653 2 4444 56788888777
No 468
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.15 E-value=43 Score=37.58 Aligned_cols=123 Identities=19% Similarity=0.164 Sum_probs=77.6
Q ss_pred ccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC------C-CccceEEEEEcCCCCEEEEEeCC
Q 007306 405 NRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV------P-ETTIVNHIQFHPDQIHLLSIHEG 476 (608)
Q Consensus 405 ~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------~-~~~~v~~v~~sp~~~~l~~~~d~ 476 (608)
.+...++|+| +...||.....|...|||+..........+. ....+. + ....-..+.|.++...|+++...
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~-~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLR-LSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCccee-eccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 4567899999 5568999999999999999322221111111 111111 0 00233478899998999999889
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecC--CCEEEEEEcCCeEEEEeCCCC
Q 007306 477 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD--GKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 477 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg~i~iwd~~~~ 530 (608)
.+.++|+++......+........|..+.-+++ +..++.. ...|...++...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 999999987765332322233677888888877 3333222 256777777663
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.79 E-value=27 Score=34.85 Aligned_cols=191 Identities=12% Similarity=0.022 Sum_probs=101.7
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe----CCCCE--EEEEc-CC---CcEEEEECCCCceeccccee
Q 007306 376 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS----LSLNV--LVSSG-AD---AQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~s~~-~d---~~i~vwd~~~~~~~~~~~~~ 445 (608)
+++....++-+.+||+. |+.++.+. .++++.+..- -+|+. |+.++ .+ .+|++|.+.... ..+.
T Consensus 70 lIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~----g~L~ 142 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT----GELT 142 (381)
T ss_dssp EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT----TEEE
T ss_pred eEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC----Ccce
Confidence 67777788899999997 56666664 2344444332 23443 34443 22 469999775311 1121
Q ss_pred ee-------eccCCCCccceEEEEE--cC-CCCEEEE--EeCCcEEEEECC---CC----ceeeeecCCCCCCCeEEEEE
Q 007306 446 SF-------QTGLVPETTIVNHIQF--HP-DQIHLLS--IHEGQIDVYEAP---TL----NHTSQLVPDKMDLPITYATY 506 (608)
Q Consensus 446 ~~-------~~~~~~~~~~v~~v~~--sp-~~~~l~~--~~d~~i~iwd~~---~~----~~~~~~~~~~~~~~v~~~~~ 506 (608)
.+ ..+. ..+..+|+ +| +|.+.+. ..+|.+..|.+. .+ +.+++|.. ...+-.|..
T Consensus 143 ~v~~~~~p~~~~~----~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVV 215 (381)
T PF02333_consen 143 DVTDPAAPIATDL----SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVV 215 (381)
T ss_dssp E-CBTTC-EE-SS----SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEE
T ss_pred EcCCCCccccccc----ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEE
Confidence 11 1111 24667776 44 4554443 477877766653 33 46778865 457889999
Q ss_pred ecCCCEEEEEEcCCeEEEEeCCCCc--eeEEEeceeeccCCCcccccccEEEEEecCCCCE-EEEEeCCCcEEEEeCCCC
Q 007306 507 SCDGKCIYVSCKSGHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR-IALGLTNGRVHVIEPLES 583 (608)
Q Consensus 507 s~~~~~l~sg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~-las~s~Dg~v~iW~~~~~ 583 (608)
.....+|+.|-++--|.-|+.+... ....+.. ...++-...+.-+.+...++...| |||.-.+++..||+....
T Consensus 216 DDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~---~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 216 DDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVAS---ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ETTTTEEEEEETTTEEEEEESSCCC-S--EEEEE---BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecccCCEEEecCccEEEEEecCCCCCCcceeeec---ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999999888888876322 1111110 000111233442334333422234 445447789999998764
No 470
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.68 E-value=2.5 Score=38.89 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=48.9
Q ss_pred EecCCCEEEEEEcCCeEEEEeCCCCceeEEEe-ceeeccC----CCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 506 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN-LTAYAQP----GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 506 ~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~~~----g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
+..++.+|++-+.+|.+++||+.+++....-. ....... +. .....++.+..+. +|.-+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~-~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDK-SSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccC-CCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence 55678999999999999999999987654331 0000100 00 1223345777887 677777765 578899987
Q ss_pred CCC
Q 007306 581 LES 583 (608)
Q Consensus 581 ~~~ 583 (608)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 654
No 471
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=88.50 E-value=23 Score=33.56 Aligned_cols=152 Identities=10% Similarity=0.011 Sum_probs=87.7
Q ss_pred CCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC---ceEE
Q 007306 324 KDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK---KTKA 398 (608)
Q Consensus 324 ~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~---~~~~ 398 (608)
..-+..+.+++++...+. +.-+++.|+.+...-..+..-.-.=..-.|.-.| +..++..|.-+.+.|+.+. ....
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lag 165 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAG 165 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeee
Confidence 455667788888888888 7889999998754433332111101122334445 6666665666667777654 2333
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcE
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQI 478 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i 478 (608)
.+......-..++.+ |++...+..|+-+.+-|+..... +. +.++......+.++..+++..+++.... .+
T Consensus 166 rya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~s----Pv---li~~~n~g~g~~sv~vsdnr~y~vvy~e-gv 235 (370)
T COG5276 166 RYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHS----PV---LIGSYNTGPGTYSVSVSDNRAYLVVYDE-GV 235 (370)
T ss_pred eeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCC----Ce---EEEEEecCCceEEEEecCCeeEEEEccc-ce
Confidence 444344444555555 66777778899999999987431 11 1111111136778888887666655333 34
Q ss_pred EEEECCC
Q 007306 479 DVYEAPT 485 (608)
Q Consensus 479 ~iwd~~~ 485 (608)
.+-|..+
T Consensus 236 livd~s~ 242 (370)
T COG5276 236 LIVDVSG 242 (370)
T ss_pred EEEecCC
Confidence 4555543
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=6.3 Score=44.75 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=91.0
Q ss_pred eCCCcEEEEeCCCCceEEEeeCccccEEEEEE--------eCCCCEEEEEcCCCcEEEEECCCCceecccc-eee---ee
Q 007306 381 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAY--------SLSLNVLVSSGADAQLCVWDAVGWKKLCSKF-LHS---FQ 448 (608)
Q Consensus 381 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~---~~ 448 (608)
+.|+.+.+|+..++.....+.+-...|..|.. .|.=+++.....--.|.++-+.-.+...... +.+ +.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999998777777776666666643 2222344444445566666543322111111 000 11
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEeCCcEEEE--ECCCC---c-e----------------eeeecCCCCCCCeEEEEE
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVY--EAPTL---N-H----------------TSQLVPDKMDLPITYATY 506 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iw--d~~~~---~-~----------------~~~~~~~~~~~~v~~~~~ 506 (608)
. .+ ..|+++....+|+.+++|.||.|+=. ....+ + + +-.+. +.+..+|..+++
T Consensus 176 ~--dg--~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 176 V--DG--VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIRQITI 250 (1311)
T ss_pred c--CC--ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcceeeEe
Confidence 1 11 46889998999999999988855322 22111 1 1 01121 134779999999
Q ss_pred ecCCCEEEEEEcCCeEEEEeCCC
Q 007306 507 SCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 507 s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
......+++=++.|+|.+|++..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 99899999999999999999986
No 473
>PRK10115 protease 2; Provisional
Probab=88.09 E-value=47 Score=36.71 Aligned_cols=239 Identities=8% Similarity=0.008 Sum_probs=112.0
Q ss_pred cEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEE
Q 007306 261 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 338 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~ 338 (608)
.+..+.+||||++|+.+...+--.- +.+.+.|..+|..+...+ ...-..++|. ++.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~----------------~~l~v~d~~tg~~l~~~i----~~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQ----------------YGIRFRNLETGNWYPELL----DNVEPSFVWANDSWTFY 187 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEE----------------EEEEEEECCCCCCCCccc----cCcceEEEEeeCCCEEE
Confidence 4667889999998887655321111 112344555554322111 1111458888 55554
Q ss_pred EEe-C------CcEEEEEcCCC--ceeeEecCCCCCeE-EEEEcCCC-eEEEEe---CCCcEEEEeCC--CCceEEEeeC
Q 007306 339 SAS-G------GKISIFSLETF--QTLATFANPPPIAT-YFILLPQD-LFAFGF---DDSSILVHCPC--TKKTKAKLKG 402 (608)
Q Consensus 339 s~~-d------~~i~vwd~~~~--~~~~~~~~~~~~v~-~~~~~~~~-~l~~~~---~d~~i~vwd~~--~~~~~~~~~~ 402 (608)
... + ..|..+++.++ +....+........ .+..+.++ .++..+ .++.+.+++.. ++.....+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 443 2 25778888887 44445554333333 23334366 443333 33578888842 3432222222
Q ss_pred ccccEEEEEEeCCCCEEEEEcCC---CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCc
Q 007306 403 HQNRITCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQ 477 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~ 477 (608)
.......+. +..+.+++....+ ..|...++... .....+...... ..+..+.+. +..|+. . .++.
T Consensus 268 ~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~-----~~~~~l~~~~~~--~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 268 RKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDE-----QQWEELIPPREN--IMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred CCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCc-----ccCeEEECCCCC--CEEEEEEEE--CCEEEEEEEeCCE
Confidence 222222222 3333333333222 23444444321 111212222111 357778887 335554 3 4554
Q ss_pred --EEEEECCCCceeeeecCCCCCCCeEEEEEe--cCCC-EEEEEEc---CCeEEEEeCCCCc
Q 007306 478 --IDVYEAPTLNHTSQLVPDKMDLPITYATYS--CDGK-CIYVSCK---SGHVKVFDTSTLE 531 (608)
Q Consensus 478 --i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~-~l~sg~~---dg~i~iwd~~~~~ 531 (608)
+++++..++ .+..+... ....+..+.++ +++. ++++.+. -+.++.+|..+++
T Consensus 338 ~~l~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTR-EVIGIAFD-DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCC-ceEEecCC-CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 555665433 33444311 12223333444 4444 4444333 3789999998875
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.00 E-value=17 Score=37.43 Aligned_cols=54 Identities=15% Similarity=-0.009 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCEEEEEe-CCcEEEEECCCCce--eeeec---CCCCCCCeEEEEEecCC
Q 007306 457 IVNHIQFHPDQIHLLSIH-EGQIDVYEAPTLNH--TSQLV---PDKMDLPITYATYSCDG 510 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~~-d~~i~iwd~~~~~~--~~~~~---~~~~~~~v~~~~~s~~~ 510 (608)
....|+|.|||+++++-. .|.|++++-.++.. +..+. ..........++++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 467899999999888876 69999998655432 21111 11125678899999874
No 475
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=87.91 E-value=0.72 Score=34.19 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHhhcCccc
Q 007306 14 THLITLIMKFLEEENFKESLQALEQESKIFF 44 (608)
Q Consensus 14 ~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~ 44 (608)
.-|.-||..||+-+||+.|+.+|+.|||..-
T Consensus 19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~ 49 (81)
T PF09398_consen 19 RLINELIREYLEFNNLDYTLSVFQPESGQPE 49 (81)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence 3467899999999999999999999999853
No 476
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.68 E-value=1.4 Score=47.39 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=38.8
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCC-----CCceEEEeeCcc-ccEEEEEEeCC-------C--CEEEEEc-CCCcEEEEEC
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPC-----TKKTKAKLKGHQ-NRITCLAYSLS-------L--NVLVSSG-ADAQLCVWDA 433 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~-----~~~~~~~~~~~~-~~v~~~~~~~~-------~--~~l~s~~-~d~~i~vwd~ 433 (608)
.+||| .++.+..||.++.|.+. .-.++..++.|. .+-.|..++.+ + .++++++ .+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 67777 77777778877766542 224455566665 33333333322 1 2344443 3567899988
Q ss_pred CCCce
Q 007306 434 VGWKK 438 (608)
Q Consensus 434 ~~~~~ 438 (608)
..+++
T Consensus 323 a~w~C 327 (1283)
T KOG1916|consen 323 APWQC 327 (1283)
T ss_pred cchhh
Confidence 77544
No 477
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=18 Score=36.33 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=62.1
Q ss_pred cceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeee--ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCce
Q 007306 456 TIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ--LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 532 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~ 532 (608)
++|.++.||+|.+.+++ -.+++|.+++....+.... .........|...+|+.+ .-+|.-+..| +-+|.....+.
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr 144 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR 144 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh
Confidence 78999999999999999 5899999999843332211 111112556889999876 4455444433 55665544322
Q ss_pred eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 533 RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 533 ~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.-++. ....+.+....|.| +.+.+.-++
T Consensus 145 slRlV---------ks~~~nvnWy~yc~-et~v~LL~t 172 (657)
T KOG2377|consen 145 SLRLV---------KSHNLNVNWYMYCP-ETAVILLST 172 (657)
T ss_pred hhhhh---------hhcccCccEEEEcc-ccceEeeec
Confidence 11111 12334455788888 566544443
No 478
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=87.46 E-value=40 Score=38.37 Aligned_cols=153 Identities=16% Similarity=0.069 Sum_probs=81.3
Q ss_pred CEEEEEeC---------CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEeC
Q 007306 272 DFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASG 342 (608)
Q Consensus 272 ~~l~s~s~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~d 342 (608)
.||+.|.. -|.+.|+|+-.-- |..=.+.+...++....+..+++|..++=-..+|+++..
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVV-----------PepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~G 1115 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVV-----------PEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQG 1115 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEec-----------CCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccC
Confidence 47887764 2788888762200 000012333344444444567888877766778888888
Q ss_pred CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeC--ccccEEEEEEeCCCC-
Q 007306 343 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKG--HQNRITCLAYSLSLN- 417 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~--~~~~v~~~~~~~~~~- 417 (608)
..|.+|+++....+--..--.-++......-=+ +|+.|.--..|.+.-.... ..+..+.. ..-.+.++.|--||.
T Consensus 1116 qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~ 1195 (1366)
T KOG1896|consen 1116 QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSN 1195 (1366)
T ss_pred cEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCe
Confidence 899999995432221111011111111111122 5556655556655544332 11221211 233567777776665
Q ss_pred -EEEEEcCCCcEEEEECCC
Q 007306 418 -VLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 418 -~l~s~~~d~~i~vwd~~~ 435 (608)
.++++..|++|++|-..-
T Consensus 1196 L~flvsDa~rNi~vy~Y~P 1214 (1366)
T KOG1896|consen 1196 LSFLVSDADRNIHVYMYAP 1214 (1366)
T ss_pred eEEEEEcCCCcEEEEEeCC
Confidence 377788899999886543
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.40 E-value=18 Score=39.03 Aligned_cols=134 Identities=9% Similarity=0.040 Sum_probs=70.9
Q ss_pred EEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC-----cEEEEECCCCc
Q 007306 368 YFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWK 437 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~ 437 (608)
-+.|..|. +.+++... +.+++|... |..-..-....+.-..+.|-|+|..+++-..|| .|+++.-+.-+
T Consensus 206 ~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr 284 (1243)
T COG5290 206 IIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR 284 (1243)
T ss_pred EEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc
Confidence 45565555 55554432 245666522 322221122223334578999999999987665 35555443311
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 511 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 511 (608)
. ....++ . +.. ..+..++|+-....++++..+.+++|-..+....-.... ....+.-+.|+|...
T Consensus 285 H-Gef~lr-~--~~d---Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~--~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 285 H-GEFDLR-V--GCD---EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVER--QIPGISYVKWHPEEK 349 (1243)
T ss_pred c-CCcccc-C--Cch---hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEee--cCCCcceeeeccccC
Confidence 0 001111 1 111 345567777777777777888999998776543222211 134455677777543
No 480
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.40 E-value=29 Score=35.43 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=64.6
Q ss_pred CEEEEEeCCcEEEEEcCC-CceeeEec----CCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 335 SHLFSASGGKISIFSLET-FQTLATFA----NPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 335 ~~l~s~~d~~i~vwd~~~-~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
+.|+..++..|.-.|..- |..+.... .......|..-...|++++++..|.|++||.-.-+....+.+....|..
T Consensus 529 qtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~ 608 (776)
T COG5167 529 QTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKH 608 (776)
T ss_pred ceEEeecccceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceee
Confidence 345555566555555532 32222221 1122334444445559999999999999997655555566777788999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCC
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~ 435 (608)
+..+.+|+++++.+ ..++-+-|+.-
T Consensus 609 idvta~Gk~ilaTC-k~yllL~d~~i 633 (776)
T COG5167 609 IDVTANGKHILATC-KNYLLLTDVPI 633 (776)
T ss_pred eEeecCCcEEEEee-cceEEEEeccc
Confidence 99999999987766 45677777754
No 481
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.29 E-value=7.6 Score=36.11 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=74.6
Q ss_pred EEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeC-C--CcEEEEeCCC----CceEE---EeeCccccEEEEEEeC
Q 007306 346 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFD-D--SSILVHCPCT----KKTKA---KLKGHQNRITCLAYSL 414 (608)
Q Consensus 346 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d--~~i~vwd~~~----~~~~~---~~~~~~~~v~~~~~~~ 414 (608)
.+||+.+++....-.....-..+-.+.+|| ++.+|+. + ..+++++..+ ..... .+. ....-.+...-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceECC
Confidence 478888765532211222222334577899 8887775 2 3688888654 11110 011 112223445567
Q ss_pred CCCEEEEEcCCCc-EEEEECCCCc--eecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeee
Q 007306 415 SLNVLVSSGADAQ-LCVWDAVGWK--KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 415 ~~~~l~s~~~d~~-i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~ 491 (608)
||+.|+.|+.+.. ..+|.-.... ......+........ ...---+...|+|+.++.+..+ -.|||..+.+.++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~--~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLP--NNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCc--cccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEee
Confidence 9999999887743 3445432210 000000110000000 0122356778999999887554 44779888777666
Q ss_pred ec
Q 007306 492 LV 493 (608)
Q Consensus 492 ~~ 493 (608)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 64
No 482
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.59 E-value=22 Score=32.13 Aligned_cols=56 Identities=32% Similarity=0.422 Sum_probs=38.3
Q ss_pred ecCCC-CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC
Q 007306 218 SLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ 279 (608)
Q Consensus 218 ~s~dg-~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~ 279 (608)
+.+.| +.|..+...+.|.+|++.....+..+ +++ --+.|..+.++..|+||+|-=.
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~---~F~---Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQEECPLLC---TFS---TVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEcccCCCceeE---EEc---chhheeEEEeccccceEEEEEe
Confidence 55556 56655566788999999832111111 232 2589999999999999999754
No 483
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.47 E-value=5.3 Score=35.16 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.2
Q ss_pred cEEEEEecCC-----CCEEEEEeCCCcEEEEeCCCC-cccccc
Q 007306 553 PLVIAAHPLE-----PNRIALGLTNGRVHVIEPLES-EVEWGK 589 (608)
Q Consensus 553 ~~~v~~sp~d-----~~~las~s~Dg~v~iW~~~~~-~~~~~~ 589 (608)
+.+++|||.+ +.+||+.+.+|.|.||..... ...|..
T Consensus 88 vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~ 130 (173)
T PF12657_consen 88 VVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNR 130 (173)
T ss_pred EEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEee
Confidence 5589999932 358999999999999998865 556654
No 484
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.88 E-value=36 Score=33.14 Aligned_cols=234 Identities=12% Similarity=-0.024 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCc--E
Q 007306 270 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGK--I 345 (608)
Q Consensus 270 ~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~--i 345 (608)
++++|+.|+.+|...+. .... .+...+. .+...|.++... -+.|++-+++. +
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~-------------------~~~~~kl----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L 67 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQ-------------------PGTLEKL----IGRRSVTQIWVLEENNVLLMISGKKPQL 67 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccC-------------------CCCeEEe----cCcCceEEEEEEhhhCEEEEEeCCcceE
Confidence 44689999998877654 2211 0112221 366789999888 56666666554 9
Q ss_pred EEEEcCCCce---------------eeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC----ceEEEe---e
Q 007306 346 SIFSLETFQT---------------LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKL---K 401 (608)
Q Consensus 346 ~vwd~~~~~~---------------~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~----~~~~~~---~ 401 (608)
+++++..-.. ....-++..+...+++.... .++++....+|.++..... ...+.+ .
T Consensus 68 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~ 147 (302)
T smart00036 68 YSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFP 147 (302)
T ss_pred EEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhccccccc
Confidence 9999843221 01111333333333333322 4445555667777643221 111110 0
Q ss_pred C-ccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCC--CceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCC
Q 007306 402 G-HQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVG--WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEG 476 (608)
Q Consensus 402 ~-~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~ 476 (608)
. ...++..+..+++ ...++.|+..+...++++.. ... ....+........ ..++ ++..-+++ .++.+.|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~-~d~sl~~~~~~~~--~~p~-~i~~l~~~-e~Llc~~~ 222 (302)
T smart00036 148 LISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSK-EDLSLPFLSEETS--LKPI-SVVQVPRD-EFLLCYDE 222 (302)
T ss_pred CCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccc-ccccccccccccc--cCce-EEEEECCC-eEEEEECc
Confidence 0 1123333333333 45677777653344555532 110 0011110000000 0123 33333344 44445555
Q ss_pred cEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 477 QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 477 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
...+.|.. | +..+.... .-.....++++. ..+|+.-+ ++.|.|+++.++++++.+.
T Consensus 223 ~~v~Vn~~-G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 223 FGVFVNLY-GKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred EEEEEeCC-CCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 56666663 4 22221111 124556677766 45676665 4559999999999888875
No 485
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=85.66 E-value=35 Score=32.85 Aligned_cols=107 Identities=10% Similarity=-0.075 Sum_probs=64.4
Q ss_pred EEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC
Q 007306 388 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 467 (608)
Q Consensus 388 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 467 (608)
++|+.+++.+.. +. .-..+..|+ +|++.++-+..|.+..+|.++++.. .+- ... +....+.|. |
T Consensus 189 vidv~s~evl~~--GL-smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e---~Va-~vp------G~~rGL~f~--G 252 (335)
T TIGR03032 189 VIDIPSGEVVAS--GL-SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQ---PVA-FLP------GFTRGLAFA--G 252 (335)
T ss_pred EEEeCCCCEEEc--Cc-cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEE---EEE-ECC------CCCccccee--C
Confidence 356666655421 10 111223344 6788888888999999998875532 222 111 456678888 7
Q ss_pred CEEEEEe-----CC----------------cEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 007306 468 IHLLSIH-----EG----------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 510 (608)
Q Consensus 468 ~~l~~~~-----d~----------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 510 (608)
.++++|. ++ .|.+.|+++|..+..+...+.-..+..+++-|.-
T Consensus 253 ~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 253 DFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred CEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 7777641 11 2677788888777766654445566677666653
No 486
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.24 E-value=2.4 Score=37.29 Aligned_cols=80 Identities=26% Similarity=0.283 Sum_probs=60.0
Q ss_pred CcceecchhhhhHHHHHHHHHhhhcHHHHHH-HHHhhcCccccHHHHHHHHhcCCHHHHHHHHhhcccCCCCCcceeehh
Q 007306 4 SKMCIDKDTYTHLITLIMKFLEEENFKESLQ-ALEQESKIFFNVHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFF 82 (608)
Q Consensus 4 ~~~~~~~~~~~~ivrli~q~L~~~g~~~s~~-~L~~Es~~~~~~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~ 82 (608)
+.|-||..|. +.|.|-|+|.|...-++ .|++|-.-++++..+-..+.+ .=..++-|+....-.++..
T Consensus 123 aDGhIDe~ER----a~I~~~l~esG~d~e~~~~le~El~~PlD~~~ia~~a~~-ee~a~ElY~ASrl~id~d~------- 190 (225)
T COG2979 123 ADGHIDEKER----ARIMQKLQESGVDPEAQAFLEQELEQPLDPDEIAAAARN-EEQALELYLASRLAIDDDS------- 190 (225)
T ss_pred hcCCcCHHHH----HHHHHHHHHcCCCHHHHHHHHHHHhCCCCHHHHHHHhcC-HHHHHHHHHHHHHhcCchh-------
Confidence 5788999999 89999999999986555 569999999999999998887 4444555776654445544
Q ss_pred HHhhhHHHHHHhhc
Q 007306 83 ELRKHKYCEALCRQ 96 (608)
Q Consensus 83 ~i~~~~~le~l~~~ 96 (608)
-.|.-||+.|...
T Consensus 191 -r~Er~YL~~La~~ 203 (225)
T COG2979 191 -RMERSYLNALAGA 203 (225)
T ss_pred -HHHHHHHHHHHHH
Confidence 3556666666654
No 487
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=85.16 E-value=3.4 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=24.9
Q ss_pred CCCCEEEEE--eCCcEEEEECCCCceeeeecCC
Q 007306 465 PDQIHLLSI--HEGQIDVYEAPTLNHTSQLVPD 495 (608)
Q Consensus 465 p~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~ 495 (608)
|++++++++ .+++|.++|..+++.+..+..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 678877774 5789999999999888887653
No 488
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.07 E-value=0.16 Score=50.49 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=91.2
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
-.......|-|.+.-++.++.+..+..||-..... ... ...+....++|. +..
T Consensus 34 lv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---------------------le~----n~tg~aldm~wDkegdv 88 (615)
T KOG2247|consen 34 LVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---------------------LEL----NPTGKALDMAWDKEGDV 88 (615)
T ss_pred ccccceeeEecCCCceehhhhhhHHHhhhhhccee---------------------ccc----CCchhHhhhhhccccch
Confidence 33444456777776788888888888776433321 110 233445566777 444
Q ss_pred E-EEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe
Q 007306 337 L-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 337 l-~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 413 (608)
+ +.+. .+.+.+||+.+....+.-.+....-.-+.|++.. .++.|...|.+.+++..+.+.+-..-.|..++.+++|.
T Consensus 89 lavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 89 LAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred hhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 4 3444 7999999997532211111111112236788888 88999999999999988776665554489999999999
Q ss_pred CCCCEEEEEcCCCcE
Q 007306 414 LSLNVLVSSGADAQL 428 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i 428 (608)
+.+. .+.++.|..+
T Consensus 169 lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 169 LEDY-VILCDCDNTL 182 (615)
T ss_pred ccce-eeecCcHHHH
Confidence 9774 4445545443
No 489
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.00 E-value=5.5 Score=35.08 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=25.3
Q ss_pred ccEEEEEEeCCC------CEEEEEcCCCcEEEEECCC
Q 007306 405 NRITCLAYSLSL------NVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 405 ~~v~~~~~~~~~------~~l~s~~~d~~i~vwd~~~ 435 (608)
..+.+++|||.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999954 4688889999999997664
No 490
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.88 E-value=56 Score=33.67 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=47.5
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEEEeC---------CCCceEE---Ee-------e-CccccEEEEEEeCCC---CEEE
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILVHCP---------CTKKTKA---KL-------K-GHQNRITCLAYSLSL---NVLV 420 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~vwd~---------~~~~~~~---~~-------~-~~~~~v~~~~~~~~~---~~l~ 420 (608)
.|..+..++.| .++-.+.+|.+.++=. ..|+..- ++ . ...-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 45677889999 7777787886655421 2232211 11 1 112235678899965 6677
Q ss_pred EEcCCCcEEEEECCCCc
Q 007306 421 SSGADAQLCVWDAVGWK 437 (608)
Q Consensus 421 s~~~d~~i~vwd~~~~~ 437 (608)
.-+.|..|++||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 78889999999998744
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.78 E-value=71 Score=34.77 Aligned_cols=100 Identities=11% Similarity=0.165 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCEEEE-EeCC-----cEEEEECCCCceeeee--cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 457 IVNHIQFHPDQIHLLS-IHEG-----QIDVYEAPTLNHTSQL--VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~-~~d~-----~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
.-..+.|-|.|..+++ +.|| .+..+.-. |-....+ .. +-...+...+|.-....++.+ ..+.|.+|-..
T Consensus 248 ~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttk 324 (1243)
T COG5290 248 MEHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTK 324 (1243)
T ss_pred chhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEcc
Confidence 3345899999999998 5444 36666542 2211111 11 113445666776555544443 46789999887
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
+...--.... + -..+. -+.|+|...+.|...
T Consensus 325 NyhWYLK~e~--~------ip~~s--~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 325 NYHWYLKVER--Q------IPGIS--YVKWHPEEKNTLLFR 355 (1243)
T ss_pred ceEEEEEEee--c------CCCcc--eeeeccccCcEEEEe
Confidence 7653322221 1 11122 578998655554443
No 492
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=45 Score=31.67 Aligned_cols=265 Identities=10% Similarity=0.043 Sum_probs=136.1
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccc
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
+++...+..+.-++|.|+.+...+.+.-.+.+ .+--.+ +.-.|++...+.-|.-..+.|+.+...
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-----~gyayg--v~vsGn~aYVadlddgfLivdvsdpss-------- 160 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT-----DGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSS-------- 160 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccC-----CceEEE--EEecCCEEEEeeccCcEEEEECCCCCC--------
Confidence 56777778888899999987655555554321 123333 334588888877555555666654432
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCce---eeEecCCCCCeEEEEEcCCC-e
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQT---LATFANPPPIATYFILLPQD-L 376 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~ 376 (608)
..+....- .....-+.++.||++-..+. |+-+.+-|+..... +.... ....+.++..+++- +
T Consensus 161 ----------P~lagrya--~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y 227 (370)
T COG5276 161 ----------PQLAGRYA--LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAY 227 (370)
T ss_pred ----------ceeeeeec--cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeE
Confidence 22221111 13344467888888877777 99999999875432 22222 23367777777776 5
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEeeC-ccccEEEE-EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCC
Q 007306 377 FAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCL-AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 377 l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~-~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 454 (608)
++.. +--+.+-|..+.+....+-. ....+.++ .+.-.+++...+..+.-+.+-|+.+... . +..++-+.
T Consensus 228 ~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~s------p-fl~ss~~t 298 (370)
T COG5276 228 LVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPS------P-FLSSSLDT 298 (370)
T ss_pred EEEc--ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCC------C-chhccccC
Confidence 5543 33466667665543333321 11222222 2333466666666677777777765221 0 11111000
Q ss_pred cc-ceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 455 TT-IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 455 ~~-~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
.+ .-..+..+ +.++.....+...+-+...-+...... +....+.+.+.+-+.+.+.+...++.+.||+.
T Consensus 299 ~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~--g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 299 AGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRP--GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred CCccccceEEe--cCeeEeccCCceEEEeCCChhhccccc--CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 00 11222222 223333211233333332221111111 01223344455555667888888888888875
No 493
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.40 E-value=2.5 Score=24.91 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=22.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcccccc
Q 007306 564 NRIALGLTNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~~~~~~~ 589 (608)
..+..++.+|.+...|..+|+..|..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778889999999999999999964
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.18 E-value=25 Score=32.76 Aligned_cols=145 Identities=11% Similarity=0.104 Sum_probs=76.0
Q ss_pred EEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC-C--CcEEEEECCCCceecc-cce-eeeeccCCCCccceEE
Q 007306 386 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D--AQLCVWDAVGWKKLCS-KFL-HSFQTGLVPETTIVNH 460 (608)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d--~~i~vwd~~~~~~~~~-~~~-~~~~~~~~~~~~~v~~ 460 (608)
-.+||+.+++....-........+-.+-+||+++.+|+. + ..+++++.......+. ... ..+..+ -.-.+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~-----RWYpT 122 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSG-----RWYPT 122 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCC-----Ccccc
Confidence 357888887553221112222233357789999998875 2 4578887543110000 000 001111 23446
Q ss_pred EEEcCCCCEEEEE-eC-CcEEEEECCC--Cceee-eecC----CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 461 IQFHPDQIHLLSI-HE-GQIDVYEAPT--LNHTS-QLVP----DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 461 v~~sp~~~~l~~~-~d-~~i~iwd~~~--~~~~~-~~~~----~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
...-|||+.|++| .. ....+|.-.. ..... .+.. ......--.+...|||+.++.+..+. .|||..+.+
T Consensus 123 ~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~ 200 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNT 200 (243)
T ss_pred ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCe
Confidence 6777899999985 33 3455665421 11111 1110 00012222455679999999887654 466888887
Q ss_pred eeEEEe
Q 007306 532 LRCQIN 537 (608)
Q Consensus 532 ~~~~~~ 537 (608)
.+..+.
T Consensus 201 v~~~lP 206 (243)
T PF07250_consen 201 VVRTLP 206 (243)
T ss_pred EEeeCC
Confidence 655554
No 495
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=80.47 E-value=67 Score=32.22 Aligned_cols=78 Identities=15% Similarity=0.043 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCceeeEecCC----CCCeEEEEEcCCC-e-EEEE------eCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 342 GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-L-FAFG------FDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~-l~~~------~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
-+.|-+|+..+++....+... .+...-+.|.+.. + +.++ ..++.|++||.+... ++
T Consensus 244 ~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n------------~~ 311 (465)
T KOG2714|consen 244 VGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN------------TS 311 (465)
T ss_pred cccccccchhhhceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC------------cc
Confidence 688999999887433332211 1222345565544 3 3332 345678888877654 12
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCC
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~ 435 (608)
..|. .++.++..+.+++-+...
T Consensus 312 ~~W~----~i~~gt~~~~vrv~~~~~ 333 (465)
T KOG2714|consen 312 GNWI----EIAYGTSSGEVRVIDQHP 333 (465)
T ss_pred ceEE----EecCCccccceEeeeccc
Confidence 3343 355566677777777654
No 496
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.43 E-value=82 Score=36.38 Aligned_cols=69 Identities=16% Similarity=0.197 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCce
Q 007306 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 532 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~ 532 (608)
++.+..+............+.+-+|+.........+...++ .+++++..++++..||.+..||...++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ-------LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc-------cCccCCceEEEEEecCCEEeeecCCCce
Confidence 44455444444555555566677777654444444433211 1188999999999999999999999866
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=79.37 E-value=1.2e+02 Score=34.39 Aligned_cols=178 Identities=13% Similarity=0.022 Sum_probs=98.0
Q ss_pred cEEEEeCCCCceEEEeeCcc----ccEEEEEEeCCCC--EEEEEc-----------CCCcEEEEECCCCceecccceeee
Q 007306 385 SILVHCPCTKKTKAKLKGHQ----NRITCLAYSLSLN--VLVSSG-----------ADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 385 ~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~--~l~s~~-----------~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
.|+++|..+++.+..+.-.. ..+.++.|+.... +++++. .+|.++.|++-... ..+. +
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g----~~le-l 928 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG----DKLE-L 928 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecC----ceee-e
Confidence 47788887777665554221 2355566665333 233332 23456666653311 1111 1
Q ss_pred eccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE--E
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV--F 525 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i--w 525 (608)
. .+..-.+.+ .++.|-..++++|....+++||+-..++++......-...|+++.+. +..++.|.....|.+ |
T Consensus 929 l-h~T~~~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y 1003 (1205)
T KOG1898|consen 929 L-HKTEIPGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRY 1003 (1205)
T ss_pred e-eccCCCccc--eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEE
Confidence 1 111000233 45667777999999999999999887777665443224556666654 667888776655554 5
Q ss_pred eCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 526 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 526 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
+.+..+++.... . .-+-+++++.+- |...+|.+..=|.+.+-.+...
T Consensus 1004 ~~~~n~l~~fad-D--------~~pR~Vt~~~~l--D~~tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1004 RREDNQLIVFAD-D--------PVPRHVTALELL--DYDTVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred ecCCCeEEEEeC-C--------CccceeeEEEEe--cCCceeeccccCcEEEEECCCc
Confidence 555554433321 1 122334455443 4567787777677776665443
No 498
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.49 E-value=77 Score=31.78 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=107.0
Q ss_pred eCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE------eCCE--EEEE
Q 007306 269 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------RGSH--LFSA 340 (608)
Q Consensus 269 p~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------s~~~--l~s~ 340 (608)
|...+++...+++-+.+||++..... ... .+..+.+.. .|+. |+.+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq-------------~~~-------------~Gr~NNVDvrygf~l~g~~vDlava 119 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQ-------------SLP-------------VGRPNNVDVRYGFPLNGKTVDLAVA 119 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEE-------------EE--------------SS-EEEEEEEEEEEETTEEEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEE-------------eec-------------CCCcceeeeecceecCCceEEEEEE
Confidence 56667888888888988887665431 001 122333222 2332 4555
Q ss_pred e--C---CcEEEEEcC--CCceeeEecCC-------CCCeEEEEE--cC-CC--eEEEEeCCCcEEEEeCC---CC----
Q 007306 341 S--G---GKISIFSLE--TFQTLATFANP-------PPIATYFIL--LP-QD--LFAFGFDDSSILVHCPC---TK---- 394 (608)
Q Consensus 341 ~--d---~~i~vwd~~--~~~~~~~~~~~-------~~~v~~~~~--~~-~~--~l~~~~~d~~i~vwd~~---~~---- 394 (608)
+ + .+|++|.+. ++. +..+... ...+..+|+ ++ +| +.++...+|.+..|.+. .+
T Consensus 120 s~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~ 198 (381)
T PF02333_consen 120 SDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA 198 (381)
T ss_dssp EE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE
T ss_pred ecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee
Confidence 5 2 369999775 333 3333211 123555555 44 45 77778889988877664 33
Q ss_pred ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc--CCC-CEEE
Q 007306 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQ-IHLL 471 (608)
Q Consensus 395 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~~-~~l~ 471 (608)
+.++.|.. .+.+..|+.......|..+-.+.-|+-|+.+.........+......+- ...|-.+++- +++ .||+
T Consensus 199 ~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l--~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 199 TLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGL--VADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp EEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB---S-EEEEEEEE-CCC-EEEE
T ss_pred EEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccccc--ccCccceEEEecCCCCeEEE
Confidence 35666764 4478889999888899999999999989887433222222321111111 1456667664 344 4666
Q ss_pred E-E-eCCcEEEEECCC-Cceeeee
Q 007306 472 S-I-HEGQIDVYEAPT-LNHTSQL 492 (608)
Q Consensus 472 ~-~-~d~~i~iwd~~~-~~~~~~~ 492 (608)
+ + .+++..+|+... ...+..|
T Consensus 276 vSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEcCCCCeEEEEecCCCCcccceE
Confidence 6 4 678899999864 2334444
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.78 E-value=6.2 Score=24.36 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeeCCCEEEEEeC-C--CcEEEE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQ-T--ATHKLW 286 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~-d--g~i~iw 286 (608)
....-...+|||||++|+-++. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 500
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.53 E-value=16 Score=27.85 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=27.7
Q ss_pred cCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCc
Q 007306 423 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQ 477 (608)
Q Consensus 423 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~ 477 (608)
..+|.+..||..+++ ...+..+- ...+.|+++||+.+++++..+.
T Consensus 34 ~~~GRll~ydp~t~~------~~vl~~~L----~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKE------TTVLLDGL----YFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp ---EEEEEEETTTTE------EEEEEEEE----SSEEEEEE-TTSSEEEEEEGGG
T ss_pred CCCcCEEEEECCCCe------EEEehhCC----CccCeEEEcCCCCEEEEEeccC
Confidence 446788889998843 22122222 2567899999999999875443
Done!