Query 007306
Match_columns 608
No_of_seqs 762 out of 4220
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 22:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.4E-50 4.9E-55 415.3 41.2 279 257-580 106-409 (410)
2 1nr0_A Actin interacting prote 100.0 1.8E-45 6.3E-50 397.3 46.1 350 215-584 64-569 (611)
3 1nr0_A Actin interacting prote 100.0 1.4E-43 4.7E-48 382.6 49.2 341 217-582 25-522 (611)
4 3ow8_A WD repeat-containing pr 100.0 2.9E-43 9.9E-48 348.4 40.5 282 256-580 29-319 (321)
5 1got_B GT-beta; complex (GTP-b 100.0 1E-42 3.4E-47 348.0 43.6 281 256-579 52-340 (340)
6 4g56_B MGC81050 protein; prote 100.0 4.1E-43 1.4E-47 352.8 36.4 314 218-584 13-345 (357)
7 2ymu_A WD-40 repeat protein; u 100.0 7.8E-42 2.7E-46 367.4 48.9 328 214-579 225-577 (577)
8 4gqb_B Methylosome protein 50; 100.0 4.8E-43 1.6E-47 349.5 34.6 288 258-584 29-333 (344)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.3E-42 1.8E-46 343.3 38.7 299 257-586 13-339 (345)
10 2ynn_A Coatomer subunit beta'; 100.0 1.1E-41 3.7E-46 334.8 40.1 281 258-582 12-302 (304)
11 2pbi_B Guanine nucleotide-bind 100.0 2.5E-41 8.6E-46 339.5 41.5 280 257-579 62-354 (354)
12 1got_B GT-beta; complex (GTP-b 100.0 3.4E-41 1.1E-45 336.9 42.1 276 215-526 60-340 (340)
13 1vyh_C Platelet-activating fac 100.0 1.1E-41 3.9E-46 349.2 39.1 383 6-528 1-410 (410)
14 3frx_A Guanine nucleotide-bind 100.0 2.4E-41 8.3E-46 334.6 39.6 293 256-583 14-318 (319)
15 3ow8_A WD repeat-containing pr 100.0 3.9E-41 1.3E-45 333.1 41.0 274 215-528 37-320 (321)
16 4ery_A WD repeat-containing pr 100.0 3.4E-40 1.2E-44 325.7 43.3 284 256-581 20-311 (312)
17 2ymu_A WD-40 repeat protein; u 100.0 6.5E-40 2.2E-44 352.4 48.3 333 214-585 184-541 (577)
18 3iz6_a 40S ribosomal protein R 100.0 1.3E-41 4.6E-46 345.2 32.9 291 256-584 63-377 (380)
19 1gxr_A ESG1, transducin-like e 100.0 5.8E-40 2E-44 327.2 41.6 315 216-581 15-336 (337)
20 1r5m_A SIR4-interacting protei 100.0 4.9E-40 1.7E-44 338.8 42.3 322 214-581 49-424 (425)
21 3frx_A Guanine nucleotide-bind 100.0 7E-40 2.4E-44 324.2 40.4 280 215-530 22-318 (319)
22 3iz6_a 40S ribosomal protein R 100.0 3.7E-41 1.3E-45 342.0 31.9 291 215-531 71-377 (380)
23 2pbi_B Guanine nucleotide-bind 100.0 7E-40 2.4E-44 328.9 40.5 278 215-526 69-354 (354)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 9E-40 3.1E-44 327.1 40.9 294 214-535 20-341 (345)
25 4gqb_B Methylosome protein 50; 100.0 4.8E-40 1.6E-44 327.8 37.0 280 215-531 35-333 (344)
26 4g56_B MGC81050 protein; prote 100.0 6.5E-40 2.2E-44 329.4 37.3 282 215-531 47-345 (357)
27 2pm9_A Protein WEB1, protein t 100.0 3.3E-41 1.1E-45 346.9 28.3 330 217-583 19-415 (416)
28 2hes_X YDR267CP; beta-propelle 100.0 1.6E-39 5.4E-44 323.2 39.1 290 257-582 12-328 (330)
29 2xzm_R RACK1; ribosome, transl 100.0 2.1E-39 7.3E-44 324.3 40.1 293 257-584 19-342 (343)
30 2oaj_A Protein SNI1; WD40 repe 100.0 6.7E-39 2.3E-43 358.5 46.2 353 210-584 17-666 (902)
31 1erj_A Transcriptional repress 100.0 1.3E-38 4.5E-43 324.7 42.3 304 258-583 63-390 (393)
32 3vl1_A 26S proteasome regulato 100.0 2.9E-39 9.9E-44 333.0 35.9 321 217-582 63-419 (420)
33 2xzm_R RACK1; ribosome, transl 100.0 4.8E-38 1.6E-42 314.5 42.0 277 219-531 35-342 (343)
34 4aow_A Guanine nucleotide-bind 100.0 6.2E-38 2.1E-42 313.2 42.7 296 252-584 33-339 (340)
35 1pgu_A Actin interacting prote 100.0 8.9E-38 3E-42 338.3 46.0 342 216-582 24-614 (615)
36 2ynn_A Coatomer subunit beta'; 100.0 6.3E-38 2.2E-42 307.9 40.4 274 214-529 17-302 (304)
37 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.6E-37 8.8E-42 321.0 46.3 320 208-582 115-442 (445)
38 2hes_X YDR267CP; beta-propelle 100.0 6.9E-38 2.4E-42 311.4 40.0 288 216-529 20-328 (330)
39 4aow_A Guanine nucleotide-bind 100.0 2.6E-37 8.8E-42 308.6 42.6 282 215-531 43-339 (340)
40 1erj_A Transcriptional repress 100.0 2.3E-37 7.8E-42 315.6 40.2 282 213-530 67-390 (393)
41 3dm0_A Maltose-binding peripla 100.0 1.6E-37 5.5E-42 340.8 41.3 293 257-581 380-692 (694)
42 4ery_A WD repeat-containing pr 100.0 1.1E-36 3.7E-41 300.5 42.9 277 214-528 27-311 (312)
43 3sfz_A APAF-1, apoptotic pepti 100.0 4.2E-37 1.4E-41 360.0 45.1 324 213-586 618-1038(1249)
44 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-37 9.5E-42 361.5 40.8 344 215-589 704-1165(1249)
45 3zwl_B Eukaryotic translation 100.0 1.9E-36 6.7E-41 305.6 41.3 290 248-585 23-349 (369)
46 3gre_A Serine/threonine-protei 100.0 7.5E-38 2.6E-42 324.2 31.2 320 217-579 34-437 (437)
47 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-38 6.2E-43 332.3 25.8 326 218-582 169-517 (524)
48 3v7d_B Cell division control p 100.0 5.9E-36 2E-40 312.5 43.6 305 217-580 127-461 (464)
49 3dm0_A Maltose-binding peripla 100.0 3E-36 1E-40 330.6 42.6 280 215-529 387-693 (694)
50 1sq9_A Antiviral protein SKI8; 100.0 1.1E-36 3.8E-41 311.1 35.6 296 256-584 13-397 (397)
51 1gxr_A ESG1, transducin-like e 100.0 1.9E-35 6.6E-40 294.4 43.0 278 212-527 53-335 (337)
52 4e54_B DNA damage-binding prot 100.0 3.8E-37 1.3E-41 318.4 31.4 290 258-586 118-434 (435)
53 4h5i_A Guanine nucleotide-exch 100.0 4.4E-36 1.5E-40 302.4 36.9 293 259-583 14-344 (365)
54 1k8k_C P40, ARP2/3 complex 41 100.0 2.4E-36 8.1E-41 305.7 34.8 298 258-586 7-365 (372)
55 3ei3_B DNA damage-binding prot 100.0 3.4E-36 1.2E-40 306.0 36.0 285 257-582 71-382 (383)
56 3k26_A Polycomb protein EED; W 100.0 2E-36 7E-41 305.2 32.4 293 256-582 15-366 (366)
57 1r5m_A SIR4-interacting protei 100.0 2.8E-36 9.5E-41 310.7 34.0 291 257-584 43-363 (425)
58 3i2n_A WD repeat-containing pr 100.0 2.8E-36 9.5E-41 303.2 32.3 291 258-584 17-355 (357)
59 2oaj_A Protein SNI1; WD40 repe 100.0 3.6E-35 1.2E-39 328.4 44.6 352 212-586 60-736 (902)
60 4a11_B DNA excision repair pro 100.0 2.6E-35 8.8E-40 301.8 39.9 325 215-581 48-404 (408)
61 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-35 1.2E-39 329.0 44.2 325 214-582 17-386 (814)
62 3odt_A Protein DOA1; ubiquitin 100.0 6.2E-35 2.1E-39 287.6 40.8 277 256-586 15-300 (313)
63 3zwl_B Eukaryotic translation 100.0 4.5E-35 1.5E-39 295.6 39.8 281 213-536 35-353 (369)
64 4aez_A CDC20, WD repeat-contai 100.0 2.1E-35 7.3E-40 302.0 37.1 287 258-588 90-386 (401)
65 2pm9_A Protein WEB1, protein t 100.0 1.7E-36 6E-41 311.7 28.9 291 259-585 12-340 (416)
66 3vl1_A 26S proteasome regulato 100.0 1.2E-35 4.2E-40 305.8 35.2 286 260-584 57-367 (420)
67 3dwl_C Actin-related protein 2 100.0 5.9E-37 2E-41 310.9 24.9 242 258-528 10-280 (377)
68 4aez_A CDC20, WD repeat-contai 100.0 3.9E-35 1.4E-39 300.1 38.5 280 218-536 99-387 (401)
69 3ei3_B DNA damage-binding prot 100.0 3.8E-35 1.3E-39 298.3 36.4 286 214-529 77-382 (383)
70 4e54_B DNA damage-binding prot 100.0 3.3E-36 1.1E-40 311.4 28.6 288 214-533 123-434 (435)
71 4gga_A P55CDC, cell division c 100.0 1.4E-34 4.9E-39 297.8 40.2 279 216-536 111-402 (420)
72 1k8k_C P40, ARP2/3 complex 41 100.0 4.5E-35 1.6E-39 296.2 35.8 280 215-531 13-363 (372)
73 4a11_B DNA excision repair pro 100.0 3.5E-35 1.2E-39 300.9 35.4 325 230-586 21-369 (408)
74 3odt_A Protein DOA1; ubiquitin 100.0 1.9E-34 6.5E-39 284.2 38.4 277 216-537 24-304 (313)
75 3k26_A Polycomb protein EED; W 100.0 3.6E-35 1.2E-39 296.1 32.8 285 214-529 22-366 (366)
76 3dw8_B Serine/threonine-protei 100.0 7.6E-35 2.6E-39 302.5 35.3 304 258-581 27-445 (447)
77 4gga_A P55CDC, cell division c 100.0 5.5E-34 1.9E-38 293.4 40.4 283 260-585 106-398 (420)
78 2pm7_B Protein transport prote 100.0 2E-34 7E-39 281.9 34.7 248 256-529 6-285 (297)
79 3v7d_B Cell division control p 100.0 1.4E-33 4.8E-38 294.5 43.1 278 258-588 120-427 (464)
80 1sq9_A Antiviral protein SKI8; 100.0 3.9E-34 1.3E-38 292.2 36.9 284 215-531 21-397 (397)
81 3i2n_A WD repeat-containing pr 100.0 1.2E-34 4E-39 291.4 32.4 284 214-532 22-356 (357)
82 4ggc_A P55CDC, cell division c 100.0 1.6E-33 5.6E-38 278.2 39.8 274 216-531 31-317 (318)
83 4h5i_A Guanine nucleotide-exch 100.0 2.1E-34 7.2E-39 290.1 33.4 289 216-530 20-344 (365)
84 4ggc_A P55CDC, cell division c 100.0 2.2E-33 7.4E-38 277.4 40.0 281 261-585 27-318 (318)
85 3mkq_A Coatomer beta'-subunit; 100.0 4.7E-34 1.6E-38 319.7 39.0 284 258-585 12-305 (814)
86 3dwl_C Actin-related protein 2 100.0 2.2E-35 7.5E-40 299.4 25.5 281 216-527 17-377 (377)
87 2pm7_B Protein transport prote 100.0 3.9E-34 1.3E-38 279.9 33.3 249 322-588 7-290 (297)
88 3gre_A Serine/threonine-protei 100.0 2.8E-34 9.5E-39 297.4 33.8 293 212-526 65-437 (437)
89 1yfq_A Cell cycle arrest prote 100.0 6.9E-34 2.4E-38 284.1 34.2 279 257-579 9-321 (342)
90 1p22_A F-BOX/WD-repeat protein 100.0 9.6E-34 3.3E-38 293.1 35.6 277 258-590 132-422 (435)
91 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.1E-32 3.6E-37 286.2 41.8 279 257-587 116-396 (445)
92 3bg1_A Protein SEC13 homolog; 100.0 3.1E-34 1.1E-38 283.2 26.8 249 322-590 11-300 (316)
93 2j04_A TAU60, YPL007P, hypothe 100.0 5E-34 1.7E-38 290.6 28.9 292 216-571 21-350 (588)
94 3bg1_A Protein SEC13 homolog; 100.0 5.2E-34 1.8E-38 281.5 26.2 244 257-529 11-293 (316)
95 1p22_A F-BOX/WD-repeat protein 100.0 8.9E-33 3E-37 285.8 34.2 269 217-536 138-421 (435)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 3.1E-33 1.1E-37 286.1 30.0 288 217-533 41-346 (402)
97 3dw8_B Serine/threonine-protei 100.0 1.1E-32 3.9E-37 286.0 32.0 304 213-528 31-445 (447)
98 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-33 4.7E-38 295.4 24.8 281 213-530 210-518 (524)
99 1yfq_A Cell cycle arrest prote 100.0 5E-32 1.7E-36 270.5 34.7 277 214-526 15-321 (342)
100 3jrp_A Fusion protein of prote 100.0 4.1E-32 1.4E-36 275.0 34.2 249 257-531 9-289 (379)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-32 4.7E-37 281.3 29.9 287 261-585 36-345 (402)
102 3mmy_A MRNA export factor; mRN 100.0 4.4E-32 1.5E-36 273.5 32.8 282 256-582 36-346 (368)
103 1pgu_A Actin interacting prote 100.0 2.2E-31 7.4E-36 288.2 39.5 286 257-586 16-332 (615)
104 3f3f_A Nucleoporin SEH1; struc 100.0 8.4E-32 2.9E-36 269.1 33.1 254 256-537 8-345 (351)
105 3f3f_A Nucleoporin SEH1; struc 100.0 1.2E-31 4.2E-36 267.8 33.8 257 322-585 9-340 (351)
106 3jrp_A Fusion protein of prote 100.0 8.6E-32 2.9E-36 272.7 30.9 247 322-583 9-288 (379)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.5E-31 8.4E-36 276.2 34.6 307 259-587 4-396 (450)
108 3vu4_A KMHSV2; beta-propeller 100.0 3.2E-31 1.1E-35 265.9 32.5 286 257-584 17-338 (355)
109 3bws_A Protein LP49; two-domai 100.0 2.2E-30 7.6E-35 267.7 39.6 280 259-582 122-432 (433)
110 2j04_A TAU60, YPL007P, hypothe 100.0 4.4E-32 1.5E-36 276.4 25.3 265 258-581 14-296 (588)
111 3mmy_A MRNA export factor; mRN 100.0 1.6E-30 5.3E-35 262.2 34.4 280 214-529 43-346 (368)
112 3lrv_A PRE-mRNA-splicing facto 100.0 3.3E-31 1.1E-35 264.9 27.5 275 217-529 43-333 (343)
113 1l0q_A Surface layer protein; 100.0 3E-29 1E-33 255.5 41.6 314 223-585 3-345 (391)
114 3vu4_A KMHSV2; beta-propeller 100.0 5.8E-30 2E-34 256.8 31.9 271 215-531 24-338 (355)
115 2xyi_A Probable histone-bindin 100.0 5.8E-30 2E-34 264.1 30.6 243 322-583 126-411 (430)
116 2xyi_A Probable histone-bindin 100.0 1.6E-29 5.6E-34 260.7 33.9 251 258-531 127-412 (430)
117 3jro_A Fusion protein of prote 100.0 2.1E-30 7.3E-35 285.8 28.0 248 322-584 7-287 (753)
118 3lrv_A PRE-mRNA-splicing facto 100.0 4.2E-30 1.4E-34 256.8 27.6 271 265-583 42-334 (343)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.7E-29 5.9E-34 262.3 32.4 247 258-529 101-391 (450)
120 3jro_A Fusion protein of prote 100.0 3.4E-30 1.2E-34 284.2 28.0 249 256-530 6-286 (753)
121 4gq1_A NUP37; propeller, trans 100.0 2.6E-30 8.8E-35 263.2 24.4 300 259-580 15-387 (393)
122 3bws_A Protein LP49; two-domai 100.0 6.7E-28 2.3E-32 249.1 37.1 273 215-529 127-432 (433)
123 1l0q_A Surface layer protein; 100.0 1.1E-27 3.6E-32 244.0 37.6 264 272-586 3-279 (391)
124 2w18_A PALB2, fancn, partner a 100.0 4.1E-28 1.4E-32 232.2 30.0 236 327-580 42-355 (356)
125 4gq1_A NUP37; propeller, trans 100.0 1.8E-28 6.1E-33 249.6 28.9 285 218-527 26-387 (393)
126 2w18_A PALB2, fancn, partner a 100.0 4.2E-28 1.4E-32 232.2 28.7 186 334-527 145-355 (356)
127 1nir_A Nitrite reductase; hemo 100.0 9.4E-27 3.2E-31 245.6 36.8 329 217-589 144-521 (543)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.9E-25 6.4E-30 228.6 31.8 288 217-560 69-407 (415)
129 2ecf_A Dipeptidyl peptidase IV 99.9 3.6E-25 1.2E-29 244.9 33.2 320 214-584 40-461 (741)
130 1k32_A Tricorn protease; prote 99.9 5.7E-25 1.9E-29 251.7 33.9 332 213-584 55-463 (1045)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.1E-25 1.1E-29 227.0 26.7 277 259-584 62-389 (415)
132 1nir_A Nitrite reductase; hemo 99.9 1.3E-23 4.3E-28 221.7 33.8 297 214-537 182-522 (543)
133 1xfd_A DIP, dipeptidyl aminope 99.9 2.4E-24 8.2E-29 237.6 28.7 320 217-583 23-444 (723)
134 1ri6_A Putative isomerase YBHE 99.9 5.5E-23 1.9E-27 204.8 33.3 277 224-532 7-313 (343)
135 1k32_A Tricorn protease; prote 99.9 3.2E-23 1.1E-27 237.2 34.9 311 215-584 249-639 (1045)
136 2z3z_A Dipeptidyl aminopeptida 99.9 2.5E-23 8.5E-28 228.8 32.2 314 217-584 32-437 (706)
137 3u4y_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 198.4 36.0 284 266-587 4-309 (331)
138 3vgz_A Uncharacterized protein 99.9 6.8E-22 2.3E-26 197.9 36.5 270 259-573 40-335 (353)
139 2ecf_A Dipeptidyl peptidase IV 99.9 5.3E-23 1.8E-27 227.5 28.4 301 259-582 36-413 (741)
140 1pby_B Quinohemoprotein amine 99.9 1.4E-22 4.7E-27 201.3 25.7 269 272-590 2-318 (337)
141 1pby_B Quinohemoprotein amine 99.9 6.6E-22 2.2E-26 196.4 29.6 276 223-538 2-319 (337)
142 3u4y_A Uncharacterized protein 99.9 2.1E-21 7.2E-26 192.5 32.4 276 218-531 5-306 (331)
143 1ri6_A Putative isomerase YBHE 99.9 1.1E-21 3.7E-26 195.4 29.4 269 274-581 8-307 (343)
144 1xfd_A DIP, dipeptidyl aminope 99.9 9E-23 3.1E-27 225.0 23.1 282 260-583 17-394 (723)
145 3vgz_A Uncharacterized protein 99.9 3.4E-21 1.2E-25 192.7 32.2 269 216-520 46-335 (353)
146 2ojh_A Uncharacterized protein 99.9 1.9E-21 6.4E-26 189.0 26.6 252 227-520 17-293 (297)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-20 7E-25 191.9 33.8 311 259-582 36-405 (434)
148 2ojh_A Uncharacterized protein 99.9 1.9E-21 6.3E-26 189.1 24.8 252 277-573 18-293 (297)
149 1z68_A Fibroblast activation p 99.9 1.3E-21 4.4E-26 215.6 25.7 321 217-585 22-446 (719)
150 3scy_A Hypothetical bacterial 99.9 6E-20 2E-24 184.5 35.5 286 219-535 10-345 (361)
151 3hfq_A Uncharacterized protein 99.9 2.7E-20 9.3E-25 185.9 32.6 245 323-585 38-322 (347)
152 2z3z_A Dipeptidyl aminopeptida 99.9 1.9E-20 6.5E-25 205.8 32.4 285 214-531 85-437 (706)
153 3hfq_A Uncharacterized protein 99.9 5.6E-20 1.9E-24 183.6 32.1 276 230-534 14-324 (347)
154 3o4h_A Acylamino-acid-releasin 99.9 1.1E-20 3.8E-25 202.7 27.3 261 216-529 27-315 (582)
155 3o4h_A Acylamino-acid-releasin 99.9 8.2E-21 2.8E-25 203.7 25.3 267 258-582 20-315 (582)
156 1jmx_B Amine dehydrogenase; ox 99.9 4.9E-20 1.7E-24 183.9 27.1 237 331-590 6-333 (349)
157 3pe7_A Oligogalacturonate lyas 99.9 2E-19 6.8E-24 182.5 27.5 297 258-586 29-386 (388)
158 1jmx_B Amine dehydrogenase; ox 99.8 2.1E-19 7.1E-24 179.3 25.7 245 264-538 4-334 (349)
159 3scy_A Hypothetical bacterial 99.8 7.3E-18 2.5E-22 169.2 35.5 248 323-585 48-342 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.8 2.3E-18 7.9E-23 189.7 34.1 329 216-584 22-451 (740)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 2.6E-19 8.9E-24 183.6 22.7 250 323-587 35-338 (434)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.4E-17 4.6E-22 167.4 30.3 247 324-583 39-342 (365)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.5E-17 5.1E-22 167.1 30.5 282 225-531 5-343 (365)
164 1z68_A Fibroblast activation p 99.8 2.3E-18 8E-23 189.5 23.1 286 215-537 64-451 (719)
165 3pe7_A Oligogalacturonate lyas 99.8 1.9E-18 6.4E-23 175.3 20.5 272 217-527 42-380 (388)
166 2oiz_A Aromatic amine dehydrog 99.8 1.1E-16 3.6E-21 160.2 30.0 298 220-564 13-360 (361)
167 4a5s_A Dipeptidyl peptidase 4 99.8 2.9E-17 1E-21 180.9 26.9 250 259-534 16-358 (740)
168 3c5m_A Oligogalacturonate lyas 99.8 1.2E-17 4E-22 169.8 21.1 280 261-581 37-381 (396)
169 1q7f_A NHL, brain tumor CG1071 99.8 8E-16 2.7E-20 148.8 32.7 239 322-583 27-281 (286)
170 1q7f_A NHL, brain tumor CG1071 99.8 2.2E-15 7.6E-20 145.7 31.9 243 258-531 28-282 (286)
171 3fvz_A Peptidyl-glycine alpha- 99.8 4.9E-16 1.7E-20 153.5 27.8 241 324-582 23-322 (329)
172 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-14 1E-18 149.8 39.5 326 218-587 163-543 (567)
173 3azo_A Aminopeptidase; POP fam 99.7 7.3E-16 2.5E-20 167.9 27.9 283 216-535 29-375 (662)
174 3c5m_A Oligogalacturonate lyas 99.7 2.3E-16 7.8E-21 160.2 21.5 278 217-532 42-387 (396)
175 3azo_A Aminopeptidase; POP fam 99.7 9.1E-16 3.1E-20 167.1 26.6 283 258-585 22-372 (662)
176 3fvz_A Peptidyl-glycine alpha- 99.7 3.6E-15 1.2E-19 147.3 27.9 260 259-529 23-322 (329)
177 3dsm_A Uncharacterized protein 99.7 3.6E-15 1.2E-19 147.1 27.7 241 325-589 44-308 (328)
178 3no2_A Uncharacterized protein 99.7 3.1E-15 1.1E-19 143.2 26.1 253 334-602 5-272 (276)
179 2dg1_A DRP35, lactonase; beta 99.7 8.4E-15 2.9E-19 145.0 27.3 271 259-572 5-300 (333)
180 2gop_A Trilobed protease; beta 99.7 3.1E-14 1.1E-18 141.7 29.1 248 221-531 23-332 (347)
181 2z2n_A Virginiamycin B lyase; 99.7 1.5E-12 5.1E-17 126.3 39.7 276 258-583 13-296 (299)
182 2xdw_A Prolyl endopeptidase; a 99.7 4.3E-14 1.5E-18 154.9 31.1 242 322-584 122-416 (710)
183 2gop_A Trilobed protease; beta 99.7 7.9E-14 2.7E-18 138.8 29.5 254 259-581 14-330 (347)
184 2oiz_A Aromatic amine dehydrog 99.6 5E-14 1.7E-18 140.7 25.9 228 342-586 30-340 (361)
185 3dsm_A Uncharacterized protein 99.6 3.2E-13 1.1E-17 133.1 31.2 268 230-538 15-310 (328)
186 2bkl_A Prolyl endopeptidase; m 99.6 1.6E-14 5.4E-19 157.9 23.7 240 322-585 118-400 (695)
187 2dg1_A DRP35, lactonase; beta 99.6 1.9E-13 6.5E-18 135.2 29.4 265 217-520 12-301 (333)
188 1qks_A Cytochrome CD1 nitrite 99.6 7.9E-13 2.7E-17 138.9 35.5 299 215-537 201-546 (567)
189 2xdw_A Prolyl endopeptidase; a 99.6 1.5E-13 5.2E-18 150.6 31.1 278 219-531 80-416 (710)
190 2bkl_A Prolyl endopeptidase; m 99.6 3E-14 1E-18 155.8 24.7 279 218-532 75-400 (695)
191 3sjl_D Methylamine dehydrogena 99.6 3.7E-13 1.3E-17 132.5 28.1 288 217-539 39-373 (386)
192 3e5z_A Putative gluconolactona 99.6 2.9E-13 9.8E-18 131.5 27.2 230 323-583 26-287 (296)
193 2z2n_A Virginiamycin B lyase; 99.6 1.5E-11 5.3E-16 119.1 38.9 273 214-531 18-297 (299)
194 3e5z_A Putative gluconolactona 99.6 6.6E-13 2.3E-17 128.9 28.8 236 258-533 26-290 (296)
195 1rwi_B Serine/threonine-protei 99.6 5.2E-13 1.8E-17 127.6 26.2 237 326-585 25-267 (270)
196 2mad_H Methylamine dehydrogena 99.6 1.1E-11 3.9E-16 123.7 36.3 282 218-536 28-357 (373)
197 1rwi_B Serine/threonine-protei 99.6 1.4E-12 4.7E-17 124.7 26.8 236 261-532 25-267 (270)
198 3no2_A Uncharacterized protein 99.6 1E-12 3.5E-17 125.6 24.5 233 269-538 3-261 (276)
199 2qc5_A Streptogramin B lactona 99.5 8.5E-11 2.9E-15 113.9 38.0 275 258-581 18-299 (300)
200 1yr2_A Prolyl oligopeptidase; 99.5 7.6E-13 2.6E-17 145.6 25.9 280 218-532 114-444 (741)
201 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 1.3E-11 4.4E-16 120.7 30.2 234 324-582 17-299 (314)
202 3sjl_D Methylamine dehydrogena 99.5 6.7E-12 2.3E-16 123.6 27.1 281 265-590 38-371 (386)
203 2mad_H Methylamine dehydrogena 99.5 7.6E-11 2.6E-15 117.7 35.3 237 329-586 70-354 (373)
204 2qc5_A Streptogramin B lactona 99.5 1.9E-10 6.5E-15 111.4 36.5 269 215-528 24-299 (300)
205 1yr2_A Prolyl oligopeptidase; 99.5 4.6E-12 1.6E-16 139.4 26.6 242 323-585 161-444 (741)
206 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.2E-11 1.4E-15 117.0 29.3 244 259-529 17-299 (314)
207 3c75_H MADH, methylamine dehyd 99.4 2.7E-11 9.2E-16 121.6 25.2 278 220-536 82-409 (426)
208 3q7m_A Lipoprotein YFGL, BAMB; 99.4 4.1E-10 1.4E-14 113.1 33.3 303 221-580 52-376 (376)
209 1xip_A Nucleoporin NUP159; bet 99.4 5.5E-11 1.9E-15 117.6 25.4 172 325-517 38-232 (388)
210 1yiq_A Quinohemoprotein alcoho 99.4 7E-11 2.4E-15 127.8 28.4 293 271-593 70-516 (689)
211 1kb0_A Quinohemoprotein alcoho 99.4 5.2E-11 1.8E-15 128.6 27.2 295 271-593 77-518 (677)
212 3g4e_A Regucalcin; six bladed 99.4 2.6E-10 8.9E-15 110.5 29.1 226 259-518 12-261 (297)
213 1kb0_A Quinohemoprotein alcoho 99.4 9.4E-11 3.2E-15 126.6 27.0 322 222-581 77-566 (677)
214 1yiq_A Quinohemoprotein alcoho 99.4 3E-10 1E-14 122.9 30.3 311 222-570 70-537 (689)
215 3g4e_A Regucalcin; six bladed 99.4 5.5E-10 1.9E-14 108.2 29.2 222 325-570 13-260 (297)
216 1xip_A Nucleoporin NUP159; bet 99.3 5E-11 1.7E-15 117.9 20.0 173 215-422 42-231 (388)
217 3hrp_A Uncharacterized protein 99.3 4.9E-10 1.7E-14 113.5 27.8 245 325-580 131-408 (409)
218 3c75_H MADH, methylamine dehyd 99.3 2.4E-10 8.2E-15 114.7 24.6 238 329-586 122-406 (426)
219 3hrp_A Uncharacterized protein 99.3 5E-10 1.7E-14 113.4 27.1 234 260-527 131-408 (409)
220 2ghs_A AGR_C_1268P; regucalcin 99.3 3E-09 1E-13 104.4 30.3 216 327-570 51-290 (326)
221 2ghs_A AGR_C_1268P; regucalcin 99.3 4E-09 1.4E-13 103.5 31.2 224 261-519 50-292 (326)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.3E-09 7.8E-14 107.7 30.0 285 270-591 52-346 (376)
223 3iuj_A Prolyl endopeptidase; h 99.3 2.6E-10 8.9E-15 124.2 24.0 240 258-533 127-409 (693)
224 2qe8_A Uncharacterized protein 99.3 2E-10 6.9E-15 113.7 20.8 269 260-578 17-317 (343)
225 3dr2_A Exported gluconolactona 99.3 1.5E-09 5.2E-14 105.5 25.4 225 258-521 43-299 (305)
226 3hxj_A Pyrrolo-quinoline quino 99.2 3.4E-10 1.2E-14 111.4 19.9 294 224-584 32-326 (330)
227 3iuj_A Prolyl endopeptidase; h 99.2 7.2E-10 2.5E-14 120.7 22.5 238 322-585 126-408 (693)
228 2qe8_A Uncharacterized protein 99.2 7.1E-10 2.4E-14 109.8 20.5 273 214-525 20-317 (343)
229 2hz6_A Endoplasmic reticulum t 99.2 7.3E-13 2.5E-17 132.6 -1.4 225 334-591 9-249 (369)
230 3dr2_A Exported gluconolactona 99.2 4.7E-09 1.6E-13 102.0 25.8 224 323-576 43-301 (305)
231 1mda_H Methylamine dehydrogena 99.2 6.8E-10 2.3E-14 109.6 18.3 262 233-538 47-355 (368)
232 2hz6_A Endoplasmic reticulum t 99.2 1.3E-11 4.3E-16 123.5 4.9 185 376-590 11-200 (369)
233 1mda_H Methylamine dehydrogena 99.2 1E-09 3.5E-14 108.4 17.6 228 344-586 47-350 (368)
234 2ece_A 462AA long hypothetical 99.2 3.6E-08 1.2E-12 97.6 28.5 227 334-570 95-399 (462)
235 1fwx_A Nitrous oxide reductase 99.1 6.3E-09 2.2E-13 106.7 23.1 240 328-585 90-434 (595)
236 1kv9_A Type II quinohemoprotei 99.1 2E-08 6.9E-13 108.3 27.4 291 271-592 66-498 (668)
237 1kv9_A Type II quinohemoprotei 99.1 7E-08 2.4E-12 104.1 28.4 289 222-538 66-497 (668)
238 3hxj_A Pyrrolo-quinoline quino 99.1 2E-09 7E-14 105.7 15.0 265 266-590 26-291 (330)
239 2ad6_A Methanol dehydrogenase 99.0 1.7E-07 5.8E-12 98.9 28.9 292 271-592 62-504 (571)
240 2iwa_A Glutamine cyclotransfer 99.0 1.4E-07 4.6E-12 87.9 23.9 217 353-584 9-239 (266)
241 4a2l_A BT_4663, two-component 99.0 8.7E-06 3E-10 90.1 42.9 324 217-584 269-616 (795)
242 4a2l_A BT_4663, two-component 99.0 8.8E-06 3E-10 90.1 42.7 327 219-584 223-573 (795)
243 2ad6_A Methanol dehydrogenase 99.0 2.5E-07 8.7E-12 97.6 28.6 244 270-538 114-503 (571)
244 1w6s_A Methanol dehydrogenase 99.0 2E-07 6.9E-12 98.2 26.4 251 265-538 111-512 (599)
245 1npe_A Nidogen, entactin; glyc 98.9 2.5E-06 8.6E-11 80.7 30.6 198 326-537 37-246 (267)
246 2ece_A 462AA long hypothetical 98.9 2.2E-07 7.6E-12 92.0 23.5 202 373-582 93-352 (462)
247 1npe_A Nidogen, entactin; glyc 98.9 2.7E-06 9.1E-11 80.6 30.7 228 335-586 2-242 (267)
248 1w6s_A Methanol dehydrogenase 98.9 7.3E-07 2.5E-11 94.0 28.2 292 271-592 62-513 (599)
249 3nol_A Glutamine cyclotransfer 98.9 1.3E-07 4.5E-12 86.8 19.5 200 354-569 32-243 (262)
250 1flg_A Protein (quinoprotein e 98.9 1.6E-06 5.3E-11 91.6 30.0 292 271-593 68-527 (582)
251 1flg_A Protein (quinoprotein e 98.9 1.6E-06 5.5E-11 91.5 29.2 270 270-570 116-548 (582)
252 3v9f_A Two-component system se 98.9 3.8E-05 1.3E-09 84.8 41.3 327 220-584 267-613 (781)
253 2iwa_A Glutamine cyclotransfer 98.8 1.4E-06 4.7E-11 81.2 24.7 199 261-485 22-237 (266)
254 3v9f_A Two-component system se 98.8 3.6E-05 1.2E-09 85.0 39.0 316 224-583 325-657 (781)
255 3nok_A Glutaminyl cyclase; bet 98.8 7.9E-07 2.7E-11 81.6 20.8 198 354-570 44-254 (268)
256 1fwx_A Nitrous oxide reductase 98.8 4.1E-07 1.4E-11 93.4 20.9 185 374-583 100-362 (595)
257 3mbr_X Glutamine cyclotransfer 98.8 3.5E-06 1.2E-10 76.8 23.8 201 354-570 10-223 (243)
258 3nok_A Glutaminyl cyclase; bet 98.8 1.2E-06 4.1E-11 80.4 20.8 184 325-518 55-254 (268)
259 3nol_A Glutamine cyclotransfer 98.7 1.8E-06 6.2E-11 79.3 21.7 185 326-518 44-244 (262)
260 2fp8_A Strictosidine synthase; 98.7 7.5E-06 2.6E-10 79.8 26.0 233 327-583 21-314 (322)
261 3mbr_X Glutamine cyclotransfer 98.7 1.3E-05 4.5E-10 72.9 24.8 187 324-518 20-223 (243)
262 2xbg_A YCF48-like protein; pho 98.7 0.00032 1.1E-08 68.3 36.8 276 259-580 35-320 (327)
263 2fp8_A Strictosidine synthase; 98.6 2.7E-05 9.1E-10 75.9 27.3 246 260-529 19-313 (322)
264 1ijq_A LDL receptor, low-densi 98.6 0.00011 3.8E-09 71.2 31.4 227 336-584 3-240 (316)
265 3v64_C Agrin; beta propeller, 98.6 0.00022 7.4E-09 70.2 32.4 233 328-584 37-277 (349)
266 3v65_B Low-density lipoprotein 98.5 0.00015 5.1E-09 72.4 30.8 227 334-584 87-320 (386)
267 3v64_C Agrin; beta propeller, 98.5 0.00033 1.1E-08 68.8 32.6 201 325-537 73-283 (349)
268 1ijq_A LDL receptor, low-densi 98.5 0.00039 1.3E-08 67.2 32.3 202 325-537 30-246 (316)
269 1k3i_A Galactose oxidase precu 98.5 1.1E-05 3.7E-10 87.1 22.7 272 215-518 190-530 (656)
270 2p4o_A Hypothetical protein; p 98.5 0.00027 9.3E-09 68.1 30.5 223 260-520 32-279 (306)
271 3p5b_L Low density lipoprotein 98.5 0.00061 2.1E-08 68.3 33.0 230 334-585 83-323 (400)
272 2p4o_A Hypothetical protein; p 98.4 0.00011 3.7E-09 70.9 26.2 228 325-572 32-278 (306)
273 3v65_B Low-density lipoprotein 98.4 0.00026 9E-09 70.6 29.6 201 325-537 116-326 (386)
274 3qqz_A Putative uncharacterize 98.4 0.00033 1.1E-08 64.6 27.3 217 358-580 21-251 (255)
275 3p5b_L Low density lipoprotein 98.4 0.00084 2.9E-08 67.3 32.3 204 323-537 110-328 (400)
276 1k3i_A Galactose oxidase precu 98.4 2.2E-05 7.6E-10 84.6 22.1 234 326-571 244-530 (656)
277 2xtc_A F-box-like/WD repeat-co 98.3 2.8E-07 9.6E-12 67.5 3.4 36 6-44 1-36 (90)
278 3sov_A LRP-6, low-density lipo 98.3 0.00043 1.5E-08 66.9 26.8 227 336-585 6-241 (318)
279 3qqz_A Putative uncharacterize 98.3 0.0006 2E-08 62.9 26.0 199 322-529 24-253 (255)
280 4hw6_A Hypothetical protein, I 98.2 0.00045 1.5E-08 70.0 25.9 245 326-581 140-432 (433)
281 2xe4_A Oligopeptidase B; hydro 98.2 9.4E-05 3.2E-09 80.9 21.6 194 365-579 175-395 (751)
282 3tc9_A Hypothetical hydrolase; 98.2 0.00095 3.2E-08 67.6 27.0 244 326-581 138-429 (430)
283 2xe4_A Oligopeptidase B; hydro 98.1 0.00041 1.4E-08 75.9 25.1 237 261-532 175-461 (751)
284 3m0c_C LDL receptor, low-densi 98.1 0.0047 1.6E-07 67.2 32.2 202 324-537 423-640 (791)
285 2xbg_A YCF48-like protein; pho 98.1 0.0082 2.8E-07 58.2 36.5 272 215-527 40-320 (327)
286 3sov_A LRP-6, low-density lipo 98.1 0.0038 1.3E-07 60.2 28.0 200 326-537 36-246 (318)
287 3m0c_C LDL receptor, low-densi 98.1 0.0052 1.8E-07 66.8 31.6 229 334-584 395-634 (791)
288 3amr_A 3-phytase; beta-propell 98.0 0.0018 6.2E-08 62.1 24.1 193 336-537 42-272 (355)
289 4hw6_A Hypothetical protein, I 98.0 0.0031 1.1E-07 63.8 26.8 241 260-528 139-432 (433)
290 4a0p_A LRP6, LRP-6, low-densit 98.0 0.013 4.4E-07 62.2 32.5 225 336-585 8-240 (628)
291 3tc9_A Hypothetical hydrolase; 98.0 0.0038 1.3E-07 63.1 26.6 240 261-528 138-429 (430)
292 3ei3_A DNA damage-binding prot 98.0 0.044 1.5E-06 62.3 37.6 328 222-582 571-999 (1158)
293 1n7d_A LDL receptor, low-densi 97.9 9.1E-05 3.1E-09 80.0 13.7 202 325-537 406-622 (699)
294 3amr_A 3-phytase; beta-propell 97.8 0.006 2.1E-07 58.5 23.1 183 376-581 42-262 (355)
295 1uuj_A Platelet-activating fac 97.8 1E-05 3.4E-10 58.9 2.7 67 5-71 2-70 (88)
296 3kya_A Putative phosphatase; s 97.8 0.023 8E-07 57.6 28.0 254 326-585 140-478 (496)
297 1n7d_A LDL receptor, low-densi 97.8 9.8E-05 3.3E-09 79.7 11.0 228 336-585 379-617 (699)
298 4a0p_A LRP6, LRP-6, low-densit 97.7 0.069 2.4E-06 56.6 32.7 199 325-537 37-245 (628)
299 3s94_A LRP-6, low-density lipo 97.7 0.012 4.2E-07 62.3 26.4 226 337-585 12-246 (619)
300 3s94_A LRP-6, low-density lipo 97.7 0.087 3E-06 55.8 40.2 333 210-583 39-424 (619)
301 2p9w_A MAL S 1 allergenic prot 97.6 0.0028 9.5E-08 60.2 17.8 161 366-529 15-215 (334)
302 3kya_A Putative phosphatase; s 97.6 0.024 8.2E-07 57.5 25.8 249 261-533 140-479 (496)
303 2p9w_A MAL S 1 allergenic prot 97.5 0.0054 1.9E-07 58.2 18.1 168 403-582 11-215 (334)
304 1bpo_A Protein (clathrin); cla 97.5 0.087 3E-06 51.6 34.3 228 334-584 77-333 (494)
305 3ii7_A Kelch-like protein 7; p 97.5 0.032 1.1E-06 53.2 23.7 226 336-589 14-277 (306)
306 3ii7_A Kelch-like protein 7; p 97.5 0.034 1.2E-06 53.1 23.7 186 334-534 56-277 (306)
307 2xzh_A Clathrin heavy chain 1; 97.4 0.083 2.9E-06 49.7 34.7 228 334-584 78-334 (365)
308 2vpj_A Kelch-like protein 12; 97.3 0.044 1.5E-06 52.1 21.8 222 343-590 31-284 (301)
309 3a9g_A Putative uncharacterize 97.2 0.18 6.1E-06 49.2 27.0 228 325-570 29-330 (354)
310 2xn4_A Kelch-like protein 2; s 97.2 0.12 4E-06 49.1 24.1 222 343-591 30-283 (302)
311 2xzh_A Clathrin heavy chain 1; 97.2 0.15 5.1E-06 48.1 33.8 263 232-533 49-336 (365)
312 2vpj_A Kelch-like protein 12; 97.2 0.13 4.4E-06 48.8 24.3 185 334-533 63-282 (301)
313 3sre_A PON1, serum paraoxonase 97.2 0.19 6.5E-06 48.7 25.0 199 365-581 51-297 (355)
314 3pbp_A Nucleoporin NUP82; beta 97.2 0.032 1.1E-06 54.6 19.0 152 372-525 29-208 (452)
315 2be1_A Serine/threonine-protei 97.1 0.00093 3.2E-08 64.3 8.0 202 376-589 12-239 (339)
316 2ism_A Putative oxidoreductase 97.1 0.25 8.7E-06 48.1 25.5 225 326-570 32-333 (352)
317 1zgk_A Kelch-like ECH-associat 97.1 0.095 3.2E-06 50.0 21.6 230 334-590 25-293 (308)
318 3sre_A PON1, serum paraoxonase 97.0 0.089 3.1E-06 51.0 21.0 172 342-528 82-297 (355)
319 3ei3_A DNA damage-binding prot 97.0 0.75 2.6E-05 52.3 40.1 307 222-584 523-915 (1158)
320 3pbp_A Nucleoporin NUP82; beta 96.9 0.059 2E-06 52.8 18.2 145 334-480 32-207 (452)
321 1xi4_A Clathrin heavy chain; a 96.9 0.089 3E-06 59.5 21.7 190 334-537 77-297 (1630)
322 4asc_A Kelch repeat and BTB do 96.9 0.31 1E-05 46.5 23.8 224 341-590 11-283 (315)
323 2xn4_A Kelch-like protein 2; s 96.9 0.23 7.8E-06 47.1 22.4 184 334-532 62-279 (302)
324 2be1_A Serine/threonine-protei 96.8 0.03 1E-06 53.8 15.5 196 273-490 12-236 (339)
325 1bpo_A Protein (clathrin); cla 96.7 0.49 1.7E-05 46.5 35.1 263 232-533 48-335 (494)
326 2g8s_A Glucose/sorbosone dehyd 96.7 0.52 1.8E-05 45.9 25.6 239 326-580 19-350 (353)
327 2uvk_A YJHT; unknown function, 96.7 0.29 1E-05 47.6 22.0 90 334-425 20-128 (357)
328 4asc_A Kelch repeat and BTB do 96.7 0.43 1.5E-05 45.5 22.7 179 345-535 69-283 (315)
329 2ism_A Putative oxidoreductase 96.6 0.27 9.1E-06 47.9 21.3 104 364-472 31-151 (352)
330 1zgk_A Kelch-like ECH-associat 96.6 0.45 1.5E-05 45.2 22.4 176 343-533 90-291 (308)
331 2uvk_A YJHT; unknown function, 96.6 0.28 9.6E-06 47.8 21.1 58 477-538 286-351 (357)
332 1tl2_A L10, protein (tachylect 96.5 0.061 2.1E-06 47.6 13.7 149 364-523 41-204 (236)
333 3das_A Putative oxidoreductase 96.4 0.23 7.7E-06 48.0 18.5 115 399-517 26-158 (347)
334 1xi4_A Clathrin heavy chain; a 96.4 0.35 1.2E-05 54.9 21.9 262 232-533 48-335 (1630)
335 1tl2_A L10, protein (tachylect 96.2 0.2 6.8E-06 44.3 15.2 187 376-580 6-206 (236)
336 2woz_A Kelch repeat and BTB do 96.2 0.92 3.2E-05 43.2 23.8 222 343-590 24-293 (318)
337 3ott_A Two-component system se 96.1 2.1 7E-05 46.6 36.4 237 259-532 21-263 (758)
338 2woz_A Kelch repeat and BTB do 96.0 0.9 3.1E-05 43.3 20.9 176 345-535 80-293 (318)
339 3a9g_A Putative uncharacterize 95.9 0.29 9.9E-06 47.7 17.1 146 363-515 28-214 (354)
340 1cru_A Protein (soluble quinop 95.8 1.8 6.3E-05 43.5 22.8 109 405-517 27-162 (454)
341 1cru_A Protein (soluble quinop 95.6 1.8 6.1E-05 43.6 22.0 107 363-472 26-160 (454)
342 3ott_A Two-component system se 95.6 3.2 0.00011 45.0 39.9 318 223-581 113-447 (758)
343 3sbq_A Nitrous-oxide reductase 95.5 1.9 6.5E-05 43.8 20.5 240 274-530 73-409 (638)
344 2zwa_A Leucine carboxyl methyl 95.5 1.3 4.3E-05 47.6 21.2 195 334-533 398-639 (695)
345 3qhy_B Beta-lactamase inhibito 95.4 1.6 5.5E-05 40.7 19.4 224 325-584 24-248 (282)
346 3s25_A Hypothetical 7-bladed b 95.2 2.2 7.5E-05 40.2 28.9 242 218-517 21-280 (302)
347 2zwa_A Leucine carboxyl methyl 94.4 3.8 0.00013 43.9 21.3 196 373-584 396-637 (695)
348 3s25_A Hypothetical 7-bladed b 93.1 5.8 0.0002 37.3 26.9 158 344-531 89-257 (302)
349 2g8s_A Glucose/sorbosone dehyd 93.1 6.7 0.00023 37.8 26.4 63 405-473 271-340 (353)
350 3sbq_A Nitrous-oxide reductase 92.7 8.4 0.00029 39.2 18.5 234 337-583 73-409 (638)
351 3q6k_A 43.2 kDa salivary prote 91.1 12 0.0004 36.4 21.7 185 344-570 124-342 (381)
352 3qhy_B Beta-lactamase inhibito 90.4 11 0.00038 34.9 20.5 183 326-530 64-247 (282)
353 3q6k_A 43.2 kDa salivary prote 89.7 14 0.0005 35.7 16.6 121 456-582 152-306 (381)
354 3das_A Putative oxidoreductase 89.6 15 0.00051 35.2 27.8 240 210-473 31-325 (347)
355 4hvt_A Ritya.17583.B, post-pro 86.3 38 0.0013 36.1 24.9 180 343-531 216-431 (711)
356 2wg3_C Hedgehog-interacting pr 86.2 14 0.00048 37.1 14.7 112 405-518 14-158 (463)
357 2wg3_C Hedgehog-interacting pr 83.1 20 0.00069 35.9 14.2 110 457-573 15-160 (463)
358 2d68_A FOP, FGFR1OP; alpha hel 81.1 1.3 4.5E-05 31.9 3.3 30 14-43 19-48 (82)
359 4gq2_M Nucleoporin NUP120; bet 78.5 11 0.00036 42.1 11.2 42 498-539 235-276 (950)
360 3no0_A DNA gyrase subunit A; D 78.3 41 0.0014 30.9 19.0 203 365-582 25-246 (276)
361 4gq2_M Nucleoporin NUP120; bet 73.3 35 0.0012 37.9 13.6 39 405-443 236-274 (950)
362 3b7f_A Glycosyl hydrolase, BNR 68.2 89 0.003 30.2 26.1 218 365-591 116-379 (394)
363 3zwu_A Alkaline phosphatase PH 62.0 21 0.00072 36.9 8.3 58 457-516 477-548 (592)
364 3uc1_A DNA gyrase subunit A; D 61.6 1.1E+02 0.0037 28.8 23.4 161 363-529 94-279 (327)
365 3f7f_A Nucleoporin NUP120; nuc 59.1 25 0.00085 37.1 8.2 31 508-538 229-259 (729)
366 4a9v_A PHOX; hydrolase, beta-p 53.5 47 0.0016 34.0 8.9 61 456-517 476-549 (592)
367 3elq_A Arylsulfate sulfotransf 52.3 2.1E+02 0.0072 29.3 17.3 132 457-593 208-395 (571)
368 3ct5_A Morphogenesis protein 1 48.3 11 0.00038 31.3 2.9 41 4-44 5-50 (159)
369 1kdl_A YOPD protein; yersinia, 47.9 11 0.00038 19.8 1.7 15 13-27 4-18 (26)
370 4a9v_A PHOX; hydrolase, beta-p 45.8 90 0.0031 32.0 9.5 59 365-423 477-549 (592)
371 3uc1_A DNA gyrase subunit A; D 44.9 2E+02 0.0069 27.0 25.8 239 223-484 4-278 (327)
372 2zux_A YESW protein; beta-prop 44.1 2.8E+02 0.0095 28.3 20.7 16 345-360 231-246 (591)
373 3b7f_A Glycosyl hydrolase, BNR 42.8 2.3E+02 0.0079 27.1 26.6 243 335-590 23-328 (394)
374 1zbp_A Hypothetical protein VP 41.3 20 0.0007 32.5 3.7 56 20-75 4-64 (273)
375 4hvt_A Ritya.17583.B, post-pro 40.2 3.6E+02 0.012 28.5 23.0 218 343-581 156-429 (711)
376 3zwu_A Alkaline phosphatase PH 39.2 77 0.0026 32.8 8.1 60 406-473 477-548 (592)
377 4fhn_B Nucleoporin NUP120; pro 39.0 1.3E+02 0.0043 34.3 10.6 33 554-587 241-273 (1139)
378 3f7f_A Nucleoporin NUP120; nuc 37.7 47 0.0016 35.1 6.2 37 325-361 222-259 (729)
379 1zi0_A DNA gyrase subunit A; b 36.4 2.6E+02 0.0089 25.8 28.1 245 220-485 1-277 (307)
380 2jvf_A De novo protein M7; tet 35.3 19 0.00066 24.3 1.9 22 9-30 58-79 (96)
381 1vk8_A Hypothetical protein TM 35.2 5.3 0.00018 30.5 -1.0 30 38-68 43-72 (106)
382 4fhn_B Nucleoporin NUP120; pro 33.1 33 0.0011 39.0 4.7 40 499-538 238-277 (1139)
383 2cp8_A NEXT to BRCA1 gene 1 pr 32.1 35 0.0012 22.2 2.6 23 6-31 1-23 (54)
384 1suu_A DNA gyrase subunit A; t 28.4 3.6E+02 0.012 24.9 28.1 201 218-435 4-231 (312)
385 2xz2_A CSTF-50, isoform B; RNA 27.0 60 0.002 22.0 3.1 31 9-42 15-45 (66)
386 3lpz_A GET4 (YOR164C homolog); 27.0 43 0.0015 31.7 3.4 23 46-68 16-41 (336)
387 1oyi_A Double-stranded RNA-bin 26.9 33 0.0011 24.7 2.0 31 12-44 14-44 (82)
388 2jt1_A PEFI protein; solution 25.7 45 0.0015 23.6 2.6 35 10-44 3-38 (77)
389 3csq_A Morphogenesis protein 1 24.7 40 0.0014 32.0 2.9 41 4-44 5-50 (334)
390 2ysi_A Transcription elongatio 23.3 1.3E+02 0.0043 18.0 4.3 28 564-591 11-38 (40)
391 1lxj_A YBL001C, hypothetical 1 23.1 9.4 0.00032 29.1 -1.5 30 38-68 34-63 (104)
392 1yqh_A DUF77, IG hypothetical 22.9 11 0.00039 28.9 -1.1 30 38-68 35-64 (109)
393 2ibo_A Hypothetical protein SP 22.4 9.4 0.00032 29.1 -1.6 30 38-68 30-59 (104)
394 2dk7_A Transcription elongatio 21.9 1.2E+02 0.0039 21.2 3.9 32 563-594 20-51 (73)
395 1wp5_A Topoisomerase IV; broke 21.2 5E+02 0.017 24.1 25.8 186 336-529 7-225 (323)
396 1lxn_A Hypothetical protein MT 20.8 13 0.00043 28.1 -1.2 31 37-68 29-60 (99)
397 2epi_A UPF0045 protein MJ1052; 20.7 11 0.00036 28.6 -1.7 30 38-68 34-63 (100)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.4e-50 Score=415.35 Aligned_cols=279 Identities=18% Similarity=0.218 Sum_probs=250.2
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
+|.++|++++|+|++++|++|+.||+|+|||+.+++.. ..+ .+|...|.+++|+ +
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~---------------------~~l--~~h~~~V~~v~~~~~~ 162 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE---------------------RTL--KGHTDSVQDISFDHSG 162 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC---------------------EEE--CCCSSCEEEEEECTTS
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE---------------------EEE--eccCCcEEEEEEcCCC
Confidence 39999999999999999999999999999998776541 111 1699999999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEE
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 412 (608)
++|++|+ |++|++||+.+++++..+.+|...|.+++|+|++ .|++|+.|++|++||+.++.++..+.+|...|.++.+
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 8999999 9999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC--------------------CCEEEE
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--------------------QIHLLS 472 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--------------------~~~l~~ 472 (608)
+|++.++++++.|++|++||+.+++ ... ...+|. ..|.+++|+|+ |.++++
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~~-----~~~-~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATKE-----CKA-ELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCc-----eee-EecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 9999999999999999999998843 233 345676 68999999996 567888
Q ss_pred -EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccc
Q 007306 473 -IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 473 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 551 (608)
+.|+.|++||++++.++..+.. |...|.+++|+|+|++|++|+.||.|++||+.+++.+..+. +| ...
T Consensus 314 gs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~-------~h-~~~- 382 (410)
T 1vyh_C 314 GSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN-------AH-EHF- 382 (410)
T ss_dssp EETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE-------CC-SSC-
T ss_pred EeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc-------CC-CCc-
Confidence 5899999999999999988864 68999999999999999999999999999999999888876 44 333
Q ss_pred ccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 552 YPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 552 ~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
+++++|+| ++.+|++|+.||+|+||++
T Consensus 383 -v~~l~~~~-~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 383 -VTSLDFHK-TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -EEEEEECS-SSSCEEEEETTSEEEEEC-
T ss_pred -EEEEEEcC-CCCEEEEEeCCCcEEEEeC
Confidence 45999999 7999999999999999986
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-45 Score=397.29 Aligned_cols=350 Identities=14% Similarity=0.127 Sum_probs=275.1
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC----CcEEEEecCC
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQS 290 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d----g~i~iw~~~~ 290 (608)
.++|+|||++||+|+.|++|++||+..+ .......+.+ |.++|.+++|+|+|++|++++.+ +.|++||...
T Consensus 64 ~~~~spdg~~lasg~~d~~v~lWd~~~~---~~~~~~~~~~--~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~ 138 (611)
T 1nr0_A 64 VAKTSPSGYYCASGDVHGNVRIWDTTQT---THILKTTIPV--FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT 138 (611)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEESSST---TCCEEEEEEC--SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred EEEECCCCcEEEEEeCCCCEEEeECCCC---cceeeEeecc--cCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC
Confidence 4589999999999999999999998642 1222223444 89999999999999999999875 4788887532
Q ss_pred Ccc--------------------eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEE
Q 007306 291 NKQ--------------------SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISI 347 (608)
Q Consensus 291 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~v 347 (608)
... .+...+.+..+++||..++++...+. +|...|.+++|+ +++|++++ |++|++
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~--~H~~~V~~v~fspdg~~las~s~D~~i~l 216 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDGTIVL 216 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec--cccCceEEEEECCCCCEEEEEECCCcEEE
Confidence 111 11123445578999988887665433 799999999999 88999999 999999
Q ss_pred EEcCCCceeeEec-------CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE---------------------
Q 007306 348 FSLETFQTLATFA-------NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--------------------- 398 (608)
Q Consensus 348 wd~~~~~~~~~~~-------~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~--------------------- 398 (608)
||+.+++.+..+. +|.+.|.+++|+|++ +|++++.|++|++||+.+++.+.
T Consensus 217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (611)
T 1nr0_A 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296 (611)
T ss_dssp EETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred EECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence 9999999988884 799999999999999 99999999999999998876543
Q ss_pred ----------------------EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc------c-------
Q 007306 399 ----------------------KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK------F------- 443 (608)
Q Consensus 399 ----------------------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~------~------- 443 (608)
.+.+|...|.+++|+|+|++|++++.|++|++||+.+++..... .
T Consensus 297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s 376 (611)
T 1nr0_A 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 376 (611)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence 33578899999999999999999999999999999875432110 0
Q ss_pred -------------ee-----------------e---------e-ec-----------------------cCCCCccceEE
Q 007306 444 -------------LH-----------------S---------F-QT-----------------------GLVPETTIVNH 460 (608)
Q Consensus 444 -------------~~-----------------~---------~-~~-----------------------~~~~~~~~v~~ 460 (608)
++ . + .. .|. ..+.+
T Consensus 377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~---~~v~~ 453 (611)
T 1nr0_A 377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS---YNSSC 453 (611)
T ss_dssp TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS---SCEEE
T ss_pred CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC---CCceE
Confidence 00 0 0 00 011 35789
Q ss_pred EEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC-CceeEEEec
Q 007306 461 IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST-LELRCQINL 538 (608)
Q Consensus 461 v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~-~~~~~~~~~ 538 (608)
++|+|||++|++ +.|+.|++||+.++....... ..|...|.+++|+|||++|++++.|+.|++|++.+ ++......
T Consensus 454 va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~- 531 (611)
T 1nr0_A 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS- 531 (611)
T ss_dssp EEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC-
T ss_pred EEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeee-
Confidence 999999999999 589999999997765422122 24789999999999999999999999999999987 54433211
Q ss_pred eeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 539 TAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 539 ~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
..+| ...++ +++|+| |+.+||+|+.|++|++|++.+++
T Consensus 532 ----~~~H-~~~V~--~v~fsp-dg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 532 ----WTFH-TAKVA--CVSWSP-DNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ----CCCC-SSCEE--EEEECT-TSSEEEEEETTSCEEEEETTCTT
T ss_pred ----eeec-cccee--EEEECC-CCCEEEEEECCCcEEEEECCCcc
Confidence 1124 44444 999999 89999999999999999998765
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-43 Score=382.64 Aligned_cols=341 Identities=14% Similarity=0.142 Sum_probs=271.4
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
+|+|||+.|++++ +++|++|++.+ ...... +. +|.+.|++++|||+|++||+|+.||+|+|||+.++.....
T Consensus 25 ~~spdg~~l~~~~-~~~v~l~~~~~---~~~~~~--~~--~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~ 96 (611)
T 1nr0_A 25 GNTPAGDKIQYCN-GTSVYTVPVGS---LTDTEI--YT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96 (611)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTC---SSCCEE--EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred eeCCCCCEEEeCC-CCEEEEecCCC---cccCeE--ec--CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceee
Confidence 6999999999988 56999999974 222332 43 4999999999999999999999999999999865432111
Q ss_pred ----eccc-----------------------ceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC-EEEEEe-CCcE
Q 007306 297 ----EENV-----------------------NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-HLFSAS-GGKI 345 (608)
Q Consensus 297 ----~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~-~l~s~~-d~~i 345 (608)
.... ...+.+||. +.....+ .+|...|++++|+ +. .|++++ |++|
T Consensus 97 ~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l--~gh~~~v~~v~f~p~~~~~l~s~s~D~~v 172 (611)
T 1nr0_A 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDDNTV 172 (611)
T ss_dssp EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC--CCCSSCEEEEEECSSSSCEEEEEETTSCE
T ss_pred EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCccee--cCCCCCceEEEECCCCCeEEEEEeCCCeE
Confidence 0000 024556663 3333222 2799999999999 44 699999 9999
Q ss_pred EEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee-------CccccEEEEEEeCCCC
Q 007306 346 SIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLN 417 (608)
Q Consensus 346 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~ 417 (608)
++||..++++...+.+|...|.+++|+|++ +|++|+.|++|++||+.+++.+..+. +|...|.+++|+|+++
T Consensus 173 ~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~ 252 (611)
T 1nr0_A 173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252 (611)
T ss_dssp EEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred EEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCC
Confidence 999999999999999999999999999999 99999999999999999999888884 7999999999999999
Q ss_pred EEEEEcCCCcEEEEECCCCceecccc-------------------------------------eeeeeccCCCCccceEE
Q 007306 418 VLVSSGADAQLCVWDAVGWKKLCSKF-------------------------------------LHSFQTGLVPETTIVNH 460 (608)
Q Consensus 418 ~l~s~~~d~~i~vwd~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~v~~ 460 (608)
+|++++.|++|++||+.+++...... ......+|. ..|++
T Consensus 253 ~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~---~~v~~ 329 (611)
T 1nr0_A 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHN---KAITA 329 (611)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCS---SCEEE
T ss_pred EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC---CCEEE
Confidence 99999999999999998865432110 011335676 78999
Q ss_pred EEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecC---------------------------------------------
Q 007306 461 IQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP--------------------------------------------- 494 (608)
Q Consensus 461 v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~--------------------------------------------- 494 (608)
++|+|+|++|++ +.|+.|++||+.+++....+..
T Consensus 330 l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~ 409 (611)
T 1nr0_A 330 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK 409 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEE
T ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeee
Confidence 999999999999 5899999999987654332200
Q ss_pred ------------C-----------------------CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEece
Q 007306 495 ------------D-----------------------KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 539 (608)
Q Consensus 495 ------------~-----------------------~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 539 (608)
. .|...+.+++|+|||++|++|+.|+.|++||+.++....... .
T Consensus 410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~ 488 (611)
T 1nr0_A 410 LSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-I 488 (611)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-E
T ss_pred cCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-c
Confidence 0 012457789999999999999999999999998775432211 1
Q ss_pred eeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 540 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 540 ~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
+| ... +.+++|+| |+.+||+++.|++|++|++.+
T Consensus 489 -----~h-~~~--v~~v~fsp-dg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 489 -----VH-PAE--ITSVAFSN-NGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp -----EC-SSC--EEEEEECT-TSSEEEEEETTSCEEEEEGGG
T ss_pred -----CC-CCc--eEEEEECC-CCCEEEEEcCCCCEEEEEcCC
Confidence 34 333 45999999 899999999999999999987
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-43 Score=348.39 Aligned_cols=282 Identities=17% Similarity=0.233 Sum_probs=248.5
Q ss_pred CCCCCcEEEEEEeeC----CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE
Q 007306 256 NSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 331 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~----g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (608)
.+|.+.|++++|+|+ +.+|++|+.|++|+||++...... ..|. ..+|...|.+++
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~----------~~~~-----------l~gh~~~v~~~~ 87 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD----------LQWS-----------LEGHQLGVVSVD 87 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------EEEE-----------ECCCSSCEEEEE
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------eeee-----------eccCCCCEEEEE
Confidence 349999999999985 679999999999999998665431 0111 127999999999
Q ss_pred Ee--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccE
Q 007306 332 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 407 (608)
Q Consensus 332 ~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 407 (608)
|+ +.++++++ |++|++||+.+++.+..+..+...+.+++|+|++ .|++|+.|+.|++||+.+++....+..|...|
T Consensus 88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 88 ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167 (321)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence 99 78999999 9999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCC
Q 007306 408 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTL 486 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~ 486 (608)
.+++|+|++++|++++.||.|++||+++++ .+. ...+|. .+|.+++|+|++++|+++ .|+.|++||++++
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~~~-----~~~-~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIATGK-----LLH-TLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEE-EEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 999999999999999999999999999843 344 455676 689999999999999995 8999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEE
Q 007306 487 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 566 (608)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 566 (608)
+....+.. |...|.+++|+|++++|++|+.|+.|++||+.+++.+..+. +| ...++ +++|+| ++.+|
T Consensus 239 ~~~~~~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-------~h-~~~v~--~v~~s~-~g~~l 305 (321)
T 3ow8_A 239 NLAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF-------DH-QDQVW--GVKYNG-NGSKI 305 (321)
T ss_dssp CEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-------CC-SSCEE--EEEECT-TSSEE
T ss_pred ceeEEEcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc-------CC-CCcEE--EEEECC-CCCEE
Confidence 98888764 68999999999999999999999999999999999888875 44 34455 999999 79999
Q ss_pred EEEeCCCcEEEEeC
Q 007306 567 ALGLTNGRVHVIEP 580 (608)
Q Consensus 567 as~s~Dg~v~iW~~ 580 (608)
++++.||+|+|||+
T Consensus 306 ~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 306 VSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTCCEEEEEC
T ss_pred EEEeCCCeEEEEeC
Confidence 99999999999996
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1e-42 Score=347.96 Aligned_cols=281 Identities=14% Similarity=0.179 Sum_probs=246.9
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+.|++++|+|+|++|++|+.||+|++||..++... .... .|...|.+++|+
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~---------------------~~~~--~~~~~v~~~~~s~~ 108 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV---------------------HAIP--LRSSWVMTCAYAPS 108 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------EEEE--CSSSCEEEEEECTT
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc---------------------eEee--cCCccEEEEEECCC
Confidence 349999999999999999999999999999988766541 1111 588999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCC----ceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEE
Q 007306 334 GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 408 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 408 (608)
+++|++++ |+.|++|++.++ +....+.+|...|.++.|++++.+++++.|+.|++||+.+++.+..+.+|...|.
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 88999999 999999999875 3566778999999999999988888999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc
Q 007306 409 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 487 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~ 487 (608)
+++|+|+++++++|+.|+.|++||++++. .+. .+.+|. ..|++++|+|++++|++ +.|+.|++||+++++
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-----~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~ 259 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGM-----CRQ-TFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCS-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCe-----eEE-EEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence 99999999999999999999999998843 333 455777 78999999999999999 589999999999998
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 567 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 567 (608)
.+..+....+...|.+++|+|+|++|++|+.||.|++||+.+++....+. || ...+. +++|+| ++.+||
T Consensus 260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-------~h-~~~v~--~~~~s~-dg~~l~ 328 (340)
T 1got_B 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-------GH-DNRVS--CLGVTD-DGMAVA 328 (340)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEECT-TSSCEE
T ss_pred EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-------cC-CCcEE--EEEEcC-CCCEEE
Confidence 88777644445689999999999999999999999999999998887776 55 34444 999999 899999
Q ss_pred EEeCCCcEEEEe
Q 007306 568 LGLTNGRVHVIE 579 (608)
Q Consensus 568 s~s~Dg~v~iW~ 579 (608)
||+.||+|+|||
T Consensus 329 s~s~D~~i~iWd 340 (340)
T 1got_B 329 TGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSCEEEEC
T ss_pred EEcCCccEEecC
Confidence 999999999997
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.1e-43 Score=352.76 Aligned_cols=314 Identities=14% Similarity=0.127 Sum_probs=226.9
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC------CCcEEEEecCCC
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ------TATHKLWKWQSN 291 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~------dg~i~iw~~~~~ 291 (608)
+.+++.++.+ +.+.....|++.. ... ..|...|++++|||||++|++|+. |+.+++|+..++
T Consensus 13 ~g~~~~~~~~-~g~~~~~~w~~p~----~~p-------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 13 LGTENLYFQS-NGSSKGSAWGRPV----TAP-------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp ---------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred CCccceEEec-CCCccccccCCCC----CCc-------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCC
Confidence 4555555443 4467788898752 111 239999999999999999999998 455665555443
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccc--cCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceee----EecCCC
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDI--AADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLA----TFANPP 363 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~----~~~~~~ 363 (608)
.. ..... ..+|...|.+++|+ +..+++++ ||+|++||+.+++... ...+|.
T Consensus 81 ~~---------------------~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~ 139 (357)
T 4g56_B 81 AP---------------------NESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHD 139 (357)
T ss_dssp -----------------------CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCS
T ss_pred Cc---------------------ceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCC
Confidence 22 11100 01488899999999 66677777 9999999999877543 334789
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecc
Q 007306 364 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCS 441 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~ 441 (608)
..|++++|+|++ +|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++. .+++++.|+.|++||+++++....
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 999999999999 999999999999999999999999999999999999999875 789999999999999998543221
Q ss_pred cceeeeeccCCCCccceEEEEEcCCC-CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEc
Q 007306 442 KFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCK 518 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~ 518 (608)
.. ...+. ..+.+++|+|++ .+|++ +.|+.|++||+++++++..+.. |...|++++|+|++ ++|++|+.
T Consensus 220 ~~----~~~~~---~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 220 ID----FCASD---TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp CC----CTTCC---SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCEEEEEECSSSSCCEEEEET
T ss_pred ee----ecccc---ccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeEEEEEEcCCCCCEEEEEeC
Confidence 11 12333 579999999985 56777 4889999999999999888864 68999999999987 58999999
Q ss_pred CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 519 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 519 dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
|++|+|||+.+++.+..+ +| ...| ++++|+|.|+.+||||+.||+|++|++.+..
T Consensus 291 D~~i~iwd~~~~~~~~~~--------~H-~~~V--~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDL--------SH-RDFV--TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp TSCEEEECTTSCEEEEEC--------CC-SSCE--EEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred CCEEEEEECCCCcEeEEC--------CC-CCCE--EEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999999999876543 45 3344 4999999778999999999999999997643
No 7
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.8e-42 Score=367.42 Aligned_cols=328 Identities=18% Similarity=0.247 Sum_probs=278.6
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..+.|+|||+++++++.|+.|++||.. .+... .+. +|...|.+++|+|+|++|++++.|+.+++|+......
T Consensus 225 ~~~~~s~dg~~l~~~~~d~~i~~w~~~-----~~~~~-~~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~ 296 (577)
T 2ymu_A 225 RGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQ-TLT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL 296 (577)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-----SCEEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCC-----CCEEE-EEe--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEE
Confidence 456899999999999999999999975 23332 243 4999999999999999999999999999999754322
Q ss_pred eee--------------------ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEc
Q 007306 294 SLE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 350 (608)
Q Consensus 294 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~ 350 (608)
... ..+.+..+++|+.....+.... +|...|.+++|+ ++++++++ |+.|++||.
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT---GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe---CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 110 1223345789998776654432 699999999999 88999999 999999995
Q ss_pred CCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEE
Q 007306 351 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 429 (608)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 429 (608)
+++.+..+.+|...|.+++|+|++ .|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 578888999999999999999999 9999999999999995 5788888999999999999999999999999999999
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
+||... ..+. ...+|. ..|++++|+|++++|++ +.|+.|++||. +++++..+.. |...|++++|+|
T Consensus 452 ~w~~~~------~~~~-~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~ 518 (577)
T 2ymu_A 452 LWNRNG------QLLQ-TLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSP 518 (577)
T ss_dssp EEETTS------CEEE-EEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECT
T ss_pred EEECCC------CEEE-EEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC--CCCCEEEEEEcC
Confidence 999754 3344 455676 78999999999999999 58999999996 7888888864 689999999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEe
Q 007306 509 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 579 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~ 579 (608)
+|++|++++.||.|++||. +++.+..+. || ...|. +++|+| |+++|+|++.|++|++||
T Consensus 519 dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h-~~~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWNR-NGQLLQTLT-------GH-SSSVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSEEEEECT-TSCEEEEEE-------CC-SSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 9999999999999999996 577777765 55 34444 999999 899999999999999997
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-43 Score=349.50 Aligned_cols=288 Identities=14% Similarity=0.160 Sum_probs=230.5
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCC-----CeeeeccccCCCCCCeEEEEE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS-----KLVMTNDIAADPKDSISCFAL 332 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~v~~ 332 (608)
|...|.+++|+|||++|++++ |+++++||... .+|+... +...... .+...|.+++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~--------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~ 90 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL--------------WLFKDPCAAPNEGFCSAGV---QTEAGVADLTW 90 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE--------------EEESSGGGTTCGGGCSEEE---EESSCEEEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeecee--------------eeeccccccCCcceeeeee---ccCCCEEEEEE
Confidence 678899999999999888877 78888887321 1222111 1111100 36678999999
Q ss_pred e-CCEEEEEe-CCcEEEEEcCCCceeeEe----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccc
Q 007306 333 R-GSHLFSAS-GGKISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 405 (608)
Q Consensus 333 s-~~~l~s~~-d~~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 405 (608)
+ ++.|++|+ ||+|++||+.+++.+..+ .+|...|++++|+|++ +|++|+.|++|++||+.+++++..+.+|..
T Consensus 91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 9 88899999 999999999998765443 4899999999999999 999999999999999999999999999999
Q ss_pred cEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceecccceeeee-ccCCCCccceEEEEEcCC-CCEEEEE-eCCcEEEE
Q 007306 406 RITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVY 481 (608)
Q Consensus 406 ~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~-~~~l~~~-~d~~i~iw 481 (608)
.|.+++|+|++ .++++++.|++|++||+++++.. ..+. ..+. ..+.+++|+|+ +++++++ .|+.|++|
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA-----SQIGCSAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE-----EECC----C---CCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred ceEEEEecCCCCCceeeecccccccccccccccee-----eeeecceee---ccceeeeecCCCCcceEEeccCCcEEEE
Confidence 99999999987 47899999999999999985432 2121 1232 46899999996 4667774 78999999
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec
Q 007306 482 EAPTLNHTSQLVPDKMDLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 482 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
|+++++++.++.. |...|++++|+|++ ++|++|+.|++|+|||+.++++.. +. || ...|+ +++|+|
T Consensus 243 d~~~~~~~~~~~~--h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H-~~~V~--~v~~sp 309 (344)
T 4gqb_B 243 DTKSTSCVLSSAV--HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AH-RDFVR--DATWSP 309 (344)
T ss_dssp ESCC--CCEEEEC--CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CC-SSCEE--EEEECS
T ss_pred ECCCCcEEEEEcC--CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CC-CCCEE--EEEEeC
Confidence 9999999988874 68999999999998 589999999999999999987543 22 55 33444 999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 561 LEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
++..+|+|||.||+|++|++.+..
T Consensus 310 ~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 310 LNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp SSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCeEEEEEcCCCeEEEEECCCCC
Confidence 545678899999999999997753
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-42 Score=343.33 Aligned_cols=299 Identities=16% Similarity=0.159 Sum_probs=238.5
Q ss_pred CCCC-cEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 257 SFGG-RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 257 ~h~~-~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
+|.+ .|++++|+|+|++||+|+.|++|+||++.++... .......+|...|.+++|+
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~--------------------~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI--------------------CKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE--------------------EEEEECSSCSSCEEEEEECTT
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce--------------------eeeeeccccCCcEEEEEECCC
Confidence 3877 9999999999999999999999999998765421 0011112699999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCC--ceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEeeCcccc
Q 007306 334 GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKGHQNR 406 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~---~~~~~~~~~~~ 406 (608)
+++|++++ |+++++||+.++ +++..+.+|...|.+++|+|++ +|++|+.|++|++||+.++. .+..+.+|...
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 88999999 999999999876 4678889999999999999999 99999999999999998763 45677889999
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCC
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 485 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~ 485 (608)
|.+++|+|++++|++++.|+.|++||.++++. .+.. ...+|. ..|.+++|+|+|++|++ +.|++|++||...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~-~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCA-TLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEE-EecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecccc
Confidence 99999999999999999999999999987432 1223 456777 79999999999999999 5899999999632
Q ss_pred C---------------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCcee--EEEeceeeccCCCcc
Q 007306 486 L---------------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR--CQINLTAYAQPGTIS 548 (608)
Q Consensus 486 ~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~--~~~~~~~~~~~g~~~ 548 (608)
. +++..+.. .|...|.+++|+|++..|++++.|+.|++|+...+... ..+........+| .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~ 303 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-S 303 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-S
T ss_pred CCCCccceeeccCCccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-c
Confidence 2 22333432 36889999999999999999999999999998765311 1111111122355 3
Q ss_pred cccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 549 LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 549 ~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
.. +.+++|+|+++.+||||+.||+|++|++.++++.
T Consensus 304 ~~--V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 304 QD--VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SC--EEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred Cc--EeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 33 4499999943469999999999999999987754
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-41 Score=334.82 Aligned_cols=281 Identities=17% Similarity=0.275 Sum_probs=240.8
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.+.|++++|+|+|++|++++.||+|++||+.++.. +.... +|..+|.+++|+ ++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------VRSIQ--VTETPVRAGKFIARKN 68 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEEEGGGT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce---------------------eEEee--ccCCcEEEEEEeCCCC
Confidence 999999999999999999999999999998876654 11111 588999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~ 412 (608)
+|++|+ |++|++||+.+++.+..+.+|...|.+++|+|++ +|++|+.|++|++||++++ .....+.+|...|.+++|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEE
Confidence 999999 9999999999999999999999999999999999 9999999999999999887 455778899999999999
Q ss_pred eC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC--CCCEEEE-EeCCcEEEEECCCCce
Q 007306 413 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNH 488 (608)
Q Consensus 413 ~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~-~~d~~i~iwd~~~~~~ 488 (608)
+| ++..|++|+.|++|++||+++.. .......+|. ..+..+.|+| ++.+|++ +.|+.|++||++++++
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSS-----CSEEEECCCT---TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCC-----ccceeccCCc---CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc
Confidence 99 67899999999999999998743 2222444554 5788999987 6788988 5899999999999999
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEE
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIA 567 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~la 567 (608)
+.++.. |...|.+++|+|++++|++|+.||.|++||+.+++....+.. | ...++ +++|+|+++. ++|
T Consensus 221 ~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-------~-~~~~~--~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 221 VATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV-------G-LERSW--CIATHPTGRKNYIA 288 (304)
T ss_dssp EEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-------S-SSSEE--EEEECTTCGGGCEE
T ss_pred ceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC-------C-CccEE--EEEECCCCCceEEE
Confidence 988874 689999999999999999999999999999999998888763 2 33455 9999994433 578
Q ss_pred EEeCCCcEEEEeCCC
Q 007306 568 LGLTNGRVHVIEPLE 582 (608)
Q Consensus 568 s~s~Dg~v~iW~~~~ 582 (608)
+|++|| +.+|++..
T Consensus 289 sg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 289 SGFDNG-FTVLSLGN 302 (304)
T ss_dssp EEETTE-EEEEECC-
T ss_pred EecCCc-eEEEEecc
Confidence 877665 77888765
No 11
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-41 Score=339.47 Aligned_cols=280 Identities=14% Similarity=0.200 Sum_probs=243.8
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
+|.+.|++++|+|++++|++|+.||+|++||..+...... .. .|...|.+++|+ +
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~-----~~~~~v~~~~~sp~g 118 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA------------------VT-----MPCTWVMACAYAPSG 118 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE------------------EE-----CSSSCCCEEEECTTS
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE------------------Ee-----cCCCCEEEEEECCCC
Confidence 3999999999999999999999999999998766653110 11 477889999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCCC------ceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcccc
Q 007306 335 SHLFSAS-GGKISIFSLETF------QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
.++++++ |+.+++|++... .....+..|...|.+++|+|++ .|++++.|++|++||+.+++.+..+.+|...
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD 198 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence 8999999 999999998643 3456677899999999999999 9999999999999999999999999999999
Q ss_pred EEEEEEeC--CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEEC
Q 007306 407 ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 483 (608)
Q Consensus 407 v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~ 483 (608)
|.+++|+| ++++|++|+.||+|++||+++++ ++. ...+|. ..|++++|+|++.+|++ +.|+.|++||+
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-----~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~ 269 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-----CVQ-AFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDL 269 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-----EEE-EecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 99999987 57899999999999999999843 344 456777 78999999999999999 58999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
++++.+..+....+...+.+++|+|+|++|++|+.|+.|++||+.+++.+..+. || ...+ .+++|+| |+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-------~h-~~~v--~~l~~sp-dg 338 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-------GH-ENRV--STLRVSP-DG 338 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-------CC-SSCE--EEEEECT-TS
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-------CC-CCcE--EEEEECC-CC
Confidence 998887777654445689999999999999999999999999999998877765 44 3344 4999999 89
Q ss_pred CEEEEEeCCCcEEEEe
Q 007306 564 NRIALGLTNGRVHVIE 579 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~ 579 (608)
.+|++|+.||+|+||+
T Consensus 339 ~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 339 TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTSEEEEEC
T ss_pred CEEEEEcCCCCEEecC
Confidence 9999999999999996
No 12
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.4e-41 Score=336.88 Aligned_cols=276 Identities=16% Similarity=0.216 Sum_probs=238.7
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.|+||+++|++++.||+|++||... +.... .++. |...|.+++|+|+|++|++|+.|+.+++|++.+....
T Consensus 60 ~~~~s~d~~~l~s~s~Dg~v~iWd~~~----~~~~~-~~~~--~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 60 AMHWGTDSRLLLSASQDGKLIIWDSYT----TNKVH-AIPL--RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTT----CCEEE-EEEC--SSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCC----CCcce-Eeec--CCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 457999999999999999999999874 33222 2433 8999999999999999999999999999998765320
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEc
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL 372 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 372 (608)
. ..... + .+|...|.++.|+ +..+++++ |++|++||+.+++.+..+.+|...|.+++|+
T Consensus 133 ~-----------------~~~~~-~-~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 193 (340)
T 1got_B 133 V-----------------RVSRE-L-AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193 (340)
T ss_dssp C-----------------EEEEE-E-ECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred c-----------------eeEEE-e-cCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEEC
Confidence 0 01111 1 1699999999999 77899999 9999999999999999999999999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee-cc
Q 007306 373 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TG 450 (608)
Q Consensus 373 ~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~ 450 (608)
|++ .+++|+.|+.|++||++++..+..+.+|...|.+++|+|++++|++|+.||+|++||+++++. +.... ..
T Consensus 194 ~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~-----~~~~~~~~ 268 (340)
T 1got_B 194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----LMTYSHDN 268 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EEEECCTT
T ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE-----EEEEccCC
Confidence 999 999999999999999999999999999999999999999999999999999999999988542 22111 12
Q ss_pred CCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 451 LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
+. ..|.+++|+|+|++++++ .|+.|++||+.+++.+..+.. |...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 269 ~~---~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~--h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 269 II---CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CC---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cc---cceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeec--CCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 22 479999999999999994 889999999999998888864 789999999999999999999999999997
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-41 Score=349.21 Aligned_cols=383 Identities=18% Similarity=0.271 Sum_probs=246.7
Q ss_pred ceecchhhhhHHHHHHHHHhhhcHHHHHHHHHhhcCcccc--HHHHHHHHhcCCHHHHHHHHhhcccCCCCCcceeehhH
Q 007306 6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLSAFTKLDDSNHSKKMFFE 83 (608)
Q Consensus 6 ~~~~~~~~~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~ 83 (608)
|.++..|..|++|+|+|||+|+||.+++.+|++|+++.++ ...+...++++.|..++++-+++..+...
T Consensus 1 ~~~~~~q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~l~~~~~~~~~~--------- 71 (410)
T 1vyh_C 1 MVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESK--------- 71 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcchhhhhhchhhhhhhheeeHHHHHHHHHHH---------
Confidence 5677888888999999999999999999999999999875 56778889999999888864443111100
Q ss_pred HhhhHHHHHHhhcCCCccchhhhhchhhhhhhhhccCcccccccCCCccchHHHHHHHHhhcceeeeeeecccCCCCCcc
Q 007306 84 LRKHKYCEALCRQQKLPSDFAERAHLFDDFKVLVERNPMLQDKLKFPSMDKSRLLSLIKQIMDWWVPYCINVMPNANNET 163 (608)
Q Consensus 84 i~~~~~le~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~ 163 (608)
.- + +.+.+. ...+.+.. .....| .+.
T Consensus 72 -----~~---------------------------~----~~~~~~--~~~~~~~~---~~~~~~--------~~~----- 97 (410)
T 1vyh_C 72 -----LN---------------------------E----AKEEFT--SGGPLGQK---RDPKEW--------IPR----- 97 (410)
T ss_dssp -------------------------------------------------------------CCC--------CCC-----
T ss_pred -----HH---------------------------H----HHHHHh--ccCCcccc---CCcccc--------ccC-----
Confidence 00 0 000000 00000000 000000 111
Q ss_pred ccccCCceeeeccccccccccCCCCCCcccccccCCcccccccccCCCCceeEeecCCCCeEEEeecCCeEEEeeccCCC
Q 007306 164 ISLKDFPTVSNLRYASSILTDKPNQEGRPLDASSGDDSNDSSCFNDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLIN 243 (608)
Q Consensus 164 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~ 243 (608)
......+.+|.. ....+.|+|+++++++|+.||+|++||+..
T Consensus 98 --------------------------~~~~~~l~gh~~----------~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-- 139 (410)
T 1vyh_C 98 --------------------------PPEKYALSGHRS----------PVTRVIFHPVFSVMVSASEDATIKVWDYET-- 139 (410)
T ss_dssp --------------------------SSCSCEEECCSS----------CEEEEEECSSSSEEEEEESSSCEEEEETTT--
T ss_pred --------------------------CCceEeecccCC----------cEEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Confidence 011122233322 233457999999999999999999999984
Q ss_pred CCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCC
Q 007306 244 EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP 323 (608)
Q Consensus 244 ~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (608)
+.+.. ++. +|.+.|++++|+|+|++|++|+.||+|++||+.+.+. +... .+|
T Consensus 140 --~~~~~-~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~---------------------~~~~--~~h 191 (410)
T 1vyh_C 140 --GDFER-TLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC---------------------IRTM--HGH 191 (410)
T ss_dssp --CCCCE-EEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCE---------------------EECC--CCC
T ss_pred --CcEEE-EEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---------------------eEEE--cCC
Confidence 33332 243 4999999999999999999999999999998766543 2211 169
Q ss_pred CCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE
Q 007306 324 KDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 399 (608)
Q Consensus 324 ~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~ 399 (608)
...|.+++|+ +++|++|+ |++|++||+.++.++..+.+|...|.++.++|++ .|++|+.|+.|++||+.+++....
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~ 271 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 271 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeE
Confidence 9999999999 88999999 9999999999999999999999999999999999 999999999999999999999999
Q ss_pred eeCccccEEEEEEeCC--------------------CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceE
Q 007306 400 LKGHQNRITCLAYSLS--------------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVN 459 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~--------------------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 459 (608)
+.+|...|.+++|+|+ +.+|++|+.|++|++||++++. ++. ...+|. ..|+
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~-----~~~-~~~~h~---~~v~ 342 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-----CLM-TLVGHD---NWVR 342 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE-----EEE-EEECCS---SCEE
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc-----eEE-EEECCC---CcEE
Confidence 9999999999999996 6789999999999999999843 444 455777 7899
Q ss_pred EEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 460 HIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 460 ~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
+++|+|+|++|++ +.|+.|++||+.+++++..+.. |...|++++|+|++.+|++|+.||.|++|+++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC--CSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999 5899999999999999888864 68999999999999999999999999999863
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-41 Score=334.62 Aligned_cols=293 Identities=16% Similarity=0.185 Sum_probs=243.9
Q ss_pred CCCCCcEEEEEEeeCC-CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-
Q 007306 256 NSFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s- 333 (608)
.+|.+.|++++|+|++ ++|++|+.|++|++|++...... .+..+..+ .+|...|.+++|+
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~--~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSF--KGHSHIVQDCTLTA 75 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEE--ECCSSCEEEEEECT
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEE--eCCcccEEEEEECC
Confidence 3499999999999965 89999999999999997543220 01111111 1799999999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEE
Q 007306 334 -GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCL 410 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~ 410 (608)
+++|++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||++ +..+..+.+|...|.++
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 88999999 9999999999999999999999999999999999 99999999999999997 56778888999999999
Q ss_pred EEeCC------CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEEC
Q 007306 411 AYSLS------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEA 483 (608)
Q Consensus 411 ~~~~~------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~ 483 (608)
.|+|. +..+++++.|+.|++||+++.+ ... ...+|. ..|.+++|+|+|++|++ +.|+.|++||+
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~-~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-----IEA-DFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNL 225 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTE-----EEE-EECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcch-----hhe-eecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 99985 4589999999999999998843 223 455777 79999999999999999 58999999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
.+++.+..+.. ...|.+++|+|++.+|++++. +.+++|++..+.....+......... .+...+.+++|+| |+
T Consensus 226 ~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp-dg 298 (319)
T 3frx_A 226 AAKKAMYTLSA---QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSK--AAEPHAVSLAWSA-DG 298 (319)
T ss_dssp TTTEEEEEEEC---CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCG--GGCCCEEEEEECT-TS
T ss_pred CCCcEEEEecC---CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCcccccccc--CcCcceeEEEECC-CC
Confidence 99999888863 578999999999999998875 55999999988777666432111001 1122355999999 89
Q ss_pred CEEEEEeCCCcEEEEeCCCC
Q 007306 564 NRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~ 583 (608)
.+|++|+.||.|+||++.++
T Consensus 299 ~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 299 QTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEeecCceEEEEEEeec
Confidence 99999999999999999764
No 15
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-41 Score=333.12 Aligned_cols=274 Identities=18% Similarity=0.199 Sum_probs=240.0
Q ss_pred eEeecCC----CCeEEEeecCCeEEEeeccCCCCCCce-eeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 007306 215 ESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 289 (608)
Q Consensus 215 ~~~~s~d----g~~l~~~~~d~~i~iWd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~ 289 (608)
.++|+|+ +.+|++|+.|++|++|++.. ..+ ....+. +|...|.+++|+|++.++++++.|++|++||+.
T Consensus 37 ~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~----~~~~~~~~l~--gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 37 SVAWGTNKKENSETVVTGSLDDLVKVWKWRD----ERLDLQWSLE--GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp EEEEC-------CEEEEEETTSCEEEEEEET----TEEEEEEEEC--CCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred EEEEecCCCCCCCEEEEEcCCCCEEEEECCC----CCeeeeeeec--cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 4567774 67999999999999999974 322 233454 499999999999999999999999999999987
Q ss_pred CCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCe
Q 007306 290 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 366 (608)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v 366 (608)
+++... .+. .|...+.+++|+ +++|++++ |+.|++|++.+++....+..+...|
T Consensus 111 ~~~~~~----------~~~-------------~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 111 NGKQIK----------SID-------------AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167 (321)
T ss_dssp TTEEEE----------EEE-------------CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred CCCEEE----------EEe-------------CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence 765411 111 477888999999 88999999 9999999999999999999999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccccee
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
.+++|+|++ +|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++ .+.
T Consensus 168 ~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~-----~~~ 242 (321)
T 3ow8_A 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN-----LAG 242 (321)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC-----EEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc-----eeE
Confidence 999999999 99999999999999999999999999999999999999999999999999999999998843 333
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEE
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKV 524 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~i 524 (608)
...+|. ..|.+++|+|++++|++ +.|+.|++||+.+++++.++.. |...|.+++|+|++++|++++.||.|++
T Consensus 243 -~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 243 -TLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD--HQDQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp -EECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred -EEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC--CCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 456777 78999999999999999 5899999999999999988864 6899999999999999999999999999
Q ss_pred EeCC
Q 007306 525 FDTS 528 (608)
Q Consensus 525 wd~~ 528 (608)
||..
T Consensus 317 wd~p 320 (321)
T 3ow8_A 317 YDCP 320 (321)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9964
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.4e-40 Score=325.66 Aligned_cols=284 Identities=19% Similarity=0.249 Sum_probs=244.1
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+.|++++|+|+|++|++++.||.|++|+..+++. .... .+|...|.+++|+
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~---------------------~~~~--~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF---------------------EKTI--SGHKLGISDVAWSSD 76 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------------EEEE--CCCSSCEEEEEECTT
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc---------------------chhh--ccCCCceEEEEEcCC
Confidence 34999999999999999999999999999998766543 1111 1699999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
+++|++++ |+.|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+++++.+..+..|...|.+++
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 88999999 9999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceee
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~ 490 (608)
|+|+++++++++.||.|++||+++++ .+..+...+. ..+..++|+|+++++++ +.|+.|++||+.+++.+.
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASGQ-----CLKTLIDDDN---PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCC-----EEEEECCSSC---CCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCc-----eeeEEeccCC---CceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE
Confidence 99999999999999999999998843 3332334444 57999999999999999 589999999999999988
Q ss_pred eecCCCCCCCeEEEEEe-cCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 491 QLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
.+..+..........++ +++.+|++|+.||.|++||+.+++.+..+. || ... +.+++|+| ++.+++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-------~h-~~~--v~~~~~~p-~~~~l~s~ 297 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-------GH-TDV--VISTACHP-TENIIASA 297 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-------CC-SSC--EEEEEECS-SSSEEEEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-------cc-CCc--EEEEeecC-cCCceEEE
Confidence 88754322223333444 688999999999999999999999888776 44 333 44999999 79999999
Q ss_pred e--CCCcEEEEeCC
Q 007306 570 L--TNGRVHVIEPL 581 (608)
Q Consensus 570 s--~Dg~v~iW~~~ 581 (608)
+ .|++|++|+..
T Consensus 298 ~~~~d~~i~~W~~d 311 (312)
T 4ery_A 298 ALENDKTIKLWKSD 311 (312)
T ss_dssp ECTTTCCEEEEECC
T ss_pred EccCCccEEEecCC
Confidence 7 69999999964
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.5e-40 Score=352.43 Aligned_cols=333 Identities=17% Similarity=0.232 Sum_probs=276.4
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..+.++|+++++++++.|+.|++||... ..... +.+ |...|.+++|+|+|++|++++.|+.|++|+......
T Consensus 184 ~~~~~~~~~~~l~~~~~d~~v~~w~~~~----~~~~~--~~~--~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~ 255 (577)
T 2ymu_A 184 WGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQT--LTG--HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 255 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECTTS----CEEEE--EEC--CSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred eeeeecCCCCEEEEEcCCCEEEEEeCCC----cEEEE--Eec--CCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEE
Confidence 3467999999999999999999999752 22332 433 999999999999999999999999999999754322
Q ss_pred eee--------------------ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEc
Q 007306 294 SLE--------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSL 350 (608)
Q Consensus 294 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~ 350 (608)
... ..+.+..+++|+.... ...... +|...|.+++|+ ++.+++++ |+.|++||.
T Consensus 256 ~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~~~~~--~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EEEEEe--cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 110 1223345689996544 333222 799999999999 78999999 999999997
Q ss_pred CCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEE
Q 007306 351 ETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 429 (608)
Q Consensus 351 ~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 429 (608)
. +..+..+.+|...+.+++|+|++ .+++|+.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 333 ~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 333 N-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp T-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred C-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 6 55667788999999999999999 9999999999999995 5788888999999999999999999999999999999
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
+||... ..+. ...+|. ..|++++|+|++++|++ +.|+.|++||. +++.+..+.. |...|.+++|+|
T Consensus 411 ~~~~~~------~~~~-~~~~~~---~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~--~~~~v~~~~~sp 477 (577)
T 2ymu_A 411 LWNRNG------QLLQ-TLTGHS---SSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSP 477 (577)
T ss_dssp EECTTC------CEEE-EEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECT
T ss_pred EEeCCC------CEEE-EecCCC---CCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC--CCCCEEEEEEcC
Confidence 999654 3344 455677 78999999999999999 58999999997 6777777764 689999999999
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 509 DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
++++|++++.|+.|++||. +++.+..+. || ... +++++|+| |+.+||+++.||.|++||. +++.
T Consensus 478 d~~~las~~~d~~i~iw~~-~~~~~~~~~-------~h-~~~--v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~ 541 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNR-NGQLLQTLT-------GH-SSS--VRGVAFSP-DGQTIASASDDKTVKLWNR-NGQL 541 (577)
T ss_dssp TSCEEEEEETTSEEEEEET-TSCEEEEEE-------CC-SSC--EEEEEECT-TSSCEEEEETTSEEEEECT-TSCE
T ss_pred CCCEEEEEeCCCEEEEEcC-CCCEEEEEe-------CC-CCC--EEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCE
Confidence 9999999999999999995 577777765 44 334 44999999 8999999999999999996 4443
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-41 Score=345.22 Aligned_cols=291 Identities=14% Similarity=0.212 Sum_probs=245.2
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+.|++++|+|+|++|++|+.||+|+|||..++... .... +|...|.+++|+
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~---------------------~~~~--~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT---------------------HAIK--LHCPWVMECAFAPN 119 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE---------------------EEEE--CCCTTCCCCEECTT
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc---------------------eEEe--cCCCCEEEEEECCC
Confidence 349999999999999999999999999999988766541 1111 588999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc-------eeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEe---
Q 007306 334 GSHLFSAS-GGKISIFSLETFQ-------TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--- 400 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~--- 400 (608)
+++|++|+ |+.+++||+.+.. ....+.+|.+.|.++.|+|++ .|++|+.|++|++||+.+++.+..+
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~ 199 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE 199 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc
Confidence 88999999 9999999986532 345677999999999999986 8999999999999999999988877
Q ss_pred --eCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCC
Q 007306 401 --KGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG 476 (608)
Q Consensus 401 --~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~ 476 (608)
.+|...|.+++|+| +++++++|+.|++|++||++... ..+. ...+|. +.|.+++|+|++++|+++ .|+
T Consensus 200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~----~~~~-~~~~h~---~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS----RAVR-TYHGHE---GDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC----CCCE-EECCCS---SCCCEEEECTTSSEEEEECSSS
T ss_pred cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC----cceE-EECCcC---CCeEEEEEecCCCeEEEEcCCC
Confidence 57899999999987 88999999999999999998522 3344 556787 799999999999999995 899
Q ss_pred cEEEEECCCCceeeeecCCC-----CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccc
Q 007306 477 QIDVYEAPTLNHTSQLVPDK-----MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 477 ~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 551 (608)
+|++||+++++.+..+.... +...|.+++|+|+|++|++|+.||.|++||+.+++....+.. ...+| ...+
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~h-~~~v 347 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT---LQNSH-EGRI 347 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC---SCSSC-CCCC
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec---ccCCC-CCce
Confidence 99999999999887775431 123589999999999999999999999999999887766531 11244 4445
Q ss_pred ccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 552 YPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 552 ~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
. +++|+| |+.+|+||+.||+|+||++...+
T Consensus 348 ~--~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 348 S--CLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp C--EEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred E--EEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 5 999999 89999999999999999997654
No 19
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.8e-40 Score=327.22 Aligned_cols=315 Identities=15% Similarity=0.168 Sum_probs=261.7
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
++++|||+.++++..++.+..|.... ........ +|.+.|++++|+|++++|++++ ||.|++|++.++....
T Consensus 15 ~~~s~dg~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 15 FHVTADGQMQPVPFPPDALIGPGIPR-----HARQINTL--NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEECSSSCEEECCCCTTSSSSTTCCS-----EEEEEEEE--CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred EEECCCCCEEEeecCCCcEeccccCC-----ccccceec--cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 47999999999998888777776542 22222222 3999999999999999999998 9999999987765311
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc--eeeEecCCCCCeEEEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFI 370 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~ 370 (608)
. -.... ..+|...|.+++|+ +++|++++ |+.|++||+.+++ ....+..|...+.+++
T Consensus 87 ~---------------~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~ 148 (337)
T 1gxr_A 87 P---------------VSQLD---CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148 (337)
T ss_dssp C---------------SEEEE---CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEE
T ss_pred e---------------eeccc---ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEE
Confidence 0 00010 11488999999999 78999999 9999999999877 6677788999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeec
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT 449 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 449 (608)
|+|++ .+++++.|+.|++||+++++.+..+.+|...|.+++|+|+++++++++.||.|++||+++++. +...
T Consensus 149 ~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-----~~~~-- 221 (337)
T 1gxr_A 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ-----LQQH-- 221 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEE--
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce-----Eeee--
Confidence 99999 999999999999999999999999999999999999999999999999999999999998543 2211
Q ss_pred cCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 450 GLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 450 ~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
.+. ..+.+++|+|++++++++ .++.|++||+.+++.. .+. .|...|.+++|+|++++|++++.||.|++||+.
T Consensus 222 ~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 222 DFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 233 579999999999999995 7899999999887754 332 468999999999999999999999999999999
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+++...... | ... +.+++|+| ++++|++++.||.|++|++.
T Consensus 296 ~~~~~~~~~--------~-~~~--v~~~~~s~-~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 296 YGASIFQSK--------E-SSS--VLSCDISV-DDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TCCEEEEEE--------C-SSC--EEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred CCeEEEEec--------C-CCc--EEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence 998775432 2 333 44999999 79999999999999999973
No 20
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-40 Score=338.82 Aligned_cols=322 Identities=17% Similarity=0.175 Sum_probs=263.5
Q ss_pred eeEeecCCCC-eEEEeecCCeEEEeec----cCCCCCC---ceeeEeecCC------CCCCcEEEEEEeeCCCEEEEEeC
Q 007306 214 RESTSLPDAD-SAVCAKSLEKSVNLKL----QLINEPS---ECRTLLLPDN------SFGGRVVRLIYSHSGDFLVALTQ 279 (608)
Q Consensus 214 ~~~~~s~dg~-~l~~~~~d~~i~iWd~----~~~~~~~---~~~~~~l~~~------~h~~~V~~~~fsp~g~~l~s~s~ 279 (608)
..+.|+|+|+ +|++++.||.|++|++ .++.... ....+..+-. +|.+.|++++|+|+|++|++++.
T Consensus 49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 128 (425)
T 1r5m_A 49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE 128 (425)
T ss_dssp SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence 3457999999 9999999999999999 6421000 1121111111 25789999999999999999999
Q ss_pred CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcee
Q 007306 280 TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL 356 (608)
Q Consensus 280 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~ 356 (608)
||.|++|+. ++.. ..... +|...|.+++|+ +++|++++ |+.|++||+.+++.+
T Consensus 129 dg~i~i~~~-~~~~---------------------~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 129 NGELRLWNK-TGAL---------------------LNVLN--FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp TSCEEEEET-TSCE---------------------EEEEC--CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCeEEEEeC-CCCe---------------------eeecc--CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 999999983 2222 11111 589999999999 88999999 999999999999999
Q ss_pred eEecCCCCC---------------eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEE
Q 007306 357 ATFANPPPI---------------ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVS 421 (608)
Q Consensus 357 ~~~~~~~~~---------------v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 421 (608)
..+..+... +.+++|+|++.+++++.++.|++||+.+++.+..+.+|...|.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 999887776 89999999888889999999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCC
Q 007306 422 SGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLP 500 (608)
Q Consensus 422 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 500 (608)
++.|+.|++||+++++ .+. ...+|. ..|.+++|+|++ ++++ +.|+.|++||+.+++.+..+.. |...
T Consensus 265 ~~~d~~i~i~d~~~~~-----~~~-~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~ 332 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGN-----SQN-CFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVP 332 (425)
T ss_dssp EETTSCEEEECSSSBS-----CSE-EECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCC
T ss_pred EcCCCEEEEEECCCCc-----cce-EecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCcc
Confidence 9999999999998843 333 344566 689999999999 7776 6899999999999998888864 5889
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEeCCCCc--------------------eeEEEeceeeccCCCccc-ccccEEEEEe
Q 007306 501 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLE--------------------LRCQINLTAYAQPGTISL-ELYPLVIAAH 559 (608)
Q Consensus 501 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~g~~~~-~v~~~~v~~s 559 (608)
+.+++|+|++++|++++.||.|++||+.+++ .+..+. +|... . +.+++|+
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--v~~~~~s 403 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-------SSQDNDY--IFDLSWN 403 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-------CTTCCCC--EEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-------CcccCCc--eEEEEcc
Confidence 9999999999999999999999999999887 555554 33222 3 4599999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 007306 560 PLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~ 581 (608)
| ++.+|++++.||.|++|++.
T Consensus 404 ~-~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 C-AGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp T-TSSEEEEEESSSCCEEEECC
T ss_pred C-CCceEEEEecCceEEEEeec
Confidence 9 79999999999999999985
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-40 Score=324.15 Aligned_cols=280 Identities=15% Similarity=0.224 Sum_probs=234.8
Q ss_pred eEeecCCC-CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 215 ESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 215 ~~~~s~dg-~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.+.|+|++ ++|++|+.|++|++|++.............+. +|...|.+++|+|+|++|++|+.|++|++||+.+++.
T Consensus 22 ~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~ 99 (319)
T 3frx_A 22 SLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK--GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGET 99 (319)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe--CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCe
Confidence 34789865 89999999999999998642111111122344 4999999999999999999999999999998877654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 370 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 370 (608)
..... +|...|.+++|+ +.+|++++ |++|++||+. ++++..+.+|...|.++.
T Consensus 100 ---------------------~~~~~--~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 100 ---------------------YQRFV--GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155 (319)
T ss_dssp ---------------------EEEEE--CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEE
T ss_pred ---------------------eEEEc--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEE
Confidence 11111 699999999999 88999999 9999999996 677888899999999999
Q ss_pred EcC------CC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 371 LLP------QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 371 ~~~------~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
|+| ++ .+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.||.|++||+.+++ .
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~-----~ 230 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKK-----A 230 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----E
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----E
Confidence 998 45 79999999999999999999999999999999999999999999999999999999999843 3
Q ss_pred eeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCC------CCCCCeEEEEEecCCCEEEEEE
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD------KMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
+. ....+ ..|.+++|+|++.+++++.++.+++|++..+..+..+... .+...+.+++|+|||++|++|+
T Consensus 231 ~~-~~~~~----~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 231 MY-TLSAQ----DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp EE-EEECC----SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred EE-EecCC----CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 33 22233 4799999999999999988888999999887776665432 2356799999999999999999
Q ss_pred cCCeEEEEeCCCC
Q 007306 518 KSGHVKVFDTSTL 530 (608)
Q Consensus 518 ~dg~i~iwd~~~~ 530 (608)
.||.|+|||+.++
T Consensus 306 ~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 306 TDNVIRVWQVMTA 318 (319)
T ss_dssp TTSCEEEEEEEEC
T ss_pred cCceEEEEEEeec
Confidence 9999999998764
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.7e-41 Score=341.97 Aligned_cols=291 Identities=13% Similarity=0.120 Sum_probs=237.4
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.|+|+|++|++|+.||+|++||... +.... .+.. |...|.+++|+|+|++|++|+.|+.+++|++.+....
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~~~----~~~~~-~~~~--h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNALT----SQKTH-AIKL--HCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTT----TEEEE-EEEC--CCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCC----Cccce-EEec--CCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 457999999999999999999999974 33332 2433 8999999999999999999999999999998654320
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEe-----cCCCCC
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF-----ANPPPI 365 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~-----~~~~~~ 365 (608)
.+.........+|...|.++.|. +..|++|+ |++|++||+.+++.+..+ .+|...
T Consensus 144 ----------------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 144 ----------------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp ----------------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSC
T ss_pred ----------------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccC
Confidence 00000000112799999999998 45799999 999999999999998877 578899
Q ss_pred eEEEEEcC-CC-eEEEEeCCCcEEEEeCC-CCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 366 ATYFILLP-QD-LFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 366 v~~~~~~~-~~-~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
|.+++|++ ++ .|++|+.|+.|++||++ .++.+..+.+|...|.+++|+|++++|++|+.||+|++||+++++.....
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 99999987 66 99999999999999998 45778889999999999999999999999999999999999986532211
Q ss_pred ceee-eeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecC--CCCCCCeEEEEEecCCCEEEEEEc
Q 007306 443 FLHS-FQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVP--DKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 443 ~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.... ....+. ..|++++|+|+|++++++ .||.|++||+.+++.+..+.. ..|...|.+++|+|+|++|++|+.
T Consensus 288 ~~~~~~~~~~~---~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 288 NREPDRNDNEL---PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp CCCCSSSCCSS---CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECT
T ss_pred ccccccccccc---CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeC
Confidence 1110 001111 358899999999999996 899999999998888766632 357899999999999999999999
Q ss_pred CCeEEEEeCCCCc
Q 007306 519 SGHVKVFDTSTLE 531 (608)
Q Consensus 519 dg~i~iwd~~~~~ 531 (608)
||.|++|++...+
T Consensus 365 D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 365 DKNLKIWAFSGHR 377 (380)
T ss_dssp TSCEEEEECCSSS
T ss_pred CCCEEEEecCCCc
Confidence 9999999998764
No 23
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=7e-40 Score=328.93 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=235.7
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.|+||+++|++|+.||+|++||... ..... .+.. |...|.+++|+|+|.+|++|+.|+.+++|++......
T Consensus 69 ~~~~s~d~~~l~s~s~Dg~v~vWd~~~----~~~~~-~~~~--~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 69 CMDWCKDKRRIVSSSQDGKVIVWDSFT----TNKEH-AVTM--PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTT----CCEEE-EEEC--SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCC----CCcce-EEec--CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 458999999999999999999999874 32222 2332 8889999999999999999999999999998654320
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 371 (608)
.. ......+. +|...|.+++|+ +..|++++ |++|++||+.+++.+..+.+|...|.+++|
T Consensus 142 ~~------------~~~~~~~~-----~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~ 204 (354)
T 2pbi_B 142 NM------------AAKKKSVA-----MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDL 204 (354)
T ss_dssp CS------------GGGCEEEE-----ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred cc------------cccceeee-----ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEE
Confidence 00 00000111 599999999999 77999999 999999999999999999999999999999
Q ss_pred cC--CC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 372 LP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 372 ~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
+| ++ .|++|+.||.|++||+++++++..+.+|...|.+++|+|++.+|++++.|++|++||+++.+. +....
T Consensus 205 ~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~-----~~~~~ 279 (354)
T 2pbi_B 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-----VAIYS 279 (354)
T ss_dssp CCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EEEEC
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----EEEEc
Confidence 87 46 999999999999999999999999999999999999999999999999999999999988532 22111
Q ss_pred -ccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 449 -TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 449 -~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
..+. ..+.+++|+|++++++++ .|+.|++||+.+++.+..+. +|...|.+++|+|+|++|++|+.||.|+||+
T Consensus 280 ~~~~~---~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 280 KESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTCC---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcc---cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 1122 468999999999999995 89999999999999888775 4799999999999999999999999999996
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9e-40 Score=327.14 Aligned_cols=294 Identities=13% Similarity=0.125 Sum_probs=232.1
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..++|+|||++||+|+.|++|++||+.. ...........+|...|.+++|+|+|++|++|+.|+++++|+...+..
T Consensus 20 ~~l~~sp~g~~las~~~D~~i~iw~~~~----~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 20 WFLAWNPAGTLLASCGGDRRIRIWGTEG----DSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF 95 (345)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEEEEET----TEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEEcCC----CcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe
Confidence 3468999999999999999999999974 322211111245999999999999999999999999999998765532
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC---ceeeEecCCCCCeE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIAT 367 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~---~~~~~~~~~~~~v~ 367 (608)
.+... ..+|...|.+++|+ +++|++|+ |++|++||+.++ .++..+.+|...|.
T Consensus 96 -------------------~~~~~--~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 96 -------------------ECVTT--LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp -------------------EEEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred -------------------EEEEE--ccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 11111 11699999999999 88999999 999999999875 34667889999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCc--eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCcee-----
Q 007306 368 YFILLPQD-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL----- 439 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~----- 439 (608)
+++|+|++ +|++|+.|+.|++||..+++ +...+.+|...|.+++|+|+|++|++++.|++|++||.......
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~ 234 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC 234 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcccee
Confidence 99999999 99999999999999998875 44678899999999999999999999999999999997432211
Q ss_pred -----cccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce----eee---ecCCCCCCCeEEEEE
Q 007306 440 -----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH----TSQ---LVPDKMDLPITYATY 506 (608)
Q Consensus 440 -----~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~----~~~---~~~~~~~~~v~~~~~ 506 (608)
...++.+....|. ..|.+++|+|++..+++ +.|+.|++|+...+.. ... .....|...|.+++|
T Consensus 235 ~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 311 (345)
T 3fm0_A 235 SGSDPSWKCICTLSGFHS---RTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW 311 (345)
T ss_dssp C---CEEEEEEEECSSCS---SCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE
T ss_pred eccCCccceeEEecCCCC---CcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE
Confidence 0122332223355 68999999999999998 6899999999875431 111 112357899999999
Q ss_pred ecCC-CEEEEEEcCCeEEEEeCCCCceeEE
Q 007306 507 SCDG-KCIYVSCKSGHVKVFDTSTLELRCQ 535 (608)
Q Consensus 507 s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~ 535 (608)
+|++ .+|++|+.||.|++|++.+++....
T Consensus 312 ~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 312 NPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp CSSSTTEEEEEETTSCEEEEEECC------
T ss_pred eCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 9998 5999999999999999998875543
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=327.79 Aligned_cols=280 Identities=15% Similarity=0.102 Sum_probs=225.4
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccC--------CCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEE
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQL--------INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLW 286 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~--------~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw 286 (608)
.+.|+|||++|++++ |+++++||... ......+... ..|...|.+++|+|++ .|++|+.||+|+||
T Consensus 35 ~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 35 AARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAG----VQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp EEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEE----EEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred EEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeee----eccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 347999999999887 77888887421 0001111111 1157789999999996 58899999999999
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCC
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP 363 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~ 363 (608)
|+.+++.... ... ...+|...|++++|+ +++|++|+ |++|++||+.+++++..+.+|.
T Consensus 109 d~~~~~~~~~------------------~~~-~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 109 ELDENETLIV------------------SKF-CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp EECTTSSCEE------------------EEE-EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred eccCCCceeE------------------eec-cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC
Confidence 9987764211 000 011699999999999 88999999 9999999999999999999999
Q ss_pred CCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEee--CccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCce
Q 007306 364 PIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 364 ~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
..|.+++|+|++ .|++|+.|++|++||+++++....+. .|...+.+++|+| +++++++|+.||+|++||++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-- 247 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-- 247 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--
Confidence 999999999998 78999999999999999999887764 3566799999999 4678999999999999999984
Q ss_pred ecccceeeeeccCCCCccceEEEEEcCCC-CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC-EEEE
Q 007306 439 LCSKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYV 515 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 515 (608)
.++. .+.+|. ..|++++|+|++ ++|++ +.|++|++||+.+++++. +. +|...|++++|+|+++ +|++
T Consensus 248 ---~~~~-~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 248 ---SCVL-SSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp ----CCE-EEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEE
T ss_pred ---cEEE-EEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEE
Confidence 3444 456777 799999999998 56777 589999999999887654 32 5899999999999986 5778
Q ss_pred EEcCCeEEEEeCCCCc
Q 007306 516 SCKSGHVKVFDTSTLE 531 (608)
Q Consensus 516 g~~dg~i~iwd~~~~~ 531 (608)
|+.||+|++|++.+..
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 9999999999998754
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.5e-40 Score=329.44 Aligned_cols=282 Identities=11% Similarity=0.057 Sum_probs=225.8
Q ss_pred eEeecCCCCeEEEeec------CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEec
Q 007306 215 ESTSLPDADSAVCAKS------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 288 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~------d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~ 288 (608)
.++|||||++|++++. |+.|++|+...+......... . .+|...|.+++|+|++. +++++.||+|+|||+
T Consensus 47 ~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~-~--~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~ 122 (357)
T 4g56_B 47 AVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTA-G--VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEI 122 (357)
T ss_dssp EEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSE-E--EECSSCEEEEEEETTTE-EEEEETTSCEEEC--
T ss_pred EEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecc-c--CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeec
Confidence 4589999999999997 778999988654322222211 1 23899999999999986 567889999999998
Q ss_pred CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCC
Q 007306 289 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 365 (608)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 365 (608)
.+++.... ... ...+|...|.+++|+ +++|++++ |+.|++||+.+++.+..+.+|...
T Consensus 123 ~~~~~~~~---------------~~~----~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~ 183 (357)
T 4g56_B 123 LEKESLLV---------------NKF----AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE 183 (357)
T ss_dssp ------CC---------------CCE----EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred cccceeEE---------------Eee----ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC
Confidence 77654110 000 011699999999999 88999999 999999999999999999999999
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEee--CccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceec
Q 007306 366 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLC 440 (608)
Q Consensus 366 v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~ 440 (608)
|++++|+|++ .+++++.|+.|++||+++++....+. .|...+.+++|+|+ +.+|++|+.|+.|++||++++
T Consensus 184 v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---- 259 (357)
T 4g56_B 184 VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---- 259 (357)
T ss_dssp EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG----
T ss_pred EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC----
Confidence 9999999988 88999999999999999988776554 46778999999997 568999999999999999984
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCC-CEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEE
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQ-IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC 517 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~ 517 (608)
..+. ...+|. ..|++++|+|++ ++|++ +.|++|+|||+++++++..+ +|...|++++|+| ++.+|++++
T Consensus 260 -~~~~-~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 260 -DSAQ-TSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp -GGCE-EECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred -cEeE-EEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 3444 455676 789999999997 56777 58999999999999887665 4799999999998 899999999
Q ss_pred cCCeEEEEeCCCCc
Q 007306 518 KSGHVKVFDTSTLE 531 (608)
Q Consensus 518 ~dg~i~iwd~~~~~ 531 (608)
.||.|++|++.+..
T Consensus 332 ~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 332 WDHKVLHHHLPSEG 345 (357)
T ss_dssp TTSCEEEEECC---
T ss_pred CCCeEEEEECCCCC
Confidence 99999999997643
No 27
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-41 Score=346.94 Aligned_cols=330 Identities=11% Similarity=0.070 Sum_probs=263.2
Q ss_pred eecCCCC-eEEEe----------ecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEE
Q 007306 217 TSLPDAD-SAVCA----------KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKL 285 (608)
Q Consensus 217 ~~s~dg~-~l~~~----------~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~i 285 (608)
+|+|+|+ +++++ +.|+.|++||+........... ..|...|.+++|+|++++|++++.||.|++
T Consensus 19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-----LQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-----CCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-----EecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 6999997 99999 8899999999985321111221 238999999999999999999999999999
Q ss_pred EecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCc------e
Q 007306 286 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQ------T 355 (608)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~------~ 355 (608)
|++.+... ........ .+|...|.+++|+ +++|++++ |+.|++||+.+++ .
T Consensus 94 w~~~~~~~-----------------~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 94 YSTNEANN-----------------AINSMARF--SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp ECCSSTTS-----------------CCCEEEEC--CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC
T ss_pred eecccccc-----------------cccchhhc--cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc
Confidence 99876211 00011111 1699999999999 56899999 9999999999876 3
Q ss_pred eeE---ecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEEeeCc------cccEEEEEEeCCC-CEEEEEc
Q 007306 356 LAT---FANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKLKGH------QNRITCLAYSLSL-NVLVSSG 423 (608)
Q Consensus 356 ~~~---~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~s~~ 423 (608)
... +..|...|.+++|+|+ + .+++++.|+.|++||+++++.+..+..+ ...|.+++|+|++ .++++++
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 333 3578899999999999 5 9999999999999999999999888776 7899999999997 6899999
Q ss_pred CCC---cEEEEECCCCceecccceeeeec-cCCCCccceEEEEEcC-CCCEEEE-EeCCcEEEEECCCCceeeeecCCCC
Q 007306 424 ADA---QLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM 497 (608)
Q Consensus 424 ~d~---~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp-~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~ 497 (608)
.|+ .|++||++++. ..+. ... +|. ..|.+++|+| ++++|++ +.|+.|++||+++++++..+.. |
T Consensus 235 ~d~~~~~i~~~d~~~~~----~~~~-~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~ 304 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNAN----TPLQ-TLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--R 304 (416)
T ss_dssp CCSSSCCCCEEETTSTT----SCSB-CCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--S
T ss_pred CCCCCceEEEEeCCCCC----CCcE-EeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--C
Confidence 998 99999998842 2333 344 666 7899999999 8999998 5899999999999999888864 6
Q ss_pred CCCeEEEEEecCC-CEEEEEEcCCeEEEEeCCCCceeEEEec---------eeeccCCC------------------ccc
Q 007306 498 DLPITYATYSCDG-KCIYVSCKSGHVKVFDTSTLELRCQINL---------TAYAQPGT------------------ISL 549 (608)
Q Consensus 498 ~~~v~~~~~s~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~g~------------------~~~ 549 (608)
...|.+++|+|++ .+|++++.||.|++|++.++........ ..+...+. +..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 8899999999999 8999999999999999988764332210 00000010 122
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 550 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 550 ~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
. +.+++|+| |+.+||+++.||.|+||++.+.
T Consensus 385 ~--~~~~~~s~-dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 P--SPAAHWAF-GGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp C--SCCCEEET-TTEEECBCTTSSCBCCBCCCCC
T ss_pred C--ccceEEee-CCeEEEEeCCCCeEEEEEeccC
Confidence 2 33899999 8999999999999999999875
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=323.24 Aligned_cols=290 Identities=16% Similarity=0.131 Sum_probs=223.9
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
+|.++|++++|+|+ +|++|+.|++|++|++..+.. .........+|...|.+++|+ +
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------~~~~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------TLIDVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------EEEEEECTTCCCSCEEEEEECTTS
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------EEEEEEecCCccCCEEEEEECCCC
Confidence 39999999999998 899999999999999865432 111111111499999999999 8
Q ss_pred CEEEEEe-CCcEEEEEcCC-------CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC----ceEEEee
Q 007306 335 SHLFSAS-GGKISIFSLET-------FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK----KTKAKLK 401 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~----~~~~~~~ 401 (608)
++|++++ |++|++||+.. .+.+..+.+|...|.+++|+|++ +|++|+.|++|++||++.. +++..+.
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 8999999 99999999853 45677888999999999999999 9999999999999999432 5677888
Q ss_pred CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC--CCEEEE-EeCCcE
Q 007306 402 GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IHEGQI 478 (608)
Q Consensus 402 ~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~~-~~d~~i 478 (608)
+|...|.+++|+|++.+|++++.|++|++||..++.. .++. ...+|. +.|.+++|+|+ +..|++ +.|++|
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~-~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~v 223 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVA-VLNGHE---GTVWSSDFDKTEGVFRLCSGSDDSTV 223 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEE-EECCCS---SCEEEEEECCSSSSCEEEEEETTSCE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEE-EccCCC---CcEEEEEecCCCCeeEEEEEeCCCeE
Confidence 9999999999999999999999999999999876421 2344 556787 79999999999 678888 589999
Q ss_pred EEEECCCC--------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccc
Q 007306 479 DVYEAPTL--------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 550 (608)
Q Consensus 479 ~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 550 (608)
++||+.++ .+...+.. .|...|.+++|++++ +|++++.||.|++|+..+++...... ...+|....
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~----~~~~h~~~~ 297 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAK----RALCHGVYE 297 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEE----ESCTTTTSC
T ss_pred EEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEec----cccccccce
Confidence 99998654 23333332 378999999999665 89999999999999998774221111 011443324
Q ss_pred cccEEEEEecC-CCCEEEEEeCCCcEEEEeCCC
Q 007306 551 LYPLVIAAHPL-EPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 551 v~~~~v~~sp~-d~~~las~s~Dg~v~iW~~~~ 582 (608)
+. +++|+|. ++.+||+|+.||+|+||++.+
T Consensus 298 v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 298 IN--VVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 44 9999994 478999999999999999865
No 29
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.1e-39 Score=324.31 Aligned_cols=293 Identities=16% Similarity=0.190 Sum_probs=233.1
Q ss_pred CCCCcEEEEEE-----ee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEE
Q 007306 257 SFGGRVVRLIY-----SH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 330 (608)
Q Consensus 257 ~h~~~V~~~~f-----sp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 330 (608)
||.+.|++++| ++ ++++|++|+.|++|++||+...... ...+..... ..+|...|.++
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------~~~~~~~~~--l~~h~~~V~~~ 82 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------GYFGIPHKA--LTGHNHFVSDL 82 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------SBSEEEEEE--ECCCSSCEEEE
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------cccccccch--hccCCCceEEE
Confidence 49999999999 76 9999999999999999998655320 001111111 11799999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee---Cc
Q 007306 331 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK---GH 403 (608)
Q Consensus 331 ~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~---~~ 403 (608)
+|+ +.++++++ |++|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+... ...... +|
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~ 161 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENH 161 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSC
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCC
Confidence 999 88999999 9999999999999999999999999999999999 9999999999999999843 333333 68
Q ss_pred cccEEEEEEeCCC----------CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-
Q 007306 404 QNRITCLAYSLSL----------NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 472 (608)
Q Consensus 404 ~~~v~~~~~~~~~----------~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~- 472 (608)
...|.+++|+|++ .++++++.|+.|++||... .... ...+|. ..|.+++|+|+|++|++
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~-~~~~h~---~~v~~~~~s~~g~~l~sg 231 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF------QIRY-TFKAHE---SNVNHLSISPNGKYIATG 231 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT------EEEE-EEECCS---SCEEEEEECTTSSEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC------ceeE-EEcCcc---ccceEEEECCCCCEEEEE
Confidence 8999999999987 7899999999999999543 2233 455777 78999999999999999
Q ss_pred EeCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeE--EEecee----eccCC
Q 007306 473 IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC--QINLTA----YAQPG 545 (608)
Q Consensus 473 ~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~--~~~~~~----~~~~g 545 (608)
+.|+.|++||+.+ ......+. +...|.+++|+|++.++++| .|+.|++|++.+++... .+.... ....|
T Consensus 232 s~dg~v~iwd~~~~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 232 GKDKKLLIWDILNLTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp ETTCEEEEEESSCCSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred cCCCeEEEEECCCCcccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 5899999999954 44444442 35679999999999988755 58889999998876554 222110 00113
Q ss_pred CcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 546 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 546 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
| ... +.+++|+| ++.+|++|+.||.|++|++.+++
T Consensus 308 ~-~~~--v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 308 K-NPQ--CTSLAWNA-LGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp S-CCC--EEEEEECS-SSCCEEEEETTSEEEEEEEEEEE
T ss_pred C-CCc--eEEEEECC-CCCeEEEecCCceEEEEEEEccC
Confidence 3 222 55999999 79999999999999999987653
No 30
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-39 Score=358.54 Aligned_cols=353 Identities=11% Similarity=0.049 Sum_probs=256.8
Q ss_pred CCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 007306 210 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 289 (608)
Q Consensus 210 ~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~ 289 (608)
......++|+|||++||+|+.||+|++|+... .++.. . ..|..+|++++|+| |++|++++.|++|++||+.
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~----~~~~~-~---~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ----VEVVI-K---LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTT----CEEEE-E---CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC----cEEEE-E---cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 33445568999999999999999999999863 33332 1 23788999999999 8899999999999999998
Q ss_pred CCcceee--------------------ecccceeeEEeeCCCCeeeec---------cccCCCCCCeEEEEEe---CCEE
Q 007306 290 SNKQSLE--------------------EENVNMESQLYQPSSKLVMTN---------DIAADPKDSISCFALR---GSHL 337 (608)
Q Consensus 290 ~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~v~~v~~s---~~~l 337 (608)
+++.... ..+.+..+++||..++.+... ....+|...|.+++|+ +..+
T Consensus 88 ~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 88 SQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp TCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 8764322 123345679999998876421 1223699999999999 3588
Q ss_pred EEEe-CCcEEEEEcCCCceeeEecCC------------------CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 338 FSAS-GGKISIFSLETFQTLATFANP------------------PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
++|+ |+.| +||+.+++.+..+..| ...|.+++|+|+| +|++|+.||.|++||+++++++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 8888 9999 9999999998888765 4679999999999 9999999999999999887665
Q ss_pred EE--ee---C-------------ccccEEEEEEe----------------------------------------------
Q 007306 398 AK--LK---G-------------HQNRITCLAYS---------------------------------------------- 413 (608)
Q Consensus 398 ~~--~~---~-------------~~~~v~~~~~~---------------------------------------------- 413 (608)
.. +. . |...|.+++|+
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 42 10 1 12345555553
Q ss_pred --------------------------------------------------------------------------------
Q 007306 414 -------------------------------------------------------------------------------- 413 (608)
Q Consensus 414 -------------------------------------------------------------------------------- 413 (608)
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence
Q ss_pred --------------------------------------CCCCEEEEEcCCCcEEEEECCCCceecccceee-----eecc
Q 007306 414 --------------------------------------LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----FQTG 450 (608)
Q Consensus 414 --------------------------------------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~~ 450 (608)
|++++|++|+.|++|++||+.++.......+.. +..+
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 222333333334444444433321100000000 0014
Q ss_pred CCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc------------------------------------------
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN------------------------------------------ 487 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~------------------------------------------ 487 (608)
|. ..|.+++|+|+|++|++ +.|++|++||+.+++
T Consensus 487 h~---~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (902)
T 2oaj_A 487 KE---LAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ 563 (902)
T ss_dssp SS---CCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred CC---CceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence 44 68999999999999999 589999999997652
Q ss_pred ---eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeecc-CCCcccccccEEEEEe----
Q 007306 488 ---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ-PGTISLELYPLVIAAH---- 559 (608)
Q Consensus 488 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~g~~~~~v~~~~v~~s---- 559 (608)
++..+. .|.+.|++++||||| +||+|+.|++|+|||++++..+...... .. .|| ... |++++|+
T Consensus 564 g~~~~~~l~--~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~--~~~~gh-~~~--V~sv~Fs~~~~ 635 (902)
T 2oaj_A 564 GFMPSTAVH--ANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIR--EISGAQ-SAC--VTCIEFVIMEY 635 (902)
T ss_dssp EEEEEEEEC--CCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGG--GTCSSC-CCC--EEEEEEEEEEC
T ss_pred ccceeEEEE--cCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehh--Hhcccc-ccc--eEEEEEEEEec
Confidence 234443 378999999999999 9999999999999999888765432211 11 144 333 5599999
Q ss_pred -cCCC---CEEEEEeCCCcEEEEeC---CCCc
Q 007306 560 -PLEP---NRIALGLTNGRVHVIEP---LESE 584 (608)
Q Consensus 560 -p~d~---~~las~s~Dg~v~iW~~---~~~~ 584 (608)
| |+ .+|++|+.||+|++|++ .+|+
T Consensus 636 ~~-Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 636 GD-DGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp TT-SSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred CC-CCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 8 54 89999999999999999 5554
No 31
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-38 Score=324.71 Aligned_cols=304 Identities=13% Similarity=0.129 Sum_probs=237.9
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.+.|++++|||||++||+|+ ++.+++|++.++........... ...++ ..........+...|.+++|+ ++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~--~~~~~---~~~~~~~~~~~~~~v~~v~~s~dg~ 136 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA--ANKDP---ENLNTSSSPSSDLYIRSVCFSPDGK 136 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------------CCCCBEEEEEECTTSS
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccc--ccccc---ccccccccCCCceeEEEEEECCCCC
Confidence 899999999999999999876 78999999988765322000000 00000 000000000244569999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 413 (608)
+|++|+ |+.|++||+.+++.+..+.+|...|.+++|+|++ .|++|+.|++|++||+++++....+. +...+.+++|+
T Consensus 137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 999999 9999999999999999999999999999999999 99999999999999999998887776 56779999999
Q ss_pred C-CCCEEEEEcCCCcEEEEECCCCceeccccee-eeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc---
Q 007306 414 L-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--- 487 (608)
Q Consensus 414 ~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~--- 487 (608)
| +++++++++.|+.|++||++++......... ....+|. ..|.+++|+|+|++|++ +.|+.|++||+++..
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9 8999999999999999999885432211100 0124566 78999999999999999 589999999997542
Q ss_pred ---------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEE
Q 007306 488 ---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA 558 (608)
Q Consensus 488 ---------~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 558 (608)
+...+. +|...|.+++|+|++.+|++|+.|+.|++||..+++.+..+. || ...+. +++|
T Consensus 293 ~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-------~h-~~~v~--~v~~ 360 (393)
T 1erj_A 293 DSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-------GH-RNSVI--SVAV 360 (393)
T ss_dssp --------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-------CC-SSCEE--EEEE
T ss_pred cccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-------CC-CCCEE--EEEe
Confidence 333443 468899999999999999999999999999999999887776 55 33444 8888
Q ss_pred ecC-----CCCEEEEEeCCCcEEEEeCCCC
Q 007306 559 HPL-----EPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 559 sp~-----d~~~las~s~Dg~v~iW~~~~~ 583 (608)
+|. ++++||||+.||+|+||++...
T Consensus 361 ~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 361 ANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred cCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 762 4789999999999999998654
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.9e-39 Score=333.00 Aligned_cols=321 Identities=11% Similarity=0.016 Sum_probs=253.6
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
.|+|+|+++++++.|+.|++||+... ..... +. +| ..+....|+|+|++|++|+.||.|++||+.++..
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~----~~~~~-~~--~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--- 131 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIR----DGSKM-LK--RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ--- 131 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSE----ETTTT-SC--SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE---
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccc----ceeeE-Ee--cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce---
Confidence 69999999999999999999999752 22211 21 13 4555567899999999999999999998765543
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP 373 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 373 (608)
.... .+|...|.+++|+ +++|++++ |+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus 132 ------------------~~~~--~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 132 ------------------REID--QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp ------------------EEET--TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred ------------------eeec--ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 2111 1699999999999 88999999 99999999999999999999999999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEEeeC---ccccEEEEE---------------------EeCCCCEEEEEcCCCcE
Q 007306 374 QD-LFAFGFDDSSILVHCPCTKKTKAKLKG---HQNRITCLA---------------------YSLSLNVLVSSGADAQL 428 (608)
Q Consensus 374 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~---------------------~~~~~~~l~s~~~d~~i 428 (608)
++ .|++++.|+.|++||+++++.+..+.. |...|.+++ |+|+++++++++.||.|
T Consensus 192 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 271 (420)
T 3vl1_A 192 RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVI 271 (420)
T ss_dssp TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCE
T ss_pred CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeE
Confidence 99 999999999999999999999888875 444555555 46889999999999999
Q ss_pred EEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC-EEEE-EeCCcEEEEECCCCce-eeeecCCCCCCCeEEEE
Q 007306 429 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLNH-TSQLVPDKMDLPITYAT 505 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~-~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~ 505 (608)
++||+++++ .+..+..+|. ..|.+++|+|+++ +|++ +.|+.|++||+++++. +..+.. .|...+.++.
T Consensus 272 ~i~d~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~~~ 342 (420)
T 3vl1_A 272 TVHNVFSKE-----QTIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLI-NEGTPINNVY 342 (420)
T ss_dssp EEEETTTCC-----EEEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEE-STTSCEEEEE
T ss_pred EEEECCCCc-----eeEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhc-cCCCCceEEE
Confidence 999998843 3333445566 6899999999998 8888 5889999999998754 566654 2577888885
Q ss_pred EecCCCEEEEEEcCCeEEEEeCCCCceeEEEe--ceeeccCCCcccccccEEEEEecCCCC---EEEEEeCCCcEEEEeC
Q 007306 506 YSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN--LTAYAQPGTISLELYPLVIAAHPLEPN---RIALGLTNGRVHVIEP 580 (608)
Q Consensus 506 ~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~--~~~~~~~g~~~~~v~~~~v~~sp~d~~---~las~s~Dg~v~iW~~ 580 (608)
.+++++|++++.||.|++|++........+. .......+| ...+. +++|+| ++. .+++++.+|.+.+|++
T Consensus 343 -~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~v~--~~~~s~-~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 343 -FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDAVS--QFCYVS-DDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp -EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCCCC--EEEEEC-CSSSSCEEEEEETTTEEEEEES
T ss_pred -eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccC-CcceE--EEEEcc-CCCCcceEEEEcCCceEEEEec
Confidence 4688999999999999999998743221111 000011133 33344 999999 677 6777788999999998
Q ss_pred CC
Q 007306 581 LE 582 (608)
Q Consensus 581 ~~ 582 (608)
..
T Consensus 418 ~~ 419 (420)
T 3vl1_A 418 SN 419 (420)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.8e-38 Score=314.49 Aligned_cols=277 Identities=15% Similarity=0.190 Sum_probs=224.2
Q ss_pred cC-CCCeEEEeecCCeEEEeeccCCCCCCc--eeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 219 LP-DADSAVCAKSLEKSVNLKLQLINEPSE--CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 219 s~-dg~~l~~~~~d~~i~iWd~~~~~~~~~--~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
++ |+++|++|+.|++|++||+........ .....+ .+|...|++++|+|++.++++|+.|++|++||+.+++.
T Consensus 35 ~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~-- 110 (343)
T 2xzm_R 35 ENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL--TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTT-- 110 (343)
T ss_dssp TTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEE--CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCE--
T ss_pred cCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchh--ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--
Confidence 55 999999999999999999975321111 112234 34999999999999999999999999999998876654
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEec---CCCCCeEEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA---NPPPIATYF 369 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~---~~~~~v~~~ 369 (608)
..... +|...|.+++|+ +++|++++ |++|++||+.. ....... .|...|.++
T Consensus 111 -------------------~~~~~--~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 111 -------------------YKRFV--GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp -------------------EEEEE--CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred -------------------EEEEc--CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence 11111 699999999999 88999999 99999999984 3333333 788899999
Q ss_pred EEcCCC-----------eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCce
Q 007306 370 ILLPQD-----------LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 370 ~~~~~~-----------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
+|+|++ ++++++.|+.|++|| .+++....+.+|...|.+++|+|+|++|++|+.||.|++||+....
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~- 246 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT- 246 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS-
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc-
Confidence 999873 699999999999999 4567778889999999999999999999999999999999995422
Q ss_pred ecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceee--eecC---------CCCCCCeEEEEEe
Q 007306 439 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS--QLVP---------DKMDLPITYATYS 507 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~--~~~~---------~~~~~~v~~~~~s 507 (608)
.... ... +. ..|.+++|+|++.+++++.|+.|++||+.+++... .+.. .+|...|.+++|+
T Consensus 247 ---~~~~-~~~-~~---~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 247 ---YPQR-EFD-AG---STINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp ---SCSE-EEE-CS---SCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred ---ccce-eec-CC---CcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 1222 121 22 46999999999999888899999999998776544 3321 1467889999999
Q ss_pred cCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 508 CDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
|+|++|++|+.||.|++|++.++.
T Consensus 319 p~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SSSCCEEEEETTSEEEEEEEEEEE
T ss_pred CCCCeEEEecCCceEEEEEEEccC
Confidence 999999999999999999987653
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.2e-38 Score=313.17 Aligned_cols=296 Identities=16% Similarity=0.199 Sum_probs=242.9
Q ss_pred eecCCCCCCcEEEEEEeeC-CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEE
Q 007306 252 LLPDNSFGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF 330 (608)
Q Consensus 252 ~l~~~~h~~~V~~~~fsp~-g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 330 (608)
+|. ||.+.|++++|+|+ +++|+|||.||+|+|||+.+.+.. .+.....+ .+|...|.++
T Consensus 33 tL~--GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l--~~h~~~V~~~ 92 (340)
T 4aow_A 33 TLK--GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRAL--RGHSHFVSDV 92 (340)
T ss_dssp EEC--CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEE--CCCSSCEEEE
T ss_pred EEC--CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEE--eCCCCCEEEE
Confidence 464 49999999999997 689999999999999998766431 11111111 1699999999
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE-EEeeCccc
Q 007306 331 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQN 405 (608)
Q Consensus 331 ~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~ 405 (608)
+|+ +++|++++ |+.|++|+...+........+...+....+++++ .|++|+.|+.+++||+...... ....+|..
T Consensus 93 ~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred EECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999 88999999 9999999999999988888899999999999999 9999999999999998866443 44567899
Q ss_pred cEEEEEEeCCC--CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEE
Q 007306 406 RITCLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYE 482 (608)
Q Consensus 406 ~v~~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd 482 (608)
.+.+++|++++ .++++++.|+.|++||+++++ .+. ...+|. +.|++++|+|++++|++ +.|+.|++||
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-----~~~-~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd 243 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-----LKT-NHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWD 243 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----eee-EecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999998864 578899999999999999843 333 456777 79999999999999999 5899999999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec--cCCCcccccccEEEEEec
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA--QPGTISLELYPLVIAAHP 560 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~g~~~~~v~~~~v~~sp 560 (608)
+++++.+..+.. ...+.+++|+|++.++ +++.|+.|++||++++.....+...... ..+| .. .+++++|+|
T Consensus 244 ~~~~~~~~~~~~---~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~--~v~~l~~s~ 316 (340)
T 4aow_A 244 LNEGKHLYTLDG---GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PP--QCTSLAWSA 316 (340)
T ss_dssp TTTTEEEEEEEC---SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC-CC--CEEEEEECT
T ss_pred eccCceeeeecC---CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC-CC--CEEEEEECC
Confidence 999999888853 6789999999988755 5557999999999998877776533211 1233 22 355999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 561 LEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
|+++|++|+.||.|+|||+.+|.
T Consensus 317 -dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 317 -DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp -TSSEEEEEETTSCEEEEEEEC--
T ss_pred -CCCEEEEEeCCCEEEEEeCCCcC
Confidence 89999999999999999999875
No 35
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.9e-38 Score=338.31 Aligned_cols=342 Identities=11% Similarity=0.090 Sum_probs=275.1
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCc-EEEEEEee--CCCEEEEEeCCCcEEEEecCCC-
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSH--SGDFLVALTQTATHKLWKWQSN- 291 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~-V~~~~fsp--~g~~l~s~s~dg~i~iw~~~~~- 291 (608)
+.|+|||+++++++ ++.|++||+.++..+..... .+. +|.+. |++++|+| +|++|++++.||.|++||+.++
T Consensus 24 ~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~-~~~--~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~ 99 (615)
T 1pgu_A 24 LSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV-QFT--GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 99 (615)
T ss_dssp CEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE-EEC--TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred EEECCCCCEEEEec-CCeEEEEECCCCCCccccce-EEe--cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCc
Confidence 47999999999998 88999999985211112322 243 49999 99999999 9999999999999999999644
Q ss_pred -------cceeee---------------------cccc----eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC-E
Q 007306 292 -------KQSLEE---------------------ENVN----MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-H 336 (608)
Q Consensus 292 -------~~~~~~---------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~-~ 336 (608)
...... .... ..+.+|+ .+....... +|...|.+++|+ ++ .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 100 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVS--GHSQRINACHLKQSRPMR 175 (615)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECC--SCSSCEEEEEECSSSSCE
T ss_pred ccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeee--cCCccEEEEEECCCCCcE
Confidence 111110 0001 3456666 344333322 699999999999 54 8
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCC---CeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEEEe-e---Ccccc
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPP---IATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKAKL-K---GHQNR 406 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~-~-~l~~~~~d~~i~vwd~~~~~~~~~~-~---~~~~~ 406 (608)
+++++ |+.|++||+.+++.+..+.+|.. .|.+++|+|+ + .+++++.|+.|++||+.+++.+..+ . +|...
T Consensus 176 l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred EEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCc
Confidence 99999 99999999999999999999999 9999999999 8 9999999999999999999999988 6 89999
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc----------------------------------------ee-
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF----------------------------------------LH- 445 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----------------------------------------~~- 445 (608)
|.+++|+ +++++++++.|+.|++||+++++...... +.
T Consensus 256 v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~ 334 (615)
T 1pgu_A 256 IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKT 334 (615)
T ss_dssp EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEE
T ss_pred eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEE
Confidence 9999999 99999999999999999998643211000 00
Q ss_pred --------------------------------------------------------------------------------
Q 007306 446 -------------------------------------------------------------------------------- 445 (608)
Q Consensus 446 -------------------------------------------------------------------------------- 445 (608)
T Consensus 335 ~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 414 (615)
T 1pgu_A 335 ISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASA 414 (615)
T ss_dssp ECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEE
T ss_pred EeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEE
Confidence
Q ss_pred -------------------------------------------------------------------eeeccCCCCccce
Q 007306 446 -------------------------------------------------------------------SFQTGLVPETTIV 458 (608)
Q Consensus 446 -------------------------------------------------------------------~~~~~~~~~~~~v 458 (608)
....+|. ..|
T Consensus 415 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---~~v 491 (615)
T 1pgu_A 415 NNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR---AKP 491 (615)
T ss_dssp CSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCS---SCE
T ss_pred cCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCcc---Cce
Confidence 0011222 678
Q ss_pred EEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec----------CCCEEEEEEcCCeEEEEeC
Q 007306 459 NHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC----------DGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 459 ~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~sg~~dg~i~iwd~ 527 (608)
++++|+|++++|++ +.|+.|++||+.+++.+..+.. .|...|++++|+| ++++|++|+.||.|++||+
T Consensus 492 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~ 570 (615)
T 1pgu_A 492 SYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 570 (615)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred EEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeec-CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence 99999999999999 4899999999999999887754 2689999999999 9999999999999999999
Q ss_pred CCC-ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 528 STL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 528 ~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
.++ +.+..+. +| ... +.+++|+| ++. |++++.||.|++|++.+
T Consensus 571 ~~~~~~~~~~~-------~h-~~~--v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 571 KRPMKIIKALN-------AH-KDG--VNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp SCTTCCEEETT-------SS-TTC--EEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred CCCceechhhh-------cC-ccc--eEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 998 5565544 44 334 44999999 788 99999999999999875
No 36
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.3e-38 Score=307.92 Aligned_cols=274 Identities=12% Similarity=0.155 Sum_probs=230.0
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..+.|+|||++|++++.||+|++||+.+ +.... .+.. |..+|.+++|+|++++|++|+.|++|++||+.+++.
T Consensus 17 ~~~~fsp~~~~l~s~~~dg~v~lWd~~~----~~~~~-~~~~--~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 17 KGIDFHPTEPWVLTTLYSGRVELWNYET----QVEVR-SIQV--TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (304)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTT----TEEEE-EEEC--CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCC----CceeE-Eeec--cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence 3458999999999999999999999974 33322 2433 899999999999999999999999999999877654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC-ceeeEecCCCCCeEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYF 369 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~-~~~~~~~~~~~~v~~~ 369 (608)
.. .+. +|...|.+++|+ +++|++|+ |++|++||+.++ .....+.+|...|.++
T Consensus 90 ~~----------~~~-------------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 90 VV----------DFE-------------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp EE----------EEE-------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred EE----------EEe-------------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 11 111 699999999999 88999999 999999999887 5567788999999999
Q ss_pred EEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEee-CccccEEEEEEeC--CCCEEEEEcCCCcEEEEECCCCceecccce
Q 007306 370 ILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFL 444 (608)
Q Consensus 370 ~~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 444 (608)
+|+| ++ .|++|+.|++|++||+.++.....+. +|...+..+.|+| ++.+|++++.|++|++||++++ .++
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~-----~~~ 221 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----SCV 221 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT-----EEE
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC-----ccc
Confidence 9999 45 99999999999999998877665554 4668899999987 7789999999999999999984 344
Q ss_pred eeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC--EEEEEEcCCe
Q 007306 445 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGH 521 (608)
Q Consensus 445 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~sg~~dg~ 521 (608)
. ...+|. ..|.+++|+|++.+|++ +.|+.|++||+.+++++.++.. |...+.+++|+|++. ++++|+.| .
T Consensus 222 ~-~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~asg~~~-g 294 (304)
T 2ynn_A 222 A-TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASGFDN-G 294 (304)
T ss_dssp E-EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--SSSSEEEEEECTTCGGGCEEEEETT-E
T ss_pred e-eeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC--CCccEEEEEECCCCCceEEEEecCC-c
Confidence 4 456787 78999999999999999 5899999999999999988864 578999999999885 57777654 5
Q ss_pred EEEEeCCC
Q 007306 522 VKVFDTST 529 (608)
Q Consensus 522 i~iwd~~~ 529 (608)
+.+|++..
T Consensus 295 ~~~~~~~~ 302 (304)
T 2ynn_A 295 FTVLSLGN 302 (304)
T ss_dssp EEEEECC-
T ss_pred eEEEEecc
Confidence 77887764
No 37
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.6e-37 Score=320.99 Aligned_cols=320 Identities=18% Similarity=0.223 Sum_probs=265.8
Q ss_pred cCCCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 007306 208 NDNNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 287 (608)
Q Consensus 208 ~~~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~ 287 (608)
..|...+...++++|+++++|+.||+|++||+.+ +++.. .+. +|.+.|++++|+ ++++++|+.||+|++||
T Consensus 115 ~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~----~~~~~-~~~--~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 115 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT----GKCLR-TLV--GHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp ECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT----CCEEE-ECC--CCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred cccCCCcEEEEEEcCCEEEEEECCCcEEEEECCC----CcEEE-EEc--CCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 3344333335788999999999999999999984 44433 243 499999999998 67999999999999998
Q ss_pred cCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCe
Q 007306 288 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA 366 (608)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v 366 (608)
+.+++. ..... +|...|.+++|+++.+++++ ||.|++||+.+++.+..+.+|...|
T Consensus 186 ~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v 242 (445)
T 2ovr_B 186 AETGEC---------------------IHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242 (445)
T ss_dssp TTTTEE---------------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred CCcCcE---------------------EEEEC--CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence 876654 11111 69999999999988899999 9999999999999999999999999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccccee
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
.++++ ++ .+++|+.||.|++||+++++.+..+.+|...|.++.| ++.++++++.|+.|++||+++++ .+.
T Consensus 243 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-----~~~ 313 (445)
T 2ovr_B 243 RCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-----CIH 313 (445)
T ss_dssp EEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-----EEE
T ss_pred EEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-----EEE
Confidence 99999 67 9999999999999999999999999999999999999 78999999999999999999854 333
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
...+|. ..+.++.++ +.++++ +.|+.|++||+++++.+..+... .|...|.+++|+ +++|++|+.||.|+
T Consensus 314 -~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~ 385 (445)
T 2ovr_B 314 -TLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVK 385 (445)
T ss_dssp -EECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEE
T ss_pred -EEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEE
Confidence 345666 578887775 568888 58999999999999998888653 268899999995 68999999999999
Q ss_pred EEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCc----EEEEeCCC
Q 007306 524 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR----VHVIEPLE 582 (608)
Q Consensus 524 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~----v~iW~~~~ 582 (608)
+||+.+++.+..+.... ..+| ...++ +++|+| ++.++|+|+.||+ |.|||+..
T Consensus 386 iwd~~~~~~~~~~~~~~--~~~~-~~~v~--~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 386 LWDLKTGEFIRNLVTLE--SGGS-GGVVW--RIRASN-TKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEETTTCCEEEEEEECT--TGGG-TCEEE--EEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEECCCCceeeeeeccc--cCCC-CceEE--EEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999888773210 0122 33444 999999 7999999999998 99999875
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-38 Score=311.38 Aligned_cols=288 Identities=12% Similarity=0.115 Sum_probs=217.0
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.|+|+ +|++++.|++|++||+... ...... .+...+|...|++++|+|+|++|++|+.|++|+||+......
T Consensus 20 ~~~s~~--~las~~~D~~i~lw~~~~~--~~~~~~-~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~-- 92 (330)
T 2hes_X 20 FDFSQG--ILATGSTDRKIKLVSVKYD--DFTLID-VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-- 92 (330)
T ss_dssp EEEETT--EEEEEESSSCEEEEECSSS--CCEEEE-EECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------
T ss_pred eccCCC--EEEEEcCCCEEEEEEecCC--CeEEEE-EEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC--
Confidence 467777 9999999999999999742 112222 232234999999999999999999999999999999854321
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC----CceeeEecCCCCCeEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATY 368 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~----~~~~~~~~~~~~~v~~ 368 (608)
..........+ .+|...|.+++|+ +++|++|+ |++|++||+.. .+++..+.+|...|.+
T Consensus 93 ------------~~~~~~~~~~~--~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 93 ------------RTFEMDLLAII--EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp --------------CCCEEEEEE--C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred ------------ccccceeEEEE--cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 00011122211 1699999999999 88999999 99999999943 3567788899999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCC--ceEEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCcee---c
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPCTK--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKL---C 440 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~---~ 440 (608)
++|+|++ +|++|+.|++|++||..++ +++..+.+|...|.+++|+|+ +..|++++.|++|++||+..+... .
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9999999 9999999999999998876 677889999999999999998 778999999999999998763210 0
Q ss_pred ccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc--eeeeecCCCCCC-CeEEEEEec--CCCEEE
Q 007306 441 SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN--HTSQLVPDKMDL-PITYATYSC--DGKCIY 514 (608)
Q Consensus 441 ~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~~-~v~~~~~s~--~~~~l~ 514 (608)
......+...|. ..|.+++|++++ +|++ +.|+.|++||..+++ ...... ..|.. .|.+++|+| ++++|+
T Consensus 239 ~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 239 WVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CTTTTSCEEEEEEC-----CCEE
T ss_pred eEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cccccceEEEEEEecCCCceEEE
Confidence 122232223366 789999999876 5555 799999999998774 233322 24565 899999999 789999
Q ss_pred EEEcCCeEEEEeCCC
Q 007306 515 VSCKSGHVKVFDTST 529 (608)
Q Consensus 515 sg~~dg~i~iwd~~~ 529 (608)
+|+.||.|++|++++
T Consensus 314 s~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 314 TGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEETTSEEEEEEC--
T ss_pred EecCCCcEEEEEecc
Confidence 999999999999865
No 39
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-37 Score=308.65 Aligned_cols=282 Identities=17% Similarity=0.198 Sum_probs=233.7
Q ss_pred eEeecCC-CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 215 ESTSLPD-ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 215 ~~~~s~d-g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.++|+|+ +++|++|+.|++|++||+.............+. +|...|.+++|+|+|++|++++.|+.|++|+......
T Consensus 43 ~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~ 120 (340)
T 4aow_A 43 QIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT 120 (340)
T ss_dssp EEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe--CCCCCEEEEEECCCCCEEEEEcccccceEEeecccce
Confidence 4579998 689999999999999999754322222333354 4999999999999999999999999999998776654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcee-eEecCCCCCeEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-ATFANPPPIATYF 369 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~-~~~~~~~~~v~~~ 369 (608)
... .. .+...+..+.++ +.+|++++ |+.+++||+...... ....+|...+.++
T Consensus 121 ~~~---------------------~~--~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~ 177 (340)
T 4aow_A 121 TRR---------------------FV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV 177 (340)
T ss_dssp EEE---------------------EE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred eee---------------------ec--CCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence 110 00 366777888888 88999999 999999999765443 3456889999999
Q ss_pred EEcCCC---eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee
Q 007306 370 ILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 370 ~~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 446 (608)
+|++++ .+++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.|+.|++||+++.+ .+.
T Consensus 178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-----~~~- 251 (340)
T 4aow_A 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-----HLY- 251 (340)
T ss_dssp EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-----EEE-
T ss_pred EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-----eee-
Confidence 999876 68899999999999999999999999999999999999999999999999999999999843 333
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecC-------CCCCCCeEEEEEecCCCEEEEEEcC
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-------DKMDLPITYATYSCDGKCIYVSCKS 519 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~sg~~d 519 (608)
....+ ..+.+++|+|++.+++++.|+.|++||++++..+..+.. ..|...|++++|+|||++|++|+.|
T Consensus 252 ~~~~~----~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 327 (340)
T 4aow_A 252 TLDGG----DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD 327 (340)
T ss_dssp EEECS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT
T ss_pred eecCC----ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC
Confidence 23333 479999999999888888999999999998877666542 2468899999999999999999999
Q ss_pred CeEEEEeCCCCc
Q 007306 520 GHVKVFDTSTLE 531 (608)
Q Consensus 520 g~i~iwd~~~~~ 531 (608)
|.|+|||+.+|.
T Consensus 328 g~v~iW~~~tGt 339 (340)
T 4aow_A 328 NLVRVWQVTIGT 339 (340)
T ss_dssp SCEEEEEEEC--
T ss_pred CEEEEEeCCCcC
Confidence 999999999885
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-37 Score=315.56 Aligned_cols=282 Identities=14% Similarity=0.135 Sum_probs=230.5
Q ss_pred ceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCC----------------CCCCcEEEEEEeeCCCEEEE
Q 007306 213 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDN----------------SFGGRVVRLIYSHSGDFLVA 276 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~----------------~h~~~V~~~~fsp~g~~l~s 276 (608)
...+.|+|||++|++++ ++++++|++.+ +..... +... .+...|.+++|+|+|++|++
T Consensus 67 V~~v~fspdg~~la~g~-~~~v~i~~~~~----g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGC-NKTTQVYRVSD----GSLVAR-LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp CCEEEECTTSSEEEEEC-BSCEEEEETTT----CCEEEE-ECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEEecC----CCEEEE-ecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 34568999999999976 78999999974 333221 2210 12335999999999999999
Q ss_pred EeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC
Q 007306 277 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF 353 (608)
Q Consensus 277 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~ 353 (608)
|+.|+.|++||+.+++. .... .+|...|.+++|+ +++|++++ |++|++||+.++
T Consensus 141 ~~~d~~i~iwd~~~~~~---------------------~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKI---------------------VMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp EETTSCEEEEETTTTEE---------------------EEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred EcCCCeEEEEECCCCcE---------------------EEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 99999999998876653 1111 1699999999999 88999999 999999999999
Q ss_pred ceeeEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEe-------eCccccEEEEEEeCCCCEEEEEcC
Q 007306 354 QTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-------KGHQNRITCLAYSLSLNVLVSSGA 424 (608)
Q Consensus 354 ~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~ 424 (608)
++...+. +...+.+++|+| ++ +|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++.
T Consensus 198 ~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 198 QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 9888776 556799999999 77 9999999999999999999887766 578999999999999999999999
Q ss_pred CCcEEEEECCCCceec-------ccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCC
Q 007306 425 DAQLCVWDAVGWKKLC-------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK 496 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~ 496 (608)
|+.|++||+++..... ..+.. ...+|. ..|.+++|+|++++|++ +.|+.|++||..+++++..+..
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~-~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-- 350 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEV-TYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-- 350 (393)
T ss_dssp TSEEEEEEC---------------CEEE-EEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceE-EEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC--
Confidence 9999999998643211 11222 345677 68999999999999999 5899999999999999888864
Q ss_pred CCCCeEEEEEec------CCCEEEEEEcCCeEEEEeCCCC
Q 007306 497 MDLPITYATYSC------DGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 497 ~~~~v~~~~~s~------~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
|...|.+++|++ ++++|++|+.||.|+||++...
T Consensus 351 h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 351 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 689999999986 6899999999999999998643
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.6e-37 Score=340.79 Aligned_cols=293 Identities=15% Similarity=0.197 Sum_probs=240.3
Q ss_pred CCCCcEEEEEEeeCC-CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 257 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
+|.+.|++++|+|++ ++|+||+.||+|++|++.+.... .+...... .+|...|.+++|+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~--~~h~~~v~~v~~s~~ 441 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRL--TGHSHFVEDVVLSSD 441 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEE--ECCSSCEEEEEECTT
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------ccccccee--cCCCCcEEEEEECCC
Confidence 499999999999875 79999999999999998765320 11111111 1799999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe---eCccccEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---KGHQNRIT 408 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~ 408 (608)
+++|++|+ |++|++||+.+++....+.+|...|.+++|+|++ .|++|+.|++|++||.......... .+|...|.
T Consensus 442 g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 88999999 9999999999999999999999999999999999 9999999999999998755433322 46888999
Q ss_pred EEEEeCCC--CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCC
Q 007306 409 CLAYSLSL--NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPT 485 (608)
Q Consensus 409 ~~~~~~~~--~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~ 485 (608)
+++|+|++ ..+++++.|++|++||+++.+ ... ...+|. +.|++++|+|++++|++ +.|+.|++||+.+
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-----~~~-~~~~h~---~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRS-TLAGHT---GYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCC-----EEE-EECCCS---SCEEEEEECTTSSEEEEEETTSBCEEEETTT
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCc-----EEE-EEcCCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 99999987 689999999999999998843 333 456787 79999999999999999 5899999999999
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec---------cCCCcccccccEEE
Q 007306 486 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA---------QPGTISLELYPLVI 556 (608)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~g~~~~~v~~~~v 556 (608)
++.+..+. +...|.+++|+|++.++++++ |+.|++||+.+++.+..+..+... +..+....++++++
T Consensus 593 ~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 593 GKKLYSLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp TEEEECCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred CceEEEec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 99887774 367899999999999888775 566999999999888776532110 00111233457799
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 557 AAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 557 ~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+|+| |+.+|++|+.||+|+||++.
T Consensus 669 ~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEcC-CCCEEEEEcCCCeEEEEecc
Confidence 9999 89999999999999999985
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-36 Score=300.53 Aligned_cols=277 Identities=12% Similarity=0.115 Sum_probs=232.9
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..+.|+|+|+++++++.||.|++|+..+ +.+... +. +|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 27 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~-~~--~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 99 (312)
T 4ery_A 27 SSVKFSPNGEWLASSSADKLIKIWGAYD----GKFEKT-IS--GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99 (312)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTT----CCEEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEECCCCCEEEEeeCCCeEEEEeCCC----cccchh-hc--cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence 3458999999999999999999999974 344332 43 4999999999999999999999999999999877654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI 370 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 370 (608)
. .... +|...|.+++|+ ++++++++ |+.|++||+.+++.+..+..|...|.+++
T Consensus 100 ~---------------------~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 100 L---------------------KTLK--GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp E---------------------EEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred E---------------------EEEc--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 1 1111 689999999999 88999999 99999999999999999999999999999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEEee-CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
|+|++ .+++|+.|+.|++||+++++.+..+. .+...+.+++|+|+++++++++.|+.|++||+++++ .+. ..
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~-~~ 230 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK-----CLK-TY 230 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-----EEE-EE
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc-----EEE-EE
Confidence 99999 99999999999999999998887664 466789999999999999999999999999999854 333 33
Q ss_pred ccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEE
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVF 525 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~--~dg~i~iw 525 (608)
.+|......+......+++.++++ +.|+.|++||+.+++.+..+.. |...|.+++|+|+++++++++ .|+.|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG--HTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC--CSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc--cCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 344311112333334467888888 5899999999999999888864 689999999999999999997 69999999
Q ss_pred eCC
Q 007306 526 DTS 528 (608)
Q Consensus 526 d~~ 528 (608)
+.+
T Consensus 309 ~~d 311 (312)
T 4ery_A 309 KSD 311 (312)
T ss_dssp ECC
T ss_pred cCC
Confidence 864
No 43
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.2e-37 Score=360.02 Aligned_cols=324 Identities=12% Similarity=0.147 Sum_probs=268.6
Q ss_pred ceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 213 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
...+.|+|||+++++|+.||+|++||+.+ +.... ++. +|.+.|.+++|+|+|++|++++.||.|++||+.+++
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~----~~~~~-~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~ 690 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAET----GEKLL-DIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK 690 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTT----CCEEE-EEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCC----CCEEE-Eec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence 34578999999999999999999999984 33332 243 499999999999999999999999999999987765
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeE
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT 367 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~ 367 (608)
... .+. +|...|.+++|+ +.++++++ |+.|++||+.+++++..+.+|...|+
T Consensus 691 ~~~----------~~~-------------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 691 LVH----------TYD-------------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp EEE----------EEE-------------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred eEE----------EEc-------------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 411 111 699999999998 34888999 99999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe----------------------------------------------
Q 007306 368 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL---------------------------------------------- 400 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~---------------------------------------------- 400 (608)
+++|+|++ .+++|+.||.|++||+.+++....+
T Consensus 748 ~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp EEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred EEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 99999999 9999999999999998776543322
Q ss_pred ---------eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE
Q 007306 401 ---------KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 401 ---------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 471 (608)
.+|...|.+++|+|+++++++++.||.|++||+.++. .+. ...+|. ..|.+++|+|+|++++
T Consensus 828 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~-----~~~-~~~~h~---~~v~~v~~spdg~~l~ 898 (1249)
T 3sfz_A 828 TSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL-----KVA-DCRGHL---SWVHGVMFSPDGSSFL 898 (1249)
T ss_dssp TCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEECTTSSEEE
T ss_pred CCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc-----eee-ecCCCc---cceEEEEECCCCCEEE
Confidence 1577889999999999999999999999999999843 333 455777 7999999999999999
Q ss_pred E-EeCCcEEEEECCCCcee-----------------------------eeecC------CCCCCCeEEEEEecCCCEEEE
Q 007306 472 S-IHEGQIDVYEAPTLNHT-----------------------------SQLVP------DKMDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 472 ~-~~d~~i~iwd~~~~~~~-----------------------------~~~~~------~~~~~~v~~~~~s~~~~~l~s 515 (608)
+ +.|+.|++||+.+.... ..... ..+...+.+++|+|+++++++
T Consensus 899 s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~ 978 (1249)
T 3sfz_A 899 TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF 978 (1249)
T ss_dssp EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE
T ss_pred EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE
Confidence 9 58999999996532110 00000 012567999999999999999
Q ss_pred EEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 516 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 516 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
|+.||.|++|++.+++....+. +| ...+. +++|+| ++.+|++++.||.|++|++.+++..
T Consensus 979 g~~~g~i~i~d~~~~~~~~~~~-------~h-~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 979 GDEDGAIKIIELPNNRVFSSGV-------GH-KKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp EETTSCCEEEETTTTSCEEECC-------CC-SSCCC--CEEECS-SSSCEEEECSSSBEEEEETTTTEEE
T ss_pred EcCCCCEEEEEcCCCceeeecc-------cC-CCceE--EEEECC-CCCEEEEEcCCCEEEEEECCCCceE
Confidence 9999999999999998877665 44 44455 999999 7999999999999999999987754
No 44
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-37 Score=361.53 Aligned_cols=344 Identities=13% Similarity=0.118 Sum_probs=286.9
Q ss_pred eEeecC--CCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 215 ESTSLP--DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 215 ~~~~s~--dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
.+.|+| ++..+++++.|+.|++||+.. +.+.. .+. +|.+.|++++|+|+|++|++++.||.|++||+.++.
T Consensus 704 ~~~~~~~~~~~~l~sg~~d~~v~vwd~~~----~~~~~-~~~--~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 704 CCHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECRN-TMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp EEEECSSSSCCEEEEEETTSCEEEEETTS----SSEEE-EEC--CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred EEEEecCCCceEEEEEeCCCeEEEEECCC----cchhh-eec--CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence 367888 556899999999999999984 44443 243 499999999999999999999999999999997764
Q ss_pred ceee---------------------------------ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 293 QSLE---------------------------------EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 293 ~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
.... .......+.+|+..++........ +|...|.+++|+ +.++
T Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l 855 (1249)
T 3sfz_A 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLA 855 (1249)
T ss_dssp EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEE
T ss_pred ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEE
Confidence 3221 011123567899888886655433 589999999999 8899
Q ss_pred EEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC-----------------------
Q 007306 338 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPC----------------------- 392 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~----------------------- 392 (608)
++++ |+.|++||+.++..+..+.+|...|.+++|+|++ .+++++.||.|++||+.
T Consensus 856 ~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1249)
T 3sfz_A 856 VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET 935 (1249)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEE
T ss_pred EEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCc
Confidence 9999 9999999999999999999999999999999999 99999999988888743
Q ss_pred --------------------------------------------------------CCceEEEeeCccccEEEEEEeCCC
Q 007306 393 --------------------------------------------------------TKKTKAKLKGHQNRITCLAYSLSL 416 (608)
Q Consensus 393 --------------------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~ 416 (608)
+++....+.+|...|.+++|+|+|
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg 1015 (1249)
T 3sfz_A 936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015 (1249)
T ss_dssp EEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS
T ss_pred EEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC
Confidence 233344556788999999999999
Q ss_pred CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCC
Q 007306 417 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK 496 (608)
Q Consensus 417 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~ 496 (608)
+++++++.||.|++||+.+++.. . ..+|. ..|.+++|+|++.+++.+.|+.|++||+.+++.+..+..
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~~~-----~--~~~~~---~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-- 1083 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGDYV-----F--LQAHQ---ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC-- 1083 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTEEE-----C--CBCCS---SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC--
T ss_pred CEEEEEcCCCEEEEEECCCCceE-----E--EecCC---CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc--
Confidence 99999999999999999985432 2 23555 689999999988776668999999999999999888864
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEE
Q 007306 497 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 576 (608)
Q Consensus 497 ~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~ 576 (608)
|...|.+++|+|+++++++++.||.|++||+.+++....+. +| ... +++++|+| ++.+||+|+.||.|+
T Consensus 1084 ~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~-------~h-~~~--v~~~~~s~-dg~~lat~~~dg~i~ 1152 (1249)
T 3sfz_A 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK-------GH-NGC--VRCSAFSL-DGILLATGDDNGEIR 1152 (1249)
T ss_dssp CSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC-------CC-SSC--EEEEEECS-SSSEEEEEETTSCCC
T ss_pred cCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec-------cC-CCc--EEEEEECC-CCCEEEEEeCCCEEE
Confidence 68899999999999999999999999999999998777665 44 333 44999999 899999999999999
Q ss_pred EEeCCCCcccccc
Q 007306 577 VIEPLESEVEWGK 589 (608)
Q Consensus 577 iW~~~~~~~~~~~ 589 (608)
+||+.+++.....
T Consensus 1153 vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1153 IWNVSDGQLLHSC 1165 (1249)
T ss_dssp EEESSSSCCCCCC
T ss_pred EEECCCCceEEEe
Confidence 9999998875443
No 45
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=305.63 Aligned_cols=290 Identities=14% Similarity=0.179 Sum_probs=247.4
Q ss_pred eeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCe
Q 007306 248 CRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 327 (608)
Q Consensus 248 ~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 327 (608)
.....+.+ |.+.|++++|+|+|++|++++.||.|++||+.+++. .... .+|...|
T Consensus 23 ~~~~~l~~--h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~---------------------~~~~--~~h~~~v 77 (369)
T 3zwl_B 23 MKAIKLTG--HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER---------------------LGTL--DGHTGTI 77 (369)
T ss_dssp EEEEEEEC--CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE---------------------EEEE--CCCSSCE
T ss_pred cccEEEEE--eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh---------------------hhhh--hhcCCcE
Confidence 33444544 999999999999999999999999999998876654 1111 1599999
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCc---
Q 007306 328 SCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK--- 395 (608)
Q Consensus 328 ~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~i~vwd~~~~~--- 395 (608)
.+++|+ +++|++++ ||.|++||+.+++.+..+. +...+.+++|+|++ .+++++.+ +.|++||+.++.
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 999999 88999999 9999999999999999888 88899999999999 99999998 999999987653
Q ss_pred --------eEEEeeCccc--cEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC
Q 007306 396 --------TKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 465 (608)
Q Consensus 396 --------~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 465 (608)
....+..|.. .+.+++|+|+++++++++.||.|++||+++.. ..+. ....|. ..|.+++|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~-~~~~~~---~~v~~~~~~~ 228 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVD-SIDLHE---KSISDMQFSP 228 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----EEEE-EEECCS---SCEEEEEECT
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----EeEE-EEecCC---CceeEEEECC
Confidence 3344555665 89999999999999999999999999998732 2333 344565 6899999999
Q ss_pred CCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--------------eEEEEeCCCC
Q 007306 466 DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--------------HVKVFDTSTL 530 (608)
Q Consensus 466 ~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg--------------~i~iwd~~~~ 530 (608)
++++|++ +.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++ .+++||..++
T Consensus 229 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 9999998 589999999999999988886 478899999999999999999988 8999999999
Q ss_pred ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 531 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 531 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
+.+..+. +| ... +.+++|+| ++.+|++++.||.|++|++..+..
T Consensus 306 ~~~~~~~-------~~-~~~--v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 306 EEIGRVQ-------GH-FGP--LNTVAISP-QGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CEEEEEE-------CC-SSC--EEEEEECT-TSSEEEEEETTSEEEEEEECHHHH
T ss_pred cchhhee-------cc-cCc--EEEEEECC-CCCEEEEEcCCCeEEEEECccccc
Confidence 9888876 33 333 44999999 899999999999999999987654
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-38 Score=324.24 Aligned_cols=320 Identities=10% Similarity=0.098 Sum_probs=247.8
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCccee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
.|+|+++.+++++ .|+.. +++......+ |.+.|++++|+| +|++|++|+.||+|++||+.+...
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-----g~~~~~~~~~--h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-- 98 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-----GKLIATLMEN--EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-- 98 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-----CCEEEEECTT--TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT--
T ss_pred hcCCccccccccc------ccccc-----ceEEeeeccC--CCCceEEEEECCCCCCEEEEecCCceEEEeECccccc--
Confidence 5899999888876 38764 3333321243 999999999999 999999999999999999865211
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC---CCceeeEec---------
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLE---TFQTLATFA--------- 360 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~---~~~~~~~~~--------- 360 (608)
+.........+|...|.+++|+ +++|++++ ||.|++||+. +++....+.
T Consensus 99 ----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~ 162 (437)
T 3gre_A 99 ----------------GEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINL 162 (437)
T ss_dssp ----------------TCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEG
T ss_pred ----------------CcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEc
Confidence 0000000000489999999999 78999999 9999999995 555444332
Q ss_pred -C--CCCCeEEEE--EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC--ccccEEEEEEeCCCCEEEEEcCCCcEEEEE
Q 007306 361 -N--PPPIATYFI--LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG--HQNRITCLAYSLSLNVLVSSGADAQLCVWD 432 (608)
Q Consensus 361 -~--~~~~v~~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 432 (608)
. +...+.++. +++++ .+++|+.|+.|++||+++++.+..+.+ |...|++++|+|++++|++|+.||.|++||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD 242 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 2 456677777 56888 999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCCCceecccceeeeeccCCCCccceEEEEEc----CCCCEEEEE-eCCcEEEEECCCCceeeeecCCC-----------
Q 007306 433 AVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH----PDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----------- 496 (608)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----p~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~----------- 496 (608)
++++ ..+.++...|. ..|.+++|+ |++.+|+++ .|+.|++||+++++++..+..+.
T Consensus 243 ~~~~-----~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (437)
T 3gre_A 243 IRFN-----VLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPI 314 (437)
T ss_dssp TTTT-----EEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCB
T ss_pred cCCc-----cEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccc
Confidence 9984 34443332454 689999665 467788885 88999999999999877776431
Q ss_pred -------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceee----------------------
Q 007306 497 -------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY---------------------- 541 (608)
Q Consensus 497 -------------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~---------------------- 541 (608)
|...|.+++|+ ++++|++|+.||.|++||+.+++....+..+..
T Consensus 315 ~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 315 EKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp CSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred ccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 56679999999 889999999999999999999988777663210
Q ss_pred --------ccCCCcccccccEEEEEecC-CCCEEEEEeCCCcEEEEe
Q 007306 542 --------AQPGTISLELYPLVIAAHPL-EPNRIALGLTNGRVHVIE 579 (608)
Q Consensus 542 --------~~~g~~~~~v~~~~v~~sp~-d~~~las~s~Dg~v~iW~ 579 (608)
...+| ... +++++|++. ++.+|++|+.||.|+||+
T Consensus 394 ~~~~~~~~~~~~h-~~~--I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYH-HDI--INSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --------------CCC--EEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccCccccc-ccc--eeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 00113 333 459999983 277999999999999995
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=332.28 Aligned_cols=326 Identities=10% Similarity=0.008 Sum_probs=225.5
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeC------CCEEEEEeCCCcEEEEecCCC
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~------g~~l~s~s~dg~i~iw~~~~~ 291 (608)
.+|+++.+++++.|++|+|||+........ ...++.. |.+.|++++|+|+ +.+||+++.||+|+|||+..+
T Consensus 169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~-~~~~l~~--~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~ 245 (524)
T 2j04_B 169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCV-KVQTIVH--SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDN 245 (524)
T ss_dssp -------------CEEEEEEEEETTTCCEE-EEEEEEE--CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCC
T ss_pred cchhhhhhccCCCCceEEEEEccCCCCCce-EEEEEEe--cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCC
Confidence 367777888899999999999975221111 1122333 7889999999997 579999999999999999766
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCc-eeeEecCCCCCeEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATY 368 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~-~~~~~~~~~~~v~~ 368 (608)
..... ......... . ...+|...|++++|+ +..|++|+ ||+|++||+.++. ....+.+|...|.+
T Consensus 246 ~~~~~--------~~~~~~~p~-~---~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 246 ATDVH--------VFKMCEKPS-L---TLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILS 313 (524)
T ss_dssp SSSSS--------EEECCCSCS-E---EECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEE
T ss_pred ccccc--------cceeecCce-E---EEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEE
Confidence 43100 000000000 0 011699999999999 77999999 9999999999774 45568899999999
Q ss_pred E--EEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccc--cEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceeccc
Q 007306 369 F--ILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQN--RITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 369 ~--~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 442 (608)
+ +|+|++ +|++|+.|++|++||++++++...+.+|.. .|.+++|+|+++.+++++.|++|++||++++.
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~----- 388 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF----- 388 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-----
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-----
Confidence 9 578886 789999999999999999887777777653 58899999999999999999999999998843
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCC---CCCCCeEEEEEecCCCEEEEEEc
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.+. ...+|. +.|++++|+|+|++|++ +.|++|++||+..+ .+...... .+...+++++|+|+|+.+. ..
T Consensus 389 ~~~-~l~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~- 461 (524)
T 2j04_B 389 AVH-PLVSRE---TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID- 461 (524)
T ss_dssp CCE-EEEECS---SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-EC-
T ss_pred cce-eeecCC---CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-cc-
Confidence 333 344677 79999999999999998 58999999998643 33222110 1123578999999998552 22
Q ss_pred CCeEEEEeCC-CCceeEEEeceeeccCCCcccccccEEEEEecCCC---CEEEEEeCCCcEEEEeCCC
Q 007306 519 SGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 519 dg~i~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~v~iW~~~~ 582 (608)
+.+++|+.. ++.....+. || ...|+ +|+|+| ++ .++|+|+.||.|+||++..
T Consensus 462 -~~~~~~~~~~~g~~~~~l~-------gh-~~~V~--~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 -SSYEVYPLTVNDVSKAKID-------AH-GINIT--CTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -CCCCCCC--------------------C-CCSCC--CEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred -CCceecccccCCcceeeec-------CC-CceEE--EEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 223344433 344444444 44 44455 999999 54 4999999999999999864
No 48
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.9e-36 Score=312.53 Aligned_cols=305 Identities=13% Similarity=0.170 Sum_probs=250.5
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
.+.++++++++|+.||+|++||+.+ +++.. .+. +|.+.|++++|+|++ +|++|+.||+|++||+.+++.
T Consensus 127 ~~~~~~~~l~sgs~dg~i~vwd~~~----~~~~~-~~~--~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~--- 195 (464)
T 3v7d_B 127 CLQFEDNYVITGADDKMIRVYDSIN----KKFLL-QLS--GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCC--- 195 (464)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTT----TEEEE-EEC--CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEE---
T ss_pred EEEECCCEEEEEcCCCcEEEEECCC----CcEEE-EEe--CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcE---
Confidence 5667889999999999999999974 44333 243 499999999999998 899999999999998876654
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCce----------------
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQT---------------- 355 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~~l~s~~-d~~i~vwd~~~~~~---------------- 355 (608)
..... +|...|.+++|+ ++++++++ |+.|++||+.++..
T Consensus 196 ------------------~~~~~--~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 196 ------------------THVFE--GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp ------------------EEEEC--CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred ------------------EEEEC--CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 11111 699999999998 47899999 99999999987653
Q ss_pred -------eeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCc
Q 007306 356 -------LATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 356 -------~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 427 (608)
...+.+|...+.++ ++++ .+++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.||.
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~ 333 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Confidence 45667888888876 5777 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEE
Q 007306 428 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY 506 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 506 (608)
|++||+++++ .+. ...+|. ..|.+++|+ +.++++ +.|+.|++||+.++....... +...+..++|
T Consensus 334 i~vwd~~~~~-----~~~-~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~ 399 (464)
T 3v7d_B 334 IRIWDLENGE-----LMY-TLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTF 399 (464)
T ss_dssp EEEEETTTTE-----EEE-EECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEE
T ss_pred EEEEECCCCc-----EEE-EEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEE
Confidence 9999999843 444 455676 789999998 478887 689999999999887766553 4677888999
Q ss_pred ecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 507 SCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 507 s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
+++++++++|+ ||.|++||+.+++.+..+.. +| ...++ +++|++ ..++++++.||.+.+|-+
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~------~~-~~~v~--~v~~~~--~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSGKLVHANIL------KD-ADQIW--SVNFKG--KTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTCCEEESCTT------TT-CSEEE--EEEEET--TEEEEEEEETTEEEEEEE
T ss_pred EeCCCEEEEec-CCeEEEEECCCCcEEehhhc------cC-CCcEE--EEEecC--CEEEEEEEeCCeEEEEEe
Confidence 99999999998 89999999999998765322 23 33444 999975 567777778887666543
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-36 Score=330.65 Aligned_cols=280 Identities=17% Similarity=0.216 Sum_probs=230.1
Q ss_pred eEeecCCC-CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 215 ESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 215 ~~~~s~dg-~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.+.++|++ ++|++|+.|++|++|++.............+. +|...|.+++|+|+|++|++|+.||+|+|||+.++..
T Consensus 387 ~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~ 464 (694)
T 3dm0_A 387 AIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVS 464 (694)
T ss_dssp EEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec--CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 45788875 69999999999999999753222122222354 4999999999999999999999999999998876654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEe---cCCCCCeE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATF---ANPPPIAT 367 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~---~~~~~~v~ 367 (608)
..... +|...|.+++|+ +++|++++ |++|++||+......... .+|...|.
T Consensus 465 ---------------------~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 465 ---------------------TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp ---------------------EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred ---------------------eeEEe--CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 11111 699999999999 88999999 999999998754433332 36888999
Q ss_pred EEEEcCCC---eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccce
Q 007306 368 YFILLPQD---LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL 444 (608)
Q Consensus 368 ~~~~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 444 (608)
+++|+|++ .+++|+.|++|++||+++++....+.+|...|++++|+|++++|++++.||.|++||+++++. +
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~-----~ 596 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK-----L 596 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE-----E
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce-----E
Confidence 99999986 699999999999999999999999999999999999999999999999999999999998543 3
Q ss_pred eeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCC-----------------CCCCeEEEEEe
Q 007306 445 HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-----------------MDLPITYATYS 507 (608)
Q Consensus 445 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~~~~v~~~~~s 507 (608)
. ....+ ..|.+++|+|++.+++++.++.|++||++++..+..+.... +...+++++|+
T Consensus 597 ~-~~~~~----~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 597 Y-SLEAN----SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp E-CCBCS----SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred E-EecCC----CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 3 12222 47999999999999999889999999999998877664321 11247899999
Q ss_pred cCCCEEEEEEcCCeEEEEeCCC
Q 007306 508 CDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
|+|++|++|+.||.|+||++..
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCEEEEEcCCCeEEEEeccC
Confidence 9999999999999999999853
No 50
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-36 Score=311.12 Aligned_cols=296 Identities=9% Similarity=0.045 Sum_probs=239.4
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-C
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-G 334 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~ 334 (608)
.+|.+.|++++|+| ++|++|+.||.|++|++.+...... ........ +|...|.+++|+ +
T Consensus 13 ~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~--~h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 13 KAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP---------------KDKSYSHF--VHKSGLHHVDVLQA 73 (397)
T ss_dssp SCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG---------------GGGEEEEE--CCTTCEEEEEEEEE
T ss_pred hhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC---------------CCcceEEe--cCCCcEEEEEEecc
Confidence 34999999999999 7999999999999999987752000 00011111 599999999999 6
Q ss_pred --------CEEEEEe-CCcEEEEEcCCCce-----eeEecCC-----CCCeEEEEEc----CCC-e-EEEEeCCCcEEEE
Q 007306 335 --------SHLFSAS-GGKISIFSLETFQT-----LATFANP-----PPIATYFILL----PQD-L-FAFGFDDSSILVH 389 (608)
Q Consensus 335 --------~~l~s~~-d~~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~-~-l~~~~~d~~i~vw 389 (608)
++|++++ |+.|++||+.+++. ...+..| ...|.+++|+ |++ . |++++.||.|++|
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 153 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 153 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEE
Confidence 6899999 99999999998887 8888888 5899999999 999 8 9999999999999
Q ss_pred eCCC------CceEE-----Eee-------CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc-
Q 007306 390 CPCT------KKTKA-----KLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG- 450 (608)
Q Consensus 390 d~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~- 450 (608)
|+.+ ++.+. .+. .|...|.+++|+|++ ++++++.|+.|++||+++++ .+. ....
T Consensus 154 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-----~~~-~~~~~ 226 (397)
T 1sq9_A 154 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-----PLY-NFESQ 226 (397)
T ss_dssp EEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-----EEE-EEECC
T ss_pred eCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-----eeE-EEecc
Confidence 9998 66665 663 488999999999999 99999999999999999843 333 3334
Q ss_pred --C---CCCccceEEEEEcCCCCEEEE-EeC---CcEEEEECCCCceeeeecCCC-----------CCCCeEEEEEecCC
Q 007306 451 --L---VPETTIVNHIQFHPDQIHLLS-IHE---GQIDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDG 510 (608)
Q Consensus 451 --~---~~~~~~v~~v~~sp~~~~l~~-~~d---~~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~ 510 (608)
| . ..|.+++|+|++++|++ +.| +.|++||+++++.+..+.... |...|.+++|+|++
T Consensus 227 ~~h~~~~---~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 227 HSMINNS---NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp C---CCC---CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred ccccccC---CccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 5 4 68999999999999999 578 899999999999888886411 68899999999999
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCC--------------cccccccEEEEEecCCC----------CEE
Q 007306 511 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT--------------ISLELYPLVIAAHPLEP----------NRI 566 (608)
Q Consensus 511 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~--------------~~~~v~~~~v~~sp~d~----------~~l 566 (608)
++|++++.||.|++||+.+++.+..+...... .+| +... +.+++|+| ++ .+|
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~--v~~~~~~~-~g~~~~~~~~~~~~l 379 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDD-IEIEEDILAVDEHGDSLAEPG--VFDVKFLK-KGWRSGMGADLNESL 379 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGG-CSSGGGCCCBCTTSCBCSSCC--EEEEEEEC-TTTSBSTTCTTSCEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCc-ccchhhhhccccccccccCCc--eeEEEecc-ccccccccccccceE
Confidence 99999999999999999999988887621000 011 0333 55999999 66 799
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 007306 567 ALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 567 as~s~Dg~v~iW~~~~~~ 584 (608)
++++.||.|++|++.+++
T Consensus 380 ~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 380 CCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEETTTEEEEEEEEC--
T ss_pred EEecCCCcEEEEEcCCCC
Confidence 999999999999998763
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.9e-35 Score=294.43 Aligned_cols=278 Identities=12% Similarity=0.067 Sum_probs=237.2
Q ss_pred CceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 212 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 212 ~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
....+.|+|+++++++++ ||.|++||+...........+ ...+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL--DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE--ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc--cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 334568999999999999 999999999864333334432 22348999999999999999999999999999998766
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
+.. .... + .+|...|.+++|+ ++++++++ |+.|++||+.+++.+..+..|...+.+
T Consensus 130 ~~~-------------------~~~~-~-~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 130 TPR-------------------IKAE-L-TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp --E-------------------EEEE-E-ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred Ccc-------------------eeee-c-ccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEE
Confidence 521 0000 1 1588999999999 78999999 999999999999999999999999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
++|+|++ .+++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.|+.|++||+++++. . .
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~------~-~ 260 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK------Y-Q 260 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE------E-E
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe------E-E
Confidence 9999999 99999999999999999998888775 778899999999999999999999999999988542 1 2
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
...|. ..|.+++|+|+++++++ +.|+.|++||+.+++.+... .|...+.+++|+|++++|++++.||.|++|+
T Consensus 261 ~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 261 LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EcCCc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 34555 68999999999999998 58999999999999887554 3588999999999999999999999999999
Q ss_pred C
Q 007306 527 T 527 (608)
Q Consensus 527 ~ 527 (608)
+
T Consensus 335 ~ 335 (337)
T 1gxr_A 335 V 335 (337)
T ss_dssp E
T ss_pred E
Confidence 6
No 52
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.8e-37 Score=318.44 Aligned_cols=290 Identities=16% Similarity=0.208 Sum_probs=224.0
Q ss_pred CCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 258 FGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 258 h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
|...|+|++|+| ++++||+|+.||.|+|||+.++... .... ..+|.+.|++++|+
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------~~~~---~~gH~~~V~~l~f~p~~ 176 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------TFIK---GIGAGGSITGLKFNPLN 176 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC------------------EEEC---CCSSSCCCCEEEECSSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce------------------eEEE---ccCCCCCEEEEEEeCCC
Confidence 889999999999 5678999999999999998765431 0111 11699999999998
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
+++|++|+ ||+|++||+.++........ +...+.+++|+|++ +|++|+.||.|++||++ ++.+..+.+|...|.+
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence 67999999 99999999987654433333 34467899999999 99999999999999986 4567788899999999
Q ss_pred EEEeCCCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc
Q 007306 410 LAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN 487 (608)
Q Consensus 410 ~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~ 487 (608)
++|+|++. ++++++.|+.|++||+++.+... .+. ...+|. ..|++++|+|+|++|++ +.|+.|++||+.++.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~--~~~-~~~~h~---~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKA--SFL-YSLPHR---HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSS--CCS-BCCBCS---SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccc--eEE-Eeeecc---ccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 99999876 78899999999999998754321 111 234566 78999999999999999 589999999999988
Q ss_pred eeeeecCCCC----CCCeEEEEEecCCCEEEEEEc------------CCeEEEEeCCCCceeEEEeceeeccCCCccccc
Q 007306 488 HTSQLVPDKM----DLPITYATYSCDGKCIYVSCK------------SGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 488 ~~~~~~~~~~----~~~v~~~~~s~~~~~l~sg~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 551 (608)
....+..+.+ ...+....|+|++.++++++. ++.|++||..+++.+..+.. +| ...+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~------~~-~~~v 402 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD------PE-SSGI 402 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC------SS-CCCC
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC------CC-CCcE
Confidence 7766654321 123445677787777776642 35799999999998877642 23 4444
Q ss_pred ccEEE-EEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 552 YPLVI-AAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 552 ~~~~v-~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
. ++ +|+| ++.+||+|+ |++|+||++.+++.+
T Consensus 403 ~--s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 403 S--SLNEFNP-MGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp C--CEEEECT-TSSCEEEEC-SSEEEECCCC-----
T ss_pred E--EEEEECC-CCCEEEEEc-CCcEEEEECCcCeee
Confidence 4 55 7999 799999886 789999999988753
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.4e-36 Score=302.37 Aligned_cols=293 Identities=12% Similarity=0.103 Sum_probs=218.7
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCC-------cEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTA-------THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 331 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (608)
.-||++++|+|||++|++||.+. .|++|++.......... + .........+|...|.+++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-------~------~~~~~~~l~~~~~~v~s~~ 80 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-------F------HILSEFALEDNDDSPTAID 80 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-------E------EEEEEEECCTTSCCCCEEE
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-------e------eeeeEEEccCCCCceEEEE
Confidence 45899999999999999998643 59999987654311100 0 0000001125888999999
Q ss_pred EeCCEEEEEe------------CCcEEEEEcCCCceee----Ee-----cCCCCCeEEEEEcCCC-eEE--EEeCCCcEE
Q 007306 332 LRGSHLFSAS------------GGKISIFSLETFQTLA----TF-----ANPPPIATYFILLPQD-LFA--FGFDDSSIL 387 (608)
Q Consensus 332 ~s~~~l~s~~------------d~~i~vwd~~~~~~~~----~~-----~~~~~~v~~~~~~~~~-~l~--~~~~d~~i~ 387 (608)
++++.++++. |+.+++|++.+..... .. ..+...+.+++|+||| +++ +++.|++|+
T Consensus 81 ~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 81 ASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp EETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred eCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 9877777653 5679999987643221 11 1234568899999999 765 445789999
Q ss_pred EEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC
Q 007306 388 VHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 467 (608)
Q Consensus 388 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 467 (608)
+||+.+++.+..+. |...|.+++|+|||+++++++. +.+++|+..+++.. ......+|. ..|.+++|+|++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~----~~~~~~~~~---~~v~~v~fspdg 231 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCI----ARKTDFDKN---WSLSKINFIADD 231 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEE----EEECCCCTT---EEEEEEEEEETT
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcce----eeeecCCCC---CCEEEEEEcCCC
Confidence 99999999998886 7788999999999999999885 45667776664322 122344565 689999999999
Q ss_pred CEEEE-EeCC----cEEEEECCCCcee--eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEecee
Q 007306 468 IHLLS-IHEG----QIDVYEAPTLNHT--SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA 540 (608)
Q Consensus 468 ~~l~~-~~d~----~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 540 (608)
+++++ +.|+ .+++|++...... .......|...|++++|+|||++||+|+.|+.|+|||+.+++++..+..
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-- 309 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-- 309 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--
Confidence 99998 5665 5888998765432 2222234688999999999999999999999999999999998876532
Q ss_pred eccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 541 YAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 541 ~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
|| ... |++++|+| |+.+|||||.|++|+||++...
T Consensus 310 ----gH-~~~--V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 ----AH-SFA--ITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ----SS-SSC--EEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred ----cc-cCC--EEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 55 334 45999999 8999999999999999999643
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.4e-36 Score=305.66 Aligned_cols=298 Identities=10% Similarity=0.086 Sum_probs=238.4
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.++|++++|+|+|++|++++.||.|++|+..+++.. ...... +|...|.+++|+ ++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-------------------~~~~~~--~h~~~v~~~~~~~~~~ 65 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------------------QVHELK--EHNGQVTGVDWAPDSN 65 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-------------------EEEEEE--CCSSCEEEEEEETTTT
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-------------------eeeeec--CCCCcccEEEEeCCCC
Confidence 8999999999999999999999999999998766410 111111 599999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEe--cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce---EEE-eeCccccE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATF--ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT---KAK-LKGHQNRI 407 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~---~~~-~~~~~~~v 407 (608)
+|++++ |+.|++||+.+++....+ ..|...|.+++|+|++ .|++++.|+.|++||+..+.. ... ..+|...|
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 999999 999999999988755444 5788999999999999 999999999999999988763 333 35688999
Q ss_pred EEEEEeCCCCEEEEEcCCCcEEEEECCCCce-------------ecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E
Q 007306 408 TCLAYSLSLNVLVSSGADAQLCVWDAVGWKK-------------LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I 473 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~ 473 (608)
.+++|+|+++++++++.||.|++||++.... .....+. ...+|. ..|.+++|+|++++|++ +
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESSSSC---GWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECCCCS---SCEEEEEECSSSSEEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE-ecCCCC---CeEEEEEECCCCCEEEEEe
Confidence 9999999999999999999999999753110 0123333 344666 68999999999999998 5
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC--CceeE--EEec-----------
Q 007306 474 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST--LELRC--QINL----------- 538 (608)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~--~~~~~--~~~~----------- 538 (608)
.|+.|++||+++++++..+.. |...|.+++|+|++.++++| .|+.|++|++.+ ++... .+..
T Consensus 222 ~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (372)
T 1k8k_C 222 HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 298 (372)
T ss_dssp TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcch
Confidence 899999999999999888874 57899999999999998888 899999999988 53111 0000
Q ss_pred -----------e--------eeccCCCcccccccEEEEEecCCC---CEEEEEeCCCcEEEEeCCCCccc
Q 007306 539 -----------T--------AYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 539 -----------~--------~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
. .....|| ... +++++|++.++ .+|+||+.||.|++|++.+++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~--v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 299 RERFQNLDKKASSEGSAAAGAGLDSLH-KNS--VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp HHHHHHCCCCC---------CCCSSSS-SSC--EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred hhhhhhcccccccccCccccccccccc-cCC--cceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 1111255 333 45999886477 99999999999999999876653
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.4e-36 Score=306.04 Aligned_cols=285 Identities=16% Similarity=0.223 Sum_probs=230.8
Q ss_pred CCCCcEEEEEEeeCC-CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 257 SFGGRVVRLIYSHSG-DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g-~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
+|.+.|++++|+|+| ++|++|+.||.|++||+.++.... .....+|...|.+++|+
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------------~~~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS---------------------FIQGMGPGDAITGMKFNQF 129 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE---------------------EECCCSTTCBEEEEEEETT
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce---------------------eeecCCcCCceeEEEeCCC
Confidence 499999999999999 999999999999999987665411 11111599999999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCceeeEecCC---CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccE
Q 007306 334 -GSHLFSAS-GGKISIFSLETFQTLATFANP---PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 407 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 407 (608)
+++|++++ |+.|++||+.+ ..+..+..+ ...|.+++|+|++ .|++|+.|+.|++||+ +++.+..+.+|...|
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v 207 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV 207 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE
T ss_pred CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE
Confidence 47899999 99999999985 555566544 4789999999999 9999999999999999 578888999999999
Q ss_pred EEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC-CCCEEEE-EeCCcEEEEECC
Q 007306 408 TCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEGQIDVYEAP 484 (608)
Q Consensus 408 ~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~-~~d~~i~iwd~~ 484 (608)
.+++|+|+++ ++++++.|+.|++||+++.+.. ...+. .. +|. ..|.+++|+| ++++|++ +.|+.|++||++
T Consensus 208 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~-~~-~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 208 THAEFNPRCDWLMATSSVDATVKLWDLRNIKDK-NSYIA-EM-PHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEEGGGCCST-TCEEE-EE-ECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred EEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc-cceEE-Ee-cCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 9999999998 9999999999999999874321 12333 22 465 7899999999 9999998 589999999999
Q ss_pred CCceeeeecCCC-----C----------CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccc
Q 007306 485 TLNHTSQLVPDK-----M----------DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISL 549 (608)
Q Consensus 485 ~~~~~~~~~~~~-----~----------~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~ 549 (608)
+++....+..+. | ...+..++|+|++++ +|+.||.|++||+.+++.+..+..+ +| ..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~-----~~-~~ 353 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP-----NA-AG 353 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT-----TB-CS
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC-----CC-Cc
Confidence 888766665321 1 134555677777776 7778999999999999988887632 11 33
Q ss_pred ccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 550 ELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 550 ~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
.+. .++|+| ++.+|++|+ ||.|+||++.+
T Consensus 354 ~~~--~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 354 IIS--LNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCC--EEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred eEE--EEEEec-CccEEEEec-CCcEEEEecCC
Confidence 333 779999 799999997 99999999875
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2e-36 Score=305.23 Aligned_cols=293 Identities=14% Similarity=0.151 Sum_probs=234.7
Q ss_pred CCCCCcEEEEEEeeC----CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE
Q 007306 256 NSFGGRVVRLIYSHS----GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 331 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~----g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (608)
.+|.++|++++|+|+ ...+++++.++.|++|++.+++.... + .......|...|.+++
T Consensus 15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~----------~--------~~~~~~~~~~~v~~~~ 76 (366)
T 3k26_A 15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL----------L--------QSYVDADADENFYTCA 76 (366)
T ss_dssp CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE----------E--------EEEECSCTTCCEEEEE
T ss_pred cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe----------e--------eeccccCCCCcEEEEE
Confidence 359999999999984 45677777788999999876654111 1 1001113778999999
Q ss_pred Ee-C-----CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEe--
Q 007306 332 LR-G-----SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-- 400 (608)
Q Consensus 332 ~s-~-----~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~-- 400 (608)
|+ . .+|++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++ .|++|+.||.|++||+++++.+..+
T Consensus 77 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 99 3 4899999 99999999999999999999999999999999 77 9999999999999999999998888
Q ss_pred -eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc----------------------eeeeeccCCCCccc
Q 007306 401 -KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF----------------------LHSFQTGLVPETTI 457 (608)
Q Consensus 401 -~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~----------------------~~~~~~~~~~~~~~ 457 (608)
.+|...|.+++|+|++++|++++.||.|++||+++++...... ......+|. ..
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 233 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NY 233 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SC
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ce
Confidence 6799999999999999999999999999999998754321100 000122355 78
Q ss_pred eEEEEEcCCCCEEEE-EeCCcEEEEECCCCce--------------eeeecCCCCCCCeEEEEEecC--CCEEEEEEcCC
Q 007306 458 VNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH--------------TSQLVPDKMDLPITYATYSCD--GKCIYVSCKSG 520 (608)
Q Consensus 458 v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~sg~~dg 520 (608)
|.+++|+ +.++++ +.|+.|++||+.++.. +..+. .|...|.+++|+|+ +++|++|+.||
T Consensus 234 v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~l~~~~~dg 309 (366)
T 3k26_A 234 VDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD--YSQCDIWYMRFSMDFWQKMLALGNQVG 309 (366)
T ss_dssp CCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE--CSSCCSSCCCCEECTTSSEEEEECTTS
T ss_pred EEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc--ccCCcEEEEEEcCCCCCcEEEEEecCC
Confidence 9999999 668888 4899999999987654 44554 35788999999999 99999999999
Q ss_pred eEEEEeCCCCceeE----EEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 521 HVKVFDTSTLELRC----QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 521 ~i~iwd~~~~~~~~----~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
.|++||+.+++... .+. +| .+.-.+.+++|+| ++.+|++++.||.|++||+.+
T Consensus 310 ~i~vwd~~~~~~~~~~~~~~~-------~~-~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 310 KLYVWDLEVEDPHKAKCTTLT-------HH-KCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CEEEEECCSSSGGGCEEEEEC-------CT-TCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC--
T ss_pred cEEEEECCCCCCccccceEEc-------cc-ccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEecC
Confidence 99999999986543 332 33 1122355999999 899999999999999999853
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=310.71 Aligned_cols=291 Identities=11% Similarity=0.129 Sum_probs=239.8
Q ss_pred CCCCcEEEEEEeeCCC-EEEEEeCCCcEEEEec----CCCcceeeecccceeeEEeeCCCCeeeecccc-----CCCCCC
Q 007306 257 SFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW----QSNKQSLEEENVNMESQLYQPSSKLVMTNDIA-----ADPKDS 326 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 326 (608)
.|.+.|++++|+|+|+ +|++|+.||.|++|++ .++.. +|+......+...+. .+|...
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK------------YWKLTIIAELRHPFALSASSGKTTNQ 110 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------------------CEEEEEEEEEECCCCCC------CBC
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc------------cccccccccccccccccccccCCCCc
Confidence 3789999999999999 9999999999999999 76653 121111111111111 137889
Q ss_pred eEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC
Q 007306 327 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG 402 (608)
Q Consensus 327 v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~ 402 (608)
|.+++|+ +++|++++ ||.|++|| .+++.+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+..
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 189 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL 189 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec
Confidence 9999999 88999999 99999999 6788999999999999999999999 999999999999999999999998888
Q ss_pred cccc---------------EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC
Q 007306 403 HQNR---------------ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ 467 (608)
Q Consensus 403 ~~~~---------------v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~ 467 (608)
+... +.++.|+|++ .+++++.||.|++||+.+++ .+. ...+|. ..|.+++|+|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~-----~~~-~~~~~~---~~i~~~~~~~~~ 259 (425)
T 1r5m_A 190 KETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT-----PTG-KLIGHH---GPISVLEFNDTN 259 (425)
T ss_dssp C---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS-----CSE-EECCCS---SCEEEEEEETTT
T ss_pred cccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc-----eee-eeccCC---CceEEEEECCCC
Confidence 7776 8999999975 58889999999999999843 333 344566 689999999999
Q ss_pred CEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCC
Q 007306 468 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 546 (608)
Q Consensus 468 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~ 546 (608)
++|+++ .|+.|++||+.+++.+..+.. |...|.+++|+|++ ++++++.||.|++||+.+++.+..+.. |
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~ 329 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV-------D 329 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC-------T
T ss_pred CEEEEEcCCCEEEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc-------C
Confidence 999984 799999999999988888754 68899999999999 999999999999999999998877763 2
Q ss_pred cccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 547 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 547 ~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
... +.+++|+| ++.+|++++.||.|++|++.+++
T Consensus 330 -~~~--i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 330 -GVP--IFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp -TCC--EEEEEECT-TSSEEEEEETTSCEEEEECHHHH
T ss_pred -Ccc--EEEEEEcC-CCCEEEEEECCCeEEEEECCCCc
Confidence 333 44999999 79999999999999999998776
No 58
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=303.24 Aligned_cols=291 Identities=14% Similarity=0.134 Sum_probs=228.7
Q ss_pred CCCcEEEEEEeeCCCEEE-EEeC---CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe
Q 007306 258 FGGRVVRLIYSHSGDFLV-ALTQ---TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~-s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 333 (608)
|.+.|.+++|+|++..++ +|+. ||.|++|++.+++... .. .. +|...|.+++|+
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-------------------~~--~~-~~~~~v~~~~~~ 74 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-------------------LR--EI-EKAKPIKCGTFG 74 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-------------------EE--EE-EESSCEEEEECT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-------------------ee--ee-cccCcEEEEEEc
Confidence 999999999999997655 5554 8999999987665310 00 00 488999999999
Q ss_pred -C----CEEEEEe-CCcEEEEEcCCCc-eeeEecCCCCCeEEEEE------cCCC-eEEEEeCCCcEEEEeCCCCc-eEE
Q 007306 334 -G----SHLFSAS-GGKISIFSLETFQ-TLATFANPPPIATYFIL------LPQD-LFAFGFDDSSILVHCPCTKK-TKA 398 (608)
Q Consensus 334 -~----~~l~s~~-d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~-~l~~~~~d~~i~vwd~~~~~-~~~ 398 (608)
. ++|++++ ||.|++||+.+++ .+..+.+|...|.++.| +|++ .|++|+.|+.|++||+.+++ .+.
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 4 7899999 9999999999988 88899999999999955 6788 99999999999999999886 677
Q ss_pred EeeCccc----cEEEEE----EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC---CC
Q 007306 399 KLKGHQN----RITCLA----YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---DQ 467 (608)
Q Consensus 399 ~~~~~~~----~v~~~~----~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---~~ 467 (608)
.+..|.+ .+.+++ |+|+++++++++.||.|++||+++++. .. ...|. ..|.+++|+| ++
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~--~~~~~---~~v~~~~~~~~~~~~ 224 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RW--ETNIK---NGVCSLEFDRKDISM 224 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EE--EEECS---SCEEEEEESCSSSSC
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-----ee--ecCCC---CceEEEEcCCCCCCC
Confidence 7766554 789998 678999999999999999999998542 22 23444 6899999999 89
Q ss_pred CEEEE-EeCCcEEEEECCCCceeeeec---CCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCCCceeEEEec----
Q 007306 468 IHLLS-IHEGQIDVYEAPTLNHTSQLV---PDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINL---- 538 (608)
Q Consensus 468 ~~l~~-~~d~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~---- 538 (608)
.++++ +.|+.|++||+++++....+. ...|...|.+++|+|+++ ++++|+.||.|++||+.++........
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 99998 589999999998877665543 114689999999999999 899999999999999986543311000
Q ss_pred --------eeeccCCCcccccccEEEEEecCCCCEEE-EEeCCCcEEEEeCCCCc
Q 007306 539 --------TAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTNGRVHVIEPLESE 584 (608)
Q Consensus 539 --------~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s~Dg~v~iW~~~~~~ 584 (608)
......+| ... +.+++|+| ++.+|+ +++.||.|++|++.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~-~~~--v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLS-TQP--ISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCEEEEEEEEECC-SSC--EEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred cccccccceeeccccC-CCC--eeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 00001144 333 44999999 788887 89999999999998754
No 59
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-35 Score=328.37 Aligned_cols=352 Identities=9% Similarity=0.006 Sum_probs=253.1
Q ss_pred CceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC
Q 007306 212 QSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 212 ~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
....+.|+| |++|++++.|++|++||+.. +++... +. |.+.|++++|+|++++|++|+.||.|++||+.++
T Consensus 60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~----~~~~~~-~~---~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYS----QKVLTT-VF---VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp CEEEEEEET-TTEEEEEETTCEEEEEETTT----CSEEEE-EE---CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT
T ss_pred CEEEEEEcC-CCEEEEEECcCeEEEEECCC----CcEEEE-Ec---CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC
Confidence 344568999 88999999999999999984 333321 21 6789999999999999999999999999999876
Q ss_pred ccee---------------------------------eecccceeeEEeeCCCCeeeecccc----------------CC
Q 007306 292 KQSL---------------------------------EEENVNMESQLYQPSSKLVMTNDIA----------------AD 322 (608)
Q Consensus 292 ~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~ 322 (608)
.... .....+..+ +||..++........ .+
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 209 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK 209 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence 5320 012233456 999998886654321 12
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeE--ec---C-------------CCCCeEEEE-----------
Q 007306 323 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT--FA---N-------------PPPIATYFI----------- 370 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~--~~---~-------------~~~~v~~~~----------- 370 (608)
|...|.+++|+ |++|++++ ||+|++||+.+++++.. +. . |...|++++
T Consensus 210 h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ 289 (902)
T 2oaj_A 210 RTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS 289 (902)
T ss_dssp BCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred cCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence 46789999999 88999999 99999999976654321 10 0 011122222
Q ss_pred --------------------------------------------------------------------------------
Q 007306 371 -------------------------------------------------------------------------------- 370 (608)
Q Consensus 371 -------------------------------------------------------------------------------- 370 (608)
T Consensus 290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~ 369 (902)
T 2oaj_A 290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369 (902)
T ss_dssp EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence
Q ss_pred -------------------------------------------------------------------------EcCCC-e
Q 007306 371 -------------------------------------------------------------------------LLPQD-L 376 (608)
Q Consensus 371 -------------------------------------------------------------------------~~~~~-~ 376 (608)
|+|++ .
T Consensus 370 ~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~ 449 (902)
T 2oaj_A 370 ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA 449 (902)
T ss_dssp EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE
T ss_pred EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE
Confidence 23556 6
Q ss_pred EEEEeCCCcEEEEeCCCCceE--EEe----e-----CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec-----
Q 007306 377 FAFGFDDSSILVHCPCTKKTK--AKL----K-----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC----- 440 (608)
Q Consensus 377 l~~~~~d~~i~vwd~~~~~~~--~~~----~-----~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----- 440 (608)
|++|+.|++|++||+.++... ..+ . +|...|.+++|+|++++||+|+.||+|++||+.+++...
T Consensus 450 laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 450 FITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp EEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-------
T ss_pred EEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccC
Confidence 777777777777777665321 111 1 688899999999999999999999999999998652100
Q ss_pred -----------------------------------ccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECC
Q 007306 441 -----------------------------------SKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP 484 (608)
Q Consensus 441 -----------------------------------~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~ 484 (608)
..++. ...+|. +.|++++|+||| +|+++ .|++|++||++
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~h~---~~V~svafSpdG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST-AVHANK---GKTSAINNSNIG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE-EECCCS---CSEEEEEECBTS-EEEEEETTSEEEEEETT
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCccceeE-EEEcCC---CcEEEEEecCCc-EEEEEeCCCcEEEEECC
Confidence 01233 455677 799999999999 88884 88999999998
Q ss_pred CCceeee--ec-C-CCCCCCeEEEEEe-----cCC---CEEEEEEcCCeEEEEeC---CCCceeEEEeceeeccCCCccc
Q 007306 485 TLNHTSQ--LV-P-DKMDLPITYATYS-----CDG---KCIYVSCKSGHVKVFDT---STLELRCQINLTAYAQPGTISL 549 (608)
Q Consensus 485 ~~~~~~~--~~-~-~~~~~~v~~~~~s-----~~~---~~l~sg~~dg~i~iwd~---~~~~~~~~~~~~~~~~~g~~~~ 549 (608)
+...+.. +. . .+|...|++++|+ ||| ++|++|+.|++|++||+ .+|+....+..+... .| ..
T Consensus 605 ~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~--~~-~~ 681 (902)
T 2oaj_A 605 GPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNV--TS-KG 681 (902)
T ss_dssp TTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEEC--CS-SC
T ss_pred CCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceec--CC-CC
Confidence 7766542 11 1 1578999999999 886 89999999999999999 788877777644321 11 23
Q ss_pred ccccEEEE-Ee----------------------cCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 550 ELYPLVIA-AH----------------------PLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 550 ~v~~~~v~-~s----------------------p~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
.+. .++ |+ + ++.+|+++ +..||||++.++++.
T Consensus 682 ~v~--~i~~~~~~~~~~~~a~~~~~~~l~~~~~~-~~~~l~~~--~~~ir~~~~~~~k~~ 736 (902)
T 2oaj_A 682 PIH--KIDAFSKETKSSCLATIPKMQNLSKGLCI-PGIVLITG--FDDIRLITLGKSKST 736 (902)
T ss_dssp CCC--EEEEEETTTCCBCBCBHHHHHGGGGTCCC-CEEEEEEC--SSEEEEECTTCCCEE
T ss_pred ceE--EEEeEecCCCCcccCCHHHHhccCCCCCC-CeEEEEEe--ccceEEEeCccccce
Confidence 333 554 55 3 34344443 778999999997763
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.6e-35 Score=301.83 Aligned_cols=325 Identities=10% Similarity=0.066 Sum_probs=225.9
Q ss_pred eEeecC-CCCeEEEeecCCeEEEeeccCCCCCCceeeEee---c---CCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEE
Q 007306 215 ESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLL---P---DNSFGGRVVRLIYSH-SGDFLVALTQTATHKLW 286 (608)
Q Consensus 215 ~~~~s~-dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l---~---~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw 286 (608)
.+.|+| ++++|++++.||.|++||+.............. . ..+|...|.+++|+| ++.+|++++.||.|++|
T Consensus 48 ~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iw 127 (408)
T 4a11_B 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW 127 (408)
T ss_dssp EEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEE
T ss_pred EEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEe
Confidence 458999 999999999999999999986432222221000 0 024899999999999 78899999999999999
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-----CCEEEEEe-CCcEEEEEcCCCceeeEec
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-----GSHLFSAS-GGKISIFSLETFQTLATFA 360 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-----~~~l~s~~-d~~i~vwd~~~~~~~~~~~ 360 (608)
|+.++.. .... .+...+.++.|+ +.++++++ |+.|++||+.+++.+..+.
T Consensus 128 d~~~~~~---------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~ 183 (408)
T 4a11_B 128 DTNTLQT---------------------ADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ 183 (408)
T ss_dssp ETTTTEE---------------------EEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC
T ss_pred eCCCCcc---------------------ceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec
Confidence 8876654 1111 266788899988 33899999 9999999999999999999
Q ss_pred CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCc-eEEEe---------------eCccccEEEEEEeCCCCEEEEE
Q 007306 361 NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKK-TKAKL---------------KGHQNRITCLAYSLSLNVLVSS 422 (608)
Q Consensus 361 ~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~l~s~ 422 (608)
.|...|.+++|+|++ .+++|+.||.|++||++++. .+..+ .+|...|.+++|+|++++|+++
T Consensus 184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 999999999999999 48899999999999998765 33333 5688999999999999999999
Q ss_pred cCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeE
Q 007306 423 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPIT 502 (608)
Q Consensus 423 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 502 (608)
+.||.|++||+.+++............... .........+.+.+++++.++.|++||+.+++++..+.. |...|.
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~ 338 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKK---GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVD 338 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSS---CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--CSSCEE
T ss_pred cCCCeEEEEECCCCccceeccccccccccc---cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc--CCCeEE
Confidence 999999999999865322111110000111 122233334445555567999999999999999988864 689999
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 503 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 503 ~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+++|+|++++|++|+.||.|++||+.+++.+...... .. ...+.|.....+.+++.|+.+++|+..
T Consensus 339 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 339 CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT--KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------------
T ss_pred EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee--ccccccccceeecccCccCceeecCCc
Confidence 9999999999999999999999999999876654321 11 233444345567778889999999864
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-35 Score=328.96 Aligned_cols=325 Identities=13% Similarity=0.141 Sum_probs=260.1
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..++|+|||+++++++.||.|++||+.+ +.... .+. +|.++|.+++|+|+|++|++++.||.|++|++.+++.
T Consensus 17 ~~i~~sp~~~~la~~~~~g~v~iwd~~~----~~~~~-~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 89 (814)
T 3mkq_A 17 KGIDFHPTEPWVLTTLYSGRVEIWNYET----QVEVR-SIQ--VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK 89 (814)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTT----TEEEE-EEE--CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCC----CceEE-EEe--cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 3468999999999999999999999974 33332 243 3999999999999999999999999999998877654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC-ceeeEecCCCCCeEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYF 369 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~-~~~~~~~~~~~~v~~~ 369 (608)
. .... +|...|.+++|+ +++|++++ ||.|++||+.++ .....+.+|...|.++
T Consensus 90 ~---------------------~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 90 V---------------------VDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp E---------------------EEEE--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred E---------------------EEEe--cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 1 1111 599999999999 88999999 999999999987 7778888999999999
Q ss_pred EEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEeeCcc-ccEEEEEEeC--CCCEEEEEcCCCcEEEEECCCCceecccce
Q 007306 370 ILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFL 444 (608)
Q Consensus 370 ~~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 444 (608)
+|+| ++ .+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.++++++.||.|++||+.+++ .+
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-----~~ 221 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-----CV 221 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-----EE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----EE
Confidence 9999 77 99999999999999999888777776654 8899999999 99999999999999999998843 33
Q ss_pred eeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC--EEEEEEcCCe
Q 007306 445 HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK--CIYVSCKSGH 521 (608)
Q Consensus 445 ~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~sg~~dg~ 521 (608)
. ...+|. ..|.+++|+|+++++++ +.||.|++||+.+++.+..+.. |...+.+++|+|++. +++++ .|+.
T Consensus 222 ~-~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~-~~~~ 294 (814)
T 3mkq_A 222 A-TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV--GLERSWCIATHPTGRKNYIASG-FDNG 294 (814)
T ss_dssp E-EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECC--SSSSEEEEEECTTCGGGEEEEE-ETTE
T ss_pred E-EEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeec--CCCcEEEEEEccCCCceEEEEE-eCCC
Confidence 3 345666 68999999999999999 4789999999999999888865 478999999999997 45554 5777
Q ss_pred EEEEeCCCCceeEEEecee-ecc-----------------------CCC---------cccccccEEEEEecCCCCEEEE
Q 007306 522 VKVFDTSTLELRCQINLTA-YAQ-----------------------PGT---------ISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 522 i~iwd~~~~~~~~~~~~~~-~~~-----------------------~g~---------~~~~v~~~~v~~sp~d~~~las 568 (608)
+.+|++..+.....+.+.. ... .+. ......+.+++|+| ++.++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~ 373 (814)
T 3mkq_A 295 FTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTV 373 (814)
T ss_dssp EEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEE
T ss_pred EEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEE
Confidence 8899987654333322110 000 000 01112244888888 7888888
Q ss_pred EeCCCcEEEEeCCC
Q 007306 569 GLTNGRVHVIEPLE 582 (608)
Q Consensus 569 ~s~Dg~v~iW~~~~ 582 (608)
++ ||.+.+|++..
T Consensus 374 ~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 374 VG-DGEYVIYTALA 386 (814)
T ss_dssp EE-TTEEEEEETTT
T ss_pred ec-CCEEEEEECcc
Confidence 87 78888888754
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-35 Score=287.62 Aligned_cols=277 Identities=14% Similarity=0.151 Sum_probs=234.0
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+.|++++| |++++|++++.||.|++||+.++.. ..... .|...|.+++|+
T Consensus 15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~---------------------~~~~~--~~~~~v~~~~~~~~ 70 (313)
T 3odt_A 15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWL---------------------GTVVY--TGQGFLNSVCYDSE 70 (313)
T ss_dssp CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEE---------------------EEEEE--ECSSCEEEEEEETT
T ss_pred hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEE---------------------EEEee--cCCccEEEEEECCC
Confidence 349999999999 9999999999999999999866543 11111 488999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCC---ceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEE
Q 007306 334 GSHLFSAS-GGKISIFSLETF---QTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRIT 408 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 408 (608)
++++++++ |+.|++|++... +.+..+.+|...|.+++| ++ .+++++.|+.|++|| .++....+..|...+.
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVW 146 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEE
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCcee
Confidence 88999999 999999998654 667788899999999999 45 999999999999999 6788888999999999
Q ss_pred EEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCC
Q 007306 409 CLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTL 486 (608)
Q Consensus 409 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~ 486 (608)
++.|+| +++.+++++.||.|++||... ....+...|. ..+.+++|+|++. +++ +.|+.|++||++++
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDK-------VIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTE-------EEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTC
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCc-------eEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCch
Confidence 999998 999999999999999999432 3332333355 6899999999999 555 68999999999999
Q ss_pred ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEE
Q 007306 487 NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 566 (608)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 566 (608)
+.+..+.. |...|.+++|+|++ .|++++.||.|++||+.+++....+.. | ...+ .+++|+| ++. +
T Consensus 216 ~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~-------~-~~~i--~~~~~~~-~~~-~ 280 (313)
T 3odt_A 216 DVLRTYEG--HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITL-------P-AISI--WSVDCMS-NGD-I 280 (313)
T ss_dssp CEEEEEEC--CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEEC-------S-SSCE--EEEEECT-TSC-E
T ss_pred hhhhhhhc--CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEec-------c-CceE--EEEEEcc-CCC-E
Confidence 99888864 68999999999999 588999999999999999998888763 2 3334 4999999 676 6
Q ss_pred EEEeCCCcEEEEeCCCCccc
Q 007306 567 ALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 567 as~s~Dg~v~iW~~~~~~~~ 586 (608)
++++.||.|++|++.+++..
T Consensus 281 ~~~~~dg~i~iw~~~~~~~~ 300 (313)
T 3odt_A 281 IVGSSDNLVRIFSQEKSRWA 300 (313)
T ss_dssp EEEETTSCEEEEESCGGGCC
T ss_pred EEEeCCCcEEEEeCCCCcee
Confidence 67999999999999887653
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-35 Score=295.64 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=237.5
Q ss_pred ceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 213 SRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
...+.|+|+|++|++++.||.|++||+.+ +.... .+. +|...|++++|+|++++|++++.||.|++||+.+++
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~----~~~~~-~~~--~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLN----GERLG-TLD--GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTT----CCEEE-EEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCC----chhhh-hhh--hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34568999999999999999999999974 33332 243 499999999999999999999999999999887665
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C-----CcEEEEEcCCCc----------
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-----GKISIFSLETFQ---------- 354 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d-----~~i~vwd~~~~~---------- 354 (608)
. .... .+...|.+++|+ ++++++++ + +.|++||+.++.
T Consensus 108 ~---------------------~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 108 C---------------------VATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp E---------------------EEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred E---------------------EEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence 4 1111 267889999999 88999988 7 999999997653
Q ss_pred -eeeEecCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEE
Q 007306 355 -TLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 429 (608)
Q Consensus 355 -~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 429 (608)
....+..|.. .+.+++|+|++ .+++++.||.|++||+.+ ++.+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 243 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSF 243 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEE
Confidence 3344555665 89999999999 999999999999999998 788889999999999999999999999999999999
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCC--------------cEEEEECCCCceeeeecC
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--------------QIDVYEAPTLNHTSQLVP 494 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~--------------~i~iwd~~~~~~~~~~~~ 494 (608)
+||+++++ .+..+. +. ..+.+++|+|++++++++ .++ .+++||..+++.+..+..
T Consensus 244 v~d~~~~~-----~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 244 LVDVSTLQ-----VLKKYE--TD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp EEETTTCC-----EEEEEE--CS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCc-----eeeeec--CC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 99999854 333222 22 579999999999999994 565 799999999999888864
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEE
Q 007306 495 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 495 ~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 536 (608)
|...|.+++|+|++++|++++.||.|++|++.++.....+
T Consensus 314 --~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 314 --HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp --CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred --ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 6899999999999999999999999999999987654443
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-35 Score=302.03 Aligned_cols=287 Identities=18% Similarity=0.197 Sum_probs=232.8
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|...+.+.++++++..+++++.||.|++|+..++.... .+. ..|...|.+++|+ ++
T Consensus 90 ~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~----------~~~------------~~~~~~v~~v~~s~~~~ 147 (401)
T 4aez_A 90 IIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSA----------LAE------------TDESTYVASVKWSHDGS 147 (401)
T ss_dssp CCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEE----------EEE------------CCTTCCEEEEEECTTSS
T ss_pred CcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeE----------eee------------cCCCCCEEEEEECCCCC
Confidence 55554444444444568899999999999887765411 111 1488999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCC-CCceEEEeeCccccEEEEEEe
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPC-TKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~ 413 (608)
+|++++ ||.|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||++ .+..+..+.+|...|.+++|+
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 999999 999999999999999999999999999999432 99999999999999999 567788899999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E---eCCcEEEEECCCCcee
Q 007306 414 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I---HEGQIDVYEAPTLNHT 489 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~---~d~~i~iwd~~~~~~~ 489 (608)
|++++|++++.|+.|++||+++++ .+. ...+|. ..|.+++|+|++..+++ + .|+.|++||+.+++++
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~-----~~~-~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSI-----PKF-TKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSS-----EEE-EECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred CCCCEEEEEeCCCeEEEccCCCCC-----ccE-EecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 999999999999999999999843 333 344566 68999999998755554 4 4899999999999998
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEE--EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVS--CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 567 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 567 (608)
..+. +...|.+++|+|++++++++ +.||.|++||+.+++........ +| ...+. +++|+| ++.+|+
T Consensus 298 ~~~~---~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-----~h-~~~v~--~~~~s~-dg~~l~ 365 (401)
T 4aez_A 298 NTVD---AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-----AH-DTRVL--YSALSP-DGRILS 365 (401)
T ss_dssp EEEE---CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEE-----CC-SSCCC--EEEECT-TSSEEE
T ss_pred EEEe---CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEec-----CC-CCCEE--EEEECC-CCCEEE
Confidence 8885 46789999999999999995 48999999999997766654432 44 33444 999999 899999
Q ss_pred EEeCCCcEEEEeCCCCccccc
Q 007306 568 LGLTNGRVHVIEPLESEVEWG 588 (608)
Q Consensus 568 s~s~Dg~v~iW~~~~~~~~~~ 588 (608)
+++.||.|++|++.+++....
T Consensus 366 s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EECTTSEEEEEECCC------
T ss_pred EEeCCCcEEEEECCCCccccc
Confidence 999999999999999876543
No 65
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=311.66 Aligned_cols=291 Identities=15% Similarity=0.210 Sum_probs=236.2
Q ss_pred CCcEEEEEEeeCCC-EEEEE----------eCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCe
Q 007306 259 GGRVVRLIYSHSGD-FLVAL----------TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 327 (608)
Q Consensus 259 ~~~V~~~~fsp~g~-~l~s~----------s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 327 (608)
...|.+++|+|+|+ +|++| +.|+.|++|++.++... ...... .|...|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------~~~~~~---~~~~~v 70 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------KPIASL---QVDSKF 70 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------SCSCCC---CCSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------cEEEEE---ecCCce
Confidence 45788899999997 89999 88999999988766430 011111 488999
Q ss_pred EEEEEe--CCEEEEEe-CCcEEEEEcCC----CceeeEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCc---
Q 007306 328 SCFALR--GSHLFSAS-GGKISIFSLET----FQTLATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKK--- 395 (608)
Q Consensus 328 ~~v~~s--~~~l~s~~-d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~vwd~~~~~--- 395 (608)
.+++|+ +++|++++ ||.|++||+.+ .+.+..+.+|...|.+++|+|+ + +|++++.|+.|++||+.+++
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999 88999999 99999999987 4588888999999999999998 6 99999999999999999876
Q ss_pred ---eEE---EeeCccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC-
Q 007306 396 ---TKA---KLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ- 467 (608)
Q Consensus 396 ---~~~---~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~- 467 (608)
... .+.+|...|.+++|+|+ +.++++++.|+.|++||+++++............+|. ..|.+++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~ 227 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK---QQLSVVEWHPKNS 227 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC---CCEEEEEECSSCT
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC---CceEEEEECCCCC
Confidence 332 33678999999999998 7899999999999999999854322111110011123 689999999997
Q ss_pred CEEEEE-eCC---cEEEEECCCC-ceeeeecCCCCCCCeEEEEEec-CCCEEEEEEcCCeEEEEeCCCCceeEEEeceee
Q 007306 468 IHLLSI-HEG---QIDVYEAPTL-NHTSQLVPDKMDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAY 541 (608)
Q Consensus 468 ~~l~~~-~d~---~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 541 (608)
.+++++ .|+ .|++||++++ .++..+.. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+.
T Consensus 228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~---- 302 (416)
T 2pm9_A 228 TRVATATGSDNDPSILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP---- 302 (416)
T ss_dssp TEEEEEECCSSSCCCCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE----
T ss_pred CEEEEEECCCCCceEEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec----
Confidence 577774 677 9999999986 45555541 3689999999999 99999999999999999999999888876
Q ss_pred ccCCCcccccccEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCcc
Q 007306 542 AQPGTISLELYPLVIAAHPLEP-NRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 542 ~~~g~~~~~v~~~~v~~sp~d~-~~las~s~Dg~v~iW~~~~~~~ 585 (608)
+| ...+. +++|+| ++ .+|++++.||.|++|++.+++.
T Consensus 303 ---~~-~~~v~--~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 303 ---AR-GNWCF--KTKFAP-EAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp ---CS-SSCCC--CEEECT-TCTTEEEECCSSSEEEEEESCCCCC
T ss_pred ---CC-CCceE--EEEECC-CCCCEEEEEecCCcEEEEEccCCCC
Confidence 33 34455 999999 56 8999999999999999988764
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-35 Score=305.84 Aligned_cols=286 Identities=12% Similarity=0.067 Sum_probs=230.4
Q ss_pred CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 260 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
..+++++|+|+|++|++++.||.+++||..+... ... + ..| ..+....|+ +++|
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~---------------------~~~-~-~~~-~~~~~~~~~~~~~~l 112 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG---------------------SKM-L-KRA-DYTAVDTAKLQMRRF 112 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEET---------------------TTT-S-CSC-CEEEEEEECSSSCEE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccce---------------------eeE-E-ecC-CceEEEEEecCCCEE
Confidence 3456799999999999999999999998765543 110 0 023 333344566 8899
Q ss_pred EEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC
Q 007306 338 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 415 (608)
++++ ||.|++||+.+++....+.+|...|++++|+|++ .|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 192 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETT
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCC
Confidence 9999 9999999999999999889999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCC------------------CccceEEEEEcCCCCEEEE-EeCC
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVP------------------ETTIVNHIQFHPDQIHLLS-IHEG 476 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~v~~sp~~~~l~~-~~d~ 476 (608)
+++|++++.|+.|++||+++++....... ...+.. ....+.+++|+|+++++++ +.|+
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 269 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNR---KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG 269 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECB---TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeec---CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC
Confidence 99999999999999999998543221110 011110 0034445556899999998 4899
Q ss_pred cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCCCce-eEEEeceeeccCCCcccccccE
Q 007306 477 QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPL 554 (608)
Q Consensus 477 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~ 554 (608)
.|++||+++++.+..+.. .|...|.+++|+|++. +|++|+.||.|++||+.+++. +..+. +|+...+.
T Consensus 270 ~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~v~-- 339 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL-------INEGTPIN-- 339 (420)
T ss_dssp CEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-------ESTTSCEE--
T ss_pred eEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh-------ccCCCCce--
Confidence 999999999988877754 4688999999999999 999999999999999998754 55554 33344444
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 555 VIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 555 ~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
++.| | ++.+|++++.||.|++|++..++
T Consensus 340 ~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 340 NVYF-A-AGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEEE-E-TTEEEEEETTTEEEEEEEECCTT
T ss_pred EEEe-C-CCCEEEEecCCccEEEEeccCCC
Confidence 6644 5 57899999999999999998743
No 67
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-37 Score=310.94 Aligned_cols=242 Identities=13% Similarity=0.123 Sum_probs=194.5
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.++|++++|+|+|++|++|+.||.|++|++.++.. ..... ..+|...|.+++|+ ++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------~~~~~--~~~h~~~v~~~~~s~~~~ 68 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------KHART--FSDHDKIVTCVDWAPKSN 68 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------EECCC--BCCCSSCEEEEEECTTTC
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------EEEEE--EecCCceEEEEEEeCCCC
Confidence 678999999999999999999999999998866521 11111 11699999999999 78
Q ss_pred EEEEEe-CCcEEEEEcCCCc---eeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc---eEEEeeC-cccc
Q 007306 336 HLFSAS-GGKISIFSLETFQ---TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK---TKAKLKG-HQNR 406 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~---~~~~~~~-~~~~ 406 (608)
+|++++ |++|++||+.+++ ....+..|...|.+++|+|++ .|++|+.|+.|++||+++++ ....+.+ |...
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~ 148 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRST 148 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCC
Confidence 999999 9999999999877 677788899999999999999 99999999999999999887 4677877 9999
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCcee-------------cccceeeeeccCCCCccceEEEEEcCCCCEEEE-
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKL-------------CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS- 472 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~- 472 (608)
|.+++|+|++++|++++.|+.|++||+...... ....+. .. +|. ..|.+++|+|++++|++
T Consensus 149 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 149 ILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA-EY-PSG---GWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp EEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE-CC-CCS---SSEEEEEECTTSSCEEEE
T ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh-cc-cCC---ceEEEEEECCCCCEEEEE
Confidence 999999999999999999999999999643211 122333 22 666 78999999999999998
Q ss_pred EeCCcEEEEECCCCce----eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 473 IHEGQIDVYEAPTLNH----TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 473 ~~d~~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
+.|+.|++||+.+++. +..+.. |...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred eCCCcEEEEECCCCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 5899999999999887 666654 68899999999999999999877666 66655
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-35 Score=300.05 Aligned_cols=280 Identities=14% Similarity=0.175 Sum_probs=231.2
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~ 297 (608)
+++++..+++++.|+.|++||+.+ +.+..... ..|...|.+++|+|+|++|++|+.||.|++||+.+++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~----~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~---- 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADS----GSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK---- 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTT----CCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE----
T ss_pred EeecCCCEEEEECCCeEEEeeCCC----CcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE----
Confidence 444457789999999999999984 44443322 23899999999999999999999999999998876654
Q ss_pred cccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcC-CCceeeEecCCCCCeEEEEEcCCC
Q 007306 298 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLE-TFQTLATFANPPPIATYFILLPQD 375 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~ 375 (608)
..... +|...|.+++|+++++++++ ||.|++||+. .+.....+.+|...|.+++|+|++
T Consensus 169 -----------------~~~~~--~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 169 -----------------LRTMA--GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp -----------------EEEEC--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred -----------------EEEec--CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 11111 59999999999988999999 9999999998 567788899999999999999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCC-CEEEEEc--CCCcEEEEECCCCceecccceeeeeccC
Q 007306 376 -LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 376 -~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
.|++|+.|+.|++||+++++.+..+..|...|.+++|+|++ .++++++ .|+.|++||+.+++ .+..+ . +
T Consensus 230 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~-----~~~~~-~-~ 302 (401)
T 4aez_A 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA-----RVNTV-D-A 302 (401)
T ss_dssp SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC-----EEEEE-E-C
T ss_pred CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC-----EEEEE-e-C
Confidence 99999999999999999999999999999999999999976 5566654 79999999999854 33322 2 2
Q ss_pred CCCccceEEEEEcCCCCEEEE--E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 452 VPETTIVNHIQFHPDQIHLLS--I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
. ..|.+++|+|+++++++ | .|+.|++||+.++..........|...|.+++|+|+|++|++++.||.|++|++.
T Consensus 303 ~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 303 G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 2 57999999999999998 3 5899999999987766665444578999999999999999999999999999999
Q ss_pred CCceeEEE
Q 007306 529 TLELRCQI 536 (608)
Q Consensus 529 ~~~~~~~~ 536 (608)
+++.+...
T Consensus 380 ~~~~~~~~ 387 (401)
T 4aez_A 380 DGDHVKRP 387 (401)
T ss_dssp C-------
T ss_pred CCcccccc
Confidence 98876654
No 69
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.8e-35 Score=298.29 Aligned_cols=286 Identities=12% Similarity=0.134 Sum_probs=226.8
Q ss_pred eeEeecCCC-CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCC
Q 007306 214 RESTSLPDA-DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 214 ~~~~~s~dg-~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
..+.|+|++ +++++++.||.|++||+.. ...... +...+|...|.+++|+| ++++|++++.|+.|++||+.+.
T Consensus 77 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~----~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 151 (383)
T 3ei3_B 77 TSLEWHPTHPTTVAVGSKGGDIILWDYDV----QNKTSF-IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS 151 (383)
T ss_dssp EEEEECSSCTTEEEEEEBTSCEEEEETTS----TTCEEE-ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred EEEEECCCCCCEEEEEcCCCeEEEEeCCC----ccccee-eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence 345899999 9999999999999999985 333221 33245999999999999 7899999999999999998753
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
.. ..+. ...+|...|.+++|+ +++|++++ |+.|++||+ +++.+..+..|...|.+
T Consensus 152 ~~-----------~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~ 209 (383)
T 3ei3_B 152 VI-----------QVFA----------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTH 209 (383)
T ss_dssp EE-----------EEEE----------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEE
T ss_pred ce-----------EEEe----------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEE
Confidence 22 1111 111466889999999 88999999 999999999 58889999999999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCC----CceEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecc
Q 007306 369 FILLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCS 441 (608)
Q Consensus 369 ~~~~~~~--~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~ 441 (608)
++|+|++ .+++|+.|+.|++||+++ +..+..+ +|...|.+++|+| ++++|++++.|+.|++||+++++....
T Consensus 210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 288 (383)
T 3ei3_B 210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ 288 (383)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 9999999 799999999999999998 5666666 5999999999999 999999999999999999988553221
Q ss_pred cceee-eeccCCC-------CccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 007306 442 KFLHS-FQTGLVP-------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 513 (608)
Q Consensus 442 ~~~~~-~~~~~~~-------~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 513 (608)
..... ....|.. +.+.+..++|+|++++ ..+.|+.|++||+.+++++..+..+.|...+..++|+|++++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVL 367 (383)
T ss_dssp EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEE
T ss_pred cccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEE
Confidence 11000 0001110 0023445666666666 2257999999999999999999865567788888999999999
Q ss_pred EEEEcCCeEEEEeCCC
Q 007306 514 YVSCKSGHVKVFDTST 529 (608)
Q Consensus 514 ~sg~~dg~i~iwd~~~ 529 (608)
++|+ ||.|++||+++
T Consensus 368 ~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 368 ASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEE-TTEEEEEECC-
T ss_pred EEec-CCcEEEEecCC
Confidence 9997 99999999875
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.3e-36 Score=311.41 Aligned_cols=288 Identities=12% Similarity=0.135 Sum_probs=216.9
Q ss_pred eeEeecC-CCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCC
Q 007306 214 RESTSLP-DADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSN 291 (608)
Q Consensus 214 ~~~~~s~-dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~ 291 (608)
..++|+| +++.||+|+.||+|+|||+... ..... +...+|.+.|++++|+| ++++|++|+.||+|++||+++.
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~---~~~~~--~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIK---DKPTF--IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCC---SCCEE--ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCC---CceeE--EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 3458999 5679999999999999999752 11222 22245999999999998 7899999999999999998665
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
... ... ....+...+.+++|+ +++|++|+ ||.|++||+. ++.+..+.+|...|.+
T Consensus 198 ~~~-----------~~~----------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 198 ILR-----------VFA----------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEE-----------EEE----------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred cee-----------EEe----------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEe
Confidence 330 110 111345667889999 88999999 9999999986 5677888899999999
Q ss_pred EEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE---eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 369 FILLPQD--LFAFGFDDSSILVHCPCTKKTKAK---LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 369 ~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
++|+|++ ++++|+.|+.|++||+++++.... ..+|...|++++|+|+|++|++++.||.|++||+.+++......
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 9999998 788999999999999988764433 35699999999999999999999999999999999865322111
Q ss_pred eeeeeccCCCCccceEEEEEcCCCCEEEEE-------------eCCcEEEEECCCCceeeeecCCCCCCCeEEE-EEecC
Q 007306 444 LHSFQTGLVPETTIVNHIQFHPDQIHLLSI-------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYA-TYSCD 509 (608)
Q Consensus 444 ~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~s~~ 509 (608)
......... ..+....|+|++..++++ .++.|++||..+++.+..+.. .|...|.++ +|+|+
T Consensus 336 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-~~~~~v~s~~~fspd 411 (435)
T 4e54_B 336 PHPHRHFQH---LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-PESSGISSLNEFNPM 411 (435)
T ss_dssp CCCCCCCSS---SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-SSCCCCCCEEEECTT
T ss_pred ccccccccc---ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-CCCCcEEEEEEECCC
Confidence 110000000 122334566665555543 235799999999999888765 367788887 69999
Q ss_pred CCEEEEEEcCCeEEEEeCCCCcee
Q 007306 510 GKCIYVSCKSGHVKVFDTSTLELR 533 (608)
Q Consensus 510 ~~~l~sg~~dg~i~iwd~~~~~~~ 533 (608)
|++|++|+ |+.|+||++++++..
T Consensus 412 g~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 412 GDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SSCEEEEC-SSEEEECCCC-----
T ss_pred CCEEEEEc-CCcEEEEECCcCeee
Confidence 99999876 889999999988753
No 71
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.4e-34 Score=297.77 Aligned_cols=279 Identities=17% Similarity=0.210 Sum_probs=229.5
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
++||+++ .|++| .|++|++||..+ +++... +...+|...|++++|+|+|++|++|+.||+|+|||+.+++.
T Consensus 111 l~wS~~n-~lAvg-ld~tV~lWd~~t----g~~~~~-~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-- 181 (420)
T 4gga_A 111 VDWSSGN-VLAVA-LDNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 181 (420)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCC----CCEEEE-EEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE--
Confidence 4789764 66666 599999999984 555432 33355899999999999999999999999999998877654
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCC-CceeeEecCCCCCeEEEEEcC
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLP 373 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~ 373 (608)
+... .+|...+.++++++..+++|+ |+.+++||... ...+..+.+|...+..+.|+|
T Consensus 182 -------------------~~~~--~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 182 -------------------LRNM--TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp -------------------EEEE--CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -------------------EEEE--eCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 1111 169999999999999999999 99999999876 455678889999999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCc----eEEEeeCccccEEEEEEeCCC-CEEEE--EcCCCcEEEEECCCCceeccccee
Q 007306 374 QD-LFAFGFDDSSILVHCPCTKK----TKAKLKGHQNRITCLAYSLSL-NVLVS--SGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 374 ~~-~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
++ .+++++.|+.+++|+..+++ .+.....|...|.+++|+|++ ..+++ |+.|++|++||+.+++ .+.
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~-----~~~ 315 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-----CLS 315 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-----EEE
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-----cce
Confidence 99 99999999999999998765 345667799999999999965 45554 4579999999999854 333
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEEE---eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 522 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i 522 (608)
....+ ..+.++.|+|+++.++++ .|+.|++||+.+++++.++.+ |...|++++|+|||++|++|+.|++|
T Consensus 316 -~~~~~----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~D~tv 388 (420)
T 4gga_A 316 -AVDAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETL 388 (420)
T ss_dssp -EEECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred -eeccc----cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 22333 478999999999998873 589999999999999999864 79999999999999999999999999
Q ss_pred EEEeCCCCceeEEE
Q 007306 523 KVFDTSTLELRCQI 536 (608)
Q Consensus 523 ~iwd~~~~~~~~~~ 536 (608)
+|||+.........
T Consensus 389 riWdv~~~~~~~~~ 402 (420)
T 4gga_A 389 RLWRCFELDPARRR 402 (420)
T ss_dssp EEECCSCSSCC---
T ss_pred EEEECCCCCccchh
Confidence 99999876554443
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.5e-35 Score=296.24 Aligned_cols=280 Identities=10% Similarity=0.049 Sum_probs=231.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCce-eeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSEC-RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~-~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.+.|+||++++++++.|+.|++||+.. .+. ....+.+ |...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSG----NKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEET----TEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCC----CcEEeeeeecC--CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 457999999999999999999999984 321 1122433 999999999999999999999999999999866542
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCce---ee-EecCCCCCe
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQT---LA-TFANPPPIA 366 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~---~~-~~~~~~~~v 366 (608)
. ......+|...|.+++|+ +++|++++ |+.|++||+..+.. .. ...+|...|
T Consensus 87 ~---------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i 145 (372)
T 1k8k_C 87 K---------------------PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV 145 (372)
T ss_dssp E---------------------EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE
T ss_pred e---------------------eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe
Confidence 1 111111588999999999 88999999 99999999988763 33 335789999
Q ss_pred EEEEEcCCC-eEEEEeCCCcEEEEeC------------------CCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCc
Q 007306 367 TYFILLPQD-LFAFGFDDSSILVHCP------------------CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d~~i~vwd~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 427 (608)
.+++|+|++ .|++|+.|+.|++||+ ..++.+..+.+|...|.+++|+|++++|++++.|+.
T Consensus 146 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 225 (372)
T 1k8k_C 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 225 (372)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE
Confidence 999999999 9999999999999995 467888889899999999999999999999999999
Q ss_pred EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCC--Cc--ee--------------
Q 007306 428 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT--LN--HT-------------- 489 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~--~~--~~-------------- 489 (608)
|++||+++++ .+. ....|. ..|.+++|+|++++++++.|+.|++|++.+ +. .+
T Consensus 226 i~i~d~~~~~-----~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (372)
T 1k8k_C 226 VCLADADKKM-----AVA-TLASET---LPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL 296 (372)
T ss_dssp EEEEEGGGTT-----EEE-EEECSS---CCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred EEEEECCCCc-----eeE-EEccCC---CCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhc
Confidence 9999998743 334 344565 689999999999999989999999999987 42 11
Q ss_pred ----------------------eeecCCCCCCCeEEEEEe-cCC---CEEEEEEcCCeEEEEeCCCCc
Q 007306 490 ----------------------SQLVPDKMDLPITYATYS-CDG---KCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 490 ----------------------~~~~~~~~~~~v~~~~~s-~~~---~~l~sg~~dg~i~iwd~~~~~ 531 (608)
..+. .+|...|++++|. ++| .+|++|+.||.|++|++.+++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 297 TARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred chhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 1221 2578999999976 666 999999999999999998765
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=300.85 Aligned_cols=325 Identities=15% Similarity=0.164 Sum_probs=245.9
Q ss_pred cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEee
Q 007306 230 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQ 308 (608)
Q Consensus 230 ~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (608)
.++.+++|++.. ...... + .+|.+.|++++|+| +|++|++|+.||.|++|++.++..... +.
T Consensus 21 ~~~~~~v~~~~~----~~~~~~-~--~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------~~ 83 (408)
T 4a11_B 21 AESTRRVLGLEL----NKDRDV-E--RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY----------YT 83 (408)
T ss_dssp HHHHHHHHTEEE----CTTEEE-C--CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC----------EE
T ss_pred ccCcceeecccc----Ccceee-e--eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce----------Ee
Confidence 345678888864 333322 3 34999999999999 999999999999999999987765221 00
Q ss_pred CCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC---CC-eEEEE
Q 007306 309 PSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP---QD-LFAFG 380 (608)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~~~ 380 (608)
.............+|...|.+++|+ +.+|++++ ||.|++||+.+++....+. +...+.++.++| ++ .++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (408)
T 4a11_B 84 CKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVG 162 (408)
T ss_dssp ECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEE
T ss_pred ccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEE
Confidence 0000000011112599999999998 56899999 9999999999999888886 677889999988 44 89999
Q ss_pred eCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecc----------cceeeeec
Q 007306 381 FDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCS----------KFLHSFQT 449 (608)
Q Consensus 381 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~----------~~~~~~~~ 449 (608)
+.|+.|++||+.+++.+..+.+|...|.+++|+|+++ .+++++.||.|++||+++...... ........
T Consensus 163 ~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 163 TRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp ESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred cCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 9999999999999999999999999999999999998 589999999999999987541100 00011123
Q ss_pred cCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCC---CCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 450 GLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---DLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 450 ~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
+|. ..|.+++|+|++++|++ +.|+.|++||+.+++....+..... ...+........+..+++++.|+.|++|
T Consensus 243 ~~~---~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 319 (408)
T 4a11_B 243 AHN---GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319 (408)
T ss_dssp SCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEE
T ss_pred ccc---CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEE
Confidence 455 78999999999999999 5899999999998876655433211 1222222223445667777889999999
Q ss_pred eCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 526 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 526 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
|+.+++.+..+. +| ...+ .+++|+| ++.+|++++.||.|++|++.++++.
T Consensus 320 d~~~~~~~~~~~-------~~-~~~v--~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 320 TVYSGEQITMLK-------GH-YKTV--DCCVFQS-NFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp ETTTCCEEEEEC-------CC-SSCE--EEEEEET-TTTEEEEEETTSCEEEEEECC----
T ss_pred ECcCCcceeeec-------cC-CCeE--EEEEEcC-CCCEEEEECCCCeEEEEeCCCCCcc
Confidence 999999888876 34 3344 4999999 7999999999999999999998764
No 74
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=284.16 Aligned_cols=277 Identities=10% Similarity=0.069 Sum_probs=231.2
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.| |+++++++++.||.|++||+.+ ...... +.. |...|.+++|+|++++|++++.||.+++|++.....
T Consensus 24 ~~~-~~~~~l~s~~~dg~v~vw~~~~----~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~-- 93 (313)
T 3odt_A 24 VVA-VDDSKVASVSRDGTVRLWSKDD----QWLGTV-VYT--GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG-- 93 (313)
T ss_dssp EEE-EETTEEEEEETTSEEEEEEESS----SEEEEE-EEE--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--
T ss_pred EEe-cCCCEEEEEEcCCcEEEEECCC----CEEEEE-eec--CCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--
Confidence 467 9999999999999999999974 333322 333 899999999999999999999999999998755432
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcC-
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLP- 373 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~- 373 (608)
+...... .+|...|.+++|.++++++++ |+.|++|| .++....+..|...+.+++|+|
T Consensus 94 ----------------~~~~~~~--~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 94 ----------------EDPLYTL--IGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp ----------------SCC-CEE--CCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred ----------------CCcccch--hhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence 2211111 169999999999988999999 99999999 6788888999999999999998
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCceEEEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC
Q 007306 374 QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 374 ~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
++ .+++++.|+.|++|| .++....+.. |...|.+++|+|++. +++++.||.|++||+++++ .+. ...+|
T Consensus 154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~-----~~~-~~~~~ 224 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD-----VLR-TYEGH 224 (313)
T ss_dssp TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC-----EEE-EEECC
T ss_pred CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh-----hhh-hhhcC
Confidence 77 999999999999999 4567777777 899999999999998 8999999999999999843 333 34566
Q ss_pred CCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 452 VPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
. ..|++++|+|++.+++.+.|+.|++||+.+++.+..+.. |...|.+++|+|+++ +++++.||.|++||+.+++
T Consensus 225 ~---~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 225 E---SFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITL--PAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp S---SCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEEC--SSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred C---ceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEec--cCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 6 789999999999644447999999999999999888865 578999999999998 5678999999999999988
Q ss_pred eeEEEe
Q 007306 532 LRCQIN 537 (608)
Q Consensus 532 ~~~~~~ 537 (608)
......
T Consensus 299 ~~~~~~ 304 (313)
T 3odt_A 299 WASEDE 304 (313)
T ss_dssp CCC---
T ss_pred eeehhh
Confidence 766543
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.6e-35 Score=296.06 Aligned_cols=285 Identities=12% Similarity=0.083 Sum_probs=228.7
Q ss_pred eeEeecCC----CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeC----CCEEEEEeCCCcEEE
Q 007306 214 RESTSLPD----ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS----GDFLVALTQTATHKL 285 (608)
Q Consensus 214 ~~~~~s~d----g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~----g~~l~s~s~dg~i~i 285 (608)
..+.|+|+ ...+++++.++.|++||+........+..+ ....|...|.+++|+|+ |++|++|+.||.|++
T Consensus 22 ~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v 99 (366)
T 3k26_A 22 FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY--VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI 99 (366)
T ss_dssp EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE--ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec--cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence 34679984 456777777889999999853222222222 22237789999999999 679999999999999
Q ss_pred EecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEe--
Q 007306 286 WKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSHLFSAS-GGKISIFSLETFQTLATF-- 359 (608)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~-- 359 (608)
||+.+++. +.... +|...|.+++|+ +++|++++ ||.|++||+.+++.+..+
T Consensus 100 ~d~~~~~~---------------------~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 100 INPITMQC---------------------IKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp ECTTTCCE---------------------EEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred EEchhceE---------------------eeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 98876654 11111 599999999998 67999999 999999999999999888
Q ss_pred -cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee----------------------------CccccEEE
Q 007306 360 -ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK----------------------------GHQNRITC 409 (608)
Q Consensus 360 -~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~----------------------------~~~~~v~~ 409 (608)
..|...|.+++|+|++ .|++++.||.|++||+++++....+. +|...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 6899999999999999 99999999999999999876544333 38999999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceec---------ccceeeeeccCCCCccceEEEEEcCC--CCEEEEE-eCCc
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLC---------SKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLSI-HEGQ 477 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~~~-~d~~ 477 (608)
++|+ ++++++++.|+.|++||+.+..... ...+. ...+|. ..|.+++|+|+ +++|+++ .||.
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG-RFDYSQ---CDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE-EEECSS---CCSSCCCCEECTTSSEEEEECTTSC
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheec-cccccC---CcEEEEEEcCCCCCcEEEEEecCCc
Confidence 9999 7799999999999999998754311 01223 344565 68999999999 9999995 8899
Q ss_pred EEEEECCCCceee----eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 478 IDVYEAPTLNHTS----QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 478 i~iwd~~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
|++||+.++++.. .+..+.|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 311 i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999876443 565544479999999999999999999999999999863
No 76
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.6e-35 Score=302.46 Aligned_cols=304 Identities=11% Similarity=0.102 Sum_probs=224.0
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCe--eeeccccCCCC-----------
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKL--VMTNDIAADPK----------- 324 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------- 324 (608)
|.+.|++++|+|+|++||+|+.||.|+||++.++..... ...+. +... +. +|.
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~------------~~~~~~~~~~~-~~-~h~~~~~~~~~~~~ 92 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS------------HSRGEYNVYST-FQ-SHEPEFDYLKSLEI 92 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C------------CCCCCEEEEEE-EE-CCCCEEEGGGTEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc------------ccccceeEecc-cc-cccccccccccccc
Confidence 688999999999999999999999999999877652100 00011 1111 11 576
Q ss_pred -CCeEEEEEe--C--CEEEEEe-CCcEEEEEcCCCcee---------------------------------------eE-
Q 007306 325 -DSISCFALR--G--SHLFSAS-GGKISIFSLETFQTL---------------------------------------AT- 358 (608)
Q Consensus 325 -~~v~~v~~s--~--~~l~s~~-d~~i~vwd~~~~~~~---------------------------------------~~- 358 (608)
..|.+++|+ + ..|++++ |++|++||+.++... ..
T Consensus 93 ~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (447)
T 3dw8_B 93 EEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF 172 (447)
T ss_dssp CCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE
T ss_pred cCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe
Confidence 889999999 4 6899999 999999999765432 12
Q ss_pred ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC-CceEE-------EeeCccccEEEEEEeCCC-CEEEEEcCCCcE
Q 007306 359 FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT-KKTKA-------KLKGHQNRITCLAYSLSL-NVLVSSGADAQL 428 (608)
Q Consensus 359 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i 428 (608)
..+|...|.+++|+|++ .|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+|++ ++|++++.||.|
T Consensus 173 ~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 173 ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 35799999999999999 99998 799999999984 44444 256799999999999998 999999999999
Q ss_pred EEEECCCCceecccceeeeeccCCC---------CccceEEEEEcCCCCEEEEEeCCcEEEEECCC-CceeeeecCCCCC
Q 007306 429 CVWDAVGWKKLCSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPT-LNHTSQLVPDKMD 498 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~-~~~~~~~~~~~~~ 498 (608)
++||+++++... ..+. ...+|.. +...|.+++|+|+|++|+++.++.|++||+++ ++++..+..+...
T Consensus 252 ~iwd~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~ 329 (447)
T 3dw8_B 252 RLCDMRASALCD-RHSK-LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYL 329 (447)
T ss_dssp EEEETTTCSSSC-TTCE-EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGG
T ss_pred EEEECcCCcccc-ceee-EeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccc
Confidence 999999854211 1123 3344430 00279999999999999997559999999997 8888877653210
Q ss_pred C-------------CeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec-------------cCC-------
Q 007306 499 L-------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------------QPG------- 545 (608)
Q Consensus 499 ~-------------~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~g------- 545 (608)
. .+..++|+|++++|++|+.||.|++||+.+++.+.. ..+... ..+
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL-EASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE-ECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee-eecccccccccccCCccccccCCcccccc
Confidence 0 134599999999999999999999999999886532 211000 000
Q ss_pred ---CcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 546 ---TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 546 ---~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
.....-.++.++|+| ++++||+++.++ +++|.-.
T Consensus 409 ~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEECC
T ss_pred cccccccCCceeEEEECC-CCCEEEEEecce-eeeeccc
Confidence 001111245899999 799999998876 7888643
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.5e-34 Score=293.37 Aligned_cols=283 Identities=14% Similarity=0.163 Sum_probs=234.3
Q ss_pred CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 260 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
-.+..|+||+++ .||+| .|++|+|||..+++. .+.....+|...|++|+|+ |++|
T Consensus 106 ~y~~~l~wS~~n-~lAvg-ld~tV~lWd~~tg~~---------------------~~~~~~~~~~~~V~sv~fspdg~~l 162 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYL 162 (420)
T ss_dssp TTCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEE
T ss_pred ccceeEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCcEEEEEECCCCCEE
Confidence 356789999864 66665 499999988776654 2211122588899999999 8999
Q ss_pred EEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCC
Q 007306 338 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~ 415 (608)
++|+ ||+|++||+.+++.+..+.+|...+.++++++. .+++|+.|+.+++||.... ..+..+.+|...+..+.|+|+
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~ 241 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCC-EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCC
Confidence 9999 999999999999999999999999998877432 9999999999999998864 556788899999999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE-EEE---eCCcEEEEECCCCceeee
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL-LSI---HEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l-~~~---~d~~i~iwd~~~~~~~~~ 491 (608)
++++++++.|+.+++||..+++... ..+. ....|. ..|.+++|+|++..+ +++ .|+.|++||+.++++...
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~-~~~~-~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~ 316 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGW-VPLQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 316 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCS-CCSE-EECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred CCeeeeeeccccceEEeeccccccc-eeee-eecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence 9999999999999999998755322 1223 344555 689999999986544 442 589999999999999888
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
+.. ...+.++.|+|+++.+++++ .||.|+|||+.+++.+..+. || ...| ++++|+| |+.+||||
T Consensus 317 ~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH-~~~V--~~l~~sp-dg~~l~S~ 382 (420)
T 4gga_A 317 VDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRV--LSLTMSP-DGATVASA 382 (420)
T ss_dssp EEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCE--EEEEECT-TSSCEEEE
T ss_pred ecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CC-CCCE--EEEEEcC-CCCEEEEE
Confidence 854 57899999999999998866 68999999999999988876 55 4444 4999999 89999999
Q ss_pred eCCCcEEEEeCCCCcc
Q 007306 570 LTNGRVHVIEPLESEV 585 (608)
Q Consensus 570 s~Dg~v~iW~~~~~~~ 585 (608)
+.||+|+|||+.+..+
T Consensus 383 s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 383 AADETLRLWRCFELDP 398 (420)
T ss_dssp ETTTEEEEECCSCSSC
T ss_pred ecCCeEEEEECCCCCc
Confidence 9999999999987554
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-34 Score=281.87 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=203.2
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+.|++++|+|+|++||+|+.|++|+||++..... ..+..+ .+|..+|++++|+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------~~~~~l--~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHP 64 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------CCCEEE--CCCSSCEEEEEECCG
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------EEEEEE--ccccCCeEEEEecCC
Confidence 34999999999999999999999999999999864321 111111 1799999999996
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCc--eeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCc--eEEEeeCc
Q 007306 334 --GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGH 403 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~~~--~~~~~~~~ 403 (608)
+++|++|+ |++|++||+.+++ .+..+..|...|.+++|+|+ + +|++|+.|+.|++||++++. ....+.+|
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 67999999 9999999999874 56677889999999999998 7 99999999999999998763 24567789
Q ss_pred cccEEEEEEeCC-------------CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCC---
Q 007306 404 QNRITCLAYSLS-------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQ--- 467 (608)
Q Consensus 404 ~~~v~~~~~~~~-------------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~--- 467 (608)
...|.+++|+|+ +++|++|+.|++|++||+++++... .... .+.+|. ..|.+++|+|++
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~-~~~~-~l~~H~---~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLR 219 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSS
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE-EEEE-EecCCC---CceEEEEECCCCCCc
Confidence 999999999997 5799999999999999998743211 1222 456787 799999999995
Q ss_pred CEEEE-EeCCcEEEEECCCCc---eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 468 IHLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 468 ~~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
.+|++ +.|++|++||+++.. ....+....|...|.+++|+|+|++|++++.||.|++|+...
T Consensus 220 ~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 220 SYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 78888 589999999997643 112232234688999999999999999999999999999863
No 79
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-33 Score=294.54 Aligned_cols=278 Identities=13% Similarity=0.164 Sum_probs=234.6
Q ss_pred CCCcE-EEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CC
Q 007306 258 FGGRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 335 (608)
Q Consensus 258 h~~~V-~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~ 335 (608)
|.+.| .++.| ++++|++|+.||+|++||+.+++. +.... +|...|.+++|+ +.
T Consensus 120 h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~V~~l~~~~~~ 174 (464)
T 3v7d_B 120 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF---------------------LLQLS--GHDGGVWALKYAHGG 174 (464)
T ss_dssp CSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE---------------------EEEEC--CCSSCEEEEEECSTT
T ss_pred CCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE---------------------EEEEe--CCCcCEEEEEEcCCC
Confidence 88775 55554 678999999999999998876654 11111 699999999999 66
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEc--CCC-eEEEEeCCCcEEEEeCCCCce---------------
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILL--PQD-LFAFGFDDSSILVHCPCTKKT--------------- 396 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~-~l~~~~~d~~i~vwd~~~~~~--------------- 396 (608)
.+++|+ ||+|++||+.+++.+..+.+|...|.+++|+ +++ .+++|+.|+.|++||+.++..
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 999999 9999999999999999999999999999998 577 999999999999999987652
Q ss_pred --------EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 397 --------KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 397 --------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
+..+.+|...|.++ +++++++++++.||.|++||+++++ .+. ...+|. ..|.+++|+|+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~-----~~~-~~~~~~---~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK-----CLY-ILSGHT---DRIYSTIYDHERK 323 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE-----EEE-EECCCS---SCEEEEEEETTTT
T ss_pred ccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc-----EEE-EecCCC---CCEEEEEEcCCCC
Confidence 45677888888886 6778999999999999999998843 344 445676 7899999999999
Q ss_pred EEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCc
Q 007306 469 HLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 547 (608)
Q Consensus 469 ~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~ 547 (608)
++++ +.|+.|++||+++++++..+.. |...|.+++|+ +++|++|+.||.|++||+.++....... +
T Consensus 324 ~l~sg~~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---------~ 390 (464)
T 3v7d_B 324 RCISASMDTTIRIWDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---------H 390 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---------C
T ss_pred EEEEEeCCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec---------C
Confidence 9999 5899999999999999988864 68999999997 6899999999999999999987655542 1
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 007306 548 SLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 588 (608)
Q Consensus 548 ~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~ 588 (608)
...+. .++|+| ++.++++|+ ||.|++||+.+++....
T Consensus 391 ~~~~~--~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 391 TNLSA--ITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp TTCCC--EEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred CCCcc--EEEEEe-CCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 33344 788999 789999998 89999999999887543
No 80
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.9e-34 Score=292.23 Aligned_cols=284 Identities=12% Similarity=0.143 Sum_probs=232.8
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCC---ceeeEeecCCCCCCcEEEEEEeeC----C---CEEEEEeCCCcEE
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPS---ECRTLLLPDNSFGGRVVRLIYSHS----G---DFLVALTQTATHK 284 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~---~~~~~~l~~~~h~~~V~~~~fsp~----g---~~l~s~s~dg~i~ 284 (608)
.+.|+| ++|++++.||+|++||+....... .... +. +|...|.+++|+|+ | ++|++++.||.|+
T Consensus 21 ~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~--~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 21 SVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp EEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred EEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceE--Ee--cCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 457888 899999999999999998532100 1222 43 49999999999999 9 9999999999999
Q ss_pred EEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCC-----CCCeEEEEEe------CCE-EEEEe-CCcEEEEEcC
Q 007306 285 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-----KDSISCFALR------GSH-LFSAS-GGKISIFSLE 351 (608)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~s------~~~-l~s~~-d~~i~vwd~~ 351 (608)
+|++.++.... ....... ..| ...|.+++|+ +++ |++++ ||.|++||+.
T Consensus 95 iw~~~~~~~~~----------------~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 156 (397)
T 1sq9_A 95 FYRITREDETK----------------KVIFEKL--DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEECTTTC----------------CEEEEEE--CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEE
T ss_pred EEEccCCcccc----------------cccceee--cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCC
Confidence 99987654200 0001110 035 5899999997 678 99999 9999999999
Q ss_pred C------Cceee-----Ee-------cCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeC---c---cccE
Q 007306 352 T------FQTLA-----TF-------ANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG---H---QNRI 407 (608)
Q Consensus 352 ~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~---~---~~~v 407 (608)
+ ++.+. .+ ..|...|.+++|+|++.+++++.|+.|++||+++++.+..+.. | ...|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 8 77766 77 4588899999999988888899999999999999999999998 8 9999
Q ss_pred EEEEEeCCCCEEEEEcCC---CcEEEEECCCCceecccceeeeecc-------------CCCCccceEEEEEcCCCCEEE
Q 007306 408 TCLAYSLSLNVLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTG-------------LVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~v~~sp~~~~l~ 471 (608)
.+++|+|++++|++++.| +.|++||+++++ .+. ...+ |. ..|.+++|+|++++|+
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE-----RIG-SLSVPTHSSQASLGEFAHS---SWVMSLSFNDSGETLC 307 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCC-----EEE-EECBC--------CCBSBS---SCEEEEEECSSSSEEE
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCc-----ccc-eeccCcccccccccccccC---CcEEEEEECCCCCEEE
Confidence 999999999999999999 999999998854 333 2333 55 7899999999999999
Q ss_pred E-EeCCcEEEEECCCCceeeeecCC----CC---------------CCCeEEEEEecCC----------CEEEEEEcCCe
Q 007306 472 S-IHEGQIDVYEAPTLNHTSQLVPD----KM---------------DLPITYATYSCDG----------KCIYVSCKSGH 521 (608)
Q Consensus 472 ~-~~d~~i~iwd~~~~~~~~~~~~~----~~---------------~~~v~~~~~s~~~----------~~l~sg~~dg~ 521 (608)
+ +.|+.|++||+.+++.+..+... .| ...|.+++|+|++ ++|++|+.||.
T Consensus 308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence 9 58999999999999998888721 24 8899999999998 79999999999
Q ss_pred EEEEeCCCCc
Q 007306 522 VKVFDTSTLE 531 (608)
Q Consensus 522 i~iwd~~~~~ 531 (608)
|++|++.+|+
T Consensus 388 i~iw~~~~g~ 397 (397)
T 1sq9_A 388 IRWFREAGGK 397 (397)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=291.35 Aligned_cols=284 Identities=12% Similarity=0.124 Sum_probs=223.9
Q ss_pred eeEeecCCCCeEE-Eeec---CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeC---CCEEEEEeCCCcEEEE
Q 007306 214 RESTSLPDADSAV-CAKS---LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS---GDFLVALTQTATHKLW 286 (608)
Q Consensus 214 ~~~~~s~dg~~l~-~~~~---d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~---g~~l~s~s~dg~i~iw 286 (608)
..+.|+|++..++ +++. ||.|++||+.. +.+...... +|...|.+++|+|+ |++|++|+.||.|++|
T Consensus 22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp EEEEECTTSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred EEEEEcCCCceEEEecCccCCCcEEEEEeCCC----Ccccceeee--cccCcEEEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 3468999997554 5555 99999999984 444332222 38999999999998 7999999999999999
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE------e--CCEEEEEe-CCcEEEEEcCCCc-ee
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL------R--GSHLFSAS-GGKISIFSLETFQ-TL 356 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~------s--~~~l~s~~-d~~i~vwd~~~~~-~~ 356 (608)
|+.++.... ..+ .+|...|.++.| + +++|++++ |+.|++||+.+++ .+
T Consensus 96 d~~~~~~~~---------~~~-------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~ 153 (357)
T 3i2n_A 96 NLEAPEMPV---------YSV-------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV 153 (357)
T ss_dssp CTTSCSSCS---------EEE-------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred eCCCCCccE---------EEE-------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence 987765100 011 169999999965 4 77999999 9999999999887 67
Q ss_pred eEecCCCC----CeEEEE----EcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC---CCCEEEEEcC
Q 007306 357 ATFANPPP----IATYFI----LLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGA 424 (608)
Q Consensus 357 ~~~~~~~~----~v~~~~----~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~ 424 (608)
..+..+.+ .+.+++ |+|++ .+++++.|+.|++||+++++.... ..|...|.+++|+| ++.++++++.
T Consensus 154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~ 232 (357)
T 3i2n_A 154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSL 232 (357)
T ss_dssp EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEES
T ss_pred eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECC
Confidence 77766554 788888 67899 999999999999999999887554 45889999999999 9999999999
Q ss_pred CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC-EEEE-EeCCcEEEEECCCCc---------------
Q 007306 425 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQIDVYEAPTLN--------------- 487 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~-~~d~~i~iwd~~~~~--------------- 487 (608)
||.|++||+++++........ ...+|. ..|.+++|+|+++ ++++ +.|+.|++||++++.
T Consensus 233 dg~i~i~d~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 233 EGKFHVFDMRTQHPTKGFASV-SEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp TTEEEEEEEEEEETTTEEEEE-EEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred CCeEEEEeCcCCCcccceeee-ccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence 999999999874432222111 223666 7899999999998 6777 589999999987543
Q ss_pred ----eeeeecCCCCCCCeEEEEEecCCCEEE-EEEcCCeEEEEeCCCCce
Q 007306 488 ----HTSQLVPDKMDLPITYATYSCDGKCIY-VSCKSGHVKVFDTSTLEL 532 (608)
Q Consensus 488 ----~~~~~~~~~~~~~v~~~~~s~~~~~l~-sg~~dg~i~iwd~~~~~~ 532 (608)
.+..+. .|...|.+++|+|++++|+ +++.||.|++||+.+.+.
T Consensus 309 ~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 309 GSVSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CEEEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cccceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 344454 4689999999999999998 899999999999987653
No 82
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=278.21 Aligned_cols=274 Identities=16% Similarity=0.196 Sum_probs=224.9
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
++||+++ .||+| .|++|+|||+.+ +++... +..++|...|++++|+|+|++|++|+.||+|++|++.+++.
T Consensus 31 l~WS~~~-~lAvg-~D~tV~iWd~~t----g~~~~~-~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-- 101 (318)
T 4ggc_A 31 VDWSSGN-VLAVA-LDNSVYLWSASS----GDILQL-LQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 101 (318)
T ss_dssp EEECTTS-EEEEE-ETTEEEEEETTT----CCEEEE-EECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred EEECCCC-EEEEE-eCCEEEEEECCC----CCEEEE-EEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence 3799987 66655 599999999984 554432 34455899999999999999999999999999998877754
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCC-ceeeEecCCCCCeEEEEEcC
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETF-QTLATFANPPPIATYFILLP 373 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~ 373 (608)
+.... +|...+.++.+.+..+++++ ++.+++|+...+ ..+..+.+|...+.++.+++
T Consensus 102 -------------------~~~~~--~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 102 -------------------LRNMT--SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp -------------------EEEEE--CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred -------------------EEEec--CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 11111 68888888777799999999 999999998775 55677889999999999999
Q ss_pred CC-eEEEEeCCCcEEEEeCCCCce----EEEeeCccccEEEEEEeCCCCE---EEEEcCCCcEEEEECCCCceeccccee
Q 007306 374 QD-LFAFGFDDSSILVHCPCTKKT----KAKLKGHQNRITCLAYSLSLNV---LVSSGADAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 374 ~~-~l~~~~~d~~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---l~s~~~d~~i~vwd~~~~~~~~~~~~~ 445 (608)
++ .+++++.|+.|++||+.+++. ......+.+.|.++.++|++.. +++++.++.|++||...... ..
T Consensus 161 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~ 235 (318)
T 4ggc_A 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LS 235 (318)
T ss_dssp TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EE
T ss_pred CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cc
Confidence 99 999999999999999998753 3445568889999999997653 34667889999999988432 22
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEE-E--eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLS-I--HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 522 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i 522 (608)
.. .+. ..+..+.|+|++..+++ + .|+.|++||+++++++.++.+ |...|++++|+|+|++|++|+.||+|
T Consensus 236 -~~-~~~---~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v 308 (318)
T 4ggc_A 236 -AV-DAH---SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETL 308 (318)
T ss_dssp -EE-ECS---SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEE
T ss_pred -cc-cce---eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeE
Confidence 12 222 57999999999998887 3 589999999999999999864 79999999999999999999999999
Q ss_pred EEEeCCCCc
Q 007306 523 KVFDTSTLE 531 (608)
Q Consensus 523 ~iwd~~~~~ 531 (608)
+|||+....
T Consensus 309 ~iWd~~~~d 317 (318)
T 4ggc_A 309 RLWRCFELD 317 (318)
T ss_dssp EEECCSCCC
T ss_pred EEEECCCCC
Confidence 999997653
No 83
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.1e-34 Score=290.10 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=215.1
Q ss_pred EeecCCCCeEEEeecCC-------eEEEeeccCCCCCC-----ceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC----
Q 007306 216 STSLPDADSAVCAKSLE-------KSVNLKLQLINEPS-----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---- 279 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~-------~i~iWd~~~~~~~~-----~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~---- 279 (608)
++|+|||+.|++|+.+. .|++|++....... ....+.|. +|.+.|.++++ +++.+++|..
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~--~~~~~v~s~~~--~~~~~~~g~~~~~~ 95 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE--DNDDSPTAIDA--SKGIILVGCNENST 95 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC--TTSCCCCEEEE--ETTEEEEECCCCHH
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc--CCCCceEEEEe--CCCEEEEEECCCcc
Confidence 47999999999997643 59999987532211 11223343 38888888765 5667777754
Q ss_pred -------CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe---CCcEEE
Q 007306 280 -------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISI 347 (608)
Q Consensus 280 -------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~---d~~i~v 347 (608)
|+.+++|++.+...... .+. .........+...+.+++|+ |+++++++ |++|++
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLE---------FLT-----SVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEE---------EEE-----EECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred EEEEecCCCcEEEEEecCCCceEE---------Eee-----eeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 45566666544332111 111 01111111456779999999 77776544 799999
Q ss_pred EEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE--EeeCccccEEEEEEeCCCCEEEEEcC
Q 007306 348 FSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSGA 424 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~ 424 (608)
||+.+++++..+. |...|.+++|+||| ++++++.+ .+.+|+..+++.+. ...+|...|.+++|+|+++.+++++.
T Consensus 162 wd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 162 IDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp EETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred eECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999998886 77789999999999 88888854 56677767676553 34568889999999999999999998
Q ss_pred CC----cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCC
Q 007306 425 DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 499 (608)
Q Consensus 425 d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 499 (608)
|+ .+++||+........ ... ...+|. ..|++++|+|+|++|++ +.|++|+|||+++++++.++.. +|..
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-gH~~ 313 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVL-RSK-QVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-AHSF 313 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEE-EEE-EEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-SSSS
T ss_pred CCcceeEEeecccccceecce-eee-eecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-cccC
Confidence 87 688899876432211 112 344666 68999999999999999 5899999999999999888754 4799
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 500 PITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 500 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
.|++++|||||++|++||.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999999654
No 84
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=277.35 Aligned_cols=281 Identities=15% Similarity=0.179 Sum_probs=229.2
Q ss_pred cEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEE
Q 007306 261 RVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF 338 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~ 338 (608)
...+|+||+++ +||+| .|++|+|||+.+++. ++.....+|...|.+++|+ +++|+
T Consensus 27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~---------------------~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDI---------------------LQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCE---------------------EEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred cceEEEECCCC-EEEEE-eCCEEEEEECCCCCE---------------------EEEEEecCCCCeEEEEEECCCCCEEE
Confidence 35779999987 56655 599999888776654 2222222588999999999 89999
Q ss_pred EEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEEeCC
Q 007306 339 SAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 339 s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~ 415 (608)
+|+ ||+|++||+.+++++..+.+|...+.++.+ ++ .+++|+.++.+++|+...+ ..+..+.+|...+.++.++++
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence 999 999999999999999999999988876554 55 8999999999999998876 556778899999999999999
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE---E-eCCcEEEEECCCCceeee
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS---I-HEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~---~-~d~~i~iwd~~~~~~~~~ 491 (608)
++++++++.|+.|++||+++++..... .. ....+. +.|.+++++|++..++. + .++.|++||.........
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVP-LQ-TFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCC-SE-EECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred CCEEEEEecCcceeEEECCCCcccccc-ee-eecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 999999999999999999886532221 11 233444 68999999998765442 2 578999999988887666
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEE--cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSC--KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
.. +...+..+.|+|++..+++++ .|+.|++||+.+++++..+. || ...|. +++|+| |+.+||||
T Consensus 237 ~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH-~~~V~--~l~~sp-dg~~l~S~ 302 (318)
T 4ggc_A 237 VD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GH-TSRVL--SLTMSP-DGATVASA 302 (318)
T ss_dssp EE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CC-SSCEE--EEEECT-TSSCEEEE
T ss_pred cc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CC-CCCEE--EEEEcC-CCCEEEEE
Confidence 53 478899999999999888765 78999999999999998876 55 44444 999999 89999999
Q ss_pred eCCCcEEEEeCCCCcc
Q 007306 570 LTNGRVHVIEPLESEV 585 (608)
Q Consensus 570 s~Dg~v~iW~~~~~~~ 585 (608)
|.||+|+|||+.+.+|
T Consensus 303 s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 303 AADETLRLWRCFELDP 318 (318)
T ss_dssp ETTTEEEEECCSCCCC
T ss_pred ecCCeEEEEECCCCCC
Confidence 9999999999987653
No 85
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.7e-34 Score=319.65 Aligned_cols=284 Identities=15% Similarity=0.243 Sum_probs=243.6
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
|.+.|.+++|+|+|++|++++.||.|+|||+.++.. ..... +|..+|.+++|+ ++
T Consensus 12 h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~---------------------~~~~~--~~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE---------------------VRSIQ--VTETPVRAGKFIARKN 68 (814)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE---------------------EEEEE--CCSSCEEEEEEEGGGT
T ss_pred CCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce---------------------EEEEe--cCCCcEEEEEEeCCCC
Confidence 999999999999999999999999999998876653 11111 599999999999 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~ 412 (608)
+|++++ ||.|++||+.+++.+..+.+|...|++++|+|++ .|++++.||.|++||+.++ .....+.+|...|.+++|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~ 148 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE
Confidence 999999 9999999999999999999999999999999999 9999999999999999987 677888899999999999
Q ss_pred eC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC--CCCEEEEE-eCCcEEEEECCCCce
Q 007306 413 SL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLSI-HEGQIDVYEAPTLNH 488 (608)
Q Consensus 413 ~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~~-~d~~i~iwd~~~~~~ 488 (608)
+| ++..+++++.||.|++||+.++. ........+. ..+.+++|+| ++.+++++ .|+.|++||+.+++.
T Consensus 149 ~p~~~~~l~~~~~dg~v~vwd~~~~~-----~~~~~~~~~~---~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 149 NPKDPSTFASGCLDRTVKVWSLGQST-----PNFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCSS-----CSEEEECCCT---TCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCc-----ceeEEecCCC---CCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 99 88999999999999999998743 2332333443 5799999999 99999995 889999999999999
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEE
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIA 567 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~la 567 (608)
+..+.. |...|.+++|+|++++|++++.||.|++||+.+++....+..+ ...++ +++|+| ++. .++
T Consensus 221 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--------~~~v~--~~~~~~-~~~~~~~ 287 (814)
T 3mkq_A 221 VATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG--------LERSW--CIATHP-TGRKNYI 287 (814)
T ss_dssp EEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS--------SSSEE--EEEECT-TCGGGEE
T ss_pred EEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC--------CCcEE--EEEEcc-CCCceEE
Confidence 888864 6889999999999999999999999999999999988877532 33444 999999 554 334
Q ss_pred EEeCCCcEEEEeCCCCcc
Q 007306 568 LGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 568 s~s~Dg~v~iW~~~~~~~ 585 (608)
+++.|+.+.+|++..+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 288 ASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEETTEEEEEECSCCSC
T ss_pred EEEeCCCEEEEEcCCCCc
Confidence 444567799999876544
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-35 Score=299.36 Aligned_cols=281 Identities=10% Similarity=0.028 Sum_probs=214.1
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
+.|+|||++|++++.|+.|++||+.... ..+.. .+. +|...|++++|+|+|++|++++.||+|++||+.++...
T Consensus 17 ~~~s~~g~~l~~~~~d~~i~iw~~~~~~--~~~~~-~~~--~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~- 90 (377)
T 3dwl_C 17 HAFNSQRTEFVTTTATNQVELYEQDGNG--WKHAR-TFS--DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW- 90 (377)
T ss_dssp CEECSSSSEEECCCSSSCBCEEEEETTE--EEECC-CBC--CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC-
T ss_pred EEECCCCCEEEEecCCCEEEEEEccCCc--eEEEE-EEe--cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce-
Confidence 3799999999999999999999998410 02221 243 49999999999999999999999999999998766410
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc---eeeEecC-CCCCeEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ---TLATFAN-PPPIATY 368 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~---~~~~~~~-~~~~v~~ 368 (608)
. .... ..+|...|.+++|+ +++|++++ |+.|++||+.+++ ....+.. |...|.+
T Consensus 91 ------------~----~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~ 151 (377)
T 3dwl_C 91 ------------K----QTLV---LLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILS 151 (377)
T ss_dssp ------------C----CEEE---CCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEE
T ss_pred ------------e----eeeE---ecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEE
Confidence 0 0111 11599999999999 78999999 9999999999887 4677777 9999999
Q ss_pred EEEcCCC-eEEEEeCCCcEEEEeCC------------------CCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEE
Q 007306 369 FILLPQD-LFAFGFDDSSILVHCPC------------------TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLC 429 (608)
Q Consensus 369 ~~~~~~~-~l~~~~~d~~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 429 (608)
++|+|++ +|++|+.|+.|++||+. .++++..+ +|...|.+++|+|++++|++++.||.|+
T Consensus 152 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 152 LDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVT 230 (377)
T ss_dssp EEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC
T ss_pred EEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEE
Confidence 9999999 99999999999999985 35566667 8999999999999999999999999999
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCc--eee-----------------
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN--HTS----------------- 490 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~--~~~----------------- 490 (608)
+||+.+++... ..+. ...+|. ..|.+++|+|++++|+++.++.+.+|+..... ...
T Consensus 231 iwd~~~~~~~~-~~~~-~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T 3dwl_C 231 IAYPSAPEQPP-RALI-TVKLSQ---LPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNT 305 (377)
T ss_dssp -CEECSTTSCE-EECC-CEECSS---SCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSB
T ss_pred EEECCCCCCcc-eeeE-eecCCC---CceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccc
Confidence 99999854311 1133 445666 68999999999999999877777788875221 000
Q ss_pred -----------------eec--------------CCCCCCCeEEEEEecCC-C---EEEEEEcCCeEEEEeC
Q 007306 491 -----------------QLV--------------PDKMDLPITYATYSCDG-K---CIYVSCKSGHVKVFDT 527 (608)
Q Consensus 491 -----------------~~~--------------~~~~~~~v~~~~~s~~~-~---~l~sg~~dg~i~iwd~ 527 (608)
.+. ...|...|+++++.+.. . .|++|+.||.|++||+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 306 GEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 01278899999976543 3 6999999999999985
No 87
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.9e-34 Score=279.89 Aligned_cols=249 Identities=11% Similarity=0.068 Sum_probs=203.9
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCC--CceeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLET--FQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~ 393 (608)
+|...|++++|+ |++|++|+ |++|++||+.+ ++.+..+.+|...|.+++|+++ + .|++|+.|++|++||+.+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 799999999999 89999999 99999999974 4678899999999999999864 7 999999999999999998
Q ss_pred Cc--eEEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC---
Q 007306 394 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 466 (608)
Q Consensus 394 ~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--- 466 (608)
++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+++.... ... ...+|. ..|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---~~~-~~~~h~---~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---SPI-IIDAHA---IGVNSASWAPATIE 159 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---CCE-EEECCS---SCEEEEEECCCC--
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---eee-eeeccc---CccceEeecCCccc
Confidence 74 55677889999999999997 899999999999999999874311 112 455777 78999999997
Q ss_pred ----------CCEEEE-EeCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecCC---CEEEEEEcCCeEEEEeCC
Q 007306 467 ----------QIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 467 ----------~~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~---~~l~sg~~dg~i~iwd~~ 528 (608)
+++|++ +.|+.|++||++++. ....+. +|...|.+++|+|++ .+|++|+.|++|+|||+.
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 468888 589999999998765 444554 479999999999995 899999999999999998
Q ss_pred CCce--eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 007306 529 TLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWG 588 (608)
Q Consensus 529 ~~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~ 588 (608)
++.. ...... ..+| ...++ +++|+| ++++||+++.||.|+||+.... ..|.
T Consensus 238 ~~~~~~~~~~~~----~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~~-g~w~ 290 (297)
T 2pm7_B 238 NEQGPWKKTLLK----EEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLE-GKWE 290 (297)
T ss_dssp STTSCCEEEESS----SSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECTT-SCEE
T ss_pred CCCCccceeeee----cccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECCC-CcEE
Confidence 7532 111110 0133 33344 999999 7999999999999999998643 3444
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-34 Score=297.43 Aligned_cols=293 Identities=12% Similarity=0.070 Sum_probs=229.0
Q ss_pred CceeEeecC-CCCeEEEeecCCeEEEeeccC---CCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEe
Q 007306 212 QSRESTSLP-DADSAVCAKSLEKSVNLKLQL---INEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK 287 (608)
Q Consensus 212 ~~~~~~~s~-dg~~l~~~~~d~~i~iWd~~~---~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~ 287 (608)
....+.|+| ++++|++|+.||+|++||+.. .........+ +|...|++++|+|++++|++|+.||.|++||
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd 139 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-----DCSSTVTQITMIPNFDAFAVSSKDGQIIVLK 139 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-----ECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-----cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 334568999 999999999999999999874 2111111211 2899999999999999999999999999999
Q ss_pred cC---CCcceeeecccceeeEEeeCCCCeeeecc-cc-CCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCceee
Q 007306 288 WQ---SNKQSLEEENVNMESQLYQPSSKLVMTND-IA-ADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLA 357 (608)
Q Consensus 288 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~v~~v~~s----~~~l~s~~-d~~i~vwd~~~~~~~~ 357 (608)
+. +++.... .. +..+... +. .++...+.++.+. +.++++++ |+.|++||+.+++.+.
T Consensus 140 ~~~~~~~~~~~~----------~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 140 VNHYQQESEVKF----------LN---CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEEEEETTEEEE----------EE---EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred eccccCCceeec----------cc---cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 84 3332111 00 0011111 10 0266778888855 77899999 9999999999999999
Q ss_pred EecC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee-CccccEEEEEEeC----CCCEEEEEcCCCcEE
Q 007306 358 TFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK-GHQNRITCLAYSL----SLNVLVSSGADAQLC 429 (608)
Q Consensus 358 ~~~~--~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~l~s~~~d~~i~ 429 (608)
.+.. |...|++++|+|++ .|++|+.||.|++||+++++.+..+. .|...|.+++|+| ++.+|++++.||.|+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 9988 88999999999999 99999999999999999999998886 6888999996664 677999999999999
Q ss_pred EEECCCCceeccccee-------e-----------eecc--CCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCce
Q 007306 430 VWDAVGWKKLCSKFLH-------S-----------FQTG--LVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNH 488 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~-------~-----------~~~~--~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~ 488 (608)
+||+++++......-. . ...+ |. ..|++++|+ ++++|+++ .|+.|++||+.+++.
T Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~ 362 (437)
T 3gre_A 287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSL---NALSTISVS-NDKILLTDEATSSIVMFSLNELSS 362 (437)
T ss_dssp EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSG---GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccC---CceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence 9999986532211100 0 0011 44 679999999 77888885 899999999999988
Q ss_pred eeeecCC-----------------------------------CCCCCeEEEEEecC--CCEEEEEEcCCeEEEEe
Q 007306 489 TSQLVPD-----------------------------------KMDLPITYATYSCD--GKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 489 ~~~~~~~-----------------------------------~~~~~v~~~~~s~~--~~~l~sg~~dg~i~iwd 526 (608)
...+..+ .|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7776542 17899999999998 88999999999999995
No 89
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=6.9e-34 Score=284.08 Aligned_cols=279 Identities=13% Similarity=0.118 Sum_probs=229.8
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
+|.+.|++++|+|+|++|++++.||.|++|++.++..... .... . +|...|.+++|+ +
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~-~--~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-----------------LLQS-L--RYKHPLLCCNFIDNT 68 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-----------------EEEE-E--ECSSCEEEEEEEESS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-----------------ceee-e--ecCCceEEEEECCCC
Confidence 5999999999999999999999999999999876652000 1111 1 488999999999 8
Q ss_pred C-EEEEEe-CCcEEEEEc-CCCceeeEecC--CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------CceEEE
Q 007306 335 S-HLFSAS-GGKISIFSL-ETFQTLATFAN--PPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAK 399 (608)
Q Consensus 335 ~-~l~s~~-d~~i~vwd~-~~~~~~~~~~~--~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~---------~~~~~~ 399 (608)
+ +|++++ ||.|++||+ .+++. ..+.+ |...|.+++|+| + .+++++.|+.|++||+++ ++++..
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 8 899999 999999999 87755 67778 999999999999 8 999999999999999987 776766
Q ss_pred eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC-CceecccceeeeeccCCCCccceEEEEEcC-CCCEEEE-EeCC
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-IHEG 476 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~-~~d~ 476 (608)
+. |...|.+++|+|++ +++++.|+.|++||+++ +.. ........|. ..+.+++|+| +++++++ +.|+
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLK---YQIRDVALLPKEQEGYACSSIDG 216 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC----CCEEEECSCS---SCEEEEEECSGGGCEEEEEETTS
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc----cceeeecCCC---CceeEEEECCCCCCEEEEEecCC
Confidence 76 88999999999987 89999999999999987 432 1121233444 6899999999 9999998 5899
Q ss_pred cEEEEECCCC------ceeeeecCCC-------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeecc
Q 007306 477 QIDVYEAPTL------NHTSQLVPDK-------MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 543 (608)
Q Consensus 477 ~i~iwd~~~~------~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 543 (608)
.|++|+++.. +....+..+. |...|.+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------ 290 (342)
T 1yfq_A 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------ 290 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------
T ss_pred cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh------
Confidence 9999999876 6666665431 23499999999999999999999999999999999877765
Q ss_pred CCCcccccccEEEEEecCCCCEEEEEeCCCc-EEEEe
Q 007306 544 PGTISLELYPLVIAAHPLEPNRIALGLTNGR-VHVIE 579 (608)
Q Consensus 544 ~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~-v~iW~ 579 (608)
+|+...+. +++ | ++.+|++++.||. .+.|.
T Consensus 291 -~~h~~~v~--~~~--~-~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 291 -KFNEDSVV--KIA--C-SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -CCSSSEEE--EEE--E-CSSEEEEEEECTHHHHCSS
T ss_pred -cccCCCce--Eec--C-CCCeEEEEecCCccccccc
Confidence 44244444 777 8 7999999999998 54444
No 90
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=9.6e-34 Score=293.07 Aligned_cols=277 Identities=15% Similarity=0.187 Sum_probs=226.2
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHL 337 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l 337 (608)
|...|.+++| +|+++++|+.||.|++||..+++. ..... +|...|.+++|.+++|
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~---------------------~~~~~--~h~~~v~~l~~~~~~l 186 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLEC---------------------KRILT--GHTGSVLCLQYDERVI 186 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCE---------------------EEEEC--CCSSCEEEEECCSSEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeE---------------------EEEEc--CCCCcEEEEEECCCEE
Confidence 7788998877 899999999999999998876654 11111 6999999999998899
Q ss_pred EEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceE---EEeeCccccEEEEEEe
Q 007306 338 FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK---AKLKGHQNRITCLAYS 413 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~ 413 (608)
++|+ ||+|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.++... ..+.+|...|.+++|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999 999999999999999999999999999999643 9999999999999999988655 677889999999999
Q ss_pred CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeee
Q 007306 414 LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 414 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~ 492 (608)
+++++++|+.||.|++||+++++ .+. ...+|. ..|.++.++ +.++++ +.|+.|++||+++++++..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~-----~~~-~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCE-----FVR-TLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCC-----EEE-EEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCc-----EEE-EEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 67899999999999999999843 344 345666 689999984 678888 58999999999999999888
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc---------eeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE---------LRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
.. |...|.+++| ++.+|++|+.||.|++||+.+++ .+..+. +| ...+. +++| ++
T Consensus 333 ~~--h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------~h-~~~v~--~l~~---~~ 395 (435)
T 1p22_A 333 EG--HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------EH-SGRVF--RLQF---DE 395 (435)
T ss_dssp CC--CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-------CC-SSCCC--CEEE---CS
T ss_pred eC--CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc-------CC-CCCeE--EEEe---CC
Confidence 64 6899999998 78999999999999999997765 455544 44 44455 8888 46
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 564 NRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
.+|++|+.||.|++||+.++.......
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~ 422 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLNDPAAQAEP 422 (435)
T ss_dssp SCEEECCSSSEEEEEC-----------
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccCC
Confidence 789999999999999998876654433
No 91
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.1e-32 Score=286.19 Aligned_cols=279 Identities=19% Similarity=0.213 Sum_probs=234.7
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCE
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSH 336 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 336 (608)
+|.+.|.. +++++|++|++|+.||+|++||+.+++. ..... +|...|.+++|++++
T Consensus 116 ~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~---------------------~~~~~--~h~~~v~~~~~~~~~ 171 (445)
T 2ovr_B 116 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC---------------------LRTLV--GHTGGVWSSQMRDNI 171 (445)
T ss_dssp CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE---------------------EEECC--CCSSCEEEEEEETTE
T ss_pred ccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE---------------------EEEEc--CCCCCEEEEEecCCE
Confidence 38887543 3666799999999999999998876654 11111 699999999999889
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 415 (608)
+++++ ||+|++||+.+++.+..+.+|...|.+++|+++ .+++|+.||.|++||+.+++.+..+.+|...|.++.| +
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D 248 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C
T ss_pred EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C
Confidence 99999 999999999999999999999999999999533 8999999999999999999999999999999999999 7
Q ss_pred CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecC
Q 007306 416 LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVP 494 (608)
Q Consensus 416 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~ 494 (608)
++++++++.||.|++||+++++ .+. ...+|. ..|.+++| ++.++++ +.|+.|++||+++++++..+..
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~-----~~~-~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETET-----CLH-TLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGTE-----EEE-EECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCc-----EeE-EecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence 8899999999999999998843 344 345666 68999999 7888888 5899999999999999888864
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCc
Q 007306 495 DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGR 574 (608)
Q Consensus 495 ~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~ 574 (608)
|...+.++.+ +++++++|+.||.|++||+.+++.+..+..+ .+| ... +.+++|++ ++|++|+.||.
T Consensus 318 --~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~-~~~--v~~~~~~~---~~l~s~~~dg~ 383 (445)
T 2ovr_B 318 --HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP----NKH-QSA--VTCLQFNK---NFVITSSDDGT 383 (445)
T ss_dssp --CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST----TSC-SSC--EEEEEECS---SEEEEEETTSE
T ss_pred --CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC----CCC-CCC--EEEEEECC---CEEEEEeCCCe
Confidence 5788887776 4679999999999999999999988877532 012 333 45888854 79999999999
Q ss_pred EEEEeCCCCcccc
Q 007306 575 VHVIEPLESEVEW 587 (608)
Q Consensus 575 v~iW~~~~~~~~~ 587 (608)
|++||+.+++...
T Consensus 384 v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 384 VKLWDLKTGEFIR 396 (445)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEEECCCCceee
Confidence 9999999987643
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.1e-34 Score=283.20 Aligned_cols=249 Identities=11% Similarity=0.115 Sum_probs=200.4
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc--eeeEecCCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~d~~i~vwd~~~ 393 (608)
+|...|++++|+ +++|++|+ |++|++||+.++. .+..+.+|...|.+++|+| ++ .|++|+.|++|++||+++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 699999999999 89999999 9999999998775 4678889999999999986 37 999999999999999998
Q ss_pred C--ceEEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC---
Q 007306 394 K--KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--- 466 (608)
Q Consensus 394 ~--~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--- 466 (608)
+ .....+.+|...|.+++|+|+ +.+|++++.|++|++||++.... ........+|. ..|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHT---IGCNAVSWAPAVVP 164 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSS---SCBCCCEECCCCCC
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeecccc---CCcceEEEccccCC
Confidence 7 456678889999999999997 78999999999999999987421 11122445676 68999999998
Q ss_pred --------------CCEEEE-EeCCcEEEEECCCC---ceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEE
Q 007306 467 --------------QIHLLS-IHEGQIDVYEAPTL---NHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKV 524 (608)
Q Consensus 467 --------------~~~l~~-~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~sg~~dg~i~i 524 (608)
+++|++ +.|+.|++||+++. +++..+. .|...|.+++|+|++ .+|++|+.|++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~--~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE--AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB--CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc--cCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 367887 58999999999755 3455554 478999999999987 89999999999999
Q ss_pred EeCCCCc---e-eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 525 FDTSTLE---L-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 525 wd~~~~~---~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
|++.+.. . ...+. +| ...++ +++|+| ++.+||+++.||+|+||+.... ..|...
T Consensus 243 w~~~~~~~~~~~~~~~~-------~~-~~~v~--~v~~sp-~g~~las~~~D~~v~lw~~~~~-g~~~~~ 300 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLH-------KF-NDVVW--HVSWSI-TANILAVSGGDNKVTLWKESVD-GQWVCI 300 (316)
T ss_dssp EECSSTTCCCCBCCEEE-------EC-SSCEE--EEEECT-TTCCEEEEESSSCEEEEEECTT-SCEEEE
T ss_pred EEccCccccchhhhhhh-------cC-CCcEE--EEEEcC-CCCEEEEEcCCCeEEEEEECCC-CcEEEe
Confidence 9998632 1 11221 23 33455 999999 7999999999999999998643 345443
No 93
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-34 Score=290.60 Aligned_cols=292 Identities=11% Similarity=0.061 Sum_probs=220.4
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
++|||||+++|+++.|++|+ |... ..+ + .+|...|++++|+|+| .++.+.+|+.+...
T Consensus 21 v~~SpDG~~iASas~D~TV~--d~~~----~~~----l--~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--- 78 (588)
T 2j04_A 21 LTWARDGTLYLTTFPDISIG--QPKY----AKD----I--NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--- 78 (588)
T ss_dssp EEECTTSCEEEECSSSEEEE--EECC----CSC----C--SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred EEECCCCCEEEEEcCCceee--cccc----cce----e--cCCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence 37999999999999999999 6442 222 2 3599999999999999 45554444322111
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCC-----CeE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPP-----IAT 367 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~-----~v~ 367 (608)
... . .|...|.+++|+ |.+||+++ ||+|++||.+. ++..+. |.. .+.
T Consensus 79 ------------------~~~--~--~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~ 133 (588)
T 2j04_A 79 ------------------LLN--S--QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYH 133 (588)
T ss_dssp ------------------SST--T--SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEE
T ss_pred ------------------Eee--c--CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEE
Confidence 111 1 368899999999 89999999 99999999654 666666 655 599
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCce-------EEEe----eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC
Q 007306 368 YFILLPQD-LFAFGFDDSSILVHCPCTKKT-------KAKL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG 435 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 435 (608)
+++|+||| .|++|+.||+|++||+.++.. +..+ .+|...|.+++|+|+| +++++.|++|++||+.+
T Consensus 134 svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 134 CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC
Confidence 99999999 999999999999999998853 5666 5678899999999999 88889999999999987
Q ss_pred CceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEE--ecCCCEE
Q 007306 436 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY--SCDGKCI 513 (608)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l 513 (608)
+... ...+++..+|. ..|.+++|+ |..++++.++.|++||+.+++...... +|...+..++| +||+..|
T Consensus 212 ~~~~--~~~~tL~~~h~---~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~L 282 (588)
T 2j04_A 212 SSHQ--PVSRMIQNASR---RKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTIL 282 (588)
T ss_dssp SSSC--CCEEEEECCCS---SCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEE
T ss_pred Cccc--cceeeeccccc---CcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEE
Confidence 4311 11222334666 689999999 688888778999999998777633222 47999999999 9999999
Q ss_pred EEEEcCCeEEEEeCCCCceeEEEecee------------eccCCC----cccccccEEEEEecCCCCEEEEEeC
Q 007306 514 YVSCKSGHVKVFDTSTLELRCQINLTA------------YAQPGT----ISLELYPLVIAAHPLEPNRIALGLT 571 (608)
Q Consensus 514 ~sg~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~g~----~~~~v~~~~v~~sp~d~~~las~s~ 571 (608)
+++++||+ ++|.... .. +.+.. +...|. -.+...+.+++|+| ||..+|+++.
T Consensus 283 a~a~edG~-klw~~d~---~~-~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 283 LMSNKTSY-KVLLEDE---LH-VTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp EECSSCEE-EEEESSS---EE-EECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECT-TSSEEEEEEE
T ss_pred EEEcCCCC-EEEeecc---EE-ECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECC-CCCEEEEEEe
Confidence 99999999 9999862 11 11110 000010 01122245999999 8999999873
No 94
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.2e-34 Score=281.54 Aligned_cols=244 Identities=15% Similarity=0.178 Sum_probs=198.4
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
+|.+.|++++|+|+|++||+|+.|++|+|||+.++... .+.. + .+|...|.+++|+
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-------------------~~~~-l-~gH~~~V~~v~~~~~~ 69 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-------------------LIAD-L-RGHEGPVWQVAWAHPM 69 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-------------------EEEE-E-ECCSSCEEEEEECCGG
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-------------------EEEE-E-cCCCccEEEEEeCCCC
Confidence 49999999999999999999999999999998665320 0111 1 1699999999996
Q ss_pred -CCEEEEEe-CCcEEEEEcCCC--ceeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCce---EEEeeCc
Q 007306 334 -GSHLFSAS-GGKISIFSLETF--QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKT---KAKLKGH 403 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~~~~---~~~~~~~ 403 (608)
+++|++|+ |++|++||+.++ +....+.+|...|.+++|+|+ + .|++|+.|+.|++||++++.. ...+.+|
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h 149 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence 67999999 999999999987 456678899999999999998 7 999999999999999987632 3456679
Q ss_pred cccEEEEEEeCC-----------------CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC
Q 007306 404 QNRITCLAYSLS-----------------LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 466 (608)
Q Consensus 404 ~~~v~~~~~~~~-----------------~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 466 (608)
...|.+++|+|+ +++|++|+.|++|++||++.... ...+. .+.+|. ..|.+++|+|+
T Consensus 150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~--~~~~~-~l~~h~---~~V~~v~~sp~ 223 (316)
T 3bg1_A 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ--WKEEQ-KLEAHS---DWVRDVAWAPS 223 (316)
T ss_dssp SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC--EEEEE-CCBCCS---SCEEEEECCCC
T ss_pred cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc--cceee-ecccCC---CceEEEEecCC
Confidence 999999999997 46899999999999999975321 12233 456787 79999999998
Q ss_pred C----CEEEE-EeCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 467 Q----IHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 467 ~----~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
+ .+|++ +.|++|++||+.+.. ....+. .|...|.+++|+|++++|++++.||.|++|+...
T Consensus 224 ~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 224 IGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 6 78888 589999999987631 112222 3688999999999999999999999999999763
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.9e-33 Score=285.80 Aligned_cols=269 Identities=17% Similarity=0.258 Sum_probs=221.5
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
.+.+|++++++|+.||+|++||..+ +++... +. +|.+.|.+++| ++++|++|+.||+|++||+.+++.
T Consensus 138 ~~~~d~~~l~~g~~dg~i~iwd~~~----~~~~~~-~~--~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~--- 205 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDNTIKIWDKNT----LECKRI-LT--GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM--- 205 (435)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSS----CCEEEE-EC--CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE---
T ss_pred EEEECCCEEEEEeCCCeEEEEeCCC----CeEEEE-Ec--CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE---
Confidence 5777999999999999999999974 444432 43 49999999999 789999999999999998877654
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCcee---eEecCCCCCeEEEEEc
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTL---ATFANPPPIATYFILL 372 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~---~~~~~~~~~v~~~~~~ 372 (608)
..... +|...|.+++|+++.+++|+ ||.|++||+.++... ..+.+|...|.+++|
T Consensus 206 ------------------~~~~~--~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 206 ------------------LNTLI--HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ------------------EEEEC--CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred ------------------EEEEc--CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 11111 58999999999978999999 999999999987765 677799999999999
Q ss_pred CCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccC
Q 007306 373 PQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 373 ~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
++ .+++|+.||.|++||+++++.+..+.+|...|.++.++ ++++++|+.||.|++||+++++ .+. ...+|
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~-----~~~-~~~~h 335 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA-----CLR-VLEGH 335 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCC-----EEE-EECCC
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCC-----EEE-EEeCC
Confidence 66 99999999999999999999999999999999999995 6899999999999999999843 444 45567
Q ss_pred CCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc---------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 007306 452 VPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN---------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 521 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~ 521 (608)
. ..|.+++| ++.++++ +.||.|++||+.++. ++..+. .|...|.+++| ++.+|++|+.||.
T Consensus 336 ~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 336 E---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp S---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred c---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEEEe--CCCEEEEEeCCCE
Confidence 6 68999998 6788888 589999999987665 666665 46899999999 7889999999999
Q ss_pred EEEEeCCCCceeEEE
Q 007306 522 VKVFDTSTLELRCQI 536 (608)
Q Consensus 522 i~iwd~~~~~~~~~~ 536 (608)
|++||+.+.......
T Consensus 407 i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 407 ILIWDFLNDPAAQAE 421 (435)
T ss_dssp EEEEC----------
T ss_pred EEEEECCCCCCcccC
Confidence 999999887654443
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.1e-33 Score=286.12 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=230.2
Q ss_pred eecCCCCeEE-EeecCCeEEEeeccCCCCC-CceeeEeecCCCCCCcEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcc
Q 007306 217 TSLPDADSAV-CAKSLEKSVNLKLQLINEP-SECRTLLLPDNSFGGRVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 217 ~~s~dg~~l~-~~~~d~~i~iWd~~~~~~~-~~~~~~~l~~~~h~~~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.++|+...++ +++.||.|++|++...... ..... + .+|.+.|++++|+| ++++|++|+.||.|++|++.++..
T Consensus 41 ~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~--~--~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 41 AVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPL--V--CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp EECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCC--B--CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred EECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCce--E--ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 5777776554 5789999999998642111 11221 3 35999999999999 999999999999999999987643
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C-CEEEEEe-CCcEEEEEcCCCceeeEe--cCCCCCeE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G-SHLFSAS-GGKISIFSLETFQTLATF--ANPPPIAT 367 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~-~~l~s~~-d~~i~vwd~~~~~~~~~~--~~~~~~v~ 367 (608)
.. ... ..... ..+|...|.+++|+ + ++|++++ |+.|++||+.+++.+..+ ..|...|.
T Consensus 117 ~~------------~~~--~~~~~--~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 180 (402)
T 2aq5_A 117 VL------------PLR--EPVIT--LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180 (402)
T ss_dssp SS------------CBC--SCSEE--EECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE
T ss_pred cc------------ccC--CceEE--ecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE
Confidence 10 000 00110 01699999999999 4 6999999 999999999999999999 78999999
Q ss_pred EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe-eCcccc-EEEEEEeCCCCEEEEE---cCCCcEEEEECCCCceecc
Q 007306 368 YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL-KGHQNR-ITCLAYSLSLNVLVSS---GADAQLCVWDAVGWKKLCS 441 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~s~---~~d~~i~vwd~~~~~~~~~ 441 (608)
+++|+|++ .|++++.|+.|++||+++++.+..+ .+|.+. +.++.|+|+++++++| +.|+.|++||+++.+.
T Consensus 181 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--- 257 (402)
T 2aq5_A 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--- 257 (402)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS---
T ss_pred EEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC---
Confidence 99999999 9999999999999999999999888 678765 8999999999999999 7999999999987542
Q ss_pred cceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCce-eeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 442 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
++......+. ..+.+++|+|+++++++ + .|+.|++||+.+++. +..+....|...+.+++|+|++.++++ .
T Consensus 258 -~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 258 -PLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp -CSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred -CceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 2221222344 57999999999999976 6 699999999998874 444444345789999999999998875 5
Q ss_pred CCeEEEEeCCCCcee
Q 007306 519 SGHVKVFDTSTLELR 533 (608)
Q Consensus 519 dg~i~iwd~~~~~~~ 533 (608)
++.+++|++.++...
T Consensus 332 ~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 332 CEIARFYKLHERKCE 346 (402)
T ss_dssp TEEEEEEEEETTEEE
T ss_pred ceeEEEEEcCCCcEE
Confidence 679999999987643
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=286.04 Aligned_cols=304 Identities=11% Similarity=0.076 Sum_probs=221.3
Q ss_pred ceeEeecCCCCeEEEeecCCeEEEeeccCCCC-----CCce-eeEeecCCCCC------------CcEEEEEEeeCC--C
Q 007306 213 SRESTSLPDADSAVCAKSLEKSVNLKLQLINE-----PSEC-RTLLLPDNSFG------------GRVVRLIYSHSG--D 272 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~-----~~~~-~~~~l~~~~h~------------~~V~~~~fsp~g--~ 272 (608)
...+.|+|+|++||+|+.||.|++||+..... .... ....+.+ |. +.|.+++|+|++ .
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS--HEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC--CCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc--ccccccccccccccCceEEEEEcCCCCcc
Confidence 34568999999999999999999999985321 0111 1223443 87 889999999998 8
Q ss_pred EEEEEeCCCcEEEEecCCCcceeeec---c-------------cc---eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe
Q 007306 273 FLVALTQTATHKLWKWQSNKQSLEEE---N-------------VN---MESQLYQPSSKLVMTNDIAADPKDSISCFALR 333 (608)
Q Consensus 273 ~l~s~s~dg~i~iw~~~~~~~~~~~~---~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 333 (608)
+|++++.||+|++|++.++....... . .. ..+.-+.... .... .+..+|...|.+++|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA-SPRR-IFANAHTYHINSISIN 186 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE-EEEE-EECSCCSSCCCEEEEC
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec-cceE-EeccCCCcceEEEEEc
Confidence 99999999999999987644311100 0 00 0000000000 0011 1122699999999999
Q ss_pred --CCEEEEEeCCcEEEEEcCC-Cceee-------EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCce----E
Q 007306 334 --GSHLFSASGGKISIFSLET-FQTLA-------TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKT----K 397 (608)
Q Consensus 334 --~~~l~s~~d~~i~vwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~----~ 397 (608)
+++|++|.|+.|++||+.+ ++.+. .+.+|...|.+++|+|++ .|++|+.||.|++||+++++. +
T Consensus 187 ~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 187 SDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp TTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 8889988799999999984 44444 256899999999999997 899999999999999999886 7
Q ss_pred EEeeCccc------------cEEEEEEeCCCCEEEEEcCCCcEEEEECCC-CceecccceeeeeccCCCCcc--------
Q 007306 398 AKLKGHQN------------RITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETT-------- 456 (608)
Q Consensus 398 ~~~~~~~~------------~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~-------- 456 (608)
..+.+|.. .|.+++|+|+|++|++++. +.|++||+++ ++ ++. ...+|.....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~-----~~~-~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR-----PVE-TYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS-----CSC-CEESCGGGTTTHHHHHHT
T ss_pred eEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc-----ccc-eeeccccccccccccccc
Confidence 88888876 8999999999999999998 9999999986 32 233 2333431000
Q ss_pred ----ceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeec------------------------------CCCCCCCe
Q 007306 457 ----IVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV------------------------------PDKMDLPI 501 (608)
Q Consensus 457 ----~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~------------------------------~~~~~~~v 501 (608)
.+..++|+|++++|+++ .|+.|++||+.+++.+.... ...+...|
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 419 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKI 419 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCce
Confidence 13349999999999985 89999999999887653110 00235678
Q ss_pred EEEEEecCCCEEEEEEcCCeEEEEeCC
Q 007306 502 TYATYSCDGKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 502 ~~~~~s~~~~~l~sg~~dg~i~iwd~~ 528 (608)
..++|+|++++|++++.++ +++|..+
T Consensus 420 ~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 420 LHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred eEEEECCCCCEEEEEecce-eeeeccc
Confidence 9999999999999998776 7788643
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=295.36 Aligned_cols=281 Identities=12% Similarity=0.052 Sum_probs=209.5
Q ss_pred ceeEeecCC------CCeEEEeecCCeEEEeeccCCCCCCc-e-----eeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC
Q 007306 213 SRESTSLPD------ADSAVCAKSLEKSVNLKLQLINEPSE-C-----RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT 280 (608)
Q Consensus 213 ~~~~~~s~d------g~~l~~~~~d~~i~iWd~~~~~~~~~-~-----~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d 280 (608)
...+.|+|+ +.+||+++.||+|++||+........ . ....+ .+|...|++++|+|++ .|++|+.|
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-EEEEEETT
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-eEEEEeCC
Confidence 344678886 67999999999999999975321100 0 01124 3489999999999865 79999999
Q ss_pred CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEE--EEe--C-CEEEEEe-CCcEEEEEcCCCc
Q 007306 281 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCF--ALR--G-SHLFSAS-GGKISIFSLETFQ 354 (608)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~s--~-~~l~s~~-d~~i~vwd~~~~~ 354 (608)
|+|++||+.++.... .... +|...|.++ +|+ + .+|++|+ |++|++||+.+++
T Consensus 287 gtV~lWD~~~~~~~~-----------------~~~~-----~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 287 GFVAEFDLTDPEVPS-----------------FYDQ-----VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp SEEEEEETTBCSSCS-----------------EEEE-----CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred CEEEEEECCCCCCce-----------------EEee-----cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 999999987553200 0011 699999999 456 5 7899999 9999999999988
Q ss_pred eeeEecCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEE
Q 007306 355 TLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 431 (608)
Q Consensus 355 ~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vw 431 (608)
+...+.+|.. .|.+++|+|++ .+++++.|++|++||++++.++..+.+|.+.|++++|+|+|++|++|+.||+|++|
T Consensus 345 ~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lw 424 (524)
T 2j04_B 345 TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIIT 424 (524)
T ss_dssp HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECC
T ss_pred cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEE
Confidence 8777776653 57899999999 99999999999999999999888899999999999999999999999999999999
Q ss_pred ECCCCceecccceeeeec---cCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECC-CCceeeeecCCCCCCCeEEEEEe
Q 007306 432 DAVGWKKLCSKFLHSFQT---GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP-TLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 432 d~~~~~~~~~~~~~~~~~---~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
|+... .+..... .+.. ..+.+++|+|++..+.. ++.+.+|+.. ++.++..+. +|...|.+++|+
T Consensus 425 d~~~~------~~~~~~~~~~~~~~--~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~--gh~~~V~~Vafs 492 (524)
T 2j04_B 425 NAARR------LLHGIKNSSATQKS--LRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKID--AHGINITCTKWN 492 (524)
T ss_dssp BSCSS------TTTCC------CCC--CEEEECBCCSSSCEEEE--CCCCCCCC---------------CCCSCCCEEEC
T ss_pred echHh------hccccccCccceee--eEEEEeccCCCCCeEEc--cCCceecccccCCcceeeec--CCCceEEEEECC
Confidence 98652 2221110 1110 24779999999985533 2233344332 466666665 468999999999
Q ss_pred cCCC---EEEEEEcCCeEEEEeCCCC
Q 007306 508 CDGK---CIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 508 ~~~~---~l~sg~~dg~i~iwd~~~~ 530 (608)
|++. ++++|+.||.|+||++.-.
T Consensus 493 p~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 493 ETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCCccHHHHhhccCceEEEEEcccc
Confidence 9964 9999999999999998643
No 99
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5e-32 Score=270.54 Aligned_cols=277 Identities=11% Similarity=0.024 Sum_probs=224.5
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCC-EEEEEeCCCcEEEEec-CCC
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGD-FLVALTQTATHKLWKW-QSN 291 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~-~~~ 291 (608)
..+.|+|++++|++++.||.|++|++........... +. +|...|.+++|+|+++ +|++|+.||.|++|++ .++
T Consensus 15 ~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ--SL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEE--EE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccccee--ee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 3458999999999999999999999985321111333 22 3899999999999999 9999999999999987 655
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCC--CCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCC---------CceeeE
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAAD--PKDSISCFALR-GSHLFSAS-GGKISIFSLET---------FQTLAT 358 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~---------~~~~~~ 358 (608)
.. ... .+ |...|.+++|+ ++++++++ |+.|++||+.+ ++++..
T Consensus 91 ~~---------------------~~~---~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 91 SF---------------------QAL---TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp SE---------------------EEC---BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred ce---------------------Eec---cccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence 42 110 15 99999999999 99999999 99999999988 777777
Q ss_pred ecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-Cc--eEEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECC
Q 007306 359 FANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KK--TKAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAV 434 (608)
Q Consensus 359 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~ 434 (608)
+. |...|.+++|+|++ +++++.|+.|++||+++ +. .......|...|.+++|+| +++++++++.||.|++||++
T Consensus 147 ~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp SS-SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred Ee-eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 76 88999999999987 99999999999999998 54 3334456888999999999 99999999999999999998
Q ss_pred CC--ceecccceeeeeccCCC------CccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCC-CCCeEEE
Q 007306 435 GW--KKLCSKFLHSFQTGLVP------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM-DLPITYA 504 (608)
Q Consensus 435 ~~--~~~~~~~~~~~~~~~~~------~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~ 504 (608)
.. ... ..... ....|.. +...|.+++|+|++++|++ +.||.|++||+.+++.+..+.. | ...|.++
T Consensus 225 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~~ 300 (342)
T 1yfq_A 225 DQGDDYN-SSKRF-AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK--FNEDSVVKI 300 (342)
T ss_dssp TTCCSTT-CTTCE-EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--CSSSEEEEE
T ss_pred CCCcccc-cccce-eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc--ccCCCceEe
Confidence 74 100 02222 2334420 0148999999999999998 5899999999999999888764 4 8899999
Q ss_pred EEecCCCEEEEEEcCCe-EEEEe
Q 007306 505 TYSCDGKCIYVSCKSGH-VKVFD 526 (608)
Q Consensus 505 ~~s~~~~~l~sg~~dg~-i~iwd 526 (608)
+ |++++|++|+.||. .+.|.
T Consensus 301 ~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 301 A--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp E--ECSSEEEEEEECTHHHHCSS
T ss_pred c--CCCCeEEEEecCCccccccc
Confidence 9 99999999999998 55554
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=275.05 Aligned_cols=249 Identities=14% Similarity=0.171 Sum_probs=208.3
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--- 333 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--- 333 (608)
+|.+.|++++|+|+|++|++|+.||.|+||++..... ...... .+|...|.+++|+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------~~~~~~--~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHPK 67 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------EEEEEE--CCCSSCEEEEEECCGG
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------eeeeEe--cCCCCcEEEEEeCCCC
Confidence 3999999999999999999999999999999864322 111111 1699999999997
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCc--eeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCc--eEEEeeCcc
Q 007306 334 -GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGHQ 404 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~ 404 (608)
+++|++++ ||.|++||+.+++ .+..+..|...|.+++|+|+ + .+++++.|+.|++||+.++. ....+.+|.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 68999999 9999999999987 77788889999999999999 8 99999999999999999873 345667899
Q ss_pred ccEEEEEEeC-------------CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC---CC
Q 007306 405 NRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QI 468 (608)
Q Consensus 405 ~~v~~~~~~~-------------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---~~ 468 (608)
..|.+++|+| ++.++++++.|+.|++||++++.... .... ...+|. ..|.+++|+|+ ++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~-~~~~h~---~~v~~~~~sp~~~~~~ 222 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLRS 222 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSSE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-eeEE-EEeccc---CcEeEEEECCCCCCCC
Confidence 9999999999 69999999999999999998754221 1222 455676 78999999999 88
Q ss_pred EEEE-EeCCcEEEEECCCCc---eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 469 HLLS-IHEGQIDVYEAPTLN---HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 469 ~l~~-~~d~~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
+|++ +.|+.|++||+.++. ....+....|...|.+++|+|+|++|++++.||.|++|++..+.
T Consensus 223 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 223 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 9998 589999999998864 22333333468899999999999999999999999999998544
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-32 Score=281.33 Aligned_cols=287 Identities=11% Similarity=0.047 Sum_probs=228.4
Q ss_pred cEEEEEEeeCCCEEE-EEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---CCE
Q 007306 261 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---GSH 336 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~~~ 336 (608)
....++++|+...++ +++.||.|+||++...... . . ... ...+|...|.+++|+ +++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------------~-~---~~~--~~~~h~~~V~~~~~~p~~~~~ 96 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------------D-K---NVP--LVCGHTAPVLDIAWCPHNDNV 96 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------------C-T---TCC--CBCCCSSCEEEEEECTTCTTE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------------C-C---CCc--eEecCCCCEEEEEeCCCCCCE
Confidence 344678888876444 5788999999998654320 0 0 000 111699999999998 679
Q ss_pred EEEEe-CCcEEEEEcCCC-------ceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEe--eCcc
Q 007306 337 LFSAS-GGKISIFSLETF-------QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKL--KGHQ 404 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~ 404 (608)
|++|+ ||.|++||+.++ +.+..+.+|...|.+++|+|++ .|++|+.|+.|++||+.+++.+..+ .+|.
T Consensus 97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 176 (402)
T 2aq5_A 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176 (402)
T ss_dssp EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCC
T ss_pred EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCC
Confidence 99999 999999999987 6788889999999999999997 8999999999999999999999999 7899
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE----eCCcEEE
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----HEGQIDV 480 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~----~d~~i~i 480 (608)
..|.+++|+|++++|++++.||.|++||+++++ .+..+..+|.. ..+.+++|+|++++++++ .|+.|++
T Consensus 177 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i 249 (402)
T 2aq5_A 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-----VVAEKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL 249 (402)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----EEEEEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred CceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----eeeeeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence 999999999999999999999999999999843 34423245652 348899999999999987 6899999
Q ss_pred EECCCCce-eeeecCCCCCCCeEEEEEecCCCEEEE-EEcCCeEEEEeCCCCce-eEEEeceeeccCCCcccccccEEEE
Q 007306 481 YEAPTLNH-TSQLVPDKMDLPITYATYSCDGKCIYV-SCKSGHVKVFDTSTLEL-RCQINLTAYAQPGTISLELYPLVIA 557 (608)
Q Consensus 481 wd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s-g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~g~~~~~v~~~~v~ 557 (608)
||+++++. +..... .+...+.+++|+|++++|++ |+.||.|++||+.+++. +..+..+ .| ...+. +++
T Consensus 250 wd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~-----~~-~~~v~--~~~ 320 (402)
T 2aq5_A 250 WDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF-----SS-KESQR--GMG 320 (402)
T ss_dssp EETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-----CC-SSCCS--EEE
T ss_pred EcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-----cc-CCccc--ceE
Confidence 99988765 333332 35788999999999999975 55799999999999884 4444322 11 33444 999
Q ss_pred EecCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 558 AHPLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 558 ~sp~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
|+| ++.++++ .|+.+++|++.+++.
T Consensus 321 ~sp-~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 321 YMP-KRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ECC-GGGSCGG--GTEEEEEEEEETTEE
T ss_pred Eec-cccccee--cceeEEEEEcCCCcE
Confidence 999 7877765 567999999988654
No 102
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=273.53 Aligned_cols=282 Identities=13% Similarity=0.103 Sum_probs=222.9
Q ss_pred CCCCCcEEEEEEeeC---CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE
Q 007306 256 NSFGGRVVRLIYSHS---GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 332 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~---g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 332 (608)
.+|.+.|++++|+|+ |++|++|+.||.|++|++.+.... .... +. +|...|.+++|
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------~~~~-~~-~h~~~v~~~~~ 94 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------IPKA-QQ-MHTGPVLDVCW 94 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------EEEE-EE-ECSSCEEEEEE
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------eEEE-ec-cccCCEEEEEE
Confidence 349999999999999 699999999999999998763220 0010 11 59999999999
Q ss_pred e--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEE--cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcccc
Q 007306 333 R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFIL--LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 333 s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
+ +++|++++ ||.|++||+.+++.+. +..|...|.+++| +|++ .|++++.||.|++||+++++.+..+..+. .
T Consensus 95 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~ 172 (368)
T 3mmy_A 95 SDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R 172 (368)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C
T ss_pred CcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C
Confidence 9 88999999 9999999999988776 5569999999999 8999 99999999999999999999998888664 5
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCE----EEE-EeCCcEEEE
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH----LLS-IHEGQIDVY 481 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~----l~~-~~d~~i~iw 481 (608)
+.++.+.+ ..+++++.++.+.+||++..... .......+. ..+.++.+.++... +++ +.|+.|++|
T Consensus 173 ~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 173 CYCADVIY--PMAVVATAERGLIVYQLENQPSE----FRRIESPLK---HQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp EEEEEEET--TEEEEEEGGGCEEEEECSSSCEE----EEECCCSCS---SCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred ceEEEecC--CeeEEEeCCCcEEEEEeccccch----hhhcccccc---CCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 66766664 57888999999999999874321 111111222 34566666655443 666 689999999
Q ss_pred ECCCC---ceeeeecCCCCCC------------CeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCC
Q 007306 482 EAPTL---NHTSQLVPDKMDL------------PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGT 546 (608)
Q Consensus 482 d~~~~---~~~~~~~~~~~~~------------~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~ 546 (608)
|++.. ..+..+.. |.. .|.+++|+|++++|++|+.||.|++||+.+++.+..+. +|
T Consensus 244 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~ 314 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE-------QL 314 (368)
T ss_dssp ESSCSCHHHHSEEEEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------CC
T ss_pred ecCCCCccccceeeee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec-------CC
Confidence 99877 44555543 333 79999999999999999999999999999999887775 33
Q ss_pred cccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 547 ISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 547 ~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
...+ .+++|+| ++.+|++++.|+..+.|++.+
T Consensus 315 -~~~v--~~~~~s~-~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 315 -DQPI--SACCFNH-NGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp -SSCE--EEEEECT-TSSCEEEEECCCSTTCGGGCC
T ss_pred -CCCc--eEEEECC-CCCeEEEEecccccccccccC
Confidence 3344 4999999 899999999998666666544
No 103
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.2e-31 Score=288.16 Aligned_cols=286 Identities=13% Similarity=0.127 Sum_probs=240.2
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCC----cceeeecccceeeEEeeCCCCeeeeccccCCCCCC-eEEEE
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSN----KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS-ISCFA 331 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~v~ 331 (608)
.|.+.|.+++|+|+|++|++++ ++.|.+|++.++ .. ...+ .+|... |.+++
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~---------------------~~~~--~~h~~~~v~~~~ 71 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPP---------------------VVQF--TGHGSSVVTTVK 71 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCS---------------------EEEE--CTTTTSCEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcccc---------------------ceEE--ecCCCceEEEEE
Confidence 4899999999999999999998 789999988755 22 1111 169999 99999
Q ss_pred Ee----CCEEEEEe-CCcEEEEEcCCC--------ceeeEecCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCC
Q 007306 332 LR----GSHLFSAS-GGKISIFSLETF--------QTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCT 393 (608)
Q Consensus 332 ~s----~~~l~s~~-d~~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d----~~i~vwd~~~ 393 (608)
|+ +++|++++ ||.|++||+.++ +....+..|...|.+++|+|++ .+++++.+ +.|++|| .
T Consensus 72 ~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~ 149 (615)
T 1pgu_A 72 FSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--S 149 (615)
T ss_dssp ECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--T
T ss_pred ECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--C
Confidence 98 47999999 999999999755 6777888999999999999999 99999987 6888888 5
Q ss_pred CceEEEeeCccccEEEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCcc---ceEEEEEcCC-CC
Q 007306 394 KKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT---IVNHIQFHPD-QI 468 (608)
Q Consensus 394 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~sp~-~~ 468 (608)
++.+..+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++ .+. ...+|. . .|.+++|+|+ ++
T Consensus 150 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~-----~~~-~~~~~~---~~~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 150 GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----FSA-SDRTHH---KQGSFVRDVEFSPDSGE 220 (615)
T ss_dssp CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE-----EEE-EECSSS---CTTCCEEEEEECSTTCC
T ss_pred CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc-----eee-eecccC---CCCceEEEEEECCCCCC
Confidence 778888999999999999999998 89999999999999998843 333 344565 5 8999999999 99
Q ss_pred EEEE-EeCCcEEEEECCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCC
Q 007306 469 HLLS-IHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 545 (608)
Q Consensus 469 ~l~~-~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g 545 (608)
++++ +.|+.|++||+.+++.+..+... .|...|.+++|+ ++++|++++.||.|++||+.+++.+..+..+.
T Consensus 221 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----- 294 (615)
T 1pgu_A 221 FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK----- 294 (615)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-----
T ss_pred EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-----
Confidence 9998 58999999999999988887321 368999999999 99999999999999999999999888776421
Q ss_pred CcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 546 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 546 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
......+.++.|+ ++.++++++.||.|++|++.+++..
T Consensus 295 -~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~ 332 (615)
T 1pgu_A 295 -QQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVL 332 (615)
T ss_dssp -TCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred -CcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEE
Confidence 0112234477775 5789999999999999999886654
No 104
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.4e-32 Score=269.07 Aligned_cols=254 Identities=13% Similarity=0.148 Sum_probs=210.5
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+.|++++|+|+|++|++|+.||.|++|++.++.... ...... .+|...|.+++|+
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~--~~~~~~v~~~~~~~~ 68 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-----------------ELSDSW--RAHDSSIVAIDWASP 68 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-----------------EEEEEE--ECCSSCEEEEEECCG
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-----------------eeccee--ccCCCcEEEEEEcCC
Confidence 3599999999999999999999999999999987654310 011111 1699999999998
Q ss_pred --CCEEEEEe-CCcEEEEEcCCC---------ceeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCceEE
Q 007306 334 --GSHLFSAS-GGKISIFSLETF---------QTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
+++|++++ ||.|++||+.++ +.+..+..|...|.+++|+|+ + .+++++.||.|++||+++++.+.
T Consensus 69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence 57999999 999999999887 567888899999999999999 8 99999999999999999886554
Q ss_pred Eee-------------CccccEEEEEEeCC---CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEE
Q 007306 399 KLK-------------GHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 462 (608)
Q Consensus 399 ~~~-------------~~~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 462 (608)
.+. .|...+.+++|+|+ +..+++++.|+.+.+|+...++. ..+. ...+|. ..|++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~-~~~~h~---~~i~~~~ 221 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL---HVAA-KLPGHK---SLIRSIS 221 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE---EEEE-ECCCCC---SCEEEEE
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce---eeee-ecCCCC---cceeEEE
Confidence 332 57789999999997 89999999999998888776432 1233 445676 7999999
Q ss_pred EcCCC----CEEEE-EeCCcEEEEECCCC----------------------------------------------ceeee
Q 007306 463 FHPDQ----IHLLS-IHEGQIDVYEAPTL----------------------------------------------NHTSQ 491 (608)
Q Consensus 463 ~sp~~----~~l~~-~~d~~i~iwd~~~~----------------------------------------------~~~~~ 491 (608)
|+|++ ++|++ +.|+.|++||++++ +.+..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE 301 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence 99998 78888 58999999999764 44444
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
+. .|...|++++|+|++++|++|+.||.|++|++.+++....+.
T Consensus 302 ~~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 302 HD--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EC--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred Ee--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 54 468899999999999999999999999999999987666553
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.2e-31 Score=267.83 Aligned_cols=257 Identities=13% Similarity=0.081 Sum_probs=205.2
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCC----ceeeEecCCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETF----QTLATFANPPPIATYFILLP--QD-LFAFGFDDSSILVHCP 391 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~-~l~~~~~d~~i~vwd~ 391 (608)
+|...|++++|+ +++|++++ ||.|++||+.++ +....+.+|...|.+++|+| ++ +|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 799999999999 88999999 999999999876 46777889999999999999 58 9999999999999999
Q ss_pred CCC---------ceEEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceeccccee-------eeeccCCC
Q 007306 392 CTK---------KTKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLH-------SFQTGLVP 453 (608)
Q Consensus 392 ~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-------~~~~~~~~ 453 (608)
.++ +.+..+.+|...|.+++|+|+ +.++++++.||.|++||+++++........ ....+|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL- 167 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS-
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc-
Confidence 887 557788889999999999999 999999999999999999886543221111 0112344
Q ss_pred CccceEEEEEcCC---CCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC----CEEEEEEcCCeEEEE
Q 007306 454 ETTIVNHIQFHPD---QIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG----KCIYVSCKSGHVKVF 525 (608)
Q Consensus 454 ~~~~v~~v~~sp~---~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~sg~~dg~i~iw 525 (608)
..+.+++|+|+ +..+++ +.++.+.+|+...++.........|...|.+++|+|++ ++|++|+.||.|++|
T Consensus 168 --~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iw 245 (351)
T 3f3f_A 168 --QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIF 245 (351)
T ss_dssp --CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEE
T ss_pred --cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEE
Confidence 68999999997 888888 57888888888777653333334579999999999998 899999999999999
Q ss_pred eCCCCceeEEEe---------------------------------------ceeeccCCCcccccccEEEEEecCCCCEE
Q 007306 526 DTSTLELRCQIN---------------------------------------LTAYAQPGTISLELYPLVIAAHPLEPNRI 566 (608)
Q Consensus 526 d~~~~~~~~~~~---------------------------------------~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 566 (608)
|+.++....... .......+| ... +++++|+| ++.+|
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~--v~~~~~s~-~~~~l 321 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH-NGE--VWSVSWNL-TGTIL 321 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTT-SSC--EEEEEECS-SSCCE
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc-ccc--EEEEEEcC-CCCEE
Confidence 998752111000 000111244 333 45999999 79999
Q ss_pred EEEeCCCcEEEEeCCCCcc
Q 007306 567 ALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 567 as~s~Dg~v~iW~~~~~~~ 585 (608)
++|+.||.|+||++.+++.
T Consensus 322 ~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 322 SSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEEETTSCEEEEEECTTSC
T ss_pred EEecCCCcEEEEecCcCcc
Confidence 9999999999999998754
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-32 Score=272.68 Aligned_cols=247 Identities=12% Similarity=0.062 Sum_probs=206.3
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC--CCceeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~ 393 (608)
+|...|.+++|+ +++|++++ ||.|++||+. +++.+..+.+|...|++++|+++ + +|++|+.||.|++||+.+
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 699999999999 88999999 9999999998 67788889999999999999977 7 999999999999999999
Q ss_pred Cc--eEEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC----
Q 007306 394 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 465 (608)
Q Consensus 394 ~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---- 465 (608)
++ .+..+.+|...|.+++|+|+ +.++++++.|+.|++||+++..... .. ...+|. ..|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~-~~~~~~---~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE 161 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC---EE-EEECCT---TCEEEEEECCCC--
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee---eE-EecCCC---CceEEEEEcCcccc
Confidence 87 67788889999999999999 9999999999999999998853221 11 334566 6899999999
Q ss_pred ---------CCCEEEE-EeCCcEEEEECCCCc----eeeeecCCCCCCCeEEEEEecC---CCEEEEEEcCCeEEEEeCC
Q 007306 466 ---------DQIHLLS-IHEGQIDVYEAPTLN----HTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 466 ---------~~~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~---~~~l~sg~~dg~i~iwd~~ 528 (608)
++.++++ +.|+.|++||++++. ....+. .|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 6899998 589999999998765 333443 47899999999999 8999999999999999999
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
++......... ...+| ... +.+++|+| ++.+|++++.||.|++|++..+
T Consensus 240 ~~~~~~~~~~~--~~~~~-~~~--v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLL--KEEKF-PDV--LWRASWSL-SGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEES--SSSCC-SSC--EEEEEECS-SSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeee--ccccC-CCc--EEEEEEcC-CCCEEEEecCCCcEEEEeCCCC
Confidence 87532211111 01122 333 45999999 7999999999999999999854
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-31 Score=276.19 Aligned_cols=307 Identities=13% Similarity=0.086 Sum_probs=228.0
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc---ceee-ecccc--eeeEE-eeCCCCe------------------
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK---QSLE-EENVN--MESQL-YQPSSKL------------------ 313 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~---~~~~-~~~~~--~~~~~-~~~~~~~------------------ 313 (608)
..++.+++|+|+|++|+++ .++.|.+||+.+++ .... ..... ..+.. .....+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 4578999999999965555 67899999998887 3211 00000 00000 0000000
Q ss_pred ---------eeeccccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEEEEcC--CCceeeEec--CCCCCeEEEEEcCCC-
Q 007306 314 ---------VMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISIFSLE--TFQTLATFA--NPPPIATYFILLPQD- 375 (608)
Q Consensus 314 ---------~~~~~~~~~~~~~v~~v~~s--~~~l-~s~~-d~~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~- 375 (608)
.....-..+|...|.+++|+ +++| ++++ ||.|++||+. +++.+..+. .+...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 00000001467789999999 7775 8888 9999999999 888888886 567899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCceEE----EeeCccccEEEEEEeCC---CCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 376 LFAFGFDDSSILVHCPCTKKTKA----KLKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
.|++|+.+|.|++|++.++.... .+.+|...|.+++|+|+ +++|++++.|+.|++||+.++ ..+..+.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~~ 237 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC-----FIVDKWL 237 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-----TCEEEEC
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-----ceeeeee
Confidence 99999999999999998876554 77889999999999999 999999999999999999874 3444345
Q ss_pred ccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCC-----------------------CCCCCeEEE
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----------------------KMDLPITYA 504 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~~ 504 (608)
.+|. ..|.+++|+ ++++|++ +.|+.|++||+.+++++..+... .....|.++
T Consensus 238 ~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 313 (450)
T 2vdu_B 238 FGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKI 313 (450)
T ss_dssp CCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEE
T ss_pred cCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEE
Confidence 5777 799999999 9999999 58999999999999988777531 124679999
Q ss_pred EEecCCCEEEEEE-cCCeEEEEeC--CCC---ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC------C
Q 007306 505 TYSCDGKCIYVSC-KSGHVKVFDT--STL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT------N 572 (608)
Q Consensus 505 ~~s~~~~~l~sg~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~------D 572 (608)
+|+|++++|++++ .|+.|++|++ .++ +.+..+. ++ .. +.+++|+| ++.++++++. +
T Consensus 314 ~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~-------~~--~~--v~~~~~~~-~~~~v~~~~~~~~~~~~ 381 (450)
T 2vdu_B 314 IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT-------FP--YN--VISLSAHN-DEFQVTLDNKESSGVQK 381 (450)
T ss_dssp EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE-------CS--SC--EEEEEEET-TEEEEEECCTTCCSSCC
T ss_pred EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec-------cC--Cc--eEEEEecC-CcEEEEEecccCCCCCC
Confidence 9999999999999 8999999999 555 4444443 22 22 55999999 5544444343 5
Q ss_pred CcEEEEeCCCCcccc
Q 007306 573 GRVHVIEPLESEVEW 587 (608)
Q Consensus 573 g~v~iW~~~~~~~~~ 587 (608)
..|.+|.+.....+|
T Consensus 382 ~~i~v~~~~~~~~~~ 396 (450)
T 2vdu_B 382 NFAKFIEYNLNENSF 396 (450)
T ss_dssp CSEEEEEEETTTTEE
T ss_pred cceEEEEEEcCCCeE
Confidence 568999876554444
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=3.2e-31 Score=265.95 Aligned_cols=286 Identities=10% Similarity=0.033 Sum_probs=211.6
Q ss_pred CCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 257 SFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 257 ~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
.|.+.|++++|+|||++|++|+.++ ++||++.+... ++. .+...+..+++. +
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~------------~~~-------------~~~~~~~~~~~~~~~ 70 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH------------IMS-------------QEMRHLSKVRMLHRT 70 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE------------EEE-------------EECSCCCEEEECTTS
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce------------eee-------------eecCCeEEEEEcCCC
Confidence 3899999999999999999988775 67898765543 111 011236666776 6
Q ss_pred CEE-EEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCC-ceEEEeeCccccEEEEE
Q 007306 335 SHL-FSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTK-KTKAKLKGHQNRITCLA 411 (608)
Q Consensus 335 ~~l-~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~ 411 (608)
+.+ ++++ |++|++||+.+++.+..+. +...|.+++++++. ++++ .|+.|++||+.++ +.+..+.. ....++
T Consensus 71 ~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 71 NYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF-IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp SEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE-EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred CEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE-EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 666 4455 7899999999999999887 66789999999876 2223 3789999999988 66666654 444566
Q ss_pred EeCCCCEEEE--EcCCCcEEEEECCCCceec----------ccc-eeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCc
Q 007306 412 YSLSLNVLVS--SGADAQLCVWDAVGWKKLC----------SKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQ 477 (608)
Q Consensus 412 ~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~----------~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~ 477 (608)
+++ ..+++ |+.||.|++||+.++.... ..+ +. ...+|. +.|++++|+|+|++|++ +.|++
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~-~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV-LIKAHT---NPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCE-EECCCS---SCEEEEEECTTSSEEEEEETTCS
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE-EEEccC---CceEEEEECCCCCEEEEEeCCCC
Confidence 777 56666 5889999999998743100 011 33 566787 79999999999999999 58998
Q ss_pred -EEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEecee-----e----------
Q 007306 478 -IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTA-----Y---------- 541 (608)
Q Consensus 478 -i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-----~---------- 541 (608)
|++||+++++++..+..+.|...|.+++|+|+|++|++++.|+.|++||+..+.......... +
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNF 298 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEE
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEE
Confidence 999999999999998743378999999999999999999999999999998654221111000 0
Q ss_pred -ccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 542 -AQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 542 -~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.+.+. .... ..++|+| |++++++++.||.+++|++..++
T Consensus 299 ~~~~~~-~~~~--~~~a~~~-d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 299 KLSVDK-HVRG--CKIAWIS-ESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp ECCCCT-TCCC--CEEEESS-SSEEEEEETTTTEEEEEEEEEET
T ss_pred EeccCC-CCCc--eEEEEeC-CCCEEEEEeCCCeEEEEEEEcCC
Confidence 01111 1112 3789999 79999999999999999987654
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.2e-30 Score=267.69 Aligned_cols=280 Identities=16% Similarity=0.130 Sum_probs=226.5
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
...+.+++|+|++.++++++.++.|++||..+++... ....+. ..+|...|.+++|+ +.+
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~------------~~~~~~------~~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVR------------LSPPEK------YKKKLGFVETISIPEHNEL 183 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEE------------ECCCHH------HHTTCCEEEEEEEGGGTEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEee------------ecCccc------ccccCCceeEEEEcCCCEE
Confidence 4456799999987778888889999999987776411 100000 01588999999998 778
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEe
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYS 413 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~ 413 (608)
+++++ |+.|++||+.+++.+..+..|...+.+++|+|++ .+ ++++.|+.|++||+.+++.+..+..+ ..+.+++|+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc
Confidence 88888 8999999999999999999999999999999999 66 55668999999999999988888754 459999999
Q ss_pred CCCCEEEEEc--------CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEEC
Q 007306 414 LSLNVLVSSG--------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 483 (608)
Q Consensus 414 ~~~~~l~s~~--------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~ 483 (608)
|+++.+++++ .|+.|++||+.+++. +... .+. ..+.+++|+|+++.+++ + .++.|++||+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~-----~~~~--~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKL-----IDTI--GPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE-----EEEE--EEE---ECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcE-----Eeec--cCC---CCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 9999999888 588999999988543 2211 222 46889999999987665 4 7899999999
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc---------------CCeEEEEeCCCCceeEEEeceeeccCCCcc
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK---------------SGHVKVFDTSTLELRCQINLTAYAQPGTIS 548 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~ 548 (608)
.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.. .
T Consensus 333 ~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---------~ 400 (433)
T 3bws_A 333 KEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---------G 400 (433)
T ss_dssp TTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---------S
T ss_pred CCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---------C
Confidence 9998887774 3678999999999999998877 57999999999998877652 1
Q ss_pred cccccEEEEEecCCCCEEEEEeC-CCcEEEEeCCC
Q 007306 549 LELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPLE 582 (608)
Q Consensus 549 ~~v~~~~v~~sp~d~~~las~s~-Dg~v~iW~~~~ 582 (608)
.. +.+++|+| ++.+|++++. |+.|++|++..
T Consensus 401 ~~--~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 NQ--PTGLDVSP-DNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SS--EEEEEECT-TSCEEEEEETTTTEEEEEEETT
T ss_pred CC--CceEEEcC-CCCEEEEEECCCCeEEEEEecC
Confidence 12 45999999 7889888775 99999999863
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-32 Score=276.39 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=206.7
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
-...|.+++|||||+++|+++.|++|+ |...+.. + .+|...|++++|+ ..
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---------------------l-----~gh~~~v~~V~FsPdg- 64 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---------------------I-----NCNSKNLFHVKEFPLE- 64 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---------------------C-----SSBGGGTEEEEEECCC-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccce---------------------e-----cCCCccEEEEEECCCC-
Confidence 467999999999999999999999998 5333321 1 1699999999998 32
Q ss_pred EEEEeCCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccc-----cEEE
Q 007306 337 LFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-----RITC 409 (608)
Q Consensus 337 l~s~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-----~v~~ 409 (608)
.++.|++.+++....+. .|...|.+++|+|+| .||+++.||.|++||..+ ++..+. |.. .|.+
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~s 134 (588)
T 2j04_A 65 -------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHC 134 (588)
T ss_dssp -------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEE
T ss_pred -------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEE
Confidence 44455555444433343 558889999999999 999999999999999644 666666 665 4999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecc--cceeee---eccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECC
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KFLHSF---QTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 484 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~~~---~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~ 484 (608)
++|+|||++|++|+.||+|++||+.++..... ..+.++ ..+|. ..|.+++|+|+| .++++.|++|++||+.
T Consensus 135 vafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg-Laass~D~tVrlWd~~ 210 (588)
T 2j04_A 135 FEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV-LVAALSNNSVFSMTVS 210 (588)
T ss_dssp EEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE-EEEEETTCCEEEECCC
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc-EEEEeCCCeEEEEECC
Confidence 99999999999999999999999988532110 023322 35666 799999999999 5445799999999998
Q ss_pred CCcee---eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEE--e
Q 007306 485 TLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAA--H 559 (608)
Q Consensus 485 ~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~--s 559 (608)
++... +++.. .|...|.+++|+ |+.|++++ ++.|++||+.+++...... || ...++ .++| +
T Consensus 211 ~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-------gh-~~~V~--~va~~~s 276 (588)
T 2j04_A 211 ASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-------GS-LENFH--IIPLNHE 276 (588)
T ss_dssp SSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-------SC-CSCCC--EEEETTC
T ss_pred CCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-------CC-CceEE--EEEeeeC
Confidence 77732 34533 467899999999 68999997 6999999999887643332 54 45566 8999 9
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC
Q 007306 560 PLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~ 581 (608)
| |+..+++++.||+ ++|...
T Consensus 277 ~-d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 277 K-ESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp S-SCEEEEECSSCEE-EEEESS
T ss_pred C-CCCEEEEEcCCCC-EEEeec
Confidence 9 7899999999999 999974
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=262.18 Aligned_cols=280 Identities=11% Similarity=0.115 Sum_probs=217.8
Q ss_pred eeEeecCC---CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCC
Q 007306 214 RESTSLPD---ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS 290 (608)
Q Consensus 214 ~~~~~s~d---g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~ 290 (608)
..+.|+|+ |++|++++.||.|++||+.. .+......+.+ |...|++++|+|++++|++++.||.|++||+.+
T Consensus 43 ~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 43 GCLSFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp EEEEECCTTSSSEEEEEEETTSEEEEEEECT---TSCEEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCCCceEEEEECCCCcEEEEEcCC---CCceeEEEecc--ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 34589999 69999999999999999974 23333233444 999999999999999999999999999998876
Q ss_pred CcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE--e--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCC
Q 007306 291 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSAS-GGKISIFSLETFQTLATFANPPPI 365 (608)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~ 365 (608)
+.. .... +|...|.+++| + +++|++++ ||.|++||+.+++.+..+..+. .
T Consensus 118 ~~~---------------------~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~ 172 (368)
T 3mmy_A 118 NQA---------------------IQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R 172 (368)
T ss_dssp TEE---------------------EEEE---ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C
T ss_pred CCc---------------------eeec---cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C
Confidence 653 1111 48999999999 6 67899999 9999999999999998888665 4
Q ss_pred eEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEe--eCccccEEEEEEeCCCCE----EEEEcCCCcEEEEECCCCcee
Q 007306 366 ATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL--KGHQNRITCLAYSLSLNV----LVSSGADAQLCVWDAVGWKKL 439 (608)
Q Consensus 366 v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~s~~~d~~i~vwd~~~~~~~ 439 (608)
+.++.+.++ .+++++.++.+.+|++......... ..+...+.++.+.+++.. +++++.||.|++||++.....
T Consensus 173 ~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 173 CYCADVIYP-MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp EEEEEEETT-EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred ceEEEecCC-eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 555555543 7888889999999999876543222 124455667777665544 999999999999999885320
Q ss_pred cccceeeeeccCCC---------CccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecC
Q 007306 440 CSKFLHSFQTGLVP---------ETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCD 509 (608)
Q Consensus 440 ~~~~~~~~~~~~~~---------~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 509 (608)
..+. ...+|.. +...|++++|+|++++|++ +.||.|++||+.+++++..+.. |...|.+++|+|+
T Consensus 252 --~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 252 --KDNF-TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ--LDQPISACCFNHN 326 (368)
T ss_dssp --HHSE-EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--CSSCEEEEEECTT
T ss_pred --ccce-eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC--CCCCceEEEECCC
Confidence 1222 2334430 0016999999999999999 5899999999999999888864 6899999999999
Q ss_pred CCEEEEEEcCCeEEEEeCCC
Q 007306 510 GKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 510 ~~~l~sg~~dg~i~iwd~~~ 529 (608)
|++|++++.|+..+.|++.+
T Consensus 327 g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 327 GNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SSCEEEEECCCSTTCGGGCC
T ss_pred CCeEEEEecccccccccccC
Confidence 99999999998665555443
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-31 Score=264.87 Aligned_cols=275 Identities=11% Similarity=-0.003 Sum_probs=216.7
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
.+.+|+..+++|+.||+|++||+.+ ++.... + ....|.++.|+|+ +++++.|++|++|+.....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~----~~~~~~-~----~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~---- 106 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD----SKTITT-I----TTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI---- 106 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS----SSCEEE-E----EEECCCTTCCCCS---EEEECSTTEEEEEETTTEE----
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC----CcEEEE-E----ecCCceeeeeCCc---eEEecCCCeEEEEEccCce----
Confidence 4678899999999999999999985 333221 2 2457888889998 9999999999999987643
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEcCCCceeeEec-CCCCCeEEEE
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSLETFQTLATFA-NPPPIATYFI 370 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~~l~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~ 370 (608)
.+|+..++..+..... +|...|.+++|+ ++++++++ ||+|++||+.+++...... .+...+.+++
T Consensus 107 --------~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 107 --------TILDSKTNKVLREIEV-DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGV 177 (343)
T ss_dssp --------EEEETTTCCEEEEEEC-CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEE
T ss_pred --------EEeecCCcceeEEeec-CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEE
Confidence 4789888885544332 477899999998 67999999 9999999999999877764 4456899999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceE-EEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
|+|++ +|++|+.||.|++||+++++.+ ..+.+ |...|.+++|+|++.+|++++ |+.|++||+++.+... .+. .
T Consensus 178 ~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~-~ 253 (343)
T 3lrv_A 178 LHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYP-T 253 (343)
T ss_dssp ECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSC-C
T ss_pred ECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eec-c
Confidence 99999 9999999999999999999887 78888 999999999999999999999 5599999999854321 111 1
Q ss_pred eccCCCCccce--EEEEEcCCCCEEEEE-e-CCcEEEEECCCCceeeeecCCCCCCCeEEEEEec---CCCEEEEEEcCC
Q 007306 448 QTGLVPETTIV--NHIQFHPDQIHLLSI-H-EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC---DGKCIYVSCKSG 520 (608)
Q Consensus 448 ~~~~~~~~~~v--~~v~~sp~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~sg~~dg 520 (608)
...|. ..+ .+++|+|+|++|+++ . |+.+++|++.+....... .++..++|++ +...+++++.||
T Consensus 254 ~~~~~---~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~ 324 (343)
T 3lrv_A 254 YTIPE---FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDG 324 (343)
T ss_dssp CBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETT
T ss_pred ccccc---ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCC
Confidence 11122 223 469999999999994 5 899999999765432222 4577788888 889999999999
Q ss_pred eEEEEeCCC
Q 007306 521 HVKVFDTST 529 (608)
Q Consensus 521 ~i~iwd~~~ 529 (608)
.+.++-...
T Consensus 325 ~~~~~~~~~ 333 (343)
T 3lrv_A 325 GIAAILKTN 333 (343)
T ss_dssp EEEEEEECS
T ss_pred ceEEEEecC
Confidence 998876443
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=3e-29 Score=255.53 Aligned_cols=314 Identities=11% Similarity=0.073 Sum_probs=235.2
Q ss_pred CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEE-EEEeCCCcEEEEecCCCcceeeecccc
Q 007306 223 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 223 ~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l-~s~s~dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
..+++++.|+.|++||+.+ +++... +. +...+.+++|+|+|+++ ++++.|+.|++||..+++.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~----~~~~~~-~~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-------- 66 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS----NKVTAT-IP---VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-------- 66 (391)
T ss_dssp EEEEEETTTTEEEEEETTT----TEEEEE-EE---CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--------
T ss_pred EEEEEcCCCCEEEEEECCC----CeEEEE-ee---cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--------
Confidence 3578888999999999984 444432 33 24569999999999987 5666899999988766654
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-e
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-L 376 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 376 (608)
.... .+...+.+++|+ +++++.++ ++.|++||+.+++.+..+..+ ..+.+++|+|++ .
T Consensus 67 -------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 67 -------------IATV---PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKK 129 (391)
T ss_dssp -------------EEEE---ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred -------------EEEE---ECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCE
Confidence 1111 133489999999 77775555 699999999999998888754 468899999999 6
Q ss_pred E-EEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE-EEEcCCCcEEEEECCCCceecccceeeeeccCCCC
Q 007306 377 F-AFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 377 l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 454 (608)
+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+++++. +. ....+
T Consensus 130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~-~~~~~--- 199 (391)
T 1l0q_A 130 LYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-----ID-TVKVE--- 199 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EE-EEECS---
T ss_pred EEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-----EE-EEecC---
Confidence 6 78888999999999999998888765 457999999999887 6778899999999988542 22 22222
Q ss_pred ccceEEEEEcCCCCEEEEE----eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE-EEEEcCCeEEEEeCCC
Q 007306 455 TTIVNHIQFHPDQIHLLSI----HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI-YVSCKSGHVKVFDTST 529 (608)
Q Consensus 455 ~~~v~~v~~sp~~~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~sg~~dg~i~iwd~~~ 529 (608)
..+.+++|+|++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+|++| ++++.|+.|++||+.+
T Consensus 200 -~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 200 -AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp -SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 478899999999999884 478999999999998888764 3458899999999988 5667899999999999
Q ss_pred CceeEEEeceeeccC-C------CcccccccEEEEEec--CC-----C--CEEEEEeCCCcEEEEeCCCCcc
Q 007306 530 LELRCQINLTAYAQP-G------TISLELYPLVIAAHP--LE-----P--NRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 530 ~~~~~~~~~~~~~~~-g------~~~~~v~~~~v~~sp--~d-----~--~~las~s~Dg~v~iW~~~~~~~ 585 (608)
++.+..+..+..... | +...... ...|+. .. . -.+...+.|..+++|++.++..
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 276 NTITATMAVGKNPYASGQFIGSIPVQPVYP--SADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TEEEEEEECSSSEECCSSCEEECSSCCCCC--BCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CcEEEEEECCcCCCccceeeeccccccccc--ccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 998887764311100 0 0000011 122322 00 1 3466677889999999987764
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=5.8e-30 Score=256.81 Aligned_cols=271 Identities=10% Similarity=0.094 Sum_probs=206.1
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEE-EEeCCCcEEEEecCCCcc
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~-s~s~dg~i~iw~~~~~~~ 293 (608)
.++|+|||++|++|+.++ +++|+... ...... . +...+..++++++++.++ +++.|++|++||..+++.
T Consensus 24 ~v~fs~dg~~la~g~~~~-~~iw~~~~----~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 24 DYEFNQDQSCLILSTLKS-FEIYNVHP----VAHIMS-Q----EMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp EEEECTTSSEEEEECSSE-EEEEEETT----EEEEEE-E----ECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred EEEECCCCCEEEEEcCCE-EEEEecCC----cceeee-e----ecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 458999999999998775 78999873 333321 1 233588899999998874 567789999988776654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEeCCcEEEEEcCCC-ceeeEecCCCCCeEEEEEc
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSASGGKISIFSLETF-QTLATFANPPPIATYFILL 372 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~ 372 (608)
+... .+...|.+++|+.+.++++.|+.|++||+.++ +.+..+.. ....++++
T Consensus 94 ---------------------~~~~---~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 94 ---------------------VSRI---KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp ---------------------EEEE---ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred ---------------------EEEE---ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 1111 25678999999966777777999999999988 66666654 44456677
Q ss_pred CCC-eEEE-EeCCCcEEEEeCCCCc----------------eEEEeeCccccEEEEEEeCCCCEEEEEcCCCc-EEEEEC
Q 007306 373 PQD-LFAF-GFDDSSILVHCPCTKK----------------TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQ-LCVWDA 433 (608)
Q Consensus 373 ~~~-~l~~-~~~d~~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~-i~vwd~ 433 (608)
+ . ..++ |+.||.|++||+.++. .+..+.+|...|.+++|+|+|++|++++.|++ |++||+
T Consensus 147 ~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 147 N-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp T-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred c-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 7 5 3333 7899999999999865 26788999999999999999999999999998 999999
Q ss_pred CCCceecccceeeeecc-CCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeee--e-----------------
Q 007306 434 VGWKKLCSKFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQ--L----------------- 492 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~--~----------------- 492 (608)
++++ .+.++..+ |. ..|.+++|+|+|++|++ +.|+.|++||++.+..... +
T Consensus 226 ~~~~-----~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 226 EDGV-----LVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp TTCC-----EEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred CCCc-----EEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 9843 44434434 66 79999999999999999 5889999999976532111 0
Q ss_pred -cC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 493 -VP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 493 -~~-~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
.. .........++|++||++|++++.||.+++|++..++
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 00 0112234678999999999999999999999986543
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.8e-30 Score=264.08 Aligned_cols=243 Identities=15% Similarity=0.150 Sum_probs=199.9
Q ss_pred CCCCCeEEEEEe---CCEEEEEe-CCcEEEEEcCC----------CceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCc
Q 007306 322 DPKDSISCFALR---GSHLFSAS-GGKISIFSLET----------FQTLATFANPPPIATYFILLPQD--LFAFGFDDSS 385 (608)
Q Consensus 322 ~~~~~v~~v~~s---~~~l~s~~-d~~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~ 385 (608)
+|.+.|++++|+ +.+|++++ ||.|++||+.+ .+.+..+.+|...|.+++|+|++ .|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 599999999999 35888888 99999999987 67788889999999999999998 8999999999
Q ss_pred EEEEeCCCCce-------EEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccc
Q 007306 386 ILVHCPCTKKT-------KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTI 457 (608)
Q Consensus 386 i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (608)
|++||+.++.. ...+.+|...|.+++|+| ++..+++++.||.|++||+++... ...+. ....|. ..
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--~~~~~-~~~~~~---~~ 279 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--SKPSH-TVDAHT---AE 279 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS--SSCSE-EEECCS---SC
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC--Cccee-EeecCC---CC
Confidence 99999987422 456778999999999999 778999999999999999997431 12333 334666 68
Q ss_pred eEEEEEcCCCC-EEEE-EeCCcEEEEECCC-CceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCCC---
Q 007306 458 VNHIQFHPDQI-HLLS-IHEGQIDVYEAPT-LNHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTL--- 530 (608)
Q Consensus 458 v~~v~~sp~~~-~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~--- 530 (608)
|++++|+|++. ++++ +.|+.|++||+++ ..++..+.. |...|.+++|+|+++ +|++++.||.|+|||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 99999999997 5666 4889999999987 456666654 689999999999995 6999999999999999873
Q ss_pred -----------ceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEEEEeCCCcEEEEeCCCC
Q 007306 531 -----------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 531 -----------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s~Dg~v~iW~~~~~ 583 (608)
+++..+. || ... +.+++|+| ++. +|++++.||.|+||++...
T Consensus 358 ~~~~~~~~~~~~~~~~~~-------~h-~~~--v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHG-------GH-TAK--ISDFSWNP-NEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CCHHHHHHCCTTEEEECC-------CC-SSC--EEEEEECS-SSTTEEEEEETTSEEEEEEECHH
T ss_pred cCccccccCCcceEEEcC-------CC-CCC--ceEEEECC-CCCCEEEEEECCCCEEEeEcccc
Confidence 2222222 44 333 44999999 566 9999999999999999754
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.6e-29 Score=260.68 Aligned_cols=251 Identities=14% Similarity=0.190 Sum_probs=201.1
Q ss_pred CCCcEEEEEEeeC-CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 258 FGGRVVRLIYSHS-GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 258 h~~~V~~~~fsp~-g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
|.+.|++++|+|+ +.+|++++.||.|++|++.+...... .......... ..+|...|.+++|+ +
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------~~~~~~~~~~--~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------PSGECQPDLR--LRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------TTCCCCCSEE--EECCSSCCCCEEECTTS
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------ccccCCCcEE--ecCCCCCeEEEEeCCCC
Confidence 8999999999997 78999999999999999875321000 0000111111 11699999999999 5
Q ss_pred C-EEEEEe-CCcEEEEEcCCCce-------eeEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCC---ceEEEe
Q 007306 335 S-HLFSAS-GGKISIFSLETFQT-------LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTK---KTKAKL 400 (608)
Q Consensus 335 ~-~l~s~~-d~~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~vwd~~~~---~~~~~~ 400 (608)
. +|++|+ ||.|++||+.++.. ...+.+|...|.+++|+|+ + .|++++.|+.|++||++++ +.+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 5 999999 99999999987322 4566789999999999995 5 9999999999999999987 567778
Q ss_pred eCccccEEEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC-EEEE-EeCCc
Q 007306 401 KGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI-HLLS-IHEGQ 477 (608)
Q Consensus 401 ~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-~l~~-~~d~~ 477 (608)
..|...|++++|+|++. ++++|+.||.|++||+++.. .++. ...+|. ..|.+++|+|+++ ++++ +.|+.
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----~~~~-~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----LKLH-SFESHK---DEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT----SCSE-EEECCS---SCEEEEEECSSCTTEEEEEETTSC
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC----CCeE-EeecCC---CCEEEEEECCCCCCEEEEEeCCCc
Confidence 88999999999999887 68899999999999998732 2344 445666 7899999999996 4666 58999
Q ss_pred EEEEECCCC--------------ceeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCCCc
Q 007306 478 IDVYEAPTL--------------NHTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 478 i~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~~~ 531 (608)
|++||+... ..+..+ .+|...|.+++|+|+++ +|++++.||.|+||++....
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEEC--CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEc--CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 999999762 333343 34688999999999999 89999999999999997653
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-30 Score=285.85 Aligned_cols=248 Identities=13% Similarity=0.075 Sum_probs=206.8
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcC--CCceeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCC
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLE--TFQTLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~ 393 (608)
+|.+.|++++|+ +++|++|+ ||.|++||+. +++....+.+|...|++++|+|+ + .|++|+.||.|++||+.+
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 799999999999 88999999 9999999998 56788889999999999999988 8 999999999999999999
Q ss_pred Cc--eEEEeeCccccEEEEEEeCC--CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC----
Q 007306 394 KK--TKAKLKGHQNRITCLAYSLS--LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP---- 465 (608)
Q Consensus 394 ~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp---- 465 (608)
++ .+..+.+|...|.+++|+|+ ++.+++|+.||.|++||++++.... .. ...+|. ..|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~---~~-~~~~~~---~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PI-IIDAHA---IGVNSASWAPATIE 159 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC---CE-EEECCS---SCEEEEEECCCC--
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc---ee-EeecCC---CceEEEEecCcccc
Confidence 86 67788889999999999999 9999999999999999998853221 12 344666 7899999999
Q ss_pred ---------CCCEEEE-EeCCcEEEEECCCC----ceeeeecCCCCCCCeEEEEEecC---CCEEEEEEcCCeEEEEeCC
Q 007306 466 ---------DQIHLLS-IHEGQIDVYEAPTL----NHTSQLVPDKMDLPITYATYSCD---GKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 466 ---------~~~~l~~-~~d~~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~s~~---~~~l~sg~~dg~i~iwd~~ 528 (608)
++.++++ +.||.|++||++++ .....+. .|...|.+++|+|+ ++++++|+.||.|++||+.
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 5888888 58999999999877 3444444 47899999999999 9999999999999999999
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
+++....... ....+| ...+. +++|+| ++.+|++|+.||.|++|++.++.
T Consensus 238 ~~~~~~~~~~--~~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 238 NEQGPWKKTL--LKEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSCCBCCB--SSSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCcceeEE--eccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence 8753221111 011122 33444 999999 79999999999999999998654
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.2e-30 Score=256.85 Aligned_cols=271 Identities=7% Similarity=0.018 Sum_probs=202.0
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CC
Q 007306 265 LIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GG 343 (608)
Q Consensus 265 ~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~ 343 (608)
..+.+++.++++|+.||+|++||+.+++.... +. ...|.++.|+.. +++++ |+
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~----------~~---------------~~~v~~~~~~~~-~~s~s~D~ 95 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITT----------IT---------------TPNPRTGGEHPA-IISRGPCN 95 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEE----------EE---------------EECCCTTCCCCS-EEEECSTT
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEE----------Ee---------------cCCceeeeeCCc-eEEecCCC
Confidence 34567889999999999999999887765211 00 123444455522 77788 88
Q ss_pred cEEEEEcC---------CCceeeEec-CCCCCeEEEEEcC--CC-eEEEEeCCCcEEEEeCCCCceEEEeeC-ccccEEE
Q 007306 344 KISIFSLE---------TFQTLATFA-NPPPIATYFILLP--QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITC 409 (608)
Q Consensus 344 ~i~vwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~ 409 (608)
+|++|+.. +++.+..+. +|...|.+++|+| ++ ++++|+.||.|++||+++++....... |...|.+
T Consensus 96 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 96 RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSS 175 (343)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCE
T ss_pred eEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEE
Confidence 88888654 555555555 6778899999999 99 999999999999999999988776644 5568999
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccce-eeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCce
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH 488 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~ 488 (608)
++|+|++.+|++|+.||.|++||+++++ .+ ..+..+|. +.|++++|+|++.+|+++.++.|++||+++++.
T Consensus 176 ~~~~pdg~~lasg~~dg~i~iwd~~~~~-----~~~~~~~~~h~---~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 176 GVLHKDSLLLALYSPDGILDVYNLSSPD-----QASSRFPVDEE---AKIKEVKFADNGYWMVVECDQTVVCFDLRKDVG 247 (343)
T ss_dssp EEECTTSCEEEEECTTSCEEEEESSCTT-----SCCEECCCCTT---SCEEEEEECTTSSEEEEEESSBEEEEETTSSTT
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCC-----CCccEEeccCC---CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCc
Confidence 9999999999999999999999999854 22 21222377 799999999999999997678999999999887
Q ss_pred eeeecCC-CCCCCe--EEEEEecCCCEEEEEEc-CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec--CC
Q 007306 489 TSQLVPD-KMDLPI--TYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP--LE 562 (608)
Q Consensus 489 ~~~~~~~-~~~~~v--~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp--~d 562 (608)
+..+... .|...+ .+++|+|+|++|++++. |+.|++|++.++....... . +..++|+| .+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~------------~--~~~~~~~~~~~~ 313 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKD------------E--ESALCLQSDTAD 313 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEE------------E--EEECCC----CC
T ss_pred ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEec------------C--ceeEecCccccc
Confidence 6655421 112233 46999999999999998 9999999997765443321 1 22556665 13
Q ss_pred CCEEEEEeCCCcEEEEeCCCC
Q 007306 563 PNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~~~ 583 (608)
...+++++.||.++++-....
T Consensus 314 ~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 314 FTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp CCEEEEEEETTEEEEEEECSS
T ss_pred cceeEEEecCCceEEEEecCC
Confidence 678888889999888865443
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=262.29 Aligned_cols=247 Identities=12% Similarity=0.068 Sum_probs=193.0
Q ss_pred CCCcEEEEEEeeCCCEE-EEEeCCCcEEEEecC--CCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-
Q 007306 258 FGGRVVRLIYSHSGDFL-VALTQTATHKLWKWQ--SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR- 333 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l-~s~s~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s- 333 (608)
|.+.|++++|+|+|++| ++++.||.|++|++. ++.... .+. ...|...|.+++|+
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~----------~~~-----------~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK----------LRK-----------RFCFSKRPNAISIAE 159 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE----------EEE-----------EEECSSCEEEEEECT
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee----------eee-----------cccCCCCceEEEEcC
Confidence 56689999999999996 889899999999987 444311 111 00377899999999
Q ss_pred -CCEEEEEe-CCcEEEEEcCCCceee----EecCCCCCeEEEEEcCC---C-eEEEEeCCCcEEEEeCCCCceEEE-eeC
Q 007306 334 -GSHLFSAS-GGKISIFSLETFQTLA----TFANPPPIATYFILLPQ---D-LFAFGFDDSSILVHCPCTKKTKAK-LKG 402 (608)
Q Consensus 334 -~~~l~s~~-d~~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~---~-~l~~~~~d~~i~vwd~~~~~~~~~-~~~ 402 (608)
+++|++++ +|.|++|++.+++... .+.+|...|++++|+|+ + +|++|+.|+.|++||+.+++.+.. +.+
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~ 239 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence 88999999 9999999998877554 77789999999999999 8 999999999999999999988877 558
Q ss_pred ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee----e-eccC-----------CCCccceEEEEEcCC
Q 007306 403 HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS----F-QTGL-----------VPETTIVNHIQFHPD 466 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~----~-~~~~-----------~~~~~~v~~v~~sp~ 466 (608)
|...|.+++|+ ++++|++++.|+.|++||+.+++......... + ...| ......|.+++|+|+
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 99999999999 99999999999999999999865432221110 0 0000 000146899999999
Q ss_pred CCEEEE-E-eCCcEEEEEC--CCC---ceeeeecCCCCCCCeEEEEEecCCCEEEEEEc------CCeEEEEeCCC
Q 007306 467 QIHLLS-I-HEGQIDVYEA--PTL---NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK------SGHVKVFDTST 529 (608)
Q Consensus 467 ~~~l~~-~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~------dg~i~iwd~~~ 529 (608)
++++++ + .++.|++|++ .++ ..+..+.. + ..|.+++|+|++.++++++. ++.|.+|.+..
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~--~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF--P-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC--S-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCEEEEEECCCCeEEEEEeccCCCCceeeccEecc--C-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 999998 4 6899999999 555 56666654 3 78999999996544444443 45578887643
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-30 Score=284.24 Aligned_cols=249 Identities=15% Similarity=0.175 Sum_probs=206.6
Q ss_pred CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 256 NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 256 ~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
.+|.+.|++++|+|+|++|++|+.||.|++|++.++.. ...... .+|..+|.+++|+
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------~~~~~l--~~h~~~V~~l~~s~~ 64 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------KLIDTL--TGHEGPVWRVDWAHP 64 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-------------------EEEEEE--CCCSSCEEEEEECCT
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-------------------ccceec--cCCcCceEEEEecCC
Confidence 35999999999999999999999999999998764322 111111 1699999999998
Q ss_pred --CCEEEEEe-CCcEEEEEcCCCc--eeeEecCCCCCeEEEEEcCC--C-eEEEEeCCCcEEEEeCCCCc--eEEEeeCc
Q 007306 334 --GSHLFSAS-GGKISIFSLETFQ--TLATFANPPPIATYFILLPQ--D-LFAFGFDDSSILVHCPCTKK--TKAKLKGH 403 (608)
Q Consensus 334 --~~~l~s~~-d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~-~l~~~~~d~~i~vwd~~~~~--~~~~~~~~ 403 (608)
+++|++|+ ||.|++||+.+++ .+..+.+|...|++++|+|+ + .+++|+.||.|++||++++. ....+.+|
T Consensus 65 ~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp TSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 57999999 9999999999887 77788899999999999999 8 99999999999999998873 34566789
Q ss_pred cccEEEEEEeC-------------CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC---C
Q 007306 404 QNRITCLAYSL-------------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---Q 467 (608)
Q Consensus 404 ~~~v~~~~~~~-------------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---~ 467 (608)
...|.+++|+| ++..+++|+.||.|++||++++.... .... ...+|. ..|++++|+|+ +
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~-~~~~h~---~~V~~l~~sp~~~~~ 219 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-VLES-TLEGHS---DWVRDVAWSPTVLLR 219 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE-EEEE-EECCCS---SCEEEEEECCCCSSS
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc-eeee-eecCCC---CcEEEEEeccCCCCC
Confidence 99999999999 58999999999999999998753211 2222 455777 79999999999 8
Q ss_pred CEEEE-EeCCcEEEEECCCCcee---eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 468 IHLLS-IHEGQIDVYEAPTLNHT---SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 468 ~~l~~-~~d~~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
+++++ +.||.|++||+.++... .......|...|++++|+|+|+++++|+.||.|++|++.++
T Consensus 220 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 220 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99998 58999999999876421 12222346889999999999999999999999999999853
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.6e-30 Score=263.20 Aligned_cols=300 Identities=8% Similarity=0.024 Sum_probs=194.3
Q ss_pred CCcEEEEEE---eeCCCEEEEEeCCCcEEEEecCCCcceeeec-----------ccceeeEEeeCCCCeeeeccccCCCC
Q 007306 259 GGRVVRLIY---SHSGDFLVALTQTATHKLWKWQSNKQSLEEE-----------NVNMESQLYQPSSKLVMTNDIAADPK 324 (608)
Q Consensus 259 ~~~V~~~~f---sp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (608)
.....++.| +|++..+++++.++.|.+|+........... ........|+....... ..|.
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 89 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSE-----NLHD 89 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEEC-----C---
T ss_pred CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccc-----cccC
Confidence 334555666 4555556666778899999864332211100 01111122222111111 1344
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCcee-----eEecCCCCCeEEEEEcC--------CC-eEEEEeCCCcEE
Q 007306 325 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTL-----ATFANPPPIATYFILLP--------QD-LFAFGFDDSSIL 387 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~-~l~~~~~d~~i~ 387 (608)
..+....++ +.++++++ |++|++||+.+++.. ..+.+|.+.|.+++|+| |+ +|++|+.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 444444455 67899999 999999999887653 34679999999999998 78 999999999999
Q ss_pred EEeCCCCceEEEeeCccccEEEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecccce-------------------eee
Q 007306 388 VHCPCTKKTKAKLKGHQNRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFL-------------------HSF 447 (608)
Q Consensus 388 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~-------------------~~~ 447 (608)
+||+.++..+..+.+|...|.+++|+|++. +|++++.|++|++||+++++....... ...
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 249 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCH 249 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeee
Confidence 999998888888888999999999999874 799999999999999988643211000 001
Q ss_pred eccCCCCccceEEEEEc-CCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEE------------------EEEe
Q 007306 448 QTGLVPETTIVNHIQFH-PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITY------------------ATYS 507 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~s-p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~------------------~~~s 507 (608)
..+|. ..+.++.|+ |+++.+++ +.|+.+++||+.+++....+.. |...+.. ..|+
T Consensus 250 ~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 250 SSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD--STMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp --CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred ccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee--ecCccccEEEccccccccccCcceeEEEc
Confidence 12444 678889886 89999998 4899999999987765554432 2222222 2333
Q ss_pred c--CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 508 C--DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 508 ~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
| ++.++++|+.||.|++||+.+++...... +| ...|. +++|+| ||++||+++.|| +.+|++
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-------~~-~~~V~--svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-------QL-GMPIV--DFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-------EC-SSCEE--EEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEec-------CC-CCcEE--EEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 3 44577888899999999999998877665 33 33444 999999 899999998776 666655
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=6.7e-28 Score=249.08 Aligned_cols=273 Identities=12% Similarity=0.036 Sum_probs=218.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEee--cCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL--PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l--~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
.+.|+|++..+++++.|+.|++||+.+ ++...... ...+|...|++++|+|+|+++++++.|+.|++||..+++
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 457999888888888999999999984 44333210 012489999999999999999999999999999887665
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEE-EEe-CCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~-s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
. ..... .|...+.+++|+ ++.++ +++ |+.|++||+.+++.+..+..+ ..+.+
T Consensus 203 ~---------------------~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~ 258 (433)
T 3bws_A 203 Y---------------------KATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRG 258 (433)
T ss_dssp E---------------------EEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEE
T ss_pred E---------------------EEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceE
Confidence 4 11111 478899999999 66664 554 899999999999988887754 45899
Q ss_pred EEEcCCC-eEEEEe--------CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE-EEEEcCCCcEEEEECCCCce
Q 007306 369 FILLPQD-LFAFGF--------DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 369 ~~~~~~~-~l~~~~--------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~ 438 (608)
++|+|++ .+++++ .|+.|++||+.+++.+..+. |...+.+++|+|+++. +++++.|+.|++||+.+++.
T Consensus 259 ~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~ 337 (433)
T 3bws_A 259 LLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV 337 (433)
T ss_dssp EEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE
Confidence 9999999 888877 48899999999998777663 6668999999999975 46668999999999997542
Q ss_pred ecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-e---------------CCcEEEEECCCCceeeeecCCCCCCCeE
Q 007306 439 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H---------------EGQIDVYEAPTLNHTSQLVPDKMDLPIT 502 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~---------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 502 (608)
+..+. +. ..+.+++|+|+|++++++ . ||.|++||+.+++.+..+.. ...+.
T Consensus 338 -----~~~~~--~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~ 404 (433)
T 3bws_A 338 -----QKSIP--VF---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPT 404 (433)
T ss_dssp -----EEEEE--CS---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEE
T ss_pred -----EEEec--CC---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCc
Confidence 23222 22 578999999999988884 3 46999999999998888764 56799
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEeCCC
Q 007306 503 YATYSCDGKCIYVSCK-SGHVKVFDTST 529 (608)
Q Consensus 503 ~~~~s~~~~~l~sg~~-dg~i~iwd~~~ 529 (608)
+++|+|+|++|++++. |+.|++|++..
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999999998875 99999999864
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.1e-27 Score=244.00 Aligned_cols=264 Identities=16% Similarity=0.138 Sum_probs=211.9
Q ss_pred CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE-EEEe-CCcEEE
Q 007306 272 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL-FSAS-GGKISI 347 (608)
Q Consensus 272 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l-~s~~-d~~i~v 347 (608)
..+++++.|+.|++||+.+++. .... .+...+.+++|+ ++++ ++++ |+.|++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~---------------------~~~~---~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v 58 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKV---------------------TATI---PVGSNPMGAVISPDGTKVYVANAHSNDVSI 58 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE---------------------EEEE---ECSSSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeE---------------------EEEe---ecCCCcceEEECCCCCEEEEECCCCCeEEE
Confidence 3578888899999998876654 1111 133458999999 6666 5666 999999
Q ss_pred EEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE-EEEcC
Q 007306 348 FSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGA 424 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~ 424 (608)
||+.+++.+..+..+. .+.+++|+|++ .++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.
T Consensus 59 ~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~ 136 (391)
T 1l0q_A 59 IDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG 136 (391)
T ss_dssp EETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT
T ss_pred EECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCC
Confidence 9999999998887655 89999999999 664 5557799999999999988888754 468999999999977 78888
Q ss_pred CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeE
Q 007306 425 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPIT 502 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 502 (608)
|+.|++||+.+++. +. ....+ ..+.+++|+|+++++++ + .++.|++||+++++.+..+. +...+.
T Consensus 137 ~~~v~~~d~~~~~~-----~~-~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~ 203 (391)
T 1l0q_A 137 DKTVSVINTVTKAV-----IN-TVSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---VEAAPS 203 (391)
T ss_dssp TTEEEEEETTTTEE-----EE-EEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---CSSEEE
T ss_pred CCEEEEEECCCCcE-----EE-EEecC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---cCCCcc
Confidence 99999999988542 33 22233 35789999999998865 4 67899999999998887774 356789
Q ss_pred EEEEecCCCEEEEEE---cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEE-EEEeCCCcEEEE
Q 007306 503 YATYSCDGKCIYVSC---KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI-ALGLTNGRVHVI 578 (608)
Q Consensus 503 ~~~~s~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l-as~s~Dg~v~iW 578 (608)
+++|+|+|++|++++ .++.|++||+.+++.+..+..+ . .+.+++|+| ++.++ ++++.|+.|++|
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~---~~~~~~~s~-dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--------P---DPAGIAVTP-DGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--------S---SEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--------C---CccEEEEcc-CCCEEEEEcCCCCEEEEE
Confidence 999999999999988 6899999999999887776532 2 145899999 67766 777899999999
Q ss_pred eCCCCccc
Q 007306 579 EPLESEVE 586 (608)
Q Consensus 579 ~~~~~~~~ 586 (608)
|+.+++..
T Consensus 272 d~~~~~~~ 279 (391)
T 1l0q_A 272 DTATNTIT 279 (391)
T ss_dssp ETTTTEEE
T ss_pred ECCCCcEE
Confidence 99987754
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.1e-28 Score=232.22 Aligned_cols=236 Identities=11% Similarity=0.081 Sum_probs=176.1
Q ss_pred eEEEEEe--CC---EEEEEeCCcEEEEEcCCC---ceeeEecCCCC-------------------------CeEEEEEcC
Q 007306 327 ISCFALR--GS---HLFSASGGKISIFSLETF---QTLATFANPPP-------------------------IATYFILLP 373 (608)
Q Consensus 327 v~~v~~s--~~---~l~s~~d~~i~vwd~~~~---~~~~~~~~~~~-------------------------~v~~~~~~~ 373 (608)
+.++-|- +- .+++++...|++|+..++ +.++++..|.. .|..++++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~sp 121 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSS 121 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECC
Confidence 4555565 22 577778999999999988 77777776654 355677778
Q ss_pred C----C-eEEEEeC--------------------CCcEEEEeC-CCCceEEEeeCccccEEEEEEeC---CCCEEEEEcC
Q 007306 374 Q----D-LFAFGFD--------------------DSSILVHCP-CTKKTKAKLKGHQNRITCLAYSL---SLNVLVSSGA 424 (608)
Q Consensus 374 ~----~-~l~~~~~--------------------d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~ 424 (608)
+ + .+++++. |+.|++|++ .+|+.+..+.+|...++.++|+| ++..|++++.
T Consensus 122 d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 122 DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecC
Confidence 8 6 6666553 778888888 44777777778888888888888 7789999999
Q ss_pred CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE------------E-EeCCcEEEEECCCCceeee
Q 007306 425 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL------------S-IHEGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~------------~-~~d~~i~iwd~~~~~~~~~ 491 (608)
|++|++||+.+++ .+.++. +|......+.+++|+|+|++++ + +.|++|++||..+++.+..
T Consensus 202 D~TIkIWDl~TGk-----~l~tL~-g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v 275 (356)
T 2w18_A 202 MNNIVIWNLKTGQ-----LLKKMH-IDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGV 275 (356)
T ss_dssp TSEEEEEETTTCC-----EEEEEE-CCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEE
T ss_pred CCcEEEEECCCCc-----EEEEEc-CCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEE
Confidence 9999999999954 445333 3221114678889999998874 3 3678999999999998766
Q ss_pred ec---CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 492 LV---PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 492 ~~---~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
+. ..+|...+.+..++ +.++++|+.|++|+|||+.+++.+.++. ||+...+. .++|+| |+.+|++
T Consensus 276 ~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~vafSP-DG~~LaS 343 (356)
T 2w18_A 276 MLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FVKWSG-TDSHLLA 343 (356)
T ss_dssp EEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EEEECS-SSSEEEE
T ss_pred EEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EEEECC-CCCEEEE
Confidence 52 22455555555444 8899999999999999999999999886 45343333 689999 8999999
Q ss_pred EeCCCcEEEEeC
Q 007306 569 GLTNGRVHVIEP 580 (608)
Q Consensus 569 ~s~Dg~v~iW~~ 580 (608)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999996
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.8e-28 Score=249.62 Aligned_cols=285 Identities=10% Similarity=0.041 Sum_probs=190.7
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCC----ceeeEeecC------------------CCCCCcEEEEEEeeCCCEEE
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPD------------------NSFGGRVVRLIYSHSGDFLV 275 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~----~~~~~~l~~------------------~~h~~~V~~~~fsp~g~~l~ 275 (608)
.+|++..++.++.|+.|++|+........ ......... ..|...+....+++++.+|+
T Consensus 26 ~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 105 (393)
T 4gq1_A 26 QSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA 105 (393)
T ss_dssp TSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred CCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence 35566666666778899999875321110 011100000 12333444445556777899
Q ss_pred EEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----------CCEEEEEe-CCc
Q 007306 276 ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----------GSHLFSAS-GGK 344 (608)
Q Consensus 276 s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----------~~~l~s~~-d~~ 344 (608)
+++.|++|+|||...+..... ..+. ...+|...|++++|+ +++|++++ |++
T Consensus 106 s~~~d~~v~lw~~~~~~~~~~----------------~~~~--~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 106 CVCQDNTVRLIITKNETIITQ----------------HVLG--GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp EEETTSCEEEEEEETTEEEEE----------------EEEC--TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred EEeCCCcEEEEECCCCcccee----------------eeec--ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 999999999999877654110 0111 122799999999996 46899999 999
Q ss_pred EEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE-----------------------
Q 007306 345 ISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----------------------- 399 (608)
Q Consensus 345 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~----------------------- 399 (608)
|+|||+.++.++..+..|...+.+++|+|++ +|++|+.|++|++||+++++....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 9999999988888888899999999999988 799999999999999988754322
Q ss_pred --eeCccccEEEEEEe-CCCCEEEEEcCCCcEEEEECCCCceecccceee-------------eeccCCCCccceEEEEE
Q 007306 400 --LKGHQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-------------FQTGLVPETTIVNHIQF 463 (608)
Q Consensus 400 --~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~v~~ 463 (608)
..+|...+.++.|+ |+++.+++++.|+++++||+..+.......... ....+ .......+
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 323 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF----PSLLGACP 323 (393)
T ss_dssp ----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS----CCSSCCEE
T ss_pred eecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc----CcceeEEE
Confidence 23577788899987 799999999999999999998744221100000 00001 11122334
Q ss_pred cC-CCC-EEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 464 HP-DQI-HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 464 sp-~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
+| .+. +++++ .|+.|++||+.+++....... |..+|.+++|+|||++||+++.+| +.+|.+
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 43 344 44455 789999999999988777654 578999999999999999998766 556654
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.2e-28 Score=232.18 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=146.1
Q ss_pred CCEEEEEe---CCcEEEEEc-CCCceeeEecCCCCCeEEEEEcC---CC-eEEEEeCCCcEEEEeCCCCceEEEeeCcc-
Q 007306 334 GSHLFSAS---GGKISIFSL-ETFQTLATFANPPPIATYFILLP---QD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ- 404 (608)
Q Consensus 334 ~~~l~s~~---d~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~- 404 (608)
++.+.++. |+.|++|++ .+|+.+..+..|...++.++|++ ++ .|++|+.|++|++||+.+|++++++.+|.
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~ 224 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS 224 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC-
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc
Confidence 45555543 899999999 55889899999999999999999 66 99999999999999999999999998754
Q ss_pred --ccEEEEEEeCCCCEE------------EEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 405 --NRITCLAYSLSLNVL------------VSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 405 --~~v~~~~~~~~~~~l------------~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
..+.+++|+|+|.++ ++|+.|++|++||..+++......+. ++.+|. ..+.+..++ +..+
T Consensus 225 ~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~p~Gh~---~~~lsg~~s--g~~l 298 (356)
T 2w18_A 225 YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-LPPGQA---GRFLEGDVK--DHCA 298 (356)
T ss_dssp --CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-CCTTCC---CCEEEEEEE--TTEE
T ss_pred ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-ccCCCc---ceeEccccC--CCEE
Confidence 467788999999876 56788999999999986543221111 235665 344444444 7788
Q ss_pred EEE-eCCcEEEEECCCCceeeeecCCCCCCC-eEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 471 LSI-HEGQIDVYEAPTLNHTSQLVPDKMDLP-ITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 471 ~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
+++ .|++|+|||+.+++++.++.. |... +.+++|||||++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 884 799999999999999999864 4554 446899999999999999999999995
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=9.4e-27 Score=245.61 Aligned_cols=329 Identities=10% Similarity=0.070 Sum_probs=241.8
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEec--CCCcce
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW--QSNKQS 294 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~--~~~~~~ 294 (608)
.++|++..+++++.|++|.+||... +++... ++. +|. +.+++|||||++|++++.|++|.+||+ .+.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t----~~~~~~-i~~-g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~- 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS----KKIVKV-IDT-GYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK- 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT----CCEEEE-EEC-STT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC----ceEEEE-Eec-Ccc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-
Confidence 4889999999999999999999974 444432 332 233 899999999999999999999999987 44432
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEEcCCCceeeEecCC----
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP---- 362 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s------~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~---- 362 (608)
+..+ .+...+..++|+ |+++++++ +++|.+||..+++++..+..+
T Consensus 215 --------------------~~~i---~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~ 271 (543)
T 1nir_A 215 --------------------VAEI---KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV 271 (543)
T ss_dssp --------------------EEEE---ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECS
T ss_pred --------------------EEEE---ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCccc
Confidence 2211 134457788886 46888877 799999999999999888642
Q ss_pred -------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE--EeeCccccEEEEEEeCCCCEEEE-EcCCCcEEE
Q 007306 363 -------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVS-SGADAQLCV 430 (608)
Q Consensus 363 -------~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s-~~~d~~i~v 430 (608)
...+..+.++|++ .+++...++.|.+||..+++.+. .+. +...+.++.|+|+|+++++ +..+++|.+
T Consensus 272 ~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v 350 (543)
T 1nir_A 272 DTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAV 350 (543)
T ss_dssp SSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEE
T ss_pred CccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEE
Confidence 2378899999988 77788889999999998876543 333 5567888999999997665 456899999
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCC-CCEEEEE--eCCcEEEEECCC-------CceeeeecCCCCCCC
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIHLLSI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLP 500 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~l~~~--~d~~i~iwd~~~-------~~~~~~~~~~~~~~~ 500 (608)
||+.+++.. .++..+..|+.+....+ ++|+ +..++++ .|++|.+||+.+ +++++++.. |...
T Consensus 351 ~D~~tg~l~-----~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~--~g~~ 422 (543)
T 1nir_A 351 IDSKDRRLS-----ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG--QGGG 422 (543)
T ss_dssp EETTTTEEE-----EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC--SCSC
T ss_pred EECCCCeEE-----EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc--CCCC
Confidence 999986533 32222222111333333 5787 5555555 478999999988 888898875 4677
Q ss_pred eEEEEEecCCCEEEEEE-------cCCeEEEEeCCCCcee-EEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe--
Q 007306 501 ITYATYSCDGKCIYVSC-------KSGHVKVFDTSTLELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-- 570 (608)
Q Consensus 501 v~~~~~s~~~~~l~sg~-------~dg~i~iwd~~~~~~~-~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-- 570 (608)
+..++++|+|++|++++ .+++|.+||+.+++.. ..+...... |-..+..++..+.|+| +|+.+.++.
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~-~g~~~~~s~~~ 499 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA--DLGEGAKRVVQPEYNK-RGDEVWFSVWN 499 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH--CCCSSCCEEEEEEECS-SSSEEEEEEEC
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc--ccCCCCCceEeccCCC-CCCEEEEEeec
Confidence 88899999999999987 3789999999999876 443221100 0012223456999999 788877663
Q ss_pred ---CCCcEEEEeCCCCcccccc
Q 007306 571 ---TNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 571 ---~Dg~v~iW~~~~~~~~~~~ 589 (608)
.|+.|.|||..+++.+-..
T Consensus 500 ~~~~~~~i~v~D~~t~~~~~~i 521 (543)
T 1nir_A 500 GKNDSSALVVVDDKTLKLKAVV 521 (543)
T ss_dssp CTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCCCCeEEEEECCCceEEEee
Confidence 4799999999999875443
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=1.9e-25 Score=228.62 Aligned_cols=288 Identities=11% Similarity=-0.008 Sum_probs=213.4
Q ss_pred eecCCCC-eEEEee----cCC----eEEEeec--cCCCCCCceeeEeecCCCCCCcEEEEEEeeC--------------C
Q 007306 217 TSLPDAD-SAVCAK----SLE----KSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSHS--------------G 271 (608)
Q Consensus 217 ~~s~dg~-~l~~~~----~d~----~i~iWd~--~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~--------------g 271 (608)
.|++.|. .+++|+ .|| ++++||+ ..+ ..+....+.+ |...+..+++++. +
T Consensus 69 ~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 69 AWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPG---TVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp HHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTT---CEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred HHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCC---CEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 5778776 555776 467 8999999 642 2332333433 8888888888762 6
Q ss_pred CEEEEEeCC------CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C
Q 007306 272 DFLVALTQT------ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G 342 (608)
Q Consensus 272 ~~l~s~s~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d 342 (608)
..++.++.+ +.|++||...... .... +|...|.+++|+ |++|++++ +
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~---------------------~~l~---~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQ---------------------FVVH---RSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSC---------------------EEEE---EESSCEEEEEECTTSSEEEEEECT
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCC---------------------EEEe---CCCCcceeeEEcCCCCEEEEEEec
Confidence 677777664 6888888754322 1111 478899999999 88999998 6
Q ss_pred C---cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCCc--EEEEeCCCCceEEEeeCccccEEEEEEeCC
Q 007306 343 G---KISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSS--ILVHCPCTKKTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 343 ~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 415 (608)
+ .|++||+.+++.. .+..+...+.+++|+||| .|+ +++.++. |++||+.+++. ..+..|...+.+++|+||
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTT
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCC
Confidence 4 9999999998875 466778899999999999 676 6666654 99999998876 566678889999999999
Q ss_pred CCEEEEEcC-CC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eC---CcEEEEECCCCce
Q 007306 416 LNVLVSSGA-DA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE---GQIDVYEAPTLNH 488 (608)
Q Consensus 416 ~~~l~s~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d---~~i~iwd~~~~~~ 488 (608)
|++|++++. ++ .|++||+.+++. . ....+. ..+.+++|+|+|++|+++ .+ ..|++||+.+++.
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~~~~------~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNINGGAP------Q-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSSCC------E-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred CCEEEEEECCCCCcEEEEEECCCCCE------E-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 999888876 44 677889887431 1 112233 468899999999999984 43 5899999998876
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEec
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG---HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHP 560 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp 560 (608)
. .+.. + ..+.+++|+|||++|++++.++ .|++||+..+. ...+. +| ...+. +++|+|
T Consensus 348 ~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l~-------~~-~~~v~--~~~~~~ 407 (415)
T 2hqs_A 348 Q-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP-------AT-DGQVK--FPAWSP 407 (415)
T ss_dssp E-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC-------CS-SSEEE--EEEECC
T ss_pred E-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEee-------CC-CCCCc--CCcccc
Confidence 3 3432 2 3899999999999999988877 89999998544 44444 22 33444 999999
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=3.6e-25 Score=244.89 Aligned_cols=320 Identities=11% Similarity=0.083 Sum_probs=227.9
Q ss_pred eeEeecCCCCeEEEeec-CC-----eEEEeeccCCCCCCceeeEeecCCCCC----------------------CcEEEE
Q 007306 214 RESTSLPDADSAVCAKS-LE-----KSVNLKLQLINEPSECRTLLLPDNSFG----------------------GRVVRL 265 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~-d~-----~i~iWd~~~~~~~~~~~~~~l~~~~h~----------------------~~V~~~ 265 (608)
..+.|||||++|++++. |+ .|++||+.+ ++...+ +...++. ..|.++
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLL-VDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEE-ECGGGTC--------------------CCEESCCC
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCC----CceeEc-cchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 34589999999999998 88 899999984 444332 2211122 348899
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCC
Q 007306 266 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG 343 (608)
Q Consensus 266 ~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~ 343 (608)
+|||||++|++++. +.|.+||+.++.. ....... .|...+.+++|+ |++|++++++
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~------------------~~~~~l~---~~~~~~~~~~~SPDG~~la~~~~~ 172 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGK------------------AAVRQLT---HGEGFATDAKLSPKGGFVSFIRGR 172 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCST------------------TSCCBCC---CSSSCEEEEEECTTSSEEEEEETT
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCc------------------ceEEEcc---cCCcccccccCCCCCCEEEEEeCC
Confidence 99999999999887 8898888766510 0111111 467789999999 8899999988
Q ss_pred cEEEEEcCCCceeeEecCCCCC----------------eEEEEEcCCC-eEEEEeCCC----------------------
Q 007306 344 KISIFSLETFQTLATFANPPPI----------------ATYFILLPQD-LFAFGFDDS---------------------- 384 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~----------------v~~~~~~~~~-~l~~~~~d~---------------------- 384 (608)
.|.+||+.+++.......+... +.+++|+||| .|++++.|+
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~ 252 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQR 252 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence 9999999988776655444332 4679999999 888887665
Q ss_pred -----------cEEEEeCCC-CceEEEee--CccccEEEEEEeCCCCEEEEEcC-----CCcEEEEECCCCceeccccee
Q 007306 385 -----------SILVHCPCT-KKTKAKLK--GHQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 385 -----------~i~vwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~~~~~~~~~~~ 445 (608)
.|++||+.+ ++...... .|...+.+++| |||++|++++. +..|++||+.+++.. .
T Consensus 253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-----~ 326 (741)
T 2ecf_A 253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-----V 326 (741)
T ss_dssp CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-----E
T ss_pred cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-----E
Confidence 889999998 87655443 37788999999 99999987654 567999999985432 1
Q ss_pred eeeccCCCCcc---ceEEEEEcCCCCEEEEE-eCCcEEEEECC-CCceeeeecCCCCCCCeEEE-EEecCCCEEEEE-Ec
Q 007306 446 SFQTGLVPETT---IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITYA-TYSCDGKCIYVS-CK 518 (608)
Q Consensus 446 ~~~~~~~~~~~---~v~~v~~sp~~~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~sg-~~ 518 (608)
+...+.. . .+.+++|+|||++++++ .++.++||.+. ++. ...+.. +...+..+ .|+|+|+.|+.. +.
T Consensus 327 -~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~ 400 (741)
T 2ecf_A 327 -LAHETSP--TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGI 400 (741)
T ss_dssp -EEEEECS--SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECS
T ss_pred -EEEcCCC--CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeC
Confidence 1222210 1 34578999999977775 67777777654 344 555543 46778887 599999987654 44
Q ss_pred CC--eEEEEeCCC-CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCc
Q 007306 519 SG--HVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 584 (608)
Q Consensus 519 dg--~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~v~iW~~~~~~ 584 (608)
++ .++||++.. +.....+.. ...++ .++|+| |+++|+....+ +.+.+|+...+.
T Consensus 401 ~~~~~~~l~~~~~~g~~~~~l~~---------~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 401 ESARESQIYAVPLQGGQPQRLSK---------APGMH--SASFAR-NASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp SCTTCBEEEEEETTCCCCEECCC---------SCSEE--EEEECT-TSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred CCCceEEEEEEEcCCCCeeeccc---------CCCce--EEEECC-CCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 55 899999864 544444431 22234 899999 78887766543 478999886543
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.94 E-value=5.7e-25 Score=251.74 Aligned_cols=332 Identities=13% Similarity=0.052 Sum_probs=240.4
Q ss_pred ceeEeecCCCCeEEEeecC------CeEEEeeccCCCCCCceeeEeecCCCCCCcE-------EEEEEeeCCCEEEEEeC
Q 007306 213 SRESTSLPDADSAVCAKSL------EKSVNLKLQLINEPSECRTLLLPDNSFGGRV-------VRLIYSHSGDFLVALTQ 279 (608)
Q Consensus 213 ~~~~~~s~dg~~l~~~~~d------~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V-------~~~~fsp~g~~l~s~s~ 279 (608)
.....|||||++||+++.+ ..|.+|++.+ ++... |. +|...+ .+++|||||+.+++++.
T Consensus 55 v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~----g~~~~--lt--~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~ 126 (1045)
T 1k32_A 55 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN----GEIKR--IT--YFSGKSTGRRMFTDVAGFDPDGNLIISTDA 126 (1045)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT----TEEEE--CC--CCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred ccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC----CCeEE--cc--cCCCcccccccccccccCCCCCEEEEEECC
Confidence 3446899999999998754 3799999874 44444 43 378888 99999999997777765
Q ss_pred C------CcEEEEecCCCcceeeecc----------------------------cceeeEEeeC-CCCeeeeccccCCCC
Q 007306 280 T------ATHKLWKWQSNKQSLEEEN----------------------------VNMESQLYQP-SSKLVMTNDIAADPK 324 (608)
Q Consensus 280 d------g~i~iw~~~~~~~~~~~~~----------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~ 324 (608)
+ ..+.+|++.++........ ......+|.. ..+..... .+|.
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~ 203 (1045)
T 1k32_A 127 MQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMS 203 (1045)
T ss_dssp TSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCS
T ss_pred cCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCC
Confidence 4 3577777766553221000 0112234431 12333332 2699
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCC-CceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 325 DSISCFALR-GSHLFSAS-GGKISIFSLET-FQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 325 ~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
..+.++.|+ +.++++++ ++.+.+|.+.. +.....+..|. .+...+|+||| .++.+ .++.|++||+.... +..+
T Consensus 204 ~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l 280 (1045)
T 1k32_A 204 THVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKI 280 (1045)
T ss_dssp SCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCC-EEEC
T ss_pred CcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceE-eeee
Confidence 999999999 64555666 78999998754 44555565554 45677999999 88887 48999999995443 3355
Q ss_pred eC-----------ccccEEEEEEe-CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCcc-ceEEEEEcCCC
Q 007306 401 KG-----------HQNRITCLAYS-LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT-IVNHIQFHPDQ 467 (608)
Q Consensus 401 ~~-----------~~~~v~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~~ 467 (608)
.+ |...+.+++|+ |||+.+++++ ++.|.+|++.+++. .. ...+. . .+..++|+ ||
T Consensus 281 ~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-----~~--~~~~~---~~~~~~~~~s-dg 348 (1045)
T 1k32_A 281 EIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-----LK--VPEPL---RIRYVRRGGD-TK 348 (1045)
T ss_dssp CCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-----EE--CSCCS---CEEEEEECSS-SE
T ss_pred ccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-----EE--ccCCC---cceEEeeeEc-CC
Confidence 44 34468899999 9999998887 88999999987432 11 22333 4 78899999 99
Q ss_pred CEEEEE-eCCcEE-EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCC
Q 007306 468 IHLLSI-HEGQID-VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 545 (608)
Q Consensus 468 ~~l~~~-~d~~i~-iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g 545 (608)
+.++.+ .++.+. +||+.+++.. .+. .|...+..++|||||++|++++.++.|++||+.+++...... +
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-------~ 418 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-------S 418 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-------C
T ss_pred CeEEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-------C
Confidence 998884 566788 8899776653 343 357889999999999999999999999999999998776654 2
Q ss_pred CcccccccEEEEEecCCCCEEEEEeCCC----------cEEEEeCCCCc
Q 007306 546 TISLELYPLVIAAHPLEPNRIALGLTNG----------RVHVIEPLESE 584 (608)
Q Consensus 546 ~~~~~v~~~~v~~sp~d~~~las~s~Dg----------~v~iW~~~~~~ 584 (608)
| ...+. +++|+| |+++|++++.++ .|++||+.+++
T Consensus 419 ~-~~~v~--~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 419 R-EAMIT--DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp S-SSCCC--CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred C-CCCcc--ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 2 33344 899999 899999887654 99999998876
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.1e-25 Score=226.98 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=204.3
Q ss_pred CCcEEEEEEeeCCC-EEEEEe----CCC----cEEEEec--CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCe
Q 007306 259 GGRVVRLIYSHSGD-FLVALT----QTA----THKLWKW--QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSI 327 (608)
Q Consensus 259 ~~~V~~~~fsp~g~-~l~s~s----~dg----~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 327 (608)
...+....|++.|. ++++|+ .+| .+++||+ .+++.... ..+. +|...+
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~--------~~~~-------------~~~~~~ 120 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ--------NSYK-------------VNKQWL 120 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE--------EEEE-------------ECGGGH
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee--------eEEE-------------cChhHH
Confidence 35677788888875 555776 467 8899988 76664211 0000 233333
Q ss_pred EEEEEe----------------CCEEEEEe-C------CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC
Q 007306 328 SCFALR----------------GSHLFSAS-G------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD 383 (608)
Q Consensus 328 ~~v~~s----------------~~~l~s~~-d------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 383 (608)
..++++ +..++.++ + +.|++||+. +...+.+..|...+.+++|+|+| .|++++.+
T Consensus 121 ~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~ 199 (415)
T 2hqs_A 121 RYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEec
Confidence 333322 44566555 4 699999997 55567777889999999999999 99999887
Q ss_pred C---cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEE-EEcCCCc--EEEEECCCCceecccceeeeeccCCCCccc
Q 007306 384 S---SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ--LCVWDAVGWKKLCSKFLHSFQTGLVPETTI 457 (608)
Q Consensus 384 ~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (608)
+ .|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++. |++||+.+++. . ....|. ..
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~------~-~l~~~~---~~ 268 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI------R-QVTDGR---SN 268 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------E-ECCCCS---SC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE------E-eCcCCC---Cc
Confidence 5 9999999998875 4666888999999999999887 6666654 99999988432 2 223444 57
Q ss_pred eEEEEEcCCCCEEEEE-e-CC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC---CeEEEEeCCCC
Q 007306 458 VNHIQFHPDQIHLLSI-H-EG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---GHVKVFDTSTL 530 (608)
Q Consensus 458 v~~v~~sp~~~~l~~~-~-d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---g~i~iwd~~~~ 530 (608)
+.+++|+|||++|+++ . ++ .|++||+.+++.. .+.. +...+.+++|+|||++|++++.+ +.|++||+.++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 9999999999999884 3 34 6888899877643 3332 36678899999999999988875 58999999998
Q ss_pred ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCc
Q 007306 531 ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG---RVHVIEPLESE 584 (608)
Q Consensus 531 ~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg---~v~iW~~~~~~ 584 (608)
+.. .+. ++ . .+.+++|+| |+.+|++++.|+ .|++|++..+.
T Consensus 346 ~~~-~l~-------~~-~---~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 346 GVQ-VLS-------ST-F---LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CEE-ECC-------CS-S---SCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CEE-Eec-------CC-C---CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECCCCc
Confidence 763 232 22 1 345899999 899999998877 79999987544
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.3e-23 Score=221.71 Aligned_cols=297 Identities=12% Similarity=0.111 Sum_probs=215.8
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeec--cCCCCCCceeeEeecCCCCCCcEEEEEEee----CCCEEEEEeC-CCcEEEE
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKL--QLINEPSECRTLLLPDNSFGGRVVRLIYSH----SGDFLVALTQ-TATHKLW 286 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~--~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp----~g~~l~s~s~-dg~i~iw 286 (608)
..+.|+|||+++++++.|++|++||+ .+ .++.. +++ +...+..++||| ||++|++++. +++|.+|
T Consensus 182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t----~~~~~-~i~---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~ 253 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRDARIDMIDLWAKE----PTKVA-EIK---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 253 (543)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSS----CEEEE-EEE---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred ceEEECCCCCEEEEECCCCeEEEEECcCCC----CcEEE-EEe---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEE
Confidence 34579999999999999999999999 43 33332 232 356789999999 9999999985 8999999
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeee-ccccCCCCCCeEEEEEe--CCE-EEEEe-CCcEEEEEcCCCceee--Ee
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMT-NDIAADPKDSISCFALR--GSH-LFSAS-GGKISIFSLETFQTLA--TF 359 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~s--~~~-l~s~~-d~~i~vwd~~~~~~~~--~~ 359 (608)
|..+.+.... +... +.... ..+ .+...+.++.++ +.. +++.. ++.|.+||+.+++.+. .+
T Consensus 254 D~~t~~~~~~----------i~~~-g~~~~~~~~--~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 254 DGETLEPKQI----------VSTR-GMTVDTQTY--HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp ETTTCCEEEE----------EECC-EECSSSCCE--ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred ecccccccee----------eccc-CcccCcccc--ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 9877765221 1110 00000 000 123478899999 554 45555 8999999998876544 33
Q ss_pred cCCCCCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCceEEEeeC----ccccEEEEEEeCC-CCEEEEEc-CCCcEEEE
Q 007306 360 ANPPPIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLS-LNVLVSSG-ADAQLCVW 431 (608)
Q Consensus 360 ~~~~~~v~~~~~~~~~-~l~~-~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~s~~-~d~~i~vw 431 (608)
.+...+..++|+|+| ++++ +..+++|.+||..+++++..+.. |.+....+ ++|+ +..++++. .|++|.+|
T Consensus 321 -~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~ 398 (543)
T 1nir_A 321 -GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLI 398 (543)
T ss_dssp -ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred -ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEE
Confidence 355667889999999 6654 45688999999999999888764 55444443 5787 66667765 58999999
Q ss_pred ECCCCce--ecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe--------CCcEEEEECCCCcee-eeecC------
Q 007306 432 DAVGWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTLNHT-SQLVP------ 494 (608)
Q Consensus 432 d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--------d~~i~iwd~~~~~~~-~~~~~------ 494 (608)
|+.+... ...+.++ ...+|. +.+..++++|+|++|+++. +++|.+||+.+++.. ..+..
T Consensus 399 d~~~~~~~~~~~~~v~-~l~~~g---~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~ 474 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVA-ELQGQG---GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 474 (543)
T ss_dssp ECCTTTCTTTBTSEEE-EEECSC---SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCC
T ss_pred EeCCCCCchhcCeEEE-EEEcCC---CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhccc
Confidence 9987211 1124455 344554 4677899999999999953 679999999999876 33311
Q ss_pred CCCCCCeEEEEEecCCCEEEEEE-----cCCeEEEEeCCCCceeEEEe
Q 007306 495 DKMDLPITYATYSCDGKCIYVSC-----KSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 495 ~~~~~~v~~~~~s~~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~ 537 (608)
..+...+..+.|+|+|+.++++. .|+.|.|||..+++++.++.
T Consensus 475 ~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 475 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 23477899999999999998763 37999999999999998876
No 133
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.4e-24 Score=237.64 Aligned_cols=320 Identities=13% Similarity=0.079 Sum_probs=216.5
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCC---cEEEEEEeeCCCEEEEEeCC---------CcEE
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQT---------ATHK 284 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~---~V~~~~fsp~g~~l~s~s~d---------g~i~ 284 (608)
.|+|||+++++ +.||+|++||+.+ ++.... +.. |.. .|.+++|||||++|++++.+ +.+.
T Consensus 23 ~~spdg~~~~~-~~dg~i~~~d~~~----g~~~~~-~~~--~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 23 KWISDTEFIYR-EQKGTVRLWNVET----NTSTVL-IEG--KKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGG----CCCEEE-ECT--TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred EEcCCCcEEEE-eCCCCEEEEECCC----CcEEEE-ecc--ccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 69999998776 7899999999985 444432 322 443 49999999999999999875 5566
Q ss_pred EEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEecCC
Q 007306 285 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANP 362 (608)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~ 362 (608)
+||+.+++ ........+|...+..++|+ |+.|++++++.|++||+.+++..+....+
T Consensus 95 ~~d~~~~~---------------------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~ 153 (723)
T 1xfd_A 95 LSKIPHGD---------------------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTG 153 (723)
T ss_dssp EEESSSCC---------------------CEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCC
T ss_pred EEECCCCc---------------------eEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCC
Confidence 66655443 21111112455668899999 88999999999999999998887766654
Q ss_pred CCCe------------------EEEEEcCCC-eEEEEeCCC----------------------------------cEEEE
Q 007306 363 PPIA------------------TYFILLPQD-LFAFGFDDS----------------------------------SILVH 389 (608)
Q Consensus 363 ~~~v------------------~~~~~~~~~-~l~~~~~d~----------------------------------~i~vw 389 (608)
...+ .+++|+||| .|++++.++ .|++|
T Consensus 154 ~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 233 (723)
T 1xfd_A 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (723)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred CCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence 4433 789999999 888877543 79999
Q ss_pred eCCCCceEEEeeCc------cccEEEEEEeCCCCEEEEEcC----CCcEEEEECCCCceecccceeeeeccCCCCccce-
Q 007306 390 CPCTKKTKAKLKGH------QNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV- 458 (608)
Q Consensus 390 d~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v- 458 (608)
|+.+++....+..+ ...+.+++|+|||+++++.+. +..|++||+.+++.. ......+. ..+
T Consensus 234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~-----~~~~~~~~---~~~~ 305 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT-----KKHEDESE---AWLH 305 (723)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE-----EEEEEECS---SCCC
T ss_pred ECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce-----EEEEeccC---CEEe
Confidence 99988865566544 567899999999998876643 357999999885422 11111121 222
Q ss_pred ---EEEEEcCCCCEEEE--E-eCC------cEEEEE-CCCCc--eeeeecCCCCCCCeEE-EEEecCCCEEEEEEcC---
Q 007306 459 ---NHIQFHPDQIHLLS--I-HEG------QIDVYE-APTLN--HTSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS--- 519 (608)
Q Consensus 459 ---~~v~~sp~~~~l~~--~-~d~------~i~iwd-~~~~~--~~~~~~~~~~~~~v~~-~~~s~~~~~l~sg~~d--- 519 (608)
..++|+|||+.|+. + .++ .|++|| ..++. +...+.. +...+.. ++|+|||+.|+..+.+
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 306 RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 37899999997774 3 455 577788 44444 1445542 1344554 6999999999876665
Q ss_pred CeEEEEeCCCCc--eeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC-CC--cEEEEeCCCC
Q 007306 520 GHVKVFDTSTLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NG--RVHVIEPLES 583 (608)
Q Consensus 520 g~i~iwd~~~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg--~v~iW~~~~~ 583 (608)
+.++||++.... ....+... .+| ...+. .++|+| |+++|+.... ++ .+.+++..++
T Consensus 384 ~~~~l~~~~~~~~~~~~~l~~~----~~~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 384 RRRQLYSANTVGNFNRQCLSCD----LVE-NCTYF--SASFSH-SMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp TCCEEEEECSSTTCCCBCSSTT----SSS-SCCCC--EEEECT-TSSEEEEECCSSSSCCEEEEETTTC
T ss_pred cceEEEEEeCCCCCCcceeccc----ccC-CCCeE--EEEECC-CCCEEEEEccCCCCCeEEEEECCCC
Confidence 789999987532 22222210 001 22244 899999 7887776543 22 2344554443
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.93 E-value=5.5e-23 Score=204.82 Aligned_cols=277 Identities=13% Similarity=0.141 Sum_probs=189.7
Q ss_pred eEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC-CcEEEEecC--CCcceeeeccc
Q 007306 224 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT-ATHKLWKWQ--SNKQSLEEENV 300 (608)
Q Consensus 224 ~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d-g~i~iw~~~--~~~~~~~~~~~ 300 (608)
.+++++.|+.|++|++.. .+........ .|...+.+++|+|+|++|++++.+ +.|.+|++. ++...
T Consensus 7 l~~~~~~~~~v~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~------ 75 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNH---EGALTLTQVV--DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------ 75 (343)
T ss_dssp EEEEEGGGTEEEEEEECT---TSCEEEEEEE--ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------
T ss_pred EEEeCCCCCeEEEEEECC---CCcEEEeeeE--ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCcee------
Confidence 344447899999999963 2322222111 267789999999999999999886 999999876 33220
Q ss_pred ceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEc---CCCceeeEecCCCCCeEEEEEcC
Q 007306 301 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSL---ETFQTLATFANPPPIATYFILLP 373 (608)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~---~~~~~~~~~~~~~~~v~~~~~~~ 373 (608)
.+... .....+.+++|+ ++++++++ ++.|.+||+ .+++....+..+ ..+.+++|+|
T Consensus 76 -------------~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 138 (343)
T 1ri6_A 76 -------------FAAES---ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP 138 (343)
T ss_dssp -------------EEEEE---ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT
T ss_pred -------------ecccc---ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC
Confidence 11111 012367889999 77776666 788999999 444455555433 4578899999
Q ss_pred CC-eEEEEe-CCCcEEEEeCCC-CceEE----EeeC-ccccEEEEEEeCCCCEEEEE-cCCCcEEEEECCC--Cceeccc
Q 007306 374 QD-LFAFGF-DDSSILVHCPCT-KKTKA----KLKG-HQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVG--WKKLCSK 442 (608)
Q Consensus 374 ~~-~l~~~~-~d~~i~vwd~~~-~~~~~----~~~~-~~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~--~~~~~~~ 442 (608)
++ .+++++ .++.|.+||+.+ ++... .+.. ....+.+++|+|++++++++ ..++.|.+||+.. ++.....
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe
Confidence 99 777776 899999999987 65432 2222 34578899999999976544 5789999999954 3221111
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECC--C--CceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP--T--LNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~--~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg 516 (608)
.+.....++.. ...+..++|+|+|+++++ + .++.|.+||+. + .+.+..+.. ...+..++|+|+|++|+++
T Consensus 219 ~~~~~~~~~~~-~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 219 TLDMMPENFSD-TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT---ETQPRGFNVDHSGKYLIAA 294 (343)
T ss_dssp EEECSCTTCCS-CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC---SSSCCCEEECTTSSEEEEE
T ss_pred eccccCccccc-cCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC---CCccceEEECCCCCEEEEe
Confidence 22212222110 135678999999998886 4 67899999997 2 344444443 2338899999999999888
Q ss_pred E-cCCeEEEEe--CCCCce
Q 007306 517 C-KSGHVKVFD--TSTLEL 532 (608)
Q Consensus 517 ~-~dg~i~iwd--~~~~~~ 532 (608)
+ .++.|.+|+ ..+++.
T Consensus 295 ~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 295 GQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp CTTTCEEEEEEEETTTTEE
T ss_pred cCCCCeEEEEEEcCCCcee
Confidence 8 579999995 446654
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=3.2e-23 Score=237.21 Aligned_cols=311 Identities=11% Similarity=-0.007 Sum_probs=232.9
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCC---------CCCcEEEEEEe-eCCCEEEEEeCCCcEE
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNS---------FGGRVVRLIYS-HSGDFLVALTQTATHK 284 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~---------h~~~V~~~~fs-p~g~~l~s~s~dg~i~ 284 (608)
...|+|||+.++++ .++.|.+|+.. ...+.. +.... |...+.+++|| |||++|++++ ++.+.
T Consensus 249 ~~~~SpDG~~la~~-~~~~i~~~d~~----~~~l~~--l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~ 320 (1045)
T 1k32_A 249 PRHLNTDGRRILFS-KGGSIYIFNPD----TEKIEK--IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAF 320 (1045)
T ss_dssp EEEEEESSSCEEEE-ETTEEEEECTT----TCCEEE--CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEE
T ss_pred eeeEcCCCCEEEEE-eCCEEEEecCC----ceEeee--eccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEE
Confidence 44799999999998 58999999984 233332 32211 34579999999 9999999887 78888
Q ss_pred EEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCC-CeEEEEEe-CCEEEEEe-CCcEE-EEEcCCCceeeEec
Q 007306 285 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR-GSHLFSAS-GGKIS-IFSLETFQTLATFA 360 (608)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s-~~~l~s~~-d~~i~-vwd~~~~~~~~~~~ 360 (608)
+|+..++.. .... .|.. .+..++|+ |+.+++++ ++.+. +|++.+++... +.
T Consensus 321 ~~~~~~~~~---------------------~~~~---~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l~ 375 (1045)
T 1k32_A 321 IQDVSGTYV---------------------LKVP---EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FE 375 (1045)
T ss_dssp EECTTSSBE---------------------EECS---CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CC
T ss_pred EEcCCCCce---------------------EEcc---CCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE-ec
Confidence 777654432 2111 3556 78889998 77888888 77888 88998776544 44
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC----------cEE
Q 007306 361 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA----------QLC 429 (608)
Q Consensus 361 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----------~i~ 429 (608)
+|...+..++|+||| .|++++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++ .|+
T Consensus 376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~ 455 (1045)
T 1k32_A 376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 455 (1045)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEE
Confidence 788899999999999 999999999999999999998888878999999999999999999887654 899
Q ss_pred EEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce--------------------
Q 007306 430 VWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH-------------------- 488 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~-------------------- 488 (608)
+||+.+++ +. ....|. ..+.+++|+|||++|++ +.++...+|+......
T Consensus 456 l~d~~~g~------~~-~l~~~~---~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (1045)
T 1k32_A 456 VYDMEGRK------IF-AATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP 525 (1045)
T ss_dssp EEETTTTE------EE-ECSCSS---SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred EEECCCCc------EE-EeeCCC---cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence 99998843 22 223344 56888999999999998 4556656665432211
Q ss_pred ---------------------eeeecCCCCCCCeEEEEEecCCCEEEE-------------EEcCCeEEEEeCCCCceeE
Q 007306 489 ---------------------TSQLVPDKMDLPITYATYSCDGKCIYV-------------SCKSGHVKVFDTSTLELRC 534 (608)
Q Consensus 489 ---------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s-------------g~~dg~i~iwd~~~~~~~~ 534 (608)
........+...+..++++|||.++++ ...+..|++||+.+++...
T Consensus 526 ~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~ 605 (1045)
T 1k32_A 526 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 605 (1045)
T ss_dssp GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE
T ss_pred cccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE
Confidence 000111124577899999999987875 1234689999999987543
Q ss_pred EEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 535 QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 535 ~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.. .. +..++|+| |+.+|++++.| .|++|++.+++
T Consensus 606 l~------------~~--v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 606 VK------------NN--LTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EE------------EE--EEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred ee------------cC--cceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 22 11 34889999 89999999877 89999998876
No 136
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=2.5e-23 Score=228.81 Aligned_cols=314 Identities=13% Similarity=0.084 Sum_probs=216.8
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCce--eeEeecCC--------------CCCCcEEEEEEeeCCCEEEEEeCC
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSEC--RTLLLPDN--------------SFGGRVVRLIYSHSGDFLVALTQT 280 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~--~~~~l~~~--------------~h~~~V~~~~fsp~g~~l~s~s~d 280 (608)
.|+ |..+++++.|+ | +||+.++ +. ..+ +... .+...|.+++|||| ++++.+ .+
T Consensus 32 ~w~--g~~~~~~~~~~-i-~~d~~tg----~~~~~~l-~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~ 100 (706)
T 2z3z_A 32 QWM--GDNYVFIEGDD-L-VFNKANG----KSAQTTR-FSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQ 100 (706)
T ss_dssp EEE--TTEEEEEETTE-E-EEEC-----------CEE-EEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ET
T ss_pred cCc--CCeEEEEeCCc-E-EEECCCC----cEeeEEe-echhHhhhhccchhccccccccCceeEEECCC-CeEEEE-EC
Confidence 466 66777777788 8 9999853 22 221 1000 01257999999999 656555 45
Q ss_pred CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCC-----C
Q 007306 281 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-----F 353 (608)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~-----~ 353 (608)
+.+.+||+.+++. .... .+...+.+++|+ |+.|+++.++.|++||+.+ +
T Consensus 101 ~~i~~~d~~~~~~---------------------~~l~---~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 101 GGLVGFDMLARKV---------------------TYLF---DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp TEEEEEETTTTEE---------------------EEEE---CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCC
T ss_pred CEEEEEECCCCce---------------------EEcc---CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCC
Confidence 8999888765543 1111 355678889999 8899987799999999998 7
Q ss_pred ceeeEecCCCCC--------------eEEEEEcCCC-eEEEEe---------------------------------CCCc
Q 007306 354 QTLATFANPPPI--------------ATYFILLPQD-LFAFGF---------------------------------DDSS 385 (608)
Q Consensus 354 ~~~~~~~~~~~~--------------v~~~~~~~~~-~l~~~~---------------------------------~d~~ 385 (608)
+.......+... +.+++|+||| .|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 776555444332 4789999999 888887 3468
Q ss_pred EEEEeCCCCceEEEee--CccccEEEEEEeCCCCEEEEEcCCC-----cEEEEECCCCceecccceeeeeccCCCCccce
Q 007306 386 ILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV 458 (608)
Q Consensus 386 i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 458 (608)
|++||+.+++...... .|...+.+++|+|||+.|++++.++ .|++||+.+++.. ..+. ...+......+
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~--~~~~--~~~~~~~~~~~ 312 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV--RTLF--VETDKHYVEPL 312 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE--EEEE--EEECSSCCCCC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee--eEEE--EccCCCeECcc
Confidence 9999999987655442 4667899999999999999887775 8999999986211 1111 11111000124
Q ss_pred EEEEEcC--CCCEEEEE-eCCcEEEEECC-CCceeeeecCCCCCCCeEE-EEEecCCCEEEEEEcC-C----eEEEEeCC
Q 007306 459 NHIQFHP--DQIHLLSI-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVSCKS-G----HVKVFDTS 528 (608)
Q Consensus 459 ~~v~~sp--~~~~l~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~sg~~d-g----~i~iwd~~ 528 (608)
.+++|+| ||++++++ .++.+++|++. ++..+..+.. +...+.. ++|+|+|+.|+.++.+ + .|+.||..
T Consensus 313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp SCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred CCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 5789999 99988875 67888888875 5666666654 3666776 7999999988766554 4 67888888
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCc
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESE 584 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~v~iW~~~~~~ 584 (608)
+++. ..+. + ...+. +++|+| |+++++..+.+ +.|++||+.+++
T Consensus 391 ~~~~-~~l~--------~-~~~~~--~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 391 GGKT-KDLT--------P-ESGMH--RTQLSP-DGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CCCC-EESC--------C-SSSEE--EEEECT-TSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCc-eecc--------C-CCceE--EEEECC-CCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7763 3332 1 22244 899999 78888776543 569999998876
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=3.2e-22 Score=198.40 Aligned_cols=284 Identities=13% Similarity=0.065 Sum_probs=198.4
Q ss_pred EEeeCCCE-EEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-
Q 007306 266 IYSHSGDF-LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS- 341 (608)
Q Consensus 266 ~fsp~g~~-l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~- 341 (608)
.|.+++++ +++.+.++.|.+||..+++. ..... .+...+ +++|+ ++++++++
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~--~~~~~~-~~~~s~dg~~l~~~~~ 59 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------LNQIT--LGYDFV-DTAITSDCSNVVVTSD 59 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE---------------------EEEEE--CCCCEE-EEEECSSSCEEEEEES
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce---------------------eeeEE--ccCCcc-eEEEcCCCCEEEEEeC
Confidence 46666665 56677789999888776654 11111 234455 89999 77666665
Q ss_pred -CCcEEEEEcCCCce-eeEecCCCCCeEEEEEcCCC-eEEEEeCCC---cEEEEeCCCCceEEEeeCccccEEEEEEeCC
Q 007306 342 -GGKISIFSLETFQT-LATFANPPPIATYFILLPQD-LFAFGFDDS---SILVHCPCTKKTKAKLKGHQNRITCLAYSLS 415 (608)
Q Consensus 342 -d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 415 (608)
++.|.+||+.+++. ...+..+..+..+++|+|++ +++++..++ .|.+||+.+++.+..+.. ...+.+++|+|+
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spd 138 (331)
T 3u4y_A 60 FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPN 138 (331)
T ss_dssp TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTT
T ss_pred CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCC
Confidence 78999999999987 77777666666559999999 777655553 899999999998887764 345789999999
Q ss_pred CCEEEE-EcCCCc-EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCce---
Q 007306 416 LNVLVS-SGADAQ-LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH--- 488 (608)
Q Consensus 416 ~~~l~s-~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~--- 488 (608)
|+++++ ...++. |.+|++............ ..... .....++|+|+|+++++ + .++.|++||+.+++.
T Consensus 139 g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~-~~~~~----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~ 213 (331)
T 3u4y_A 139 GNGLILIDRSSANTVRRFKIDADGVLFDTGQE-FISGG----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213 (331)
T ss_dssp SSCEEEEEETTTTEEEEEEECTTCCEEEEEEE-EECSS----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEE
T ss_pred CCEEEEEecCCCceEEEEEECCCCcEeecCCc-cccCC----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccce
Confidence 985554 455688 999999763321111111 11111 35789999999997776 4 578999999999888
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCce--eEEEeceeeccCCCcccccc-cEEEEEecCCCC
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLEL--RCQINLTAYAQPGTISLELY-PLVIAAHPLEPN 564 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~--~~~~~~~~~~~~g~~~~~v~-~~~v~~sp~d~~ 564 (608)
+..+.. ...+..++|+|||+++++++ .++.|.+||+.+++. +..+...... . ..... ...++|+| |+.
T Consensus 214 ~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~sp-dg~ 285 (331)
T 3u4y_A 214 LNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI--D--PRPLFGANQMALNK-TET 285 (331)
T ss_dssp EEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC--C--CGGGTTCCCEEECT-TSS
T ss_pred eeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc--C--CCCcccccceEECC-CCC
Confidence 776653 46678899999999877665 468899999999887 3322211000 0 11111 13689999 788
Q ss_pred EEEEEe-CCCcEEEEeCCCCcccc
Q 007306 565 RIALGL-TNGRVHVIEPLESEVEW 587 (608)
Q Consensus 565 ~las~s-~Dg~v~iW~~~~~~~~~ 587 (608)
+|++++ .++.|.+|++.+....+
T Consensus 286 ~l~v~~~~~~~v~v~d~~~~~~~~ 309 (331)
T 3u4y_A 286 KLFISANISRELKVFTISGKVVGY 309 (331)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEE
T ss_pred EEEEecCCCCcEEEEEecCCcccc
Confidence 775554 56799999998866543
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=6.8e-22 Score=197.86 Aligned_cols=270 Identities=13% Similarity=0.085 Sum_probs=204.1
Q ss_pred CCcEEEEEEeeCCCEEEEEeC-------CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQ-------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 331 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (608)
...+..++|+|+|+++++++. ++.|.+||..+++. ..... ....+..++
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------~~~~~---~~~~~~~~~ 95 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------TQAIH---NDLKPFGAT 95 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------EEEEE---ESSCCCSEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------EEEEe---cCCCcceEE
Confidence 557889999999999988875 45787777665543 22111 223466788
Q ss_pred Ee--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCC---------eEEEEEcCCC-eEEEEe--CCCcEEEEeCCCCc
Q 007306 332 LR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPI---------ATYFILLPQD-LFAFGF--DDSSILVHCPCTKK 395 (608)
Q Consensus 332 ~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~-~l~~~~--~d~~i~vwd~~~~~ 395 (608)
|+ +++++.++ ++.|.+||..+++.+..+..+... +.+++|+|++ .+++++ .++.|.+||+.+++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc
Confidence 88 67665555 699999999999998888754422 6889999999 666655 47899999999999
Q ss_pred eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--
Q 007306 396 TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-- 473 (608)
Q Consensus 396 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-- 473 (608)
.+..+..+...+.+++|+|+|+++++++.++.|.+||+.+++........ ..++. ..+..++|+|+|++++++
T Consensus 176 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~---~~~~~~~~s~dg~~l~~~~~ 250 (353)
T 3vgz_A 176 LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL--DDGKE---HFFINISLDTARQRAFITDS 250 (353)
T ss_dssp EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC--CSSSC---CCEEEEEEETTTTEEEEEES
T ss_pred eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC--CCCCC---cccceEEECCCCCEEEEEeC
Confidence 98888756666889999999999999999999999999986533221111 11222 467889999999988874
Q ss_pred eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccc
Q 007306 474 HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELY 552 (608)
Q Consensus 474 ~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~ 552 (608)
.++.|.+||..+++.+..+..+. ...++|+|+|+++++++ .++.|.+||..+++.+..+... . .
T Consensus 251 ~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~---~ 315 (353)
T 3vgz_A 251 KAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------T---H 315 (353)
T ss_dssp SSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--------S---E
T ss_pred CCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--------C---C
Confidence 45899999999999888876532 25689999999776665 6899999999999988776531 1 2
Q ss_pred cEEEEEecCCCCEEEEEeCCC
Q 007306 553 PLVIAAHPLEPNRIALGLTNG 573 (608)
Q Consensus 553 ~~~v~~sp~d~~~las~s~Dg 573 (608)
+.+++|+| |+++|+.+..++
T Consensus 316 ~~~~~~s~-dg~~l~v~~~~~ 335 (353)
T 3vgz_A 316 PNSLALSA-DGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEECT-TSCEEEEEEECC
T ss_pred CCeEEEcC-CCCEEEEEEccc
Confidence 45899999 788776666553
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=5.3e-23 Score=227.50 Aligned_cols=301 Identities=10% Similarity=0.063 Sum_probs=206.2
Q ss_pred CCcEEEEEEeeCCCEEEEEeC-CC-----cEEEEecCCCcceeeecccceee--EEeeCCCCeeeeccccCCCCCCeEEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQ-TA-----THKLWKWQSNKQSLEEENVNMES--QLYQPSSKLVMTNDIAADPKDSISCF 330 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~-dg-----~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~v 330 (608)
...|.+++|||||++|++++. |+ .|.+||+.+++...........+ ..+............. .....|.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRI-AAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhh-ccccCccee
Confidence 567999999999999999998 88 89999988776422100000000 0000000000000000 001347889
Q ss_pred EEe--CCEEEEEeCCcEEEEEcCCCc--eeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccc
Q 007306 331 ALR--GSHLFSASGGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN 405 (608)
Q Consensus 331 ~~s--~~~l~s~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 405 (608)
+|+ |++|++++++.|.+||+.++. ....+..+...+.+++|+||| .|++++ ++.|++||+.+++.......+..
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred EECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 999 889999999999999999873 445566778889999999999 888887 56999999998877655544433
Q ss_pred c----------------EEEEEEeCCCCEEEEEcCCC---------------------------------cEEEEECCC-
Q 007306 406 R----------------ITCLAYSLSLNVLVSSGADA---------------------------------QLCVWDAVG- 435 (608)
Q Consensus 406 ~----------------v~~~~~~~~~~~l~s~~~d~---------------------------------~i~vwd~~~- 435 (608)
. +.+++|+|||++|++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47799999999999987765 788999887
Q ss_pred CceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee-----CCcEEEEECCCCceeeeecCCCCCC---CeEEEEE
Q 007306 436 WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-----EGQIDVYEAPTLNHTSQLVPDKMDL---PITYATY 506 (608)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~-----d~~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~ 506 (608)
++.. .+. ....+. ..+.+++| |||++|++ +. +..|++||+.+++....+... ... .+..++|
T Consensus 274 ~~~~---~~~-~~~~~~---~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 274 AQTQ---WID-LGKEQD---IYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-SPTWVPLHNSLRF 344 (741)
T ss_dssp CCCE---EEC-CCSCSS---EEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-CSSCCCCCSCCEE
T ss_pred CceE---Eec-CCCCcc---eEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-CCCcCCcCCceEE
Confidence 5521 111 111344 67899999 99999997 33 457999999998876665432 122 4568899
Q ss_pred ecCCCEEEEEEcCCeEEEEeCC-CCceeEEEeceeeccCCCcccccccEEE-EEecCCCCEEE-EEeCCC--cEEEEeCC
Q 007306 507 SCDGKCIYVSCKSGHVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIA-LGLTNG--RVHVIEPL 581 (608)
Q Consensus 507 s~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v-~~sp~d~~~la-s~s~Dg--~v~iW~~~ 581 (608)
+|||+++++++.||.++||.+. +++ ...+. ++ ... +..+ +|+| |++.|+ +++.|+ .++||++.
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~-------~~-~~~--v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALT-------HG-NWS--VDELLAVDE-KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESC-------CS-SSC--EEEEEEEET-TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeee-------ec-ceE--EEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEE
Confidence 9999999999999988888765 344 44443 22 222 3366 5999 677665 555555 89999986
Q ss_pred C
Q 007306 582 E 582 (608)
Q Consensus 582 ~ 582 (608)
.
T Consensus 413 ~ 413 (741)
T 2ecf_A 413 L 413 (741)
T ss_dssp T
T ss_pred c
Confidence 4
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=1.4e-22 Score=201.35 Aligned_cols=269 Identities=12% Similarity=0.042 Sum_probs=198.6
Q ss_pred CEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCC-CeEEEEEe--CCEEEEEe--CCcEE
Q 007306 272 DFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD-SISCFALR--GSHLFSAS--GGKIS 346 (608)
Q Consensus 272 ~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~s--~~~l~s~~--d~~i~ 346 (608)
+++++++.++.|.+||..+++. ...... ++.. .+..++|+ ++.++.++ ++.|.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 59 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------DKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------EEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEE
Confidence 4789999999999888766653 111110 1222 47788999 66665544 78999
Q ss_pred EEEcCCCceeeEecCCC-----CCeEEEEEcCCC-eEEEEe------------CCCcEEEEeCCCCceEEEeeCccccEE
Q 007306 347 IFSLETFQTLATFANPP-----PIATYFILLPQD-LFAFGF------------DDSSILVHCPCTKKTKAKLKGHQNRIT 408 (608)
Q Consensus 347 vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~-~l~~~~------------~d~~i~vwd~~~~~~~~~~~~~~~~v~ 408 (608)
+||+.+++.+..+.... ..+.+++|+|+| .++++. .++.|.+||+.+++.+..+.. ...+.
T Consensus 60 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 138 (337)
T 1pby_B 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQIT 138 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCC
T ss_pred EEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcc
Confidence 99999999887776321 256689999999 887775 579999999999988877764 45678
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCC----------
Q 007306 409 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEG---------- 476 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~---------- 476 (608)
+++|+|+|++++++ ++.|.+||+.+++.. ..+..+..+ . .+.|+|+++.+++ + .++
T Consensus 139 ~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~-----~~~~~~~~~--~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 139 MLAWARDGSKLYGL--GRDLHVMDPEAGTLV-----EDKPIQSWE--A---ETYAQPDVLAVWNQHESSGVMATPFYTAR 206 (337)
T ss_dssp CEEECTTSSCEEEE--SSSEEEEETTTTEEE-----EEECSTTTT--T---TTBCCCBCCCCCCCCTTTTEEEEEEEEEB
T ss_pred eeEECCCCCEEEEe--CCeEEEEECCCCcEe-----eeeeccccC--C---CceeCCCccEEeeeccCCCceeeeeeccc
Confidence 89999999988887 689999999985432 212222210 1 2368899887765 2 222
Q ss_pred -------------cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeecc
Q 007306 477 -------------QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 543 (608)
Q Consensus 477 -------------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 543 (608)
.|.+||+.+++.. .+....+...+.+++|+|||++++++ ++.|++||+.+++.+..+..
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~----- 278 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----- 278 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----
T ss_pred cccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-----
Confidence 4789999988875 43333346778899999999999988 79999999999988776652
Q ss_pred CCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 544 PGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 544 ~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
...+. +++|+| |+++|++++.|+.|++||+.+++......
T Consensus 279 ----~~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 279 ----PHSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ----SSCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ----CCcee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 12233 899999 78999999999999999999987654443
No 141
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=6.6e-22 Score=196.45 Aligned_cols=276 Identities=12% Similarity=0.078 Sum_probs=200.9
Q ss_pred CeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCC-cEEEEEEeeCCCEEEE-EeCCCcEEEEecCCCcceeeeccc
Q 007306 223 DSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-RVVRLIYSHSGDFLVA-LTQTATHKLWKWQSNKQSLEEENV 300 (608)
Q Consensus 223 ~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~-~V~~~~fsp~g~~l~s-~s~dg~i~iw~~~~~~~~~~~~~~ 300 (608)
+++++++.++.|.+||..+ ++.... +.. ++.. .+.+++|+|+|++++. ++.++.|.+||..+++....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~----~~~~~~-~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---- 71 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK----MAVDKV-ITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR---- 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTT----TEEEEE-EEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE----
T ss_pred cEEEEcCCCCeEEEEECCC----CcEEEE-EEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee----
Confidence 4788999999999999974 333322 211 1222 5889999999987655 45578999998877654111
Q ss_pred ceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-------------CCcEEEEEcCCCceeeEecCCCCC
Q 007306 301 NMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-------------GGKISIFSLETFQTLATFANPPPI 365 (608)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-------------d~~i~vwd~~~~~~~~~~~~~~~~ 365 (608)
+...... .|...+.+++|+ ++++++++ ++.|.+||+.+++.+..+.. ...
T Consensus 72 ------~~~~~~~--------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~ 136 (337)
T 1pby_B 72 ------IDLSTPE--------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ 136 (337)
T ss_dssp ------EECCBTT--------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred ------EEcCCcc--------cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC
Confidence 1100000 012256678999 77888774 58999999999988877764 445
Q ss_pred eEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC------------------
Q 007306 366 ATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA------------------ 426 (608)
Q Consensus 366 v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------------------ 426 (608)
+.+++|+|++ .++++ ++.|.+||+.+++....+..+.. ...+.|+|+++.++..+.++
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTS
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccc
Confidence 7788999999 77777 68999999999988877765431 11237899988765544332
Q ss_pred ------cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCC
Q 007306 427 ------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLP 500 (608)
Q Consensus 427 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 500 (608)
.|.+||+.+++.. .+. ...+. ..+.+++|+|+|++++++ ++.|++||+.+++.+..+.. ...
T Consensus 214 ~~~~~~~v~~~d~~~~~~~---~~~--~~~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~ 281 (337)
T 1pby_B 214 PTAYRTGLLTMDLETGEMA---MRE--VRIMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHS 281 (337)
T ss_dssp GGGEEEEEEEEETTTCCEE---EEE--EEECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSC
T ss_pred ccccccceEEEeCCCCCce---Eee--cCCCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCc
Confidence 4689999886532 111 12232 467899999999999988 79999999999988877754 356
Q ss_pred eEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 501 ITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 501 v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 282 ~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 282 YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp CCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred eeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 78999999999999999999999999999998887764
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.1e-21 Score=192.50 Aligned_cols=276 Identities=10% Similarity=0.038 Sum_probs=190.4
Q ss_pred ecCCCCe-EEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC-CCcEEEEecCCCccee
Q 007306 218 SLPDADS-AVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSL 295 (608)
Q Consensus 218 ~s~dg~~-l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~~ 295 (608)
|.+++.. +++.+.++.|.+||..+ +++... +.. +...+ +++|+|+|+++++++. ++.|.+||..+++..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~----~~~~~~-~~~--~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~- 75 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDT----LEILNQ-ITL--GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK- 75 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTT----CCEEEE-EEC--CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcc----cceeee-EEc--cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-
Confidence 5566554 67778899999999984 444332 222 45566 9999999998777766 889998887665430
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCC----cEEEEEcCCCceeeEecCCCCCeEEE
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGG----KISIFSLETFQTLATFANPPPIATYF 369 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~ 369 (608)
..... .+..+..+++|+ +++++++.++ .|.+||+.+++.+..+..+ ....++
T Consensus 76 -------------------~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 76 -------------------VVAIQ--EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGI 133 (331)
T ss_dssp -------------------EEEEE--ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEE
T ss_pred -------------------EEecc--cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccce
Confidence 11110 244455558999 7888855533 8999999999988887654 456899
Q ss_pred EEcCCC-eEEE-EeCCCc-EEEEeCCCCceE----EEeeCccccEEEEEEeCCCCEE-EEEcCCCcEEEEECCCCceecc
Q 007306 370 ILLPQD-LFAF-GFDDSS-ILVHCPCTKKTK----AKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVGWKKLCS 441 (608)
Q Consensus 370 ~~~~~~-~l~~-~~~d~~-i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~ 441 (608)
+|+|+| .+++ +..++. |.+|++.....+ .........+..++|+|+|+++ +++..++.|.+||+.+++..
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-- 211 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-- 211 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC--
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc--
Confidence 999999 5554 455578 999998764332 1112344568999999999965 45556899999999885431
Q ss_pred cceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCce--eeeecCC--CCC---CCeEEEEEecCCCE
Q 007306 442 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH--TSQLVPD--KMD---LPITYATYSCDGKC 512 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~~--~~~~~~~--~~~---~~v~~~~~s~~~~~ 512 (608)
..+..+..+ ..+..++|+|+|++++++ .++.|.+||..+++. +..+... .+. .....++|+|||++
T Consensus 212 ~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 286 (331)
T 3u4y_A 212 TLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETK 286 (331)
T ss_dssp EEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSE
T ss_pred ceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCE
Confidence 113323322 356789999999988774 567899999998877 3333221 011 22355899999999
Q ss_pred EEEEEc-CCeEEEEeCCCCc
Q 007306 513 IYVSCK-SGHVKVFDTSTLE 531 (608)
Q Consensus 513 l~sg~~-dg~i~iwd~~~~~ 531 (608)
|++++. ++.|.+||+....
T Consensus 287 l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 287 LFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEETTTTEEEEEETTSCE
T ss_pred EEEecCCCCcEEEEEecCCc
Confidence 876665 5799999998755
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.1e-21 Score=195.35 Aligned_cols=269 Identities=13% Similarity=0.082 Sum_probs=182.5
Q ss_pred EEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C-CcEEEEE
Q 007306 274 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G-GKISIFS 349 (608)
Q Consensus 274 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d-~~i~vwd 349 (608)
+++++.|+.|.+|++..... ....... .+...+.+++|+ +++|++++ + +.|.+|+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~------------------~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGA------------------LTLTQVV---DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSC------------------EEEEEEE---ECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EEeCCCCCeEEEEEECCCCc------------------EEEeeeE---ecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 34447799999998753211 0011111 266778889999 78888888 5 8999999
Q ss_pred cC--CCc--eeeEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCC---CCceEEEeeCccccEEEEEEeCCCCEEE
Q 007306 350 LE--TFQ--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC---TKKTKAKLKGHQNRITCLAYSLSLNVLV 420 (608)
Q Consensus 350 ~~--~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 420 (608)
+. +++ .+..+..+. .+.+++|+|++ .+++++ .++.|.+||+. +++....+..+ ..+.+++|+|+|++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 67 IAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLW 144 (343)
T ss_dssp ECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEE
T ss_pred ecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEE
Confidence 97 554 334454434 77899999999 676655 48899999994 33445555433 4588999999999887
Q ss_pred EEc-CCCcEEEEECCC-CceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCC--Cce--eeee
Q 007306 421 SSG-ADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQL 492 (608)
Q Consensus 421 s~~-~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~--~~~--~~~~ 492 (608)
+++ .++.|.+||+.+ ++........ ...... ..+..++|+|+++++++ + .++.|.+||+.. ++. ...+
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHLVAQDPAE-VTTVEG---AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEE-EECSTT---CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred EecCCCCEEEEEEecCCCceeeecccc-cccCCC---CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence 776 899999999987 4321111001 111111 46789999999998876 4 678999999953 432 2222
Q ss_pred cC-C-C--CCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCC--CCc--eeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 493 VP-D-K--MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTS--TLE--LRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 493 ~~-~-~--~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~--~~~--~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
.. . . ....+..++|+|+|++|+++. .++.|++|++. ++. .+..+.. + .. +..++|+| ++
T Consensus 221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~------~--~~---~~~~~~s~-dg 288 (343)
T 1ri6_A 221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT------E--TQ---PRGFNVDH-SG 288 (343)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC------S--SS---CCCEEECT-TS
T ss_pred cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC------C--Cc---cceEEECC-CC
Confidence 21 1 1 134677899999999888554 78999999998 332 2222221 1 22 34899999 78
Q ss_pred CEEEEEe-CCCcEEEEeCC
Q 007306 564 NRIALGL-TNGRVHVIEPL 581 (608)
Q Consensus 564 ~~las~s-~Dg~v~iW~~~ 581 (608)
++|++++ .|+.|.+|++.
T Consensus 289 ~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 289 KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEECTTTCEEEEEEEE
T ss_pred CEEEEecCCCCeEEEEEEc
Confidence 8888877 68999999554
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=9e-23 Score=225.01 Aligned_cols=282 Identities=13% Similarity=0.100 Sum_probs=195.9
Q ss_pred CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCC---CeEEEEEe--C
Q 007306 260 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKD---SISCFALR--G 334 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~s--~ 334 (608)
..+.+++|||||+++++ +.||+|++||..+++... +.+ +|.. .|.+++|+ |
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~----------~~~-------------~~~~~~~~v~~~~~SpDg 72 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV----------LIE-------------GKKIESLRAIRYEISPDR 72 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE----------EEC-------------TTTTTTTTCSEEEECTTS
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE----------Eec-------------cccccccccceEEECCCC
Confidence 34678899999997766 789999999887665411 111 2333 48999999 8
Q ss_pred CEEEEEe-C---------CcEEEEEcCCCceeeEec---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 335 SHLFSAS-G---------GKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 335 ~~l~s~~-d---------~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
++|++++ + +.+.+||+.+++. ..+. .+...+..++|+||| .|+.++. +.|++||+.+++.....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEe
Confidence 8999887 4 6788999998876 3333 344458889999999 8888875 79999999998877666
Q ss_pred eCccccE------------------EEEEEeCCCCEEEEEcCCC----------------------------------cE
Q 007306 401 KGHQNRI------------------TCLAYSLSLNVLVSSGADA----------------------------------QL 428 (608)
Q Consensus 401 ~~~~~~v------------------~~~~~~~~~~~l~s~~~d~----------------------------------~i 428 (608)
..+...+ .+++|+|||+.|++++.|+ .|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 5544333 7899999999999887553 78
Q ss_pred EEEECCCCceeccccee--eeeccCCCCccceEEEEEcCCCCEEEEE-eC----CcEEEEECCCCceeeeecCCCCCCCe
Q 007306 429 CVWDAVGWKKLCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLSI-HE----GQIDVYEAPTLNHTSQLVPDKMDLPI 501 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~v 501 (608)
++||+.+++... .+. .....+. ..+.+++|+|||+++++. .. ..|++||+.+++....+... +...+
T Consensus 231 ~~~d~~~~~~~~--~l~~~~~~~~~~---~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~ 304 (723)
T 1xfd_A 231 HVIGLNGPTHDL--EMMPPDDPRMRE---YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWL 304 (723)
T ss_dssp EEEESSSSCCCE--ECCCCCCGGGSS---EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCC
T ss_pred EEEECCCCceeE--EeeCCccCCCcc---ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEE
Confidence 999998754211 111 0011123 578999999999988763 32 46999999998876555332 23333
Q ss_pred ----EEEEEecCCCEEEE--EEcCC------eEEEEe-CCCCce--eEEEeceeeccCCCcccccccEEEEEecCCCCEE
Q 007306 502 ----TYATYSCDGKCIYV--SCKSG------HVKVFD-TSTLEL--RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 566 (608)
Q Consensus 502 ----~~~~~s~~~~~l~s--g~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 566 (608)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+.. |+ .. +. ..++|+| |++.|
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~------~~-~~-~~-~~~~~sp-dg~~l 374 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS------GD-WD-VT-KILAYDE-KGNKI 374 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC------SS-SC-EE-EEEEEET-TTTEE
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec------CC-eE-EE-eeeEEcC-CCCEE
Confidence 37899999997775 44566 577787 344441 333321 21 11 11 1368999 78888
Q ss_pred EEEeCC---CcEEEEeCCCC
Q 007306 567 ALGLTN---GRVHVIEPLES 583 (608)
Q Consensus 567 as~s~D---g~v~iW~~~~~ 583 (608)
+..+.+ +.++||++...
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEESSSCTTCCEEEEECSS
T ss_pred EEEEcCCCCcceEEEEEeCC
Confidence 766655 78999998753
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.4e-21 Score=192.71 Aligned_cols=269 Identities=11% Similarity=0.024 Sum_probs=198.0
Q ss_pred EeecCCCCeEEEeec-------CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC-CCcEEEEe
Q 007306 216 STSLPDADSAVCAKS-------LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ-TATHKLWK 287 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~-------d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~ 287 (608)
+.++|||+++++++. ++.|.+||..+ .+.... ++ ....+..++|+|+|++++.++. ++.|.+||
T Consensus 46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~-~~---~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVT----LEVTQA-IH---NDLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EEEETTTTEEEEEECCCTTTEESEEEEEECTTT----CCEEEE-EE---ESSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC----CeEEEE-Ee---cCCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 479999999988874 56899999974 333321 21 2345788999999996665544 78999998
Q ss_pred cCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCceeeEecCC
Q 007306 288 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLATFANP 362 (608)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~---d~~i~vwd~~~~~~~~~~~~~ 362 (608)
..+++... .+....+.... ......+.+++|+ ++++++++ ++.|.+||+.+++.+..+..+
T Consensus 118 ~~~~~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 183 (353)
T 3vgz_A 118 AKTGEVKG----------RLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT 183 (353)
T ss_dssp TTTCCEEE----------EEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC
T ss_pred CCCCeeEE----------EEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC
Confidence 87765411 11110000000 0011236789999 67666655 678999999999999888766
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeC----ccccEEEEEEeCCCCEEEEEcC-CCcEEEEECCCC
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKG----HQNRITCLAYSLSLNVLVSSGA-DAQLCVWDAVGW 436 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~ 436 (608)
...+.+++|+|++ .+++++.++.|.+||+.+++....+.. +...+.+++|+|+++++++++. ++.|.+||..++
T Consensus 184 ~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 184 GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 6668899999999 899999999999999999988877764 4556889999999997766655 599999999885
Q ss_pred ceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEE
Q 007306 437 KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIY 514 (608)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 514 (608)
+.. ..+..+ ....++|+|+|+++++ + .++.|.+||..+++.+..+.. ...+.+++|+|||++|+
T Consensus 264 ~~~-----~~~~~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 264 NIL-----AKVAAP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT---PTHPNSLALSADGKTLY 329 (353)
T ss_dssp CEE-----EEEECS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC---CSEEEEEEECTTSCEEE
T ss_pred cEE-----EEEEcC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec---CCCCCeEEEcCCCCEEE
Confidence 432 212222 1246899999997776 4 579999999999998888764 45789999999999888
Q ss_pred EEEcCC
Q 007306 515 VSCKSG 520 (608)
Q Consensus 515 sg~~dg 520 (608)
++..++
T Consensus 330 v~~~~~ 335 (353)
T 3vgz_A 330 VSVKQK 335 (353)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 777664
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.9e-21 Score=189.04 Aligned_cols=252 Identities=10% Similarity=-0.030 Sum_probs=180.6
Q ss_pred EeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCC-CcceeeecccceeeE
Q 007306 227 CAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS-NKQSLEEENVNMESQ 305 (608)
Q Consensus 227 ~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~-~~~~~~~~~~~~~~~ 305 (608)
.++.|++|++||+.+ ++...+ .. |...|.+++|+|+|++|++++ ++.|.+||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~----~~~~~~--~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~------------ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT----RKMRVV--WQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP------------ 75 (297)
T ss_dssp -CCCCEEEEEEETTT----TEEEEE--EE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC------------
T ss_pred CCCcceeEEEEeCCC----Cceeee--cc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc------------
Confidence 346789999999974 444432 22 788999999999999999876 78999888876 543
Q ss_pred EeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C--CcEEEE--EcCCCceeeEecCCCCCeEEEEEcCCC-eE
Q 007306 306 LYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--GKISIF--SLETFQTLATFANPPPIATYFILLPQD-LF 377 (608)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d--~~i~vw--d~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 377 (608)
... ....+...+.+++|+ +++|++++ + +...+| ++.+++ ...+..+. .+.+++|+|++ .|
T Consensus 76 ---------~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l 143 (297)
T 2ojh_A 76 ---------EKV-DTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSF 143 (297)
T ss_dssp ---------EEC-CCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEE
T ss_pred ---------eEe-ccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEE
Confidence 111 111234678899999 88888887 3 345555 445444 34444333 48899999999 66
Q ss_pred E-EEeCCCcEEEEeC--CCCceEEEeeCccccEEEEEEeCCCCEEEEEc-CCCcEEEEECCCCceecccceeeeeccCCC
Q 007306 378 A-FGFDDSSILVHCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVP 453 (608)
Q Consensus 378 ~-~~~~d~~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 453 (608)
+ +++.++.+.+|++ .+++ ...+..+...+.+++|+|+++.+++++ .++.+.+|++.... ..+. ....+.
T Consensus 144 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~----~~~~-~~~~~~- 216 (297)
T 2ojh_A 144 TYCGIRDQVFDIYSMDIDSGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG----SSVE-RITDSA- 216 (297)
T ss_dssp EEEEEETTEEEEEEEETTTCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----SCEE-ECCCCS-
T ss_pred EEEECCCCceEEEEEECCCCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC----CCcE-EEecCC-
Confidence 5 7888998999885 4443 455666788899999999999887666 58999999886311 2222 223344
Q ss_pred CccceEEEEEcCCCCEEEE-EeC-----------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC
Q 007306 454 ETTIVNHIQFHPDQIHLLS-IHE-----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG 520 (608)
Q Consensus 454 ~~~~v~~v~~sp~~~~l~~-~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg 520 (608)
..+.+++|+|+|++|++ +.+ +.|++||+.+++.........|...+.+++|+|+|++|++++.+.
T Consensus 217 --~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 217 --YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred --cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 57889999999999987 444 469999998876543333223577889999999999999887764
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2e-20 Score=191.87 Aligned_cols=311 Identities=12% Similarity=0.084 Sum_probs=196.9
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
...+..+++++++.++++++.++ +++|+........... .....+........+ .+...|.+++|+ +++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG--DDPNKIVDKVQGLLV------PMKFPIHHLALSCDNLT 106 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT--CCTTCEEECCCCEEE------CCSSCEEEEEECTTSCE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc--cCcccccccCccccc------cCCCcccEEEEcCCCCE
Confidence 45688999999999999999888 8888753211100000 000001111111111 367789999999 888
Q ss_pred EE----EEe-CCcEEEEEcCCC--------ce---eeEecCCCCCeEEEEEcCC-C-eEEEEeCCCcEEEEeCCCCceEE
Q 007306 337 LF----SAS-GGKISIFSLETF--------QT---LATFANPPPIATYFILLPQ-D-LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 337 l~----s~~-d~~i~vwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
|+ +++ |+.|++||+.++ +. +..+.+|...|.+++|+|+ + +|++++.||+|++||++++....
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC 186 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee
Confidence 88 677 899999999765 22 4556678999999999998 5 99999999999999999987777
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee-eeccCCCCccceEEEEEcCCCCEEEE-E-eC
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLS-I-HE 475 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d 475 (608)
...+|...|.+++|+|+|++|++|+.||+|++||++. +......... ....|. ..|.+++|++++.++++ + .+
T Consensus 187 ~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~---~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHP---VRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSC---EEEEEEEEEETTEEEEEEEETT
T ss_pred eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCc---eeEEEEEEecCceEEEEEccCC
Confidence 7778999999999999999999999999999999983 2211111110 001222 47999999999988876 3 44
Q ss_pred C------cEEEEECCCCc-----eeeeecCC-----CCCCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCce-e--EE
Q 007306 476 G------QIDVYEAPTLN-----HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLEL-R--CQ 535 (608)
Q Consensus 476 ~------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~-~--~~ 535 (608)
| .+++|++.+.. ....+... ....+-..+.+-++.+++++++. .+.|.|........ . ..
T Consensus 263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~ 342 (434)
T 2oit_A 263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWL 342 (434)
T ss_dssp CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEE
T ss_pred CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEe
Confidence 3 28999997642 11121111 11223333444477777776655 45566666443211 1 11
Q ss_pred Ee--ceeeccCCCcccccccEEEEEe--cC------------CCCEEEEEeCCCcEEEEeCCC
Q 007306 536 IN--LTAYAQPGTISLELYPLVIAAH--PL------------EPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 536 ~~--~~~~~~~g~~~~~v~~~~v~~s--p~------------d~~~las~s~Dg~v~iW~~~~ 582 (608)
+. .....+........+++.+++. .. -...|..-+.||.+..|.+..
T Consensus 343 ~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 343 LEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp ECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 10 0000111111122223333332 10 135788889999999999866
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=1.9e-21 Score=189.06 Aligned_cols=252 Identities=10% Similarity=0.009 Sum_probs=183.2
Q ss_pred EeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCC-C
Q 007306 277 LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLET-F 353 (608)
Q Consensus 277 ~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~-~ 353 (608)
++.|+.|.+||..+++. .... .|...|.+++|+ +++|++++++.|.+||+.+ +
T Consensus 18 ~~~~~~i~~~d~~~~~~---------------------~~~~---~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~ 73 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKM---------------------RVVW---QTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDP 73 (297)
T ss_dssp CCCCEEEEEEETTTTEE---------------------EEEE---EESSCCEEEEECTTSSEEEEEETTEEEEEESSSCC
T ss_pred CCcceeEEEEeCCCCce---------------------eeec---cCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCC
Confidence 34578888877665543 2111 377889999999 8899998899999999999 8
Q ss_pred ceeeEecCC-CCCeEEEEEcCCC-eEEEEe--CCC--cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEE-EEcCCC
Q 007306 354 QTLATFANP-PPIATYFILLPQD-LFAFGF--DDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADA 426 (608)
Q Consensus 354 ~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~--~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~ 426 (608)
+.......+ ...+.+++|+|++ .|++++ .++ .|..++..++. ...+..+ ..+.+++|+|+++.++ +++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~ 151 (297)
T 2ojh_A 74 SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ 151 (297)
T ss_dssp SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETT
T ss_pred CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCC
Confidence 877766655 3678899999999 888888 333 55555666555 3344433 3488999999999877 777899
Q ss_pred cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECC-CCceeeeecCCCCCCCeEE
Q 007306 427 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAP-TLNHTSQLVPDKMDLPITY 503 (608)
Q Consensus 427 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~v~~ 503 (608)
.+++|+++... .... ....+. ..+.+++|+|+|+++++ + .++.+++|++. .+..+..+.. +...+.+
T Consensus 152 ~~~l~~~~~~~----~~~~-~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~ 221 (297)
T 2ojh_A 152 VFDIYSMDIDS----GVET-RLTHGE---GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWF 221 (297)
T ss_dssp EEEEEEEETTT----CCEE-ECCCSS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEE
T ss_pred ceEEEEEECCC----Ccce-EcccCC---CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCC
Confidence 99999864321 1112 122333 57899999999998887 4 47889999876 4555555543 4678899
Q ss_pred EEEecCCCEEEEEEcC-----------CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC
Q 007306 504 ATYSCDGKCIYVSCKS-----------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN 572 (608)
Q Consensus 504 ~~~s~~~~~l~sg~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D 572 (608)
++|+|+|++|++++.+ +.|++||+.+++........ +| ...+. .++|+| ++.+|++++.|
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-----~~-~~~~~--~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-----GG-QGTMN--SPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-----ES-TTTSC--SCCBCT-TSSEEEEEEEC
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-----CC-Ccccc--cceECC-CCCEEEEEEec
Confidence 9999999999988776 56999999988765444321 22 23344 789999 78988888766
Q ss_pred C
Q 007306 573 G 573 (608)
Q Consensus 573 g 573 (608)
.
T Consensus 293 ~ 293 (297)
T 2ojh_A 293 P 293 (297)
T ss_dssp C
T ss_pred c
Confidence 3
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.3e-21 Score=215.59 Aligned_cols=321 Identities=10% Similarity=0.051 Sum_probs=211.9
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCC---cEEEEEEeeCCCEEEEEeC---------CCcEE
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG---RVVRLIYSHSGDFLVALTQ---------TATHK 284 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~---~V~~~~fsp~g~~l~s~s~---------dg~i~ 284 (608)
.|+|||+++++ +.|++|++||+.+ ++...+ +.. |.. .|.+++|||||++|++++. ++.|.
T Consensus 22 ~~s~dg~~~~~-~~d~~i~~~~~~~----g~~~~~-~~~--~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 22 NWISGQEYLHQ-SADNNIVLYNIET----GQSYTI-LSN--RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp EESSSSEEEEE-CTTSCEEEEESSS----CCEEEE-ECH--HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred EECCCCeEEEE-cCCCCEEEEEcCC----CcEEEE-Ecc--ccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 79999965555 4699999999984 444443 211 222 3899999999999999876 57777
Q ss_pred EEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEec-C
Q 007306 285 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-N 361 (608)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~-~ 361 (608)
+||+.+++ ..... .....+..++|| |+.|+++.++.|++|++.+++..+... +
T Consensus 94 ~~d~~~g~---------------------~~~~~---~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~ 149 (719)
T 1z68_A 94 IYDLSNGE---------------------FVRGN---ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNG 149 (719)
T ss_dssp EEETTTTE---------------------ECCSS---CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCC
T ss_pred EEECCCCc---------------------cccce---ecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCC
Confidence 77765553 21000 122457889999 889999899999999999887755332 2
Q ss_pred CCCCe-----------------EEEEEcCCC-eEEEEeCCC----------------------------------cEEEE
Q 007306 362 PPPIA-----------------TYFILLPQD-LFAFGFDDS----------------------------------SILVH 389 (608)
Q Consensus 362 ~~~~v-----------------~~~~~~~~~-~l~~~~~d~----------------------------------~i~vw 389 (608)
+...+ .+++|+||| .|++++.|. .|++|
T Consensus 150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 22222 489999999 888877552 78899
Q ss_pred eCCCCceE---E-----EeeCccccEEEEEEeCCCCEEEEEcCC----CcEEEEE----CCCCceecccceeeeeccCCC
Q 007306 390 CPCTKKTK---A-----KLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWD----AVGWKKLCSKFLHSFQTGLVP 453 (608)
Q Consensus 390 d~~~~~~~---~-----~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd----~~~~~~~~~~~~~~~~~~~~~ 453 (608)
|+.+++.. . .+.+|...+.+++|+||++++++.... ..|.+|| +.+++... .+.....++.
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~--~~~~~~~~~~- 306 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK--TQEHIEESRT- 306 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG--GGEEEEECSS-
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE--EEecccccCC-
Confidence 99988653 1 234578889999999998777664332 2488899 76643211 1100013444
Q ss_pred CccceE-----EEEEcCCCCEEEE--E-eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC----
Q 007306 454 ETTIVN-----HIQFHPDQIHLLS--I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS---- 519 (608)
Q Consensus 454 ~~~~v~-----~v~~sp~~~~l~~--~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d---- 519 (608)
..+. .+.|+|||+.++. + .++ .|++||+.+++ ...+.. +...+..+.++ +++.|+..+.+
T Consensus 307 --~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~--~~~~v~~~~~~-d~~~i~~~~~~~~~~ 380 (719)
T 1z68_A 307 --GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITS--GKWEAINIFRV-TQDSLFYSSNEFEEY 380 (719)
T ss_dssp --SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSC--SSSCEEEEEEE-CSSEEEEEESCGGGC
T ss_pred --ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEeccc--CceEEEEEEEE-eCCEEEEEEecCCCC
Confidence 4454 7899999996654 3 334 58888887766 344443 35568888888 88888777665
Q ss_pred -CeEEEEeCCC--Cce-eEEEeceeeccCCCcccccccEEEEEecCCCCEEE-EEeCC--CcEEEEeCCCCcc
Q 007306 520 -GHVKVFDTST--LEL-RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGLTN--GRVHVIEPLESEV 585 (608)
Q Consensus 520 -g~i~iwd~~~--~~~-~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s~D--g~v~iW~~~~~~~ 585 (608)
+.+++|.+.. +.. ...+... ..++ ...+ ..++|+| |+++++ +++.+ ..+.+|++.+++.
T Consensus 381 ~~~~~l~~~~~~~g~~~~~~l~~~---~~~~-~~~~--~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 381 PGRRNIYRISIGSYPPSKKCVTCH---LRKE-RCQY--YTASFSD-YAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp TTCBEEEEEECSSSSCCEEESSTT---TTTT-TBCB--EEEEECG-GGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred CceEEEEEEeCCCCCCCceeccCc---cCCC-CCce--EEEEECC-CCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 7888888764 421 2222210 0112 2223 3789999 666665 44443 4788999987763
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=6e-20 Score=184.48 Aligned_cols=286 Identities=11% Similarity=0.085 Sum_probs=186.7
Q ss_pred cCCCCeEEEee----cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC----CcEEEEecCC
Q 007306 219 LPDADSAVCAK----SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT----ATHKLWKWQS 290 (608)
Q Consensus 219 s~dg~~l~~~~----~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d----g~i~iw~~~~ 290 (608)
.++..+++.|+ .++.|.+|+++.. .+++...... +...+..++|+|||++|++++.+ +.+.+|++..
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~--~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEE--TGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETT--TCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCC--CCCEEEeecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 34445566664 4578999988632 2444433221 56778889999999999999886 7999997654
Q ss_pred CcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe--CCcEEEEEcCCCceeeEe------cC-
Q 007306 291 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS--GGKISIFSLETFQTLATF------AN- 361 (608)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~--d~~i~vwd~~~~~~~~~~------~~- 361 (608)
. ++.+........+......+++.++++++++ ++.|.+|++.....+..+ .+
T Consensus 85 ~-------------------~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~ 145 (361)
T 3scy_A 85 E-------------------KGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS 145 (361)
T ss_dssp T-------------------TTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC
T ss_pred C-------------------CCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC
Confidence 3 1211110000023445666666777777776 789999999754332211 11
Q ss_pred -------CCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCce------E-------EEeeCccccEEEEEEeCCCCEE
Q 007306 362 -------PPPIATYFILLPQD-LFAFGF-DDSSILVHCPCTKKT------K-------AKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 362 -------~~~~v~~~~~~~~~-~l~~~~-~d~~i~vwd~~~~~~------~-------~~~~~~~~~v~~~~~~~~~~~l 419 (608)
+...+.+++|+|+| .+++++ .++.|.+|++..... + .....+...+..++|+|+|+++
T Consensus 146 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l 225 (361)
T 3scy_A 146 GPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFA 225 (361)
T ss_dssp CSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred CCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEE
Confidence 12235789999999 665554 578999998775431 1 1122245568899999999987
Q ss_pred EEEc-CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-e--CCcEEEEECC--CCc--eeee
Q 007306 420 VSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H--EGQIDVYEAP--TLN--HTSQ 491 (608)
Q Consensus 420 ~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~--d~~i~iwd~~--~~~--~~~~ 491 (608)
++++ .++.|.+||+.+++......+. ....+. .....++|+|||++|+++ . ++.|.+|++. +++ .+..
T Consensus 226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~ 301 (361)
T 3scy_A 226 YLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY 301 (361)
T ss_dssp EEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred EEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence 7666 6899999999875432222222 111222 356899999999999774 3 4789999985 444 3333
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEe--CCCCceeEE
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFD--TSTLELRCQ 535 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd--~~~~~~~~~ 535 (608)
+.. ...+..++|+|||++|++++ .++.|.+|+ ..++++...
T Consensus 302 ~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 302 QLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred ecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeec
Confidence 432 45678899999999999888 568999964 456765443
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=2.7e-20 Score=185.87 Aligned_cols=245 Identities=13% Similarity=0.088 Sum_probs=165.4
Q ss_pred CCCCeEEEEEe--CCEEEEEe----CCcEEEEEcCCCc--eeeEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCC
Q 007306 323 PKDSISCFALR--GSHLFSAS----GGKISIFSLETFQ--TLATFANPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC 392 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~----d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vwd~~ 392 (608)
+...+..++|+ |+ +++++ ++.|.+|++.+++ .+..+..+...+..++|+|+| .|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 44667789999 55 55554 3799999997765 344444566778899999999 777777 78899999986
Q ss_pred C-Cc--eEEEeeC---------ccccEEEEEEeCCCCEEEEEcCCCcEEEEECC-CCceecccceeeeeccCCCCccceE
Q 007306 393 T-KK--TKAKLKG---------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVN 459 (608)
Q Consensus 393 ~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~ 459 (608)
. +. .+..+.. +...+.+++|+|+|+.+++...++.|.+||+. +++... +........ ..+.
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~g---~~p~ 190 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSE---QSVLTMEAG---FGPR 190 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEE---EEEEECCTT---CCEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEE---eeeEEcCCC---CCCc
Confidence 3 32 2333321 12348899999999977777778999999998 332211 111111111 3577
Q ss_pred EEEEcCCCCEEEE-E-eCCcEEEEECCC--Cce--eeeecCCCC----CCCeEEEEEecCCCEEE-EEEcCCeEEEEeCC
Q 007306 460 HIQFHPDQIHLLS-I-HEGQIDVYEAPT--LNH--TSQLVPDKM----DLPITYATYSCDGKCIY-VSCKSGHVKVFDTS 528 (608)
Q Consensus 460 ~v~~sp~~~~l~~-~-~d~~i~iwd~~~--~~~--~~~~~~~~~----~~~v~~~~~s~~~~~l~-sg~~dg~i~iwd~~ 528 (608)
.++|+|||+++++ + .++.|.+|++.. ++. +..+..... ...+..++|+|||++|+ ++..++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 8999999998777 4 578899999874 443 222222111 14588999999999885 45568999999997
Q ss_pred CC---ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC-CCcEEEE--eCCCCcc
Q 007306 529 TL---ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVI--EPLESEV 585 (608)
Q Consensus 529 ~~---~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg~v~iW--~~~~~~~ 585 (608)
.. +.+..+.. + ... +..++|+| |+++|++++. ++.|.+| |..+++.
T Consensus 271 ~~g~~~~~~~~~~-------~-~~~--~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 271 ADGHLTLIQQIST-------E-GDF--PRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp GGGCEEEEEEEEC-------S-SSC--CCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCcEEEeEEEec-------C-CCC--cCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 33 22222221 1 222 34899999 7888888775 4899999 4455554
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.9e-20 Score=205.81 Aligned_cols=285 Identities=13% Similarity=0.038 Sum_probs=197.4
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCC---
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQS--- 290 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~--- 290 (608)
..+.|||| +.++.+ .++.|++||+.+ ++...+ .. +...+.+++|||||++|+++ .++.|.+|++.+
T Consensus 85 ~~~~~spd-~~~~~~-~~~~i~~~d~~~----~~~~~l--~~--~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 85 FRTLDAGR-GLVVLF-TQGGLVGFDMLA----RKVTYL--FD--TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE 153 (706)
T ss_dssp EEEEETTT-TEEEEE-ETTEEEEEETTT----TEEEEE--EC--CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred eeEEECCC-CeEEEE-ECCEEEEEECCC----CceEEc--cC--CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence 34579999 666655 459999999974 455443 22 56788999999999999985 689999999877
Q ss_pred --CcceeeecccceeeEEeeCCCCeeeecc-ccCCCCCCeEEEEEe--CCEEEEEe-C----------------------
Q 007306 291 --NKQSLEEENVNMESQLYQPSSKLVMTND-IAADPKDSISCFALR--GSHLFSAS-G---------------------- 342 (608)
Q Consensus 291 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~s--~~~l~s~~-d---------------------- 342 (608)
++.... ..........-. ..+.+...+.+++|+ |++|++++ |
T Consensus 154 ~~g~~~~~----------~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 154 GMSRAIAV----------TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CCCCCEES----------CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred cCCCcEEe----------ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 543111 000000000000 000122346789999 88888876 3
Q ss_pred -----------CcEEEEEcCCCceeeEec--CCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEEee-C
Q 007306 343 -----------GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAKLK-G 402 (608)
Q Consensus 343 -----------~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~~~-~ 402 (608)
..|.+||+.+++...... .+...+.+++|+||| .|++++.++ .|++||+.+++....+. .
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 579999999887655443 456778999999999 888877775 89999999984333332 2
Q ss_pred -ccc---cEEEEEEeC--CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEE-EEEcCCCCEEEE-E-
Q 007306 403 -HQN---RITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-I- 473 (608)
Q Consensus 403 -~~~---~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~~-~- 473 (608)
+.. .+.+++|+| ||+++++++.|+.+++|++... ...+..+ ..+. ..+.+ ++|+|+|+.|+. +
T Consensus 304 ~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~----~~~~~~l-~~~~---~~v~~~~~~spdg~~l~~~~~ 375 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT----GRLIRQV-TKGE---WEVTNFAGFDPKGTRLYFEST 375 (706)
T ss_dssp ECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT----SCEEEEC-CCSS---SCEEEEEEECTTSSEEEEEES
T ss_pred cCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC----CCEEEec-CCCC---eEEEeeeEEcCCCCEEEEEec
Confidence 221 246789999 9999999999999999987621 1223322 2333 45766 799999998877 4
Q ss_pred eCC----cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC----CeEEEEeCCCCc
Q 007306 474 HEG----QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLE 531 (608)
Q Consensus 474 ~d~----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~ 531 (608)
.++ .|+.||..+++ ...+. +...+.+++|||||++++.++.+ +.|++||+.+++
T Consensus 376 ~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 376 EASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 333 67777887765 33442 36678999999999998876554 569999999887
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=5.6e-20 Score=183.57 Aligned_cols=276 Identities=11% Similarity=0.044 Sum_probs=183.7
Q ss_pred cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC---CCcEEEEecCCCcceeeecccceeeEE
Q 007306 230 SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ---TATHKLWKWQSNKQSLEEENVNMESQL 306 (608)
Q Consensus 230 ~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~---dg~i~iw~~~~~~~~~~~~~~~~~~~~ 306 (608)
.++.|.+|+++.. .+.+..+.... +...+..++|+|||+ |++++. ++.|.+|++.++...
T Consensus 14 ~~~~i~v~~~d~~--tg~~~~~~~~~--~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTT--AKTLTNDGLLA--ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------ 76 (347)
T ss_dssp SCCEEEEEEEETT--TTEEEEEEEEE--ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred CCCCEEEEEEcCC--CCeEEEeeeee--ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence 4567888888642 34444322222 466788899999999 666554 589999987555420
Q ss_pred eeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCC-Cc--eeeEecCC---------CCCeEEEE
Q 007306 307 YQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS--GGKISIFSLET-FQ--TLATFANP---------PPIATYFI 370 (608)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~-~~--~~~~~~~~---------~~~v~~~~ 370 (608)
.+.... .+...+..++|+ +++|++++ ++.|.+|++.. +. .+..+... ...+.+++
T Consensus 77 -------~~~~~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 147 (347)
T 3hfq_A 77 -------KLNTVV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD 147 (347)
T ss_dssp -------EEEEEE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred -------Eeeeee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence 111000 255677889999 78888877 68999999963 32 33333221 22478899
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCC-CCceEE--EeeC-ccccEEEEEEeCCCCEEEE-EcCCCcEEEEECCC--Cceeccc
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPC-TKKTKA--KLKG-HQNRITCLAYSLSLNVLVS-SGADAQLCVWDAVG--WKKLCSK 442 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~s-~~~d~~i~vwd~~~--~~~~~~~ 442 (608)
|+|+| .++++..++.|.+|++. +++... .+.. ....+..++|+|||+++++ ...++.|.+|++.. ++.....
T Consensus 148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee
Confidence 99999 88888889999999998 554332 2222 2336788999999996555 56789999999874 3221111
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCC-C--ceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPT-L--NHTSQLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~-~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
.+.....+.. ....+..++|+|||++|++ + .++.|.+|++.. + +.+..+.. +...+..++|+|||++|++++
T Consensus 228 ~~~~~~~~~~-~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~ 304 (347)
T 3hfq_A 228 IVKTIPADYT-AHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVN 304 (347)
T ss_dssp EEESSCTTCC-SCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEE
T ss_pred eeeecCCCCC-CCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEE
Confidence 1111111100 0034788999999998866 4 578999999972 2 44444433 355678999999999998887
Q ss_pred cC-CeEEEE--eCCCCceeE
Q 007306 518 KS-GHVKVF--DTSTLELRC 534 (608)
Q Consensus 518 ~d-g~i~iw--d~~~~~~~~ 534 (608)
.+ +.|.+| |..++++..
T Consensus 305 ~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 305 QNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp TTTTEEEEEEECTTTCCEEE
T ss_pred cCCCcEEEEEEeCCCCeEEe
Confidence 65 899999 556777554
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.1e-20 Score=202.66 Aligned_cols=261 Identities=11% Similarity=0.023 Sum_probs=187.6
Q ss_pred EeecCCCCeEEEeec-CCeEEEeeccCCCCCCceeeEeecCCCCC-CcEEEEEEeeCCCEEEEEeC---CCcEEEEecCC
Q 007306 216 STSLPDADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFG-GRVVRLIYSHSGDFLVALTQ---TATHKLWKWQS 290 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~-d~~i~iWd~~~~~~~~~~~~~~l~~~~h~-~~V~~~~fsp~g~~l~s~s~---dg~i~iw~~~~ 290 (608)
+.|+|||+.||+++. ||+++||++. .+...+++ . |. ..|..++|||| +.+++++. +....||.+..
T Consensus 27 ~~~~~DG~~la~~s~~~g~~~lw~~~----~g~~~~lt--~--~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 27 LQGVVDGDKLLVVGFSEGSVNAYLYD----GGETVKLN--R--EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp EEEEETTTEEEEEEEETTEEEEEEEE----TTEEEECC--S--SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred eecCCCCCeEEEEEccCCceeEEEEc----CCCcEeee--c--ccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 379999999999987 9999999986 35555532 2 44 68999999999 77777765 45667765432
Q ss_pred CcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC-E-EEEEeCCcEEEEEcCCCceeeEecCCCCCe
Q 007306 291 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS-H-LFSASGGKISIFSLETFQTLATFANPPPIA 366 (608)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~-~-l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v 366 (608)
|+ ..+.. ... ....+...+|+ ++ . +++++++.+.+||+.+++.......+.
T Consensus 98 ----------------~~-~g~~~-~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--- 152 (582)
T 3o4h_A 98 ----------------SR-PGEEQ-RLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--- 152 (582)
T ss_dssp ----------------TS-TTCCE-ECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---
T ss_pred ----------------cC-CCccc-ccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---
Confidence 10 11111 111 11223344555 43 3 444446666699999887766554433
Q ss_pred EEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC--cEEEEECCCCcee
Q 007306 367 TYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKL 439 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~ 439 (608)
.+++|+||| .|++++.+ +.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+.+++..
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 789999999 88877776 78999999988765 5677888899999999999999888888 8999999885432
Q ss_pred cccceeeeeccCCCCccceEEEE--------EcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCC
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQ--------FHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDG 510 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~--------~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 510 (608)
...++. ..+..++ |+|||..+++ +.++.+++|++ ++.... ....+.+++|+ ++
T Consensus 232 -------~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~~~~v~~~~~s-dg 293 (582)
T 3o4h_A 232 -------DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----PQGNHGRVVLW-RG 293 (582)
T ss_dssp -------ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----CSSEEEEEEEE-TT
T ss_pred -------EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----CCCceEEEEec-CC
Confidence 223333 3444555 9999977776 48999999999 665542 24678899999 99
Q ss_pred CEEEEEEcCC---eEEEEeCCC
Q 007306 511 KCIYVSCKSG---HVKVFDTST 529 (608)
Q Consensus 511 ~~l~sg~~dg---~i~iwd~~~ 529 (608)
+++++++.+. .+++|+..+
T Consensus 294 ~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 294 KLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEEcCCCCCCeEEEEcCCC
Confidence 9999988874 477777654
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=8.2e-21 Score=203.67 Aligned_cols=267 Identities=9% Similarity=0.007 Sum_probs=188.2
Q ss_pred CCCcEEEEEEeeCCCEEEEEeC-CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~ 335 (608)
+..+|++++|+|||++||+++. ||+++||++.++. ..+.. .++...+..++|+ ++
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~---------------------~~~lt--~~~~~~~~~~~~spd~ 76 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE---------------------TVKLN--REPINSVLDPHYGVGR 76 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE---------------------EEECC--SSCCSEECEECTTCSE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC---------------------cEeee--cccccccccccCCCCe
Confidence 3568999999999999999887 9999999864432 22211 1233678899999 75
Q ss_pred EEEEEeC----CcEEEEEcCC---CceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCcccc
Q 007306 336 HLFSASG----GKISIFSLET---FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 336 ~l~s~~d----~~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
.+++++. ....+|.+.. +... .+... ..+...+|+|++ .+++.+.++.+.+||+.+++.......+.
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-- 152 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-- 152 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--
Confidence 5555542 4556665533 3332 33322 234466888887 44444455556699999887665554332
Q ss_pred EEEEEEeCCCCEEEEEcCC----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCC--cEE
Q 007306 407 ITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QID 479 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~--~i~ 479 (608)
.+++|+|||+++++++.+ +.|++||+.+++. . ...++. +.+.+++|||||+.|+++ .++ .|+
T Consensus 153 -~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~------~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 153 -FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL------R-VFDSGE---GSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp -CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC------E-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred -ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc------e-EeecCC---CccccceECCCCCEEEEccCCCeeEEE
Confidence 789999999999988877 7899999988542 2 123444 578999999999999974 667 899
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEE--------EecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccc
Q 007306 480 VYEAPTLNHTSQLVPDKMDLPITYAT--------YSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLEL 551 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v 551 (608)
+||+.+++.. .+. .|...+..++ |+|||.++++++.|+.+++|++ |+..... ...+
T Consensus 222 ~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------~~~v 285 (582)
T 3o4h_A 222 TVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------QGNH 285 (582)
T ss_dssp EECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------SSEE
T ss_pred EEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------CCce
Confidence 9999988876 443 3455566666 9999999999999999999999 6544311 2223
Q ss_pred ccEEEEEecCCCCEEEEEeCCC---cEEEEeCCC
Q 007306 552 YPLVIAAHPLEPNRIALGLTNG---RVHVIEPLE 582 (608)
Q Consensus 552 ~~~~v~~sp~d~~~las~s~Dg---~v~iW~~~~ 582 (608)
.+++|+ ++.++++++.+. .+.+|+..+
T Consensus 286 --~~~~~s--dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 286 --GRVVLW--RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp --EEEEEE--TTEEEEEEEETTEEEEEEEETTCC
T ss_pred --EEEEec--CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 388898 478888888774 477777654
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=4.9e-20 Score=183.88 Aligned_cols=237 Identities=15% Similarity=0.041 Sum_probs=177.8
Q ss_pred EEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCC-CCeEEEEEcCCC-eE-EEEeCCCcEEEEeCCCCceEEEeeCc-
Q 007306 331 ALR--GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LF-AFGFDDSSILVHCPCTKKTKAKLKGH- 403 (608)
Q Consensus 331 ~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l-~~~~~d~~i~vwd~~~~~~~~~~~~~- 403 (608)
+++ +.++++++ +++|.+||+.+++.+..+..+. ..+..++|+|++ .+ +++..++.|.+||+.+++.+..+...
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 445 45677777 9999999999999888887543 256789999999 55 55567899999999999888776632
Q ss_pred -----cccEEEEEEeCCCCEEEEEcCC------------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC
Q 007306 404 -----QNRITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 466 (608)
Q Consensus 404 -----~~~v~~~~~~~~~~~l~s~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 466 (608)
...+.+++|+|+|+++++++.+ +.|.+||+.+++.. ..+. ....+ ..+.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~-~~~~~----~~~~~~~~s~d 158 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--KPVR-TFPMP----RQVYLMRAADD 158 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--CCSE-EEECC----SSCCCEEECTT
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc--ceee-eccCC----CcccceeECCC
Confidence 2337789999999999988865 89999999874321 1122 11222 35778999999
Q ss_pred CCEEEEEeCCcEEEEECCCCceeeeecCCC--------------------------------------------------
Q 007306 467 QIHLLSIHEGQIDVYEAPTLNHTSQLVPDK-------------------------------------------------- 496 (608)
Q Consensus 467 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------------------- 496 (608)
|+ ++++ ++.|++||..+++.+..+....
T Consensus 159 g~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred Cc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99 5553 4459999999888776654321
Q ss_pred ----------------CCCCeEEEEEec-CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEe
Q 007306 497 ----------------MDLPITYATYSC-DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 559 (608)
Q Consensus 497 ----------------~~~~v~~~~~s~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 559 (608)
+...+..++|+| +|++++++ ++.|++||+.+++.+..+.. ....+ +++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---------~~~~~--~~~~s 303 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL---------DHTYY--CVAFD 303 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC---------SSCCC--EEEEC
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC---------CCCcc--ceEEC
Confidence 001355678889 99999988 88999999999988777652 22234 89999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 560 PLEPNRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
| ++++|++++.++.|++||+.+++......
T Consensus 304 ~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 304 K-KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp S-SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred C-CCCEEEEecCCCeEEEEeccccceeeeee
Confidence 9 78888888889999999999987654443
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=2e-19 Score=182.52 Aligned_cols=297 Identities=12% Similarity=0.026 Sum_probs=190.6
Q ss_pred CCCcEEE-----EEEeeCCCEEEEEeC-CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE
Q 007306 258 FGGRVVR-----LIYSHSGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 331 (608)
Q Consensus 258 h~~~V~~-----~~fsp~g~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (608)
|...... .+|||||++|+.++. +|...|| +||..++...+... ++...+..+.
T Consensus 29 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~-------------------~~d~~~g~~~~lt~--~~~~~~~~~~ 87 (388)
T 3pe7_A 29 PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYY-------------------LLDLNTQVATQLTE--GRGDNTFGGF 87 (388)
T ss_dssp TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEE-------------------EEETTTCEEEECCC--SSCBCSSSCE
T ss_pred CcccccchhhcCccCCCCCCEEEEEEcCCCCceEE-------------------EEeCCCCceEEeee--CCCCCccceE
Confidence 5555555 789999999999988 7754444 44555555444322 3544555678
Q ss_pred Ee--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEE--EcCCC-eEEEE----------------------eCC
Q 007306 332 LR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFI--LLPQD-LFAFG----------------------FDD 383 (608)
Q Consensus 332 ~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~--~~~~~-~l~~~----------------------~~d 383 (608)
|+ ++.|+.++ ++.|.+||+.+++....+..+...+.... ++|++ .++.. ..+
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 88 LSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 99 88999999 88999999999988777776666554444 48898 66532 234
Q ss_pred CcEEEEeCCCCceEEEeeCccccEEEEEEeC-CCCEEEEEcCC------CcEEEEECCCCceecccceeeeeccCCCCcc
Q 007306 384 SSILVHCPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 456 (608)
Q Consensus 384 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 456 (608)
..|++||+.+++.... ..+...+..+.|+| ||+.|+....+ ..|.++|..+.. ...+...... .
T Consensus 168 ~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~~~~~--~ 238 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN------MRKVKTHAEG--E 238 (388)
T ss_dssp EEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC------CEESCCCCTT--E
T ss_pred ceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc------eEEeeeCCCC--c
Confidence 6899999999875544 34667789999999 99998877653 378888877632 1212222210 2
Q ss_pred ceEEEEEcCCCCEEEE-E-eCC----cEEEEECCCCceeeeecCCCCCC---CeEEEEEecCCCEEEEE---------Ec
Q 007306 457 IVNHIQFHPDQIHLLS-I-HEG----QIDVYEAPTLNHTSQLVPDKMDL---PITYATYSCDGKCIYVS---------CK 518 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~-~-~d~----~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~sg---------~~ 518 (608)
.+..++|+|||+.|+. + .++ .|++||+.+++.........+.. .....+|+|||+.|+.. ..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 318 (388)
T 3pe7_A 239 SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN 318 (388)
T ss_dssp EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC
T ss_pred ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC
Confidence 4778899999998865 4 222 39999999887433222111000 01113799999988854 44
Q ss_pred CCeEEEEeCCCCceeEEEeceeeccC-CCcccccccEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCccc
Q 007306 519 SGHVKVFDTSTLELRCQINLTAYAQP-GTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVE 586 (608)
Q Consensus 519 dg~i~iwd~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iW~~~~~~~~ 586 (608)
+..|++||+.+++... +..+..... -.......+..++|+| |++.|+.++ .+|...||.+.-.+..
T Consensus 319 ~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 319 DPFLYVFNMKNGTQHR-VARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp CCEEEEEETTTTEEEE-EEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred CCEEEEEeccCCceEE-eccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEEECChhc
Confidence 6789999999987543 332110000 0000001234789999 788777666 5788888877655443
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=2.1e-19 Score=179.34 Aligned_cols=245 Identities=11% Similarity=0.072 Sum_probs=177.1
Q ss_pred EEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEE-
Q 007306 264 RLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA- 340 (608)
Q Consensus 264 ~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~- 340 (608)
.+++++++.++++++.++.|.+||..+++. ...... +....+..++|+ +++++.+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------~~~~~~-~~~~~~~~~~~s~dg~~~~v~~ 61 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------YKSCVM-PDKFGPGTAMMAPDNRTAYVLN 61 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------EEEEEC-SSCCSSCEEEECTTSSEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------EEEEec-CCCCCCceeEECCCCCEEEEEe
Confidence 456788999999999999999998776654 111110 122256788999 6665544
Q ss_pred e-CCcEEEEEcCCCceeeEecCCC------CCeEEEEEcCCC-eEEEEeCC------------CcEEEEeCCCCce---E
Q 007306 341 S-GGKISIFSLETFQTLATFANPP------PIATYFILLPQD-LFAFGFDD------------SSILVHCPCTKKT---K 397 (608)
Q Consensus 341 ~-d~~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~-~l~~~~~d------------~~i~vwd~~~~~~---~ 397 (608)
. ++.|.+||+.+++....+..+. ..+.+++|+|+| .+++++.+ +.|.+||+.+++. +
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 141 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 141 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee
Confidence 4 7899999999998887776432 236789999999 88888765 8999999988543 3
Q ss_pred EEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceee-----------------------------e-
Q 007306 398 AKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHS-----------------------------F- 447 (608)
Q Consensus 398 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------------------------~- 447 (608)
..+. +...+.+++|+|+|+ +++++ +.|.+||+.+++......... +
T Consensus 142 ~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 142 RTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp EEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred eecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 3444 334688999999999 55554 349999998865432111110 0
Q ss_pred ec--------------------cCC---------CCccceEEEEEcC-CCCEEEEEeCCcEEEEECCCCceeeeecCCCC
Q 007306 448 QT--------------------GLV---------PETTIVNHIQFHP-DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKM 497 (608)
Q Consensus 448 ~~--------------------~~~---------~~~~~v~~v~~sp-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~ 497 (608)
.. ... +....+..++|+| ++++++++ ++.|.+||+.+++.+..+..
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~--- 293 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL--- 293 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC---
Confidence 00 000 0001356788899 99999988 89999999999998877754
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 498 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 498 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
...+.+++|+|+|++|++++.++.|++||+.+++.+..+..
T Consensus 294 ~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 294 DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 34567899999999999988899999999999998887753
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=7.3e-18 Score=169.21 Aligned_cols=248 Identities=14% Similarity=0.109 Sum_probs=163.4
Q ss_pred CCCCeEEEEEe--CCEEEEEe-C----CcEEEEEcCC--Cce--eeEecCCCCCeEEEEEcCCC-eEEEEe-CCCcEEEE
Q 007306 323 PKDSISCFALR--GSHLFSAS-G----GKISIFSLET--FQT--LATFANPPPIATYFILLPQD-LFAFGF-DDSSILVH 389 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d----~~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vw 389 (608)
+...+..++|+ +++|++++ + +.|.+|++.. ++. +.....+......+++ ++ .+++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 44566778999 78888888 5 7999998865 433 3334445556677777 66 555554 68899999
Q ss_pred eCCCCceEEEe------eC--------ccccEEEEEEeCCCCEEEEEc-CCCcEEEEECCCCce------eccc-ceeee
Q 007306 390 CPCTKKTKAKL------KG--------HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKK------LCSK-FLHSF 447 (608)
Q Consensus 390 d~~~~~~~~~~------~~--------~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~------~~~~-~~~~~ 447 (608)
++.....+..+ .+ +...+.+++|+|+|+++++++ .++.|.+|++..... .... .....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322211 11 123468899999999765554 588999999876431 1000 00101
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEECCCCce--eeeecC-CCCCCCeEEEEEecCCCEEEEEEcC--C
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEAPTLNH--TSQLVP-DKMDLPITYATYSCDGKCIYVSCKS--G 520 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~--~~~~~~-~~~~~~v~~~~~s~~~~~l~sg~~d--g 520 (608)
..... ..+..++|+|+|+++++ + .++.|.+||+.+++. +..+.. ..+......++|+|||++|+++..+ +
T Consensus 206 ~~~~~---~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 206 KVAPG---SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp ECCTT---CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred ecCCC---CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 11122 45789999999998887 4 578999999987754 222221 1234567899999999999777665 8
Q ss_pred eEEEEeCC--CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe-CCCcEEEEeC--CCCcc
Q 007306 521 HVKVFDTS--TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEP--LESEV 585 (608)
Q Consensus 521 ~i~iwd~~--~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iW~~--~~~~~ 585 (608)
.|.+|++. +++........ . . ..+..++|+| |+++|++++ .++.|.+|++ .+++.
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~-----~--g--~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQL-----T--G--IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEE-----C--S--SCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEEEcCCCCcEEEeeEec-----C--C--CCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 99999996 45532221111 0 1 1244899999 789888887 6789999655 45544
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=2.3e-18 Score=189.74 Aligned_cols=329 Identities=8% Similarity=0.056 Sum_probs=206.0
Q ss_pred EeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCC-----cEEEEEEeeCCCEEEEEeCCCcEEEEecCC
Q 007306 216 STSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGG-----RVVRLIYSHSGDFLVALTQTATHKLWKWQS 290 (608)
Q Consensus 216 ~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~-----~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~ 290 (608)
+.|+|||++++++ |++|++||+.+ +.+..+ +.+ |.. ....++|||||++|+.++.++.+. ..
T Consensus 22 ~~w~~dg~~~~~~--~~~i~~~~~~~----~~~~~~-~~~--~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~--r~-- 88 (740)
T 4a5s_A 22 LRWISDHEYLYKQ--ENNILVFNAEY----GNSSVF-LEN--STFDEFGHSINDYSISPDGQFILLEYNYVKQW--RH-- 88 (740)
T ss_dssp EEECSSSEEEEEE--TTEEEEEETTT----CCEEEE-ECT--TTTTTCCSCCCEEEECTTSSEEEEEEEEEECS--SS--
T ss_pred cEECCCCcEEEEc--CCcEEEEECCC----CceEEE-Eec--hhhhhhcccccceEECCCCCEEEEEECCeeeE--EE--
Confidence 3799999999986 99999999984 444443 433 432 234588999999999988764321 00
Q ss_pred CcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEec-CCCCCe-
Q 007306 291 NKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFA-NPPPIA- 366 (608)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~-~~~~~v- 366 (608)
+....+.+||..++++.+.. .|...+..++|| |+.|+.+.++.|.+|++.+++..+... ++...+
T Consensus 89 --------~~~~~~~~~d~~~~~~~~l~---~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 89 --------SYTASYDIYDLNKRQLITEE---RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp --------CEEEEEEEEETTTTEECCSS---CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred --------ccceEEEEEECCCCcEEEcc---cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCcccee
Confidence 00111235566666554422 467789999999 889999999999999999887654322 222222
Q ss_pred ----------------EEEEEcCCC-eEEEEeCCC------------------------------------cEEEEeCCC
Q 007306 367 ----------------TYFILLPQD-LFAFGFDDS------------------------------------SILVHCPCT 393 (608)
Q Consensus 367 ----------------~~~~~~~~~-~l~~~~~d~------------------------------------~i~vwd~~~ 393 (608)
..+.||||| .|+.++.|. .|++||+.+
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~ 237 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDS 237 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTS
T ss_pred cCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCC
Confidence 348999999 888765321 588899988
Q ss_pred ---Cc--eEEEee------CccccEEEEEEeCCCCEEEEEcC----CCcEEEEECCCCc----eecccceeeeeccCCCC
Q 007306 394 ---KK--TKAKLK------GHQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWK----KLCSKFLHSFQTGLVPE 454 (608)
Q Consensus 394 ---~~--~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~ 454 (608)
++ ....+. +|...+..++|+|||+.++.... +..|.+||+.+++ +.....+ +..++.
T Consensus 238 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l--~~~~~~-- 313 (740)
T 4a5s_A 238 LSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQH--IEMSTT-- 313 (740)
T ss_dssp CCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCE--EEECSS--
T ss_pred CCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEe--eeccCC--
Confidence 73 222333 37778999999999997665432 3479999998865 2111111 112332
Q ss_pred ccce-----EEEEEcCCCCEEE-E-E-eC--CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----
Q 007306 455 TTIV-----NHIQFHPDQIHLL-S-I-HE--GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----- 519 (608)
Q Consensus 455 ~~~v-----~~v~~sp~~~~l~-~-~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----- 519 (608)
..+ ..++|+|||+.++ . + .+ ..|++||..++... .+..+ ...+..+. ++|++.|+..+..
T Consensus 314 -~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g--~~~v~~~~-~~d~~~i~f~~~~~~~~~ 388 (740)
T 4a5s_A 314 -GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKG--TWEVIGIE-ALTSDYLYYISNEYKGMP 388 (740)
T ss_dssp -SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCS--SSCEEEEE-EECSSEEEEEESCGGGCT
T ss_pred -ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccC--CEEEEEEE-EEeCCEEEEEEecCCCCC
Confidence 233 3688999999877 4 4 33 36899999766554 44332 45565543 3557666654433
Q ss_pred C--eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCc
Q 007306 520 G--HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN---GRVHVIEPLESE 584 (608)
Q Consensus 520 g--~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D---g~v~iW~~~~~~ 584 (608)
+ .|+..++..+.....++... .+. .... ..++|+| ++.+++..... ..+.+++..+++
T Consensus 389 ~~~~ly~v~~~g~~~~~~lt~~~---~~~-~~~~--~~~~~S~-dg~~~~~~~s~~~~p~~~l~~~~~~~ 451 (740)
T 4a5s_A 389 GGRNLYKIQLIDYTKVTCLSCEL---NPE-RCQY--YSVSFSK-EAKYYQLRCSGPGLPLYTLHSSVNDK 451 (740)
T ss_dssp TCBEEEEEETTEEEEEEESSTTT---STT-TBCB--EEEEECT-TSSEEEEEECSBSSCEEEEEETTTTE
T ss_pred ceeEEEEEECCCCCcceeecccc---CCC-CCce--EEEEECC-CCCEEEEEeCCCCCCEEEEEECCCCc
Confidence 3 45555555544332332110 011 1223 3899999 67776655433 367788877654
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.6e-19 Score=183.63 Aligned_cols=250 Identities=13% Similarity=0.112 Sum_probs=170.2
Q ss_pred CCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCc----------eeeE-----ecCCCCCeEEEEEcCCC-eEE----E
Q 007306 323 PKDSISCFALR--GSHLFSAS-GGKISIFSLETFQ----------TLAT-----FANPPPIATYFILLPQD-LFA----F 379 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~----------~~~~-----~~~~~~~v~~~~~~~~~-~l~----~ 379 (608)
+...++.++++ +.++++++ ++ +++|+..... .+.. ...+...|.+++|+|++ +|+ +
T Consensus 35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 34467888998 77888888 66 9998753210 1111 11345679999999999 888 7
Q ss_pred EeCCCcEEEEeCCCC--------c---eEEEeeCccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 380 GFDDSSILVHCPCTK--------K---TKAKLKGHQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 380 ~~~d~~i~vwd~~~~--------~---~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
|+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++. .+. .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-----~~~-~ 187 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-----KVC-A 187 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-----EEE-E
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-----cee-e
Confidence 889999999998754 2 24556779999999999997 8899999999999999999852 222 2
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCC-----CCCCCeEEEEEecCCCEEEEEE-cCC
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPD-----KMDLPITYATYSCDGKCIYVSC-KSG 520 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~sg~-~dg 520 (608)
..+|. ..|++++|+|+|++|++ +.|+.|++||.+ ++....+..+ .|...+.+++|++++.++++.+ .||
T Consensus 188 ~~~~~---~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 188 TLPST---VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp EECGG---GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred ccCCC---CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 23455 68999999999999999 589999999997 5555554332 1234899999999998886543 343
Q ss_pred ------eEEEEeCCCCcee-----EEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCcccc
Q 007306 521 ------HVKVFDTSTLELR-----CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL-TNGRVHVIEPLESEVEW 587 (608)
Q Consensus 521 ------~i~iwd~~~~~~~-----~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s-~Dg~v~iW~~~~~~~~~ 587 (608)
.+++|++.+.+.. ..+....+...+.... .+ .+.+-+ +.+++++++ ..+.|.|.......+.|
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~--~~~~l~-dw~l~~v~s~~s~dv~vl~~~~~~~~~ 338 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQH-HY--YLSYIE-EWDLVLAASAASTEVSILARQSDQINW 338 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCC-CE--EEEEEG-GGTEEEEEETTCSBCEEEEECTTSSCE
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCc-ce--eeehhc-cCCEEEEecCCCCceeEEEecCCCCcc
Confidence 3999999865321 1111111211122122 22 344557 456555554 55567777755433334
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.4e-17 Score=167.43 Aligned_cols=247 Identities=13% Similarity=0.080 Sum_probs=166.4
Q ss_pred CCCeEEEEEe--CCEEEEEeCCcEEEEEcC-CCceeeEecC-CCCCeEEEEEcCCC-e-E-EEEe-------------CC
Q 007306 324 KDSISCFALR--GSHLFSASGGKISIFSLE-TFQTLATFAN-PPPIATYFILLPQD-L-F-AFGF-------------DD 383 (608)
Q Consensus 324 ~~~v~~v~~s--~~~l~s~~d~~i~vwd~~-~~~~~~~~~~-~~~~v~~~~~~~~~-~-l-~~~~-------------~d 383 (608)
...+..++|+ +++|++++.+.|.+|++. +++....... ..+.+.+++|+|+| . + +++. .+
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 3467789999 788888883399999997 7776543321 11235568899999 5 3 3442 68
Q ss_pred CcEEEEeCC-CCceEEEee----CccccEEEEEEeCCCCEEEEEc-CCCcEEEEECC-CCceecccceeeee-ccCCCCc
Q 007306 384 SSILVHCPC-TKKTKAKLK----GHQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAV-GWKKLCSKFLHSFQ-TGLVPET 455 (608)
Q Consensus 384 ~~i~vwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~-~~~~~~~~~~~~~~-~~~~~~~ 455 (608)
+.+.+|++. +++....+. .+...+.+++|+|||+++++++ .++.|++||+. +++.. .+..+. ..+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~---~~~~~~~~~~g--- 192 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE---LVGSVDAPDPG--- 192 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE---EEEEEECSSTT---
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE---EeeeEecCCCC---
Confidence 899999997 465544433 2456799999999999887765 46899999998 54421 112111 1112
Q ss_pred cceEEEEEcCCCCEEEEE--eCCcEEEEECC--CCcee---eeecC-C----CCCC------CeEEEE-EecCCCEEEEE
Q 007306 456 TIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT---SQLVP-D----KMDL------PITYAT-YSCDGKCIYVS 516 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~--~~~~~---~~~~~-~----~~~~------~v~~~~-~s~~~~~l~sg 516 (608)
..+..++|+|+|++++++ .++.|.+|++. +++.. ..+.. . ++.. .+..++ |+|||++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 468899999999999884 46889999765 56542 12211 1 1111 488999 99999998877
Q ss_pred EcC-C-----eEEEEeCC-CCceeEEEeceeeccCCCcccccccEEEEEecC--CCCEEEEEeCC-CcEEEEeCCCC
Q 007306 517 CKS-G-----HVKVFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPL--EPNRIALGLTN-GRVHVIEPLES 583 (608)
Q Consensus 517 ~~d-g-----~i~iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~--d~~~las~s~D-g~v~iW~~~~~ 583 (608)
+.+ + .|.+|++. ++++........ .+ ..... .++|+|. |+++|++++.+ +.|.+|++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----~~-~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSP----TP-TSGGH--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEE----CS-SCCTT--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeee----cC-CCCcc--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 653 3 89999996 666443211000 11 11233 6889994 48899988864 89999998765
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.5e-17 Score=167.10 Aligned_cols=282 Identities=7% Similarity=0.014 Sum_probs=179.1
Q ss_pred EEEeecC--CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC-CCcceeeecccc
Q 007306 225 AVCAKSL--EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ-SNKQSLEEENVN 301 (608)
Q Consensus 225 l~~~~~d--~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~-~~~~~~~~~~~~ 301 (608)
++.|+.. +.|.+|+++.. .+.+..+.....+....+..++|+|||++|++++.+ .|.+|++. +++...
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~--~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~------ 75 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDE--KLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH------ 75 (365)
T ss_dssp EEEEESSSSCEEEEEEEETT--TTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE------
T ss_pred EEEEEccCCCcEEEEEEECC--CCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE------
Confidence 4455542 56888776421 233332211101134568899999999999999888 89999875 443210
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE--EEEE--------------eCCcEEEEEcC-CCceeeEec--
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH--LFSA--------------SGGKISIFSLE-TFQTLATFA-- 360 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~--l~s~--------------~d~~i~vwd~~-~~~~~~~~~-- 360 (608)
+.. .. .+ +.+.+++|+ |++ ++++ .++.+.+|++. +++....+.
T Consensus 76 ----~~~----------~~-~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~ 139 (365)
T 1jof_A 76 ----EAS----------HP-IG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY 139 (365)
T ss_dssp ----EEE----------EE-CC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE
T ss_pred ----eeE----------ee-cC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeE
Confidence 000 00 01 123446777 553 3343 36889999997 466554443
Q ss_pred --CCCCCeEEEEEcCCC-eEEEEe-CCCcEEEEeCC-CCceE--EEee--CccccEEEEEEeCCCCEEEEEcC-CCcEEE
Q 007306 361 --NPPPIATYFILLPQD-LFAFGF-DDSSILVHCPC-TKKTK--AKLK--GHQNRITCLAYSLSLNVLVSSGA-DAQLCV 430 (608)
Q Consensus 361 --~~~~~v~~~~~~~~~-~l~~~~-~d~~i~vwd~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~s~~~-d~~i~v 430 (608)
.+...+.+++|+||| .++++. .++.|++||+. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+
T Consensus 140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 219 (365)
T 1jof_A 140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEE
Confidence 245678999999999 777665 46799999998 67643 3333 23567899999999999877764 789999
Q ss_pred EECC--CCceec-ccceeeeeccCCCCcc------ceEEEE-EcCCCCEEEEE--eCC-----cEEEEECC-CCceeeee
Q 007306 431 WDAV--GWKKLC-SKFLHSFQTGLVPETT------IVNHIQ-FHPDQIHLLSI--HEG-----QIDVYEAP-TLNHTSQL 492 (608)
Q Consensus 431 wd~~--~~~~~~-~~~~~~~~~~~~~~~~------~v~~v~-~sp~~~~l~~~--~d~-----~i~iwd~~-~~~~~~~~ 492 (608)
|+++ +++... ...+..+..+...... .+..++ |+|||++|+++ .++ .|.+|++. +++.....
T Consensus 220 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~ 299 (365)
T 1jof_A 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee
Confidence 9875 333211 0112212211110001 478999 99999998874 333 89999996 56644311
Q ss_pred c-CCCCCCCeEEEEEec---CCCEEEEEEcC-CeEEEEeCCCCc
Q 007306 493 V-PDKMDLPITYATYSC---DGKCIYVSCKS-GHVKVFDTSTLE 531 (608)
Q Consensus 493 ~-~~~~~~~v~~~~~s~---~~~~l~sg~~d-g~i~iwd~~~~~ 531 (608)
. ...+...+..++|+| ||++|++++.+ +.|.+|++....
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 1 111234456789999 89999999875 899999998763
No 164
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=2.3e-18 Score=189.50 Aligned_cols=286 Identities=13% Similarity=0.021 Sum_probs=191.6
Q ss_pred eEeecCCCCeEEEeec---------CCeEEEeeccCCCCCCce---eeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCc
Q 007306 215 ESTSLPDADSAVCAKS---------LEKSVNLKLQLINEPSEC---RTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT 282 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~---------d~~i~iWd~~~~~~~~~~---~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~ 282 (608)
...|||||++|++++. ++.|++||+.+ ++. .. + ...+.+++|||||++||++. ++.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----g~~~~~~~--l-----~~~~~~~~~SPDG~~la~~~-~~~ 131 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----GEFVRGNE--L-----PRPIQYLCWSPVGSKLAYVY-QNN 131 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----TEECCSSC--C-----CSSBCCEEECSSTTCEEEEE-TTE
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----Ccccccee--c-----CcccccceECCCCCEEEEEE-CCe
Confidence 3479999999999886 78999999984 444 22 2 35688999999999999885 789
Q ss_pred EEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCC---------eEEEEEe--CCEEEEEe-CC-------
Q 007306 283 HKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDS---------ISCFALR--GSHLFSAS-GG------- 343 (608)
Q Consensus 283 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~v~~s--~~~l~s~~-d~------- 343 (608)
|++|++.++...... .+.....+.. ++... ..+++|+ |++|++++ |.
T Consensus 132 i~~~~~~~g~~~~l~---------~~~~~~~v~~-----g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~ 197 (719)
T 1z68_A 132 IYLKQRPGDPPFQIT---------FNGRENKIFN-----GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIA 197 (719)
T ss_dssp EEEESSTTSCCEECC---------CCCBTTTEEE-----SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEE
T ss_pred EEEEeCCCCCcEEEe---------cCCCcCCeEc-----ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEE
Confidence 999988776541110 0000000000 23222 2589999 88999887 52
Q ss_pred ---------------------------cEEEEEcCCCcee--------eEecCCCCCeEEEEEcCCC-eEEEEeCC----
Q 007306 344 ---------------------------KISIFSLETFQTL--------ATFANPPPIATYFILLPQD-LFAFGFDD---- 383 (608)
Q Consensus 344 ---------------------------~i~vwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~-~l~~~~~d---- 383 (608)
.|++||+.+++.. ..+.+|...+..++|+||+ .+++....
T Consensus 198 ~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~ 277 (719)
T 1z68_A 198 YSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNV 277 (719)
T ss_dssp EEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTE
T ss_pred eeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCe
Confidence 7889999988753 1233577788999999999 76664432
Q ss_pred CcEEEEe----CCCCceEEEe----eCccccEE-----EEEEeCCCCEEEE--EcCCC--cEEEEECCCCceecccceee
Q 007306 384 SSILVHC----PCTKKTKAKL----KGHQNRIT-----CLAYSLSLNVLVS--SGADA--QLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 384 ~~i~vwd----~~~~~~~~~~----~~~~~~v~-----~~~~~~~~~~l~s--~~~d~--~i~vwd~~~~~~~~~~~~~~ 446 (608)
..|.+|| +.+++....+ .+|...+. .+.|+|||+.++. ...+| .|.+||+.+++ ...
T Consensus 278 ~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~------~~~ 351 (719)
T 1z68_A 278 SVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN------AIQ 351 (719)
T ss_dssp EEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT------CEE
T ss_pred EEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc------eEe
Confidence 2488999 8888766555 46666666 7899999996554 44555 56677776633 121
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEE-EeC-----CcEEEEECCC--Cc-eeeeecC--CCCCCCeEEEEEecCCCEEEE
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVYEAPT--LN-HTSQLVP--DKMDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d-----~~i~iwd~~~--~~-~~~~~~~--~~~~~~v~~~~~s~~~~~l~s 515 (608)
+. .+. ..+..+.++ +++.++. +.+ +..++|.+.. +. ....+.. .++...+..+.|+||+++++.
T Consensus 352 lt-~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 352 IT-SGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYAL 426 (719)
T ss_dssp CS-CSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEE
T ss_pred cc-cCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEE
Confidence 22 222 357777777 8888777 543 6788887653 32 1223321 114567889999999988775
Q ss_pred EE-cC--CeEEEEeCCCCceeEEEe
Q 007306 516 SC-KS--GHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 516 g~-~d--g~i~iwd~~~~~~~~~~~ 537 (608)
.+ .+ ..+++||+.+++....+.
T Consensus 427 ~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 427 VCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp EECCBSSCEEEEECSSSCCEEEEEE
T ss_pred EcCCCCCCeEEEEECCCCCEEEEee
Confidence 43 33 578999998887655544
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=1.9e-18 Score=175.30 Aligned_cols=272 Identities=12% Similarity=0.053 Sum_probs=175.9
Q ss_pred eecCCCCeEEEeec-CCe--EEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 217 TSLPDADSAVCAKS-LEK--SVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 217 ~~s~dg~~l~~~~~-d~~--i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
.|||||++|++++. ++. |.+||+.+ ++...++ .+|...+..++|||||++|+.++.++.+.+||+.+++.
T Consensus 42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~----g~~~~lt---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNT----QVATQLT---EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTT----CEEEECC---CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEEcCCCCceEEEEeCCC----CceEEee---eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 69999999999987 674 77778763 5555432 23555555778999999999999999999998877654
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE--e--CCEEEEE----------------------e-CCcEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--R--GSHLFSA----------------------S-GGKIS 346 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s--~~~l~s~----------------------~-d~~i~ 346 (608)
. .++. .+...+....| + +.+++.. . +..|.
T Consensus 115 ~----------~~~~-------------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 115 N----------VVYQ-------------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp E----------EEEE-------------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred e----------eeee-------------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 1 1222 13333333333 3 5555532 2 36799
Q ss_pred EEEcCCCceeeEecCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEEeeCcc--ccEEEEEEeCCC
Q 007306 347 IFSLETFQTLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGHQ--NRITCLAYSLSL 416 (608)
Q Consensus 347 vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~ 416 (608)
+||+.+++.... ..+...+..+.|+| || .|+....+ ..|.++|+.++.... +..+. ..+..+.|+|||
T Consensus 172 ~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg 249 (388)
T 3pe7_A 172 RVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-VKTHAEGESCTHEFWVPDG 249 (388)
T ss_dssp EEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-SCCCCTTEEEEEEEECTTS
T ss_pred EEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-eeeCCCCcccccceECCCC
Confidence 999998865444 34566788999999 99 77766653 378888987665433 33333 357888999999
Q ss_pred CEEEEEcC-CC----cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE----------eCCcEEEE
Q 007306 417 NVLVSSGA-DA----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI----------HEGQIDVY 481 (608)
Q Consensus 417 ~~l~s~~~-d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~----------~d~~i~iw 481 (608)
+.|+..+. ++ .|++||+.+++.. .+. ...++.........+.|+|||+.|+.. .+..|++|
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~ 325 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENR---QLT-SMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVF 325 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEE---EEE-EECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceE---EEE-cCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEE
Confidence 97765443 22 3999999986532 121 111100000001123799999988862 24579999
Q ss_pred ECCCCceeeeecCCCCCC-----------CeEEEEEecCCCEEEEEEc-CCeEEEEeC
Q 007306 482 EAPTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGHVKVFDT 527 (608)
Q Consensus 482 d~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~sg~~-dg~i~iwd~ 527 (608)
|+.+++.. .+.. +.. .+.+++|+|||+.|+..+. +|...||.+
T Consensus 326 d~~~~~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 326 NMKNGTQH-RVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ETTTTEEE-EEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eccCCceE-Eecc--ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 99887653 3332 222 4778899999998887664 565555543
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.79 E-value=1.1e-16 Score=160.21 Aligned_cols=298 Identities=15% Similarity=0.111 Sum_probs=196.7
Q ss_pred CCCCeEEEee------cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeC----------CCcE
Q 007306 220 PDADSAVCAK------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQ----------TATH 283 (608)
Q Consensus 220 ~dg~~l~~~~------~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~----------dg~i 283 (608)
+++++++... .|+.|.+||..+ ++... +++. +..+ .++|||||+++++++. ++.|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t----~~~~~-~i~~--g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTN----GKFLG-MVPT--AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTT----CCEEE-EEEC--CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCC----CeEEE-EecC--CCCC--ceEECCCCCEEEEEEecccccccCCCCCEE
Confidence 4566666543 478999999874 33332 2433 3444 8999999999999863 5678
Q ss_pred EEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCceeeE
Q 007306 284 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTLAT 358 (608)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~---d~~i~vwd~~~~~~~~~ 358 (608)
.+||..+.+.... .....+. . .+......++++ |++|+++. ++.|.+||+.+++.+..
T Consensus 84 ~v~d~~t~~~~~~----------i~~~~~~-----~--~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 84 EVWDADKLTFEKE----------ISLPPKR-----V--QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp EEEETTTCCEEEE----------EEECTTB-----C--CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred EEEECcCCcEEEE----------EEcCccc-----c--ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 8888766554111 0000000 0 123456678998 88888876 37899999999988887
Q ss_pred -ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEE------eeCccccEEEEEEeCCCCEEEEEcCCCcE
Q 007306 359 -FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAK------LKGHQNRITCLAYSLSLNVLVSSGADAQL 428 (608)
Q Consensus 359 -~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~-~~~~~~------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i 428 (608)
+... ....+.+.|++ .+++.+.||.+.+|+... ++.... +.....++ .+.++|++..++..+.++.+
T Consensus 147 ~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v 223 (361)
T 2oiz_A 147 VTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNV 223 (361)
T ss_dssp EGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEE
T ss_pred EecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeE
Confidence 5532 22335677877 788888999999998865 554421 22222222 33446778788888889999
Q ss_pred EEEECCCCceecccceee-----eeccCCCCccceEEEEEcCCCCEEEEE-e-----------CCcEEEEECCCCceeee
Q 007306 429 CVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H-----------EGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~v~~sp~~~~l~~~-~-----------d~~i~iwd~~~~~~~~~ 491 (608)
.++|+............. ...+..+ .....++|+|+++.+++. . .+.|.+||+.+++.+.+
T Consensus 224 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p--~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 224 YSADFSGDEVKVDGPWSLLNDEDKAKNWVP--GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEECSSSSCEEEEEEESCCHHHHHTTCEE--CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred EEEEecCCCceecccccccCcccccccccc--CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 999997643211111100 0000000 111237899998888874 3 24799999999999999
Q ss_pred ecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC--ceeEEEeceeeccCCCcccccccEEEEEecCCCC
Q 007306 492 LVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL--ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 564 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 564 (608)
+..+ . +.+++|+|||++|++++. +.|.+||..++ +.+..+... | . ....++++| +|.
T Consensus 302 i~~~--~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~-----G--~---~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 302 IPGR--D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA-----A--E---ASLQVQFHP-VGG 360 (361)
T ss_dssp EECT--T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS-----C--S---SEEEEEECC-CSC
T ss_pred EecC--C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC-----C--C---CcEEEEecC-CCC
Confidence 8763 3 899999999999998887 99999999999 887776322 2 2 234789999 553
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=2.9e-17 Score=180.91 Aligned_cols=250 Identities=12% Similarity=0.141 Sum_probs=167.5
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
.....+++|+|||++++++ ||+|++|++.+++.. .+....+. ..+......++|| |++
T Consensus 16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~----------~~~~~~~~--------~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS----------VFLENSTF--------DEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE----------EEECTTTT--------TTCCSCCCEEEECTTSSE
T ss_pred cccccccEECCCCcEEEEc--CCcEEEEECCCCceE----------EEEechhh--------hhhcccccceEECCCCCE
Confidence 3456689999999988886 999999988777641 11111000 0122233457889 888
Q ss_pred EEEEe-C---------CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-eeCcc
Q 007306 337 LFSAS-G---------GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQ 404 (608)
Q Consensus 337 l~s~~-d---------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~ 404 (608)
|+.++ + +.+.+||+.+++.. .+..+...+...+||||| .|+.+. ++.|++||+.+++..+. ..++.
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~ 153 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKE 153 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBT
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCc
Confidence 88888 4 56779999998765 466677889999999999 888874 78999999998875542 22332
Q ss_pred ccE-----------------EEEEEeCCCCEEEEEcCCC------------------------------------cEEEE
Q 007306 405 NRI-----------------TCLAYSLSLNVLVSSGADA------------------------------------QLCVW 431 (608)
Q Consensus 405 ~~v-----------------~~~~~~~~~~~l~s~~~d~------------------------------------~i~vw 431 (608)
..+ ..+.|||||+.|+.++.|. +|++|
T Consensus 154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~ 233 (740)
T 4a5s_A 154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV 233 (740)
T ss_dssp TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred cceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence 222 3589999999999875332 47778
Q ss_pred ECCC---Cceecccceeeee---ccCCCCccceEEEEEcCCCCEEEE-EeC----CcEEEEECCCCc----ee--eeecC
Q 007306 432 DAVG---WKKLCSKFLHSFQ---TGLVPETTIVNHIQFHPDQIHLLS-IHE----GQIDVYEAPTLN----HT--SQLVP 494 (608)
Q Consensus 432 d~~~---~~~~~~~~~~~~~---~~~~~~~~~v~~v~~sp~~~~l~~-~~d----~~i~iwd~~~~~----~~--~~~~~ 494 (608)
|+.+ ++......+. .. .++. ..+..++|+|||+.++. ... ..|++||+.+++ +. ..+..
T Consensus 234 d~~~~~~~~~~~~~~l~-~~~~~~~~~---~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~ 309 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQIT-APASMLIGD---HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIE 309 (740)
T ss_dssp ETTSCCSSSCCCEEEEC-CCHHHHTSC---EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEE
T ss_pred ECCCCCCCCcceEEEec-CCccCCCCC---eEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeee
Confidence 8876 5211111111 10 1244 57899999999997765 322 369999999887 32 22211
Q ss_pred CCCCCCeE-----EEEEecCCCEEE-EEEcC---CeEEEEeCCCCceeE
Q 007306 495 DKMDLPIT-----YATYSCDGKCIY-VSCKS---GHVKVFDTSTLELRC 534 (608)
Q Consensus 495 ~~~~~~v~-----~~~~s~~~~~l~-sg~~d---g~i~iwd~~~~~~~~ 534 (608)
..+...+. ...|+|||+.|+ ..+.+ ..|++||..+++...
T Consensus 310 ~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 310 MSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp ECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred ccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 22344443 688999999887 66543 478999998776543
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=1.2e-17 Score=169.76 Aligned_cols=280 Identities=11% Similarity=0.040 Sum_probs=177.8
Q ss_pred cEEEEEEeeCCCEEEEEeCC-C--cEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 261 RVVRLIYSHSGDFLVALTQT-A--THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~s~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
.+.+++|||||++|+..... + .+.+|+. .++....... ++......+.|+ |+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~---------------------~~~~~~~l~~--~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNL---------------------ETQQAVQLTE--GKGDNTFGGFISTDER 93 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEET---------------------TTTEEEECCC--SSCBCTTTCEECTTSS
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEEC---------------------CCCcEEEeec--CCCCccccceECCCCC
Confidence 36778999999998877653 4 4544444 4444333211 122223336788 88
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEE-------------------EEEcCCC-eEEEE-----eCCCcEEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATY-------------------FILLPQD-LFAFG-----FDDSSILVH 389 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~-~l~~~-----~~d~~i~vw 389 (608)
.|+.++ ++.|.+||+.+++.......+...... +.|+|++ .++.+ ..+..|++|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 898888 789999999988876666544442222 3457777 44433 456789999
Q ss_pred eCCCCceEEEeeCccccEEEEEEeC-CCCEEEEEcCC------CcEEEEECCCCceecccceeeeeccCCCCccceEEEE
Q 007306 390 CPCTKKTKAKLKGHQNRITCLAYSL-SLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 462 (608)
Q Consensus 390 d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 462 (608)
|+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+.+++ ...+...... ..+..++
T Consensus 174 d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~~~~~~--~~~~~~~ 244 (396)
T 3c5m_A 174 DIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN------VRKIKEHAEG--ESCTHEF 244 (396)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC------CEESSCCCTT--EEEEEEE
T ss_pred ECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc------eeEeeccCCC--ccccceE
Confidence 99988765544 4667789999999 78877766543 468888887632 1112221110 3578899
Q ss_pred EcCCCCEEEE-EeC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEEE----------------cC
Q 007306 463 FHPDQIHLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVSC----------------KS 519 (608)
Q Consensus 463 ~sp~~~~l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~----------------~d 519 (608)
|+|+|++|+. +.+ +.|++||+.+++....... . ... +.|+| ||+++++++ .+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 9999998776 433 3499999988875433322 1 133 89999 999888765 34
Q ss_pred CeEEEEeCCCCceeEEEeceeecc---CCCcccccccEEEEEecCCCCEEEEEeC-CCcEEEEeCC
Q 007306 520 GHVKVFDTSTLELRCQINLTAYAQ---PGTISLELYPLVIAAHPLEPNRIALGLT-NGRVHVIEPL 581 (608)
Q Consensus 520 g~i~iwd~~~~~~~~~~~~~~~~~---~g~~~~~v~~~~v~~sp~d~~~las~s~-Dg~v~iW~~~ 581 (608)
+.|++||+.+++... +..+.... .+ ........++|+| |+..|+.++. ++...||.+.
T Consensus 320 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~--~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQK-LCKHSTSWDVLDG--DRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CEEEEEETTTTBCCE-EEECCCCCCCBTT--BSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred CcEEEEecccCceEE-ccCCCCccccccc--cccCCCCCceEcc-CCCeEEEEecCCCCceEEEEE
Confidence 789999999887543 32210000 00 0000123678999 7888877764 5655555543
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=8e-16 Score=148.79 Aligned_cols=239 Identities=10% Similarity=0.068 Sum_probs=174.6
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecC------CCCCeEEEEE-cCCC-eEEEEeC-CCcEEEE
Q 007306 322 DPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN------PPPIATYFIL-LPQD-LFAFGFD-DSSILVH 389 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~------~~~~v~~~~~-~~~~-~l~~~~~-d~~i~vw 389 (608)
++-....+++++ ++++++.. ++.|.+||.. ++.+..+.. +...+..+++ .+++ .+++... ++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678899998 66666666 8999999987 666666642 3356789999 4677 5555533 8899999
Q ss_pred eCCCCceEEEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeec-cCCCCccceEEEEEcCCC
Q 007306 390 CPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQ 467 (608)
Q Consensus 390 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~~ 467 (608)
| .+++.+..+.. +...+.+++++|+|+++++...++.|.+||... ..+..+.. ++. ..+..++++|+|
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------~~~~~~~~~~~~---~~p~~i~~~~~g 175 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------NVLHKFGCSKHL---EFPNGVVVNDKQ 175 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------CEEEEEECTTTC---SSEEEEEECSSS
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC------CEEEEeCCCCcc---CCcEEEEECCCC
Confidence 9 56777766643 445789999999999888888889999999754 22221211 222 468899999999
Q ss_pred CEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-eEEEEeCCCCceeEEEeceeeccCC
Q 007306 468 IHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-HVKVFDTSTLELRCQINLTAYAQPG 545 (608)
Q Consensus 468 ~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~g 545 (608)
+++++. .++.|++||. +++.+..+...++...+..++++++|+++++...++ .|++|+. +++.+..+...
T Consensus 176 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~------ 247 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK------ 247 (286)
T ss_dssp EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES------
T ss_pred CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc------
Confidence 877764 6889999998 566666665433346789999999999888888776 9999995 46656555432
Q ss_pred CcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 546 TISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 546 ~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
.....+.+++++| ++.++++ +.|++|++|++...
T Consensus 248 --~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 --VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp --SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred --CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 1112345899999 7887777 57999999998654
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.75 E-value=2.2e-15 Score=145.67 Aligned_cols=243 Identities=10% Similarity=0.092 Sum_probs=176.0
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe---C
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR---G 334 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s---~ 334 (608)
+-..+.+++++|+|+++++.+.++.|.+|+...... ..+... + ...++...+.++++. +
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-----------~~~~~~-~------~~~~~~~~p~~i~~~~~~g 89 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-----------FQFGEC-G------KRDSQLLYPNRVAVVRNSG 89 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-----------EEECCB-S------SSTTCBSSEEEEEEETTTT
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-----------EEeccc-C------CCcccccCceEEEEEcCCC
Confidence 567899999999999888888899999998653211 111100 0 001345678899994 4
Q ss_pred CEEEEEe--CCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee--CccccEE
Q 007306 335 SHLFSAS--GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRIT 408 (608)
Q Consensus 335 ~~l~s~~--d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~ 408 (608)
.++++.. ++.|.+|| .+++.+..+. .+...+.+++++|+| .+++...++.|.+||.. ++.+..+. .+...+.
T Consensus 90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~ 167 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN 167 (286)
T ss_dssp EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcE
Confidence 4555543 68999999 5677777665 334578899999999 77777788999999964 56665554 3445789
Q ss_pred EEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee-ccCCCCccceEEEEEcCCCCEEEEE-eCC-cEEEEECCC
Q 007306 409 CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI-HEG-QIDVYEAPT 485 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~l~~~-~d~-~i~iwd~~~ 485 (608)
+++++|+|+++++...++.|++||... ..+.++. .++. ..+..++++|+|+++++. .++ .|.+||. +
T Consensus 168 ~i~~~~~g~l~v~~~~~~~i~~~~~~g------~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~ 237 (286)
T 1q7f_A 168 GVVVNDKQEIFISDNRAHCVKVFNYEG------QYLRQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-D 237 (286)
T ss_dssp EEEECSSSEEEEEEGGGTEEEEEETTC------CEEEEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-T
T ss_pred EEEECCCCCEEEEECCCCEEEEEcCCC------CEEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCCEEEEEECC-C
Confidence 999999999888888899999999854 2222121 1222 367899999999888875 454 9999996 6
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 486 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
++.+..+........+.+++++|+|+++++ +.|+.|++|++....
T Consensus 238 g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 238 GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 777777765433445889999999987776 679999999986543
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=4.9e-16 Score=153.52 Aligned_cols=241 Identities=15% Similarity=0.129 Sum_probs=179.5
Q ss_pred CCCeEEEEEe--CCEEEEEe-C------------------------CcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC
Q 007306 324 KDSISCFALR--GSHLFSAS-G------------------------GKISIFSLETFQTLATFA-NPPPIATYFILLPQD 375 (608)
Q Consensus 324 ~~~v~~v~~s--~~~l~s~~-d------------------------~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 375 (608)
-..+.+++++ |+++++.. + ++|.+||..+++.+..+. .+......++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4678999999 77777776 5 379999999999877665 344578899999999
Q ss_pred -eEEEEeCCCcEEEEeCCCCc-eEEEe---------eCccccEEEEEEeC-CCCEEEEEc-CCCcEEEEECCCCceeccc
Q 007306 376 -LFAFGFDDSSILVHCPCTKK-TKAKL---------KGHQNRITCLAYSL-SLNVLVSSG-ADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 376 -~l~~~~~d~~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~s~~-~d~~i~vwd~~~~~~~~~~ 442 (608)
++++...++.|++||..... .+..+ .++......++++| ++.++++.+ .++.|++||... .
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~----- 176 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K----- 176 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C-----
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C-----
Confidence 88888889999999986542 44444 23445789999999 888888886 699999999543 2
Q ss_pred ceeeeec---------cCCCCccceEEEEEcCC-CCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCC
Q 007306 443 FLHSFQT---------GLVPETTIVNHIQFHPD-QIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGK 511 (608)
Q Consensus 443 ~~~~~~~---------~~~~~~~~v~~v~~sp~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 511 (608)
.+..+.. ++. .....++++|+ +.++++. .++.|++||..+++.+..+....+...+..++|+| +.
T Consensus 177 ~~~~~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~ 252 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF 252 (329)
T ss_dssp EEEEECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE
T ss_pred EEEEeccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE
Confidence 2221110 111 24789999999 5555554 67899999998899988886655677899999999 43
Q ss_pred EEEEE-------EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 512 CIYVS-------CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 512 ~l~sg-------~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
.+.+. ..++.|++|+..+++.+..+... .+ ....+..++++| ++.++++...++.|++|++..
T Consensus 253 ~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 33333 33458999999999988876421 01 122355899999 788999999999999999864
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=2.9e-14 Score=149.77 Aligned_cols=326 Identities=12% Similarity=0.073 Sum_probs=217.2
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC--CCccee
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ--SNKQSL 295 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~--~~~~~~ 295 (608)
..|++..+++...++.|.++|..+ .+.... ++ ....+..+.|||||+++++++.|+.|.+||+. +.+.
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t----~~v~~~-i~---~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-- 232 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGST----YEIKTV-LD---TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-- 232 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTT----CCEEEE-EE---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--
T ss_pred cCCCceEEEEeCCCCeEEEEECCC----CeEEEE-Ee---CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE--
Confidence 335556778888899999999984 433321 22 24467799999999999999999999999874 4332
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe------CCEEEEEe--CCcEEEEEcCCCceeeEecCC-----
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR------GSHLFSAS--GGKISIFSLETFQTLATFANP----- 362 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s------~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~----- 362 (608)
+.... .......++|+ |+++++++ +++|.++|..+.+.+..+...
T Consensus 233 -------------------v~~i~---~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~ 290 (567)
T 1qks_A 233 -------------------VAEIK---IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD 290 (567)
T ss_dssp -------------------EEEEE---CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTT
T ss_pred -------------------eEEEe---cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccc
Confidence 11111 11234567776 66887777 799999999999988876522
Q ss_pred ------CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE--EeeCccccEEEEEEeCCCCEEEEEc-CCCcEEEE
Q 007306 363 ------PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA--KLKGHQNRITCLAYSLSLNVLVSSG-ADAQLCVW 431 (608)
Q Consensus 363 ------~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~-~d~~i~vw 431 (608)
...+..+..++++ .++....+|.|.++|..+.+... .+. ......++.|+|+|++++++. .++.|.++
T Consensus 291 ~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 291 EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 2267788889987 66666778999999987754322 222 334567889999999876655 57899999
Q ss_pred ECCCCceecccceeeeec-cCCCCccceEEEEEcCCCCEEE-EE--eCCcEEEEECCC-------CceeeeecCCCCCCC
Q 007306 432 DAVGWKKLCSKFLHSFQT-GLVPETTIVNHIQFHPDQIHLL-SI--HEGQIDVYEAPT-------LNHTSQLVPDKMDLP 500 (608)
Q Consensus 432 d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~~l~-~~--~d~~i~iwd~~~-------~~~~~~~~~~~~~~~ 500 (608)
|+.+++.... +.. +..|+.+.-..+ ++|++..+. ++ .++.|.++|..+ .+.++++... ...
T Consensus 370 D~~t~kl~~~-----i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~--g~g 441 (567)
T 1qks_A 370 DTKEGKLVAI-----EDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL--GGG 441 (567)
T ss_dssp ETTTTEEEEE-----EECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSC
T ss_pred ECCCCcEEEE-----EeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC--CCC
Confidence 9998654332 222 222211222222 688855554 45 468999999987 5677777653 233
Q ss_pred eEEEEEecCCCEEEEEEc-------CCeEEEEeCCCC-----cee-EEEeceeeccCCCcccccccEEEEEecCCCCEEE
Q 007306 501 ITYATYSCDGKCIYVSCK-------SGHVKVFDTSTL-----ELR-CQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 567 (608)
Q Consensus 501 v~~~~~s~~~~~l~sg~~-------dg~i~iwd~~~~-----~~~-~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 567 (608)
-..+..+|+++++++... .+.|.++|+.+. ... ..+.......-+ ....++..+.|+| +|..+.
T Consensus 442 ~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~G~~~~ 518 (567)
T 1qks_A 442 SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT--EGQPRVVQGEFNK-DGTEVW 518 (567)
T ss_dssp CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC--SSCCEEEEEEECT-TSSEEE
T ss_pred CEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccC--CCCcceEeeeECC-CCCEEE
Confidence 344678999999998763 359999999876 211 222210000001 1123355899999 677665
Q ss_pred EEe-----CCCcEEEEeCCCCcccc
Q 007306 568 LGL-----TNGRVHVIEPLESEVEW 587 (608)
Q Consensus 568 s~s-----~Dg~v~iW~~~~~~~~~ 587 (608)
.+. .++.|.|+|..+.+.+-
T Consensus 519 ~s~~~~~~~~~~i~v~D~~t~~~~~ 543 (567)
T 1qks_A 519 FSVWNGKDQESALVVVDDKTLELKH 543 (567)
T ss_dssp EEEECCTTSCCEEEEEETTTTEEEE
T ss_pred EEeecCCCCCCcEEEEECCCceEEE
Confidence 553 37999999999987643
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=7.3e-16 Score=167.91 Aligned_cols=283 Identities=9% Similarity=-0.044 Sum_probs=178.9
Q ss_pred EeecCCCCeEEEe--ecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEE---------EEEEe--eCCCE-EEEEeC-C
Q 007306 216 STSLPDADSAVCA--KSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVV---------RLIYS--HSGDF-LVALTQ-T 280 (608)
Q Consensus 216 ~~~s~dg~~l~~~--~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~---------~~~fs--p~g~~-l~s~s~-d 280 (608)
..+++++.+++.. +.++...||.... .+.... +.. |...+. ...|+ |||++ |+.++. +
T Consensus 29 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~--l~~--~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 29 VGAVGDEVWWVAPRPAEAGRATLVRRRA---DGAEES--ALP--APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp EEEETTEEEEEEEETTTTTEEEEEEECT---TSCEEE--SSC--TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred eEEcCCeEEEEecCcccCCcEEEEEECC---CCCcce--eCC--CCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 3678777677776 5588999999642 233333 322 555555 56666 99998 776554 3
Q ss_pred CcEEEEecCCCcceeeecccceeeEEeeCCC-Ceeeecccc--CCCCCCeEEEEEe--CCEEEEEe-C----------Cc
Q 007306 281 ATHKLWKWQSNKQSLEEENVNMESQLYQPSS-KLVMTNDIA--ADPKDSISCFALR--GSHLFSAS-G----------GK 344 (608)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~v~~v~~s--~~~l~s~~-d----------~~ 344 (608)
..|.+|+.... + +...+.... ..|...+.+++|+ |+.|++++ + ..
T Consensus 102 ~~l~~~~~~~~-------------------g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 102 QRLYAFEPDAP-------------------GGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CCEEEECTTST-------------------TCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred CeEEEEcCCCC-------------------CCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 44544443300 1 111111100 0156678899999 88888888 6 58
Q ss_pred EEEEEcCC------CceeeEec-CCCCCeEEEEEcCCC-eEEEEeCC--------CcEEEEeCC-CC---ceEEEeeCcc
Q 007306 345 ISIFSLET------FQTLATFA-NPPPIATYFILLPQD-LFAFGFDD--------SSILVHCPC-TK---KTKAKLKGHQ 404 (608)
Q Consensus 345 i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d--------~~i~vwd~~-~~---~~~~~~~~~~ 404 (608)
|.+||+.+ ++. ..+. .+...+..++|+||| .|+.++.+ ..|++||+. ++ +......+|.
T Consensus 163 i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~ 241 (662)
T 3azo_A 163 LAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE 241 (662)
T ss_dssp EEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT
T ss_pred EEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC
Confidence 99999987 554 4454 555677889999999 88877754 379999999 57 4444444567
Q ss_pred ccEEEEEEeCCCCEEEEEcCCC--cEEEEECCCCceecccceeeeeccCCCCc-----cceEEEEEcCCCCEEEEEeCCc
Q 007306 405 NRITCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPET-----TIVNHIQFHPDQIHLLSIHEGQ 477 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~v~~sp~~~~l~~~~d~~ 477 (608)
..+..+.|+|||+++++++.++ .|.+||+.+++.. . +..++.... ..+.+++|+|++++++++.++.
T Consensus 242 ~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~-----~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~ 315 (662)
T 3azo_A 242 EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT-----Q-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGA 315 (662)
T ss_dssp BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE-----E-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSS
T ss_pred ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee-----e-cccccccccCccccccCceEeEeCCCEEEEEEEcCc
Confidence 8899999999999888888888 5666666554321 1 222221000 0156789999999888853388
Q ss_pred EEEE--ECCCCceeeeecCCCCCCCeEEEEEecCCCE--EEEEEcCC--eEEEEeCCCCceeEE
Q 007306 478 IDVY--EAPTLNHTSQLVPDKMDLPITYATYSCDGKC--IYVSCKSG--HVKVFDTSTLELRCQ 535 (608)
Q Consensus 478 i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~sg~~dg--~i~iwd~~~~~~~~~ 535 (608)
++|| |..+++ +..+.. +...+..+ ++++++. +++++.+. .|++||+.+++....
T Consensus 316 ~~l~~~d~~~~~-~~~l~~--~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 316 AVLGILDPESGE-LVDAAG--PWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp CEEEEEETTTTE-EEECCS--SCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCc-EEEecC--CCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 8888 665555 455543 35566665 1444443 33445443 566777778775443
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.72 E-value=2.3e-16 Score=160.20 Aligned_cols=278 Identities=8% Similarity=-0.003 Sum_probs=173.5
Q ss_pred eecCCCCeEEEeecC---CeEEEeeccCCCCCCceeeEeecCCCCCCc-EEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 217 TSLPDADSAVCAKSL---EKSVNLKLQLINEPSECRTLLLPDNSFGGR-VVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d---~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~-V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
.|||||++|+..... ..|.+||+.+ ++...+ .. +... ...+.|||||++|+.++.++.+.+|++.+++
T Consensus 42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~----~~~~~l--~~--~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNRNYYLLNLET----QQAVQL--TE--GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE 113 (396)
T ss_dssp CBCTTSCEEEEEECTTSSCEEEEEETTT----TEEEEC--CC--SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred cCCCCCCEEEEEEecCCCceEEEEECCC----CcEEEe--ec--CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence 699999998887543 4688888873 444432 11 2233 3347899999999999999999999987765
Q ss_pred ceeeecccceeeEEeeCCCC-----eeeeccccCCCCCCeEE-----EEEe--CCEEEEE-----e-CCcEEEEEcCCCc
Q 007306 293 QSLEEENVNMESQLYQPSSK-----LVMTNDIAADPKDSISC-----FALR--GSHLFSA-----S-GGKISIFSLETFQ 354 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~-----v~~s--~~~l~s~-----~-d~~i~vwd~~~~~ 354 (608)
.... .....+ ..+... ....... +.|+ ++.++.+ . +..|.+||+.+++
T Consensus 114 ~~~~----------~~~~~~~~~~g~~l~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (396)
T 3c5m_A 114 EQVI----------YTVDEEWKGYGTWVANS----DCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE 179 (396)
T ss_dssp EEEE----------EECCTTEEEEEEEEECT----TSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC
T ss_pred cEEE----------EecccccCCCCCEEEec----cCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc
Confidence 4211 111100 000000 0000000 1233 3333322 3 5689999999887
Q ss_pred eeeEecCCCCCeEEEEEcC-CC-eEEEEeCC------CcEEEEeCCCCceEEEeeCc-cccEEEEEEeCCCCEEEEEcCC
Q 007306 355 TLATFANPPPIATYFILLP-QD-LFAFGFDD------SSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSGAD 425 (608)
Q Consensus 355 ~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d------~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d 425 (608)
..... .+...+..+.|+| ++ .|+..+.+ ..|.+||+.+++........ ...+..++|+|+|+.|+.++.+
T Consensus 180 ~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 180 LEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp EEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred EEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecC
Confidence 65554 4566788999999 77 66665543 46899998766544333321 3357889999999987776543
Q ss_pred -----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC-CCCEEEEEe-----------------CCcEEEEE
Q 007306 426 -----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP-DQIHLLSIH-----------------EGQIDVYE 482 (608)
Q Consensus 426 -----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~~~-----------------d~~i~iwd 482 (608)
+.|++||+.+++.. .+. .. .... +.|+| +|++++++. +..|++||
T Consensus 259 ~~~~~~~l~~~d~~~g~~~---~l~---~~-----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 259 KGQTDRVIYKANPETLENE---EVM---VM-----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp TTTCCEEEEEECTTTCCEE---EEE---EC-----CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CCCccceEEEEECCCCCeE---Eee---eC-----CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 44999999875421 111 11 1123 88999 999888632 36799999
Q ss_pred CCCCceeeeecCCCCCC-----------CeEEEEEecCCCEEEEEEc-CCe--EEEEeCCCCce
Q 007306 483 APTLNHTSQLVPDKMDL-----------PITYATYSCDGKCIYVSCK-SGH--VKVFDTSTLEL 532 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~sg~~-dg~--i~iwd~~~~~~ 532 (608)
+.+++.. .+... .. .+..++|+|||+.|+.++. ++. |+++++.++..
T Consensus 327 ~~~~~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 327 TKAKSAQ-KLCKH--STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp TTTTBCC-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred cccCceE-EccCC--CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence 9877653 33321 22 2566889999999887765 444 55555555543
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=9.1e-16 Score=167.12 Aligned_cols=283 Identities=12% Similarity=0.006 Sum_probs=182.1
Q ss_pred CCCcEEEEEEeeCCCEEEEE--eCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeE-------
Q 007306 258 FGGRVVRLIYSHSGDFLVAL--TQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS------- 328 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~--s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------- 328 (608)
|...|..++|++++-++++. +.++...||....+.. ..+.. .+...+.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~l~---~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA--------------------EESAL---PAPWNVRNRVFEYS 78 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC--------------------EEESS---CTTCCBCCCGGGTC
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC--------------------cceeC---CCCccccccccccC
Confidence 78899999999887777776 5578899987532221 11111 1323333
Q ss_pred --EEEEe----CCE-EEEEeC--CcEEEEEcC--CCceeeEecC-----CCCCeEEEEEcCCC-eEEEEeCC--------
Q 007306 329 --CFALR----GSH-LFSASG--GKISIFSLE--TFQTLATFAN-----PPPIATYFILLPQD-LFAFGFDD-------- 383 (608)
Q Consensus 329 --~v~~s----~~~-l~s~~d--~~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~-~l~~~~~d-------- 383 (608)
...|+ |+. |+.+++ ..|.++++. .......+.. +...+..++|+||| .|++++.+
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 34343 677 776663 566666665 2034445554 56678899999999 88888776
Q ss_pred --CcEEEEeCCC------CceEEEee-CccccEEEEEEeCCCCEEEEEcCC--------CcEEEEECC-CCceeccccee
Q 007306 384 --SSILVHCPCT------KKTKAKLK-GHQNRITCLAYSLSLNVLVSSGAD--------AQLCVWDAV-GWKKLCSKFLH 445 (608)
Q Consensus 384 --~~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d--------~~i~vwd~~-~~~~~~~~~~~ 445 (608)
..|++||+.+ ++.. .+. .+...+..++|+|||++|+.++.+ ..|++||+. ++... ...
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~---~~~ 234 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA---DTR 234 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE---EEE
T ss_pred ceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc---ccE
Confidence 5899999988 5543 444 555678889999999999987755 379999998 44211 122
Q ss_pred eeeccCCCCccceEEEEEcCCCCEEEEE-eCC--cEEEEECCCCceeeeecCCCCCCC--------eEEEEEecCCCEEE
Q 007306 446 SFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEAPTLNHTSQLVPDKMDLP--------ITYATYSCDGKCIY 514 (608)
Q Consensus 446 ~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~--------v~~~~~s~~~~~l~ 514 (608)
.+..++. ..+..++|+|||++++++ .++ .|++||..+++....... +... +..++|+|++++++
T Consensus 235 ~l~~~~~---~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~ 309 (662)
T 3azo_A 235 TLLGGPE---EAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAV 309 (662)
T ss_dssp EEEEETT---BCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred EeCCCCC---ceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEE
Confidence 2333444 578999999999966665 556 677777766765433321 1111 56789999999999
Q ss_pred EEEcCCeEEEE--eCCCCceeEEEeceeeccCCCcccccccEEE-EEecCCCCEEEEEeCCC--cEEEEeCCCCcc
Q 007306 515 VSCKSGHVKVF--DTSTLELRCQINLTAYAQPGTISLELYPLVI-AAHPLEPNRIALGLTNG--RVHVIEPLESEV 585 (608)
Q Consensus 515 sg~~dg~i~iw--d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v-~~sp~d~~~las~s~Dg--~v~iW~~~~~~~ 585 (608)
+++. +.++|| |..+++ ...+. ++ ...+. .+ ++++ +.-++++++.+. .|.+|++.+++.
T Consensus 310 ~~~~-~~~~l~~~d~~~~~-~~~l~-------~~-~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGE-LVDAA-------GP-WTEWA--ATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEBS-SSCEEEEEETTTTE-EEECC-------SS-CCEEE--EEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEc-CccEEEEEECCCCc-EEEec-------CC-CCeEE--EEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce
Confidence 9998 999999 555565 44443 22 22233 45 4444 333444455554 455566666654
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.72 E-value=3.6e-15 Score=147.30 Aligned_cols=260 Identities=11% Similarity=0.004 Sum_probs=180.0
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee---ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE---EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-- 333 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-- 333 (608)
-+.+.+++++|+|+++++.+.++.+.+++......... .......+.+||..++.+....- .++-.....++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CCccCCceEEEECCC
Confidence 56899999999999988888886544433322211100 00011235677777776654322 1345678899999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCc-eeeEe---------cCCCCCeEEEEEcC-CC-eEEEEe-CCCcEEEEeCCCCceEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQ-TLATF---------ANPPPIATYFILLP-QD-LFAFGF-DDSSILVHCPCTKKTKAK 399 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~-~l~~~~-~d~~i~vwd~~~~~~~~~ 399 (608)
|+++++.. ++.|++||..... .+..+ ..+......++++| ++ .+++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 77666666 7999999986442 45555 23344688999999 67 666665 689999999 55777766
Q ss_pred eeC----------ccccEEEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeee-ccCCCCccceEEEEEcCCC
Q 007306 400 LKG----------HQNRITCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-TGLVPETTIVNHIQFHPDQ 467 (608)
Q Consensus 400 ~~~----------~~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~sp~~ 467 (608)
+.. +-.....++++|+ +.++++...++.|++||..+++. +.++. ..+. ..+..++++| +
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~-----~~~~~~~~~~---~~~~~~~~~p-g 251 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF-----VREIKHASFG---RNVFAISYIP-G 251 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----EEEECCTTTT---TCEEEEEEET-T
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE-----EEEEeccccC---CCcceeeecC-C
Confidence 642 2234889999998 77788888899999999986443 22121 1222 4678999999 4
Q ss_pred CEEEE-E-------eCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 468 IHLLS-I-------HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 468 ~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
..+.+ + .+..|++||..+++.+..+.. ..+...+..++++|+|.++++...++.|++|++..
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 33333 2 234899999999998888742 13467799999999998888888899999999764
No 177
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=3.6e-15 Score=147.07 Aligned_cols=241 Identities=10% Similarity=0.044 Sum_probs=172.9
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee
Q 007306 325 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 401 (608)
Q Consensus 325 ~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~ 401 (608)
.....+.+. ++..++.. ++.|.+||..+++.+.++. .......+++++++ .+++...++.|.+||+.+++....+.
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 446778888 54555555 7999999999999988885 34667899999999 55555589999999999998887765
Q ss_pred Ccc-----ccEEEEEEeCCCCEEEEEc-CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-e
Q 007306 402 GHQ-----NRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-H 474 (608)
Q Consensus 402 ~~~-----~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~ 474 (608)
... .....+++ .+++.+++.. .++.|.++|..+++.. .++..+ .....++++|+|++++++ .
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~-----~~i~~g-----~~p~~i~~~~dG~l~v~~~~ 191 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVV-----DELTIG-----IQPTSLVMDKYNKMWTITDG 191 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEE-----EEEECS-----SCBCCCEECTTSEEEEEBCC
T ss_pred cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEE-----EEEEcC-----CCccceEEcCCCCEEEEECC
Confidence 432 14556777 3444444443 4899999999985432 222222 234578999999977774 3
Q ss_pred C----------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccC
Q 007306 475 E----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 544 (608)
Q Consensus 475 d----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 544 (608)
+ +.|.++|..+++....+..+. ......++|+|+++.|+++.. .|++||..+++..... +...
T Consensus 192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~~ 264 (328)
T 3dsm_A 192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLEF 264 (328)
T ss_dssp BCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBCC
T ss_pred CccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eecC
Confidence 3 689999999998877775431 346889999999999988754 8999999988763211 1110
Q ss_pred CCcccccccEEEEEecCCCCEEEEE----eCCCcEEEEeCCCCcccccc
Q 007306 545 GTISLELYPLVIAAHPLEPNRIALG----LTNGRVHVIEPLESEVEWGK 589 (608)
Q Consensus 545 g~~~~~v~~~~v~~sp~d~~~las~----s~Dg~v~iW~~~~~~~~~~~ 589 (608)
+ . -.+..++++|+++.++++. ..++.|.+|++. ++..+..
T Consensus 265 ~--~--~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 265 R--D--TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp C--S--SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred C--C--CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 1 1 2244899999667777777 678999999998 7765543
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.71 E-value=3.1e-15 Score=143.18 Aligned_cols=253 Identities=9% Similarity=-0.001 Sum_probs=190.7
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCC-CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCc-cccEEE
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITC 409 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~ 409 (608)
+++|++++ ++.|.+||.++|+.+..+..+. ..+.++.++|+| .++ +.++.|..||. +|+.+..+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 56788888 9999999999999999998766 478899999999 666 45788999999 89999888865 357889
Q ss_pred EEEeCCCCEEEEEcC-CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCc
Q 007306 410 LAYSLSLNVLVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLN 487 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~ 487 (608)
+.+.|+|+.+++.+. ++.|..+|. +++......+..-..++. .....+++.++|.++++. .++.|..||.. |+
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 999999999999887 778888876 333322222211001111 234466789999999985 78999999997 99
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 567 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 567 (608)
.+.++... ..+.++.+.++|+.+++++.++.|..+|..+|+.+..+..... .+ ..-.++..++..+ ++++++
T Consensus 157 ~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~--~~--~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 157 LLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI--EG--VQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp EEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS--BS--CCCSEEEEEEECT-TSCEEE
T ss_pred EEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC--CC--ccccccccceEcC-CCCEEE
Confidence 99888652 4456778889999999998889999999999999988863210 01 1123355788888 788888
Q ss_pred EEeCC--------CcEEEEeC-CCCccccccCCCCCCccccccc
Q 007306 568 LGLTN--------GRVHVIEP-LESEVEWGKLPFTDSREFSTTF 602 (608)
Q Consensus 568 s~s~D--------g~v~iW~~-~~~~~~~~~~~~~~~~~~s~~~ 602 (608)
+.... +..+++++ .+++-.|......+-+..|.++
T Consensus 229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred EeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 87421 23456666 4788899998888888888764
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=8.4e-15 Score=144.98 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=181.4
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSH 336 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~ 336 (608)
...|.+++|+|++..++..+.++.++.|.- . .|. .+ . .+...+.+++|+ +++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------~~~-----~~----~-~~~~~~~~~~~~~~g~l 58 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITA---E-------------PWL-----EI----S-KKGLQLEGLNFDRQGQL 58 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---E-------------EEE-----EE----E-SSCCCEEEEEECTTSCE
T ss_pred ccccceeeecCCccceeEEeecccCccccc---c-------------eeE-----EE----e-ccCccccCcEECCCCCE
Confidence 446778889999887777777888887721 1 111 00 0 355667899998 666
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEEee--CccccEE
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAKLK--GHQNRIT 408 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d----~~i~vwd~~~~~~~~~~~--~~~~~v~ 408 (608)
++++. ++.|.+||..+++.......+...+.+++++|+| ++++...+ +.|.+||..++.....+. .+...+.
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 66777 8999999999887766554566789999999999 76766655 689999998876553333 2446789
Q ss_pred EEEEeCCCCEEEEEcC------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEE
Q 007306 409 CLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDV 480 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~i 480 (608)
+++++|+|+++++... .+.|..+|..+++. ..+.... ..+..++|+|+|+.++++ .++.|++
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV------TPIIQNI----SVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE------EEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE------EEeecCC----CcccceEECCCCCEEEEEeCCCCeEEE
Confidence 9999999998877654 35566666554321 1111111 357889999999877663 5689999
Q ss_pred EECCC-Cceeeee------cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccccc
Q 007306 481 YEAPT-LNHTSQL------VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 481 wd~~~-~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 553 (608)
||..+ +..+..+ .... ...+..++++++|+++++...++.|.+||. +++.+..+..... ..|+ ...+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~---~~~~ 282 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGH---MLRS 282 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTC---SCBC
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-cccc---ccCc
Confidence 99964 3332211 1111 246788999999998888878899999998 4665555532100 0011 0124
Q ss_pred EEEEEecCCCCEEEEEeCC
Q 007306 554 LVIAAHPLEPNRIALGLTN 572 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s~D 572 (608)
.+++|+| |+..|..++.+
T Consensus 283 ~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 283 THPQFIP-GTNQLIICSND 300 (333)
T ss_dssp CEEEECT-TSCEEEEEEEC
T ss_pred ceEEECC-CCCEEEEEeCc
Confidence 4899999 67666655554
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=3.1e-14 Score=141.69 Aligned_cols=248 Identities=12% Similarity=0.094 Sum_probs=162.8
Q ss_pred CCCeEEEee---------cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCC---CcEEEEec
Q 007306 221 DADSAVCAK---------SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQT---ATHKLWKW 288 (608)
Q Consensus 221 dg~~l~~~~---------~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~d---g~i~iw~~ 288 (608)
||++++... .++.|.+||+.+ +.... + ..+..++|||||++|+.++.+ +...||
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~~~~--l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~-- 88 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKN----NARRF--I------ENATMPRISPDGKKIAFMRANEEKKVSEIW-- 88 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CCEEE--E------ESCEEEEECTTSSEEEEEEEETTTTEEEEE--
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCC----CceEE--c------ccCCCeEECCCCCEEEEEEeccCCCcceEE--
Confidence 899887753 356789999874 33333 2 367889999999999988764 444444
Q ss_pred CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C-----------------------
Q 007306 289 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----------------------- 342 (608)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d----------------------- 342 (608)
+|+..++....... +.. +..++|+ |+.|+.++ +
T Consensus 89 -----------------~~~~~~g~~~~l~~---~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (347)
T 2gop_A 89 -----------------VADLETLSSKKILE---AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFF 147 (347)
T ss_dssp -----------------EEETTTTEEEEEEE---ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC-------
T ss_pred -----------------EEECCCCceEEEEc---CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccc
Confidence 34444444333221 223 8899999 77787776 4
Q ss_pred ----CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCC---------CcEEEEeCCCCceEEEeeCccccEEE
Q 007306 343 ----GKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDD---------SSILVHCPCTKKTKAKLKGHQNRITC 409 (608)
Q Consensus 343 ----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d---------~~i~vwd~~~~~~~~~~~~~~~~v~~ 409 (608)
..|.+||+.+++.+..+.. . .+..++|+|+|.++++..+ ..|.++| +++.. .+..+ ..+..
T Consensus 148 ~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~ 221 (347)
T 2gop_A 148 DGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYA 221 (347)
T ss_dssp --CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEE
T ss_pred cCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceE-EeccC-cceee
Confidence 4689999998887455544 3 7889999999933334332 2455555 55543 33334 55555
Q ss_pred EEEeCCCCEEEEEcCC--------CcEEEEECCCCceecccceeeeeccCCCCccceEE-EEEcCCCCEEEE-EeCCcEE
Q 007306 410 LAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNH-IQFHPDQIHLLS-IHEGQID 479 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~sp~~~~l~~-~~d~~i~ 479 (608)
+ +|+|+.|+.++.+ ..|.+|| +++ ... +..++. ..+.. +.|+ ++ ++++ +.++.++
T Consensus 222 ~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~-l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 222 V--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-----VMG-ILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp E--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----EEE-SSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred E--CCCCCEEEEEEccccCCccccceEEEEC--CCc-----eEe-ccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 4 9999988877654 3688888 322 112 333444 46776 8999 88 6666 5788999
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE-EEEeCCCCc
Q 007306 480 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV-KVFDTSTLE 531 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i-~iwd~~~~~ 531 (608)
+| +.+++... +.. +...|.+++|+| .++++++.++.. .||.+. ++
T Consensus 287 l~-~~~g~~~~-~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 287 LY-IWDGEIKP-IAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EE-EESSSEEE-EEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EE-EcCCceEE-Eec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 99 87665533 332 267799999999 677777777654 677666 54
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=1.5e-12 Score=126.30 Aligned_cols=276 Identities=9% Similarity=0.037 Sum_probs=187.7
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
+...+.+++++++|+.+++...++.|.+|+.. +.. ..+. .. .+...+.++++. +.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-----------~~~~----------~~-~~~~~~~~i~~~~~g~ 69 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-----------TEYP----------LP-TPDAKVMCLTISSDGE 69 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-----------EEEE----------CS-STTCCEEEEEECTTSC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-----------EEec----------CC-cccCceeeEEECCCCC
Confidence 56789999999999977766667889888765 322 0111 10 134678889998 66
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEec--CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-eeCccccEEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCL 410 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~ 410 (608)
++++.. ++.|..||.. ++. ..+. .....+.++++.+++ .+++...++.|..||. +++.... .......+.++
T Consensus 70 l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp EEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 666666 7889999986 433 2232 345578899999999 6666667889999998 5554432 22345678999
Q ss_pred EEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCcee
Q 007306 411 AYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHT 489 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~ 489 (608)
+++++|+.+++...++.|..||. +++... +. ..... ..+..++++++|+..++. .++.|.+||. +++..
T Consensus 147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~--~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 147 TLGSDNALWFTENQNNAIGRITE-SGDITE---FK--IPTPA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TCCEEE---EE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---ee--CCCCC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 99999998888777889999998 533211 11 11122 457899999999876665 5788999999 66643
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
.+....+...+.+++++++|++.++...++.|..||. +++. ..+... ++ ... +.++++ + ++.+.++.
T Consensus 217 -~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~-----~~-~~~--~~~i~~-~-~g~l~v~~ 283 (299)
T 2z2n_A 217 -EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQ-----IK-SAE--PHGICF-D-GETIWFAM 283 (299)
T ss_dssp -EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECS-----SS-SCC--EEEEEE-C-SSCEEEEE
T ss_pred -EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCC-----CC-CCc--cceEEe-c-CCCEEEEe
Confidence 3333234577999999999997666667899999998 4542 233211 11 222 448888 7 67777766
Q ss_pred eCCCcEEEEeCCCC
Q 007306 570 LTNGRVHVIEPLES 583 (608)
Q Consensus 570 s~Dg~v~iW~~~~~ 583 (608)
+ .+.|..+++.++
T Consensus 284 ~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 284 E-CDKIGKLTLIKD 296 (299)
T ss_dssp T-TTEEEEEEEC--
T ss_pred c-CCcEEEEEcCcc
Confidence 5 567777777654
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=4.3e-14 Score=154.91 Aligned_cols=242 Identities=9% Similarity=-0.028 Sum_probs=166.1
Q ss_pred CCCCCeEEEEEe--CCEEEEEe-C-C----cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCc-------
Q 007306 322 DPKDSISCFALR--GSHLFSAS-G-G----KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSS------- 385 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~-d-~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~------- 385 (608)
+|...+..++|| |++|+.+. + | +|++||+.+++.......+ ..+..++|+||| .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 355568899999 88888776 3 3 8999999999877643222 225678999999 8888877765
Q ss_pred ---------EEEEeCCCCce--EEEeeC--ccccEEEEEEeCCCCEEEEEcC-----CCcEEEEECCC------Cceecc
Q 007306 386 ---------ILVHCPCTKKT--KAKLKG--HQNRITCLAYSLSLNVLVSSGA-----DAQLCVWDAVG------WKKLCS 441 (608)
Q Consensus 386 ---------i~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~s~~~-----d~~i~vwd~~~------~~~~~~ 441 (608)
|++|++.++.. ...+.. |...+..+.|+|||++|+.++. +..|++||+.+ +..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--- 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--- 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC---
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc---
Confidence 99999988762 222332 4556889999999999887764 56899999875 321
Q ss_pred cceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC----CcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCCEEE
Q 007306 442 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE----GQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIY 514 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d----~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~ 514 (608)
.+..+. .+. ..+.. .|+|+|+.|+. +.. ..|.+||+.++. ....+..+.....+..++|++++.+++
T Consensus 278 -~~~~l~-~~~---~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 278 -KWVKLI-DNF---EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp -CCEEEE-CSS---SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred -ceEEee-CCC---CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 122122 222 23433 58899998887 432 369999998764 234444322123688899998888888
Q ss_pred EEEcCCe--EEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE-EEe---CCCcEEEEeCCCCc
Q 007306 515 VSCKSGH--VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESE 584 (608)
Q Consensus 515 sg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~v~iW~~~~~~ 584 (608)
+...|+. |++|++.+|+....+.. + .. .+..++++| ++..++ +.+ ..++|+.||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~-------~-~~--~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPL-------E-VG--SVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECC-------C-SS--EEEEEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCC-------C-Cc--eEEEEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8888884 66778777876666542 1 22 244788999 666554 333 34799999998877
No 183
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=7.9e-14 Score=138.77 Aligned_cols=254 Identities=9% Similarity=0.025 Sum_probs=167.4
Q ss_pred CCcEEEEEEeeCCCEEEEEeC---------CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQ---------TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISC 329 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 329 (608)
...+...++ ||++++.... ++.|.+|+ ..++..... ..+..
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d---------------------~~~~~~~~l-------~~~~~ 63 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIEN---------------------LKNNARRFI-------ENATM 63 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEE---------------------TTTCCEEEE-------ESCEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEe---------------------CCCCceEEc-------ccCCC
Confidence 456777788 8988876532 33454444 444433221 34778
Q ss_pred EEEe--CCEEEEEe-C---C--cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC-----------------
Q 007306 330 FALR--GSHLFSAS-G---G--KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD----------------- 383 (608)
Q Consensus 330 v~~s--~~~l~s~~-d---~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d----------------- 383 (608)
++|+ |+.|+.++ + + .|.+|++.+++.......+. +..++|+||| .|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence 8999 78888777 3 3 37888888887665554433 8999999999 77776632
Q ss_pred ----------CcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC-------cEEEEECCCCceecccceee
Q 007306 384 ----------SSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------QLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 384 ----------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-------~i~vwd~~~~~~~~~~~~~~ 446 (608)
..|++||+.+++.+..+.. . .+..+.|+|+| +++++..++ ...+|.+.+++. ..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~---~~--- 212 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE---EK--- 212 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE---EE---
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce---EE---
Confidence 5799999998887455554 3 78899999999 777775542 344444434221 11
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEE-EeC--------CcEEEEECCCCceeeeecCCCCCCCeEE-EEEecCCCEEEEE
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLS-IHE--------GQIDVYEAPTLNHTSQLVPDKMDLPITY-ATYSCDGKCIYVS 516 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~sg 516 (608)
+..+ . .+..+ +|+|++|+. +.+ ..|++|| +++.. .+.. .+...+.. +.|+ |+ +++++
T Consensus 213 l~~~-~----~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~-~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 213 MFEK-V----SFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILD-EVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp EEEE-E----SEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESST-TCCSEEEEEEEET-TE-EEEEE
T ss_pred eccC-c----ceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccc-cCCcccCCccEEc-Cc-EEEEE
Confidence 2221 1 34444 999998887 432 3688888 55543 3322 34667876 8999 88 88999
Q ss_pred EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcE-EEEeCC
Q 007306 517 CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRV-HVIEPL 581 (608)
Q Consensus 517 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v-~iW~~~ 581 (608)
+.++.++|| +.+++...... + ... +.+++|+| .++++++.++.. .||.+.
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~~-------~--~~~--v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIAK-------G--RHW--IMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EETTEEEEE-EESSSEEEEEC-------S--SSE--EEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ecCCcEEEE-EcCCceEEEec-------C--CCe--EEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999999999 88665433321 1 223 44889988 577777777665 777775
No 184
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=5e-14 Score=140.74 Aligned_cols=228 Identities=9% Similarity=-0.040 Sum_probs=146.1
Q ss_pred CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCceEEEeeCc------c
Q 007306 342 GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH------Q 404 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~------~ 404 (608)
|+.|.+||..+++.+..+..+..+ .++|+||+ +++++. .++.|.+||+.+++.+..+... .
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred cCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 568999999999998888765544 89999999 777775 3678999999999888777532 2
Q ss_pred ccEEEEEEeCCCCEEEEEcC--CCcEEEEECCCCceecc-cceeeeecc-CCCCccceEEEEEcCCCCEEEE--------
Q 007306 405 NRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCS-KFLHSFQTG-LVPETTIVNHIQFHPDQIHLLS-------- 472 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~-~~~~~~~~~-~~~~~~~v~~v~~sp~~~~l~~-------- 472 (608)
.....++++|||++|+++.. +++|.+||+.+++.... ..+...... ..+. +.-.-++++++|+.++.
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~-~~~~~~~~~~dg~~~~v~~~~~g~~ 186 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPN-RPRSFMTICGDGGLLTINLGEDGKV 186 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTT-SSSEEEEEETTSSEEEEEECTTSSE
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCC-CCeeEEEECCCCcEEEEEECCCCcE
Confidence 34667899999999988864 68999999998654322 111000000 0000 00011222222222221
Q ss_pred -------------------------------EeCCcEEEEECCCCce--eeeecCCC----C----CCCeEEEEEecCCC
Q 007306 473 -------------------------------IHEGQIDVYEAPTLNH--TSQLVPDK----M----DLPITYATYSCDGK 511 (608)
Q Consensus 473 -------------------------------~~d~~i~iwd~~~~~~--~~~~~~~~----~----~~~v~~~~~s~~~~ 511 (608)
+.++.+.++|+..... +..+.... + ......++|+|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 187 ASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp EEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 2233455555433221 11110000 0 00111268999998
Q ss_pred EEEEEEc-----------CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 512 CIYVSCK-----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 512 ~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
.++++.. .+.|.+||+.+++.+..+... . .+ +++|+| |+++|++++. +.|.+||.
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~--------~--p~--~ia~sp-dg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR--------D--AL--SMTIDQ-QRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--------T--CC--EEEEET-TTTEEEEECS-SCEEEEEC
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--------C--ee--EEEECC-CCCEEEEeCC-CeEEEEEC
Confidence 8887654 358999999999998888632 2 44 899999 7899998887 99999999
Q ss_pred CCC--ccc
Q 007306 581 LES--EVE 586 (608)
Q Consensus 581 ~~~--~~~ 586 (608)
.++ +..
T Consensus 333 ~t~~l~~~ 340 (361)
T 2oiz_A 333 SQPEPKLL 340 (361)
T ss_dssp SSSSCEEE
T ss_pred CCCcceee
Confidence 998 543
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=3.2e-13 Score=133.13 Aligned_cols=268 Identities=12% Similarity=0.044 Sum_probs=179.3
Q ss_pred cCCeEEEeeccCCCCCCceeeEee---cCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEE
Q 007306 230 SLEKSVNLKLQLINEPSECRTLLL---PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQL 306 (608)
Q Consensus 230 ~d~~i~iWd~~~~~~~~~~~~~~l---~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 306 (608)
.+++|.+||.++ ++...... ...........+++. +++..++...++.|.+||..+++.
T Consensus 15 ~~~~l~~~d~~t----~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~------------- 76 (328)
T 3dsm_A 15 SNATLSYYDPAT----CEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE------------- 76 (328)
T ss_dssp CCBEEEEEETTT----TEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-------------
T ss_pred CCceEEEEECCC----CEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-------------
Confidence 478999999974 33332110 011123456778874 444555555678998887766654
Q ss_pred eeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe--CCcEEEEEcCCCceeeEecCCC-----CCeEEEEEcCCCe-E
Q 007306 307 YQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--GGKISIFSLETFQTLATFANPP-----PIATYFILLPQDL-F 377 (608)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~-l 377 (608)
+... ........++++ +..++.+. ++.|.+||..+++....+.... .....+++ .++. +
T Consensus 77 --------~~~i---~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly 144 (328)
T 3dsm_A 77 --------VGRI---TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY 144 (328)
T ss_dssp --------EEEE---ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE
T ss_pred --------EEEc---CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE
Confidence 2111 123567889996 44555554 8999999999998887776332 13456677 4444 4
Q ss_pred EEEe-CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCC----------CcEEEEECCCCceecccceee
Q 007306 378 AFGF-DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD----------AQLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 378 ~~~~-~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~~~~~~~~~~~~ 446 (608)
++.. .++.|.++|+.+++.+..+... .....+.++|+|++++++..+ +.|.++|..+++.... +.
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~--~~- 220 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ--FK- 220 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE--EE-
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE--Ee-
Confidence 4443 4889999999999888777643 345788999999877766554 7899999988543211 11
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec-CCCEEEEE----EcCCe
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC-DGKCIYVS----CKSGH 521 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg----~~dg~ 521 (608)
+..+ .....++++|+++.++++.. .|.+||..+++................++++| ++...++. ..++.
T Consensus 221 ~~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 221 FKLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp CCTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred cCCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCE
Confidence 1112 25789999999999988644 99999998887643211111146788999999 45555555 56799
Q ss_pred EEEEeCCCCceeEEEec
Q 007306 522 VKVFDTSTLELRCQINL 538 (608)
Q Consensus 522 i~iwd~~~~~~~~~~~~ 538 (608)
|.+||.. ++.+..+..
T Consensus 295 V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 295 VYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EEEECTT-CCEEEEEEE
T ss_pred EEEECCC-CCEEEEEEe
Confidence 9999998 888887753
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=1.6e-14 Score=157.94 Aligned_cols=240 Identities=9% Similarity=-0.006 Sum_probs=158.5
Q ss_pred CCCCCeEEEEEe--CCEEEEEe------CCcEEEEEcCCCcee-eEecCCCCCeEEEEEcCCC-eEEEEeCCCc------
Q 007306 322 DPKDSISCFALR--GSHLFSAS------GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD-LFAFGFDDSS------ 385 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~------d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~------ 385 (608)
+|...+..++|| |++|+.+. +.+|++||+.+++.+ .... .......++|+||| .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 466678899999 78877443 257999999998865 2111 11112578999999 8888887765
Q ss_pred -------EEEEeCCCCc----eEEEeeCccccEEEEEEeCCCCEEEEEcCCC----cEEEEECCCCceecccceeeeecc
Q 007306 386 -------ILVHCPCTKK----TKAKLKGHQNRITCLAYSLSLNVLVSSGADA----QLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 386 -------i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
|++|++.++. .+.....+...+.++.|+|||++|+.++.++ .|++||..+++ ...+...
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~------~~~l~~~ 270 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD------FRLLVKG 270 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS------CEEEEEC
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc------eEEeecC
Confidence 9999999876 2333334556789999999999988877666 67777654422 2212222
Q ss_pred CCCCccceEEEEEcCCCCEEEE-Ee----CCcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
. ..+....+ ++|. ++. +. ++.|.+||+.++.. ...+..+.....+..++|+ ++.++++...|+..+
T Consensus 271 ~----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 343 (695)
T 2bkl_A 271 V----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE 343 (695)
T ss_dssp S----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred C----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 2 24455556 6666 555 43 46899999987653 2344332224567888888 778888999999888
Q ss_pred EEeCC-CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE-EEe---CCCcEEEEeCCCCcc
Q 007306 524 VFDTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 585 (608)
Q Consensus 524 iwd~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~v~iW~~~~~~~ 585 (608)
||.+. +++....+.. +.... +..++++| ++..++ +.+ .+++|++||+.+++.
T Consensus 344 l~~~~~~g~~~~~l~~-------~~~~~--v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 344 VRVATLKGKPVRTVQL-------PGVGA--ASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEETTCCEEEECCC-------SSSSE--ECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEeCCCCeeEEecC-------CCCeE--EEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88665 3544444331 11222 33678889 676665 332 357899999988765
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=1.9e-13 Score=135.16 Aligned_cols=265 Identities=10% Similarity=0.032 Sum_probs=178.0
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceee
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLE 296 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~ 296 (608)
.|+|++..++..+.++.++.|.- ..... +.. +...+.+++|+|+|++++++..++.|.+||..+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~--- 78 (333)
T 2dg1_A 12 FYSGKSNSAVPIISESELQTITA------EPWLE--ISK--KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI--- 78 (333)
T ss_dssp CSCGGGGCSSCCCCGGGSCEEEC------EEEEE--EES--SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---
T ss_pred eecCCccceeEEeecccCccccc------ceeEE--Eec--cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE---
Confidence 47777777777778888888832 22222 322 566789999999999777888889998887665543
Q ss_pred ecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C----CcEEEEEcCCCceeeEec--CCCCCeE
Q 007306 297 EENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G----GKISIFSLETFQTLATFA--NPPPIAT 367 (608)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d----~~i~vwd~~~~~~~~~~~--~~~~~v~ 367 (608)
..... .+...+.+++++ ++++++.. + +.|.+||..++.....+. .+...+.
T Consensus 79 ------------------~~~~~--~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 138 (333)
T 2dg1_A 79 ------------------KRPFV--SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID 138 (333)
T ss_dssp ------------------EEEEE--CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred ------------------EEEee--CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc
Confidence 11110 245679999998 66666665 5 589999998876653433 2445788
Q ss_pred EEEEcCCC-eEEEEeC------CCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE-EEEcCCCcEEEEECCC-Cce
Q 007306 368 YFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVG-WKK 438 (608)
Q Consensus 368 ~~~~~~~~-~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~-~~~ 438 (608)
+++++|+| .+++... .+.|..+|..+++.... ......+..++|+|+|+.+ ++.+.++.|.+||+.+ +..
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~ 217 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT 217 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEe-ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcC
Confidence 99999999 6555543 35677777766554432 2234457899999999865 4556688999999964 221
Q ss_pred eccc--ceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCC----CCCCeEEEEEecCCC
Q 007306 439 LCSK--FLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDK----MDLPITYATYSCDGK 511 (608)
Q Consensus 439 ~~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~ 511 (608)
.... .......++ ..+..++++++|++.++. .++.|.+||. +++.+..+..+. +...+.+++|+||++
T Consensus 218 ~~~~~~~~~~~~~~~----~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 218 IQPFGATIPYYFTGH----EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp EEEEEEEEEEECCSS----SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred cccccceEEEecCCC----CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCC
Confidence 1100 000011121 257789999999877775 5688999998 577666665421 112688999999988
Q ss_pred EEEEEEcCC
Q 007306 512 CIYVSCKSG 520 (608)
Q Consensus 512 ~l~sg~~dg 520 (608)
.|+.++.++
T Consensus 293 ~L~v~~~~g 301 (333)
T 2dg1_A 293 QLIICSNDI 301 (333)
T ss_dssp EEEEEEECG
T ss_pred EEEEEeCcc
Confidence 887666653
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=7.9e-13 Score=138.92 Aligned_cols=299 Identities=14% Similarity=0.099 Sum_probs=192.5
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEe----eCCCEEEEEeC-CCcEEEEecC
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYS----HSGDFLVALTQ-TATHKLWKWQ 289 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fs----p~g~~l~s~s~-dg~i~iw~~~ 289 (608)
.+.+||||+++++++.|+.|.+||+...+ ...... ++. ......++|| |||++++++.. ++++.++|..
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t-~~~v~~--i~~---G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~ 274 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMKE-PTTVAE--IKI---GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 274 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSS-CCEEEE--EEC---CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCCC-CcEeEE--Eec---CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence 45799999999999999999999995110 122222 322 3456899999 69999998877 5899999877
Q ss_pred CCcceeeecccceeeEEeeCCCCeeeeccccCCC-CCCeEEEEEe--CCEEE-EEe-CCcEEEEEcCCCceeeEec-CCC
Q 007306 290 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADP-KDSISCFALR--GSHLF-SAS-GGKISIFSLETFQTLATFA-NPP 363 (608)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~s--~~~l~-s~~-d~~i~vwd~~~~~~~~~~~-~~~ 363 (608)
+.+.... .. .+..-. .-.+.| ...+..+..+ +..++ ... +|.|.++|..+.+...... ...
T Consensus 275 t~~~~~~----------i~--~~~~~~-~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~ 341 (567)
T 1qks_A 275 TLEPKKI----------QS--TRGMTY-DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 341 (567)
T ss_dssp TCCEEEE----------EE--CCEECT-TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC
T ss_pred CCcEEEE----------Ee--cccccc-ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc
Confidence 7665221 11 000000 000002 2257777777 44444 444 6999999987654322211 233
Q ss_pred CCeEEEEEcCCC-eEEE-EeCCCcEEEEeCCCCceEEEeeC-----ccccEEEEEEeCCCCEE-EEEc-CCCcEEEEECC
Q 007306 364 PIATYFILLPQD-LFAF-GFDDSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSLSLNVL-VSSG-ADAQLCVWDAV 434 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~-~~~d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l-~s~~-~d~~i~vwd~~ 434 (608)
.....+.|+|++ ++++ ...++.|.++|..+++.+..+.. |.+.-..+ ++|++..+ +++. .+++|.++|..
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCC
Confidence 456788999999 5554 45678999999999987766543 33222222 68875544 4443 46899999998
Q ss_pred CCce--ecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe--------CCcEEEEECCCC-----c-eeeeecC----
Q 007306 435 GWKK--LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------EGQIDVYEAPTL-----N-HTSQLVP---- 494 (608)
Q Consensus 435 ~~~~--~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--------d~~i~iwd~~~~-----~-~~~~~~~---- 494 (608)
+... ...+.++++... . ..-..+..+|+++++.+.. .++|.++|+.+. . .+..+..
T Consensus 421 ~~~~~~~~~kvv~~i~~~-g---~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPAL-G---GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp TTTCTTTBTSEEEEEECS-C---SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred CCCCccccCEEEEEEecC-C---CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 7321 112333433221 1 1223477899999999853 359999999876 2 1122211
Q ss_pred --CCCCCCeEEEEEecCCCEEEEEEc-----CCeEEEEeCCCCceeEEEe
Q 007306 495 --DKMDLPITYATYSCDGKCIYVSCK-----SGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 495 --~~~~~~v~~~~~s~~~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~ 537 (608)
......+..+.|+|+|+++..+.. ++.|.|+|..++++...+.
T Consensus 497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 112457899999999998887643 6999999999999888875
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=1.5e-13 Score=150.60 Aligned_cols=278 Identities=12% Similarity=0.049 Sum_probs=181.1
Q ss_pred cCCCCeEEEeecCC-e--EEEeeccCCCCCCceeeEeec----CCCCCCcEEEEEEeeCCCEEEEEeCCC-----cEEEE
Q 007306 219 LPDADSAVCAKSLE-K--SVNLKLQLINEPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALTQTA-----THKLW 286 (608)
Q Consensus 219 s~dg~~l~~~~~d~-~--i~iWd~~~~~~~~~~~~~~l~----~~~h~~~V~~~~fsp~g~~l~s~s~dg-----~i~iw 286 (608)
+|||++++....++ . -.+|-.... .+....+ +. ..+|...+..++|||||++||.++.++ .|++|
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l-ld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~ 156 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSL--EGEARVF-LDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM 156 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESST--TSCCEEE-ECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCC--CCCcEEE-ECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48898887765432 1 144544321 1222211 11 123555789999999999999876643 67777
Q ss_pred ecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCc----------------EEE
Q 007306 287 KWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGK----------------ISI 347 (608)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~----------------i~v 347 (608)
|+.+++. ..... ....+..++|+ |+.|+.++ ++. |++
T Consensus 157 d~~tg~~---------------------~~~~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 212 (710)
T 2xdw_A 157 KVDGAKE---------------------LPDVL---ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYY 212 (710)
T ss_dssp ETTTTEE---------------------EEEEE---EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEE
T ss_pred ECCCCCC---------------------Ccccc---cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEE
Confidence 7665543 22111 11225678999 78888887 655 999
Q ss_pred EEcCCCce--eeEec--CCCCCeEEEEEcCCC-eEEEEeC-----CCcEEEEeCCC------Cc-eEEEeeCccccEEEE
Q 007306 348 FSLETFQT--LATFA--NPPPIATYFILLPQD-LFAFGFD-----DSSILVHCPCT------KK-TKAKLKGHQNRITCL 410 (608)
Q Consensus 348 wd~~~~~~--~~~~~--~~~~~v~~~~~~~~~-~l~~~~~-----d~~i~vwd~~~------~~-~~~~~~~~~~~v~~~ 410 (608)
|++.+++. ...+. .+...+..+.|+||| .|+.++. +..|++||+.+ +. ....+..+...+..
T Consensus 213 ~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~- 291 (710)
T 2xdw_A 213 HVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD- 291 (710)
T ss_dssp EETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-
T ss_pred EECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-
Confidence 99988763 22333 345567899999999 7776654 56899999986 43 35556666665555
Q ss_pred EEeCCCCEEEEEcCC----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCC--cEEEEEC
Q 007306 411 AYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEG--QIDVYEA 483 (608)
Q Consensus 411 ~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~--~i~iwd~ 483 (608)
.|+|+|+.|+..+.+ +.|.+||+.++... ....+...+.. ..+..++|++++.++++. .++ .|++||+
T Consensus 292 ~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~--~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES---KWKVLVPEHEK--DVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEECCCSS--CEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---cceeccCCCCC--CeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 488899887766543 36999999875311 12212222210 257789999777777764 666 4777888
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc----CCeEEEEeCCCCc
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK----SGHVKVFDTSTLE 531 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~----dg~i~iwd~~~~~ 531 (608)
.+++.+..+..+ ...+..++++|+++.++.... .+.|+.||+.+++
T Consensus 367 ~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 367 ATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 778877777543 677888999999987664432 4799999999887
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=3e-14 Score=155.76 Aligned_cols=279 Identities=9% Similarity=-0.063 Sum_probs=177.1
Q ss_pred ecCCCCeEEEeecCC---eEEEeeccCCCCCCceeeEeec----CCCCCCcEEEEEEeeCCCEEEEE-----eCCCcEEE
Q 007306 218 SLPDADSAVCAKSLE---KSVNLKLQLINEPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVAL-----TQTATHKL 285 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~---~i~iWd~~~~~~~~~~~~~~l~----~~~h~~~V~~~~fsp~g~~l~s~-----s~dg~i~i 285 (608)
.+|||++++....++ .-.+|..... .+....+ +. ..+|...+..++|||||++||.+ +.+..|++
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~l-~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v 151 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGE--SGQEKVL-LDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHV 151 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEEST--TSCCEEE-ECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCC--CCCcEEE-EchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEE
Confidence 558999988877654 3555654321 1222222 21 12466689999999999999844 33467888
Q ss_pred EecCCCcceeeecccceeeEEeeCCCCeee-eccccCCCCCCeEEEEEe--CCEEEEEe-CCc-------------EEEE
Q 007306 286 WKWQSNKQSLEEENVNMESQLYQPSSKLVM-TNDIAADPKDSISCFALR--GSHLFSAS-GGK-------------ISIF 348 (608)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~-------------i~vw 348 (608)
||+.+++. + ...+ .......++|+ |+.|+.++ |.. |++|
T Consensus 152 ~dl~tg~~---------------------~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 152 IDVDSGEW---------------------SKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp EETTTCCB---------------------CSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred EECCCCCC---------------------cCCccc---CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 88776653 1 0000 11112578999 78888888 765 9999
Q ss_pred EcCCCc----eeeEecCCCCCeEEEEEcCCC-eEEEEeCCC----cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEE
Q 007306 349 SLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDS----SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVL 419 (608)
Q Consensus 349 d~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 419 (608)
++.++. .+.....+...+..+.|+||| .|+.++.++ .|++|+..+++.. .+..+...+....+ ++|.++
T Consensus 208 ~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~ 285 (695)
T 2bkl_A 208 TLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFY 285 (695)
T ss_dssp ETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEE
T ss_pred ECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEE
Confidence 998876 222333455678899999999 777766555 7888877666543 44445555666666 555554
Q ss_pred EEEc---CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECC-CCceeeeecC
Q 007306 420 VSSG---ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTSQLVP 494 (608)
Q Consensus 420 ~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~~~~~ 494 (608)
+... .++.|.+||+.+++.. ....+...+.. ..+..++++ ++.++++ ..|+..++|.+. +++....+..
T Consensus 286 ~~s~~~~~~~~l~~~d~~~~~~~---~~~~l~~~~~~--~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~ 359 (695)
T 2bkl_A 286 VLTDEGAPRQRVFEVDPAKPARA---SWKEIVPEDSS--ASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL 359 (695)
T ss_dssp EEECTTCTTCEEEEEBTTBCSGG---GCEEEECCCSS--CEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC
T ss_pred EEECCCCCCCEEEEEeCCCCCcc---CCeEEecCCCC--CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC
Confidence 4444 2578999999774321 11223323211 457888888 5566666 478877776543 4555555543
Q ss_pred CCCCCCeEEEEEecCCCEEEEEE----cCCeEEEEeCCCCce
Q 007306 495 DKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 532 (608)
Q Consensus 495 ~~~~~~v~~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~~ 532 (608)
+ ....+..++++|+++.++... ..+.|++||+.+++.
T Consensus 360 ~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 360 P-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp S-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred C-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2 256677888999998777433 347899999998874
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.61 E-value=3.7e-13 Score=132.53 Aligned_cols=288 Identities=12% Similarity=0.075 Sum_probs=187.8
Q ss_pred eecCCCCeEEEeec-----CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe----------CCC
Q 007306 217 TSLPDADSAVCAKS-----LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTA 281 (608)
Q Consensus 217 ~~s~dg~~l~~~~~-----d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s----------~dg 281 (608)
...||++.++.+.. ++.|.+.|..+ .+.... ++. -..+ . +++||||++++.+. .++
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t----~~v~~~-I~v--G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGM-IDG--GFLP-N-PVVADDGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTT----TEEEEE-EEE--CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCC----CeEEEE-EEC--CCCC-c-EEECCCCCEEEEEcccccccccCCCCC
Confidence 47799998888865 68999999874 333321 221 1233 3 99999999888775 256
Q ss_pred cEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCcee
Q 007306 282 THKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS---GGKISIFSLETFQTL 356 (608)
Q Consensus 282 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~---d~~i~vwd~~~~~~~ 356 (608)
.|.+||..+.+.... +....|... .....-..++|+ |++++.+. ++.|.++|+.+++.+
T Consensus 110 ~VsviD~~t~~v~~~----------I~v~~g~r~------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv 173 (386)
T 3sjl_D 110 YVEVFDPVTLLPTAD----------IELPDAPRF------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK 173 (386)
T ss_dssp EEEEECTTTCCEEEE----------EEETTCCCC------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred EEEEEECCCCeEEEE----------EECCCcccc------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEE
Confidence 788777766654111 000000000 011234568888 88877775 478999999999999
Q ss_pred eEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEEeeCc----cccEE-EEEEe-CCCCEEEEEcCCCc
Q 007306 357 ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNRIT-CLAYS-LSLNVLVSSGADAQ 427 (608)
Q Consensus 357 ~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~-~~~~~~~~~~----~~~v~-~~~~~-~~~~~l~s~~~d~~ 427 (608)
.++.... |..+.|.+ .+++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|+
T Consensus 174 ~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~ 248 (386)
T 3sjl_D 174 RMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK 248 (386)
T ss_dssp EEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE
T ss_pred EEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE
Confidence 9886432 22233544 677888899999999876 5543221111 12221 24565 5775544 566899
Q ss_pred EEEEECCCCceeccccee--e---eeccCCCCccceEEEEEcCCCCEEEEE-e----------CCcEEEEECCCCceeee
Q 007306 428 LCVWDAVGWKKLCSKFLH--S---FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~--~---~~~~~~~~~~~v~~v~~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~ 491 (608)
|.+.|+.+........+. . ...+..+ +....++++|+++.+++. . .+.|.++|+.+++.+.+
T Consensus 249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~ 326 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK 326 (386)
T ss_dssp EEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE
Confidence 999999775321111111 0 0011111 234457889999988884 2 24699999999999999
Q ss_pred ecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEeCCCCceeEEEece
Q 007306 492 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQINLT 539 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~-~l~sg~-~dg~i~iwd~~~~~~~~~~~~~ 539 (608)
+.. ...+.++++++|++ .|++.. .++.|.++|..+++.+.++...
T Consensus 327 i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 327 FEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred EEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 876 35788999999997 666654 4899999999999999988653
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=2.9e-13 Score=131.47 Aligned_cols=230 Identities=11% Similarity=-0.042 Sum_probs=161.3
Q ss_pred CCCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 323 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 323 ~~~~v~~v~~s--~~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
+.....+++|+ ++ +++++. ++.|..||..++ ...+..+...+.+++++|+| ++++...++.|.+||..+++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 45667899999 66 666776 899999999877 66677777889999999999 7776666789999999888755
Q ss_pred EEeeCc----cccEEEEEEeCCCCEEEEE----cC-------------CCcEEEEECCCCceecccceeeeeccCCCCcc
Q 007306 398 AKLKGH----QNRITCLAYSLSLNVLVSS----GA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 456 (608)
Q Consensus 398 ~~~~~~----~~~v~~~~~~~~~~~l~s~----~~-------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 456 (608)
...... ...+..++++|+|+++++. +. .+.|..++.. ++ +.... .+. .
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~------~~~~~-~~~---~ 172 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT------LSAPI-RDR---V 172 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC------EEEEE-CCC---S
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC------EEEee-cCC---C
Confidence 433221 2346789999999988873 31 2455555544 22 11111 222 4
Q ss_pred ceEEEEEcCCCCEEEEE-eCCcEEEEECC-CCce---eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCc
Q 007306 457 IVNHIQFHPDQIHLLSI-HEGQIDVYEAP-TLNH---TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLE 531 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~-~d~~i~iwd~~-~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~ 531 (608)
....++|+|+|+.+++. .++.|++||+. ++.. ...+ . .+...+..++++++|+++++. ++.|.+|+.. ++
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~ 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence 57899999999998554 57899999986 5554 3334 2 235667789999999866666 8899999987 66
Q ss_pred eeEEEeceeeccCCCcccccccEEEEE-ecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 532 LRCQINLTAYAQPGTISLELYPLVIAA-HPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 532 ~~~~~~~~~~~~~g~~~~~v~~~~v~~-sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
.+..+..+ .. +.+++| +| ++..|.+++.++ +.-+++.+.
T Consensus 248 ~~~~~~~~--------~~---~~~~~f~~~-d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 248 ELGRVLTP--------QT---TSNLCFGGP-EGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEEECS--------SC---CCEEEEEST-TSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEEECC--------CC---ceeEEEECC-CCCEEEEEcCCe-EEEEEcccc
Confidence 66666532 22 448899 47 788888888763 444455444
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=1.5e-11 Score=119.06 Aligned_cols=273 Identities=7% Similarity=-0.019 Sum_probs=187.1
Q ss_pred eeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 214 RESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
..+.+.++|+..++...++.|..||.. +....+.++. +...+.+++++++|..+++...++.|..|+.. +..
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLD-----GKITEYPLPT--PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTT-----CCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCC-----CCeEEecCCc--ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 344688999977777778999999975 3344433332 45789999999999987777668888888754 211
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeE-ecCCCCCeEEE
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYF 369 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~-~~~~~~~v~~~ 369 (608)
..+. .. .....+.++++. +.++++.. ++.|.+||. +++.... .......+..+
T Consensus 90 -----------~~~~----------~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i 146 (299)
T 2z2n_A 90 -----------KEYT----------LP-NPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI 146 (299)
T ss_dssp -----------EEEE----------CS-STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred -----------EEEe----------CC-CcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence 1111 10 134567888888 55666555 789999998 5554432 22345678899
Q ss_pred EEcCCC-eEEEEeCCCcEEEEeCCCCceEEE-eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 370 ILLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 370 ~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
++.++| .+++...++.|..||. +++.... .......+.+++++++|+++++...++.|.+||. +++.. .+.
T Consensus 147 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~-- 219 (299)
T 2z2n_A 147 TLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT---EFK-- 219 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEE--
T ss_pred EEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE---EEE--
Confidence 999999 6666666789999999 6665432 3334556889999999998887777889999998 54321 111
Q ss_pred eccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
..... ..+.+++++++|+..++. .++.|..||. ++. +..+....+...+.++++ ++|.+.++.+ .+.|..++
T Consensus 220 ~~~~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 220 IPTPN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLT 292 (299)
T ss_dssp CSSTT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEE
T ss_pred CCCCC---CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEE
Confidence 11222 468899999999866665 6789999998 454 334433233567899999 8888766654 67787888
Q ss_pred CCCCc
Q 007306 527 TSTLE 531 (608)
Q Consensus 527 ~~~~~ 531 (608)
..+++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 77654
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=6.6e-13 Score=128.88 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=166.5
Q ss_pred CCCcEEEEEEeeCCC-EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 258 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 258 h~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
+.....+++|+|+|+ .++++..++.|..|+..++ . ..+. .+...+.+++++ |
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-----------~~~~-------------~~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-----------SPEM-------------HPSHHQNGHCLNKQG 80 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-----------EEEE-------------SSCSSEEEEEECTTC
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-----------EEEE-------------CCCCCcceeeECCCC
Confidence 456788999999998 6777778899988876554 2 1111 255678899998 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecCC----CCCeEEEEEcCCC-eEEE----Ee-------------CCCcEEEEeC
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAF----GF-------------DDSSILVHCP 391 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~l~~----~~-------------~d~~i~vwd~ 391 (608)
+++++.. ++.|.+||..+++........ ...+..++++|+| ++++ |+ ..+.|..++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 6666655 689999999888765443221 2345679999999 6666 33 1346777776
Q ss_pred CCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECC-CCce-ecccceeeeeccCCCCccceEEEEEcCCCCE
Q 007306 392 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV-GWKK-LCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
. ++. ..+..+......++|+|+++.+++.+.++.|.+||+. ++.. .. .. ....+. ..+..++++++|++
T Consensus 161 ~-g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~---~~-~~~~~~---~~p~~i~~d~~G~l 231 (296)
T 3e5z_A 161 D-GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ---GV-HFTVEP---GKTDGLRVDAGGLI 231 (296)
T ss_dssp T-SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE---EE-EECCSS---SCCCSEEEBTTSCE
T ss_pred C-CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC---Ce-EeeCCC---CCCCeEEECCCCCE
Confidence 5 443 3444566678999999999999878888999999987 3321 11 11 112222 45678999999987
Q ss_pred EEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEE-ecCCCEEEEEEcCCeEEEEeCCCCcee
Q 007306 470 LLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATY-SCDGKCIYVSCKSGHVKVFDTSTLELR 533 (608)
Q Consensus 470 l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~sg~~dg~i~iwd~~~~~~~ 533 (608)
.++. ++.|.+||.. ++.+..+..+ .. +.+++| +|+++.|++++.+ .+.-++..+.++.
T Consensus 232 ~v~~-~~~v~~~~~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 232 WASA-GDGVHVLTPD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEE-TTEEEEECTT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEEc-CCeEEEECCC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6667 8899999985 7777777653 44 889999 5899999998875 4656677666543
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=5.2e-13 Score=127.64 Aligned_cols=237 Identities=11% Similarity=0.020 Sum_probs=162.0
Q ss_pred CeEEEEEe--CCEEEEE-e-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 326 SISCFALR--GSHLFSA-S-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 326 ~v~~v~~s--~~~l~s~-~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
...+++++ +++++++ . ++.|.+||..++........+...+.+++++++| .+++.. ++.|.+||..++......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 67788998 6655524 4 7899999986654332222333567789999999 555555 889999998765443222
Q ss_pred eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEE
Q 007306 401 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 479 (608)
Q Consensus 401 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~ 479 (608)
......+.+++++|+|+.+++...++.|.+|+..+... .. ...... ..+..++++|+|+.+++. .++.|.
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~-----~~-~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-----TV-LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC-----EE-CCCCSC---CSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee-----Ee-eccccC---CCceeEEEeCCCCEEEEECCCCEEE
Confidence 12335789999999999888878889999997655221 11 111111 356789999999866664 578999
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEe
Q 007306 480 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 559 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 559 (608)
+||........... .+...+..++++++|.++++...++.|.+|+..+..... ... ++ . ..+.+++++
T Consensus 175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~------~~-~--~~p~~i~~~ 242 (270)
T 1rwi_B 175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF------TG-L--NTPLAVAVD 242 (270)
T ss_dssp EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC------CS-C--SCEEEEEEC
T ss_pred EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc------CC-C--CCceeEEEC
Confidence 99987665433222 123678999999999877777778899999987654332 111 11 1 224589999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 560 PLEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
| +++++++...++.|+++++...+.
T Consensus 243 ~-~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 243 S-DRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp T-TCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C-CCCEEEEECCCCEEEEEcCCCccc
Confidence 9 788999999999999999976553
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=1.1e-11 Score=123.71 Aligned_cols=282 Identities=8% Similarity=-0.014 Sum_probs=184.4
Q ss_pred ecCCCCeEEEeec--CC---eEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe----------CCCc
Q 007306 218 SLPDADSAVCAKS--LE---KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTAT 282 (608)
Q Consensus 218 ~s~dg~~l~~~~~--d~---~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s----------~dg~ 282 (608)
..|++++++.... .. +|.++|..+ .+... +++. -..+ .++|||||++++.+. .++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t----~~~~~-~i~~--g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGS----GSILG-HVNG--GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCC----CeEEE-EecC--CCCC--CeEECCCCCEEEEEeccccccccCCCCCe
Confidence 4578887777653 22 889999874 33332 2332 1233 999999999999886 3577
Q ss_pred EEEEecCCCcceeeecccceeeEEeeCC-CCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C--CcEEEEEcCCCcee
Q 007306 283 HKLWKWQSNKQSLEEENVNMESQLYQPS-SKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--GKISIFSLETFQTL 356 (608)
Q Consensus 283 i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d--~~i~vwd~~~~~~~ 356 (608)
|.+||..+.+.... +... .+.. .+...-..++|+ |++|++++ . +.|.++| .+++.+
T Consensus 99 v~viD~~t~~~~~~----------i~~~~~~~~-------~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 99 VEVFDPVTFLPIAD----------IELPDAPRF-------DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSD 160 (373)
T ss_pred EEEEECCCCcEEEE----------EECCCcccc-------ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEE
Confidence 88888766543111 0100 0000 011233478888 88888776 3 6899999 999988
Q ss_pred eE-ecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEee-----Ccccc-EEEEEEeCCCCEEEEEcCCCc
Q 007306 357 AT-FANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNR-ITCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 357 ~~-~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~s~~~d~~ 427 (608)
.. +.... |+.+.|++ .+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+..+.
T Consensus 161 ~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 161 DQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred eEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce
Confidence 77 65322 34566766 6677778999999999 887663322 11112 123456776666555557889
Q ss_pred EEEEECCCCceecccceee-----eeccCCCCccceEEEEEcCCCCEEEEE-e----------CCcEEEEECCCCceeee
Q 007306 428 LCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~v~~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~ 491 (608)
+.+.|+.+........+.. ...+..+ .....+.++|+++.+++. . ++.|.++|..+++.+.+
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~ 313 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRP--GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceec--CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE
Confidence 9999997642111111110 0011111 234458899999988874 2 25799999999999999
Q ss_pred ecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEeCCCCceeEEE
Q 007306 492 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~-~l~sg~-~dg~i~iwd~~~~~~~~~~ 536 (608)
+.. ......++|+|||+ .++++. .++.|.+||..+++.+..+
T Consensus 314 i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 314 ISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 865 34688999999999 777776 4899999999999988774
No 197
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.57 E-value=1.4e-12 Score=124.67 Aligned_cols=236 Identities=9% Similarity=0.002 Sum_probs=163.2
Q ss_pred cEEEEEEeeCCCEEE-EEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 261 RVVRLIYSHSGDFLV-ALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~-s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
...+++++|+|+.++ +.+.++.|.+|+..+... ..+. . .+...+.+++++ ++ +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-----------~~~~----------~--~~~~~p~~i~~~~~g~-l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-----------TVLP----------F--NGLYQPQGLAVDGAGT-V 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------EECC----------C--CSCCSCCCEEECTTCC-E
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-----------ceEe----------e--CCcCCcceeEECCCCC-E
Confidence 788999999999666 446788898887544322 0000 0 233456788898 55 5
Q ss_pred EEEe-CCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 338 FSAS-GGKISIFSLETFQTLATFA-NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 338 ~s~~-d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
+.+. ++.|.+||...... ..+. .....+..++++++| .+++...++.|.+|+..+.............+.+++++|
T Consensus 81 ~v~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 159 (270)
T 1rwi_B 81 YVTDFNNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN 159 (270)
T ss_dssp EEEETTTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT
T ss_pred EEEcCCCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC
Confidence 5555 88999999876543 3333 233568899999999 777777788999998765544332222334678899999
Q ss_pred CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeec
Q 007306 415 SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLV 493 (608)
Q Consensus 415 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 493 (608)
+|+++++...++.|.+||..+.... . ...... ..+..++++++|...++. .++.|.+||....... ...
T Consensus 160 ~g~l~v~~~~~~~i~~~~~~~~~~~-----~-~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~ 229 (270)
T 1rwi_B 160 SGNVYVTDTDNNRVVKLEAESNNQV-----V-LPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP 229 (270)
T ss_dssp TCCEEEEEGGGTEEEEECTTTCCEE-----E-CCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECC
T ss_pred CCCEEEEECCCCEEEEEecCCCceE-----e-ecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eec
Confidence 9998888777899999998773321 1 111221 357899999999666665 5789999998654432 222
Q ss_pred CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCce
Q 007306 494 PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 532 (608)
Q Consensus 494 ~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~ 532 (608)
. .+...+.+++++++|+++++...++.|++++....+.
T Consensus 230 ~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 230 F-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp C-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred c-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 2246789999999999888888899999999887653
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1e-12 Score=125.59 Aligned_cols=233 Identities=12% Similarity=0.024 Sum_probs=171.4
Q ss_pred eCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCC-CCeEEEEEe--CCEEEEEeCCcE
Q 007306 269 HSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSISCFALR--GSHLFSASGGKI 345 (608)
Q Consensus 269 p~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~s--~~~l~s~~d~~i 345 (608)
..++.|++++.|+.|.+||.++++. +|.... +. ..+.++.++ |++++ +.++.|
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~------------~w~~~~-----------~~~~~~~~~~~~pdG~ilv-s~~~~V 58 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEI------------VWEYPL-----------EKGWECNSVAATKAGEILF-SYSKGA 58 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEE------------EEEEEC-----------CTTCCCCEEEECTTSCEEE-ECBSEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeE------------EEEeCC-----------CccCCCcCeEECCCCCEEE-eCCCCE
Confidence 3467899999999999999877776 565321 22 356778888 77777 448889
Q ss_pred EEEEcCCCceeeEecCCC-CCeEEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEEee------CccccEEEEEEeCCC
Q 007306 346 SIFSLETFQTLATFANPP-PIATYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLK------GHQNRITCLAYSLSL 416 (608)
Q Consensus 346 ~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~-d~~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~ 416 (608)
..||. +|+.+..+..+. ..+.++.+.++| .+++.+. ++.|..+|. +|+.+..+. .+......+.+.++|
T Consensus 59 ~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G 136 (276)
T 3no2_A 59 KMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG 136 (276)
T ss_dssp EEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS
T ss_pred EEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC
Confidence 99999 899999998653 578889999999 8887776 788888886 677776654 222345566789999
Q ss_pred CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCC
Q 007306 417 NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPD 495 (608)
Q Consensus 417 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 495 (608)
+++++...++.|..||.. ++.... +... ....++.+.++|..++++ .++.|..+|..+|+.+.++...
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~-----~~~~-----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNS-----VKLS-----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEE-----EECS-----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred CEEEEecCCCEEEEECCC-CCEEEE-----EECC-----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence 999999999999999988 553322 2111 235567889999999885 5568999999999998888532
Q ss_pred C----CCCCeEEEEEecCCCEEEEEEcC--------CeEEEEeC-CCCceeEEEec
Q 007306 496 K----MDLPITYATYSCDGKCIYVSCKS--------GHVKVFDT-STLELRCQINL 538 (608)
Q Consensus 496 ~----~~~~v~~~~~s~~~~~l~sg~~d--------g~i~iwd~-~~~~~~~~~~~ 538 (608)
. ....+..++..++|..+++.+.. +..+++++ .+|+.+..+..
T Consensus 206 ~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 206 DIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp GSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 1 12347888899999988887421 23456666 57777777653
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=8.5e-11 Score=113.86 Aligned_cols=275 Identities=8% Similarity=-0.006 Sum_probs=185.1
Q ss_pred CCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
....+.+++++++|+..++...++.|.+|+.. ++. ..+. .. .+...+.++++. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------~~~~----------~~-~~~~~~~~i~~~~~g~ 74 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------KEFE----------VP-TPDAKVMCLIVSSLGD 74 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------EEEE----------CS-STTCCEEEEEECTTSC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------EEEE----------CC-CCCCcceeEEECCCCC
Confidence 46688999999999977777678899888765 322 0111 11 234568888888 66
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeE-ecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEE-EeeCccccEEEEE
Q 007306 336 HLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKA-KLKGHQNRITCLA 411 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~ 411 (608)
+.++.. ++.|..||.. ++.... .......+.++++.+++ .+++...++.|..+|.. ++... .+......+.+++
T Consensus 75 l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 75 IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 555555 6889999988 655322 22234678899999999 66666668899999987 65542 2233456789999
Q ss_pred EeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceee
Q 007306 412 YSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 412 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~ 490 (608)
+.++|+..++...++.|..||. +++.. .+. ..... ..+..++++++|...++. ..+.|.+||. +++...
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~--~~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~ 222 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLE---EYP--LPTNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE 222 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEE---EEE--CSSTT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEE---Eee--CCCCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE
Confidence 9999997777777889999998 43221 111 11222 467899999999877765 4568999998 555433
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
. ....+...+.+++++++|++.++...++.|..|+. +++.. .+... .+ ... +.++++.+ ++.+.++..
T Consensus 223 ~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~----~~--~~~--~~~i~~~~-~g~l~v~~~ 290 (300)
T 2qc5_A 223 Y-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQ----TE--NAE--PHGITFGK-DGSVWFALK 290 (300)
T ss_dssp E-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECC----ST--TCC--CCCEEECT-TSCEEEECS
T ss_pred E-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECC----cc--CCc--cceeEeCC-CCCEEEEcc
Confidence 2 22223567899999999997666666799999998 45433 22211 01 222 34888999 677666654
Q ss_pred CCCcEEEEeCC
Q 007306 571 TNGRVHVIEPL 581 (608)
Q Consensus 571 ~Dg~v~iW~~~ 581 (608)
. .|..+++.
T Consensus 291 -~-~i~~~~p~ 299 (300)
T 2qc5_A 291 -C-KIGKLNLN 299 (300)
T ss_dssp -S-EEEEEEEC
T ss_pred -C-ceEEeCCC
Confidence 4 67777653
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=7.6e-13 Score=145.63 Aligned_cols=280 Identities=13% Similarity=0.027 Sum_probs=171.9
Q ss_pred ecCCCCeEEEeecCCe---EEEeeccCCC-CCCceeeEeec----CCCCCCcEEEEEEeeCCCEEEEEeCC-C----cEE
Q 007306 218 SLPDADSAVCAKSLEK---SVNLKLQLIN-EPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALTQT-A----THK 284 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~---i~iWd~~~~~-~~~~~~~~~l~----~~~h~~~V~~~~fsp~g~~l~s~s~d-g----~i~ 284 (608)
.+|||++++....++. -.+|...... ..+....+ +. ..+|...+..++|||||++||.++.+ | .|+
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-ld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~ 192 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVL-LDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVK 192 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEE-ECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEE-ECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEE
Confidence 5699999888776543 5667654210 00111211 11 12244578899999999999887664 3 477
Q ss_pred EEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCc--------------EEEE
Q 007306 285 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGK--------------ISIF 348 (608)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~--------------i~vw 348 (608)
+||+.+++. +.... +...+..++|+ ++.|+.++ ++. |.+|
T Consensus 193 v~dl~tg~~---------------------~~~~~---~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~ 248 (741)
T 1yr2_A 193 FVGVADGKP---------------------LADEL---KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLH 248 (741)
T ss_dssp EEETTTCCE---------------------EEEEE---EEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEE
T ss_pred EEECCCCCC---------------------CCccC---CCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEE
Confidence 777666553 21110 11112456777 66666666 543 8899
Q ss_pred EcCCCce--eeEecC--CCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCC--ceEEEeeCccccEEEEEEeCCC
Q 007306 349 SLETFQT--LATFAN--PPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTK--KTKAKLKGHQNRITCLAYSLSL 416 (608)
Q Consensus 349 d~~~~~~--~~~~~~--~~~~v~~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~ 416 (608)
++.++.. ...+.. +...+..+.|+||| .|+..+.++ .|++||+.++ +....+..+...+... ++|+|
T Consensus 249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg 327 (741)
T 1yr2_A 249 RLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVG 327 (741)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEET
T ss_pred ECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccC
Confidence 9987652 233332 33357899999999 777666443 8999999877 4144555555555554 35888
Q ss_pred CEEEEEcCC----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECC-CCceee
Q 007306 417 NVLVSSGAD----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAP-TLNHTS 490 (608)
Q Consensus 417 ~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~-~~~~~~ 490 (608)
+.|+..+.+ +.|.+||+.++. .....+...+. ..+.++.++ ++.++++ ..++..+||.+. ++....
T Consensus 328 ~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 328 DQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 888877653 459999987742 11222333333 456677887 4455555 477766665443 456556
Q ss_pred eecCCCCCCCeEEEEEecCCCEEEEEE----cCCeEEEEeCCCCce
Q 007306 491 QLVPDKMDLPITYATYSCDGKCIYVSC----KSGHVKVFDTSTLEL 532 (608)
Q Consensus 491 ~~~~~~~~~~v~~~~~s~~~~~l~sg~----~dg~i~iwd~~~~~~ 532 (608)
.+..+ +...+..+.++|+++.|+... ..+.|++||+.+++.
T Consensus 400 ~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 400 AVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred eccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 66432 256788899999998666332 347899999998873
No 201
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=1.3e-11 Score=120.70 Aligned_cols=234 Identities=12% Similarity=0.060 Sum_probs=160.4
Q ss_pred CCCeEEEEEe--CCEEEE-------Ee-CCcEEEEEcCCCceeeEec----CCCCCeEEEEEcCC-CeEEEEeCCCcEEE
Q 007306 324 KDSISCFALR--GSHLFS-------AS-GGKISIFSLETFQTLATFA----NPPPIATYFILLPQ-DLFAFGFDDSSILV 388 (608)
Q Consensus 324 ~~~v~~v~~s--~~~l~s-------~~-d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~l~~~~~d~~i~v 388 (608)
-....+++|+ +.++++ .. ++.|.+||..+++...... ++...+.+++++++ +.+.+++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 3456789998 666666 35 8999999988877643322 24467889999999 74444444558999
Q ss_pred EeCCCCceEEE-eeC----ccccEEEEEEeCCCCEEEEEcCC---------------CcEEEEECCCCceecccceeeee
Q 007306 389 HCPCTKKTKAK-LKG----HQNRITCLAYSLSLNVLVSSGAD---------------AQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 389 wd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~s~~~d---------------~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
||.. ++.... ... ....+.+++++|+|+++++...+ +.|..||.. ++. .. ..
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~-~~ 168 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-----IQ-VD 168 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-----EE-EE
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE-----EE-ec
Confidence 9988 765433 221 12458899999999988877655 567777654 221 11 11
Q ss_pred ccCCCCccceEEEEEc----CCCCEEEEE--eCCcEEEEECC-CCce-----eeeecCCCCC-CCeEEEEEecCCCEEEE
Q 007306 449 TGLVPETTIVNHIQFH----PDQIHLLSI--HEGQIDVYEAP-TLNH-----TSQLVPDKMD-LPITYATYSCDGKCIYV 515 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~s----p~~~~l~~~--~d~~i~iwd~~-~~~~-----~~~~~~~~~~-~~v~~~~~s~~~~~l~s 515 (608)
.. . .....++++ |+++.++++ .++.|.+||.. +++. ...+. .+. ..+..++++++|+++++
T Consensus 169 ~~-~---~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 169 TA-F---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP--GTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp EE-E---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC--CCSSCEEEEEEEBTTCCEEEE
T ss_pred cC-C---CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC--CCCCCCCCceEECCCCCEEEE
Confidence 11 1 246789999 999776664 56889999986 4432 22221 122 56788999999998888
Q ss_pred EEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEEEEeCCCcEEEEeCCC
Q 007306 516 SCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 516 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s~Dg~v~iW~~~~ 582 (608)
...++.|.+||..+++....+... .. .+.+++|+| +++ ++++...++.|..|++..
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~~~~~--------~~--~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMRIRCP--------FE--KPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEECS--------SS--CEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred EcCCCEEEEEcCCCCcEeEEEeCC--------CC--CceeEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence 888899999999888766655421 22 245899999 788 555556678999999875
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=6.7e-12 Score=123.58 Aligned_cols=281 Identities=11% Similarity=-0.008 Sum_probs=183.9
Q ss_pred EEEeeCCCEEEEEeC-----CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 265 LIYSHSGDFLVALTQ-----TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 265 ~~fsp~g~~l~s~s~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
....|+++.++.... ++.|.+.|..+.+. +..... +. .+ . ++++ |+++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------~~~I~v-G~-~P-~-va~spDG~~l 92 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------IGMIDG-GF-LP-N-PVVADDGSFI 92 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------EEEEEE-CS-SC-E-EEECTTSSCE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------EEEEEC-CC-CC-c-EEECCCCCEE
Confidence 345689998888765 56777666555543 322211 22 22 3 8888 7766
Q ss_pred EEEe-----------CCcEEEEEcCCCceeeEecCCC-------CCeEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCce
Q 007306 338 FSAS-----------GGKISIFSLETFQTLATFANPP-------PIATYFILLPQD-LFAFGFD--DSSILVHCPCTKKT 396 (608)
Q Consensus 338 ~s~~-----------d~~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~~~~~-~l~~~~~--d~~i~vwd~~~~~~ 396 (608)
++++ ++.|.+||..+++.+..+.-.. .....++++||| +++++.. ++.|.++|+.+++.
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 5553 5789999999999988875321 245578999999 7777653 68999999999999
Q ss_pred EEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCC-CceecccceeeeeccCCCCccceE-EEEE-cCCCCEEEEE
Q 007306 397 KAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVN-HIQF-HPDQIHLLSI 473 (608)
Q Consensus 397 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~-~v~~-sp~~~~l~~~ 473 (608)
+.++.... . ...+....+.+++.+.||++.+.++.+ ++...... . .+.... .++. ...| .++|++++++
T Consensus 173 v~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~-~~~~~~---~~~~~~~~~~~~dG~~~~vs 244 (386)
T 3sjl_D 173 KRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-E-VFHPED---EFLINHPAYSQKAGRLVWPT 244 (386)
T ss_dssp EEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-C-CCSCTT---SCBCSCCEEETTTTEEEEEB
T ss_pred EEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec-c-eecccc---ccccccceeEcCCCcEEEEe
Confidence 98885422 1 122333446677888889988888875 33211000 1 111100 1221 2455 4788887787
Q ss_pred eCCcEEEEECCCCc--eeeeec--------CCCCCCCeEEEEEecCCCEEEEEEc----------CCeEEEEeCCCCcee
Q 007306 474 HEGQIDVYEAPTLN--HTSQLV--------PDKMDLPITYATYSCDGKCIYVSCK----------SGHVKVFDTSTLELR 533 (608)
Q Consensus 474 ~d~~i~iwd~~~~~--~~~~~~--------~~~~~~~v~~~~~s~~~~~l~sg~~----------dg~i~iwd~~~~~~~ 533 (608)
.++.+++.|+.+.. .+..+. ..-.......++++++++.++.... .+.|.+.|+.+++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 78999999997654 333332 0001223335777999998888653 257999999999999
Q ss_pred EEEeceeeccCCCcccccccEEEEEecCCCC-EEEEE-eCCCcEEEEeCCCCccccccC
Q 007306 534 CQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALG-LTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 534 ~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~-s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
..+.. ....+ .++++| |++ +|.++ ..++.|.++|..+++..-...
T Consensus 325 ~~i~v---------g~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 325 AKFEM---------GHEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EEEEE---------EEEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEEEC---------CCCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 98875 22345 899999 665 66554 558999999999988644333
No 203
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=7.6e-11 Score=117.71 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=158.7
Q ss_pred EEEEe--CCEEEEEe-----------CCcEEEEEcCCCceeeEecCC-------CCCeEEEEEcCCC-eEEEEeC--CCc
Q 007306 329 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS 385 (608)
Q Consensus 329 ~v~~s--~~~l~s~~-----------d~~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~l~~~~~--d~~ 385 (608)
.++++ +++++.+. ++.|.+||..+++.+..+... ......+.|+||| +|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 78898 77777764 467999999998888776532 1234578999999 8777764 578
Q ss_pred EEEEeCCCCceEEE-eeCccccEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE
Q 007306 386 ILVHCPCTKKTKAK-LKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 463 (608)
Q Consensus 386 i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 463 (608)
|.++| .+++.+.. +... . ++.+.|++ +.+++.+.||.+.++|. +++............+.. .......+
T Consensus 150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~~ 220 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPAQ 220 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeeccee
Confidence 99999 99988877 5432 1 24555655 45667788999999999 754331111000111111 11223456
Q ss_pred cCCCCEEE-EEeCCcEEEEECCCCc--eeeeecCCC--------CCCCeEEEEEecCCCEEEEEEc----------CCeE
Q 007306 464 HPDQIHLL-SIHEGQIDVYEAPTLN--HTSQLVPDK--------MDLPITYATYSCDGKCIYVSCK----------SGHV 522 (608)
Q Consensus 464 sp~~~~l~-~~~d~~i~iwd~~~~~--~~~~~~~~~--------~~~~v~~~~~s~~~~~l~sg~~----------dg~i 522 (608)
.+++..++ ++.++.+.+.|+.++. .+..+.... .......++++||++.++++.. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V 300 (373)
T 2mad_H 221 ANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV 300 (373)
T ss_pred EecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence 66655444 4677899999986543 222221100 0223445789999998887653 3589
Q ss_pred EEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEEEEe-CCCcEEEEeCCCCccc
Q 007306 523 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 586 (608)
Q Consensus 523 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~v~iW~~~~~~~~ 586 (608)
.++|..+++.+..+.. | ...+ .++|+| |++ .++++. .++.|.+||+.+++..
T Consensus 301 ~VID~~t~~vv~~i~~------g---~~p~--~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 301 TSVTGLVGQTSSQISL------G---HDVD--AISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEECCCCEEEEEEEC------C---CCcC--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 9999999999888853 2 2233 899999 787 777776 5899999999998764
No 204
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=1.9e-10 Score=111.38 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=182.9
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.+.++|+..++...++.|..||.. +....+.++. +...+.+++++++|...++...++.|..||.. +..
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-----~~~~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~- 94 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-----GRIKEFEVPT--PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF- 94 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-----SCEEEEECSS--TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-----CceEEEECCC--CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence 34688999988877788999999975 3344443433 45789999999999977776667888877765 322
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeE-ecCCCCCeEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-GGKISIFSLETFQTLAT-FANPPPIATYFI 370 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~ 370 (608)
...... .....+.++++. ++++++.. ++.|..+|.. ++.... +......+.+++
T Consensus 95 --------------------~~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 95 --------------------TEYPLP-QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp --------------------EEEECS-STTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred --------------------EEecCC-CCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 111111 133567888888 66666665 7899999987 655432 233456788999
Q ss_pred EcCCC-eEEEEeCCCcEEEEeCCCCceEEE-eeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 371 LLPQD-LFAFGFDDSSILVHCPCTKKTKAK-LKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 371 ~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
+.+++ .+++...++.|..+|. +++.... ...+...+.+++++++|+..++....+.|.+||. +++.. ... .
T Consensus 153 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~---~~~--~ 225 (300)
T 2qc5_A 153 LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS---EYD--I 225 (300)
T ss_dssp ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE---EEE--C
T ss_pred ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE---EEE--C
Confidence 99999 6666666789999998 5554432 2234457889999999988887777788999998 32211 111 1
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
.... ..+.+++++++|+..++. .++.|..||. +++.. .+........+.+++++++|++.++.. . .|..+|.
T Consensus 226 ~~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 226 PTPN---ARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp SSTT---CCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCC---CCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 1222 467899999999866665 4689999998 45433 333222356688899999998666554 4 6777765
Q ss_pred C
Q 007306 528 S 528 (608)
Q Consensus 528 ~ 528 (608)
.
T Consensus 299 ~ 299 (300)
T 2qc5_A 299 N 299 (300)
T ss_dssp C
T ss_pred C
Confidence 3
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=4.6e-12 Score=139.39 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=153.4
Q ss_pred CCCCeEEEEEe--CCEEEEEe-C-C----cEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCC----------
Q 007306 323 PKDSISCFALR--GSHLFSAS-G-G----KISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDS---------- 384 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~-d-~----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~---------- 384 (608)
|...+..++|| |++|+.+. + | +|++||+.+|+.+.... +...+..++|+||..|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGNDALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTTSEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECCCEEEEEEecCcccccccccC
Confidence 44467889999 88888776 3 3 59999999998765321 11123478899987344444433
Q ss_pred ----cEEEEeCCCCce--EEEeeC--ccccEEEEEEeCCCCEEEEEcCCC-----cEEEEECCCCceecccceeeeeccC
Q 007306 385 ----SILVHCPCTKKT--KAKLKG--HQNRITCLAYSLSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 385 ----~i~vwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
.|++|++.++.. ...+.. +...+..+.|+|||++|+..+.++ .|++||+.++.. .....+....
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~---~~~~~l~~~~ 316 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI---GPVTALIPDL 316 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE---CCCEEEECSS
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC---cccEEecCCC
Confidence 399999987752 223332 334588999999999988777544 899999987421 1022122222
Q ss_pred CCCccceEEEEEcCCCCEEEE-Ee----CCcEEEEECCCC-ceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 452 VPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTL-NHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 452 ~~~~~~v~~v~~sp~~~~l~~-~~----d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
..+... ++|+|+.|+. +. ++.|.+||+.++ .....+.. .+...+..++|+ ++.++++...|+..+||
T Consensus 317 ----~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 317 ----KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 233344 3488988887 43 345999999875 23344433 234556678887 66778888889987777
Q ss_pred eCC-CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE-EEe---CCCcEEEEeCCCCcc
Q 007306 526 DTS-TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA-LGL---TNGRVHVIEPLESEV 585 (608)
Q Consensus 526 d~~-~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la-s~s---~Dg~v~iW~~~~~~~ 585 (608)
.+. +++....+... + . ..+..++++| ++..++ +.+ ..++|++||+.+++.
T Consensus 390 ~~~~~g~~~~~l~~~-----~--~--~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLP-----G--I--GSASGLSGRP-GDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp EEETTSCEEEECBCS-----S--S--CEEEEEECCB-TCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred EEeCCCCceeeccCC-----C--C--eEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 654 35544444311 1 2 2244889999 566444 333 347999999988775
No 206
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.47 E-value=4.2e-11 Score=117.03 Aligned_cols=244 Identities=11% Similarity=0.005 Sum_probs=163.3
Q ss_pred CCcEEEEEEeeCCCEEEE-------EeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE
Q 007306 259 GGRVVRLIYSHSGDFLVA-------LTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA 331 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s-------~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (608)
-....+++|+++|..+++ +..++.|.+|+..+++.. .+.. .. ..++...+.+++
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-----------~~~~--~~------~~~~~~~~~~i~ 77 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VICK--PE------VNGYGGIPAGCQ 77 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEEC--CE------ETTEECCEEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-----------EEEe--cc------cCCCCCCCceEE
Confidence 446688999999987777 567888998886655431 1110 00 002445688899
Q ss_pred Ee-C-CEEEEEe-CCcEEEEEcCCCceeeE-ecC----CCCCeEEEEEcCCC-eEEEEeCC---------------CcEE
Q 007306 332 LR-G-SHLFSAS-GGKISIFSLETFQTLAT-FAN----PPPIATYFILLPQD-LFAFGFDD---------------SSIL 387 (608)
Q Consensus 332 ~s-~-~~l~s~~-d~~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~-~l~~~~~d---------------~~i~ 387 (608)
++ + ..+..++ .+.|.+||.. ++.... ... ....+.+++++++| .+++...+ +.|.
T Consensus 78 ~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 78 CDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp ECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred EecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 98 5 6766666 6689999998 765433 221 12347899999999 66655544 5788
Q ss_pred EEeCCCCceEEEeeCccccEEEEEEe----CCCCEEE-EEcCCCcEEEEECC-CCceecccceeeeeccCCCCccceEEE
Q 007306 388 VHCPCTKKTKAKLKGHQNRITCLAYS----LSLNVLV-SSGADAQLCVWDAV-GWKKLCSKFLHSFQTGLVPETTIVNHI 461 (608)
Q Consensus 388 vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v 461 (608)
.||.. ++..... .+......++++ |+++.+. +...++.|.+||.. +++......+. ...++.. ..+..+
T Consensus 157 ~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~--~~p~~i 231 (314)
T 1pjx_A 157 CFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHE--GGADGM 231 (314)
T ss_dssp EECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSS--CEEEEE
T ss_pred EECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-ECCCCCC--CCCCce
Confidence 88876 5544332 234457889999 9997554 44568999999986 33221111222 1112110 246789
Q ss_pred EEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEeCCC
Q 007306 462 QFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTST 529 (608)
Q Consensus 462 ~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg-~~dg~i~iwd~~~ 529 (608)
+++++|++.++. .++.|.+||..+++.+..+.. +...+.+++|+++|+.|+.+ ..++.|..|++..
T Consensus 232 ~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999888774 678999999987877666654 25789999999999966555 4568999999875
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.44 E-value=2.7e-11 Score=121.58 Aligned_cols=278 Identities=13% Similarity=0.091 Sum_probs=182.9
Q ss_pred CCCCeEEEeecC-----CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe----------CCCcEE
Q 007306 220 PDADSAVCAKSL-----EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHK 284 (608)
Q Consensus 220 ~dg~~l~~~~~d-----~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s----------~dg~i~ 284 (608)
|+++.++.+... +.|.+.|..+ .+.... ++- -..+ .+++||||++|+.+. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t----~~vv~~-I~v--G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST----GRILGM-TDG--GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT----TEEEEE-EEE--CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC----CEEEEE-EEC--CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEE
Confidence 566666655542 6899999984 333321 221 1334 899999999888876 356788
Q ss_pred EEecCCCcceeeecccceeeEEeeCCCCeeeeccccC--C---CCCCeEEEEEe--CCEEEEEe---CCcEEEEEcCCCc
Q 007306 285 LWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--D---PKDSISCFALR--GSHLFSAS---GGKISIFSLETFQ 354 (608)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~v~~s--~~~l~s~~---d~~i~vwd~~~~~ 354 (608)
++|..+.+. ....... . .......+.|+ |++++.+. ++.|.+.|+.+++
T Consensus 153 viD~~t~~v---------------------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 153 VFDPVTFLP---------------------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp EECTTTCCE---------------------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred EEECCCCcE---------------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 777666654 2111100 0 01233467888 78888876 3689999999999
Q ss_pred eeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE----eeCccccE-EEEEEeCCCCEEEEEcCCCc
Q 007306 355 TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK----LKGHQNRI-TCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 355 ~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~s~~~d~~ 427 (608)
.+..+.... +....|++ .+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++..+..+.
T Consensus 212 vv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~ 287 (426)
T 3c75_H 212 FDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK 287 (426)
T ss_dssp EEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE
T ss_pred EEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc
Confidence 988887432 23345555 566677788888888866655422 11111111 23467899888877788899
Q ss_pred EEEEECCCCceecccceee-----eeccCCCCccceEEEEEcCCCCEEEEE-e----------CCcEEEEECCCCceeee
Q 007306 428 LCVWDAVGWKKLCSKFLHS-----FQTGLVPETTIVNHIQFHPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQ 491 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~v~~sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~ 491 (608)
+.+.|..+........+.. ...+..+ .....++++|+++.+++. . ++.|.++|..+++.+.+
T Consensus 288 V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~ 365 (426)
T 3c75_H 288 IFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK 365 (426)
T ss_dssp EEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred EEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE
Confidence 9999987543211111110 0000011 122247899999888874 2 24799999999999999
Q ss_pred ecCCCCCCCeEEEEEecCCC-EEEEEE-cCCeEEEEeCCCCceeEEE
Q 007306 492 LVPDKMDLPITYATYSCDGK-CIYVSC-KSGHVKVFDTSTLELRCQI 536 (608)
Q Consensus 492 ~~~~~~~~~v~~~~~s~~~~-~l~sg~-~dg~i~iwd~~~~~~~~~~ 536 (608)
+.. ......++|+|||+ ++++.. .++.|.++|+.+++.+.++
T Consensus 366 I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 366 IEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 875 34588999999999 888887 5899999999999999886
No 208
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.42 E-value=4.1e-10 Score=113.13 Aligned_cols=303 Identities=10% Similarity=-0.017 Sum_probs=187.6
Q ss_pred CCCeEEEeecCCeEEEeeccCCCCCCcee-eEeecCCC---C--CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 221 DADSAVCAKSLEKSVNLKLQLINEPSECR-TLLLPDNS---F--GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 221 dg~~l~~~~~d~~i~iWd~~~~~~~~~~~-~~~l~~~~---h--~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
++..++.++.++.|..+|..+ ++.. .+.+.... + ...+.+. ...++..++.++.++.+..+|..+++.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~- 125 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD----GKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTV- 125 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT----CCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCE-
T ss_pred ECCEEEEEcCCCeEEEEEccC----CceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCE-
Confidence 467788888899999999874 3333 22221100 0 2223222 223456788889999999999888876
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCe-----EE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIA-----TY 368 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v-----~~ 368 (608)
+|....+. .........+..++.++ ++.|..+|..+|+.+..+....... ..
T Consensus 126 -----------~W~~~~~~-----------~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 183 (376)
T 3q7m_A 126 -----------AWQTKVAG-----------EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESA 183 (376)
T ss_dssp -----------EEEEECSS-----------CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCC
T ss_pred -----------EEEEeCCC-----------ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCC
Confidence 56532211 11111123366777777 8999999999999988776433211 11
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCcccc-------EEEEEEeC--CCCEEEEEcCCCcEEEEECCCCcee
Q 007306 369 FILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNR-------ITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKKL 439 (608)
Q Consensus 369 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~~ 439 (608)
.... ++.++++..++.+..+|..+|+.+......... +..+...| .+..++.++.++.+..+|..+++..
T Consensus 184 ~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 184 PTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIM 262 (376)
T ss_dssp CEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEE
T ss_pred cEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEE
Confidence 2222 347778888999999999999988766532110 00011111 2456777888999999999986543
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
..... .....+... +..+++ +.++.+..+|..+++.+....... ...+..... .+..|+.++.
T Consensus 263 w~~~~-----------~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 263 WKREL-----------GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp EEECC-----------CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECT
T ss_pred eeccC-----------CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeC
Confidence 22111 123344443 445555 678899999999999876664211 222222232 2568889999
Q ss_pred CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 519 SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 519 dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
+|.|+++|..+|+.+...... ...+.. .... .+..|..++.||.|..|+.
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~--------~~~~~~-~~~~---~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVD--------SSGFQT-EPVA---ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECC--------TTCBCS-CCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEecC--------CCccee-CCEE---ECCEEEEEeCCCEEEEEeC
Confidence 999999999999988776531 111211 1112 1357888899999999873
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.41 E-value=5.5e-11 Score=117.61 Aligned_cols=172 Identities=10% Similarity=0.018 Sum_probs=129.6
Q ss_pred CCeEEEEEe--CCEEEEEeCCcEEEEEcCCCc-----------eeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe
Q 007306 325 DSISCFALR--GSHLFSASGGKISIFSLETFQ-----------TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC 390 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd 390 (608)
..++.++++ ..++++|+...+.+|++.+.+ ..... .+.. |+.++| |+ .|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 368899999 778888885577779976443 11222 3555 999999 77 88888 889999999
Q ss_pred CCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 391 PCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
+.+.........|...+.++.+.+.. +++++.||.+.+||+.++... .+. ..|++++|||+| ..
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~---~~~----------~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK---QLA----------QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE---EEE----------ESEEEEEECSSE-EE
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc---ccc----------CCceEEEEcCCc-eE
Confidence 98876666666677888888776643 888899999999999875421 111 479999999999 33
Q ss_pred EEEeCCcEEEEECCCCce--eeeecC-------CCCCCCeEEEEEecCCCEEEEEE
Q 007306 471 LSIHEGQIDVYEAPTLNH--TSQLVP-------DKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 471 ~~~~d~~i~iwd~~~~~~--~~~~~~-------~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
+...||.+++|+...+.. ..++.. .+|...|.++.|.+++.++++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 446899999999877664 455521 12578899999999999998743
No 210
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.41 E-value=7e-11 Score=127.83 Aligned_cols=293 Identities=12% Similarity=0.046 Sum_probs=186.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCC-CC-eEEEEEeCCEEEEEe-CCcEEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DS-ISCFALRGSHLFSAS-GGKISI 347 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-v~~v~~s~~~l~s~~-d~~i~v 347 (608)
+..++.++.++.+..+|..+++. +|............ ... .. -..+++.+..++.++ |+.|..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~v~v~~~dg~l~A 135 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRL------------IWKYDPQSDRHRAG--EACCDAVNRGVAVWKGKVYVGVLDGRLEA 135 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCce------------eEEEcCCCCccccc--cccccCCCCccEEECCEEEEEccCCEEEE
Confidence 55688888889999999998886 77654322110000 000 01 112334477788888 999999
Q ss_pred EEcCCCceeeEecCC--CCCeEEEEEcC---CCeEEEEe------CCCcEEEEeCCCCceEEEeeCcc------------
Q 007306 348 FSLETFQTLATFANP--PPIATYFILLP---QDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQ------------ 404 (608)
Q Consensus 348 wd~~~~~~~~~~~~~--~~~v~~~~~~~---~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~------------ 404 (608)
+|..+|+.+..+... ......+..+| ++.+++++ .++.|+.||..+|+.+..+....
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 215 (689)
T 1yiq_A 136 IDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGM 215 (689)
T ss_dssp EETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHH
T ss_pred EECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccc
Confidence 999999999887642 11111111122 55444443 36899999999999887765210
Q ss_pred -------------------ccEEEEEEeCCCCEEEEEcCCCc-------------------EEEEECCCCceecccceee
Q 007306 405 -------------------NRITCLAYSLSLNVLVSSGADAQ-------------------LCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 405 -------------------~~v~~~~~~~~~~~l~s~~~d~~-------------------i~vwd~~~~~~~~~~~~~~ 446 (608)
.....++++|++..++.++.++. |..+|.++++........
T Consensus 216 ~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~- 294 (689)
T 1yiq_A 216 EIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT- 294 (689)
T ss_dssp HHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-
T ss_pred cccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-
Confidence 01125788998889998887764 999999997754322211
Q ss_pred eeccCCC----CccceEEEEEcCCCC---EEEE-EeCCcEEEEECCCCceeeeecCCC----------------------
Q 007306 447 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------------------- 496 (608)
Q Consensus 447 ~~~~~~~----~~~~v~~v~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------------------- 496 (608)
.|.. ...+........+|+ .++. ..+|.++++|.++|+.+.......
T Consensus 295 ---~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 295 ---PGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred ---CcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 1100 001222222233564 5655 488999999999999874332210
Q ss_pred ----C-----------CCCeEEEEEecCCCEEEEEEc-------------------------------------------
Q 007306 497 ----M-----------DLPITYATYSCDGKCIYVSCK------------------------------------------- 518 (608)
Q Consensus 497 ----~-----------~~~v~~~~~s~~~~~l~sg~~------------------------------------------- 518 (608)
. ...-..++|+|+...+++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0 001123788998888887633
Q ss_pred --CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccCCCC
Q 007306 519 --SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 593 (608)
Q Consensus 519 --dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~~ 593 (608)
+|.|+.||+.+|+.+..+... . ... .-.+.. .+.++++++.||.|+.||..+|+..|....+.
T Consensus 452 ~~~g~l~A~D~~tG~~~W~~~~~--------~-~~~--~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAAWEVPYV--------T-IFN--GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp TCEEEEEEEETTTTEEEEEEEES--------S-SCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcceeEEEEECCCCCeEeEccCC--------C-Ccc--CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 378999999999988887532 1 111 223444 57799999999999999999999999886553
No 211
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=5.2e-11 Score=128.59 Aligned_cols=295 Identities=10% Similarity=0.026 Sum_probs=190.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 349 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd 349 (608)
+..++.++.++.|.-+|..+++. +|......................+++.+..++.++ |+.|..+|
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD 144 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNR------------IWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALD 144 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEE------------EEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcE------------EEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEE
Confidence 45677888889999999988886 776543321100000000001123344577778888 99999999
Q ss_pred cCCCceeeEecCC-C----CCeEEEEEcCCCeEEEEeC------CCcEEEEeCCCCceEEEeeCcccc------------
Q 007306 350 LETFQTLATFANP-P----PIATYFILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR------------ 406 (608)
Q Consensus 350 ~~~~~~~~~~~~~-~----~~v~~~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~------------ 406 (608)
..+|+.+..+... . ..+.+--.-.++.+++++. ++.|+.+|..+|+.+..+......
T Consensus 145 ~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 224 (677)
T 1kb0_A 145 AATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKR 224 (677)
T ss_dssp TTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHH
T ss_pred CCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccc
Confidence 9999999888754 2 1121111112444555443 689999999999998776542111
Q ss_pred --------------------EEEEEEeCCCCEEEEEcCCC-------------------cEEEEECCCCceecccceeee
Q 007306 407 --------------------ITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 407 --------------------v~~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~~ 447 (608)
...++++|++..++.++.++ .|..+|.++++........
T Consensus 225 g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-- 302 (677)
T 1kb0_A 225 AARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-- 302 (677)
T ss_dssp HHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS--
T ss_pred ccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC--
Confidence 12578899988988887664 4999999997654332211
Q ss_pred eccCC----CCccceEEEEEcCCC---CEEEE-EeCCcEEEEECCCCceeeeecCCCC---------CCCe---------
Q 007306 448 QTGLV----PETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM---------DLPI--------- 501 (608)
Q Consensus 448 ~~~~~----~~~~~v~~v~~sp~~---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~---------~~~v--------- 501 (608)
.|. .......-+....+| ..++. +.+|.++++|..+|+.+..+..... ..++
T Consensus 303 --~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 380 (677)
T 1kb0_A 303 --PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGS 380 (677)
T ss_dssp --TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTT
T ss_pred --CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCC
Confidence 110 000122223344477 45666 5889999999999998876643210 0011
Q ss_pred ---------------EEEEEecCCCEEEEEEcC-------------------------------------------CeEE
Q 007306 502 ---------------TYATYSCDGKCIYVSCKS-------------------------------------------GHVK 523 (608)
Q Consensus 502 ---------------~~~~~s~~~~~l~sg~~d-------------------------------------------g~i~ 523 (608)
..++|+|++..+++...+ |.|.
T Consensus 381 ~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~ 460 (677)
T 1kb0_A 381 KPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLL 460 (677)
T ss_dssp SCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEE
T ss_pred CccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEE
Confidence 157889999888876542 7899
Q ss_pred EEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccCCCC
Q 007306 524 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 593 (608)
Q Consensus 524 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~~ 593 (608)
.||+.+++.+..+... ...+ ...+.. ++.+++.++.||.+++||..+++..|....+.
T Consensus 461 A~D~~tG~~~W~~~~~---------~~~~--~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 461 AWDPVAQKAAWSVEHV---------SPWN--GGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEETTTTEEEEEEEES---------SSCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred EEeCCCCcEEeecCCC---------CCCc--CcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 9999999988877531 1122 333455 56788889999999999999999999876553
No 212
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.40 E-value=2.6e-10 Score=110.49 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=148.4
Q ss_pred CCcEEEEEEeeCCC-EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 259 GGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 259 ~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
..-.-+..|+|++. .+++...++.|..|+..++.. ..+. ....+.+++++ ++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------------~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-----------QRVT--------------MDAPVSSVALRQSGG 66 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-----------EEEE--------------CSSCEEEEEEBTTSS
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-----------EEEe--------------CCCceEEEEECCCCC
Confidence 34456788999655 455555678888887665432 1111 34678899999 66
Q ss_pred EEEEEeCCcEEEEEcCCCceeeEecC----CCCCeEEEEEcCCC-eEEEEeC-----------CCcEEEEeCCCCceEEE
Q 007306 336 HLFSASGGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAFGFD-----------DSSILVHCPCTKKTKAK 399 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~-~l~~~~~-----------d~~i~vwd~~~~~~~~~ 399 (608)
++.+.++.|.+||..+++....... ....+..++++|+| ++++... .+.|..++.. ++...
T Consensus 67 -l~v~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~- 143 (297)
T 3g4e_A 67 -YVATIGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK- 143 (297)
T ss_dssp -EEEEETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-
T ss_pred -EEEEECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-
Confidence 5555677899999988765443322 12347889999999 5444322 2345555543 33332
Q ss_pred eeCccccEEEEEEeCCCCEE-EEEcCCCcEEEEECC--CCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eC
Q 007306 400 LKGHQNRITCLAYSLSLNVL-VSSGADAQLCVWDAV--GWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE 475 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d 475 (608)
+..+....+.++|+|+++.| ++.+.++.|.+||+. ++.......+..+. .+. +....++++++|.+.++. ..
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-GGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-CCC---CCCCeeEECCCCCEEEEEcCC
Confidence 33344457899999999866 455667899999974 44322112222111 111 357789999999877775 56
Q ss_pred CcEEEEECCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEc
Q 007306 476 GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCK 518 (608)
Q Consensus 476 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~~ 518 (608)
+.|..||..+++.+..+..+ ...+++++|+ |+++.|+.++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 78999999889988888653 5679999998 89887776654
No 213
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=9.4e-11 Score=126.57 Aligned_cols=322 Identities=10% Similarity=0.024 Sum_probs=202.5
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceee-EeecCCCCC-------CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNSFG-------GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~-~~l~~~~h~-------~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
+..++.++.++.|.-+|..+ ++.+. +.+...... .....+++ ++..++.++.|+.+..+|..+++.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~ 150 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRT----GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE 150 (677)
T ss_dssp TTEEEEECGGGCEEEEETTT----TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCC----CcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 45666677778888888764 33322 211110000 00012222 466788899999999999999886
Q ss_pred eeeecccceeeEEeeCCCC-eeeeccccCCCCCCeE-EEEEeCCEEEEEe-------CCcEEEEEcCCCceeeEecCCCC
Q 007306 294 SLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPPP 364 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~-~v~~s~~~l~s~~-------d~~i~vwd~~~~~~~~~~~~~~~ 364 (608)
+|....+ ... ....+. .....+..++.++ ++.|+.+|..+|+.+..+.....
T Consensus 151 ------------~W~~~~~~~~~-------~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 211 (677)
T 1kb0_A 151 ------------VWHQNTFEGQK-------GSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG 211 (677)
T ss_dssp ------------EEEEETTTTCC-------SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred ------------EeeecCCcCcC-------cCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCC
Confidence 6765432 100 001111 1112345555544 48899999999999988764221
Q ss_pred C--------------------------------eEEEEEcCCC-eEEEEeCCC-------------------cEEEEeCC
Q 007306 365 I--------------------------------ATYFILLPQD-LFAFGFDDS-------------------SILVHCPC 392 (608)
Q Consensus 365 ~--------------------------------v~~~~~~~~~-~l~~~~~d~-------------------~i~vwd~~ 392 (608)
. ...++++|++ .++.+..++ .|..+|..
T Consensus 212 ~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~ 291 (677)
T 1kb0_A 212 DPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD 291 (677)
T ss_dssp CTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred CccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC
Confidence 1 1246788888 777776654 59999999
Q ss_pred CCceEEEeeC--cc-------ccEEEEEEeCCC---CEEEEEcCCCcEEEEECCCCceecccceeeee-------c----
Q 007306 393 TKKTKAKLKG--HQ-------NRITCLAYSLSL---NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-------T---- 449 (608)
Q Consensus 393 ~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~---- 449 (608)
+|+.+..++. |. ....-+....+| ..++.++.+|.++++|..+++......+.... .
T Consensus 292 TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~ 371 (677)
T 1kb0_A 292 TGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPI 371 (677)
T ss_dssp TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEE
T ss_pred CCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCcee
Confidence 9999887764 21 122223344477 67889999999999999998764332211000 0
Q ss_pred --------cCC----CC---ccceEEEEEcCCCCEEEEE-eC--------------------------------------
Q 007306 450 --------GLV----PE---TTIVNHIQFHPDQIHLLSI-HE-------------------------------------- 475 (608)
Q Consensus 450 --------~~~----~~---~~~v~~v~~sp~~~~l~~~-~d-------------------------------------- 475 (608)
++. |. ...-..++++|++..+++. .+
T Consensus 372 ~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 451 (677)
T 1kb0_A 372 GIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPP 451 (677)
T ss_dssp ECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCC
T ss_pred eccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccC
Confidence 000 00 0000257889998888773 31
Q ss_pred -----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccc
Q 007306 476 -----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLE 550 (608)
Q Consensus 476 -----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~ 550 (608)
+.|..||+.+++.+.++.. ..++....+..++..++.++.||.+++||..+|+.+..+... ..
T Consensus 452 ~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~---------~~ 519 (677)
T 1kb0_A 452 KSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG---------TG 519 (677)
T ss_dssp CSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS---------SC
T ss_pred CCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC---------CC
Confidence 6799999999998877753 344555667788889999999999999999999999988642 11
Q ss_pred cccEEEEEecCCCC-EEEEEeC----------------CCcEEEEeCC
Q 007306 551 LYPLVIAAHPLEPN-RIALGLT----------------NGRVHVIEPL 581 (608)
Q Consensus 551 v~~~~v~~sp~d~~-~las~s~----------------Dg~v~iW~~~ 581 (608)
+...-+.|.+ ++. ++++.+. .+.+.+|.+.
T Consensus 520 ~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 520 VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 2233566777 565 4444333 3678888876
No 214
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.38 E-value=3e-10 Score=122.92 Aligned_cols=311 Identities=11% Similarity=0.058 Sum_probs=192.5
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceee-EeecCCC-----CC-CcE-EEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~-~~l~~~~-----h~-~~V-~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
+..++.++.++.|.-+|..+ ++.+. +.+.... .. ..+ ..++ .++..++.++.|+.+..+|..+++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~v~v~~~dg~l~AlDa~TG~~ 143 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD----GRLIWKYDPQSDRHRAGEACCDAVNRGVA--VWKGKVYVGVLDGRLEAIDAKTGQR 143 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCE--EETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCC----CceeEEEcCCCCccccccccccCCCCccE--EECCEEEEEccCCEEEEEECCCCCE
Confidence 56677777788888889874 33332 2111100 00 000 1112 2456788999999999999999886
Q ss_pred eeeecccceeeEEeeCCCC-eeeeccccCCCCCCeE-EEEEeCCEEEEEe-------CCcEEEEEcCCCceeeEecCCC-
Q 007306 294 SLEEENVNMESQLYQPSSK-LVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP- 363 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~-~v~~s~~~l~s~~-------d~~i~vwd~~~~~~~~~~~~~~- 363 (608)
+|..... .. .....+. +....+..++.++ ++.|..||..+|+.+..+....
T Consensus 144 ------------~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 204 (689)
T 1yiq_A 144 ------------AWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG 204 (689)
T ss_dssp ------------EEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred ------------eeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCC
Confidence 6764332 00 0001111 1112244454443 4789999999999988775211
Q ss_pred --C----------------------------CeEEEEEcCCC-eEEEEeCCCc-------------------EEEEeCCC
Q 007306 364 --P----------------------------IATYFILLPQD-LFAFGFDDSS-------------------ILVHCPCT 393 (608)
Q Consensus 364 --~----------------------------~v~~~~~~~~~-~l~~~~~d~~-------------------i~vwd~~~ 393 (608)
. .-..++++|++ .++++..++. |..+|..+
T Consensus 205 ~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T 284 (689)
T 1yiq_A 205 DPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT 284 (689)
T ss_dssp CTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT
T ss_pred CcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC
Confidence 0 01257788888 8888877763 99999999
Q ss_pred CceEEEeeC--cc-------ccEEEEEEeCCCC---EEEEEcCCCcEEEEECCCCceecccceee--e------------
Q 007306 394 KKTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHS--F------------ 447 (608)
Q Consensus 394 ~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~s~~~d~~i~vwd~~~~~~~~~~~~~~--~------------ 447 (608)
|+.+..++. |. ..+.......+|+ .++.++.+|.++++|..+++......+.. .
T Consensus 285 G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi 364 (689)
T 1yiq_A 285 GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPI 364 (689)
T ss_dssp CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEE
T ss_pred CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcc
Confidence 999987764 21 1222222333565 78889999999999999987652211110 0
Q ss_pred --------eccCC-----CC---ccceEEEEEcCCCCEEEEE-e------------------------------------
Q 007306 448 --------QTGLV-----PE---TTIVNHIQFHPDQIHLLSI-H------------------------------------ 474 (608)
Q Consensus 448 --------~~~~~-----~~---~~~v~~v~~sp~~~~l~~~-~------------------------------------ 474 (608)
..... |. ...-..++++|+...+++. .
T Consensus 365 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~ 444 (689)
T 1yiq_A 365 LDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAE 444 (689)
T ss_dssp ECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHH
T ss_pred cchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccc
Confidence 00000 00 0001237889988877763 2
Q ss_pred ---------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCC
Q 007306 475 ---------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG 545 (608)
Q Consensus 475 ---------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g 545 (608)
+|.|+.||+.+|+.+-++..+ .+.....++..+.+++.|+.||.|+.||.++|+.+..+...
T Consensus 445 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~------ 515 (689)
T 1yiq_A 445 GLLEMAKSWSGKLIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA------ 515 (689)
T ss_dssp HHHHHHTTCEEEEEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS------
T ss_pred cCCCCCCCcceeEEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC------
Confidence 367999999999988777542 33344466778889999999999999999999999888642
Q ss_pred CcccccccEEEEEecCCCC-EEEEEe
Q 007306 546 TISLELYPLVIAAHPLEPN-RIALGL 570 (608)
Q Consensus 546 ~~~~~v~~~~v~~sp~d~~-~las~s 570 (608)
..+...-+.|.. |+. |+++.+
T Consensus 516 ---~~~~~~p~ty~~-~G~qyv~~~~ 537 (689)
T 1yiq_A 516 ---SGVMAAPVTYSV-DGEQYVTFMA 537 (689)
T ss_dssp ---SCCCSCCEEEEE-TTEEEEEEEE
T ss_pred ---CCcccCceEEEE-CCEEEEEEEe
Confidence 112223467777 554 555543
No 215
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=5.5e-10 Score=108.19 Aligned_cols=222 Identities=11% Similarity=0.008 Sum_probs=145.6
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE
Q 007306 325 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK 399 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~ 399 (608)
.-..+..|+ ++.|+... ++.|..||..+++. ..+. ....+.+++++++| ++++ . ++.|.+||..+++....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEE
Confidence 344577887 44444444 78999999988765 3332 34678999999999 5444 3 56899999988765433
Q ss_pred eeC----ccccEEEEEEeCCCCEEEEEcCC---------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC
Q 007306 400 LKG----HQNRITCLAYSLSLNVLVSSGAD---------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD 466 (608)
Q Consensus 400 ~~~----~~~~v~~~~~~~~~~~l~s~~~d---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~ 466 (608)
... ....++.++++|+|+++++...+ ..-.+|.+.... .... ..... ...+.++|+|+
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~-~~~~~----~~pngi~~spd 159 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH----HVKK-YFDQV----DISNGLDWSLD 159 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS----CEEE-EEEEE----SBEEEEEECTT
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC----CEEE-Eeecc----ccccceEEcCC
Confidence 221 23458899999999977654321 233455544311 1111 11111 24678999999
Q ss_pred CCEEEEE--eCCcEEEEEC--CCCcee--eeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEece
Q 007306 467 QIHLLSI--HEGQIDVYEA--PTLNHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 539 (608)
Q Consensus 467 ~~~l~~~--~d~~i~iwd~--~~~~~~--~~~~-~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 539 (608)
++.++++ .++.|.+||+ .++... +.+. ...+......++++++|++.++...++.|..||..+++.+..+...
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 9988764 5688999987 455432 1121 1112356788999999998888878889999999999988877532
Q ss_pred eeccCCCcccccccEEEEEe-cCCCCEEEEEe
Q 007306 540 AYAQPGTISLELYPLVIAAH-PLEPNRIALGL 570 (608)
Q Consensus 540 ~~~~~g~~~~~v~~~~v~~s-p~d~~~las~s 570 (608)
. ..+++++|. | |++.|..++
T Consensus 240 --------~--~~~t~~~f~g~-d~~~L~vt~ 260 (297)
T 3g4e_A 240 --------V--DKTTSCCFGGK-NYSEMYVTC 260 (297)
T ss_dssp --------S--SBEEEEEEESG-GGCEEEEEE
T ss_pred --------C--CCceEEEEeCC-CCCEEEEEc
Confidence 1 235699998 7 565554443
No 216
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=5e-11 Score=117.91 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=126.7
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCC-----CCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecC
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLIN-----EPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQ 289 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~-----~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~ 289 (608)
..++++....+++|+.++ +++|++++.. ....+....... +.. |+.++| |+++|+++ .++.|++||+.
T Consensus 42 lLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 42 NLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred EEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 347999999999999985 5559876422 000011100111 566 999999 99999998 88999999987
Q ss_pred CCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEE
Q 007306 290 SNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATY 368 (608)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~ 368 (608)
+... +.... .|..++.++.+....++++. ||.+.+||+.++.... +...|+|
T Consensus 115 sl~~------------------~~~~~-----~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~ 167 (388)
T 1xip_A 115 ELSE------------------FRTVT-----SFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTS 167 (388)
T ss_dssp STTC------------------EEEEE-----ECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEE
T ss_pred hhhc------------------cCccc-----eeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceE
Confidence 6543 11111 25667888877733377777 9999999999877654 3458999
Q ss_pred EEEcCCCeEEEEeCCCcEEEEeCCCCce--EEEe------e---CccccEEEEEEeCCCCEEEEE
Q 007306 369 FILLPQDLFAFGFDDSSILVHCPCTKKT--KAKL------K---GHQNRITCLAYSLSLNVLVSS 422 (608)
Q Consensus 369 ~~~~~~~~l~~~~~d~~i~vwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~l~s~ 422 (608)
++|+|+| ++.|..||++++|+...+.. ...+ . +|...|.++.|.+++.++++-
T Consensus 168 v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 168 FDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999 67789999999999887775 5555 2 367889999999999888763
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.34 E-value=4.9e-10 Score=113.48 Aligned_cols=245 Identities=8% Similarity=-0.025 Sum_probs=158.7
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEE
Q 007306 325 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKA 398 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~--~i~vwd~~~~~~~~ 398 (608)
.....++|+ ++++++.. ++.|++||..++......... .... ++|++++ .++++..++ .|.+++..++....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 457789998 55444444 689999999987776555443 2333 8999999 888887765 79999987665443
Q ss_pred Ee----eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee-eccCCCCccceEEEEEcCCCCEEEEE
Q 007306 399 KL----KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 399 ~~----~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~~~ 473 (608)
.+ ......+.+++++|++..|..+..++.|+.||..++... .+... ..+... ..+...++|+|++..|+++
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~---~~~~~~~~g~~~-~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT---LIKQLELSGSLG-TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE---EEEECCCCSCCC-CSSCCEEEEETTTTEEEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE---EEecccccCCCC-CCccccEEEeCCCCEEEEE
Confidence 33 214456788999995445555777889999999874321 11000 111110 0111389999965555553
Q ss_pred --eCCcEEEEECCCCceeeeecCCC-------------CCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEe
Q 007306 474 --HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 474 --~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~ 537 (608)
.++.|+.|+... . +..+.... .-.....++++++|+++++-+ .++.|+.|++.++.... +.
T Consensus 285 d~~~~~I~~~~~~g-~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~-~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDG-E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST-VA 361 (409)
T ss_dssp ETTTTEEEEECTTC-C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE-EE
T ss_pred eCCCCEEEEEecCC-C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE-Ee
Confidence 578899999753 3 22332210 024578999999999777777 78999999988886433 32
Q ss_pred ceeeccCCCcc------cccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 538 LTAYAQPGTIS------LELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 538 ~~~~~~~g~~~------~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
.... ..|..+ .-..+..++++| ++.++++-..++.|+.+++
T Consensus 362 g~~~-~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVD-VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTT-CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCC-CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 2100 001000 112356899999 6888888888889988765
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.34 E-value=2.4e-10 Score=114.68 Aligned_cols=238 Identities=17% Similarity=0.076 Sum_probs=156.8
Q ss_pred EEEEe--CCEEEEEe-----------CCcEEEEEcCCCceeeEecCC-------CCCeEEEEEcCCC-eEEEEeC--CCc
Q 007306 329 CFALR--GSHLFSAS-----------GGKISIFSLETFQTLATFANP-------PPIATYFILLPQD-LFAFGFD--DSS 385 (608)
Q Consensus 329 ~v~~s--~~~l~s~~-----------d~~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~-~l~~~~~--d~~ 385 (608)
.++++ +++++.+. ++.|.++|..+++.+..+.-. ......+.++||| +++++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 78888 66665553 568999999999998887532 1234578999999 8877764 578
Q ss_pred EEEEeCCCCceEEEeeCccccEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 386 ILVHCPCTKKTKAKLKGHQNRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 386 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
|.+.|+.+++.+..+..... ....|++ ..+++.+.||.+.+.+..+++...... ..+..+.. .....+.++
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~---p~~~~~~~~ 273 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDE---LLINHPAFS 273 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTS---CBCSCCEEC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCC---ceeeEeeec
Confidence 99999999998887764221 2333433 455666777877777774432211000 10111111 011235678
Q ss_pred CCCCEEEE-EeCCcEEEEECCCCce--eeeecCC--------CCCCCeEEEEEecCCCEEEEEEc----------CCeEE
Q 007306 465 PDQIHLLS-IHEGQIDVYEAPTLNH--TSQLVPD--------KMDLPITYATYSCDGKCIYVSCK----------SGHVK 523 (608)
Q Consensus 465 p~~~~l~~-~~d~~i~iwd~~~~~~--~~~~~~~--------~~~~~v~~~~~s~~~~~l~sg~~----------dg~i~ 523 (608)
+++..++. +..+.+.+.|...... +..+... ........++++|+++.+++... ++.|.
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 99887766 5678899999865432 1121110 00111223689999998777643 35799
Q ss_pred EEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEEEEe-CCCcEEEEeCCCCccc
Q 007306 524 VFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 586 (608)
Q Consensus 524 iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~v~iW~~~~~~~~ 586 (608)
+.|..+.+.+.++... .. ...++|+| |++ +++++. .++.|.++|+.+.+..
T Consensus 354 VID~~T~kvv~~I~vg---------~~--P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 354 VLNAETGERINKIELG---------HE--IDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp EEETTTCCEEEEEEEE---------EE--ECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EEECCCCeEEEEEECC---------CC--cCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 9999999999988642 12 33899999 787 788877 5899999999998764
No 219
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=5e-10 Score=113.41 Aligned_cols=234 Identities=10% Similarity=-0.015 Sum_probs=156.2
Q ss_pred CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 260 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
...+.++|+|+|+++++...++.|++||..++.. ..... ...... ++|+ ++.|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~---------------------~~~~~---~~~~~~-ia~~~~g~~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV---------------------TTVHP---GFKGGK-PAVTKDKQRV 185 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE---------------------EEEEE---TCCBCB-CEECTTSSEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE---------------------EEeec---cCCCCc-eeEecCCCcE
Confidence 4788999999999777777778998887765543 11110 112223 7888 7788
Q ss_pred EEEe-CC--cEEEEEcCCCceeeEe----cCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEE----eeCccc
Q 007306 338 FSAS-GG--KISIFSLETFQTLATF----ANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAK----LKGHQN 405 (608)
Q Consensus 338 ~s~~-d~--~i~vwd~~~~~~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~----~~~~~~ 405 (608)
+++. ++ .|.+|+...+.....+ ......+.+++++|++ .|+++..++.|+.||..++..... ..++..
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLG 265 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCC
T ss_pred EEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCC
Confidence 8877 55 7889988766554444 2244567789999954 555577788999999987754322 222222
Q ss_pred cE--EEEEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC------------CCccceEEEEEcCCCCEE
Q 007306 406 RI--TCLAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV------------PETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 406 ~v--~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------------~~~~~v~~v~~sp~~~~l 470 (608)
.- ..++|+|+ +.++++-..++.|+.|+.... +. ...++. ..-.....++++|+|+++
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-------~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ly 337 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-------CE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFY 337 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-------EE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEE
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-------EE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEE
Confidence 22 38999994 666777777899999997652 11 111110 000347899999999966
Q ss_pred EE-E-eCCcEEEEECCCCceeeeecCCC-------------CCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 471 LS-I-HEGQIDVYEAPTLNHTSQLVPDK-------------MDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 471 ~~-~-~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
++ . .++.|+.||..++... ++.... .-.....++++++|.++++-..++.|+.+++
T Consensus 338 vad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 338 IVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 66 4 5788999998777643 332210 0245889999999888888888888888765
No 220
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.31 E-value=3e-09 Score=104.36 Aligned_cols=216 Identities=12% Similarity=0.054 Sum_probs=139.6
Q ss_pred eEEEEEe--CCE-EEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEee
Q 007306 327 ISCFALR--GSH-LFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLK 401 (608)
Q Consensus 327 v~~v~~s--~~~-l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~ 401 (608)
..+..|+ ++. +++.. ++.|..||..+++.. .+. ....+.+++++++| ++++ +.+ .|.+||..+++......
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~~-gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-ECC-CEEEEECCCCcEEEEee
Confidence 4566777 344 44444 789999999877643 333 34578999999999 5554 444 59999998887543322
Q ss_pred C----ccccEEEEEEeCCCCEEEEEcC------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE
Q 007306 402 G----HQNRITCLAYSLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 402 ~----~~~~v~~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 471 (608)
. ....+++++++|+|+++++... .+.|..+| +++. .. +..+. .....++|+|+++.++
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~---~~---~~~~~----~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV---TK---LFADI----SIPNSICFSPDGTTGY 194 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE---EE---EEEEE----SSEEEEEECTTSCEEE
T ss_pred CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE---EE---eeCCC----cccCCeEEcCCCCEEE
Confidence 1 1246889999999997765432 24555555 3221 11 11111 2467899999999887
Q ss_pred EE--eCCcEEEEECC--CC-cee--eeec-CCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeecc
Q 007306 472 SI--HEGQIDVYEAP--TL-NHT--SQLV-PDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQ 543 (608)
Q Consensus 472 ~~--~d~~i~iwd~~--~~-~~~--~~~~-~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~ 543 (608)
.+ .++.|.+||+. ++ ... ..+. ..........++++++|.+.++...++.|.+|+. +++.+..+...
T Consensus 195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---- 269 (326)
T 2ghs_A 195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---- 269 (326)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS----
T ss_pred EEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC----
Confidence 64 46789999986 55 321 1121 1112455778999999998777777789999998 56666655421
Q ss_pred CCCcccccccEEEEEe-cCCCCEEEEEe
Q 007306 544 PGTISLELYPLVIAAH-PLEPNRIALGL 570 (608)
Q Consensus 544 ~g~~~~~v~~~~v~~s-p~d~~~las~s 570 (608)
.. .+.+++|+ | ++..|..++
T Consensus 270 ----~~--~~~~~af~g~-d~~~L~vt~ 290 (326)
T 2ghs_A 270 ----GK--QTTCPAFIGP-DASRLLVTS 290 (326)
T ss_dssp ----CS--BEEEEEEEST-TSCEEEEEE
T ss_pred ----CC--CcEEEEEecC-CCCEEEEEe
Confidence 22 25599998 7 666554444
No 221
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.31 E-value=4e-09 Score=103.50 Aligned_cols=224 Identities=12% Similarity=-0.046 Sum_probs=143.8
Q ss_pred cEEEEEEeeCCC-EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEE
Q 007306 261 RVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLF 338 (608)
Q Consensus 261 ~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~ 338 (608)
-..+.+|+|++. .+++...++.|..|+..++.. ..|. ....+.+++++ +..++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-----------~~~~--------------~~~~v~~i~~~~dg~l~ 104 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK-----------TVHA--------------LPFMGSALAKISDSKQL 104 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-----------EEEE--------------CSSCEEEEEEEETTEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-----------EEEE--------------CCCcceEEEEeCCCeEE
Confidence 346778999755 445555678888777655432 1111 23568899998 44444
Q ss_pred EEeCCcEEEEEcCCCceeeEecCC----CCCeEEEEEcCCC-eEEEEeC------CCcEEEEeCCCCceEEEeeCccccE
Q 007306 339 SASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFD------DSSILVHCPCTKKTKAKLKGHQNRI 407 (608)
Q Consensus 339 s~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~v 407 (608)
.+++..|.+||..+++........ ...+..++++|+| .+++... .+.|..++ +++... +..+....
T Consensus 105 v~~~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~ 181 (326)
T 2ghs_A 105 IASDDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIP 181 (326)
T ss_dssp EEETTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSE
T ss_pred EEECCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCccc
Confidence 455445999999888754332211 2357899999999 5544332 24666666 454433 32233457
Q ss_pred EEEEEeCCCCEEEE-EcCCCcEEEEECC--CC-ceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEE
Q 007306 408 TCLAYSLSLNVLVS-SGADAQLCVWDAV--GW-KKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYE 482 (608)
Q Consensus 408 ~~~~~~~~~~~l~s-~~~d~~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd 482 (608)
..++|+|+++.++. .+.++.|.+||+. ++ .......+. ...... .....++++++|.+.++. .++.|.+||
T Consensus 182 ~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~-~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 182 NSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI-DSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE-ECTTSS---SEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred CCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE-ECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 88999999987654 4567899999986 43 211111121 111122 356789999999877765 467899999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcC
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKS 519 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~~d 519 (608)
. +++.+..+..+ ...+++++|+ ++++.|+.++..
T Consensus 258 ~-~g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 258 T-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp T-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEEEBC
T ss_pred C-CCCEEEEEECC--CCCcEEEEEecCCCCEEEEEecC
Confidence 8 67777777543 5579999998 898877665543
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=2.3e-09 Score=107.68 Aligned_cols=285 Identities=9% Similarity=0.023 Sum_probs=176.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeE-EEEEeCCEEEEEe-CCcEEE
Q 007306 270 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-GGKISI 347 (608)
Q Consensus 270 ~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~l~s~~-d~~i~v 347 (608)
++..+++++.++.+..+|..+++. +|....+...... ......+. .+...+..++.++ ++.|..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~------------~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~~g~l~a 117 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKE------------IWSVSLAEKDGWF--SKEPALLSGGVTVSGGHVYIGSEKAQVYA 117 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEECCC---CC--SCCCCCEEEEEEEETTEEEEEETTSEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCce------------eeeecCccccccc--cccCcccccCceEeCCEEEEEcCCCEEEE
Confidence 456788888899999999888876 6653322110000 00022332 2333377777787 899999
Q ss_pred EEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccE-----EEEEEeCCCCEEEEE
Q 007306 348 FSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI-----TCLAYSLSLNVLVSS 422 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~ 422 (608)
+|..+|+.+............... .++.+++++.++.|..+|..+|+.+..+....... ...... +..++.+
T Consensus 118 ~d~~tG~~~W~~~~~~~~~~~p~~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g 194 (376)
T 3q7m_A 118 LNTSDGTVAWQTKVAGEALSRPVV-SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVG 194 (376)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEEC
T ss_pred EECCCCCEEEEEeCCCceEcCCEE-ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEE
Confidence 999999998877644322222222 23477888899999999999999887765432111 112222 3467778
Q ss_pred cCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC--CCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCC
Q 007306 423 GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP--DQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDL 499 (608)
Q Consensus 423 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp--~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 499 (608)
+.++.+..+|..+++........ ...+... ...+..+...| .+..+++ +.++.+..+|..+|+.+..... .
T Consensus 195 ~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~-~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----~ 268 (376)
T 3q7m_A 195 GDNGRVSAVLMEQGQMIWQQRIS-QATGSTE-IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----G 268 (376)
T ss_dssp CTTTEEEEEETTTCCEEEEEECC-C------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----C
T ss_pred cCCCEEEEEECCCCcEEEEEecc-cCCCCcc-cccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----C
Confidence 88999999999987654322221 0000000 00000000111 1344555 5789999999999998766642 2
Q ss_pred CeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEe
Q 007306 500 PITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIE 579 (608)
Q Consensus 500 ~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~ 579 (608)
....+.. ++..++.++.++.|+.+|..+|+.+...... + ..... .... .+..|..++.+|.|.++|
T Consensus 269 ~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-----~--~~~~~--~~~~---~~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 269 SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-----L--HRLLT--SPVL---YNGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-----T--TSCCC--CCEE---ETTEEEEECTTSEEEEEE
T ss_pred CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-----C--CCccc--CCEE---ECCEEEEEeCCCeEEEEE
Confidence 3344433 4678888889999999999999987765411 1 11111 1222 245788889999999999
Q ss_pred CCCCccccccCC
Q 007306 580 PLESEVEWGKLP 591 (608)
Q Consensus 580 ~~~~~~~~~~~~ 591 (608)
..+++..|....
T Consensus 335 ~~tG~~~~~~~~ 346 (376)
T 3q7m_A 335 VEDGRFVAQQKV 346 (376)
T ss_dssp TTTCCEEEEEEC
T ss_pred CCCCcEEEEEec
Confidence 999999887654
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=2.6e-10 Score=124.23 Aligned_cols=240 Identities=12% Similarity=0.093 Sum_probs=152.5
Q ss_pred CCCcEEEEEEeeCCCEEEEEeC-C----CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE
Q 007306 258 FGGRVVRLIYSHSGDFLVALTQ-T----ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL 332 (608)
Q Consensus 258 h~~~V~~~~fsp~g~~l~s~s~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 332 (608)
|...+..++|||||++||.+.. . ..|++||+.+++. +...+ +......++|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~---------------------~~~~~---~~~k~~~~~W 182 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP---------------------LETPL---KDVKFSGISW 182 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE---------------------EEEEE---EEEESCCCEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC---------------------Ccccc---CCceeccEEE
Confidence 5668899999999998885443 2 3566666665543 22111 1011234567
Q ss_pred e-CCEEEEEe-CC-------------cEEEEEcCCCce--eeEec--C-CCCCeEEEEEcCCC-eEEE-EeC---CCcEE
Q 007306 333 R-GSHLFSAS-GG-------------KISIFSLETFQT--LATFA--N-PPPIATYFILLPQD-LFAF-GFD---DSSIL 387 (608)
Q Consensus 333 s-~~~l~s~~-d~-------------~i~vwd~~~~~~--~~~~~--~-~~~~v~~~~~~~~~-~l~~-~~~---d~~i~ 387 (608)
+ ++.|+.++ +. .|++|++.++.. ...+. . +...+..+.|+||| .|+. .+. ++.|+
T Consensus 183 sDg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 183 LGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp ETTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred eCCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 7 77777777 53 399999987643 23333 2 34457789999999 5543 332 35899
Q ss_pred EEeCCCCc-eEEEeeCccccEEEEEEeCCCCEEEE-EcCC---CcEEEEECCCCceecccceeeeeccCCCCccceEEEE
Q 007306 388 VHCPCTKK-TKAKLKGHQNRITCLAYSLSLNVLVS-SGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 462 (608)
Q Consensus 388 vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 462 (608)
++|+.++. ....+..+....... ++++|..|+. ...+ +.|..+|+.++... ....+. .+. ..+. .
T Consensus 263 ~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~---~~~~l~-~~~---~~~~--~ 332 (693)
T 3iuj_A 263 VKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA---HWRDLI-PER---QQVL--T 332 (693)
T ss_dssp EEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG---GCEEEE-CCC---SSCE--E
T ss_pred EEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc---ccEEEe-cCC---CCEE--E
Confidence 99998763 345555565555555 6666665544 4333 67999999875421 122122 233 2333 8
Q ss_pred EcCCCCEEEE-E-eCC--cEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC----CeEEEEeCCCCcee
Q 007306 463 FHPDQIHLLS-I-HEG--QIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS----GHVKVFDTSTLELR 533 (608)
Q Consensus 463 ~sp~~~~l~~-~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d----g~i~iwd~~~~~~~ 533 (608)
|+++++.|+. . .++ .|++||+.. .....+..+ ....+..+.++++++.++....+ +.|+.||+.+++..
T Consensus 333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDATARVEQFDYEG-KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTS-CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEECCEEEEEEEECCeeEEEEEECCC-CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8999998887 3 444 689999864 444555432 24567778888898877766555 89999999888643
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.29 E-value=2e-10 Score=113.75 Aligned_cols=269 Identities=9% Similarity=-0.033 Sum_probs=169.0
Q ss_pred CcEEEEEEeeCCCEEEEEeC--CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCE
Q 007306 260 GRVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSH 336 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~ 336 (608)
..+..++++|+|+.+++... ++.++||.+.++.. .-|-.... ...++-..+..++++ ...
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-----------~~~p~~~~------~~~~~~~~p~gv~~d~~g~ 79 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-----------IPFPPQSG------NAIITFDTVLGIKSDGNGI 79 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-----------EESCCCCS------SCCCCCSCEEEEEECSSSE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-----------ecCCCccc------CcccceeEeeEEEEcCCCc
Confidence 67899999999998888642 34366666542221 11100000 011366789999999 454
Q ss_pred EEEEe-------CCcEEEEEcCCCceeeEecCC------CCCeEEEEEcCCC--eEEEEe---CCCcEEEEeCCCCceEE
Q 007306 337 LFSAS-------GGKISIFSLETFQTLATFANP------PPIATYFILLPQD--LFAFGF---DDSSILVHCPCTKKTKA 398 (608)
Q Consensus 337 l~s~~-------d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~--~l~~~~---~d~~i~vwd~~~~~~~~ 398 (608)
|+.+. ++.|.+||+.+++.+..+..+ ...+..+++++++ .+++.. .++.|.+||+.+++..+
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r 159 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR 159 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence 55544 368999999999877776532 2346789999865 445554 67899999999888777
Q ss_pred EeeCccccEE-EEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eC-
Q 007306 399 KLKGHQNRIT-CLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE- 475 (608)
Q Consensus 399 ~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d- 475 (608)
.+.+|..... ...+.++|..+.+.+.++.+..|. ..+..++|+|+|+.|+++ .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~-----------------------~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 160 VLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH-----------------------LGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp ECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC-----------------------CCEEEEEECTTSCEEEEEESSC
T ss_pred EecCCCcccccccceeECCEEEEeccCCCceecee-----------------------cccceeEeccCCCEEEEEeCCC
Confidence 6655432111 134455676676677777665442 135689999999988885 33
Q ss_pred CcEEEEECC---CCc-----eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCc
Q 007306 476 GQIDVYEAP---TLN-----HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI 547 (608)
Q Consensus 476 ~~i~iwd~~---~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~ 547 (608)
+.++.++.. .+. ....+...++......++++++|.++++...++.|.+||..+++.......
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--------- 287 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--------- 287 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC---------
Confidence 355555432 111 011111001133456789999999999998899999999966764332211
Q ss_pred ccccccEEEEEecCCCCEEEEEeCCCcEEEE
Q 007306 548 SLELYPLVIAAHPLEPNRIALGLTNGRVHVI 578 (608)
Q Consensus 548 ~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 578 (608)
....++.+++|.+ ++.++++.+..+.+.+|
T Consensus 288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp GGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred CceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 1123466999999 68888887755544333
No 225
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=1.5e-09 Score=105.48 Aligned_cols=225 Identities=8% Similarity=-0.015 Sum_probs=148.0
Q ss_pred CCCcEEEEEEeeCCC-EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--C
Q 007306 258 FGGRVVRLIYSHSGD-FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--G 334 (608)
Q Consensus 258 h~~~V~~~~fsp~g~-~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~ 334 (608)
.........|+|+|+ .+++...++.|..|+.. +.. ..+. .+...+..++++ |
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-----------~~~~-------------~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-----------DVLL-------------DATAFTNGNAVDAQQ 97 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-----------EEEE-------------ESCSCEEEEEECTTS
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-----------EEEe-------------CCCCccceeeECCCC
Confidence 455678899999999 45566667888887652 221 1111 244568889999 6
Q ss_pred CEEEEEe-CCcEEEEEcCCCceeeEecC----CCCCeEEEEEcCCC-eEEE----EeC-------------CCcEEEEeC
Q 007306 335 SHLFSAS-GGKISIFSLETFQTLATFAN----PPPIATYFILLPQD-LFAF----GFD-------------DSSILVHCP 391 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~-~l~~----~~~-------------d~~i~vwd~ 391 (608)
+++++.. ++.|.+|+.. ++....... ....+..++++++| .+++ |.. .+.|..+|.
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 6444444 5789999986 553322211 11345679999999 6665 332 357888888
Q ss_pred CCCceEEEeeCccccEEEEEEeCCCCEEEEEcCC------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcC
Q 007306 392 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHP 465 (608)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp 465 (608)
.+++..... .....+.++|+|+++.|+.+... +.|.+||+..........+. .... +....+++++
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~---~~~~---~~pdgi~~d~ 248 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA---SVPD---GLPDGFCVDR 248 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEE---CCSS---SCCCSEEECT
T ss_pred CCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE---ECCC---CCCCeEEECC
Confidence 777654433 34567889999999987777665 78999998764311111111 1111 3455789999
Q ss_pred CCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 007306 466 DQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGH 521 (608)
Q Consensus 466 ~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~ 521 (608)
+|++.++. .+.|.+|+. +++.+..+..+ ..+.+++|+++++.|+.++.++.
T Consensus 249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEE
T ss_pred CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeE
Confidence 99954444 445999998 67777777653 25889999999999988877643
No 226
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.25 E-value=3.4e-10 Score=111.36 Aligned_cols=294 Identities=11% Similarity=0.067 Sum_probs=184.4
Q ss_pred eEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeeccccee
Q 007306 224 SAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNME 303 (608)
Q Consensus 224 ~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (608)
.+..++.++.+..|| .+ ++.... ... +...+.++...++|. +..++.+ +..+|. +++.
T Consensus 32 ~l~v~t~~~~l~~~d-~~----g~~~~~-~~~--~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~---------- 89 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TD----GSVKWF-FKS--GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE---------- 89 (330)
T ss_dssp CEECSSTTTTTEEEC-TT----SCEEES-SCG--GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG----------
T ss_pred eEEEEcCCCEEEEEC-CC----CcEEEE-Eec--CCCcccceEEecCCc-EEEecCc--EEEECC-CCcE----------
Confidence 466677788888888 53 333221 111 234456777777776 4545444 666664 3332
Q ss_pred eEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeC
Q 007306 304 SQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFD 382 (608)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 382 (608)
+|.... .........+.+..+..++ ++.+..+|.. ++.......+...+.++...+++.++.++.
T Consensus 90 --~~~~~~-----------~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~ 155 (330)
T 3hxj_A 90 --KWRFDT-----------KKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSN 155 (330)
T ss_dssp --GGGSCC----------------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECT
T ss_pred --EEEEEC-----------CCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcC
Confidence 232211 1111122223366777787 8999999998 887777766655666777777776777888
Q ss_pred CCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEE
Q 007306 383 DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQ 462 (608)
Q Consensus 383 d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 462 (608)
++.|..+|.. ++....+......+.++...+++...+ ++ +.+..+| .+++.. ..... .. ..+.++.
T Consensus 156 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~-----~~~~~-~~---~~~~~~~ 221 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEK-----WNFYA-GY---WTVTRPA 221 (330)
T ss_dssp TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEE-----EEECC-SS---CCCSCCE
T ss_pred CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEE-----EEEcc-CC---cceeceE
Confidence 8999999998 887777765556677777878887554 44 8899999 554322 11111 11 3577888
Q ss_pred EcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec
Q 007306 463 FHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA 542 (608)
Q Consensus 463 ~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~ 542 (608)
..++|...+.+.++.+..+|. +++.+..+... ...+.++.+.+++ .|..++.+|.|+.+|. +++....+...
T Consensus 222 ~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~--- 293 (330)
T 3hxj_A 222 ISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG--- 293 (330)
T ss_dssp ECTTSCEEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS---
T ss_pred ECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC---
Confidence 899887777677888999985 66666665432 2333445555555 5667788889999996 67766655421
Q ss_pred cCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 543 QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 543 ~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
...+. ++...+ ++ .|..++.+|.+++......+
T Consensus 294 -----~~~~~--~~~~d~-~g-~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 294 -----SWIIA--TPVIDE-NG-TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp -----SCCCS--CCEECT-TC-CEEEECTTSCEEEEEC----
T ss_pred -----Ccccc--ceEEcC-CC-EEEEEcCCCeEEEEeccccc
Confidence 22233 566656 45 46668899999988776543
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=7.2e-10 Score=120.74 Aligned_cols=238 Identities=16% Similarity=0.141 Sum_probs=151.0
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--C----CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCC--------
Q 007306 322 DPKDSISCFALR--GSHLFSAS--G----GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDS-------- 384 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~--d----~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-------- 384 (608)
+|...+..++|| |++|+.+. . .+|++||+.+|+.+.... +......++|+ |+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 456678889999 77777544 2 469999999998655311 11112467899 99 787777663
Q ss_pred -----cEEEEeCCCCce--EEEee--C-ccccEEEEEEeCCCCEEEEEcC----CCcEEEEECCCCceecccceeeeecc
Q 007306 385 -----SILVHCPCTKKT--KAKLK--G-HQNRITCLAYSLSLNVLVSSGA----DAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 385 -----~i~vwd~~~~~~--~~~~~--~-~~~~v~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
.|++|++.++.. ...+. . |...+.++.|+|||++|+.... +..|+++|+.++.. ....+. .
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~----~~~~l~-~ 278 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA----PLLTVQ-G 278 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC----CCEEEE-C
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC----ceEEEe-C
Confidence 499999987642 22333 2 3445788999999998765432 35899999977431 122122 2
Q ss_pred CCCCccceEEEEEcCCCCEEEE-Ee----CCcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC---
Q 007306 451 LVPETTIVNHIQFHPDQIHLLS-IH----EGQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--- 520 (608)
Q Consensus 451 ~~~~~~~v~~v~~sp~~~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg--- 520 (608)
+. ...... ++++|..|+. +. .+.|..+|+.++.. ...+.. |...+. .|++++++|+....++
T Consensus 279 ~~---~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~--~~~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 279 DL---DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP--ERQQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp SS---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC--CCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred CC---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec--CCCCEE--EEEEECCEEEEEEEECCee
Confidence 22 233343 6777777665 42 25799999987654 234443 234444 8999999888766544
Q ss_pred eEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCcc
Q 007306 521 HVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN----GRVHVIEPLESEV 585 (608)
Q Consensus 521 ~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D----g~v~iW~~~~~~~ 585 (608)
.|++|++..+. ...+... + .. ++..++++| ++..++....+ ++|+.||+.+++.
T Consensus 351 ~l~~~d~~g~~-~~~l~~p-----~--~~--~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 351 RVEQFDYEGKR-VREVALP-----G--LG--SVSGFNGKH-DDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEEECTTSCE-EEEECCS-----S--SS--EEEECCCCT-TCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEEECCCCe-eEEeecC-----C--Cc--eEEeeecCC-CCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 78999988554 3333211 1 11 233677788 45555444333 7999999988764
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=7.1e-10 Score=109.79 Aligned_cols=273 Identities=10% Similarity=0.026 Sum_probs=164.4
Q ss_pred eeEeecCCCCeEEEee--cCCeEEEeeccCCCCCCceeeEe---ecCCCCCCcEEEEEEeeCCCEEEEEeC-----CCcE
Q 007306 214 RESTSLPDADSAVCAK--SLEKSVNLKLQLINEPSECRTLL---LPDNSFGGRVVRLIYSHSGDFLVALTQ-----TATH 283 (608)
Q Consensus 214 ~~~~~s~dg~~l~~~~--~d~~i~iWd~~~~~~~~~~~~~~---l~~~~h~~~V~~~~fsp~g~~l~s~s~-----dg~i 283 (608)
..+.++|+|+.+++.. .++.+++|.+.+ +....+. ....+|...+..++|+++|+++++-.. ++.|
T Consensus 20 ~~va~~~~g~~~v~~~~~~~~~~~l~~~~~----g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 20 GNITLTPDGRLFLSLHQFYQPEMQVAELTQ----DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp EEEEECTTSCEEEEECGGGCCSCSEEEEET----TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred ceEEECCCCCEEEEeCCCCCCceEEEEECC----CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 3457999999988864 234467777652 3333210 011236678999999999986665433 4678
Q ss_pred EEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEE-----eCCcEEEEEcCCCcee
Q 007306 284 KLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSA-----SGGKISIFSLETFQTL 356 (608)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~-----~d~~i~vwd~~~~~~~ 356 (608)
.+||..+++.. ..+...... ..+...+..++++ +..++.+ .++.|.+||+.+++..
T Consensus 96 ~~~d~~tg~~~----------~~~~~~~~~-------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~ 158 (343)
T 2qe8_A 96 VAWDTLNNQLS----------RVIYLPPPI-------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA 158 (343)
T ss_dssp EEEETTTTEEE----------EEEECCTTT-------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE
T ss_pred EEEECCCCeEE----------EEEECChhh-------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE
Confidence 87877666531 122211000 0133456788998 4454443 2478999999999887
Q ss_pred eEecCCCCCeE-EEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC-cEEEEEC
Q 007306 357 ATFANPPPIAT-YFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-QLCVWDA 433 (608)
Q Consensus 357 ~~~~~~~~~v~-~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~i~vwd~ 433 (608)
+.+..|..... ...+.++| .+.+.+.++.+..|. ..+..++|+|+|+.|+++..++ .+..++.
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 77765432110 13445577 677777777776553 2367899999999888887766 4444443
Q ss_pred CC---Cceecccceeee-eccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEec
Q 007306 434 VG---WKKLCSKFLHSF-QTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 434 ~~---~~~~~~~~~~~~-~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 508 (608)
.. +..........+ ..++. +....++++++|.++++. .++.|.+||..+++....... .+.....+++|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~-~~~~~p~~va~~~ 300 (343)
T 2qe8_A 225 ADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD-EKLSWTDSFNFGS 300 (343)
T ss_dssp HHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC-GGGSCEEEEEECT
T ss_pred HHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC-CceecCCeeEECC
Confidence 21 100000000000 11222 234578999999888874 778999999866664333322 1245789999999
Q ss_pred CCCEEEEEEcCCeEEEE
Q 007306 509 DGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iw 525 (608)
+|.++++.+..+.+.+|
T Consensus 301 ~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 301 DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp TSCEEEEECCGGGSGGG
T ss_pred CCcEEEEeCcccccccc
Confidence 99888777655444333
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.21 E-value=7.3e-13 Score=132.58 Aligned_cols=225 Identities=16% Similarity=0.046 Sum_probs=131.4
Q ss_pred CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccc-cEE-E
Q 007306 334 GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQN-RIT-C 409 (608)
Q Consensus 334 ~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~-~ 409 (608)
+..+++++ |+.|..||..+|+.+..+.. +.+.+..+..++ .+++++.|+.|+.||..+|+.+..+..+.. .+. +
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 67888888 99999999999999998876 445555556677 888888999999999999988766654321 110 1
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCce
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNH 488 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~ 488 (608)
..+. ++..+++++.|+.++.||..+++...... .+ . ...++|++..+++ +.++.|+.||.++|+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~------~~----~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS------SA----F---ADSLSPSTSLLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC-----------------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec------CC----C---cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence 1111 34567778889999999999865432211 11 1 2345667777777 5889999999999988
Q ss_pred eeeecCCCCCCCeEEEEEecCC---CEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCE
Q 007306 489 TSQLVPDKMDLPITYATYSCDG---KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNR 565 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~---~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~ 565 (608)
+..+.... ....+++.+. ..+++++.||.|+.||..+|+.+...... . .+. ....+++ ++..
T Consensus 153 ~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--------~-pv~-~~~~~~~-dg~~ 217 (369)
T 2hz6_A 153 RWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA--------S-PVV-AFYVWQR-EGLR 217 (369)
T ss_dssp CCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS--------S-CEE-EEEECTT-SSCE
T ss_pred EEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC--------C-ceE-EEEEecC-CceE
Confidence 76654321 1223333332 56778889999999999999988776531 1 121 1334445 4532
Q ss_pred E----EEEeCCCcEEEEeCCCCc----cccccCC
Q 007306 566 I----ALGLTNGRVHVIEPLESE----VEWGKLP 591 (608)
Q Consensus 566 l----as~s~Dg~v~iW~~~~~~----~~~~~~~ 591 (608)
. +.+ ++.++.+|..+|+ ..|....
T Consensus 218 ~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~ 249 (369)
T 2hz6_A 218 KVMHINVA--VETLRYLTFMSGEVGRITKWKYPF 249 (369)
T ss_dssp EECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred eccceeec--ccceeeeehhcCCcccceeeeecc
Confidence 2 222 4567888888888 7787653
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.21 E-value=4.7e-09 Score=101.97 Aligned_cols=224 Identities=12% Similarity=-0.010 Sum_probs=145.7
Q ss_pred CCCCeEEEEEe--CC-EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE
Q 007306 323 PKDSISCFALR--GS-HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK 397 (608)
Q Consensus 323 ~~~~v~~v~~s--~~-~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~ 397 (608)
.........|+ ++ ++++.. ++.|..|+. +++ ...+..+...+..++++++| ++++...++.|.+|+.. ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 44556788898 66 455555 789999998 454 34555566778899999999 66655556889999986 5533
Q ss_pred EEee---C-ccccEEEEEEeCCCCEEEE----EcC-------------CCcEEEEECCCCceecccceeeeeccCCCCcc
Q 007306 398 AKLK---G-HQNRITCLAYSLSLNVLVS----SGA-------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETT 456 (608)
Q Consensus 398 ~~~~---~-~~~~v~~~~~~~~~~~l~s----~~~-------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 456 (608)
.... + ....+++++++|+|+++++ |.. .+.|..||..+++.. . +. +. .
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~-----~-~~-~~----~ 188 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ-----R-MA-DL----D 188 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE-----E-EE-EE----S
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE-----E-Ee-cC----C
Confidence 2221 1 1234678999999998886 332 256777777654321 1 11 11 3
Q ss_pred ceEEEEEcCCCCEEEEE-eC------CcEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeC
Q 007306 457 IVNHIQFHPDQIHLLSI-HE------GQIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDT 527 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~-~d------~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~ 527 (608)
....++|+|+++.|+++ .. +.|++|++..+.. ...+... .......++++++|++.+ ++.+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~-~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV-PDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC-SSSCCCSEEECTTSCEEE-CCSS-EEEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC-CCCCCCeEEECCCCCEEE-ecCC-cEEEECC
Confidence 46789999999988774 33 6899999865431 1112111 134456789999999544 4444 5999998
Q ss_pred CCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEE
Q 007306 528 STLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVH 576 (608)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~ 576 (608)
.++.+..+... . . +.+++|+| +++.|..++.++..+
T Consensus 266 -~g~~~~~~~~~--------~-~--~~~~~f~~-d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 -DGQLLGHIPTP--------G-T--ASNCTFDQ-AQQRLFITGGPCLWM 301 (305)
T ss_dssp -TSCEEEEEECS--------S-C--CCEEEECT-TSCEEEEEETTEEEE
T ss_pred -CCCEEEEEECC--------C-c--eeEEEEeC-CCCEEEEEcCCeEEE
Confidence 46666666432 2 2 44899998 787787777765433
No 231
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.19 E-value=6.8e-10 Score=109.57 Aligned_cols=262 Identities=8% Similarity=-0.034 Sum_probs=162.3
Q ss_pred eEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe----------CCCcEEEEecCCCcceeeecccce
Q 007306 233 KSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT----------QTATHKLWKWQSNKQSLEEENVNM 302 (608)
Q Consensus 233 ~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s----------~dg~i~iw~~~~~~~~~~~~~~~~ 302 (608)
+|.+.|..+ .+.... ++. -..+ .++|||||++++.+. .++.|.+||..+.+....
T Consensus 47 ~vsvID~~t----~~v~~~-i~v--G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~------ 111 (368)
T 1mda_H 47 ENWVSCAGC----GVTLGH-SLG--AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD------ 111 (368)
T ss_dssp EEEEEETTT----TEEEEE-EEE--CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE------
T ss_pred eEEEEECCC----CeEEEE-EeC--CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE------
Confidence 788999874 333321 222 1334 799999999998886 367888887776664211
Q ss_pred eeEEeeCC-CCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C--CcEEE--EEcCCCceeeEecCCCCCeEEEEEcCC
Q 007306 303 ESQLYQPS-SKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--GKISI--FSLETFQTLATFANPPPIATYFILLPQ 374 (608)
Q Consensus 303 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d--~~i~v--wd~~~~~~~~~~~~~~~~v~~~~~~~~ 374 (608)
.... .+... .......++++ |++++++. . ..+.+ +|+.+ +..+.... |..+.|+
T Consensus 112 ----I~v~~~~~~~-------~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~----~~~~~p~ 173 (368)
T 1mda_H 112 ----IELPDAPRFS-------VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS----CFHIHPG 173 (368)
T ss_dssp ----EEETTSCSCC-------BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS----CCCCEEE
T ss_pred ----EECCCccccc-------cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC----ceEEccC
Confidence 0000 00000 01234467888 77888776 3 56888 99877 44443211 1223455
Q ss_pred C--eEEEEeCCCcEEEEeCCC-----CceEE----EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 375 D--LFAFGFDDSSILVHCPCT-----KKTKA----KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 375 ~--~l~~~~~d~~i~vwd~~~-----~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
+ .+++.+.|+.+.+.|+.+ ++... .+.....+. . .+++..++..+. +.+.+.|..+........
T Consensus 174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 5 556667788888888876 43321 111112233 3 677777666667 999999986532110011
Q ss_pred eeeee------ccCCCCccceEEEEEcCCCCEEEEE-e-C--------CcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 007306 444 LHSFQ------TGLVPETTIVNHIQFHPDQIHLLSI-H-E--------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 444 ~~~~~------~~~~~~~~~v~~v~~sp~~~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
+. +. .+..+ .....++++|+++.++++ . . +.+.++|+.+++.+.++..+ .....++|+
T Consensus 249 ~~-~~~~~~~~~~~~p--~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s 322 (368)
T 1mda_H 249 ID-GNESGRKADNFRS--AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAA 322 (368)
T ss_dssp CC-SSCTHHHHTTEEE--CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEEC
T ss_pred EE-ecccccccccccc--CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEEC
Confidence 11 00 01000 112226899999988874 3 2 35779999999999888753 368899999
Q ss_pred cCCCE-EEEEE-cCCeEEEEeCCCCceeEEEec
Q 007306 508 CDGKC-IYVSC-KSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 508 ~~~~~-l~sg~-~dg~i~iwd~~~~~~~~~~~~ 538 (608)
|||+. +++.. .++.|.++|+.+++.+..+..
T Consensus 323 ~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp CSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred CCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence 99985 55555 489999999999999988763
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=123.54 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=107.2
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeecc-CCCC
Q 007306 376 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTG-LVPE 454 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~ 454 (608)
.+++++.|+.|+.||..+|+.+..+.. ..+.+..+.+++..+++++.|+.|+.||..+++........ .... ..
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~-~~~~~~~-- 85 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT-IPELVQA-- 85 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC-HHHHHTT--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc-Ccccccc--
Confidence 889999999999999999999988875 45555556667878888889999999999886543211111 0000 00
Q ss_pred ccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCcee
Q 007306 455 TTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELR 533 (608)
Q Consensus 455 ~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~ 533 (608)
.+ .+.. +..+++ +.++.++.||..+|+.+..+..+ . ...++|++..+++++.|+.|+.||..+|+.+
T Consensus 86 -sp----~~~~-~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~--~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 86 -SP----CRSS-DGILYMGKKQDIWYVIDLLTGEKQQTLSSA--F----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -CS----CC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -Cc----eEec-CCEEEEEeCCCEEEEEECCCCcEEEEecCC--C----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11 1112 334555 68899999999999988777542 1 2345678899999999999999999999988
Q ss_pred EEEeceeeccCCCcccccccEEEEEecCCC---CEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 534 CQINLTAYAQPGTISLELYPLVIAAHPLEP---NRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 534 ~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~---~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
..+..... . ..++.+ +. ..+++++.||.|+.||..+++..|...
T Consensus 154 W~~~~~~~----------~--~~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYFDY----------A--ASLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEEEE----------C--CBCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecccc----------c--CccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 77653211 0 122222 21 467778899999999999999999764
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.15 E-value=1e-09 Score=108.36 Aligned_cols=228 Identities=10% Similarity=-0.045 Sum_probs=143.6
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCCceEEEeeCc-------cc
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----------DDSSILVHCPCTKKTKAKLKGH-------QN 405 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~----------~d~~i~vwd~~~~~~~~~~~~~-------~~ 405 (608)
+|.++|..+++.+.++.....+ .+.++||+ .++++. .++.|.+||+.+++.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999999855555 79999999 777765 4689999999999999887633 12
Q ss_pred cEEEEEEeCCCCEEEEEcC--CCcEEE--EECCCCceecc-cceeeeeccCCC-----CccceEEEEE------------
Q 007306 406 RITCLAYSLSLNVLVSSGA--DAQLCV--WDAVGWKKLCS-KFLHSFQTGLVP-----ETTIVNHIQF------------ 463 (608)
Q Consensus 406 ~v~~~~~~~~~~~l~s~~~--d~~i~v--wd~~~~~~~~~-~~~~~~~~~~~~-----~~~~v~~v~~------------ 463 (608)
....++++|||++++++.. +..+.+ +|..+-..... .+......+... ..+.+..+..
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~ 204 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEE
Confidence 3567899999999888864 467888 88865100000 000000000000 0000000100
Q ss_pred --------------cCCCCEEE-EEeCCcEEEEECCCCc--eeeeecCCC-----C---CCCeEEEEEecCCCEEEEEEc
Q 007306 464 --------------HPDQIHLL-SIHEGQIDVYEAPTLN--HTSQLVPDK-----M---DLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 464 --------------sp~~~~l~-~~~d~~i~iwd~~~~~--~~~~~~~~~-----~---~~~v~~~~~s~~~~~l~sg~~ 518 (608)
++++..++ ++. +.+.+.|..+.. .+..+.... + ......++++||++.++.+..
T Consensus 205 ~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 205 QCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred EeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEec
Confidence 23333333 344 677777775432 222221100 0 011112689999998887643
Q ss_pred -C--------CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEEEEe-CCCcEEEEeCCCCccc
Q 007306 519 -S--------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL-TNGRVHVIEPLESEVE 586 (608)
Q Consensus 519 -d--------g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s-~Dg~v~iW~~~~~~~~ 586 (608)
+ +.+.++|+.+++.+..+... . . +..++|+| |+. .+++.. .++.|.++|+.+.+..
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--------~-~--p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPISNG--------H-D--SDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEEE--------E-E--ECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEECC--------C-C--cceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 2 35669999999988887642 1 2 33899999 665 667777 5999999999998764
No 234
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.15 E-value=3.6e-08 Score=97.60 Aligned_cols=227 Identities=16% Similarity=0.148 Sum_probs=142.8
Q ss_pred CCEEEEEe--CCcEEEEEcCCC----ceeeEec-------CCCCCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCC
Q 007306 334 GSHLFSAS--GGKISIFSLETF----QTLATFA-------NPPPIATYFILLPQD-LFAFGFDD------SSILVHCPCT 393 (608)
Q Consensus 334 ~~~l~s~~--d~~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~-~l~~~~~d------~~i~vwd~~~ 393 (608)
.++|+..+ ++.|.++|+.+. +..++++ ........+..+|+| ++ ++..+ +.|.++|..+
T Consensus 95 r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~V-s~~g~~~g~~~g~v~vlD~~T 173 (462)
T 2ece_A 95 RRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYI-SALGNEEGEGPGGILMLDHYS 173 (462)
T ss_dssp SCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEE-EEEEETTSCSCCEEEEECTTT
T ss_pred CCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEE-EcCCCcCCCCCCeEEEEECCC
Confidence 56777666 799999999765 5666663 111234567888999 44 33333 6899999999
Q ss_pred CceEEEeeCcc---ccEEEEEEeCCCCEEEEEc-------------------CCCcEEEEECCCCceecccceeeeeccC
Q 007306 394 KKTKAKLKGHQ---NRITCLAYSLSLNVLVSSG-------------------ADAQLCVWDAVGWKKLCSKFLHSFQTGL 451 (608)
Q Consensus 394 ~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~-------------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 451 (608)
++.+..+.... ..-..+.|+|+++.+++.. .+.+|.+||+.+++ .++++..+.
T Consensus 174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-----~~~tI~vg~ 248 (462)
T 2ece_A 174 FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-----RIHSLTLGE 248 (462)
T ss_dssp CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-----EEEEEESCT
T ss_pred CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-----EeeEEecCC
Confidence 99998886321 2234578899999888874 36899999999843 233233321
Q ss_pred CCCccceEEEEE--cCCCCEEEEE-e------CCcEEEEECCCCce--eeeecCCC----------------CCCCeEEE
Q 007306 452 VPETTIVNHIQF--HPDQIHLLSI-H------EGQIDVYEAPTLNH--TSQLVPDK----------------MDLPITYA 504 (608)
Q Consensus 452 ~~~~~~v~~v~~--sp~~~~l~~~-~------d~~i~iwd~~~~~~--~~~~~~~~----------------~~~~v~~~ 504 (608)
.. .....+.| +|++++++++ . +++|.+|....+.. .+.+.... -......+
T Consensus 249 ~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 249 EN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp TE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 10 23455656 9999998873 3 45777766544321 11110000 02457789
Q ss_pred EEecCCCEEEEEEc-CCeEEEEeCCC---CceeEEEeceeec-----cCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 505 TYSCDGKCIYVSCK-SGHVKVFDTST---LELRCQINLTAYA-----QPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 505 ~~s~~~~~l~sg~~-dg~i~iwd~~~---~~~~~~~~~~~~~-----~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.+|+||++|+++.. .+.|.+||+.. .+++..+...... +.|. .-......++++| |+++|.++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence 99999999998876 58999999863 2444443321000 0000 0001234799999 788888887
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=6.3e-09 Score=106.72 Aligned_cols=240 Identities=9% Similarity=0.038 Sum_probs=160.6
Q ss_pred EEEEEe-----CCEEEEEe--CCcEEEEEcCCCceeeEecCC-CCCeEEEEE-c-CCC-eEEEEe---------------
Q 007306 328 SCFALR-----GSHLFSAS--GGKISIFSLETFQTLATFANP-PPIATYFIL-L-PQD-LFAFGF--------------- 381 (608)
Q Consensus 328 ~~v~~s-----~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~-~l~~~~--------------- 381 (608)
-.+++. |++++.+. ++.|.+.|+.+.++.+.+.-. ......+++ + |++ ++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 455553 67777777 578999999999988866533 345778887 5 888 777764
Q ss_pred ---CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC--------------------------------
Q 007306 382 ---DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA-------------------------------- 426 (608)
Q Consensus 382 ---~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-------------------------------- 426 (608)
.++.+.+.|..+.+...++.--. ....++++|+|+++++.+.+.
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~G 248 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 248 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred ccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCC
Confidence 34589999999998887776322 346678999999988887553
Q ss_pred ------cEEEEECCCCceecccc-eeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCc----------
Q 007306 427 ------QLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN---------- 487 (608)
Q Consensus 427 ------~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~---------- 487 (608)
.|.+.|..+.+ ... +..+..+. ...++.++|||++++++ .+++|.++|+.+.+
T Consensus 249 k~~~i~~V~VID~~~~~---~~~~~~~Ipvg~-----~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~ 320 (595)
T 1fwx_A 249 DYQELNGVKVVDGRKEA---SSLFTRYIPIAN-----NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR 320 (595)
T ss_dssp CSEEETTEEEEECSGGG---CCSSEEEEEEES-----SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred CeeEECcEEEEeCcccC---CceeEEEEecCC-----CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence 35566665411 011 22233332 34579999999999984 67899999998653
Q ss_pred --eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC----------CceeEEEeceeeccCCCcccccccEE
Q 007306 488 --HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST----------LELRCQINLTAYAQPGTISLELYPLV 555 (608)
Q Consensus 488 --~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~g~~~~~v~~~~ 555 (608)
.+..... ......++|+|+|....+...|+.|.+||+.+ .+.+.++..+- ..||... ..+
T Consensus 321 ~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y--qpGh~~~---~~g 392 (595)
T 1fwx_A 321 SAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY--QPGHLKT---VMG 392 (595)
T ss_dssp GGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS--CEEEEEE---TTT
T ss_pred cceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc--cccccee---ccc
Confidence 2333322 56688999999994444556689999999987 44555554321 1122110 113
Q ss_pred EEEecCCCCEEEEEeC---CCc----------EEEEeCCCCcc
Q 007306 556 IAAHPLEPNRIALGLT---NGR----------VHVIEPLESEV 585 (608)
Q Consensus 556 v~~sp~d~~~las~s~---Dg~----------v~iW~~~~~~~ 585 (608)
...+| ||++|+++.. |.. -.++|+..++-
T Consensus 393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 35678 7999988863 432 17889866554
No 236
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.12 E-value=2e-08 Score=108.27 Aligned_cols=291 Identities=12% Similarity=0.080 Sum_probs=181.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCC-CCe-EEEEEeCCEEEEEe-CCcEEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPK-DSI-SCFALRGSHLFSAS-GGKISI 347 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v-~~v~~s~~~l~s~~-d~~i~v 347 (608)
+..++.++.++.+.-+|..+++. +|............ ... ..+ ..+++.+..++.++ |+.|..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 131 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKE------------LWRYDPEVAKVKAR--TSCCDAVNRGVALWGDKVYVGTLDGRLIA 131 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCE------------EEEECCCCCGGGGG--GCTTCSCCCCCEEEBTEEEEECTTSEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChh------------ceEECCCCCccccc--cccccCCccceEEECCEEEEEcCCCEEEE
Confidence 45678888889999999988886 77754332111000 000 011 12344566777777 999999
Q ss_pred EEcCCCceeeEecCCC----CCeEE-EEEcCCCeEEEEeC------CCcEEEEeCCCCceEEEeeCcc------------
Q 007306 348 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQ------------ 404 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~------------ 404 (608)
+|..+|+.+..+.... ..+.+ ..+ .++.++++.. ++.|..+|..+|+.+..+....
T Consensus 132 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~ 210 (668)
T 1kv9_A 132 LDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPEL 210 (668)
T ss_dssp EETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHH
T ss_pred EECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccc
Confidence 9999999998876421 11111 111 1444555443 5899999999999987775210
Q ss_pred -------------------ccEEEEEEeCCCCEEEEEcCCC-------------------cEEEEECCCCceecccceee
Q 007306 405 -------------------NRITCLAYSLSLNVLVSSGADA-------------------QLCVWDAVGWKKLCSKFLHS 446 (608)
Q Consensus 405 -------------------~~v~~~~~~~~~~~l~s~~~d~-------------------~i~vwd~~~~~~~~~~~~~~ 446 (608)
.....++++|+...++.++.++ .|..+|.++++........
T Consensus 211 ~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~- 289 (668)
T 1kv9_A 211 REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT- 289 (668)
T ss_dssp HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-
T ss_pred ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-
Confidence 0112468888888888887766 3999999997654332211
Q ss_pred eeccCCC----CccceEEEEEcCCCC---EEEE-EeCCcEEEEECCCCceeeeecCCCC----------CCC--------
Q 007306 447 FQTGLVP----ETTIVNHIQFHPDQI---HLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------DLP-------- 500 (608)
Q Consensus 447 ~~~~~~~----~~~~v~~v~~sp~~~---~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~----------~~~-------- 500 (608)
.|.. ...+.....+..+|+ .++. +.+|.++++|..+|+.+........ ..+
T Consensus 290 ---~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 290 ---PGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp ---TTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred ---CCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 1100 001222223334665 4555 5889999999999998744322110 000
Q ss_pred ----------------eEEEEEecCCCEEEEEE------------------------------------cCCeEEEEeCC
Q 007306 501 ----------------ITYATYSCDGKCIYVSC------------------------------------KSGHVKVFDTS 528 (608)
Q Consensus 501 ----------------v~~~~~s~~~~~l~sg~------------------------------------~dg~i~iwd~~ 528 (608)
-..++++|+...++... .+|.|+.||+.
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 11267888877766421 23789999999
Q ss_pred CCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccCCC
Q 007306 529 TLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~ 592 (608)
+|+.+...... . ..+ ...... .+.+++.++.||.|+.||..+++..|....+
T Consensus 447 tG~~~W~~~~~--------~-~~~--~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 447 KQKAAWKVPYP--------T-HWN--GGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp TTEEEEEEEES--------S-SCC--CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcEEEEccCC--------C-CCc--CceeEe-CCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 99988876532 1 112 222333 4678889999999999999999999987655
No 237
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.06 E-value=7e-08 Score=104.07 Aligned_cols=289 Identities=13% Similarity=0.087 Sum_probs=178.4
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceee-EeecCCC-----CC-CcE-EEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRT-LLLPDNS-----FG-GRV-VRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~-~~l~~~~-----h~-~~V-~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
+..++.++.++.|.-+|..+ ++.+. +.+.... .. ..+ ..+++ .+..++.++.|+.+..+|..+++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 139 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAAS----GKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKA 139 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEECCCCeEEEEECCC----ChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCE
Confidence 55667777788888888874 33322 1111100 00 000 11222 355788888999999999999886
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeE-EEEEeCCEEEEEe-------CCcEEEEEcCCCceeeEecCCC--
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS-------GGKISIFSLETFQTLATFANPP-- 363 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~l~s~~-------d~~i~vwd~~~~~~~~~~~~~~-- 363 (608)
+|....+... ....+. .....+..++.+. +|.|..+|..+|+.+..+....
T Consensus 140 ------------~W~~~~~~~~-------~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 200 (668)
T 1kv9_A 140 ------------IWSQQTTDPA-------KPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGD 200 (668)
T ss_dssp ------------EEEEECSCTT-------SSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred ------------eeeeccCCCC-------CcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCC
Confidence 6764332100 000111 1112344555553 3789999999999998875311
Q ss_pred -C----------------------------CeEEEEEcCCC-eEEEEeCCC-------------------cEEEEeCCCC
Q 007306 364 -P----------------------------IATYFILLPQD-LFAFGFDDS-------------------SILVHCPCTK 394 (608)
Q Consensus 364 -~----------------------------~v~~~~~~~~~-~l~~~~~d~-------------------~i~vwd~~~~ 394 (608)
. ....+++.|++ .++.+..++ .|..+|..+|
T Consensus 201 p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG 280 (668)
T 1kv9_A 201 PALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG 280 (668)
T ss_dssp TTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred CCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC
Confidence 0 01246788877 777777665 4999999999
Q ss_pred ceEEEeeC--cc-------ccEEEEEEeCCCC---EEEEEcCCCcEEEEECCCCceecccceee-----ee---------
Q 007306 395 KTKAKLKG--HQ-------NRITCLAYSLSLN---VLVSSGADAQLCVWDAVGWKKLCSKFLHS-----FQ--------- 448 (608)
Q Consensus 395 ~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~--------- 448 (608)
+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+++......+.. -.
T Consensus 281 ~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~ 360 (668)
T 1kv9_A 281 KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE 360 (668)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE
T ss_pred ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccc
Confidence 99887764 22 2233333344665 68889999999999999987652211110 00
Q ss_pred ------ccCC----CC---ccceEEEEEcCCCCEEEEE-------------------------------------eCCcE
Q 007306 449 ------TGLV----PE---TTIVNHIQFHPDQIHLLSI-------------------------------------HEGQI 478 (608)
Q Consensus 449 ------~~~~----~~---~~~v~~v~~sp~~~~l~~~-------------------------------------~d~~i 478 (608)
.+.. |. ...-..++++|+...+++. .++.|
T Consensus 361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l 440 (668)
T 1kv9_A 361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL 440 (668)
T ss_dssp CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence 0000 00 0000126788887666641 12679
Q ss_pred EEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 479 DVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 479 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
..||..+++.+-++.. ..+.....+...+.+++.|+.||.|+.||..+|+.+..+..
T Consensus 441 ~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 9999999998877654 23333445566788999999999999999999999988864
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=2e-09 Score=105.73 Aligned_cols=265 Identities=12% Similarity=0.093 Sum_probs=168.0
Q ss_pred EEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEeCCc
Q 007306 266 IYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSASGGK 344 (608)
Q Consensus 266 ~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~d~~ 344 (608)
.+..+|. +..++.++.+..|| .+++. +|.... +...+.++... +..+..++++
T Consensus 26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~------------~~~~~~-----------~~~~~~~~~~~~~g~l~v~t~~- 79 (330)
T 3hxj_A 26 ILAKNGT-IYLGSSNKNLYAIN-TDGSV------------KWFFKS-----------GEIIECRPSIGKDGTIYFGSDK- 79 (330)
T ss_dssp EECTTSC-EECSSTTTTTEEEC-TTSCE------------EESSCG-----------GGEEEECCEETTTTEECCSSCE-
T ss_pred eEccCCe-EEEEcCCCEEEEEC-CCCcE------------EEEEec-----------CCCcccceEEecCCcEEEecCc-
Confidence 3445665 66777788888888 66554 454321 12234455555 5667777745
Q ss_pred EEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcC
Q 007306 345 ISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA 424 (608)
Q Consensus 345 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 424 (608)
+..+|. +++.+..+...........+. ++.+.+++.++.|..+|.. ++.......+...+.++...+++. +..++.
T Consensus 80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~ 155 (330)
T 3hxj_A 80 VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSN 155 (330)
T ss_dssp EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECT
T ss_pred EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcC
Confidence 888886 666655544333323333333 4477888889999999998 877766665555566777777776 555777
Q ss_pred CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEE
Q 007306 425 DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYA 504 (608)
Q Consensus 425 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 504 (608)
++.|..+|.. ++..... .. .. ..+.++.+.+++...+.+ +.+..+| .+++....+... ...+.++
T Consensus 156 ~~~l~~~d~~-g~~~~~~-----~~-~~---~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~--~~~~~~~ 220 (330)
T 3hxj_A 156 DNYLYAINPD-GTEKWRF-----KT-ND---AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAG--YWTVTRP 220 (330)
T ss_dssp TSEEEEECTT-SCEEEEE-----EC-SS---CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCS--SCCCSCC
T ss_pred CCEEEEECCC-CCEeEEE-----ec-CC---CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccC--Ccceece
Confidence 8999999988 4432111 11 11 345667787888765555 8999999 677776666532 4567788
Q ss_pred EEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 505 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 505 ~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
...++|. |..++.++.|..++. +++....+... ..... .+...+ + ..|..++.+|.|..+|. +++
T Consensus 221 ~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--------~~~~~--~~~~~~-~-g~l~v~t~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 221 AISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--------KRIES--SPVIGN-T-DTIYFGSYDGHLYAINP-DGT 285 (330)
T ss_dssp EECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT-T-SCEEEECTTCEEEEECT-TSC
T ss_pred EECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--------CCccc--cceEcC-C-CeEEEecCCCCEEEECC-CCc
Confidence 8888875 555667888988874 56655554421 11112 344444 3 46777888889999996 677
Q ss_pred cccccC
Q 007306 585 VEWGKL 590 (608)
Q Consensus 585 ~~~~~~ 590 (608)
..|...
T Consensus 286 ~~~~~~ 291 (330)
T 3hxj_A 286 EKWNFE 291 (330)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 777654
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.02 E-value=1.7e-07 Score=98.93 Aligned_cols=292 Identities=11% Similarity=0.058 Sum_probs=177.6
Q ss_pred CCEEEEEeC-CCcEEEEec-CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEE
Q 007306 271 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISI 347 (608)
Q Consensus 271 g~~l~s~s~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~v 347 (608)
+..++.++. ++.+.-+|. .+++. +|....+..........-......+++.+..++.++ |+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~a 129 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLA 129 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccE------------EEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEE
Confidence 445677777 888988998 78876 776443221000000000000112344567777777 999999
Q ss_pred EEcCCCceeeEecCCC----CCeEE-EEEcCCCeEEEEeC------CCcEEEEeCCCCceEEEeeCcccc----------
Q 007306 348 FSLETFQTLATFANPP----PIATY-FILLPQDLFAFGFD------DSSILVHCPCTKKTKAKLKGHQNR---------- 406 (608)
Q Consensus 348 wd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~l~~~~~------d~~i~vwd~~~~~~~~~~~~~~~~---------- 406 (608)
+|..+|+.+....... ..+.+ ... .++.+++++. ++.|..+|..+|+.+..+......
T Consensus 130 lD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~ 208 (571)
T 2ad6_A 130 LDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFN 208 (571)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccc
Confidence 9999999988765322 01211 111 1455555554 789999999999988776532110
Q ss_pred ----------------------------EEEEEEeCCCCEEEEEcCC----------------CcEEEEECCCCceeccc
Q 007306 407 ----------------------------ITCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 407 ----------------------------v~~~~~~~~~~~l~s~~~d----------------~~i~vwd~~~~~~~~~~ 442 (608)
...+++.++...+..++.+ +.|..+|.++++.....
T Consensus 209 ~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~ 288 (571)
T 2ad6_A 209 SANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGY 288 (571)
T ss_dssp TTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEE
T ss_pred cccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEe
Confidence 0135677766677666532 35899999997654322
Q ss_pred ceeeeeccCC-----CCccceEEEEEcCCCC---EEEEE-eCCcEEEEECCCCceeeeecCCCC-----------CCCe-
Q 007306 443 FLHSFQTGLV-----PETTIVNHIQFHPDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKM-----------DLPI- 501 (608)
Q Consensus 443 ~~~~~~~~~~-----~~~~~v~~v~~sp~~~---~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~v- 501 (608)
... .|. ....++ -+...++|+ .++.+ .+|.++++|..+|+.+..+..... ..++
T Consensus 289 ~~~----~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~ 363 (571)
T 2ad6_A 289 QKT----PHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVR 363 (571)
T ss_dssp ESS----TTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEE
T ss_pred cCC----CCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceec
Confidence 211 110 000122 123335674 44444 788999999999998776543210 0111
Q ss_pred -------------------------EEEEEecCCCEEEEEEc-------------------------------------C
Q 007306 502 -------------------------TYATYSCDGKCIYVSCK-------------------------------------S 519 (608)
Q Consensus 502 -------------------------~~~~~s~~~~~l~sg~~-------------------------------------d 519 (608)
..++++|+...+++.+. +
T Consensus 364 ~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 443 (571)
T 2ad6_A 364 DPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEM 443 (571)
T ss_dssp CGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCC
T ss_pred ccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCC
Confidence 24678888887777642 4
Q ss_pred CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccCCC
Q 007306 520 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKLPF 592 (608)
Q Consensus 520 g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~ 592 (608)
|.|+.||..+++.+..+... .... ...... .+..+..++.||.|+.||..+++..|....+
T Consensus 444 g~l~a~D~~tG~~~W~~~~~---------~~~~--~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 444 GQIRAFDLTTGKAKWTKWEK---------FAAW--GGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES---------SCCC--SBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CeEEEEECCCCCEEEEecCC---------CCcc--ceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 78999999999988877532 1111 111222 3567777999999999999999999987654
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.00 E-value=1.4e-07 Score=87.92 Aligned_cols=217 Identities=12% Similarity=-0.005 Sum_probs=143.1
Q ss_pred CceeeEecCCCC--CeEEEEEcCCC-eEEEEeC--CCcEEEEeCCCCceEEEeeCcc-ccEEEEEEeCCCCEEEEEcCCC
Q 007306 353 FQTLATFANPPP--IATYFILLPQD-LFAFGFD--DSSILVHCPCTKKTKAKLKGHQ-NRITCLAYSLSLNVLVSSGADA 426 (608)
Q Consensus 353 ~~~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d~ 426 (608)
.+.+.++. |.. ....+.|++++ .+++.+. ++.|.++|+.+++.+..+.-.. .....+++.. ++..++.-.++
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~ 86 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCS
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCC
Confidence 34555553 332 35789999989 5555443 6799999999999988765322 2233455552 34455556689
Q ss_pred cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeE
Q 007306 427 QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPIT 502 (608)
Q Consensus 427 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~ 502 (608)
.+.++|..+.+. +.++..+ .+ . ...+++||+.++++ .++.|.++|..+.+.+..+....+. ..+.
T Consensus 87 ~v~viD~~t~~v-----~~~i~~g-~~--~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 87 IGFIYDRRTLSN-----IKNFTHQ-MK--D---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp EEEEEETTTTEE-----EEEEECC-SS--S---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred EEEEEECCCCcE-----EEEEECC-CC--C---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 999999998543 3333333 11 1 13356678777775 5789999999999988888754222 2467
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec----cCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEE
Q 007306 503 YATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA----QPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVI 578 (608)
Q Consensus 503 ~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW 578 (608)
.+.|. +|...+....++.|.+.|..+++.+..+...... ..++ ........++|+|+...+++++...+.|.+-
T Consensus 156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 78888 7755444445799999999999999988753110 0011 1112245999999444577777788999999
Q ss_pred eCCCCc
Q 007306 579 EPLESE 584 (608)
Q Consensus 579 ~~~~~~ 584 (608)
++...+
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 987653
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.00 E-value=8.7e-06 Score=90.13 Aligned_cols=324 Identities=8% Similarity=0.003 Sum_probs=199.1
Q ss_pred eecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeec----CCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCc
Q 007306 217 TSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLP----DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNK 292 (608)
Q Consensus 217 ~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~----~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~ 292 (608)
...++|. |..|..+ -+.+||.. ...+..+... ..-....|.++...++|. |..|+.++-|..|+..+..
T Consensus 269 ~~d~~g~-lWigt~~-Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 269 AMDSQNR-LWIGTFN-DLNIYHEG----TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp EECTTSC-EEEEESS-CEEEEETT----TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred EEcCCCC-EEEEeCC-hhheEcCC----CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence 3445555 4444444 58888876 3444443211 011346799999999998 5667777778877755443
Q ss_pred ceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecC--------C
Q 007306 293 QSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFAN--------P 362 (608)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~--------~ 362 (608)
. ..+..... ... -....|.++... ...|..|. ++-|..|+..+++....... .
T Consensus 342 ~-----------~~~~~~~~---~~~---l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 342 F-----------KNIRNIPY---KNS---LSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp S-----------EEECCCTT---SSS---CSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred c-----------eEEcCCCC---CCC---CCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 2 11111100 000 134568888888 55566677 77899999887655433211 2
Q ss_pred CCCeEEEEEcCCCe-EEEEeCCCcEEEEeCCCCceEEEee----CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCc
Q 007306 363 PPIATYFILLPQDL-FAFGFDDSSILVHCPCTKKTKAKLK----GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWK 437 (608)
Q Consensus 363 ~~~v~~~~~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 437 (608)
...|.++...+++. |.+|+.++.|..||..+++...... .....|.++...++|.+.+.. . +.+.+||..+++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence 35688998888885 9999998889999998876443221 134579999999888866544 4 568899987743
Q ss_pred eecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecC-----CCCCCCeEEEEEecCCCE
Q 007306 438 KLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP-----DKMDLPITYATYSCDGKC 512 (608)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~ 512 (608)
........ ...+.. ...|.++...++|+..+.+. +.+..||..+++. .+.. ......|.++..+++|.+
T Consensus 483 ~~~~~~~~-~~~~~~--~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~l 556 (795)
T 4a2l_A 483 FTTIEKEK-DGTPVV--SKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGII 556 (795)
T ss_dssp EEECCBCT-TCCBCC--CCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCE
T ss_pred EEEccccc-cccccC--CceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCE
Confidence 21111000 000100 14689999999998777655 6799999877655 3221 012457899999999986
Q ss_pred EEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 513 IYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 513 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.++. .+ -|..||..+++.. .+... .|-....+ .++...+ ++.+.+++ . +-|..|++.+++
T Consensus 557 WigT-~~-Gl~~~d~~~~~~~-~~~~~----~gl~~~~i--~~i~~d~-~g~lWi~t-~-~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 557 WVGT-RE-GFYCFNEKDKQIK-RYNTT----NGLPNNVV--YGILEDS-FGRLWLST-N-RGISCFNPETEK 616 (795)
T ss_dssp EEEE-SS-CEEEEETTTTEEE-EECGG----GTCSCSCE--EEEEECT-TSCEEEEE-T-TEEEEEETTTTE
T ss_pred EEEe-CC-CceeECCCCCcEE-EeCCC----CCCchhhe--EEEEECC-CCCEEEEc-C-CceEEEcCCCCc
Confidence 5544 34 5888998876543 23211 12212234 3787777 67666555 3 457778887654
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.99 E-value=8.8e-06 Score=90.08 Aligned_cols=327 Identities=8% Similarity=-0.006 Sum_probs=197.0
Q ss_pred cCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecC----CCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 219 LPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPD----NSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 219 s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~----~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.++|. +..++.++-+..||.. ...+..+.... .-....|.++...++|.+ ..|+.+ -+.+|+..+...
T Consensus 223 d~~g~-lwigt~~~Gl~~~~~~----~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~- 294 (795)
T 4a2l_A 223 QSPTR-IWVATEGAGLFLINPK----TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSF- 294 (795)
T ss_dssp EETTE-EEEEEBSSCEEEEETT----TTEEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEE-
T ss_pred cCCCC-EEEEECCCCeEEEeCC----CCeEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeE-
Confidence 34444 4445544458888876 34444432210 112467999999999985 445555 577777655432
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEec------CCCCCe
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA------NPPPIA 366 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~------~~~~~v 366 (608)
..+...... ...-....|.++... ...|..|+ ++-|..|+..++....... -....|
T Consensus 295 ----------~~~~~~~~~-----~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V 359 (795)
T 4a2l_A 295 ----------ASYSSNPVE-----NGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVV 359 (795)
T ss_dssp ----------EEECCCTTS-----TTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSE
T ss_pred ----------EEEecCCCC-----CCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCee
Confidence 111100000 000134678898888 55566777 7889999876554322111 123568
Q ss_pred EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeC--------ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCce
Q 007306 367 TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKG--------HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 367 ~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
.++...++|.|..|+.++-|..||..+++....... ....|.++...++|+.|..|+.++.|..||..+++.
T Consensus 360 ~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~ 439 (795)
T 4a2l_A 360 SCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV 439 (795)
T ss_dssp EEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred EEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence 899888888777788888899999887754432211 235789999999998566677778899999887542
Q ss_pred ecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecC----CCCCCCeEEEEEecCCCEEE
Q 007306 439 LCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVP----DKMDLPITYATYSCDGKCIY 514 (608)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~ 514 (608)
....... ..... ..|.++...++|...+.+. +.+.+||..+++....... .-....|.++...++|.+.+
T Consensus 440 ~~~~~~~--~~l~~---~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi 513 (795)
T 4a2l_A 440 ENFNQRN--SQLVN---ENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI 513 (795)
T ss_dssp EEECTTT--SCCSC---SCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred EEeecCC--CCcCC---CeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence 1111000 00111 4789999999888766655 6799999877654322111 11246799999999998665
Q ss_pred EEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 515 VSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 515 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
.. . +-|..|+..+++. .+.... ...+-.. ..+.++...+ ++.+.++. .. -|..|+..+++
T Consensus 514 gt-~-~Gl~~~~~~~~~~--~~~~~~-~~~~l~~--~~i~~i~~d~-~g~lWigT-~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 514 GG-E-EGLSVFKQEGLDI--QKASIL-PVSNVTK--LFTNCIYEAS-NGIIWVGT-RE-GFYCFNEKDKQ 573 (795)
T ss_dssp EE-S-SCEEEEEEETTEE--EECCCS-CSCGGGG--SCEEEEEECT-TSCEEEEE-SS-CEEEEETTTTE
T ss_pred Ee-C-CceEEEeCCCCeE--EEecCC-CCCCCCC--CeeEEEEECC-CCCEEEEe-CC-CceeECCCCCc
Confidence 54 4 5588899887764 222100 0001112 2345888877 66655544 34 57888887654
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.98 E-value=2.5e-07 Score=97.57 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=153.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeE-EEEEeCCEEEEEe-------
Q 007306 270 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFSAS------- 341 (608)
Q Consensus 270 ~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~l~s~~------- 341 (608)
++..++.++.|+.+..+|..+++. +|....+.... + ..+. .....+..++.++
T Consensus 114 ~~~~v~v~~~dg~l~alD~~tG~~------------~W~~~~~~~~~-----~--~~~~~~P~v~~g~v~vg~~~~~~~~ 174 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDAKTGKI------------NWEVEVCDPKV-----G--STLTQAPFVAKDTVLMGCSGAELGV 174 (571)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------------EEEEECCCGGG-----T--CBCCSCCEEETTEEEEECBCGGGTC
T ss_pred ECCEEEEEeCCCEEEEEECCCCCE------------EEEecCCCCCc-----c--ceeccCCEEECCEEEEEecCCccCC
Confidence 356788888899999999988886 67643221000 0 0111 1112344555544
Q ss_pred CCcEEEEEcCCCceeeEecCCCCC-------------------------------------e-EEEEEcCCC-eEEEEeC
Q 007306 342 GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQD-LFAFGFD 382 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~-~l~~~~~ 382 (608)
++.|..+|..+|+.+..+...... + ..+++.++. .++.+..
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g 254 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSG 254 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECC
Confidence 479999999999998877632211 0 135566765 5555543
Q ss_pred C----------------CcEEEEeCCCCceEEEeeCc--c--------ccEEEEEEeCCCC---EEEEEcCCCcEEEEEC
Q 007306 383 D----------------SSILVHCPCTKKTKAKLKGH--Q--------NRITCLAYSLSLN---VLVSSGADAQLCVWDA 433 (608)
Q Consensus 383 d----------------~~i~vwd~~~~~~~~~~~~~--~--------~~v~~~~~~~~~~---~l~s~~~d~~i~vwd~ 433 (608)
+ +.|..+|..+|+.+..++.. . .++. +...++|+ .++.++.+|.+.++|.
T Consensus 255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~ 333 (571)
T 2ad6_A 255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEEC
Confidence 2 36999999999998777532 1 1221 22234674 5778889999999999
Q ss_pred CCCceecccceee-e--e---ccCCCCccce--------------------------EEEEEcCCCCEEEEE-e------
Q 007306 434 VGWKKLCSKFLHS-F--Q---TGLVPETTIV--------------------------NHIQFHPDQIHLLSI-H------ 474 (608)
Q Consensus 434 ~~~~~~~~~~~~~-~--~---~~~~~~~~~v--------------------------~~v~~sp~~~~l~~~-~------ 474 (608)
.+++......+.. . . ..... .++ ..++++|+...+++. .
T Consensus 334 ~tG~~~w~~~~~~~~~w~~~~d~~~g--~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~ 411 (571)
T 2ad6_A 334 ENGNLIVAEKVDPAVNVFKKVDLKTG--TPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDW 411 (571)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTC--SEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred CCCCEEeeecccCCccccccccccCC--ceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccc
Confidence 9977543322110 0 0 00000 000 246788887777763 2
Q ss_pred -------------------------------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEE
Q 007306 475 -------------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVK 523 (608)
Q Consensus 475 -------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~ 523 (608)
++.|..||..+++.+.++... ..+....+...+..++.++.||.|+
T Consensus 412 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 412 EPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEE
T ss_pred cccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEE
Confidence 367999999999988777542 2233333444567888899999999
Q ss_pred EEeCCCCceeEEEec
Q 007306 524 VFDTSTLELRCQINL 538 (608)
Q Consensus 524 iwd~~~~~~~~~~~~ 538 (608)
.||..+|+.+..+..
T Consensus 489 a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 489 ALDNKDGKELWNFKM 503 (571)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEeC
Confidence 999999999988864
No 244
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.96 E-value=2e-07 Score=98.24 Aligned_cols=251 Identities=14% Similarity=0.158 Sum_probs=154.5
Q ss_pred EEEeeCCCE----EEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeE-EEEEeCCEEEE
Q 007306 265 LIYSHSGDF----LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSIS-CFALRGSHLFS 339 (608)
Q Consensus 265 ~~fsp~g~~----l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~l~s 339 (608)
++++|.+.. ++.++.|+.+..+|..+++. +|....+... ....+. ...+.+..++.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~------------~W~~~~~~~~-------~~~~~~ssP~v~~g~V~v 171 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGET------------VWKVENSDIK-------VGSTLTIAPYVVKDKVII 171 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCE------------EEEEECCCGG-------GTCBCCSCCEEETTEEEE
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCE------------EEeecCCCCC-------ccceeecCCEEECCEEEE
Confidence 456554444 88888999999999988886 6764322110 000111 11123444544
Q ss_pred Ee-------CCcEEEEEcCCCceeeEecCCCCC-------------------------------------e-EEEEEcCC
Q 007306 340 AS-------GGKISIFSLETFQTLATFANPPPI-------------------------------------A-TYFILLPQ 374 (608)
Q Consensus 340 ~~-------d~~i~vwd~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~ 374 (608)
++ ++.|+.+|..+|+.+..+...... + ..+++.++
T Consensus 172 g~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~ 251 (599)
T 1w6s_A 172 GSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPG 251 (599)
T ss_dssp CCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETT
T ss_pred EecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCC
Confidence 43 589999999999998877633211 0 13456666
Q ss_pred C-eEEEEeCC----------------CcEEEEeCCCCceEEEeeCccc----------cEEEEEEe-CCC---CEEEEEc
Q 007306 375 D-LFAFGFDD----------------SSILVHCPCTKKTKAKLKGHQN----------RITCLAYS-LSL---NVLVSSG 423 (608)
Q Consensus 375 ~-~l~~~~~d----------------~~i~vwd~~~~~~~~~~~~~~~----------~v~~~~~~-~~~---~~l~s~~ 423 (608)
. .++.+..+ +.|..+|..+|+.+..++.... ++. +... .+| ..++.++
T Consensus 252 ~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 252 TNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp TTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC
T ss_pred CCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC
Confidence 6 66666654 4899999999999877765221 121 2222 567 4677789
Q ss_pred CCCcEEEEECCCCceecccceee-------e--ecc-------------CC-----CC---ccceEEEEEcCCCCEEEEE
Q 007306 424 ADAQLCVWDAVGWKKLCSKFLHS-------F--QTG-------------LV-----PE---TTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 424 ~d~~i~vwd~~~~~~~~~~~~~~-------~--~~~-------------~~-----~~---~~~v~~v~~sp~~~~l~~~ 473 (608)
.+|.+.++|..+++......+.. + ..+ .. |. ...-..++++|+...+++.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 99999999999987653322110 0 000 00 00 0001245677766655541
Q ss_pred ----------------------------------------eCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEE
Q 007306 474 ----------------------------------------HEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCI 513 (608)
Q Consensus 474 ----------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 513 (608)
..+.|..||+.+++.+-+.... .+...-.+...+..+
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~v 487 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLV 487 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcceEecCCEE
Confidence 2357888999999887766432 222222234467788
Q ss_pred EEEEcCCeEEEEeCCCCceeEEEec
Q 007306 514 YVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 514 ~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
+.++.||.++.||.++|+.+..+..
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCeEEEEECCCCCEEEEeeC
Confidence 8899999999999999999988864
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.93 E-value=2.5e-06 Score=80.73 Aligned_cols=198 Identities=11% Similarity=-0.021 Sum_probs=128.2
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEE
Q 007306 326 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAK 399 (608)
Q Consensus 326 ~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~ 399 (608)
....++|+ ++.|+.+. ++.|..+++..+.....+.........+++++++ .+++....+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 45688888 56666666 6899999997655443333333567899999975 455555677999999875433222
Q ss_pred eeCccccEEEEEEeCCCCEEEEEcC---CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e
Q 007306 400 LKGHQNRITCLAYSLSLNVLVSSGA---DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 474 (608)
Q Consensus 400 ~~~~~~~v~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~ 474 (608)
..........++++|++..|..+.. .+.|..+++.... ...+..... .....++++|++..|+.+ .
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~------~~~~~~~~~---~~P~gia~d~~~~~lyv~d~~ 187 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN------RRILAQDNL---GLPNGLTFDAFSSQLCWVDAG 187 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC------CEEEECTTC---SCEEEEEEETTTTEEEEEETT
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC------cEEEEECCC---CCCcEEEEcCCCCEEEEEECC
Confidence 2222246789999996655554443 3688888876521 111111111 356789999998877764 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEe
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+.|.++|.........+.. ......++.. +..|+.+. .++.|.++|..+++.+..+.
T Consensus 188 ~~~I~~~~~~g~~~~~~~~~---~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 188 THRAECLNPAQPGRRKVLEG---LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp TTEEEEEETTEEEEEEEEEC---CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEecCCCceEEEecC---CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 67899999965443322221 2344566654 45555554 56899999999999887775
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.92 E-value=2.2e-07 Score=92.04 Aligned_cols=202 Identities=10% Similarity=0.065 Sum_probs=131.0
Q ss_pred CCC--eEEEEeCCCcEEEEeCCCC----ceEEEee-------CccccEEEEEEeCCCCEEEEEcCC------CcEEEEEC
Q 007306 373 PQD--LFAFGFDDSSILVHCPCTK----KTKAKLK-------GHQNRITCLAYSLSLNVLVSSGAD------AQLCVWDA 433 (608)
Q Consensus 373 ~~~--~l~~~~~d~~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~ 433 (608)
+++ .++.|..++.|.++|+.+. +..+.++ ........+...|+| .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 777 6667778889999998765 5556553 011245667889999 77766555 78999999
Q ss_pred CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe--------------------CCcEEEEECCCCceeeeec
Q 007306 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH--------------------EGQIDVYEAPTLNHTSQLV 493 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~ 493 (608)
.+.+.... +..+..+ ..--..+.|+|+++.++++. +++|.+||+.+++.+.++.
T Consensus 172 ~T~~v~~~-----~~~~~~~-~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 172 YSFEPLGK-----WEIDRGD-QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp TTCCEEEE-----CCSBCTT-CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEE-----EccCCCC-ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 98554332 2222110 01234688899999988864 6889999999998888887
Q ss_pred CCCCCCCeEEEEE--ecCCCEEEEEEc------CCeEEEEeCCCCceeEEEe--ceeeccCCC--------cccccccEE
Q 007306 494 PDKMDLPITYATY--SCDGKCIYVSCK------SGHVKVFDTSTLELRCQIN--LTAYAQPGT--------ISLELYPLV 555 (608)
Q Consensus 494 ~~~~~~~v~~~~~--s~~~~~l~sg~~------dg~i~iwd~~~~~~~~~~~--~~~~~~~g~--------~~~~v~~~~ 555 (608)
.+........+.| +|++++++++++ +++|.+|....++...... .......+. ....-.+..
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 6422234455656 999999998875 5688888776654222111 110000000 000112448
Q ss_pred EEEecCCCCEEEEEe-CCCcEEEEeCCC
Q 007306 556 IAAHPLEPNRIALGL-TNGRVHVIEPLE 582 (608)
Q Consensus 556 v~~sp~d~~~las~s-~Dg~v~iW~~~~ 582 (608)
+.+|| |+++|.++. ..+.|.++|+..
T Consensus 326 I~lS~-DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 326 IDISL-DDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EEECT-TSCEEEEEETTTTEEEEEECSS
T ss_pred EEECC-CCCEEEEEeCCCCEEEEEEecC
Confidence 99999 677776665 568999999864
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.92 E-value=2.7e-06 Score=80.55 Aligned_cols=228 Identities=13% Similarity=0.034 Sum_probs=141.6
Q ss_pred CEEEEEeCCcEEEEEcCCCcee-----eEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccE
Q 007306 335 SHLFSASGGKISIFSLETFQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI 407 (608)
Q Consensus 335 ~~l~s~~d~~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 407 (608)
.+|+.+..+.|+.+++...... ..+......+..++|++++ .+++...++.|..+++.++.............
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4556666567888888754321 1122222356789999976 55555567899999998665443333333568
Q ss_pred EEEEEeCCCCE-EEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e--CCcEEEEE
Q 007306 408 TCLAYSLSLNV-LVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H--EGQIDVYE 482 (608)
Q Consensus 408 ~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~--d~~i~iwd 482 (608)
..++++|++.. +++-...+.|.++++..... ..+..... .....++++|++..|+.+ . .+.|..++
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------~~~~~~~~---~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~ 152 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR------RVLFDTGL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH 152 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEECSSC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE------EEEEECCC---CCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence 89999997554 45555678999999875221 11111111 246799999976666553 2 36888888
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecC
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPL 561 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~ 561 (608)
+. +.....+... .......+++++++..|+.+. ..+.|.+++.........+.. + . .+..++..
T Consensus 153 ~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~------~--~---~P~gi~~d-- 217 (267)
T 1npe_A 153 MD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG------L--Q---YPFAVTSY-- 217 (267)
T ss_dssp TT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC------C--C---SEEEEEEE--
T ss_pred cC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC------C--C---CceEEEEe--
Confidence 85 4333333221 245688999999887776655 458999999986543333221 1 1 12355543
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCccc
Q 007306 562 EPNRIALGLTNGRVHVIEPLESEVE 586 (608)
Q Consensus 562 d~~~las~s~Dg~v~iW~~~~~~~~ 586 (608)
++.++++....+.|.+++..+++..
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEECCCCeEEEEeCCCCCce
Confidence 3455555556789999999887653
No 248
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.90 E-value=7.3e-07 Score=93.99 Aligned_cols=292 Identities=12% Similarity=0.045 Sum_probs=175.5
Q ss_pred CCEEEEEeC-CCcEEEEec-CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE--eCCE----EEEEe-
Q 007306 271 GDFLVALTQ-TATHKLWKW-QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL--RGSH----LFSAS- 341 (608)
Q Consensus 271 g~~l~s~s~-dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~~~----l~s~~- 341 (608)
+..++.++. ++.+.-+|. .+++. +|....+.................+++ .+.. ++.++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------------lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~ 129 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTI------------LWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL 129 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------------EEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcE------------EEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence 455777777 888888998 78876 776543321100000000001122445 4333 67777
Q ss_pred CCcEEEEEcCCCceeeEecCCC----CCeEE-EEEcCCCeEEEEe------CCCcEEEEeCCCCceEEEeeCcccc----
Q 007306 342 GGKISIFSLETFQTLATFANPP----PIATY-FILLPQDLFAFGF------DDSSILVHCPCTKKTKAKLKGHQNR---- 406 (608)
Q Consensus 342 d~~i~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~---- 406 (608)
|+.+.-+|..+|+.+....... ..+.+ ..+ .++.+++++ .++.|+.+|..+|+.+..+......
T Consensus 130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~ 208 (599)
T 1w6s_A 130 DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL 208 (599)
T ss_dssp TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred CCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 9999999999999988765322 01211 111 245455554 3789999999999988776532111
Q ss_pred ---------------------------------E-EEEEEeCCCCEEEEEcCC----------------CcEEEEECCCC
Q 007306 407 ---------------------------------I-TCLAYSLSLNVLVSSGAD----------------AQLCVWDAVGW 436 (608)
Q Consensus 407 ---------------------------------v-~~~~~~~~~~~l~s~~~d----------------~~i~vwd~~~~ 436 (608)
+ ..+++.++...+..+..+ +.|..+|.+++
T Consensus 209 ~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG 288 (599)
T 1w6s_A 209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG 288 (599)
T ss_dssp BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred cccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC
Confidence 0 134667777777777665 37999999997
Q ss_pred ceecccceeeeeccCC-----CCccceEEEEEc-CCC---CEEEE-EeCCcEEEEECCCCceeeeecCCC----------
Q 007306 437 KKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQ---IHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------- 496 (608)
Q Consensus 437 ~~~~~~~~~~~~~~~~-----~~~~~v~~v~~s-p~~---~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------- 496 (608)
+..-..... .|. ....++. +... .+| +.++. +.+|.++++|.++|+.+.......
T Consensus 289 ~~~W~~q~~----~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 289 EAKFGYQKT----PHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp CEEEEEESS----TTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred ceeeEeecC----CCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 654322111 110 0001221 2222 567 34554 488999999999999876654221
Q ss_pred -CCCCe--------------------------EEEEEecCCCEEEEEE--------------------------------
Q 007306 497 -MDLPI--------------------------TYATYSCDGKCIYVSC-------------------------------- 517 (608)
Q Consensus 497 -~~~~v--------------------------~~~~~s~~~~~l~sg~-------------------------------- 517 (608)
...++ ..++++|+..++++..
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 01111 2456777776665532
Q ss_pred -------cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007306 518 -------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 518 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~ 590 (608)
.+|.|..||+.+|+.+...... ...+...++ . .+.++..++.||.|+.||..+|+..|...
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---------~~~~~g~~~--t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMER---------FAVWGGTMA--T-AGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEES---------SCCCSBCEE--E-TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCC---------CCccCcceE--e-cCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 3478999999999988776431 001100121 1 35677789999999999999999999886
Q ss_pred CC
Q 007306 591 PF 592 (608)
Q Consensus 591 ~~ 592 (608)
.+
T Consensus 512 l~ 513 (599)
T 1w6s_A 512 IP 513 (599)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.90 E-value=1.3e-07 Score=86.81 Aligned_cols=200 Identities=13% Similarity=0.033 Sum_probs=126.1
Q ss_pred ceeeEecCCCCC--eEEEEEcCCC-eEEEEeCCC--cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEE-EEcCCCc
Q 007306 354 QTLATFANPPPI--ATYFILLPQD-LFAFGFDDS--SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLV-SSGADAQ 427 (608)
Q Consensus 354 ~~~~~~~~~~~~--v~~~~~~~~~-~l~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~d~~ 427 (608)
+.+.++ .|... ...+.|+ ++ ++.+.+.+| .|+++|+.+++.+..+.... ........+++..|. ..-.++.
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 344555 34433 3678888 67 666777665 89999999999988876432 333322333344444 4456899
Q ss_pred EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeEE
Q 007306 428 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY 503 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~ 503 (608)
+.+||..+.+.... +..+.. ...++++++.|+.+ .++.|.++|..+.+.+.++...... ..+..
T Consensus 109 v~v~D~~t~~~~~t-----i~~~~e-------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE 176 (262)
T 3nol_A 109 GFVWNIRNLRQVRS-----FNYDGE-------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE 176 (262)
T ss_dssp EEEEETTTCCEEEE-----EECSSC-------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred EEEEECccCcEEEE-----EECCCC-------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence 99999998554332 222211 12334567777774 4678999999999988887764222 33455
Q ss_pred EEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCC--CcccccccEEEEEecCCCCEEEEE
Q 007306 504 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPG--TISLELYPLVIAAHPLEPNRIALG 569 (608)
Q Consensus 504 ~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g--~~~~~v~~~~v~~sp~d~~~las~ 569 (608)
+.|. +|+..+....++.|.+.|..+|+.+..+......+.. .....-..+.+||+|+...+++||
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 7776 7765555546889999999999999998754222110 001111235999999444455555
No 250
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.88 E-value=1.6e-06 Score=91.63 Aligned_cols=292 Identities=12% Similarity=0.052 Sum_probs=171.7
Q ss_pred CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe-CCcEEEEE
Q 007306 271 GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS-GGKISIFS 349 (608)
Q Consensus 271 g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~-d~~i~vwd 349 (608)
+..++.++.++.+.-+|..+++. +|............ ........+++.+..++.++ |+.|.-+|
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~------------~W~~~~~~~~~~~~--~~~~~~~g~a~~~~~v~~~t~dg~l~AlD 133 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKR------------LWTYNHRLPDDIRP--CCDVVNRGAAIYGDKVFFGTLDASVVALN 133 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCE------------EEEEECCCCTTCCC--SSCSCCCCCEEETTEEEEEETTTEEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcE------------EEEEcCCCCccccc--ccccCCCccEEECCEEEEEeCCCEEEEEE
Confidence 33466666644488888888876 67643221100000 00000012334566777777 99999999
Q ss_pred cCCCceeeEecCCCC----CeE-EEEEcCC---C--eEEEEe------CCCcEEEEeCCCCceEEEeeCccccE------
Q 007306 350 LETFQTLATFANPPP----IAT-YFILLPQ---D--LFAFGF------DDSSILVHCPCTKKTKAKLKGHQNRI------ 407 (608)
Q Consensus 350 ~~~~~~~~~~~~~~~----~v~-~~~~~~~---~--~l~~~~------~d~~i~vwd~~~~~~~~~~~~~~~~v------ 407 (608)
..+|+.+........ .+. ...+..+ + .+++++ .++.|+.+|..+|+.+.........+
T Consensus 134 ~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~ 213 (582)
T 1flg_A 134 KNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGK 213 (582)
T ss_dssp SSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTE
T ss_pred CCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCc
Confidence 999999887763321 111 1111222 3 555654 37899999999999886554211000
Q ss_pred -----------------------------------EEEEEeCCCCEEEEEcC--------------------C----CcE
Q 007306 408 -----------------------------------TCLAYSLSLNVLVSSGA--------------------D----AQL 428 (608)
Q Consensus 408 -----------------------------------~~~~~~~~~~~l~s~~~--------------------d----~~i 428 (608)
..++++|+...+..+.. | +.|
T Consensus 214 ~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v 293 (582)
T 1flg_A 214 DSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQ 293 (582)
T ss_dssp EEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEE
T ss_pred ccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceE
Confidence 13466777677766653 2 579
Q ss_pred EEEECCCCceecccceeeeeccCC-----CCccceEEEEEc-CCCC---EEEEE-eCCcEEEEECCCCceeeeecCCCCC
Q 007306 429 CVWDAVGWKKLCSKFLHSFQTGLV-----PETTIVNHIQFH-PDQI---HLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD 498 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~s-p~~~---~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 498 (608)
..+|..+++..-..... .|. ....++. +... .+|+ .++.+ .+|.++++|.++|+.+..+......
T Consensus 294 ~AlD~~TG~~~W~~q~~----~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 294 VGVDPSSGEVKWFYQHT----PNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI 368 (582)
T ss_dssp EEECTTTCCEEEEEESS----TTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred EEEeCCCCCEEEEEeCC----CCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence 99999997754322111 110 0001221 2222 4674 45554 8899999999999987665432100
Q ss_pred -----------CC--------------------------------eEEEEEecCCCEEEEEE------------------
Q 007306 499 -----------LP--------------------------------ITYATYSCDGKCIYVSC------------------ 517 (608)
Q Consensus 499 -----------~~--------------------------------v~~~~~s~~~~~l~sg~------------------ 517 (608)
.+ -..++++|+...+++..
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 00 01346677665555433
Q ss_pred ---------------cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 518 ---------------KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 518 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
.+|.|+.||+.+|+.+....... ..+...++ . .+.+++.++.||.++.||..+
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~---------~~~~g~~~--t-agglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL---------PLWAGVLA--T-AGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS---------CCCSCCEE--E-TTTEEEEECTTSEEEEEETTT
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC---------CCcccceE--e-CCCEEEEECCCCcEEEEECCC
Confidence 25889999999999887765321 11110122 1 356788899999999999999
Q ss_pred CccccccCCCC
Q 007306 583 SEVEWGKLPFT 593 (608)
Q Consensus 583 ~~~~~~~~~~~ 593 (608)
++..|....+.
T Consensus 517 G~~lW~~~~~~ 527 (582)
T 1flg_A 517 GKELWKFQTGS 527 (582)
T ss_dssp CCEEEEEECSS
T ss_pred CCEEEEecCCC
Confidence 99999886653
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.86 E-value=1.6e-06 Score=91.53 Aligned_cols=270 Identities=11% Similarity=0.057 Sum_probs=159.6
Q ss_pred CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeC----C-EEEEEe---
Q 007306 270 SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRG----S-HLFSAS--- 341 (608)
Q Consensus 270 ~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~----~-~l~s~~--- 341 (608)
.+..++.++.|+.+..+|..+++. +|....+...... .....++ ...+ + .+++++
T Consensus 116 ~~~~v~~~t~dg~l~AlD~~TG~~------------~W~~~~~~~~~~~--~~~~sP~---v~~~~~~G~~~v~vg~~~~ 178 (582)
T 1flg_A 116 YGDKVFFGTLDASVVALNKNTGKV------------VWKKKFADHGAGY--TMTGAPT---IVKDGKTGKVLLIHGSSGD 178 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCE------------EEEEECSCGGGTC--BCCSCCE---EEECTTTCCEEEEECCBCG
T ss_pred ECCEEEEEeCCCEEEEEECCCCCE------------EeeecCCCCCcCc--ccccCCE---EeCCCcCCcEEEEEecccc
Confidence 355688888999999999988886 6664322100000 0011111 1112 1 455543
Q ss_pred ----CCcEEEEEcCCCceeeEecCCCCCe-----------------------------------------EEEEEcCCC-
Q 007306 342 ----GGKISIFSLETFQTLATFANPPPIA-----------------------------------------TYFILLPQD- 375 (608)
Q Consensus 342 ----d~~i~vwd~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~~~~~- 375 (608)
++.|.-+|..+|+.+.........+ ..+++.|+.
T Consensus 179 e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g 258 (582)
T 1flg_A 179 EFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETN 258 (582)
T ss_dssp GGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTT
T ss_pred ccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCC
Confidence 5789999999999887654321000 134566666
Q ss_pred eEEEEeC--------------------C----CcEEEEeCCCCceEEEeeC--cc--------ccEEEEEEe-CCCC---
Q 007306 376 LFAFGFD--------------------D----SSILVHCPCTKKTKAKLKG--HQ--------NRITCLAYS-LSLN--- 417 (608)
Q Consensus 376 ~l~~~~~--------------------d----~~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~--- 417 (608)
.++.+.. | +.|..+|..+|+.+..++. |. .++. +... .+|+
T Consensus 259 ~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~ 337 (582)
T 1flg_A 259 TIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVK 337 (582)
T ss_dssp EEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEE
T ss_pred EEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEE
Confidence 5555542 2 5899999999999987753 21 1121 1222 4674
Q ss_pred EEEEEcCCCcEEEEECCCCceecccceee-e--ec------c-------CCC--------Cc-c-----------ceEEE
Q 007306 418 VLVSSGADAQLCVWDAVGWKKLCSKFLHS-F--QT------G-------LVP--------ET-T-----------IVNHI 461 (608)
Q Consensus 418 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~--~~------~-------~~~--------~~-~-----------~v~~v 461 (608)
.++.++.+|.++++|..+++......+.. . .. + ..+ .. . .-..+
T Consensus 338 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~ 417 (582)
T 1flg_A 338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPM 417 (582)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCC
T ss_pred EEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCc
Confidence 68889999999999999987543322210 0 00 0 000 00 0 00135
Q ss_pred EEcCCCCEEEE-Ee---------------------------------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEe
Q 007306 462 QFHPDQIHLLS-IH---------------------------------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYS 507 (608)
Q Consensus 462 ~~sp~~~~l~~-~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 507 (608)
+++|+...+++ .. ++.|..||+.+++.+-+.... .++..-...
T Consensus 418 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~~ 494 (582)
T 1flg_A 418 AYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH---LPLWAGVLA 494 (582)
T ss_dssp EECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES---SCCCSCCEE
T ss_pred eECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC---CCCcccceE
Confidence 67776555554 21 467999999999987666532 222222233
Q ss_pred cCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC-EEEEEe
Q 007306 508 CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN-RIALGL 570 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~-~las~s 570 (608)
..+..++.|+.||.++.||.++|+.+..+... ..+...-+.|.. ++. |+++.+
T Consensus 495 tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~---------~g~~a~P~~y~~-~G~qYv~~~~ 548 (582)
T 1flg_A 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG---------SGIVSPPITWEQ-DGEQYLGVTV 548 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECS---------SCCCSCCEEEEE-TTEEEEEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCCEEEEecCC---------CCcccCceEEEE-CCEEEEEEEc
Confidence 45778888999999999999999999988642 112222356666 554 555443
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=3.8e-05 Score=84.77 Aligned_cols=327 Identities=11% Similarity=0.014 Sum_probs=192.6
Q ss_pred CCCCeEEEeecCCeEEEeeccCCCCCCceeeEee-----------cCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEec
Q 007306 220 PDADSAVCAKSLEKSVNLKLQLINEPSECRTLLL-----------PDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKW 288 (608)
Q Consensus 220 ~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l-----------~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~ 288 (608)
++| .|..|...+-+.++|... ..+..+.. +.......|.++...++|. |-.|+.++-|..++.
T Consensus 267 ~~g-~lWigt~~~Gl~~~~~~~----~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~ 340 (781)
T 3v9f_A 267 KDN-KLWIATELNGIMILDLQQ----NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISN 340 (781)
T ss_dssp TTS-EEEEEESSSCEEEEETTC----C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECS
T ss_pred CCC-CEEEEeCCCCeEEECCCC----CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCC
Confidence 444 455566645678888763 22222111 0011356899999999998 566777777877776
Q ss_pred CCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEe---cCCC
Q 007306 289 QSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF---ANPP 363 (608)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~---~~~~ 363 (608)
.+... ..+......... ..-....|.++... ...|..|+ ++-|..||..++...... ....
T Consensus 341 ~~~~~-----------~~~~~~~~~~~~---~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 406 (781)
T 3v9f_A 341 APPTF-----------HTWSYSPTQMNE---SSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLS 406 (781)
T ss_dssp SCCSC-----------EEEC----CCCS---SCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCC
T ss_pred CCCcc-----------eeeccCcccccc---CCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCC
Confidence 55432 111110000000 00133568888887 55566677 777999998765432211 1234
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEee--CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecc
Q 007306 364 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK--GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS 441 (608)
Q Consensus 364 ~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 441 (608)
..|.++...+++.|..|+.++.+..+|..+++...... .....|.++...++|.+.+ |+. +.+..||..+++...
T Consensus 407 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~- 483 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH- 483 (781)
T ss_dssp SBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE-
T ss_pred cceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe-
Confidence 57888888877766667877889999988775433221 1346799998888887555 444 568899987743211
Q ss_pred cceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcC
Q 007306 442 KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKS 519 (608)
Q Consensus 442 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~sg~~d 519 (608)
.. ...........|.++...++|...+.+.++.+..||..+++. ..+... -....|.++...++|.+.++. .+
T Consensus 484 --~~-~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~ 558 (781)
T 3v9f_A 484 --HY-DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GE 558 (781)
T ss_dssp --EE-CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TT
T ss_pred --cc-cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CC
Confidence 11 000000001478999999999877776656688899876543 333221 124678999998988865544 46
Q ss_pred CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 520 GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 520 g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
|.|..||..+++.. .+... .|-....++ ++...+ ++.+.++ +.+| |..+++.+.+
T Consensus 559 Glv~~~d~~~~~~~-~~~~~----~gl~~~~i~--~i~~d~-~g~lW~~-t~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 559 GLVCFPSARNFDYQ-VFQRK----EGLPNTHIR--AISEDK-NGNIWAS-TNTG-ISCYITSKKC 613 (781)
T ss_dssp EEEEESCTTTCCCE-EECGG----GTCSCCCCC--EEEECS-SSCEEEE-CSSC-EEEEETTTTE
T ss_pred CceEEECCCCCcEE-Ecccc----CCCCCceEE--EEEECC-CCCEEEE-cCCc-eEEEECCCCc
Confidence 66589998877633 33221 121123344 787777 5665554 4455 6677776544
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.85 E-value=1.4e-06 Score=81.15 Aligned_cols=199 Identities=12% Similarity=0.032 Sum_probs=130.6
Q ss_pred cEEEEEEeeCCCEEEEEeC--CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEE
Q 007306 261 RVVRLIYSHSGDFLVALTQ--TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLF 338 (608)
Q Consensus 261 ~V~~~~fsp~g~~l~s~s~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~ 338 (608)
....++|+|+|...++.+. ++.|.+.|..+++. ....... .......+++.++.|+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v---------------------~~~i~l~-~~~fgeGi~~~g~~ly 79 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV---------------------ENIHKMD-DSYFGEGLTLLNEKLY 79 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE---------------------EEEEECC-TTCCEEEEEEETTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE---------------------EEEEecC-CCcceEEEEEeCCEEE
Confidence 4678999999754444443 57888777666554 2222111 1122235666666777
Q ss_pred EEe--CCcEEEEEcCCCceeeEecCC-CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCcc-----ccEEE
Q 007306 339 SAS--GGKISIFSLETFQTLATFANP-PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQ-----NRITC 409 (608)
Q Consensus 339 s~~--d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-----~~v~~ 409 (608)
.+. ++.+.++|..+++.+.++... ... ..+++|| .++++..++.|.++|..+.+.+..+.-.. ..++.
T Consensus 80 v~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 80 QVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp EEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 666 799999999999999988643 222 3355678 66666678899999999988887765321 24678
Q ss_pred EEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeec----cCCCCccceEEEEEcCCCCEEEE-E-eCCcEEEEEC
Q 007306 410 LAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQFHPDQIHLLS-I-HEGQIDVYEA 483 (608)
Q Consensus 410 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~sp~~~~l~~-~-~d~~i~iwd~ 483 (608)
+.|. +|...+....++.|.+.|..+++......+..... ...+.....+.|+|+|+++.+++ + ..+.+...++
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 8888 77666666678999999999976544332220100 00000124689999999987777 5 5677888777
Q ss_pred CC
Q 007306 484 PT 485 (608)
Q Consensus 484 ~~ 485 (608)
..
T Consensus 236 ~~ 237 (266)
T 2iwa_A 236 HL 237 (266)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.81 E-value=3.6e-05 Score=84.99 Aligned_cols=316 Identities=11% Similarity=0.011 Sum_probs=188.2
Q ss_pred eEEEeecCCeEEEeeccCCCCCCceeeEeec------CCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeee
Q 007306 224 SAVCAKSLEKSVNLKLQLINEPSECRTLLLP------DNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEE 297 (608)
Q Consensus 224 ~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~------~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~ 297 (608)
.|..|..++-|..++... ..+..+... .......|.++...++|. |..|+.++-+..|+..+...
T Consensus 325 ~lWigt~~~Gl~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~---- 395 (781)
T 3v9f_A 325 NIWIGTWGGGINFISNAP----PTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA---- 395 (781)
T ss_dssp CEEEEEBSSCEEEECSSC----CSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE----
T ss_pred CEEEEecCCeEEEeCCCC----CcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE----
Confidence 467777777788888763 344433211 111346799999998887 56667666677776543321
Q ss_pred cccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEec--CCCCCeEEEEEcC
Q 007306 298 ENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFA--NPPPIATYFILLP 373 (608)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~ 373 (608)
..+... . ......|.++... ...|..|. ++-+..+|..+++...... .....|.++...+
T Consensus 396 -------~~~~~~-~--------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 396 -------IYNKEN-R--------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp -------ECC--------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred -------EEccCC-C--------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 001000 0 0244678888887 55566677 6789999988765433221 2346788988888
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceEEEeeCc-----cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 374 QDLFAFGFDDSSILVHCPCTKKTKAKLKGH-----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 374 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
++.|..|+. +.|..+|..+++........ ...|.++...++|.+.+ |+.++-+..||..+.+... +.
T Consensus 460 ~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~------~~ 531 (781)
T 3v9f_A 460 NKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK------FN 531 (781)
T ss_dssp TSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE------EC
T ss_pred CCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE------cc
Confidence 885555665 56899998877554332222 36789999999888655 4554557888887643211 11
Q ss_pred ccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 449 TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 449 ~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
.........|.++...++|...+++.+|-+..||..+++. ..+... -....|.++...++|.+.+++ .+| |..++
T Consensus 532 ~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~ 608 (781)
T 3v9f_A 532 QYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDY-QVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYI 608 (781)
T ss_dssp TTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCC-EEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEE
T ss_pred CCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcE-EEccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEE
Confidence 1111111578999999999877665544448899876653 333221 113567888888888765554 455 77888
Q ss_pred CCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 527 TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
..+++. ..+... .|-........++...+ ++.+ ..|+.+| +..+++..-
T Consensus 609 ~~~~~~-~~~~~~----dGl~~~~f~~~~~~~~~-~G~l-~~g~~~G-l~~f~p~~~ 657 (781)
T 3v9f_A 609 TSKKCF-YTYDHS----NNIPQGSFISGCVTKDH-NGLI-YFGSING-LCFFNPDIA 657 (781)
T ss_dssp TTTTEE-EEECGG----GTCCSSCEEEEEEEECT-TSCE-EEEETTE-EEEECSCCG
T ss_pred CCCCce-EEeccc----CCccccccccCceEECC-CCEE-EEECCCc-eEEEChhhc
Confidence 876653 333211 12112222223566666 5654 4456677 566677643
No 255
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.79 E-value=7.9e-07 Score=81.61 Aligned_cols=198 Identities=12% Similarity=-0.009 Sum_probs=128.3
Q ss_pred ceeeEecCCCC--CeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCccccE--EEEEEeCCCCEEEEEcCCCcE
Q 007306 354 QTLATFANPPP--IATYFILLPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRI--TCLAYSLSLNVLVSSGADAQL 428 (608)
Q Consensus 354 ~~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~~i 428 (608)
+.+.++ .|.. ....+.|+ ++ ++.+.+.+|.|+++|+.+++.+..+ -. ... -.+++.. ++..+..-.++.+
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEE
Confidence 344555 3433 33677887 35 7778888889999999999988776 22 223 2344443 3455555678999
Q ss_pred EEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeEEE
Q 007306 429 CVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITYA 504 (608)
Q Consensus 429 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~~ 504 (608)
.+||..+.+.... +..... + ..+ .++++.|+.+ .++.|.++|..+.+.+.++....+. ..+..+
T Consensus 119 ~V~D~~Tl~~~~t-----i~~~~e---G--wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL 186 (268)
T 3nok_A 119 FTWSGMPPQRERT-----TRYSGE---G--WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL 186 (268)
T ss_dssp EEEETTTTEEEEE-----EECSSC---C--CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred EEEECCcCcEEEE-----EeCCCc---e--eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc
Confidence 9999999554332 222211 1 233 3567888875 5789999999999988888764332 245667
Q ss_pred EEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccC----CCcccccccEEEEEecCCCCEEEEEe
Q 007306 505 TYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP----GTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 505 ~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.|. +|+..+....++.|.+.|..+|+.+..+......+. .. ...-..+.+||+|....+++||-
T Consensus 187 e~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~-~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 187 ECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVT-NPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCC-CTTCCEEEEEECTTTCCEEEEET
T ss_pred EEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccccc-CcCCceEEEEEcCCCCEEEEeCC
Confidence 776 776554444678999999999999999876422110 11 11112459999996566667663
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.79 E-value=4.1e-07 Score=93.44 Aligned_cols=185 Identities=15% Similarity=0.063 Sum_probs=126.1
Q ss_pred CC-eEEEE-eCCCcEEEEeCCCCceEEEeeC-ccccEEEEEE-e-CCCCEEEEEc------------------CCCcEEE
Q 007306 374 QD-LFAFG-FDDSSILVHCPCTKKTKAKLKG-HQNRITCLAY-S-LSLNVLVSSG------------------ADAQLCV 430 (608)
Q Consensus 374 ~~-~l~~~-~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~s~~------------------~d~~i~v 430 (608)
|| ++++. ..++.|.+.|+.+.++.+.+.- ....+..+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 77 55444 4566799999999998875543 2345788887 5 9999998884 2457899
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCC---------------------------------
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG--------------------------------- 476 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~--------------------------------- 476 (608)
.|..+.+.... +.-+. ....++++|+|+++++ +.+.
T Consensus 180 ID~~t~~v~~q-----I~Vgg-----~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 180 VDADKWEVAWQ-----VLVSG-----NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EETTTTEEEEE-----EEESS-----CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EECCCCeEEEE-----EEeCC-----CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 99988543322 32221 2345789999999998 4221
Q ss_pred -----cEEEEECCC--Cce-eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCc------------eeEE
Q 007306 477 -----QIDVYEAPT--LNH-TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLE------------LRCQ 535 (608)
Q Consensus 477 -----~i~iwd~~~--~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~------------~~~~ 535 (608)
.|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+++|.++|+.+.+ ....
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred eeEECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 367777776 444 344433 34566789999999888766 46899999999653 1222
Q ss_pred EeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 536 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 536 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
.. .| .....++|+| +|...++.--|++|.+|++.++
T Consensus 327 v~------vG-----~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a 362 (595)
T 1fwx_A 327 PE------LG-----LGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDA 362 (595)
T ss_dssp CB------CC-----SCEEEEEECT-TSEEEEEETTTTEEEEEEHHHH
T ss_pred cC------CC-----CCcceEEECC-CCeEEEEEecCCcEEEEEhhHh
Confidence 21 12 1255899999 7865666778999999999773
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.76 E-value=3.5e-06 Score=76.75 Aligned_cols=201 Identities=11% Similarity=0.025 Sum_probs=126.8
Q ss_pred ceeeEecCCCC--CeEEEEEcCCC-eEEEEeCC--CcEEEEeCCCCceEEEeeCcccc-EEEEEEeCCCCEEEEEcCCCc
Q 007306 354 QTLATFANPPP--IATYFILLPQD-LFAFGFDD--SSILVHCPCTKKTKAKLKGHQNR-ITCLAYSLSLNVLVSSGADAQ 427 (608)
Q Consensus 354 ~~~~~~~~~~~--~v~~~~~~~~~-~l~~~~~d--~~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~~ 427 (608)
+.+.++ +|.. ....+.|++ + ++.+.+.+ ..|+.+|+.+++.+......... --.+++. +++..+..-.++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 345555 4543 345788886 6 66666665 48999999999998877643221 1234443 2344555567899
Q ss_pred EEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECCCCceeeeecCCCCC---CCeEE
Q 007306 428 LCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAPTLNHTSQLVPDKMD---LPITY 503 (608)
Q Consensus 428 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~---~~v~~ 503 (608)
+.+||..+.+.. .++..+.. + ..+ .++++.|+++ .++.|.++|..+.+.+.++....+. ..+..
T Consensus 87 v~v~D~~tl~~~-----~ti~~~~~---G--wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 87 GFVYDLATLTPR-----ARFRYPGE---G--WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEEETTTTEEE-----EEEECSSC---C--CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEECCcCcEE-----EEEeCCCC---c--eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 999999985433 32332222 1 233 3567666664 5788999999999988888764322 34556
Q ss_pred EEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCc---ccccccEEEEEecCCCCEEEEEe
Q 007306 504 ATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTI---SLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 504 ~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~---~~~v~~~~v~~sp~d~~~las~s 570 (608)
+.+. +|+..+....++.|.+.|..+|+.+..+......+.... ...-..+.+||+|....+++||-
T Consensus 155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6665 666554444678999999999999999886533221100 11112459999995455556653
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=1.2e-06 Score=80.41 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=123.7
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeE--EEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 325 DSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATFANPPPIAT--YFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 325 ~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
.-...+.|+ +.+..+.+ +|.|+++|+++++.+..+ -.. ... .+++..+...+....++.+.+||..+.+.+.++
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 445788888 54555555 789999999999998887 322 332 344443334444557889999999999999888
Q ss_pred eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEE
Q 007306 401 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 479 (608)
Q Consensus 401 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~ 479 (608)
.... .-.. ++++++.|+.+..++.|.++|..+.+......+.. .+.. -..++.+.|. +|+..+.. .++.|.
T Consensus 133 ~~~~-eGwG--Lt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~--~g~~--v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSG-EGWG--LCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL--RGQP--VELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp ECSS-CCCC--EEEETTEEEEECSSSEEEEECTTTCCEEEEEECEE--TTEE--CCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred eCCC-ceeE--EecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC--CCcc--cccccccEEe-CCEEEEEECCCCeEE
Confidence 7432 2223 34567888887779999999999866544333331 1110 0245677777 67544445 578999
Q ss_pred EEECCCCceeeeecCCC-----------CCCCeEEEEEecCCCEEEEEEc
Q 007306 480 VYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
+.|.++++.+..+...+ .......++|+|+++.|+..+.
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999887775421 1346788999998765555443
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.75 E-value=1.8e-06 Score=79.28 Aligned_cols=185 Identities=12% Similarity=0.054 Sum_probs=124.1
Q ss_pred CeEEEEEe-CCEEEEEe-CC--cEEEEEcCCCceeeEecCCCCCe-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEe
Q 007306 326 SISCFALR-GSHLFSAS-GG--KISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKL 400 (608)
Q Consensus 326 ~v~~v~~s-~~~l~s~~-d~--~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 400 (608)
-...+.|+ +.+..+.+ +| .|+++|+++++.+..+....... -.++...+...+....++.+.+||..+.+.+.++
T Consensus 44 ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 34788888 65555555 55 89999999999998887543321 2244432224444556889999999999999888
Q ss_pred eCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEE
Q 007306 401 KGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 479 (608)
Q Consensus 401 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~ 479 (608)
.... ....++++++.|+.+..++.|.++|..+.+......+. ..+... ..++.+.+. +|+..+.. .++.|.
T Consensus 124 ~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~--~~g~~~--~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 124 NYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVT--AHGEEL--PELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp ECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECE--ETTEEC--CCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred ECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEec--cCCccc--cccceeEEE-CCEEEEEEccCCeEE
Confidence 7432 22334467777777666788999999986554433332 111110 235567776 67544445 678999
Q ss_pred EEECCCCceeeeecCCC----------CCCCeEEEEEecCCCEEEEEEc
Q 007306 480 VYEAPTLNHTSQLVPDK----------MDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
+.|.++++.+..+...+ .......++|+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999988876531 1235688999999887777665
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.69 E-value=7.5e-06 Score=79.83 Aligned_cols=233 Identities=12% Similarity=0.017 Sum_probs=143.4
Q ss_pred eEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecC--------------------CCCCeEEEEEcC-CCeEEEEeC
Q 007306 327 ISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFAN--------------------PPPIATYFILLP-QDLFAFGFD 382 (608)
Q Consensus 327 v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~l~~~~~ 382 (608)
..+++|. +++++++. ++.|..|+..+++.. .+.. ....+..+++.+ ++.|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 4466777 56577777 889999988765432 2210 013467899998 565555655
Q ss_pred CCcEEEEeCCCCceEEEeeC-----ccccEEEEEEeC-CCCEEEEEcC-----------------CCcEEEEECCCCcee
Q 007306 383 DSSILVHCPCTKKTKAKLKG-----HQNRITCLAYSL-SLNVLVSSGA-----------------DAQLCVWDAVGWKKL 439 (608)
Q Consensus 383 d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~s~~~-----------------d~~i~vwd~~~~~~~ 439 (608)
.+.|..+|..++.. ..+.. .......+++.+ +|+..++-.. ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 56688999876543 22221 123578899999 9987776532 367888888764321
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCc--eeeeecCCCCCCCeEEEEEecCCCEEEE
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLN--HTSQLVPDKMDLPITYATYSCDGKCIYV 515 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s 515 (608)
. ...+- .....++++|+|+.|+++ ..+.|.+|++.... ....+.. ..+ ...++++++|++.++
T Consensus 179 ---~---~~~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 179 ---L---LLKEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp ---E---EEEEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEE
T ss_pred ---E---eccCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEE
Confidence 1 11111 234579999999977764 56789999986421 1122211 123 778999999987766
Q ss_pred EEc----------CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 516 SCK----------SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 516 g~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
... .+.|..+|.. ++.+..+... .|.. ...+..+++ . ++.++++...++.|..+++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~----~g~~--~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP----PPFA--GEHFEQIQE-H-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC----TTTT--TSCCCEEEE-E-TTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECC----CCCc--cccceEEEE-e-CCEEEEeecCCCceEEEecccc
Confidence 544 4678888874 6666665422 1210 112336666 3 5666666667889999988643
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.67 E-value=1.3e-05 Score=72.93 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=124.6
Q ss_pred CCCeEEEEEe-CCEEEEEe-C--CcEEEEEcCCCceeeEecCCCCCe-EEEEEcCCCeEEEEeCCCcEEEEeCCCCceEE
Q 007306 324 KDSISCFALR-GSHLFSAS-G--GKISIFSLETFQTLATFANPPPIA-TYFILLPQDLFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 324 ~~~v~~v~~s-~~~l~s~~-d--~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
..-...+.|+ +.+..+.+ + +.|+.+|+.+|+.+..+....... -.+++..+........++.+.+||..+.+.+.
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRA 99 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEE
Confidence 3456689999 55555555 4 489999999999998886443322 23444332244555678999999999999998
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCc
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQ 477 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~ 477 (608)
++..... ...+.+++..|+.+..++.|.++|..+.+......+..-.... ..++.+.+. +|+..+.. .++.
T Consensus 100 ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~----~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 100 RFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL----DNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEEC----CCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccc----ccceeeEEe-CCEEEEEECCCCe
Confidence 8874322 2233456777777777899999999986554433332100011 245666666 56644445 5789
Q ss_pred EEEEECCCCceeeeecCCC-----------CCCCeEEEEEecCCCEEEEEEc
Q 007306 478 IDVYEAPTLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 478 i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
|.+.|.++|+.+..+...+ .......++++|+++.|+..+.
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999999888776431 1246788999998877666554
No 262
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.67 E-value=0.00032 Score=68.30 Aligned_cols=276 Identities=10% Similarity=0.091 Sum_probs=152.6
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 337 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l 337 (608)
...+.+|.|.+++..++ ++.+|.| +...+.++ -|....... ......+.++.|. +..+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~-------------tW~~~~~~~------~~~~~~~~~i~~~~~~~~ 93 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQ-------------TWEPRTLVL------DHSDYRFNSVSFQGNEGW 93 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTS-------------SCEECCCCC------SCCCCEEEEEEEETTEEE
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCC-------------CCeECCCCC------CCCCccEEEEEecCCeEE
Confidence 45799999988888777 4566654 22222222 122111000 0124467888888 5555
Q ss_pred EEEeCCcEEEEEcCCCceeeEec---CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE-EEeeCccccEEEEEE
Q 007306 338 FSASGGKISIFSLETFQTLATFA---NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLAY 412 (608)
Q Consensus 338 ~s~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~ 412 (608)
+.+.++.|.. ..+.|+.-.... .....+..+.+.+++ .++++ .++.|..- .+.|+.- .........+..+++
T Consensus 94 ~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 94 IVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred EEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence 5444775443 333344333332 233457778877777 55554 45654332 2233322 222345567889999
Q ss_pred eCCCCEEEEEcCCCcEEEEEC--CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceee
Q 007306 413 SLSLNVLVSSGADAQLCVWDA--VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS 490 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~ 490 (608)
.|++.+++.+...+..+-+|- .+.+ .+. .... ..+..+.+.++++.++++.+|.+++.+...++.-.
T Consensus 171 ~~~~~~~~~g~~G~~~~S~d~gG~tW~-----~~~---~~~~---~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~ 239 (327)
T 2xbg_A 171 SPSGEYVAVSSRGSFYSTWEPGQTAWE-----PHN---RTTS---RRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWG 239 (327)
T ss_dssp CTTSCEEEEETTSSEEEEECTTCSSCE-----EEE---CCSS---SCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEC
T ss_pred cCCCcEEEEECCCcEEEEeCCCCCcee-----ECC---CCCC---CccceeEECCCCCEEEEeCCceEEEecCCCCCeeE
Confidence 999888876654333333442 2211 111 1122 46889999999988877888888877533344333
Q ss_pred eecCC--CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 491 QLVPD--KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 491 ~~~~~--~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
.+..+ .+...+.++++.+++..++++. +|.| .+..+.|+.-..+... .+. ...++ ++.|.+ + ..++.
T Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~----~~~-~~~~~--~v~~~~-~-~~~~~ 308 (327)
T 2xbg_A 240 ELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDV----KKV-PSNFY--KILFFS-P-DQGFI 308 (327)
T ss_dssp CCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGG----TTS-SSCCC--EEEEEE-T-TEEEE
T ss_pred eccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCcc----CCC-CCCeE--EEEEEC-C-CceEE
Confidence 33221 1234688999998888777664 6766 4455556544333210 011 12345 788876 3 45667
Q ss_pred EeCCCcEEEEeC
Q 007306 569 GLTNGRVHVIEP 580 (608)
Q Consensus 569 ~s~Dg~v~iW~~ 580 (608)
++.+|.|.-++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 778997766553
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.61 E-value=2.7e-05 Score=75.90 Aligned_cols=246 Identities=11% Similarity=-0.014 Sum_probs=147.1
Q ss_pred CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccC--------CCCCCeEEEE
Q 007306 260 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA--------DPKDSISCFA 331 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~v~ 331 (608)
....+++++++|++++++..++.|..|+..++.. ..|......... .... .....+..++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-----------VDFAYASPYWNK-AFCENSTDAEKRPLCGRTYDIS 86 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-----------EEEEESCTTCCH-HHHTTCCCGGGHHHHCCEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-----------EEEecccccccc-cccccccchhccccCCCCceEE
Confidence 3456788999998788888889998887665432 112110000000 0000 0113467888
Q ss_pred Ee--CCEEEEEe-CCcEEEEEcCCCceeeEecC-----CCCCeEEEEEcC-CC-eEEEEeC-----------------CC
Q 007306 332 LR--GSHLFSAS-GGKISIFSLETFQTLATFAN-----PPPIATYFILLP-QD-LFAFGFD-----------------DS 384 (608)
Q Consensus 332 ~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~-~l~~~~~-----------------d~ 384 (608)
+. +..|+.+. .+.|..+|..++.. ..+.. .......+++.+ +| ..++... ++
T Consensus 87 ~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 87 YNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCc
Confidence 87 45677776 66688888775542 22211 123467899999 88 4444322 36
Q ss_pred cEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEE-cCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEE
Q 007306 385 SILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQF 463 (608)
Q Consensus 385 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 463 (608)
.|..||..+++...... .....+.++++|+++.|..+ +.++.|.+|++...... ... ...... + ...+++
T Consensus 166 ~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~---~~~-~~~~~~---g-P~gi~~ 236 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG---TAE-VLVKIP---N-PGNIKR 236 (322)
T ss_dssp EEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT---CEE-EEEECS---S-EEEEEE
T ss_pred eEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC---ccc-eEEeCC---C-CCCeEE
Confidence 79999987776433222 22345679999999865544 56789999998753210 111 111111 3 667999
Q ss_pred cCCCCEEEEE-e----------CCcEEEEECCCCceeeeecCCCC--CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 464 HPDQIHLLSI-H----------EGQIDVYEAPTLNHTSQLVPDKM--DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 464 sp~~~~l~~~-~----------d~~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
+++|.+.++. . .+.|..+|. .++.+..+..... ...++.+++ .+++++++...++.|..+++..
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 9999877764 3 366888887 5777777654321 234666666 4566555555678888888754
No 264
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.61 E-value=0.00011 Score=71.16 Aligned_cols=227 Identities=11% Similarity=-0.028 Sum_probs=141.4
Q ss_pred EEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC----CceEEEeeCccccEEE
Q 007306 336 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT----KKTKAKLKGHQNRITC 409 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~ 409 (608)
+|+.+....|+..|+.+.+....+. ....+..++|++.+ .+++-..++.|..+++.+ ......+.........
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4555666789999998776555443 34566799999866 555556678999999876 2222223222245678
Q ss_pred EEEeCCC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eC-CcEEEEECCC
Q 007306 410 LAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPT 485 (608)
Q Consensus 410 ~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d-~~i~iwd~~~ 485 (608)
+++++.+ +..++-...+.|.++|+.... ...+..... .....++++|.+..|+.+ .. +.|..+++.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~------~~~~~~~~~---~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d- 151 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 151 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSS------EEEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCc------eEEEEECCC---CCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-
Confidence 9999754 455555678899999987622 111222111 356899999977666653 22 678888884
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC
Q 007306 486 LNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 564 (608)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 564 (608)
|.....+... .-.....+++++++..|+.+. ..+.|..+|+..... ..+... + .....+..+++.. +.
T Consensus 152 G~~~~~~~~~-~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~-----~--~~~~~P~giav~~--~~ 220 (316)
T 1ijq_A 152 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILED-----E--KRLAHPFSLAVFE--DK 220 (316)
T ss_dssp SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----T--TTTSSEEEEEEET--TE
T ss_pred CCCeEEEEEC-CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeec-----C--CccCCcEEEEEEC--CE
Confidence 4444444321 245688999999887777665 457999999975433 333210 0 0111234677643 56
Q ss_pred EEEEEeCCCcEEEEeCCCCc
Q 007306 565 RIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 565 ~las~s~Dg~v~iW~~~~~~ 584 (608)
++++-...+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 66666677889988876654
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.57 E-value=0.00022 Score=70.17 Aligned_cols=233 Identities=12% Similarity=0.015 Sum_probs=144.8
Q ss_pred EEEEEe-CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCcc
Q 007306 328 SCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQ 404 (608)
Q Consensus 328 ~~v~~s-~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 404 (608)
.|.+.. ..+|+.+....|+..++........+. ....+..++|++.+ ++++-...+.|..+++..+..........
T Consensus 37 ~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 37 SCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp CEEESSSCCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred cccccccCceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 344444 445665666678888887655444443 33457799999765 55555567899999988765444333333
Q ss_pred ccEEEEEEeCCC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eC-CcEEE
Q 007306 405 NRITCLAYSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDV 480 (608)
Q Consensus 405 ~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d-~~i~i 480 (608)
.....+++.+.+ +++++-...+.|.+.++.... ...+..... .....++++|.+..|+.+ .. +.|..
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~------~~~l~~~~l---~~P~~iavdp~~g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH------RKVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEA 186 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEEECTTC---SCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc------eEEEEeCCC---CCcceEEEecCcCeEEEeccCCCCEEEE
Confidence 456789999854 455666667899999987632 111222221 356899999977776664 34 77988
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEe
Q 007306 481 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAH 559 (608)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~s 559 (608)
+++. |.....+... .......++++|++..|+.+. ..+.|..+++........+.. + ..++..+++.
T Consensus 187 ~~~d-G~~~~~~~~~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~------~----~~~P~giav~ 254 (349)
T 3v64_C 187 SSMD-GSGRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G----LPHPFAITVF 254 (349)
T ss_dssp EETT-SCSCEESCCS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S----CSSEEEEEEE
T ss_pred EeCC-CCCcEEEEEC-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC------C----CCCceEEEEE
Confidence 8885 4433333221 245678999998777776654 457899999875443322221 1 1124467773
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 560 PLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 560 p~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
++.++++-...+.|...+..+++
T Consensus 255 --~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 255 --EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp --TTEEEEEETTTTEEEEEETTTCC
T ss_pred --CCEEEEecCCCCeEEEEEccCCC
Confidence 35566666677888888755554
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.54 E-value=0.00015 Score=72.44 Aligned_cols=227 Identities=11% Similarity=-0.008 Sum_probs=143.5
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEE
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLA 411 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~ 411 (608)
..+|+.+....|+.+++..+....... ....+..++|++.+ ++++-...+.|..+++..+.....+.........++
T Consensus 87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 87 EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CCEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred cceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 455666666778888887665544443 33456789999765 555656778999999887654444433334567789
Q ss_pred EeCCC-CEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--eC-CcEEEEECCCCc
Q 007306 412 YSLSL-NVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HE-GQIDVYEAPTLN 487 (608)
Q Consensus 412 ~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d-~~i~iwd~~~~~ 487 (608)
+.+.+ .++++-...+.|.+.++.... ...+..... .....++++|.+..|+.+ .. +.|..+++. +.
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~------~~~l~~~~l---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~ 235 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAH------RKVLLWQSL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GS 235 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCS------CEEEECSSC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCc------eEEeecCCC---CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CC
Confidence 99754 445555667888888887522 111222222 357899999987777764 33 678888885 43
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEE
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 566 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 566 (608)
....+... .......++|+|++..|+.+. ..+.|..+++........+.. + ...+..+++. ++.++
T Consensus 236 ~~~~~~~~-~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~------~----~~~P~giav~--~~~ly 302 (386)
T 3v65_B 236 GRRIIADT-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ------G----LPHPFAITVF--EDSLY 302 (386)
T ss_dssp SCEEEECS-SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS------S----CSSEEEEEEE--TTEEE
T ss_pred CcEEEEEC-CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC------C----CCCceEEEEE--CCEEE
Confidence 33333221 245678999998777766654 457899999875443332221 1 1124467773 35666
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 007306 567 ALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 567 as~s~Dg~v~iW~~~~~~ 584 (608)
++-...+.|..++..+++
T Consensus 303 ~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EeeCCCCeEEEEECCCCc
Confidence 676677888888865554
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.53 E-value=0.00033 Score=68.79 Aligned_cols=201 Identities=8% Similarity=-0.038 Sum_probs=129.3
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 007306 325 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
.....++|. ++.|+.+. .+.|..+++..+.....+.........+++.+.+ ++++-...+.|.+.++.......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 447788998 56666665 6889999988665444443333445688998755 55566667899999987554333
Q ss_pred EeeCccccEEEEEEeCCCCEEE-EEcCC-CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e
Q 007306 399 KLKGHQNRITCLAYSLSLNVLV-SSGAD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 474 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~-s~~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~ 474 (608)
.+.........++++|.+..|. +-... +.|..+++.... ...+..... ...+.++++|++..|+.+ .
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEESCCSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCcceEEEeCCCCEEEEEECC
Confidence 3333445678999999655544 44444 788888887522 111111111 356899999988777764 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+.|..+|+.. .....+... .......+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 224 ~~~I~~~~~dG-~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDG-SHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTS-CSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCC-CceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 67899999854 333333221 2456778888 345555555567889999877777666554
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.51 E-value=0.00039 Score=67.25 Aligned_cols=202 Identities=8% Similarity=-0.026 Sum_probs=126.3
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCC---Cce-eeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 007306 325 DSISCFALR--GSHLFSAS--GGKISIFSLET---FQT-LATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 394 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~---~~~-~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~ 394 (608)
.....++|. ++.|+.+. ++.|..+++.. +.. ...+.........+++.+.+ .+++-...+.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 456788998 56666666 68999999875 122 22232222345688998755 5555567789999998755
Q ss_pred ceEEEeeCccccEEEEEEeCCCCEEEEEcC-C-CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 395 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.....+.........++++|.+..|..+.. . +.|...++.... ...+..... ...+.++++|++..|+.
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~------~~~~~~~~~---~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENI---QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSC---SCEEEEEEETTTTEEEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC------eEEEEECCC---CCceEEEEeccCCEEEE
Confidence 433333333456789999996665555443 3 688888876521 111111111 35789999998877776
Q ss_pred E--eCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 473 I--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 473 ~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
+ ..+.|..+|+. +...+.+.. .........+++. .+..+++-...+.|..++..+|+....+.
T Consensus 181 ~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 4 56789999996 433333322 1123456778885 35555555567899999988887666554
No 269
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.50 E-value=1.1e-05 Score=87.11 Aligned_cols=272 Identities=8% Similarity=0.017 Sum_probs=146.8
Q ss_pred eEeecC-CCCeEEEeecCC-----------eEEEeeccCCCCCCceeeEe-ecCCCCCCcEEEEEEeeCCCEEEEEeC-C
Q 007306 215 ESTSLP-DADSAVCAKSLE-----------KSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQ-T 280 (608)
Q Consensus 215 ~~~~s~-dg~~l~~~~~d~-----------~i~iWd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~fsp~g~~l~s~s~-d 280 (608)
...+.| +|+.++.|+.+. .+.+||... .+...+. ++. .+.....++++.++|+.++.|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t----~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST----GIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT----CCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC----CcEEeCcccCC-CCCCccccccCCCCCCEEEeCCCCC
Confidence 346777 899989887543 578899874 2222211 211 12333445778899999999985 4
Q ss_pred CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe--C-----CcEEEEEcCC
Q 007306 281 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS--G-----GKISIFSLET 352 (608)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~--d-----~~i~vwd~~~ 352 (608)
+.+.+||..++. |..... +. .....-.++.+. +++++.|+ + ..+.+||..+
T Consensus 265 ~~v~~yd~~t~~--------------W~~~~~------~~-~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 265 KKTSLYDSSSDS--------------WIPGPD------MQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp TCEEEEEGGGTE--------------EEECCC------CS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CceEEecCcCCc--------------eeECCC------CC-ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 577777766543 321110 00 111222333443 77777776 3 4699999987
Q ss_pred CceeeEe----cCCCCCeEEEEEcCCC-eEEEEeCCC---------cEEEEeCCCCceEEEeeCccc---------cEEE
Q 007306 353 FQTLATF----ANPPPIATYFILLPQD-LFAFGFDDS---------SILVHCPCTKKTKAKLKGHQN---------RITC 409 (608)
Q Consensus 353 ~~~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~---------~i~vwd~~~~~~~~~~~~~~~---------~v~~ 409 (608)
++....- ......-....+..++ .++.|+.+| .+..||..+.........+.. .-.+
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~a 403 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 403 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCce
Confidence 6543320 0000000001123445 445554443 567888887764433322211 2344
Q ss_pred EEEeC-CCCEEEEEcCCC-----------cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC-
Q 007306 410 LAYSL-SLNVLVSSGADA-----------QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE- 475 (608)
Q Consensus 410 ~~~~~-~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d- 475 (608)
+.+.. ++++++.|+.++ .|.+||..+..-.... ...+... ..-.+++..|+++.++. |.+
T Consensus 404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~-----R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFA-----RTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSC-----CBSCEEEECTTSCEEEECCBSB
T ss_pred EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCC-----cccCCeEECCCCCEEEECCccc
Confidence 55544 778888887543 5778887763321100 0011111 11235567789999888 433
Q ss_pred ----------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 476 ----------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 476 ----------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
..+.+||..+.+....-.............+.+||+.++.|+.
T Consensus 478 ~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 478 GIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999877654321111111223334556799999999985
No 270
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.49 E-value=0.00027 Score=68.08 Aligned_cols=223 Identities=13% Similarity=-0.019 Sum_probs=133.7
Q ss_pred CcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 260 GRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 260 ~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
.....++|+++|+.+++-..++.|..|+...... ..+. .......+++. ++++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-----------~~~~--------------~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-----------IHAT--------------VEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-----------EEEE--------------CSSEEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-----------EEEe--------------CCCCceeEEEcCCCcEE
Confidence 4677899999999666666788888776543211 1121 12357788888 6654
Q ss_pred EEEe-CC--cEEEEEcCCCceeeEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCce-EEEee---------C
Q 007306 338 FSAS-GG--KISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKT-KAKLK---------G 402 (608)
Q Consensus 338 ~s~~-d~--~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~-~~~~~---------~ 402 (608)
++.. .. .|..+|..+++....... .......++..+++ .+++...++.|+.+|..+++. +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~ 166 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES 166 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence 4443 33 366777777775443322 22233455555666 555555688999999876531 11110 1
Q ss_pred ccccEEEEEEeCCCCEE-EEEcCCCcEEEEECCC-CceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEE
Q 007306 403 HQNRITCLAYSLSLNVL-VSSGADAQLCVWDAVG-WKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQID 479 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~ 479 (608)
.-...+.+ +|+++.| ++-...+.|..||+.. +.... ...+... .....++++++|++.++. ..+.|.
T Consensus 167 ~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~---~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 167 VFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGE---PEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCC---CEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred CCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCc---cEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11234555 7888755 4455678999999875 22111 1111111 124568999999876663 578899
Q ss_pred EEECCCCceee--eecCCCCCCCeEEEEEe---cCCCEEEEEEcCC
Q 007306 480 VYEAPTLNHTS--QLVPDKMDLPITYATYS---CDGKCIYVSCKSG 520 (608)
Q Consensus 480 iwd~~~~~~~~--~~~~~~~~~~v~~~~~s---~~~~~l~sg~~dg 520 (608)
++|.. ++... .+.. .....++++|. |+++.|+..+..+
T Consensus 237 ~~~~~-G~~~~~~~~~~--~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 237 RIAPD-RSTTIIAQAEQ--GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECTT-CCEEEEECGGG--TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EECCC-CCEEEEeeccc--ccCCceEEEEecccCCCCEEEEECCCC
Confidence 99974 65532 3322 14668999998 8988877766543
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.46 E-value=0.00061 Score=68.25 Aligned_cols=230 Identities=10% Similarity=-0.025 Sum_probs=145.0
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC----ceEEEeeCccccE
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI 407 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v 407 (608)
..+|+.+....|+..++........+. ....+..++|++.+ .+++-...+.|+.+++... .....+.......
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred cceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 345666667888999988665444443 44567799999866 5555556788999998752 2233333344567
Q ss_pred EEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE---eCCcEEEEEC
Q 007306 408 TCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEA 483 (608)
Q Consensus 408 ~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~---~d~~i~iwd~ 483 (608)
..+++.+ .+++.++-...+.|.+.++.... ...+..... .....|+++|.+..|+.+ ..+.|...++
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~------~~~l~~~~~---~~P~~iavdp~~g~ly~td~~~~~~I~~~~~ 232 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCS------EEEEEECSS---CCEEEEEEETTTTEEEEEECSSSCCEEEEET
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCc------eEEEEeCCC---CCcceEEEecccCeEEEEeCCCCCEEEEEeC
Confidence 8899998 45556666667899999987632 111222222 357899999977776664 2468999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
. |.....+... .-.....+++++++..|+.+.. .+.|..+|+............ .......+++.. +
T Consensus 233 d-G~~~~~~~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--------~~l~~P~gl~v~--~ 300 (400)
T 3p5b_L 233 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVF--E 300 (400)
T ss_dssp T-SCSCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS--------STTSSEEEEEEE--T
T ss_pred C-CCccEEEEEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC--------CCCCCCEEEEEe--C
Confidence 5 4433343221 2467889999988887777654 578999998765433333211 111123366664 3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcc
Q 007306 563 PNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
+.++.+-...+.|..++..+++.
T Consensus 301 ~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 301 DKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp TEEEEEESSSCSEEEEESSSCCC
T ss_pred CEEEEecCCCCeEEEEEcCCCCc
Confidence 45666666778898888766643
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=0.00011 Score=70.95 Aligned_cols=228 Identities=9% Similarity=-0.006 Sum_probs=133.5
Q ss_pred CCeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC-C-cEEEEeCCCCceEE
Q 007306 325 DSISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-S-SILVHCPCTKKTKA 398 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-~-~i~vwd~~~~~~~~ 398 (608)
.....++|+ ++++++-. ++.|..||... +....+. ....+..+++.++| .+++.... + .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 456788998 66555554 78999999875 3333333 23567899999999 55554332 2 47778877776543
Q ss_pred EeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecc--cc-eee-eeccCCCCccceEEEEEcCCCCEEEEE
Q 007306 399 KLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS--KF-LHS-FQTGLVPETTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 399 ~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~-~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~~ 473 (608)
.... .......++..+++..+++-..++.|.++|..++..... .. +.. ...+.. ...+.+ +|+++.|+++
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv~ 184 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYVS 184 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEEE
Confidence 3221 122334555555555555555688999999875321000 00 000 000111 234455 8888888774
Q ss_pred --eCCcEEEEECCC-Cce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcc
Q 007306 474 --HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTIS 548 (608)
Q Consensus 474 --~d~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~ 548 (608)
..+.|..|++.. ++. ...+.. ......++++++|+++++....+.|.+++.. ++........ .
T Consensus 185 d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~--------~ 252 (306)
T 2p4o_A 185 NTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE--------Q 252 (306)
T ss_dssp ETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG--------G
T ss_pred eCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc--------c
Confidence 567899999864 332 112211 1235568999999887777778899999975 6543221111 1
Q ss_pred cccccEEEEEe---cCCCCEEEEEeCC
Q 007306 549 LELYPLVIAAH---PLEPNRIALGLTN 572 (608)
Q Consensus 549 ~~v~~~~v~~s---p~d~~~las~s~D 572 (608)
....+++++|. | |+..|..++..
T Consensus 253 ~~~~p~~~a~~g~~~-d~~~LyVt~~~ 278 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEG-DCTAIYVVTNG 278 (306)
T ss_dssp TCTTEEEEEECCSTT-TTTEEEEEECT
T ss_pred ccCCceEEEEecccC-CCCEEEEECCC
Confidence 11235689998 7 66666555543
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.44 E-value=0.00026 Score=70.63 Aligned_cols=201 Identities=8% Similarity=-0.038 Sum_probs=130.0
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 007306 325 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
.....++|. ++.|+.+. .+.|..+++..+.....+.........+++.+.+ ++++-...+.|.+.++.......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 457789998 56666665 6889999988665444444333345678888755 55566667789999987554333
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEc-CC-CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSG-AD-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 474 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~-~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~ 474 (608)
.+.........++++|.+..|.... .. +.|..+++.... ...+..... ...+.++++|++..|+.+ .
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~ 266 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHL---FWPNGLTIDYAGRRMYWVDAK 266 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSC---SCEEEEEEEGGGTEEEEEETT
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCC---CCeeeEEEeCCCCEEEEEECC
Confidence 3433445688999999666555444 34 678888887521 111111111 356899999887777764 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+.|..+|+.. .....+... .......+++ ..+..+++....+.|..++..+|+....+.
T Consensus 267 ~~~I~~~d~dG-~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 267 HHVIERANLDG-SHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTEEEEECTTS-CSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCC-CeeEEEEEC-CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 67899999854 333333322 2456778888 444555555567889999977887776664
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.42 E-value=0.00033 Score=64.64 Aligned_cols=217 Identities=12% Similarity=0.049 Sum_probs=131.5
Q ss_pred EecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECC
Q 007306 358 TFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434 (608)
Q Consensus 358 ~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 434 (608)
.+.+-...+..++|+|++ ++++...++.|...|.. ++.++.+.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 344555679999999987 55667788899999998 888777642 22567889999999877776677899999886
Q ss_pred CCceecc-cceeeeeccCCCCccceEEEEEcCCCCEEEEE-eCCcEEEEECC---CCceeeee-----cCCCCCCCeEEE
Q 007306 435 GWKKLCS-KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HEGQIDVYEAP---TLNHTSQL-----VPDKMDLPITYA 504 (608)
Q Consensus 435 ~~~~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d~~i~iwd~~---~~~~~~~~-----~~~~~~~~v~~~ 504 (608)
....... .... +..+..+.......++++|.+..|+++ ......+|.+. ....+... ....+...+.++
T Consensus 100 ~~~~i~~~~~~~-~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIK-IPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEE-CCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCeeeeeeeec-cccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 6432110 1111 111111112457899999998777764 33334444442 11111111 111124467899
Q ss_pred EEecCCC-EEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 505 TYSCDGK-CIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 505 ~~s~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
+++|... +++....+..|.++|.. |+.+..+...... .|-...--..-.++|.| +|++.++ +....++.+..
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~-~~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS-RGLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG-GGCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc-CCcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9998654 55556667889999976 5566665543100 00000001234899999 7876665 66666666654
No 275
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.40 E-value=0.00084 Score=67.26 Aligned_cols=204 Identities=8% Similarity=-0.036 Sum_probs=130.3
Q ss_pred CCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCC----ceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC
Q 007306 323 PKDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 392 (608)
Q Consensus 323 ~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~ 392 (608)
....+..++|. ++.|+.+. .+.|..+++... .....+.........+++.+.+ ++++-...+.|.+.++.
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567889998 66666666 688999988752 2333333344567789998844 55666677899999988
Q ss_pred CCceEEEeeCccccEEEEEEeCCCCEEEEEcC--CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 393 TKKTKAKLKGHQNRITCLAYSLSLNVLVSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 393 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
.......+.........++++|.+..|..... .+.|...++.... ...+..... ...+.|+++|++..|
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~------~~~~~~~~l---~~P~glavd~~~~~l 260 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENI---QWPNGITLDLLSGRL 260 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS------CEEEECSSC---SCEEEEEEETTTTEE
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc------cEEEEECCC---CceEEEEEEeCCCEE
Confidence 66544444444456889999996666555442 3788888887622 111222211 357899999988888
Q ss_pred EEE--eCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 471 LSI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 471 ~~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
+.+ ..+.|..+|+.. .....+.. .........+++. .+..+.+-...+.|..+|..+|+.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG-~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTS-CCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCC-CccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 774 567899999854 33333322 1123456677773 33444455566889999988887766654
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.40 E-value=2.2e-05 Score=84.61 Aligned_cols=234 Identities=10% Similarity=-0.013 Sum_probs=123.9
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCC-CeEEEEEcCCC-eEEEEe-CC-----CcEEEEeCCC
Q 007306 326 SISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPP-IATYFILLPQD-LFAFGF-DD-----SSILVHCPCT 393 (608)
Q Consensus 326 ~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~-~l~~~~-~d-----~~i~vwd~~~ 393 (608)
...++++. +++++.|+ ++.+.+||..+++....-..+.. .-.+++..+++ .++.|+ .+ ..+.+||+.+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 34445665 77888887 46899999987654432221211 12345566788 778887 44 4799999988
Q ss_pred CceEEEe----eCccccEEEEEEeCCCCEEEEEcCCC---------cEEEEECCCCceecccceeeeeccC--CCCccce
Q 007306 394 KKTKAKL----KGHQNRITCLAYSLSLNVLVSSGADA---------QLCVWDAVGWKKLCSKFLHSFQTGL--VPETTIV 458 (608)
Q Consensus 394 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~d~---------~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v 458 (608)
++....- ......-....+..++..++.|+.+| .+..||..+..... .......++ .+....-
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~~ 401 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMCG 401 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBTC
T ss_pred CcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCCC
Confidence 7643320 00000000011223455555565443 46788887643211 111001000 0000122
Q ss_pred EEEEEcC-CCCEEEEE-eCC-----------cEEEEECCCCceeeee--cCCCCCCCeEEEEEecCCCEEEEEEcC----
Q 007306 459 NHIQFHP-DQIHLLSI-HEG-----------QIDVYEAPTLNHTSQL--VPDKMDLPITYATYSCDGKCIYVSCKS---- 519 (608)
Q Consensus 459 ~~v~~sp-~~~~l~~~-~d~-----------~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~sg~~d---- 519 (608)
.++.+.. +++.+++| .++ .+.+||..+....... ..+ ....-.+++..|+|+.++.|+.+
T Consensus 402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~ 480 (656)
T 1k3i_A 402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIP 480 (656)
T ss_dssp EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcC
Confidence 3455543 56666664 322 5788888776543322 111 12223345667899999999864
Q ss_pred -------CeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC
Q 007306 520 -------GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT 571 (608)
Q Consensus 520 -------g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~ 571 (608)
..+.+||..+.+-.. +.... ....+..+....| |+.+++.|+.
T Consensus 481 ~~~~~~~~~v~~ydp~t~~W~~-~~~~~-------~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 481 FEDSTPVFTPEIYVPEQDTFYK-QNPNS-------IVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp TCCCSBCCCCEEEEGGGTEEEE-CCCCS-------SCCCTTEEEEECT-TSCEEEEECC
T ss_pred cCCCCcccceEEEcCCCCceee-cCCCC-------CccccccHhhcCC-CcEEEecCCC
Confidence 568999998765332 11110 1112222445668 7899999985
No 277
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=98.33 E-value=2.8e-07 Score=67.50 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=32.8
Q ss_pred ceecchhhhhHHHHHHHHHhhhcHHHHHHHHHhhcCccc
Q 007306 6 MCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFF 44 (608)
Q Consensus 6 ~~~~~~~~~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~ 44 (608)
|+|+++|++ .||++||+|.||.+||.+|+.||++.-
T Consensus 1 msitsdevN---~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 1 MSITSDEVN---FLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp -CCCHHHHH---HHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred CCCcHHHHH---HHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 678999995 999999999999999999999999865
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.31 E-value=0.00043 Score=66.89 Aligned_cols=227 Identities=7% Similarity=-0.041 Sum_probs=138.2
Q ss_pred EEEEEeCCcEEEEEcCCCc-eeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE-EEeeCccccEEEEE
Q 007306 336 HLFSASGGKISIFSLETFQ-TLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRITCLA 411 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~ 411 (608)
+|+.+....|+..++.... ..............++|++.+ .+++-...+.|..+++..+... ..+...-.....++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 3444556678888887653 111111112345688999865 5566667788999998866321 12222223567889
Q ss_pred EeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe---CCcEEEEECCCCc
Q 007306 412 YSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLN 487 (608)
Q Consensus 412 ~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~---d~~i~iwd~~~~~ 487 (608)
+.+ ++.++++-...+.|.++++.... ...+..... .....+++.|.+..|+.+. .+.|...++. |.
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~------~~~l~~~~~---~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~ 155 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSL------RKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GS 155 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCS------CEEEECSSC---SSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SC
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCc------EEEEEeCCC---CCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CC
Confidence 997 45555666667899999987622 111221222 3578999999766666642 4778888884 44
Q ss_pred eeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEE
Q 007306 488 HTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRI 566 (608)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~l 566 (608)
....+... .-.....+++++++..|+.+. ..+.|..+++.......... + ....+..+++.. +.++
T Consensus 156 ~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~---~~~~P~glav~~--~~ly 222 (318)
T 3sov_A 156 SRFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------G---SLPHPFALTLFE--DILY 222 (318)
T ss_dssp SCEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------S---CCSCEEEEEEET--TEEE
T ss_pred CeEEEEEC-CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------C---CCCCceEEEEeC--CEEE
Confidence 33333221 245678999999777776654 45889999987543322221 1 111234666654 4566
Q ss_pred EEEeCCCcEEEEeCCCCcc
Q 007306 567 ALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 567 as~s~Dg~v~iW~~~~~~~ 585 (608)
.+-...+.|..++..+++.
T Consensus 223 wtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEETTTTEEEEEETTTCCS
T ss_pred EEecCCCeEEEEECCCCCc
Confidence 6666778899999877654
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.0006 Score=62.94 Aligned_cols=199 Identities=16% Similarity=0.109 Sum_probs=129.4
Q ss_pred CCCCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecC-CCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc
Q 007306 322 DPKDSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK 395 (608)
Q Consensus 322 ~~~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~ 395 (608)
+-...+..++|. ++.|++.. ++.|...|.. ++.++.+.- .....-.+++.+++ ++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 455679999999 56666655 6889899988 888887742 23567788999888 66666667889999876543
Q ss_pred e---EEEee------CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee-------ccCCCCccceE
Q 007306 396 T---KAKLK------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ-------TGLVPETTIVN 459 (608)
Q Consensus 396 ~---~~~~~------~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~v~ 459 (608)
. +.... ..+.....++|+|.++.|.++.......+|.++. . .....+. +. ..+. ..+.
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~-~~~~~l~-i~~~~~~~~~~~~---~d~S 176 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-L-LSSNELH-ISKDKALQRQFTL---DDVS 176 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-T-TCSSCCE-EEECHHHHHTCCS---SCCC
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-c-ccCCcee-eecchhhcccccc---CCce
Confidence 2 22221 1234568999999998777777665555555541 0 0001111 11 0111 3567
Q ss_pred EEEEcCCCCEEEE-E-eCCcEEEEECCCCceeeeecCCCC-------CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 460 HIQFHPDQIHLLS-I-HEGQIDVYEAPTLNHTSQLVPDKM-------DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 460 ~v~~sp~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
+++++|....+++ + .++.+.++|. +|+.+..+..... -...-.++|.++|+ |+..++.+.++++....
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~~ 253 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQS 253 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC--
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEecC
Confidence 8999998766665 6 5678999997 4666655544310 13568899999998 55557888888876543
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.23 E-value=0.00045 Score=69.95 Aligned_cols=245 Identities=11% Similarity=-0.024 Sum_probs=145.1
Q ss_pred CeEEEEEe-C---CEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC---C-cEEEEeCCCCc
Q 007306 326 SISCFALR-G---SHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD---S-SILVHCPCTKK 395 (608)
Q Consensus 326 ~v~~v~~s-~---~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~-~i~vwd~~~~~ 395 (608)
....++|+ . ..|+.+. .+.|+.+|..+++..... ........++++++| ++++.... . .+...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 35578887 3 6777777 689999999877665443 344567899999999 66555422 1 23334432221
Q ss_pred e-EEEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE
Q 007306 396 T-KAKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 396 ~-~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 473 (608)
. ...+. .......++++| +|.++++-..++.|+.+|..++.... .+. ..+.. ..-..++|+|+|+.|+++
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~--~~~--~~~~~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE--EEV--MMDTK---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE--EEE--ECSCC---SSCEEEEECTTSSEEEEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE--EEe--ccCCC---CCcccEEEeCCCCEEEEE
Confidence 1 01111 223456788999 77777666677889999987643211 111 11111 233479999999977764
Q ss_pred --eCCcEEEEECC--CCce--eeeecCC-C------------CCCCeEEEEE---------ecCCCEEEEEEcCCeEEEE
Q 007306 474 --HEGQIDVYEAP--TLNH--TSQLVPD-K------------MDLPITYATY---------SCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 474 --~d~~i~iwd~~--~~~~--~~~~~~~-~------------~~~~v~~~~~---------s~~~~~l~sg~~dg~i~iw 525 (608)
..+.|+.++.. ++.. ...+... . .-.....+++ .++|.+.++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 56789998865 2321 1122110 0 0234677999 6777777776677899999
Q ss_pred eCCCCceeEEEeceee-ccCCCcc-------cccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 526 DTSTLELRCQINLTAY-AQPGTIS-------LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 526 d~~~~~~~~~~~~~~~-~~~g~~~-------~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+. +|.. .++..... ...|..+ .--++..++++|.++.++++=...+.|+.++++
T Consensus 371 ~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 5543 33332100 0001101 112356899994367777777777888888764
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.20 E-value=9.4e-05 Score=80.94 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=111.9
Q ss_pred CeEEEEEc-CCC-eEEEEeC-CC----cEEEEeCCCC-ceEE-EeeCccccEEEEEEeCCCCEEEEEcCC-----CcEEE
Q 007306 365 IATYFILL-PQD-LFAFGFD-DS----SILVHCPCTK-KTKA-KLKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCV 430 (608)
Q Consensus 365 ~v~~~~~~-~~~-~l~~~~~-d~----~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~v 430 (608)
.+...+|| ||| .|+.+.. +| .|+++|+.++ +.+. .+. .....++|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 46788999 999 6664433 33 5999999998 6321 111 113467899999988877665 25788
Q ss_pred EECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee---CCcEEEEECCCCc-ee--eeecCCCCCCCeEE
Q 007306 431 WDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH---EGQIDVYEAPTLN-HT--SQLVPDKMDLPITY 503 (608)
Q Consensus 431 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~---d~~i~iwd~~~~~-~~--~~~~~~~~~~~v~~ 503 (608)
+++.++... ... +...... ....++.|+|||++|+. +. ...|+++|+.++. .. ..+.. .......+
T Consensus 252 ~~lgt~~~~---~~l-v~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s 324 (751)
T 2xe4_A 252 HVMGKLQSE---DVC-LYEEHNP--LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYD 324 (751)
T ss_dssp EETTSCGGG---CEE-EEECCCT--TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEE
T ss_pred EECCCCchh---cEE-EEecCCC--ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEE
Confidence 888764311 111 1111110 34568899999999987 32 3468999998752 22 33332 22455566
Q ss_pred EEEecCCCEEEEEEcC----CeEEEEeCCCC-ceeE-EEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEE
Q 007306 504 ATYSCDGKCIYVSCKS----GHVKVFDTSTL-ELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV 577 (608)
Q Consensus 504 ~~~s~~~~~l~sg~~d----g~i~iwd~~~~-~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i 577 (608)
+.|+.++.+++....+ ..|+.+++.++ +... .+. + .....+..+++. ++.++++...||..+|
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~-~--------~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD-H--------SEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC-C--------CSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC-C--------CCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 6655444444444433 36777887753 2222 222 1 112223355554 3456677778886555
Q ss_pred Ee
Q 007306 578 IE 579 (608)
Q Consensus 578 W~ 579 (608)
|-
T Consensus 394 ~~ 395 (751)
T 2xe4_A 394 WT 395 (751)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=0.00095 Score=67.57 Aligned_cols=244 Identities=9% Similarity=-0.035 Sum_probs=140.0
Q ss_pred CeEEEEEe---CCEEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC-C----cEEEEeCCCCc
Q 007306 326 SISCFALR---GSHLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-S----SILVHCPCTKK 395 (608)
Q Consensus 326 ~v~~v~~s---~~~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-~----~i~vwd~~~~~ 395 (608)
....++++ +..|+.+. .+.|+.+|+.++..... .........++|++++ .|+++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 34567777 25677766 58889999887654443 3345567899999999 66666542 1 34444433 32
Q ss_pred eE--EEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 396 TK--AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 396 ~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.. ..+. .......++++| +|.++++-..++.|..+|..+.... .+. ..+.. .....++|+|+|++|++
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---~~~--~~~~~---~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---PLF--TIQDS---GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---EEE--ECSSS---SCCEEEEECTTSSEEEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---EEE--EcCCC---CcceeEEEcCCCCEEEE
Confidence 21 2222 123456788999 7777777777889999999864321 111 11111 24678999999997766
Q ss_pred E--eCCcEEEEECCC--Cce--eeeecCC----C---------CCCCeE-EEEEe--------cCCCEEEEEEcCCeEEE
Q 007306 473 I--HEGQIDVYEAPT--LNH--TSQLVPD----K---------MDLPIT-YATYS--------CDGKCIYVSCKSGHVKV 524 (608)
Q Consensus 473 ~--~d~~i~iwd~~~--~~~--~~~~~~~----~---------~~~~v~-~~~~s--------~~~~~l~sg~~dg~i~i 524 (608)
+ ..+.|..++... +.. +..+... + .-.... .++.. ++|.+.++-...+.|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567899987642 221 1222110 0 011223 45553 34555666566788999
Q ss_pred EeCCCCceeEEEeceeeccCCCcc-------cccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 525 FDTSTLELRCQINLTAYAQPGTIS-------LELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 525 wd~~~~~~~~~~~~~~~~~~g~~~-------~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
++ .+|..............|..+ .-.++..++++|+++.++++-...+.|+.++++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 88 456433322110000001001 112366899999446666666677888887764
No 283
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.14 E-value=0.00041 Score=75.89 Aligned_cols=237 Identities=7% Similarity=0.018 Sum_probs=127.6
Q ss_pred cEEEEEEe-eCCCEEEEEeC-CC----cEEEEecCCC-cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe
Q 007306 261 RVVRLIYS-HSGDFLVALTQ-TA----THKLWKWQSN-KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR 333 (608)
Q Consensus 261 ~V~~~~fs-p~g~~l~s~s~-dg----~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 333 (608)
.+...+|| |||++||.+.. +| +|.++|+.++ +. +...+ ......++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~---------------------l~~~~----~~~~~~~~Ws 229 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT---------------------IADKV----SGTNGEIVWG 229 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC---------------------CCCCE----EEECSCCEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe---------------------CCccc----cCceeeEEEe
Confidence 68889999 99998886554 33 3777776655 32 10000 0112356788
Q ss_pred --CCEEEEEe-C-----CcEEEEEcCCCce--eeEec-CCCCCeEEEEEcCCC-eEEEEeC---CCcEEEEeCCCC--ce
Q 007306 334 --GSHLFSAS-G-----GKISIFSLETFQT--LATFA-NPPPIATYFILLPQD-LFAFGFD---DSSILVHCPCTK--KT 396 (608)
Q Consensus 334 --~~~l~s~~-d-----~~i~vwd~~~~~~--~~~~~-~~~~~v~~~~~~~~~-~l~~~~~---d~~i~vwd~~~~--~~ 396 (608)
++.|+... + ..|.++++.++.. ...+. ........+.|+||| .|+..+. ...|+++|+.++ ..
T Consensus 230 pDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 230 PDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp SSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred cCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc
Confidence 66666666 5 2588888877642 23333 223345678999999 6665442 347888999875 23
Q ss_pred --EEEeeCccccEEEEEEeCCCCEEEEEcCC----CcEEEEECCCCceecccc-eeeeeccCCCCccceEEEEEcCCCCE
Q 007306 397 --KAKLKGHQNRITCLAYSLSLNVLVSSGAD----AQLCVWDAVGWKKLCSKF-LHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 397 --~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
............++.|+.++.+++....+ ..|..+|+.++. .... + +..... ..+..+.+. +..
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~--~~~~~l--i~~~~~---~~l~~~~~~--~~~ 380 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS--DWSHVL--VDHSED---VFMESIAVR--SNY 380 (751)
T ss_dssp CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT--CCCCEE--ECCCSS---EEEEEEEEC--SSE
T ss_pred eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc--cceeeE--ECCCCC---cEEEEEEEE--CCE
Confidence 22223344455666665544444554443 356667765421 0111 1 111111 244555554 455
Q ss_pred EEE-E-eCCc--EEEEEC-------CCCceeeeecCCCCCCCeEEEEE----ecCCC-EEEEEEcC---CeEEEEeCCCC
Q 007306 470 LLS-I-HEGQ--IDVYEA-------PTLNHTSQLVPDKMDLPITYATY----SCDGK-CIYVSCKS---GHVKVFDTSTL 530 (608)
Q Consensus 470 l~~-~-~d~~--i~iwd~-------~~~~~~~~~~~~~~~~~v~~~~~----s~~~~-~l~sg~~d---g~i~iwd~~~~ 530 (608)
|+. . .++. |+++|+ .+++....+.... ...+..+.+ ++++. ++++.+.. ..++.+|+.++
T Consensus 381 lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~-~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 381 LVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEE-PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp EEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCC-SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred EEEEEEeCCEEEEEEEecccccccccCCccceEECCCC-ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 555 3 5664 666775 3443134443221 223334433 34655 44444433 57888898877
Q ss_pred ce
Q 007306 531 EL 532 (608)
Q Consensus 531 ~~ 532 (608)
+.
T Consensus 460 ~~ 461 (751)
T 2xe4_A 460 SR 461 (751)
T ss_dssp CE
T ss_pred cE
Confidence 64
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.11 E-value=0.0047 Score=67.18 Aligned_cols=202 Identities=7% Similarity=-0.052 Sum_probs=125.8
Q ss_pred CCCeEEEEEe--CCEEEEEe--CCcEEEEEcCCC----ceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC
Q 007306 324 KDSISCFALR--GSHLFSAS--GGKISIFSLETF----QTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT 393 (608)
Q Consensus 324 ~~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~ 393 (608)
...+..++|. +..|+... .+.|+.+++... .....+.........+++.+.+ ++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4567788888 56666555 678988888752 2233333344456688998777 555666678999999986
Q ss_pred CceEEEeeCccccEEEEEEeCCCCEEEEEcC-C-CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE
Q 007306 394 KKTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 394 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 471 (608)
......+.........|+++|.+..|..+.. + +.|...++.... ...+..... .....|++++.+..|+
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~~~l---~~P~GLavD~~~~~LY 573 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENI---QWPNGITLDLLSGRLY 573 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSC---SCEEEEEEETTTTEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc------eEEEEeCCC---CCceEEEEecCCCeEE
Confidence 5544444444456889999997655555543 3 678888887622 111222222 3678999998877777
Q ss_pred EE--eCCcEEEEECCCCceeeeecC-CCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEeCCCCceeEEEe
Q 007306 472 SI--HEGQIDVYEAPTLNHTSQLVP-DKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 472 ~~--~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+ ..+.|..+++. |.....+.. ...-.....+++. +..|+.. ...+.|...+..+|+.+..+.
T Consensus 574 waD~~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 574 WVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEeCCCCcEEEEecC-CCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 74 55789999985 443333322 1123345566664 3355544 455889888887776655553
No 285
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.11 E-value=0.0082 Score=58.16 Aligned_cols=272 Identities=7% Similarity=-0.038 Sum_probs=140.9
Q ss_pred eEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcce
Q 007306 215 ESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQS 294 (608)
Q Consensus 215 ~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~ 294 (608)
.+.+.+++..++ ++.+|.|. ...+.+ .......+........+.++.|++ +. ++.++..+.|. ....+..
T Consensus 40 ~v~~~~~~~~~~-~G~~g~i~-~s~DgG---~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~--~S~DgG~- 109 (327)
T 2xbg_A 40 DMSFIDRHHGWL-VGVNATLM-ETRDGG---QTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIML--HTTDGGQ- 109 (327)
T ss_dssp EEEESSSSCEEE-EETTTEEE-EESSTT---SSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEE--EESSTTS-
T ss_pred EEEECCCCcEEE-EcCCCeEE-EeCCCC---CCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEE--EECCCCC-
Confidence 345666666666 45566552 222221 112221111111245789999986 44 44455566443 2222111
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCceeeEe-cCCCCCeEEEEE
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSAS-GGKISIFSLETFQTLATF-ANPPPIATYFIL 371 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~ 371 (608)
-|..... ...+...+..+.+. +..++.++ ++.|.. ..+.|+.-... .+....+..+.+
T Consensus 110 -----------tW~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 110 -----------SWSQIPL-------DPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp -----------SCEECCC-------CTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred -----------CceECcc-------ccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence 2221110 00123446777776 44444444 665422 22224332222 345567889999
Q ss_pred cCCC-eEEEEeCCCcEEE-EeC--CCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeee
Q 007306 372 LPQD-LFAFGFDDSSILV-HCP--CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSF 447 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~v-wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 447 (608)
.+++ .++++. +|.+.. .|- .+-+.+. ......+..+.+.+++..++. +.+|.+++.+.+.++. ...+. .
T Consensus 171 ~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t--W~~~~-~ 243 (327)
T 2xbg_A 171 SPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN--WGELL-S 243 (327)
T ss_dssp CTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE--ECCCB-C
T ss_pred cCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe--eEecc-C
Confidence 9988 665554 455444 342 1222221 234567889999999876654 4578877764332111 11111 1
Q ss_pred e-ccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 448 Q-TGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 448 ~-~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
. .... ..+.++.+.+++..++++.++.+ .+..+.|+.-..+... .....+.++.|.+++. +++++.+|.|.-+
T Consensus 244 ~~~~~~---~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~ 318 (327)
T 2xbg_A 244 PLRRNS---VGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRY 318 (327)
T ss_dssp TTSSCC---SCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEE
T ss_pred CcccCC---cceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEE
Confidence 1 0011 35789999998888888888877 4555555443333211 1235678888886665 5566678887766
Q ss_pred eC
Q 007306 526 DT 527 (608)
Q Consensus 526 d~ 527 (608)
+-
T Consensus 319 ~~ 320 (327)
T 2xbg_A 319 VT 320 (327)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 286
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.09 E-value=0.0038 Score=60.22 Aligned_cols=200 Identities=8% Similarity=-0.074 Sum_probs=126.3
Q ss_pred CeEEEEEe--CCEEEEEe--CCcEEEEEcCCCcee-eEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 007306 326 SISCFALR--GSHLFSAS--GGKISIFSLETFQTL-ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 326 ~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
...+++|. ++.|+.+. .+.|..+++..+... ..+...-.....+++.+.+ ++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 35578888 55666555 688999998765322 2222222345578888755 55565667899999987544333
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEc--CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 474 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~ 474 (608)
...........++++|.+..|..+. ..+.|...++.... ...+..... ...+.++++|++..|+.+ .
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~l---~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIINSEI---YWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS------CEEEECSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC------eEEEEECCC---CCccEEEEeccCCEEEEEECC
Confidence 3334445678999999765555554 25788888876521 111111111 356799999987777764 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+.|..+|+. |...+.+.. ........+++.. +..+.+-...+.|..++..+|+....+.
T Consensus 187 ~~~I~~~d~d-G~~~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 187 LNFIHKSNLD-GTNRQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTEEEEEETT-SCSCEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCC-CCceEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 6789999985 333333332 1245667788753 3444455566899999998887766654
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.07 E-value=0.0052 Score=66.82 Aligned_cols=229 Identities=10% Similarity=-0.035 Sum_probs=141.2
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC----ceEEEeeCccccE
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK----KTKAKLKGHQNRI 407 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v 407 (608)
..+|+.+....|+..++.......... ....+..++|++.+ ++++-...+.|+.+++... .....+.......
T Consensus 395 ~p~Ll~an~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 395 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp CCEEEEECBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccccccccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 345555566778888887655444433 34566789999855 5556566778999998753 2233333234556
Q ss_pred EEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e-CCcEEEEEC
Q 007306 408 TCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEA 483 (608)
Q Consensus 408 ~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~-d~~i~iwd~ 483 (608)
..|++.+.+. ++++-...+.|.+.++.... ...+..... .....|+++|.+..|+.+ . .+.|...++
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------~~~l~~~~l---~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFRENG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSS------EEEEEECTT---CCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCe------EEEEEeCCC---CCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 7899998764 45555667899999988632 121222222 357899999987666664 2 367999998
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLE 562 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d 562 (608)
. |.....+... .-.....|++++.+..|+.+.. .+.|...++........+... ....+..+++...
T Consensus 545 d-G~~~~~lv~~-~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~--------~~l~~P~glav~~-- 612 (791)
T 3m0c_C 545 N-GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE--------KRLAHPFSLAVFE-- 612 (791)
T ss_dssp T-SCCEEEEECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT--------TTTSSEEEEEEET--
T ss_pred C-CCceEEEEeC-CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC--------CccCCCCEEEEeC--
Confidence 5 4444444332 2467889999987777776644 578999998765544333211 1111233666644
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc
Q 007306 563 PNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~~~~ 584 (608)
+.++++-...+.|...+..+++
T Consensus 613 ~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 613 DKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp TEEEEEETTTTEEEEEETTTCC
T ss_pred CEEEEEECCCCEEEEEeCCCCc
Confidence 3455555566778777766654
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.05 E-value=0.0018 Score=62.08 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=123.9
Q ss_pred EEEEEe-CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCC----C-e--EEEEe--C--CCcEEEEeC--CCCceEEEee
Q 007306 336 HLFSAS-GGKISIFSLETFQTLATFANPPPIATYFILLPQ----D-L--FAFGF--D--DSSILVHCP--CTKKTKAKLK 401 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~-~--l~~~~--~--d~~i~vwd~--~~~~~~~~~~ 401 (608)
.++... .+-+.+||+ +|+.++.+.. +.+..+..-|+ | . ++.++ . +++|.+|++ .++. +..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 444444 788999999 7999888853 55666666552 2 1 33333 3 578999966 4443 44342
Q ss_pred C------cc-ccEEEEEE--eCC-CC-EEEEEcCCCcEEEEECCCC-c-eecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 402 G------HQ-NRITCLAY--SLS-LN-VLVSSGADAQLCVWDAVGW-K-KLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 402 ~------~~-~~v~~~~~--~~~-~~-~l~s~~~d~~i~vwd~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
. .. ..+..+++ +|. +. ++++...+|.+..|++... . ....+.++++..+ +.+..+...+...
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-----sq~EgcvvDd~~g 192 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-----SQTEGMAADDEYG 192 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-----SCEEEEEEETTTT
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-----CCcceEEEcCCCC
Confidence 1 11 44556676 664 44 5778888999999998431 1 1233455544443 4678899999888
Q ss_pred EEEEE-eCCcEEEEECC-----CCceeeeecCCCCCCCeEEEEE--ecCCC-EEEEEE-cCCeEEEEeCC-CCceeEEEe
Q 007306 469 HLLSI-HEGQIDVYEAP-----TLNHTSQLVPDKMDLPITYATY--SCDGK-CIYVSC-KSGHVKVFDTS-TLELRCQIN 537 (608)
Q Consensus 469 ~l~~~-~d~~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~sg~-~dg~i~iwd~~-~~~~~~~~~ 537 (608)
.|+++ .+..|..++.+ +++.+..+....-...+..+++ .++++ ||++++ .++...+||.. +.+.+..+.
T Consensus 193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 88887 55557777754 3455555432222457888888 45666 677766 56899999997 677777775
No 289
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.01 E-value=0.0031 Score=63.77 Aligned_cols=241 Identities=10% Similarity=0.034 Sum_probs=129.9
Q ss_pred CcEEEEEEeeC--CCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CC
Q 007306 260 GRVVRLIYSHS--GDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GS 335 (608)
Q Consensus 260 ~~V~~~~fsp~--g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 335 (608)
.....++|+|+ +..|+.+...+.|+.++..+ +.+.... ........++++ ++
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~---------------------g~v~~~~---~~~~~P~giavd~dG~ 194 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN---------------------QYVDIKT---TNIGQCADVNFTLNGD 194 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTT---------------------TEEEEEC---CCCSCEEEEEECTTCC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCC---------------------CEEEEee---cCCCCccEEEECCCCC
Confidence 34668888884 33455554446666555433 3332221 233457889999 66
Q ss_pred EEEEEe-CC----c-EEEEEcCCCce-eeEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEe-eC-cc
Q 007306 336 HLFSAS-GG----K-ISIFSLETFQT-LATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKL-KG-HQ 404 (608)
Q Consensus 336 ~l~s~~-d~----~-i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~-~~-~~ 404 (608)
|+.+. .+ . +...+...+.. ...+. .......++++| ++ ++++-..++.|+.+|..++.....+ .. ..
T Consensus 195 -lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 195 -MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp -EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred -EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 44444 22 1 33333222111 01111 123345678999 56 5555556788999999877663322 21 12
Q ss_pred ccEEEEEEeCCCCE-EEEEcCCCcEEEEECCC--Cceecccceeee--eccCC------CCccceEEEEE---------c
Q 007306 405 NRITCLAYSLSLNV-LVSSGADAQLCVWDAVG--WKKLCSKFLHSF--QTGLV------PETTIVNHIQF---------H 464 (608)
Q Consensus 405 ~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~--~~~~~~~~~~~~--~~~~~------~~~~~v~~v~~---------s 464 (608)
..-..++|+|+++. +++-...+.|+.++... +.......+... ..+.. ..-.....+++ .
T Consensus 273 ~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd 352 (433)
T 4hw6_A 273 GSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE 352 (433)
T ss_dssp SSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred CCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC
Confidence 22346999999984 45555678899988753 111000000000 00000 00023567999 6
Q ss_pred CCCCEEEE-EeCCcEEEEECCCCceeeeecCCCC----------------CCCeEEEEEe-cCCCEEEEEEcCCeEEEEe
Q 007306 465 PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKM----------------DLPITYATYS-CDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 465 p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~sg~~dg~i~iwd 526 (608)
++|.+.++ ...+.|+.++. +|.. .++..... -.....++++ ++|.++++-..++.|+.++
T Consensus 353 ~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 353 DEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp CCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 77766666 36678999985 5643 33322110 1346788998 5666655555667787776
Q ss_pred CC
Q 007306 527 TS 528 (608)
Q Consensus 527 ~~ 528 (608)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.01 E-value=0.013 Score=62.19 Aligned_cols=225 Identities=10% Similarity=-0.025 Sum_probs=143.0
Q ss_pred EEEEEeCCcEEEEEcCCCceeeEec-CCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEE
Q 007306 336 HLFSASGGKISIFSLETFQTLATFA-NPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAY 412 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 412 (608)
+|+.+....|+..++.+......+. ..-..+..++|++.+ .+++-..++.|..+++........+.........+++
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 4555567889999998655433332 123457799999876 5556667789999998765444334333345778999
Q ss_pred eCCCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE---eCCcEEEEECCCCce
Q 007306 413 SLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNH 488 (608)
Q Consensus 413 ~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~---~d~~i~iwd~~~~~~ 488 (608)
.+.+. +.++-...+.|.+.++.... ...+..... .....++++|....|+.+ ..+.|...++. |..
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~------~~~l~~~~l---~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d-G~~ 157 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQH------RQVLVWKDL---DSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSE 157 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTT------CEEEECSSC---CCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCS
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCc------EEEEEeCCC---CCcccEEEccCCCeEEEeCCCCCCEEEEEeCC-CCc
Confidence 87655 45555567889999987632 111221221 356899999966666654 25678888885 433
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 567 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 567 (608)
...+.. .......++++++++.|+.+.. .+.|...++..... ..+... . . ...++++.. +.+++
T Consensus 158 ~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-----l--~---~P~glav~~--~~ly~ 222 (628)
T 4a0p_A 158 RTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-----L--P---HPFGLTQYQ--DYIYW 222 (628)
T ss_dssp CEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-----C--S---CEEEEEEET--TEEEE
T ss_pred eEEEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-----C--C---CceEEEEEC--CEEEE
Confidence 334332 2567889999998777776654 57899999976544 333211 0 1 133677755 35555
Q ss_pred EEeCCCcEEEEeCCCCcc
Q 007306 568 LGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 568 s~s~Dg~v~iW~~~~~~~ 585 (608)
+-...+.|...|..+++.
T Consensus 223 tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 223 TDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EETTTTEEEEEETTTCCS
T ss_pred ecCCCCEEEEEECCCCCc
Confidence 655678888888777653
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0038 Score=63.07 Aligned_cols=240 Identities=8% Similarity=-0.020 Sum_probs=130.2
Q ss_pred cEEEEEEee-CCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEE
Q 007306 261 RVVRLIYSH-SGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHL 337 (608)
Q Consensus 261 ~V~~~~fsp-~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l 337 (608)
....++++| ++..|+.+...+.|..+|..++. +.... ........++|+ ++.|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~---------------------v~~~~---~~~~~P~~ia~d~~G~~l 193 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY---------------------VSTVY---SGLSKVRTICWTHEADSM 193 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE---------------------EEEEE---CCCSCEEEEEECTTSSEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE---------------------EEEEe---cCCCCcceEEEeCCCCEE
Confidence 557788997 45556666555666655554432 22111 133457789998 7756
Q ss_pred EEEe--CC----cEEEEEcCCCcee--eEecCCCCCeEEEEEcC-CC-eEEEEeCCCcEEEEeCCCCceEEEeeC-cccc
Q 007306 338 FSAS--GG----KISIFSLETFQTL--ATFANPPPIATYFILLP-QD-LFAFGFDDSSILVHCPCTKKTKAKLKG-HQNR 406 (608)
Q Consensus 338 ~s~~--d~----~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~ 406 (608)
+.+. ++ .+.+.+ ..+... ..+.. ......++++| ++ ++++-..++.|..++..++........ ....
T Consensus 194 yvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 194 IITNDQNNNDRPNNYILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp EEEECCSCTTSEEEEEEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred EEEeCCCCcccceEEEEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 6655 22 233333 333222 22221 22345788999 56 556666778999999987654322221 2235
Q ss_pred EEEEEEeCCCCE-EEEEcCCCcEEEEECCCC--ceecccceeee--eccCCC------CccceE-EEEEc--------CC
Q 007306 407 ITCLAYSLSLNV-LVSSGADAQLCVWDAVGW--KKLCSKFLHSF--QTGLVP------ETTIVN-HIQFH--------PD 466 (608)
Q Consensus 407 v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~--~~~~~~------~~~~v~-~v~~s--------p~ 466 (608)
...++|+|+|++ +++-...+.|..++.... .......+... ..+... .-.... .++.. ++
T Consensus 272 P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~ 351 (430)
T 3tc9_A 272 EFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDE 351 (430)
T ss_dssp CEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCC
T ss_pred ceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCC
Confidence 778999999994 555556788999887642 11000000000 000000 001223 45553 34
Q ss_pred CCEEEE-EeCCcEEEEECCCCceeeeecCC------C----------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEeCC
Q 007306 467 QIHLLS-IHEGQIDVYEAPTLNHTSQLVPD------K----------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTS 528 (608)
Q Consensus 467 ~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------~----------~~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~ 528 (608)
|.+.++ ...+.|+.++. +|... ++... + .-.....++++|+ +.++++-..++.|+.++++
T Consensus 352 g~lyvaD~~n~~I~~i~~-~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 352 YDFYFCDRENHCIRILTP-QGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEEEGGGTEEEEECT-TSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CeEEEEECCCcEEEEECC-CCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 555555 35678999984 56433 22211 0 0125788999995 5555555556778877654
No 292
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.97 E-value=0.044 Score=62.35 Aligned_cols=328 Identities=9% Similarity=-0.023 Sum_probs=178.1
Q ss_pred CCeEEEeec-CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEee--CCCEEEEEeCCCcEEEEecCC--Ccceee
Q 007306 222 ADSAVCAKS-LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSH--SGDFLVALTQTATHKLWKWQS--NKQSLE 296 (608)
Q Consensus 222 g~~l~~~~~-d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp--~g~~l~s~s~dg~i~iw~~~~--~~~~~~ 296 (608)
+++++.|.. |++|+|+++.+ -..+....|++ .....++.+.. ...+|..|-.||.+.-+.+.. +...-.
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~---l~~~~~~~L~~---~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~ 644 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPS---FELLHKEMLGG---EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 644 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTT---CCEEEEEECCS---SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE
T ss_pred ccEEEEEECCCCEEEEEECCC---CCeEEEEECCC---CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc
Confidence 468999996 99999999974 22222223432 22344444432 345888999999887666543 222111
Q ss_pred ----ecccceeeEEeeCC------------------CCeeeeccccCCCCCCe-EEEEEe----CCEEEEEeCCcEEEEE
Q 007306 297 ----EENVNMESQLYQPS------------------SKLVMTNDIAADPKDSI-SCFALR----GSHLFSASGGKISIFS 349 (608)
Q Consensus 297 ----~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~v-~~v~~s----~~~l~s~~d~~i~vwd 349 (608)
..+.......+... .+.+.-.-+ .-..+ ....|+ .+-++..+++.++|..
T Consensus 645 r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~ 721 (1158)
T 3ei3_A 645 KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALANNSTLTIGT 721 (1158)
T ss_dssp EEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEECSSCEEEEE
T ss_pred eeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEcCCceEEEE
Confidence 01111111111111 111110000 11122 233455 3456655566788888
Q ss_pred cCCCce--eeEecCCCCCeEEEEEcCCC-eEEEEeC--------------------------------------------
Q 007306 350 LETFQT--LATFANPPPIATYFILLPQD-LFAFGFD-------------------------------------------- 382 (608)
Q Consensus 350 ~~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~-------------------------------------------- 382 (608)
+.+.+. ++++ .-...+..++++|+. .++++..
T Consensus 722 i~~~~~~~~~~i-pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 722 IDEIQKLHIRTV-PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp ECCSSSEEEEEE-ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred ecccCCeeEEEE-eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 754322 2222 233566788888876 4333221
Q ss_pred -----CCcEEEEeCCCCceEEEeeC-ccccEEEEEE---eC-CCCEEEEEc----------CCCcEEEEECCCCceeccc
Q 007306 383 -----DSSILVHCPCTKKTKAKLKG-HQNRITCLAY---SL-SLNVLVSSG----------ADAQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 383 -----d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~-~~~~l~s~~----------~d~~i~vwd~~~~~~~~~~ 442 (608)
-+.|++.|..+.+.+..+.- ....+.+++. .. ...++++|+ ..|.|.+|++...+ .+
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k---L~ 877 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK---LQ 877 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE---EE
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE---EE
Confidence 12467778777776655543 2234555543 22 246788776 34789999987422 11
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeE
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHV 522 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i 522 (608)
.+... ... +++++++--. | +|+++....+++|++...+.++ .... +...+..+.....+++++.|..-..|
T Consensus 878 lv~~~--~v~---g~v~al~~~~-g-~Lla~ig~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv 948 (1158)
T 3ei3_A 878 TVAEK--EVK---GAVYSMVEFN-G-KLLASINSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGDFILVGDLMRSV 948 (1158)
T ss_dssp EEEEE--EES---SCEEEEEEET-T-EEEEEETTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETTEEEEEESSBCE
T ss_pred EEEEE--EcC---CcCEEEeeeC-C-EEEEEcCCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCCEEEEEEhhheE
Confidence 22211 112 6788877443 4 7777888999999997655443 1111 11123333444467899999877767
Q ss_pred EEEe--CCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 523 KVFD--TSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 523 ~iwd--~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
.++. ...+++...-. ...+.+++++.+-. + ..++.+..+|.+.+.....
T Consensus 949 ~~~~y~~~~~~L~~~a~---------D~~~~~vta~~~ld-~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 949 LLLAYKPMEGNFEEIAR---------DFNPNWMSAVEILD-D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEETTTTEEEEEEE---------CCSCBCEEEEEEEE-T-TEEEEEETTSEEEEEEECT
T ss_pred EEEEEEcCCCeEEEEEe---------ecccccEEEEEEEc-c-CcEEEEcCCCcEEEEecCC
Confidence 6654 44444332221 13446677888876 3 5788899999999987754
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.89 E-value=9.1e-05 Score=79.97 Aligned_cols=202 Identities=9% Similarity=-0.030 Sum_probs=118.8
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCC----CceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCC
Q 007306 325 DSISCFALR--GSHLFSAS--GGKISIFSLET----FQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTK 394 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~ 394 (608)
..+..++|. ++.|+.+. .+.|+.+++.. ......+.........+++.+.+ ++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678888 56666665 68899999875 22222222222234567887554 5555556789999998765
Q ss_pred ceEEEeeCccccEEEEEEeCCCCEEEEEcC-C-CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 395 KTKAKLKGHQNRITCLAYSLSLNVLVSSGA-D-AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 395 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.....+.........++++|.+.+|+.+.. . +.|.++++.... ...+..... ...+.|+|+|++..|+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~------~~~l~~~~l---~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENI---QWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC------CCEESCSSC---SSCCCEEECTTTCCEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC------eeEEEeCCC---CCccEEEEeccCCEEEE
Confidence 443333323345678899986555544432 2 678887776421 110111111 24568999998776666
Q ss_pred E--eCCcEEEEECCCCceeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 473 I--HEGQIDVYEAPTLNHTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 473 ~--~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
+ ..+.|..+++.. ...+.+... ........+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 557 aD~~~~~I~~~d~dG-~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 557 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EETTTTEEEEECSSS-SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EecCCCeEEEEccCC-CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 4 567899999854 333333221 11233445566544 344444556899999998888776664
No 294
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.006 Score=58.47 Aligned_cols=183 Identities=9% Similarity=0.068 Sum_probs=114.8
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC----CC---E-EEEEcC--CCcEEEEECCCCceeccccee
Q 007306 376 LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS----LN---V-LVSSGA--DAQLCVWDAVGWKKLCSKFLH 445 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~-l~s~~~--d~~i~vwd~~~~~~~~~~~~~ 445 (608)
.++.....+.+.+||+ +|+.++.+.. +.++.+..-|+ |+ + +++.-. +++|.+|++.... ..+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~----~~l~ 114 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN----GTLQ 114 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT----CCEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC----Ccee
Confidence 5666667789999999 7888888764 56777766652 32 2 233333 5789999774211 1122
Q ss_pred ee-----e--ccCCCCccceEEEEE--cCC-CC-EEEE-EeCCcEEEEECC-------CCceeeeecCCCCCCCeEEEEE
Q 007306 446 SF-----Q--TGLVPETTIVNHIQF--HPD-QI-HLLS-IHEGQIDVYEAP-------TLNHTSQLVPDKMDLPITYATY 506 (608)
Q Consensus 446 ~~-----~--~~~~~~~~~v~~v~~--sp~-~~-~l~~-~~d~~i~iwd~~-------~~~~~~~~~~~~~~~~v~~~~~ 506 (608)
.+ + ... ..+..+++ +|. ++ ++++ ..++.+..|++. +.+.++++.. ...+-.+..
T Consensus 115 ~i~~~~~pv~t~~----~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egcvv 187 (355)
T 3amr_A 115 SMTDPDHPIATAI----NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAA 187 (355)
T ss_dssp ECSCTTSCEECCC----SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEE
T ss_pred eccccccCcCCCC----CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEE
Confidence 11 0 110 23556777 774 54 4555 478999998872 3467788865 457889999
Q ss_pred ecCCCEEEEEEcCCeEEEEeCC-----CCceeEEEeceeeccCCCcccccccEEEEE--ecCCCC-EEEEEe-CCCcEEE
Q 007306 507 SCDGKCIYVSCKSGHVKVFDTS-----TLELRCQINLTAYAQPGTISLELYPLVIAA--HPLEPN-RIALGL-TNGRVHV 577 (608)
Q Consensus 507 s~~~~~l~sg~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~--sp~d~~-~las~s-~Dg~v~i 577 (608)
.+....|+.+-++.-|..++.+ +++.+..+.. ++-...+. .++. .+ ++. +|++++ .+.++.+
T Consensus 188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~------g~l~aDvE--GLai~~~~-~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG------RHLTRDIE--GLTIYYAA-DGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS------SSBCSCEE--EEEEEECG-GGCEEEEEEEGGGTEEEE
T ss_pred cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC------CccccCcc--eEEEEecC-CCCEEEEEEcCCCCEEEE
Confidence 9999999999999777777754 2334433311 22222344 5555 45 444 555555 6779999
Q ss_pred EeCC
Q 007306 578 IEPL 581 (608)
Q Consensus 578 W~~~ 581 (608)
|+..
T Consensus 259 ydr~ 262 (355)
T 3amr_A 259 YDRQ 262 (355)
T ss_dssp EESS
T ss_pred EECC
Confidence 9996
No 295
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=97.79 E-value=1e-05 Score=58.87 Aligned_cols=67 Identities=13% Similarity=0.315 Sum_probs=56.2
Q ss_pred cceecchhhhhHHHHHHHHHhhhcHHHHHHHHHhhcCcccc--HHHHHHHHhcCCHHHHHHHHhhcccC
Q 007306 5 KMCIDKDTYTHLITLIMKFLEEENFKESLQALEQESKIFFN--VHRFGEIVMNGEWEKAEKYLSAFTKL 71 (608)
Q Consensus 5 ~~~~~~~~~~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~G~w~~~~~~l~~~~~~ 71 (608)
+|.++..|..|+-+-|++||..+||.+++.+|.+|.++..+ ...-.+.+++-+|.-++++-++++.+
T Consensus 2 ~miLt~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKImdL 70 (88)
T 1uuj_A 2 AMVLSQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMEL 70 (88)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 57888888899999999999999999999999999998874 23356788999999999998887443
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=0.023 Score=57.63 Aligned_cols=254 Identities=9% Similarity=-0.085 Sum_probs=145.8
Q ss_pred CeEEEEEe---CCEEEEEe--CCcEEEEEcCCCceeeEecCC---CCCeEEEEE-------cCCC-eEEEEeCCC-----
Q 007306 326 SISCFALR---GSHLFSAS--GGKISIFSLETFQTLATFANP---PPIATYFIL-------LPQD-LFAFGFDDS----- 384 (608)
Q Consensus 326 ~v~~v~~s---~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~-~l~~~~~d~----- 384 (608)
....|+|. +..|+.+. .+.|++.|++++......... ......++| ++++ .++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 45677887 24555555 367899998877666554432 235789999 9999 666665543
Q ss_pred --cEEEEeCCC-CceE-----EEeeCccccEEEEEEeC-CCCEEEEEcCCCcEEEEECC-------CCce-ecccc----
Q 007306 385 --SILVHCPCT-KKTK-----AKLKGHQNRITCLAYSL-SLNVLVSSGADAQLCVWDAV-------GWKK-LCSKF---- 443 (608)
Q Consensus 385 --~i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~~-------~~~~-~~~~~---- 443 (608)
.|.+++... +... ..+... .....++++| ++.++++-..++.|..+|+. ++.. ....+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776444 2221 122211 2345678899 56666677778889999987 4332 00000
Q ss_pred -eeeee-ccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECC--CCcee--eeecCC----CC---------CCCeE
Q 007306 444 -LHSFQ-TGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAP--TLNHT--SQLVPD----KM---------DLPIT 502 (608)
Q Consensus 444 -~~~~~-~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~--~~~~~--~~~~~~----~~---------~~~v~ 502 (608)
+..+. .+.. .....++|+|+|+.|+++ ..+.|+.++.. ++... ..+.+. +. -....
T Consensus 299 ~~~~l~~~~~~---~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 299 TFKQLFTIADP---SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TEEEEEECSSS---SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccceeEecCCC---CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 11111 1111 346799999999976664 56788886643 33211 122111 00 12234
Q ss_pred -EEEEe-------cCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeec-------cCCCccc-------ccccEEEEEec
Q 007306 503 -YATYS-------CDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYA-------QPGTISL-------ELYPLVIAAHP 560 (608)
Q Consensus 503 -~~~~s-------~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~g~~~~-------~v~~~~v~~sp 560 (608)
.++.. ++|.++++=..++.|+.++ .+|. +.++...... ..|..++ --.+..+++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 44554 4566666666778999998 4564 4444432100 0011111 12356899999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcc
Q 007306 561 LEPNRIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~~~~~ 585 (608)
+++.++++=+....||.+++.....
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC-
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcc
Confidence 3377777777788999999877554
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.75 E-value=9.8e-05 Score=79.74 Aligned_cols=228 Identities=11% Similarity=-0.024 Sum_probs=130.2
Q ss_pred EEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEE-EEeCCCcEEEEeCCC----CceEEEeeCccccEEE
Q 007306 336 HLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD-LFA-FGFDDSSILVHCPCT----KKTKAKLKGHQNRITC 409 (608)
Q Consensus 336 ~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~ 409 (608)
+|+.+..+.|+..++.+.+....+.. ...+..++|++.+ .|+ +-...+.|+.+++.+ ......+.........
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g 457 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 457 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred eEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence 34444456788888876655444433 3345678999866 544 444567899999875 2222222212223456
Q ss_pred EEEeCC-CCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e-CCcEEEEECCC
Q 007306 410 LAYSLS-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H-EGQIDVYEAPT 485 (608)
Q Consensus 410 ~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~-d~~i~iwd~~~ 485 (608)
+++.+. ++++++-...+.|.++++.... ...+..... .....++++|.+.+|+.+ . .+.|..+++.
T Consensus 458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~------~~~l~~~~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~d- 527 (699)
T 1n7d_A 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVK------RKTLFREQG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN- 527 (699)
T ss_dssp EECCCSSSBCEECCTTTSCEEEEBSSSCC------EEEECCCSS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSS-
T ss_pred EEEEeeCCcEEEEeccCCeEEEEecCCCc------eEEEEeCCC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCC-
Confidence 788754 4555555567889999987632 111221111 245678999976666653 2 3678888874
Q ss_pred CceeeeecCCCCCCCeEEEEEecCCCEEEEE-EcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCC
Q 007306 486 LNHTSQLVPDKMDLPITYATYSCDGKCIYVS-CKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPN 564 (608)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~ 564 (608)
+.....+... .......++|+|++..|+.+ +..+.|..+++........+... + ...+...+++.. ..
T Consensus 528 G~~~~~l~~~-~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~---~~~~P~glavd~--~~ 596 (699)
T 1n7d_A 528 GVDIYSLVTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----K---RLAHPFSLAVFE--DK 596 (699)
T ss_dssp SCCCCEESCS-SCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-----S---SCSSCCCCEEET--TE
T ss_pred CCCeeEEEeC-CCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-----C---cCCCceEeEEEC--CE
Confidence 3333333221 13456689999986666554 45678999999754433222211 0 001122555555 35
Q ss_pred EEEEEeCCCcEEEEeCCCCcc
Q 007306 565 RIALGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 565 ~las~s~Dg~v~iW~~~~~~~ 585 (608)
++++....+.|..++..+++.
T Consensus 597 lywtd~~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 597 VFWTDIINEAIFSANRLTGSD 617 (699)
T ss_dssp EEEECSTTTCEEEEETTTEEE
T ss_pred EEEEeCCCCeEEEEEccCCCc
Confidence 666666678999999876654
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.73 E-value=0.069 Score=56.58 Aligned_cols=199 Identities=9% Similarity=-0.053 Sum_probs=127.1
Q ss_pred CCeEEEEEe--CCEEEEEe--CCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEE
Q 007306 325 DSISCFALR--GSHLFSAS--GGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKA 398 (608)
Q Consensus 325 ~~v~~v~~s--~~~l~s~~--d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~ 398 (608)
..+..++|. ++.|+.+. ++.|..+++........+.........+++.+.+ ++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 457788998 56666665 6899999987554444443333456688888765 55555667889999987554333
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEc--CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE--e
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSG--ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--H 474 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~ 474 (608)
.+...-.....++++|....|.... ..+.|...++.... ...+..+- .....+++++++..|+.+ .
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~------~~~l~~~~----~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE------RTTLVPNV----GRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSC----SSEEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc------eEEEECCC----CCcceEEEccccCEEEEEECC
Confidence 3323445678999999555555444 25678888877632 11122221 467899999988777774 5
Q ss_pred CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 475 EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 475 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+.|..+|+..... ..+.. .......+++.. +..+++-...+.|...|..+|+....+.
T Consensus 187 ~~~I~~~d~dG~~~-~v~~~--~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 187 TNLIESSNMLGLNR-EVIAD--DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp TTEEEEEETTSCSC-EEEEE--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEcCCCCce-EEeec--cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEe
Confidence 67899999864333 33322 244566788765 3444444457899999988776555443
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.72 E-value=0.012 Score=62.25 Aligned_cols=226 Identities=8% Similarity=-0.042 Sum_probs=130.9
Q ss_pred EEEEeCCcEEEEEcCCCc-eeeEecCCCCCeEEEEEcCCC-e-EEEEeCCCcEEEEeCCCCce-EEEeeCccccEEEEEE
Q 007306 337 LFSASGGKISIFSLETFQ-TLATFANPPPIATYFILLPQD-L-FAFGFDDSSILVHCPCTKKT-KAKLKGHQNRITCLAY 412 (608)
Q Consensus 337 l~s~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~v~~~~~ 412 (608)
|+-+....|+..++.... ...........+..++|++.+ . +++-...+.|..+++..... ...+.........+++
T Consensus 12 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp EEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred EEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 444456778888887543 222222334456789999866 4 44545567899999876532 2233333356889999
Q ss_pred eCCCC-EEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE---eCCcEEEEECCCCce
Q 007306 413 SLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI---HEGQIDVYEAPTLNH 488 (608)
Q Consensus 413 ~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~---~d~~i~iwd~~~~~~ 488 (608)
.+.+. ++++-...+.|.+.++.... ...+..... .....|++.|.+..|+.+ ..+.|...++. |..
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~~------~~~l~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~ 161 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGSL------RKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSS 161 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCS------CEEEECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCS
T ss_pred EecCCEEEEEeCCCCEEEEEECCCCC------EEEEEeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCc
Confidence 99554 55555667899999998632 111221222 346689999986666653 24677777774 444
Q ss_pred eeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEE
Q 007306 489 TSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIA 567 (608)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~la 567 (608)
...+... .-.....++++++++.|+.+. ..+.|...++............ . .+ ..++++.. + .++.
T Consensus 162 ~~~l~~~-~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-----~--~~---P~gi~~~~-~-~ly~ 228 (619)
T 3s94_A 162 RFIIINS-EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-----L--PH---PFALTLFE-D-ILYW 228 (619)
T ss_dssp CEEEECS-SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-------------------CCCEEESS-S-EEEE
T ss_pred eEEEEeC-CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-----C--CC---ceEEEEeC-C-EEEE
Confidence 3344322 256688999999877776664 4578999998765433322210 0 11 22567765 3 4555
Q ss_pred EEeCCCcEEEEeCCCCcc
Q 007306 568 LGLTNGRVHVIEPLESEV 585 (608)
Q Consensus 568 s~s~Dg~v~iW~~~~~~~ 585 (608)
+-...+.|...|..+++.
T Consensus 229 td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 229 TDWSTHSILACNKYTGEG 246 (619)
T ss_dssp ECTTTCSEEEEESSSCCC
T ss_pred ecCCCCEEEEEECCCCcc
Confidence 555667888888877653
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.66 E-value=0.087 Score=55.75 Aligned_cols=333 Identities=11% Similarity=-0.007 Sum_probs=175.6
Q ss_pred CCCceeEeecCCCCeEEEee-cCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEe-CCCcEEEEe
Q 007306 210 NNQSRESTSLPDADSAVCAK-SLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALT-QTATHKLWK 287 (608)
Q Consensus 210 ~~~~~~~~~s~dg~~l~~~~-~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s-~dg~i~iw~ 287 (608)
-.....+.+.+.+..|+.+. ..+.|..++.++. .....+ +.. .......+++.+.+..|+.+. ..+.|.+.+
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~---~~~~~v-~~~--~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT---ESVQNV-VVS--GLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-ECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC---CceEEE-EeC--CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 33455667888777776665 4677888888642 111111 211 235789999999666555554 467888777
Q ss_pred cCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEe-C--CcEEEEEcCCCceeeEecCC
Q 007306 288 WQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSAS-G--GKISIFSLETFQTLATFANP 362 (608)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~-d--~~i~vwd~~~~~~~~~~~~~ 362 (608)
........ +.. ..-.....|++. +..|+.+. . +.|...+++...........
T Consensus 113 ~dG~~~~~----------l~~-------------~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 113 LDGSLRKV----------LFW-------------QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TTSCSCEE----------EEC-------------SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS
T ss_pred CCCCCEEE----------EEe-------------CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCC
Confidence 65432200 000 122335567776 45555555 2 56666666533222222233
Q ss_pred CCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceec
Q 007306 363 PPIATYFILLPQD--LFAFGFDDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLC 440 (608)
Q Consensus 363 ~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 440 (608)
-.....+++++++ +.++-...+.|..+|+..........+.......+++..+ ..+++-...+.|...|..+++...
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 4556899999876 4445456678999998754333222212222345666654 444454567788888887654211
Q ss_pred c------c--ceeeee------ccCCC---CccceEEEEE-----------c-------CCC--------CEEEEEeCCc
Q 007306 441 S------K--FLHSFQ------TGLVP---ETTIVNHIQF-----------H-------PDQ--------IHLLSIHEGQ 477 (608)
Q Consensus 441 ~------~--~~~~~~------~~~~~---~~~~v~~v~~-----------s-------p~~--------~~l~~~~d~~ 477 (608)
. . .+. +. .+..+ ..+....+++ . +|+ .+|+.+..+.
T Consensus 249 ~i~~~~~~p~~i~-v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~ 327 (619)
T 3s94_A 249 EIHSDIFSPMDIH-AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTD 327 (619)
T ss_dssp ECCSCCCCCSEEE-ECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSC
T ss_pred EEecCCCCCcEEE-EEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccc
Confidence 0 0 000 00 00000 0001111111 1 121 2455566677
Q ss_pred EEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEE
Q 007306 478 IDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVI 556 (608)
Q Consensus 478 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v 556 (608)
|+..++..............-..+..++|++.+..|+.+. ..+.|+.+++........+.. + -. .+..+
T Consensus 328 i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~------~--~~--~p~Gl 397 (619)
T 3s94_A 328 LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA------Q--IA--HPDGI 397 (619)
T ss_dssp EEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS------S--CS--CCCEE
T ss_pred eEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEEC------C--CC--CcCce
Confidence 8888886543211111111245678899998666666554 468899999876543333221 1 11 13377
Q ss_pred EEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 557 AAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 557 ~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
++.+.++++..+-+..+.|.+.++...
T Consensus 398 AvD~~~~~lY~tD~~~~~I~v~~~~G~ 424 (619)
T 3s94_A 398 AVDWVARNLYWTDTGTDRIEVTRLNGT 424 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEecccCcEEEEeCCCCcEEEEeCCCC
Confidence 777644556666666778888887654
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.65 E-value=0.0028 Score=60.24 Aligned_cols=161 Identities=14% Similarity=0.036 Sum_probs=105.2
Q ss_pred eEEEEEcCCC-eEEEEe-CCCcEEEEeCCCCceEEE-eeC----c--cccEEEEEE---eCCCCEEEEEc----------
Q 007306 366 ATYFILLPQD-LFAFGF-DDSSILVHCPCTKKTKAK-LKG----H--QNRITCLAY---SLSLNVLVSSG---------- 423 (608)
Q Consensus 366 v~~~~~~~~~-~l~~~~-~d~~i~vwd~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~s~~---------- 423 (608)
..++.|++.. .+..++ ..++|..||...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 3478898866 666655 789999999986644333 221 0 124678999 68887777543
Q ss_pred ---CCCcEEEEECC---CCceecccceeeeecc------CCCCccceEEEEEcCCCCEEEE-EeC-CcEEEEECCCCcee
Q 007306 424 ---ADAQLCVWDAV---GWKKLCSKFLHSFQTG------LVPETTIVNHIQFHPDQIHLLS-IHE-GQIDVYEAPTLNHT 489 (608)
Q Consensus 424 ---~d~~i~vwd~~---~~~~~~~~~~~~~~~~------~~~~~~~v~~v~~sp~~~~l~~-~~d-~~i~iwd~~~~~~~ 489 (608)
.+..+..||+. +++......+.....+ ... .....++..++|+.-++ +.. +.|...+.. |+.+
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~~ 171 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKTV 171 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCCE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCEE
Confidence 26779999998 6543322222111111 111 35789999999998887 566 777777774 3333
Q ss_pred eeecC----CCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 490 SQLVP----DKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 490 ~~~~~----~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
..+.. .......+.++++|+|+.|++...+|.+..+|+.+
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 32211 11123467899999999988887799999999884
No 302
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=0.024 Score=57.55 Aligned_cols=249 Identities=8% Similarity=-0.053 Sum_probs=133.0
Q ss_pred cEEEEEEee-CCCEEEEEeC-CCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccC-CCCCCeEEEEE-----
Q 007306 261 RVVRLIYSH-SGDFLVALTQ-TATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAA-DPKDSISCFAL----- 332 (608)
Q Consensus 261 ~V~~~~fsp-~g~~l~s~s~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~----- 332 (608)
....|+|+| ++..|+.+.. .+.|++.|...+ .+....-.. ........++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~---------------------~v~~l~~~~~~~~~~p~~ia~~~~~~ 198 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR---------------------MLSSPLNINTIPTNRIRSIAFNKKIE 198 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT---------------------EEEEEECCTTSSCSBEEEEEECCCBT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC---------------------EEEEEEccCccccCCCcEEEEeeccc
Confidence 467899998 3444555444 355555554443 322211100 12235788999
Q ss_pred --e--CCEEEEEe-CC-c------EEEEEcCC-Ccee-----eEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCC
Q 007306 333 --R--GSHLFSAS-GG-K------ISIFSLET-FQTL-----ATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPC 392 (608)
Q Consensus 333 --s--~~~l~s~~-d~-~------i~vwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~ 392 (608)
+ ++.|+.+. .+ . |.+++... +... ..+... .....++++|++ ++++-..++.|..+|+.
T Consensus 199 ~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 199 GYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 7 77677776 33 2 55665433 2221 122211 123467889965 56666678889999987
Q ss_pred -------CCce-----------EEE-ee-CccccEEEEEEeCCCCE-EEEEcCCCcEEEEECCCCc--eecccceeee--
Q 007306 393 -------TKKT-----------KAK-LK-GHQNRITCLAYSLSLNV-LVSSGADAQLCVWDAVGWK--KLCSKFLHSF-- 447 (608)
Q Consensus 393 -------~~~~-----------~~~-~~-~~~~~v~~~~~~~~~~~-l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~-- 447 (608)
++.. ... +. +.......++|+|+|+. +++-+....|+.++..... ......+--.
T Consensus 278 ~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g 357 (496)
T 3kya_A 278 DYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYK 357 (496)
T ss_dssp HHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTT
T ss_pred cccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCC
Confidence 5543 112 21 12344678999999995 5555567889886654311 0000000000
Q ss_pred eccCCC------CccceE-EEEEc-------CCCCEEEE-EeCCcEEEEECCCCceeeeecCCC----------------
Q 007306 448 QTGLVP------ETTIVN-HIQFH-------PDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDK---------------- 496 (608)
Q Consensus 448 ~~~~~~------~~~~v~-~v~~s-------p~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~---------------- 496 (608)
..+... .-.... .++.. ++|.+.++ ...+.|+.++. +|. +.++.+.+
T Consensus 358 ~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG 435 (496)
T 3kya_A 358 QSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDG 435 (496)
T ss_dssp BCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCE
T ss_pred CCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCC
Confidence 000000 001233 44554 45555555 46788999994 563 44443210
Q ss_pred ------CCCCeEEEEEecC-CCEEEEEEcCCeEEEEeCCCCcee
Q 007306 497 ------MDLPITYATYSCD-GKCIYVSCKSGHVKVFDTSTLELR 533 (608)
Q Consensus 497 ------~~~~v~~~~~s~~-~~~l~sg~~dg~i~iwd~~~~~~~ 533 (608)
.-.....++++++ |.++++=..++.|+.++++.....
T Consensus 436 ~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp ETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 0134678888886 665555556678888887765433
No 303
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.53 E-value=0.0054 Score=58.24 Aligned_cols=168 Identities=8% Similarity=0.030 Sum_probs=108.4
Q ss_pred ccccEEEEEEeCCCCEEEEEc-CCCcEEEEECCCCceecccceeeeec----cCCCCccceEEEEE---cCCCCEEEEEe
Q 007306 403 HQNRITCLAYSLSLNVLVSSG-ADAQLCVWDAVGWKKLCSKFLHSFQT----GLVPETTIVNHIQF---HPDQIHLLSIH 474 (608)
Q Consensus 403 ~~~~v~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~---sp~~~~l~~~~ 474 (608)
......++.|++....+..++ ..++|..||...+... .+. +.. +.. ...+..+.| .|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~---~~~-~~~~s~~g~~--~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF---NVV-IDGASSNGDG--EQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE---EEC-CTTTCCSSCC--SEEEEEEEESSSSSCCEEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE---EEe-cCCccccCCC--cceeeEEEEeccCCCCcEEEEEc
Confidence 344455788988555555444 7899999999753221 111 111 111 024578999 68888887643
Q ss_pred --------------CCcEEEEECC---CCceeeeecCCC-----------CCCCeEEEEEecCCCEEEEEEcC-CeEEEE
Q 007306 475 --------------EGQIDVYEAP---TLNHTSQLVPDK-----------MDLPITYATYSCDGKCIYVSCKS-GHVKVF 525 (608)
Q Consensus 475 --------------d~~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~sg~~d-g~i~iw 525 (608)
++.+..||+. +++.+....... .......++..++|+..++++.. +.|...
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 5679999998 777665443210 12347899999999999999988 888887
Q ss_pred eCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 007306 526 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLE 582 (608)
Q Consensus 526 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~ 582 (608)
+..... ...+... + +.+. .....+.++++| ++..|++...+|.+..+|+.+
T Consensus 165 ~pdG~~-~~~~~~~-~-~~~~--~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 165 SADGKT-VSTFAWE-S-GNGG--QRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CTTSCC-EEEEEEC-C-CCSS--SCCSCSEEEEET-TTTEEEEESSSSSEEEEECSS
T ss_pred eCCCCE-Eeeeeec-C-CCcc--cccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCC
Confidence 776543 2222211 1 1111 112244899999 788888887799999999874
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.50 E-value=0.087 Score=51.64 Aligned_cols=228 Identities=14% Similarity=0.149 Sum_probs=145.2
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-CceEEEeeCcc----ccEE
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 408 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~----~~v~ 408 (608)
.+.++.-...++.++|+++...++.+.-.. .|..=.|-.+..|+..+ +..|+-|++.. ..+.+.|..|. ..|.
T Consensus 77 ~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QII 154 (494)
T 1bpo_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 154 (494)
T ss_dssp SSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEE
T ss_pred CcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEE
Confidence 344454457899999999998888877544 44455565554333322 56899999974 35667776553 4677
Q ss_pred EEEEeCCCCEEEEEcC-------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC--CCEEEE-Ee----
Q 007306 409 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD--QIHLLS-IH---- 474 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~--~~~l~~-~~---- 474 (608)
.-..+++.++++..+- .|.+.+|..+. +.-+ ..+||. +.-.++.+..+ ...+++ +.
T Consensus 155 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------~~sQ-~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 155 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------KVSQ-PIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp EEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT------CCEE-EECCSE---EEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred EEEECCCCCeEEEEeecccCCcccceEEEeeccc------cccc-hheeee---eeeEEEecCCCCCCceEEEEEEecCC
Confidence 7778899999775432 46788998876 2222 566775 23333333221 122333 42
Q ss_pred CCcEEEEECCCC---c------eeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccC
Q 007306 475 EGQIDVYEAPTL---N------HTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 544 (608)
Q Consensus 475 d~~i~iwd~~~~---~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 544 (608)
.+.++|.++... . .+..+..+ ...+...++..|+....++.-+.-|.|++||++++..+..-...
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs----- 299 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS----- 299 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc-----
Confidence 268999998532 1 11112221 22567788999999999999999999999999999988776543
Q ss_pred CCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 545 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 545 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
...+. ..+.+. ...=++.....|.|.--.+.+..
T Consensus 300 ---~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 300 ---GETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp ---SSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred ---CCceE--EecccC-CCCcEEEEccCceEEEEEEcccc
Confidence 44455 334444 34455666688888777666543
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.49 E-value=0.032 Score=53.24 Aligned_cols=226 Identities=10% Similarity=0.011 Sum_probs=115.5
Q ss_pred EEEEEe-C--CcEEEEEcCCCceeeE--ecCCCCCeEEEEEcCCC-eEEEEeCC----CcEEEEeCCCCceEEE--eeCc
Q 007306 336 HLFSAS-G--GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD----SSILVHCPCTKKTKAK--LKGH 403 (608)
Q Consensus 336 ~l~s~~-d--~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d----~~i~vwd~~~~~~~~~--~~~~ 403 (608)
+++.|+ + ..+.+||..+++-... +........++ .-++ .++.|+.+ ..+.+||+.+++.... +...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 344555 3 5789999987654322 11111122222 2356 77777755 5789999988754332 1111
Q ss_pred cccEEEEEEeCCCCEEEEEcCC------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee--
Q 007306 404 QNRITCLAYSLSLNVLVSSGAD------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-- 474 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~-- 474 (608)
......+. -+++.++.|+.+ ..+.+||..+.+-.. +..++.... .-..+.+ +++.++. |.
T Consensus 92 r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~ 160 (306)
T 3ii7_A 92 RDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLTQRC----SHGMVEA--NGLIYVCGGSLG 160 (306)
T ss_dssp CBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSSCCB----SCEEEEE--TTEEEEECCEES
T ss_pred ccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcCCcc----eeEEEEE--CCEEEEECCCCC
Confidence 11112222 267777777765 468899988754221 111111111 1112222 4555555 32
Q ss_pred -------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCceeEEEeceeec
Q 007306 475 -------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYA 542 (608)
Q Consensus 475 -------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 542 (608)
-..+.+||..+.+-...-........-. ++ .-++++++.|+.+ ..+.+||+.+.+-...-. .
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~-~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHG-LV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP----M 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCE-EE-EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----C
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcce-EE-EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----C
Confidence 3458999998765332211111111112 22 2367777777654 468999998875433211 1
Q ss_pred cCCCcccccccEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCcccccc
Q 007306 543 QPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGK 589 (608)
Q Consensus 543 ~~g~~~~~v~~~~v~~sp~d~~~las~s~D-----g~v~iW~~~~~~~~~~~ 589 (608)
+.. .....++.+ ++.+++.|+.+ ..+.+||+.+.+ |..
T Consensus 235 p~~----r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~ 277 (306)
T 3ii7_A 235 PWK----GVTVKCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVA 277 (306)
T ss_dssp SCC----BSCCEEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEE
T ss_pred CCC----ccceeEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEe
Confidence 111 011112222 46788888854 468888887754 544
No 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.47 E-value=0.034 Score=53.08 Aligned_cols=186 Identities=8% Similarity=0.013 Sum_probs=97.1
Q ss_pred CCEEEEEe-C----CcEEEEEcCCCceeeEecCCC--CCeEEEEEcCCC-eEEEEeCC------CcEEEEeCCCCceEEE
Q 007306 334 GSHLFSAS-G----GKISIFSLETFQTLATFANPP--PIATYFILLPQD-LFAFGFDD------SSILVHCPCTKKTKAK 399 (608)
Q Consensus 334 ~~~l~s~~-d----~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~-~l~~~~~d------~~i~vwd~~~~~~~~~ 399 (608)
+..++.|+ + ..+.+||+.+++-...-.... .....+. -++ .++.|+.+ ..+.+||+.+.+....
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 55666666 4 578899998765433322111 1222222 256 66777755 4689999988754332
Q ss_pred --eeCccccEEEEEEeCCCCEEEEEcC---------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCC
Q 007306 400 --LKGHQNRITCLAYSLSLNVLVSSGA---------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQI 468 (608)
Q Consensus 400 --~~~~~~~v~~~~~~~~~~~l~s~~~---------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 468 (608)
+......-.++. -+++.++.|+. -..+.+||+.+.+-. .+..+.... ..-..+.+ +++
T Consensus 134 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~~~--~~~ 202 (306)
T 3ii7_A 134 PSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIEAR----KNHGLVFV--KDK 202 (306)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSSCC----BSCEEEEE--TTE
T ss_pred CCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccchh----hcceEEEE--CCE
Confidence 111111111222 26677777664 345889999875422 121111111 11122222 455
Q ss_pred EEEE-EeC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCceeE
Q 007306 469 HLLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRC 534 (608)
Q Consensus 469 ~l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~~ 534 (608)
.++. |.+ ..+.+||..+.+-...-..+........+.+ +++.++.|+.+ ..+.+||..+.+-..
T Consensus 203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 5555 332 4689999987653322111111122222222 67788888754 578999998876443
No 307
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.43 E-value=0.083 Score=49.72 Aligned_cols=228 Identities=13% Similarity=0.149 Sum_probs=144.5
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCC-CceEEEeeCcc----ccEE
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCT-KKTKAKLKGHQ----NRIT 408 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~-~~~~~~~~~~~----~~v~ 408 (608)
.+.+|.-...++.++|+++.+.++.+.-. ..|..=.|-.+..|+..+ +..|+-|++.. ..+.+.+..|. ..|.
T Consensus 78 ~~ViALrag~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QII 155 (365)
T 2xzh_A 78 SKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQII 155 (365)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEE
T ss_pred ccEEEEecCCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEE
Confidence 44455555788999999999888887754 456566676555333322 45899999874 35667776553 4677
Q ss_pred EEEEeCCCCEEEEEcC-------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc--CCCCEEEE-Ee----
Q 007306 409 CLAYSLSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IH---- 474 (608)
Q Consensus 409 ~~~~~~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~~~~l~~-~~---- 474 (608)
.-..+++.++++..+- .|.+.+|..+. + +....+||. +.-..+.+. +....|++ +.
T Consensus 156 nY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------~-~sQ~ieGha---a~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 156 NYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------K-VSQPIEGHA---ASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp EEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT------T-EEEEECCSE---EEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred EEEECCCCCEEEEEeEeccCCccceeEEEEeecc------c-ccceeeeee---eeeEEEecCCCCCCceEEEEEEecCC
Confidence 7778889998765442 36788998876 2 222566775 222222221 11122333 32
Q ss_pred CCcEEEEECCCC---c------eeeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccC
Q 007306 475 EGQIDVYEAPTL---N------HTSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQP 544 (608)
Q Consensus 475 d~~i~iwd~~~~---~------~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 544 (608)
.+.++|.++... . .+..+..+ ...+...++..|+.-..++.-+.-|.|++||++++.++..-...
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS----- 300 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS----- 300 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC-----
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC-----
Confidence 268999998432 1 11112222 22667788999999899999999999999999999988776543
Q ss_pred CCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 545 GTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 545 g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
...+.+ .+.+. ...=++.....|.|.--.+.+..
T Consensus 301 ---~d~iF~--ta~~~-~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 301 ---GETIFV--TAPHE-ATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp ---SSCEEE--EEEEG-GGTEEEEEETTCEEEEEEECTTT
T ss_pred ---CCceEE--ecccC-CCCcEEEEcCCCEEEEEEECccc
Confidence 444553 33333 23445555688887776665543
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.28 E-value=0.044 Score=52.12 Aligned_cols=222 Identities=11% Similarity=0.019 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCc---eEEE--eeCccccEEEEE
Q 007306 343 GKISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKK---TKAK--LKGHQNRITCLA 411 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~i~vwd~~~~~---~~~~--~~~~~~~v~~~~ 411 (608)
..+.+||+.+.+-...-..........+...++ .++.|+.+ ..+.+||+.+++ .... +.........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 367788887665332211111111111222356 77777755 368999998876 3322 111111112222
Q ss_pred EeCCCCEEEEEcCC-----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC-----CcEEE
Q 007306 412 YSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV 480 (608)
Q Consensus 412 ~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d-----~~i~i 480 (608)
+ +++.++.|+.+ ..+.+||..+.+-. .+...+.... .-..+.+ +++.++. |.+ ..+.+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~r~----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQWS---MLGDMQTARE----GAGLVVA--SGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEEE---EEEECSSCCB----SCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeEE---ECCCCCCCcc----cceEEEE--CCEEEEECCCCCCcccceEEE
Confidence 2 67777777654 35888998774422 1221221111 1122222 5565555 333 46899
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCceeEEEeceeeccCCCcccccccEE
Q 007306 481 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 555 (608)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 555 (608)
||..+.+-...-..+........ ..-+++.++.|+.+ ..+.+||+.+.+-...-.. +.. ......
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----p~~----r~~~~~ 249 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGV--ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM----TTP----RCYVGA 249 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC----SSC----CBSCEE
T ss_pred EeCCCCcEEeCCCCCcccccceE--EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC----CCc----ccceeE
Confidence 99987654322111111111122 22367777777764 4689999988764433111 111 111112
Q ss_pred EEEecCCCCEEEEEeCC-----CcEEEEeCCCCccccccC
Q 007306 556 IAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 556 v~~sp~d~~~las~s~D-----g~v~iW~~~~~~~~~~~~ 590 (608)
+.+ ++.+++.|+.+ ..|.+||+.+. .|...
T Consensus 250 ~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 284 (301)
T 2vpj_A 250 TVL---RGRLYAIAGYDGNSLLSSIECYDPIID--SWEVV 284 (301)
T ss_dssp EEE---TTEEEEECCBCSSSBEEEEEEEETTTT--EEEEE
T ss_pred EEE---CCEEEEEcCcCCCcccccEEEEcCCCC--eEEEc
Confidence 222 46677888765 35788888765 46544
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.23 E-value=0.18 Score=49.21 Aligned_cols=228 Identities=10% Similarity=0.044 Sum_probs=122.6
Q ss_pred CCeEEEEEe-CCEEEEEe-CCcEEEEEcCCCc-eeeEec---CCCCCeEEEEEcCC----CeEEEEeC----C----CcE
Q 007306 325 DSISCFALR-GSHLFSAS-GGKISIFSLETFQ-TLATFA---NPPPIATYFILLPQ----DLFAFGFD----D----SSI 386 (608)
Q Consensus 325 ~~v~~v~~s-~~~l~s~~-d~~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~----~~l~~~~~----d----~~i 386 (608)
.....++|. +..|+.+. +|.|++++ .+++ .+..+. ........++++|+ +.|+++.. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346788998 44566666 89999997 3454 222221 12356789999998 44444332 3 567
Q ss_pred EEEeCCCC--c-----eE-EEeeC-ccccEEEEEEeCCCCEEEEEcC-------------CCcEEEEECCCCceeccc--
Q 007306 387 LVHCPCTK--K-----TK-AKLKG-HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK-- 442 (608)
Q Consensus 387 ~vwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~-------------d~~i~vwd~~~~~~~~~~-- 442 (608)
..|+...+ . .+ ..+.. .......++|.|||.++++.+. .|.|.-++.... .....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 77876654 1 11 11221 1123467999999987776432 245555555431 00000
Q ss_pred -ceeeeeccCCCCccceEEEEEcC-CCCEEEE--EeCC--cEEEEECCCCc------------------eeeeecCCCCC
Q 007306 443 -FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS--IHEG--QIDVYEAPTLN------------------HTSQLVPDKMD 498 (608)
Q Consensus 443 -~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~--~~d~--~i~iwd~~~~~------------------~~~~~~~~~~~ 498 (608)
.......++. ....++|+| +|.+.++ +.+. .|.+.. .+. ++..+. ...
T Consensus 187 ~~~~i~a~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~~ 258 (354)
T 3a9g_A 187 PNSPIWSYGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG--SET 258 (354)
T ss_dssp TTCCEEEECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT--TCC
T ss_pred CCCcEEEEccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC--CCC
Confidence 0111223443 345899999 6776666 2222 243332 221 111110 113
Q ss_pred CCeEEEEEe-------cCCCEEEEEEcCCeEEEEeCCCC-ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEe
Q 007306 499 LPITYATYS-------CDGKCIYVSCKSGHVKVFDTSTL-ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 499 ~~v~~~~~s-------~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s 570 (608)
.....++|. .+|.++++....+.|...++... +..... .+. .+ ..-.+..+++.| |+.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~-~~---~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFF-KN---VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EEC-TT---TSCCEEEEEECT-TSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eec-cC---CCCCeeEEEECC-CCcEEEEEe
Confidence 457788883 57777777666788888888753 322111 111 11 112355899999 787766654
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.22 E-value=0.12 Score=49.13 Aligned_cols=222 Identities=12% Similarity=0.094 Sum_probs=111.2
Q ss_pred CcEEEEEcCCCceeeEecCCCCCe-EEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEE--eeCccccEEEEEEe
Q 007306 343 GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK--LKGHQNRITCLAYS 413 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~ 413 (608)
..+..||+.+.+-...-....... .+++. -++ .++.|+.++ .+.+||+.+.+.... +......-..+.
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-- 106 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-- 106 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--
Confidence 357778887655332211111111 12222 256 777777543 688999987754332 111111112222
Q ss_pred CCCCEEEEEcCCC-----cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC-------CcEEE
Q 007306 414 LSLNVLVSSGADA-----QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------GQIDV 480 (608)
Q Consensus 414 ~~~~~l~s~~~d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d-------~~i~i 480 (608)
-+++.++.|+.++ .+.+||+.+.+-.. +....... ..-..+.+ +++.++. |.+ ..+.+
T Consensus 107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH---VAPMNTRR----SSVGVGVV--GGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE---ECCCSSCC----BSCEEEEE--TTEEEEECCEETTTTEECCCEEE
T ss_pred ECCEEEEEcCCCCCccCceEEEEeCCCCeEee---cCCCCCcc----cCceEEEE--CCEEEEEeCCCCCCCccccEEEE
Confidence 2677777777653 57788887744221 11111111 11122222 4555555 332 35899
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCceeEEEeceeeccCCCcccccccEE
Q 007306 481 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLV 555 (608)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 555 (608)
||..+.+-...-..+........+ .-++++++.|+.+ +.+.+||..+.+-...-. . +... ... .
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~---~~~r----~~~-~ 246 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD-M---NMCR----RNA-G 246 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC-C---SSCC----BSC-E
T ss_pred EeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC-C---CCcc----ccC-e
Confidence 999876543221111111112222 2367777777764 468999998876443211 1 1111 111 2
Q ss_pred EEEecCCCCEEEEEeCCC-----cEEEEeCCCCccccccCC
Q 007306 556 IAAHPLEPNRIALGLTNG-----RVHVIEPLESEVEWGKLP 591 (608)
Q Consensus 556 v~~sp~d~~~las~s~Dg-----~v~iW~~~~~~~~~~~~~ 591 (608)
++.. ++.+++.|+.++ .|.+||+.+. .|...+
T Consensus 247 ~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 283 (302)
T 2xn4_A 247 VCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD--KWTVVS 283 (302)
T ss_dssp EEEE--TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECS
T ss_pred EEEE--CCEEEEECCcCCCcccccEEEEcCCCC--eEEECC
Confidence 2222 467888887654 4899999875 466543
No 311
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.22 E-value=0.15 Score=48.07 Aligned_cols=263 Identities=10% Similarity=0.025 Sum_probs=156.6
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCC
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 311 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (608)
..|.|-|+.+. ....+..+.. . +.-.+|..+.+|.-. ..++.|+|+++...
T Consensus 49 ~~VvIiDl~n~---~~~~Rrpi~A---d----sAIMnP~~~ViALra-g~~LQiFnletK~k------------------ 99 (365)
T 2xzh_A 49 AQVVIIDMNDP---SNPIRRPISA---D----SAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------ 99 (365)
T ss_dssp EEEEEEETTST---TSCEEEECCC---S----EEEECSSSSEEEEEE-TTEEEEEETTTTEE------------------
T ss_pred CEEEEEECCCC---CCcccccccc---c----eeeeCCCccEEEEec-CCeEEEechHHhhh------------------
Confidence 36888888863 3333322321 2 233588888666654 67788777665543
Q ss_pred CeeeeccccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCC-CceeeEecCCC----CCeEEEEEcCCC-e-EEEEe--
Q 007306 312 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANPP----PIATYFILLPQD-L-FAFGF-- 381 (608)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~d~~i~vwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~-~-l~~~~-- 381 (608)
++... ....|..=.|- .+.|+-..+..|.-|++.. ..+.+.+..|. ..|.....+++. + +++|-
T Consensus 100 ---lks~~---~~e~VvfWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 173 (365)
T 2xzh_A 100 ---MKAHT---MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 173 (365)
T ss_dssp ---EEEEE---CSSCEEEEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEE
T ss_pred ---hccee---cCCccEEEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEec
Confidence 22111 23455555555 8899999999999999974 45666666543 456677778888 4 44443
Q ss_pred ----CCCcEEEEeCCCCceEEEeeCccccEEEEEEeC--C-CCEEEEEcC---CCcEEEEECCCC-cee---cccceeee
Q 007306 382 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSL--S-LNVLVSSGA---DAQLCVWDAVGW-KKL---CSKFLHSF 447 (608)
Q Consensus 382 ----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~s~~~---d~~i~vwd~~~~-~~~---~~~~~~~~ 447 (608)
-.|.+.+|..+. +.-+.+.||......+.+.- . ...++.+.. .+.+++-++... ... ..+.+. +
T Consensus 174 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vd-i 251 (365)
T 2xzh_A 174 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-V 251 (365)
T ss_dssp ETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEE-E
T ss_pred cCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccce-e
Confidence 236788998774 45567778765443332211 1 123333332 258888888543 111 111111 1
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
+-.......-..++..++....++. ..-|.|++||+.++.++..-+.. ...|...+-+.+..=++.-...|.|.--.
T Consensus 252 ~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~ 329 (365)
T 2xzh_A 252 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVC 329 (365)
T ss_dssp CCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEE
T ss_pred eCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccC--CCceEEecccCCCCcEEEEcCCCEEEEEE
Confidence 1111101134557888887777776 78899999999999998776653 56666666555544455555778777776
Q ss_pred CCCCcee
Q 007306 527 TSTLELR 533 (608)
Q Consensus 527 ~~~~~~~ 533 (608)
++...++
T Consensus 330 v~~~~iv 336 (365)
T 2xzh_A 330 VEEENII 336 (365)
T ss_dssp ECTTTHH
T ss_pred ECcccEe
Confidence 6665543
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.21 E-value=0.13 Score=48.77 Aligned_cols=185 Identities=9% Similarity=0.012 Sum_probs=96.3
Q ss_pred CCEEEEEe-C-----CcEEEEEcCCCc---eeeE--ecCCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCce
Q 007306 334 GSHLFSAS-G-----GKISIFSLETFQ---TLAT--FANPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKT 396 (608)
Q Consensus 334 ~~~l~s~~-d-----~~i~vwd~~~~~---~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~ 396 (608)
+..++.|+ + ..+.+||+.+++ -... +........++. .++ .++.|+.++ .+.+||+.+++.
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 66666666 4 468999988765 3222 211111222222 256 667776543 688999887754
Q ss_pred EEE--eeCccccEEEEEEeCCCCEEEEEcCC-----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCE
Q 007306 397 KAK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIH 469 (608)
Q Consensus 397 ~~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~ 469 (608)
... +......-.++. .+++.++.|+.+ ..+.+||+.+.+-.. +...+... ..-..+.+ +++.
T Consensus 141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~i 209 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMATKR----SGAGVALL--NDHI 209 (301)
T ss_dssp EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE---ECCCSSCC----BSCEEEEE--TTEE
T ss_pred EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe---CCCCCccc----ccceEEEE--CCEE
Confidence 332 211111112222 267777777754 468899988744221 11111111 11122222 4555
Q ss_pred EEE-EeC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCcee
Q 007306 470 LLS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR 533 (608)
Q Consensus 470 l~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~ 533 (608)
++. |.+ ..+.+||..+.+-...-..+........+ .-+++.++.|+.+ ..|.+||..+.+-.
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred EEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 555 332 46999999876543221111111122222 2367777777765 46888998876543
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.19 Score=48.71 Aligned_cols=199 Identities=14% Similarity=0.054 Sum_probs=110.9
Q ss_pred CeEEEEEcCCC-eEEEE------------eCCCcEEEEeCCCC--ceE-EEeeC-----ccccEEEEEEeC--CCC--EE
Q 007306 365 IATYFILLPQD-LFAFG------------FDDSSILVHCPCTK--KTK-AKLKG-----HQNRITCLAYSL--SLN--VL 419 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~------------~~d~~i~vwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~--~l 419 (608)
..-.+...|+| .++++ ..+|.|.++|+.+. +.. -.+.+ .......+.+.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34467788888 44444 26899999998742 221 12222 234567777766 454 34
Q ss_pred EEEcC--CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEe----C--------------CcEE
Q 007306 420 VSSGA--DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH----E--------------GQID 479 (608)
Q Consensus 420 ~s~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~----d--------------~~i~ 479 (608)
++-.. +.+|.+|++...... ...+. ...+..- ...+++.+.++|++.++.. | +.|+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~-~~~~~-~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy 206 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS-LLHLK-TIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT 206 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE-EEEEE-EECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE-EEEEe-ccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence 44333 567888877653211 12222 2222221 5688999999998777632 1 3455
Q ss_pred EEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE-cCCeEEEEeCCC-CceeEEEeceeeccCCCcccccccEEEE
Q 007306 480 VYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC-KSGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIA 557 (608)
Q Consensus 480 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~ 557 (608)
-+|. ++. ..+.. .-.....++||||++.|+.+. ..+.|+.|++.. +++...-. +...| .+-.++
T Consensus 207 r~d~--~~~-~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~---~~~~g------~PDGi~ 272 (355)
T 3sre_A 207 YYSP--NDV-RVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV---LSFDT------LVDNIS 272 (355)
T ss_dssp EECT--TCC-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE---EECSS------EEEEEE
T ss_pred EEEC--CeE-EEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEE---EeCCC------CCceEE
Confidence 5554 322 22221 145678899999999887765 468999999864 43322111 11111 123677
Q ss_pred EecCCCCEEEEEeCC-CcEEEEeCC
Q 007306 558 AHPLEPNRIALGLTN-GRVHVIEPL 581 (608)
Q Consensus 558 ~sp~d~~~las~s~D-g~v~iW~~~ 581 (608)
..+.+|++.+++..+ +.|..|++.
T Consensus 273 vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 273 VDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp ECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EeCCCCcEEEEecCCceEEEEECCC
Confidence 777227777766644 344444443
No 314
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.17 E-value=0.032 Score=54.65 Aligned_cols=152 Identities=15% Similarity=0.114 Sum_probs=95.5
Q ss_pred cCCC-eEEEEeCCCcEEEEeCCCCceEEEeeCc----cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecc-----
Q 007306 372 LPQD-LFAFGFDDSSILVHCPCTKKTKAKLKGH----QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCS----- 441 (608)
Q Consensus 372 ~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----- 441 (608)
..+| .++.+- ++.||..++..+...+.++.. -..|..+..+|+|++||..+ +..|.|-.+..+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 3445 444443 478888887755445555432 22578899999999999876 56888888873221110
Q ss_pred --cceeeeeccCCC--CccceEEEEEcCCC---CEEEE-EeCCcEEEEECCCCc--ee------eeecCCCCCCCeEEEE
Q 007306 442 --KFLHSFQTGLVP--ETTIVNHIQFHPDQ---IHLLS-IHEGQIDVYEAPTLN--HT------SQLVPDKMDLPITYAT 505 (608)
Q Consensus 442 --~~~~~~~~~~~~--~~~~v~~v~~sp~~---~~l~~-~~d~~i~iwd~~~~~--~~------~~~~~~~~~~~v~~~~ 505 (608)
...++..-+... ...+|..+.|+|-+ ..|++ ..|+.|++||+.... +. ..+........|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 011111111100 11679999999964 56777 799999999997522 22 1111112236799999
Q ss_pred EecCCCEEEEEE--cCCeEEEE
Q 007306 506 YSCDGKCIYVSC--KSGHVKVF 525 (608)
Q Consensus 506 ~s~~~~~l~sg~--~dg~i~iw 525 (608)
|++++-.|+..+ ++|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999988777755 78888754
No 315
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00093 Score=64.35 Aligned_cols=202 Identities=6% Similarity=-0.029 Sum_probs=111.0
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeCc-cccEEEEEE--eC-CCCEEEEE-cCCCcEEEEECCCCceecccceeeeecc
Q 007306 376 LFAFGFDDSSILVHCPCTKKTKAKLKGH-QNRITCLAY--SL-SLNVLVSS-GADAQLCVWDAVGWKKLCSKFLHSFQTG 450 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 450 (608)
.+++++.||.|.-+|..+|+....++.. ..++....- .+ ++..++.. +.||.+..+|..++.......+..+. .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv-~ 90 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV-S 90 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH-T
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce-e
Confidence 7889999999999999999999888753 122222110 01 22333333 58999999998876432211111010 0
Q ss_pred CCCCccceEE---EEE------cCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCe-----EEEEEe-----cCC
Q 007306 451 LVPETTIVNH---IQF------HPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPI-----TYATYS-----CDG 510 (608)
Q Consensus 451 ~~~~~~~v~~---v~~------sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v-----~~~~~s-----~~~ 510 (608)
. .++.. ..+ +.+ ..+++ +.++.+...|+.+|+.+.++........+ .+.... ..+
T Consensus 91 -~---SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 91 -T---SPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp -T---CSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred -c---cccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 0 12221 001 133 44555 79999999999999999988653211111 111110 124
Q ss_pred CEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCcccc-cc
Q 007306 511 KCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW-GK 589 (608)
Q Consensus 511 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~-~~ 589 (608)
..|+.|..+..+.+.+ .+|+ +..+....+..... ...+. ..-..+. |+.+ +.++.||.|.-.|..+|+.+| ..
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W~~~ 239 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARWVSP 239 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEEECC
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEEEee
Confidence 5788888888888877 5564 44333222211110 00000 0000112 4555 447889999999999999999 54
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.07 E-value=0.25 Score=48.08 Aligned_cols=225 Identities=10% Similarity=0.048 Sum_probs=116.2
Q ss_pred CeEEEEEe--CCEEEEEe-CCcEEEEEcCCCce--eeEec---CCCCCeEEEEEcCC----CeEEEEe-CC-----CcEE
Q 007306 326 SISCFALR--GSHLFSAS-GGKISIFSLETFQT--LATFA---NPPPIATYFILLPQ----DLFAFGF-DD-----SSIL 387 (608)
Q Consensus 326 ~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~----~~l~~~~-~d-----~~i~ 387 (608)
.-..++|. |+ ++.+. +|.|.+++ +++. +..+. ........++++|+ +.|+++. .. +.|.
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 45688998 55 55555 89999998 4432 22121 22356789999998 4444333 22 6788
Q ss_pred EEeCCCCc-----e-EEEee---CccccEEEEEEeCCCCEEEEEcC-------------CCcEEEEECCCCceeccc---
Q 007306 388 VHCPCTKK-----T-KAKLK---GHQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKLCSK--- 442 (608)
Q Consensus 388 vwd~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~s~~~-------------d~~i~vwd~~~~~~~~~~--- 442 (608)
.++...+. . +..+. +.......++|.|||.+.++.+. .|.|.-++... +.....
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88876542 1 11132 11123468999999987766432 14566565543 100000
Q ss_pred -----ceeeeeccCCCCccceEEEEEcC-CCCEEEE-E-eCC-------cEEEEECCCCc------------------ee
Q 007306 443 -----FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS-I-HEG-------QIDVYEAPTLN------------------HT 489 (608)
Q Consensus 443 -----~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~-~-~d~-------~i~iwd~~~~~------------------~~ 489 (608)
....+..++. ....++|+| ++.+.++ . .+. .|.+. ..+. ++
T Consensus 188 ~~~~~~~~i~a~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYSLGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEEECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEEEcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCCCCcCCe
Confidence 0111222332 356789999 6666665 2 222 23333 2222 11
Q ss_pred eeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeE-EEeceeeccCCCcccccccEEEEEecCCCCEEEE
Q 007306 490 SQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRC-QINLTAYAQPGTISLELYPLVIAAHPLEPNRIAL 568 (608)
Q Consensus 490 ~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las 568 (608)
..+ .+......++| .+|.++++....+.|...++....... ......+. .. . -.+..+++.| |+.+.++
T Consensus 262 ~~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~--~--~rp~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 262 YFW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SG--F--GRLREVQVGP-DGALYVT 331 (352)
T ss_dssp EEC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ES--S--CCEEEEEECT-TSCEEEE
T ss_pred Eec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-cc--C--CCeeEEEECC-CCcEEEE
Confidence 111 11234567777 567666666566778777776443110 00001111 01 1 2355899999 6776666
Q ss_pred Ee
Q 007306 569 GL 570 (608)
Q Consensus 569 ~s 570 (608)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.05 E-value=0.095 Score=50.01 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=115.9
Q ss_pred CCEEEEEe-C----CcEEEEEcCCCceeeEecCCCCCe-EEEEEcCCC-eEEEEeC----C-----CcEEEEeCCCCceE
Q 007306 334 GSHLFSAS-G----GKISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFD----D-----SSILVHCPCTKKTK 397 (608)
Q Consensus 334 ~~~l~s~~-d----~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~-~l~~~~~----d-----~~i~vwd~~~~~~~ 397 (608)
+.+++.|+ + ..+.+||..+++-...-....... .+++. .++ .++.|+. + ..+.+||+.+.+..
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 45555555 2 478899988765433211111111 12222 256 6666665 2 46889999877543
Q ss_pred EE--eeCccccEEEEEEeCCCCEEEEEcCC-----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 398 AK--LKGHQNRITCLAYSLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 398 ~~--~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
.. +.........+.+ +++.++.|+.+ ..+.+||..+.+-..... ++... ..-..+.+ +++.+
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r----~~~~~~~~--~~~iy 172 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP---MLTRR----IGVGVAVL--NRLLY 172 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC---CSSCC----BSCEEEEE--TTEEE
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC---CCccc----cceEEEEE--CCEEE
Confidence 22 1111111122222 67777777643 468889988754221111 11111 11122233 45555
Q ss_pred EE-EeC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCceeEEEece
Q 007306 471 LS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLT 539 (608)
Q Consensus 471 ~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~ 539 (608)
+. |.+ ..+.+||..+.+-...-..+........+. -+++.++.|+.+ ..+.+||+.+.+-...-.
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 248 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP-- 248 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC--
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC--
Confidence 55 332 468999998765432211111111222222 267777777765 569999998875433211
Q ss_pred eeccCCCcccccccEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCccccccC
Q 007306 540 AYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-----GRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 540 ~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-----g~v~iW~~~~~~~~~~~~ 590 (608)
.+... ... +++.. ++.+++.|+.+ ..+.+||+.+. .|...
T Consensus 249 --~p~~r----~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~ 293 (308)
T 1zgk_A 249 --MKHRR----SAL-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD--TWSEV 293 (308)
T ss_dssp --CSSCC----BSC-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT--EEEEE
T ss_pred --CCCCc----cce-EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC--EEeec
Confidence 11111 111 22222 46788888754 35788888765 46543
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.04 E-value=0.089 Score=51.02 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=100.7
Q ss_pred CCcEEEEEcCC--Ccee-eEecC-----CCCCeEEEEEcC--CC--eEEEEe-C--CCcEEEEeCCCC--c--eEEEeeC
Q 007306 342 GGKISIFSLET--FQTL-ATFAN-----PPPIATYFILLP--QD--LFAFGF-D--DSSILVHCPCTK--K--TKAKLKG 402 (608)
Q Consensus 342 d~~i~vwd~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~--~l~~~~-~--d~~i~vwd~~~~--~--~~~~~~~ 402 (608)
+|.|.++|.++ ++.. ..+.+ ..-....+.+.+ ++ .|+++. . +.+|.+|++..+ . .+..+.+
T Consensus 82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g 161 (355)
T 3sre_A 82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 161 (355)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence 78999999874 2221 12222 123456677655 34 455543 2 457777765543 2 2234443
Q ss_pred c-cccEEEEEEeCCCCEEEEEcC-----------------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc
Q 007306 403 H-QNRITCLAYSLSLNVLVSSGA-----------------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH 464 (608)
Q Consensus 403 ~-~~~v~~~~~~~~~~~l~s~~~-----------------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 464 (608)
. -...+.+++.++|.+.++... .|.|..+|... +..+..+- ...+.++|+
T Consensus 162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--------~~~~~~~l----~~pNGia~s 229 (355)
T 3sre_A 162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--------VRVVAEGF----DFANGINIS 229 (355)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--------CEEEEEEE----SSEEEEEEC
T ss_pred CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--------EEEeecCC----cccCcceEC
Confidence 2 346889999999988877541 23454454421 11112221 246789999
Q ss_pred CCCCEEEEE--eCCcEEEEECCC-Cce--eeeecCCCCCCCeEEEEEec-CCCEEEEEEcC-CeEEEEeCC
Q 007306 465 PDQIHLLSI--HEGQIDVYEAPT-LNH--TSQLVPDKMDLPITYATYSC-DGKCIYVSCKS-GHVKVFDTS 528 (608)
Q Consensus 465 p~~~~l~~~--~d~~i~iwd~~~-~~~--~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~d-g~i~iwd~~ 528 (608)
||++.++++ ..+.|+.|++.. +.. .+.+. .....-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 230 pDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 230 PDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 999998885 568899999863 332 22332 145677889999 59887766544 344445544
No 319
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.00 E-value=0.75 Score=52.34 Aligned_cols=307 Identities=11% Similarity=-0.003 Sum_probs=161.0
Q ss_pred CCeEEEeecCCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeC------CCEEEEEeC-CCcEEEEecCCCcce
Q 007306 222 ADSAVCAKSLEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHS------GDFLVALTQ-TATHKLWKWQSNKQS 294 (608)
Q Consensus 222 g~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~------g~~l~s~s~-dg~i~iw~~~~~~~~ 294 (608)
+..++.++ ++.+..+.++++. -.+..... -...|.|+++.|. +++++.|.. |++++|+++.+.+..
T Consensus 523 ~~~vvva~-g~~l~~fel~~~~-L~~~~~~~-----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 523 SSQVVVAV-GRALYYLQIHPQE-LRQISHTE-----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp SSEEEEEE-TTEEEEEEEETTE-EEEEEEEE-----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCEEEEEE-CCEEEEEEeeCCc-eeeecccC-----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 34555554 5677777765311 01122222 2568999999863 368999996 999999998754331
Q ss_pred eeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe----CCEEEEEe-CCcEEEEEc--CCCceeeE--ecCCCCC
Q 007306 295 LEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR----GSHLFSAS-GGKISIFSL--ETFQTLAT--FANPPPI 365 (608)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----~~~l~s~~-d~~i~vwd~--~~~~~~~~--~~~~~~~ 365 (608)
. ... + +......++.+. ..+|..|- ||.+.-+.+ .+|..... ..-...+
T Consensus 596 ~----------~~~----------L--~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~p 653 (1158)
T 3ei3_A 596 H----------KEM----------L--GGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQP 653 (1158)
T ss_dssp E----------EEE----------C--CSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSC
T ss_pred E----------EEE----------C--CCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCc
Confidence 0 000 0 111233444443 33667676 888765554 44544322 1112334
Q ss_pred eEEEEEcCCC--eEEEEeCCCcEEEEeCCCCceE-EEeeCccccEE-EEEEeCC--CCEEEEEcCCCcEEEEECCCCcee
Q 007306 366 ATYFILLPQD--LFAFGFDDSSILVHCPCTKKTK-AKLKGHQNRIT-CLAYSLS--LNVLVSSGADAQLCVWDAVGWKKL 439 (608)
Q Consensus 366 v~~~~~~~~~--~l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~v~-~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~ 439 (608)
+.-..+...+ .+++++ ++...++.-. ++.. ..+. -..+. ...|+.. ..-++..+ ++.+++..+...+
T Consensus 654 v~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~-- 726 (1158)
T 3ei3_A 654 TVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ-- 726 (1158)
T ss_dssp CEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBS--SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS--
T ss_pred eEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccC--hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC--
Confidence 5444444444 334333 4444444433 3222 1111 11232 2335332 23355444 5568888876532
Q ss_pred cccceeeeeccCCCCccceEEEEEcCCCCEEEE-E--eC-----------------------------------------
Q 007306 440 CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-I--HE----------------------------------------- 475 (608)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~--~d----------------------------------------- 475 (608)
...+++++-+ ..+..++++|..+.+++ . .+
T Consensus 727 -~~~~~~ipL~-----~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1158)
T 3ei3_A 727 -KLHIRTVPLY-----ESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSF 800 (1158)
T ss_dssp -SEEEEEEECS-----SEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------C
T ss_pred -CeeEEEEeCC-----CCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhc
Confidence 2233334444 35778888887766554 2 10
Q ss_pred ------CcEEEEECCCCceeeeecCCCCCCCeEEEEE---ec-CCCEEEEEE----------cCCeEEEEeCCCCceeEE
Q 007306 476 ------GQIDVYEAPTLNHTSQLVPDKMDLPITYATY---SC-DGKCIYVSC----------KSGHVKVFDTSTLELRCQ 535 (608)
Q Consensus 476 ------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~-~~~~l~sg~----------~dg~i~iwd~~~~~~~~~ 535 (608)
+.|++.|-.+.+.+..+.... ...+.+++. .. ...+++.|+ ..|.|++|++..+++...
T Consensus 801 g~~~~~s~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv 879 (1158)
T 3ei3_A 801 GEEVEVHNLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV 879 (1158)
T ss_dssp CCEEEEEEEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE
T ss_pred CCceeeEEEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE
Confidence 236778877777776665543 455555553 22 247888887 248899999975543322
Q ss_pred EeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCCCCc
Q 007306 536 INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 536 ~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~ 584 (608)
... .. .+.++ +++-- +|.++|+. ..+|++|++...+
T Consensus 880 ~~~---~v----~g~v~--al~~~--~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 880 AEK---EV----KGAVY--SMVEF--NGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEE---EE----SSCEE--EEEEE--TTEEEEEE--TTEEEEEEECTTS
T ss_pred EEE---Ec----CCcCE--EEeee--CCEEEEEc--CCEEEEEECCCCc
Confidence 211 11 22233 65543 35444443 4789999997653
No 320
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.91 E-value=0.059 Score=52.79 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=95.7
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCC----CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCc------------e
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANP----PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKK------------T 396 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~------------~ 396 (608)
|..++.+.++.||.-++..+...+.++.. -..+..+..+|+| +|+..+ +..|.|..+..+. .
T Consensus 32 ~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp TTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred CCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 77888888999999998755555555543 2367889999999 777665 5688888876321 1
Q ss_pred EEEeeC------ccccEEEEEEeC---CCCEEEEEcCCCcEEEEECCCCceecccceeeeec--cCCCCccceEEEEEcC
Q 007306 397 KAKLKG------HQNRITCLAYSL---SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT--GLVPETTIVNHIQFHP 465 (608)
Q Consensus 397 ~~~~~~------~~~~v~~~~~~~---~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~sp 465 (608)
.+.+.- ...+|..+.|+| .+..|++-..|+.|++||+........ .+..... +.......|.+++|.+
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC
Confidence 123322 246799999999 457899999999999999986321111 1110000 1111114688999999
Q ss_pred CCCEEEE-E--eCCcEEE
Q 007306 466 DQIHLLS-I--HEGQIDV 480 (608)
Q Consensus 466 ~~~~l~~-~--~d~~i~i 480 (608)
++-.|.+ . .+|.|+-
T Consensus 190 ~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TSSCEEEEECTTSCEEEE
T ss_pred CCcEEEEEecCCCCCEEE
Confidence 8866666 3 4566654
No 321
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.90 E-value=0.089 Score=59.52 Aligned_cols=190 Identities=12% Similarity=0.138 Sum_probs=117.5
Q ss_pred CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCC--eEEEEeCCCcEEEEeCCC-CceEEEeeCc----ccc
Q 007306 334 GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQD--LFAFGFDDSSILVHCPCT-KKTKAKLKGH----QNR 406 (608)
Q Consensus 334 ~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~vwd~~~-~~~~~~~~~~----~~~ 406 (608)
.+.++.-...++.|+|+++...++.+.-.. +|..=.|-.+. -|+| +..|+.|++.. ..+.+.|..| ...
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~Q 152 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQ 152 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchhcccCe
Confidence 334444457899999999888777765433 45455564444 4444 45899999964 2444555444 456
Q ss_pred EEEEEEeCCCCEEEEEc-------CCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEc--CCCCEEEE-Ee--
Q 007306 407 ITCLAYSLSLNVLVSSG-------ADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFH--PDQIHLLS-IH-- 474 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~-------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--p~~~~l~~-~~-- 474 (608)
|..-..+++.++++..+ ..|.+.+|..... .-+ ..+||. +.-..+.+. +....+++ +.
T Consensus 153 IinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ-~iegha---~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 153 IINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQ-PIEGHA---ASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred eEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cch-hhhHhH---hhhheeccCCCCCCceEEEEEEec
Confidence 77777888999877543 3578889988762 222 455665 222222222 11222333 32
Q ss_pred --CCcEEEEECCCC---ce------eeeecCC-CCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEe
Q 007306 475 --EGQIDVYEAPTL---NH------TSQLVPD-KMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQIN 537 (608)
Q Consensus 475 --d~~i~iwd~~~~---~~------~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 537 (608)
.+.++|.++... .. +..+..+ .......++..|+.-..++.-+.-|.|+++|+.||..+..-.
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 368889888542 11 1111111 124556678888888889999999999999999998776543
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.90 E-value=0.31 Score=46.55 Aligned_cols=224 Identities=9% Similarity=0.044 Sum_probs=111.5
Q ss_pred eCCcEEEEEcCCCceee-EecCCCCCeEEEEEcCCC-eEEEEeC-----C------CcEEEEeCCCCceEEE--eeCccc
Q 007306 341 SGGKISIFSLETFQTLA-TFANPPPIATYFILLPQD-LFAFGFD-----D------SSILVHCPCTKKTKAK--LKGHQN 405 (608)
Q Consensus 341 ~d~~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~-----d------~~i~vwd~~~~~~~~~--~~~~~~ 405 (608)
+...+..||..+++-.. .+..+.......+...++ .++.|+. . ..+.+||+.+++.... +.....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 33678899998876543 111122233333344566 6666663 1 1378899988754321 111111
Q ss_pred cEEEEEEeCCCCEEEEEcCC--------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee-C
Q 007306 406 RITCLAYSLSLNVLVSSGAD--------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E 475 (608)
Q Consensus 406 ~v~~~~~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~-d 475 (608)
.- +++.. +++.++.|+.+ ..+.+||..+.+-.. +..++.... .- +++. -+++.++. |. +
T Consensus 91 ~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~~r~----~~-~~~~-~~~~iyv~GG~~~ 159 (315)
T 4asc_A 91 LF-GLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE---SDPLPYVVY----GH-TVLS-HMDLVYVIGGKGS 159 (315)
T ss_dssp SC-EEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE---CCCCSSCCB----SC-EEEE-ETTEEEEECCBCT
T ss_pred ce-eEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE---CCCCCCccc----ce-eEEE-ECCEEEEEeCCCC
Confidence 11 12222 56677777632 458899998754221 111111111 11 2222 34555555 44 2
Q ss_pred -----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEeCCCCceeEEEeceeeccCC
Q 007306 476 -----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLELRCQINLTAYAQPG 545 (608)
Q Consensus 476 -----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~g 545 (608)
+.+.+||..+.+-...-..+.....-.. ..-+++.++.|+.++ .+.+||..+.+-...-. .+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~ 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGA--TVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEE--EEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEE--EEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc
Confidence 4689999987653222111111111122 223677777787654 58899998875433211 1111
Q ss_pred CcccccccEEEEEecCCCCEEEEEeCCC--------------cEEEEeCCCCccccccC
Q 007306 546 TISLELYPLVIAAHPLEPNRIALGLTNG--------------RVHVIEPLESEVEWGKL 590 (608)
Q Consensus 546 ~~~~~v~~~~v~~sp~d~~~las~s~Dg--------------~v~iW~~~~~~~~~~~~ 590 (608)
. ... +++.. ++.+++.|+.++ .|.+||+.+. .|...
T Consensus 234 r----~~~-~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 283 (315)
T 4asc_A 234 R----SSL-SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGV 283 (315)
T ss_dssp C----BSC-EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEE
T ss_pred c----cce-eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhh
Confidence 1 111 22222 457777777642 3667777665 56554
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.86 E-value=0.23 Score=47.09 Aligned_cols=184 Identities=11% Similarity=0.050 Sum_probs=94.2
Q ss_pred CCEEEEEe-C-----CcEEEEEcCCCceeeEec--CCCCCeEEEEEcCCC-eEEEEeCCC-----cEEEEeCCCCceEEE
Q 007306 334 GSHLFSAS-G-----GKISIFSLETFQTLATFA--NPPPIATYFILLPQD-LFAFGFDDS-----SILVHCPCTKKTKAK 399 (608)
Q Consensus 334 ~~~l~s~~-d-----~~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~l~~~~~d~-----~i~vwd~~~~~~~~~ 399 (608)
+..++.|+ + ..+.+||..+.+-...-. .......++. -++ .++.|+.++ .+.+||+.+.+....
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 55666666 4 358889988765433221 1111222222 256 666676553 588899887754332
Q ss_pred --eeCccccEEEEEEeCCCCEEEEEcCC-------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEE
Q 007306 400 --LKGHQNRITCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHL 470 (608)
Q Consensus 400 --~~~~~~~v~~~~~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l 470 (608)
+........++ . -+++.++.|+.+ ..+.+||+.+.+-.. +...+.... .-..+.+ +++.+
T Consensus 140 ~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~----~~~~~~~--~~~iy 208 (302)
T 2xn4_A 140 APMNTRRSSVGVG-V-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMSTRRS----GAGVGVL--NNLLY 208 (302)
T ss_dssp CCCSSCCBSCEEE-E-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSSCCB----SCEEEEE--TTEEE
T ss_pred CCCCCcccCceEE-E-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCccccc----cccEEEE--CCEEE
Confidence 11111111222 2 256777776643 358899988744221 111111111 1122222 45565
Q ss_pred EE-EeC-----CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC-----eEEEEeCCCCce
Q 007306 471 LS-IHE-----GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG-----HVKVFDTSTLEL 532 (608)
Q Consensus 471 ~~-~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg-----~i~iwd~~~~~~ 532 (608)
+. |.+ +.+.+||..+.+-...-.......... +...+++.++.|+.++ .+.+||..+.+-
T Consensus 209 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 209 AVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG--VCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp EECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCe--EEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 65 443 469999998765432211111111111 2223677777777653 589999988753
No 324
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.03 Score=53.80 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=103.7
Q ss_pred EEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEEEEE-e-CCcEEEEE
Q 007306 273 FLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHLFSA-S-GGKISIFS 349 (608)
Q Consensus 273 ~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~-~-d~~i~vwd 349 (608)
.++.++.||.+.-.|..+++. .|..+.+.........+.... . +..++.. . ||.+..++
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~------------~W~~~~~~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~ 73 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHI------------IWSIEPENFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFN 73 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEE------------EEEECGGGSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcE------------EEEecCCccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEE
Confidence 688899999999999988886 787665410010000001000 1 2333333 4 89999999
Q ss_pred cCCCceeeEecC----CCCCeEE---EEE------cCCCeEEEEeCCCcEEEEeCCCCceEEEeeCcc--cc-----EEE
Q 007306 350 LETFQTLATFAN----PPPIATY---FIL------LPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ--NR-----ITC 409 (608)
Q Consensus 350 ~~~~~~~~~~~~----~~~~v~~---~~~------~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~-----v~~ 409 (608)
..+|.....+.. ...++.. ..+ +.++.+++|+.+|.+...|+.+|+.+..+.... .. ..|
T Consensus 74 ~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~ 153 (339)
T 2be1_A 74 AHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDC 153 (339)
T ss_dssp TTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------
T ss_pred CCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccc
Confidence 888865544431 1112211 001 123388999999999999999999998886421 10 111
Q ss_pred EEEe-----CCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccce-EEEEEcCCCCEEEEEeCCcEEEEEC
Q 007306 410 LAYS-----LSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIV-NHIQFHPDQIHLLSIHEGQIDVYEA 483 (608)
Q Consensus 410 ~~~~-----~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~sp~~~~l~~~~d~~i~iwd~ 483 (608)
.... -.+..++.+..+..+.+.+ ++++ ........ ...... ...+ .+-..+.|+.+++++.||.|..+|.
T Consensus 154 ~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~-~~~~~~-~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~ 229 (339)
T 2be1_A 154 SPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYST-WQQNVL-DVPLALQNTFSKDGMCIAPFRDKSLLASDL 229 (339)
T ss_dssp -----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEE-EECCTT-THHHHTTCSSCSSSCCEEEETTTEEEEECS
T ss_pred ccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccc-cccccc-ccccccccccccCCcEEEECCCCEEEEEEC
Confidence 1111 1235677777677666666 3332 11111110 000000 0000 0001123566666678888888888
Q ss_pred CCCceee
Q 007306 484 PTLNHTS 490 (608)
Q Consensus 484 ~~~~~~~ 490 (608)
.+|..+.
T Consensus 230 ~~G~~~W 236 (339)
T 2be1_A 230 DFRIARW 236 (339)
T ss_dssp TTCCEEE
T ss_pred CCCcEEE
Confidence 8777654
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.75 E-value=0.49 Score=46.46 Aligned_cols=263 Identities=10% Similarity=0.026 Sum_probs=159.1
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCC
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 311 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (608)
..|.|-|+.+. ....+..+.. -+.-.+|..+.+|.-. ..++.|+|+++...
T Consensus 48 ~~vvIiDl~~~---~~~~rrpi~A-------dsAIMnP~~~iiALra-g~~lQiFnle~K~k------------------ 98 (494)
T 1bpo_A 48 AQVVIIDMNDP---SNPIRRPISA-------DSAIMNPASKVIALKA-GKTLQIFNIEMKSK------------------ 98 (494)
T ss_dssp CEEEEEETTST---TSCEEEECCC-------SEEEECSSSSCEEEEE-TTEEEEEETTTTEE------------------
T ss_pred CeEEEEECCCC---Ccceeccccc-------ceeeeCCCCcEEEEec-CCeEEEEchHHhhh------------------
Confidence 46888888763 2333322211 2344678777666544 67788777665543
Q ss_pred CeeeeccccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCC-CceeeEecCC----CCCeEEEEEcCCC-eE-EEEe--
Q 007306 312 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LF-AFGF-- 381 (608)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~d~~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~-~l-~~~~-- 381 (608)
++... ....|..=.|- .+.|+-.++..|.-|++.. ..+.+.+..| ...|.....+++. ++ ++|-
T Consensus 99 ---lks~~---~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~ 172 (494)
T 1bpo_A 99 ---MKAHT---MTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (494)
T ss_dssp ---EEEEE---CSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEE
T ss_pred ---hccee---cCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecc
Confidence 22111 23455555566 8899999999999999974 4566666654 3456677778888 44 4432
Q ss_pred ----CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCC---CCEEEEEcC---CCcEEEEECCCC-ce---ecccceeee
Q 007306 382 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLS---LNVLVSSGA---DAQLCVWDAVGW-KK---LCSKFLHSF 447 (608)
Q Consensus 382 ----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~---d~~i~vwd~~~~-~~---~~~~~~~~~ 447 (608)
-.|.+.+|..+. +.-+.+.||......+...-+ ...++.+.. .+.+++-++... .. ...+.+. +
T Consensus 173 ~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd-v 250 (494)
T 1bpo_A 173 QQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD-V 250 (494)
T ss_dssp ETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE-C
T ss_pred cCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee-e
Confidence 246788998774 445667788665544433211 123444433 278899988543 11 0111111 1
Q ss_pred eccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEe
Q 007306 448 QTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFD 526 (608)
Q Consensus 448 ~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd 526 (608)
+-.......-..++..++....++. ..-|.|++||+.++.++..-+.. ...|...+......=++.-...|.|.--.
T Consensus 251 ~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~ 328 (494)
T 1bpo_A 251 FFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVC 328 (494)
T ss_dssp CCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEETTTTEEEEEETTCEEEEEE
T ss_pred eCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc--CCceEEecccCCCCcEEEEccCceEEEEE
Confidence 1111101134557888888777776 78899999999999998776653 56676666665555555555888887777
Q ss_pred CCCCcee
Q 007306 527 TSTLELR 533 (608)
Q Consensus 527 ~~~~~~~ 533 (608)
++....+
T Consensus 329 v~e~~iv 335 (494)
T 1bpo_A 329 VEEENII 335 (494)
T ss_dssp ECTTTHH
T ss_pred Eccccch
Confidence 7665543
No 326
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.69 E-value=0.52 Score=45.87 Aligned_cols=239 Identities=10% Similarity=0.037 Sum_probs=122.3
Q ss_pred CeEEEEEe--CCEEEEEe-CCcEEEEEcCCCceeeEec-------CCCCCeEEEEEcCC----CeEEEEe-C-------C
Q 007306 326 SISCFALR--GSHLFSAS-GGKISIFSLETFQTLATFA-------NPPPIATYFILLPQ----DLFAFGF-D-------D 383 (608)
Q Consensus 326 ~v~~v~~s--~~~l~s~~-d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~----~~l~~~~-~-------d 383 (608)
..+.++|. |+.++.+. .|.|++++.. +.....+. ........++++|+ +.|.+.. . .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 45788888 55255555 8999999853 33221111 12345689999995 4333332 2 2
Q ss_pred CcEEEEeCCCC--c--eEE-EeeC------ccccEEEEEEeCCCCEEEEEcC-------------CCcEEEEECCCCcee
Q 007306 384 SSILVHCPCTK--K--TKA-KLKG------HQNRITCLAYSLSLNVLVSSGA-------------DAQLCVWDAVGWKKL 439 (608)
Q Consensus 384 ~~i~vwd~~~~--~--~~~-~~~~------~~~~v~~~~~~~~~~~l~s~~~-------------d~~i~vwd~~~~~~~ 439 (608)
..|..|+...+ . ... .+.. .......++|.|||.+.++.+. .|.|.-+|.... ..
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-IP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-CC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-CC
Confidence 35666666433 1 111 1111 1112357999999976666543 245666666531 00
Q ss_pred ccc--------ceeeeeccCCCCccceEEEEEcC-CCCEEEE--EeCCcEEEEECCCCcee-------------------
Q 007306 440 CSK--------FLHSFQTGLVPETTIVNHIQFHP-DQIHLLS--IHEGQIDVYEAPTLNHT------------------- 489 (608)
Q Consensus 440 ~~~--------~~~~~~~~~~~~~~~v~~v~~sp-~~~~l~~--~~d~~i~iwd~~~~~~~------------------- 489 (608)
... .......++. ....++|+| +|++.++ +.++.=.|.-+..+...
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~ 252 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEA 252 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTC
T ss_pred CCCCCcCCCCCCccEEEEcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcc
Confidence 000 1111223443 467899999 6666655 22322223222221110
Q ss_pred -----eeecCC----CCCCCeEEEEEec-------CCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCccccccc
Q 007306 490 -----SQLVPD----KMDLPITYATYSC-------DGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 490 -----~~~~~~----~~~~~v~~~~~s~-------~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~ 553 (608)
..+..+ .+......++|.. +|.++++....+.|...++..++...... +.. .....+
T Consensus 253 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~~~rp 325 (353)
T 2g8s_A 253 KGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DRGQRI 325 (353)
T ss_dssp CBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GGCCCE
T ss_pred cCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CCCCce
Confidence 000000 1123566777763 56777776677888888887654332211 110 111235
Q ss_pred EEEEEecCCCCEEEEEe-CCCcEEEEeC
Q 007306 554 LVIAAHPLEPNRIALGL-TNGRVHVIEP 580 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s-~Dg~v~iW~~ 580 (608)
..+++.| |+.+.++.. .+| +||.+
T Consensus 326 ~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 326 RDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp EEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred eEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 5899999 787666533 344 45554
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.66 E-value=0.29 Score=47.63 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=45.2
Q ss_pred CCEEEEEe--CCcEEEEEcCC--Cce--eeEec-CCCCCeEEEEEcCCC-eEEEEeC-C---------CcEEEEeCCCCc
Q 007306 334 GSHLFSAS--GGKISIFSLET--FQT--LATFA-NPPPIATYFILLPQD-LFAFGFD-D---------SSILVHCPCTKK 395 (608)
Q Consensus 334 ~~~l~s~~--d~~i~vwd~~~--~~~--~~~~~-~~~~~v~~~~~~~~~-~l~~~~~-d---------~~i~vwd~~~~~ 395 (608)
+.+++.|+ ...+.++|+.+ .+- +..+. ...... +++. -++ .++.|+. + ..+.+||+.+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQA-TSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSC-EEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccc-eEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 55556666 46789999864 222 22222 111112 2222 256 6666665 2 468999998875
Q ss_pred eEEEeeCc-cccEEEEEEeCCCCEEEEEcCC
Q 007306 396 TKAKLKGH-QNRITCLAYSLSLNVLVSSGAD 425 (608)
Q Consensus 396 ~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d 425 (608)
....-... .......+...++++++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 43321111 1111111122467788888764
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.66 E-value=0.43 Score=45.50 Aligned_cols=179 Identities=12% Similarity=0.044 Sum_probs=86.9
Q ss_pred EEEEEcCCCceeeEecCCCCCe-EEEEEcCCC-eEEEEeCC--------CcEEEEeCCCCceEEEeeCccccEEEEEEeC
Q 007306 345 ISIFSLETFQTLATFANPPPIA-TYFILLPQD-LFAFGFDD--------SSILVHCPCTKKTKAKLKGHQNRITCLAYSL 414 (608)
Q Consensus 345 i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~-~l~~~~~d--------~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 414 (608)
+..||..+++-...-....... .+++. -++ .++.|+.+ ..+.+||+.+++-...-..........+...
T Consensus 69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 147 (315)
T 4asc_A 69 FLQFDHLDSEWLGMPPLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH 147 (315)
T ss_dssp EEEEETTTTEEEECCCBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred eEEecCCCCeEEECCCCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE
Confidence 7788888765422211111111 12222 255 66666632 3689999988753321111111111111223
Q ss_pred CCCEEEEEcC-C-----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCC-----cEEEEE
Q 007306 415 SLNVLVSSGA-D-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEG-----QIDVYE 482 (608)
Q Consensus 415 ~~~~l~s~~~-d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~-----~i~iwd 482 (608)
+++.++.|+. + ..+.+||..+.+-.. +..++... ..-..+.+ +++.++. |.++ .+.+||
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 218 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQTAR----SLFGATVH--DGRIIVAAGVTDTGLTSSAEVYS 218 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCSSCC----BSCEEEEE--TTEEEEEEEECSSSEEEEEEEEE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCCCch----hceEEEEE--CCEEEEEeccCCCCccceEEEEE
Confidence 6677777776 2 468899988754221 11111111 11122222 4555555 4433 588999
Q ss_pred CCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------------CeEEEEeCCCCceeEE
Q 007306 483 APTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRCQ 535 (608)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d--------------g~i~iwd~~~~~~~~~ 535 (608)
..+.+-...-..+........+ .-+++.++.|+.+ +.+.+||+.+.+-...
T Consensus 219 ~~~~~W~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 219 ITDNKWAPFEAFPQERSSLSLV--SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp TTTTEEEEECCCSSCCBSCEEE--EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCCCeEEECCCCCCcccceeEE--EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 9876543221111111112222 2366777777753 2477888887764433
No 329
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.65 E-value=0.27 Score=47.92 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred CCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceE--EEee---CccccEEEEEEeCC---CCEEEEEcC-C-----CcEE
Q 007306 364 PIATYFILLPQDLFAFGFDDSSILVHCPCTKKTK--AKLK---GHQNRITCLAYSLS---LNVLVSSGA-D-----AQLC 429 (608)
Q Consensus 364 ~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~--~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----~~i~ 429 (608)
.....++|.|+|.++++..++.|++++ +++.. ..+. ........++++|+ +..|..+.. . +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 356799999999444445679999998 44321 1111 12356889999998 444444333 2 6788
Q ss_pred EEECCCCceeccccee-eee--ccCCCCccceEEEEEcCCCCEEEE
Q 007306 430 VWDAVGWKKLCSKFLH-SFQ--TGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 430 vwd~~~~~~~~~~~~~-~~~--~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
.|+...........+. .+. .+.. .....++|.|||.+.++
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~---h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGL---HSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCC---CCCCCEEECTTSCEEEE
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCC---cCCceEEECCCCCEEEE
Confidence 8887643211111221 122 1111 12358999999976666
No 330
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.60 E-value=0.45 Score=45.20 Aligned_cols=176 Identities=10% Similarity=0.032 Sum_probs=89.9
Q ss_pred CcEEEEEcCCCceeeE--ecCCCCCeEEEEEcCCC-eEEEEeCC-----CcEEEEeCCCCceEEE--eeCccccEEEEEE
Q 007306 343 GKISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-----SSILVHCPCTKKTKAK--LKGHQNRITCLAY 412 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d-----~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~ 412 (608)
..+.+||+.+.+-... +........++.+ ++ .++.|+.+ ..+.+||+.+.+.... +......-.++.+
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 167 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL 167 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence 4688999887653322 1111112222222 56 66666643 3688999987754322 1111111122222
Q ss_pred eCCCCEEEEEcCC-----CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC-----CcEEEE
Q 007306 413 SLSLNVLVSSGAD-----AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDVY 481 (608)
Q Consensus 413 ~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d-----~~i~iw 481 (608)
++++++.|+.+ ..+.+||+.+.+-.. +..++... ..-..+.+ +++.++. |.+ ..+.+|
T Consensus 168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNTIR----SGAGVCVL--HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSSCC----BSCEEEEE--TTEEEEECCBCSSSBCCCEEEE
T ss_pred --CCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCCcc----ccceEEEE--CCEEEEEeCCCCCCccceEEEE
Confidence 67777777754 458899988754221 11111111 11222333 4555555 333 569999
Q ss_pred ECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCcee
Q 007306 482 EAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELR 533 (608)
Q Consensus 482 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~ 533 (608)
|+.+.+-...-..+....... ++. -+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred eCCCCcEEECCCCCCCccceE-EEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence 998765432211111111122 222 367777777754 46888998877543
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.56 E-value=0.28 Score=47.76 Aligned_cols=58 Identities=5% Similarity=-0.025 Sum_probs=31.0
Q ss_pred cEEEEECCCCce--eeeecCCCCCCCeEEEEEecCCCEEEEEEcCC------eEEEEeCCCCceeEEEec
Q 007306 477 QIDVYEAPTLNH--TSQLVPDKMDLPITYATYSCDGKCIYVSCKSG------HVKVFDTSTLELRCQINL 538 (608)
Q Consensus 477 ~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg------~i~iwd~~~~~~~~~~~~ 538 (608)
.+.+||..+.+- +..+... ... ..+...+++.++.|+.++ .|.++++++++.+.....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~--r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG--RAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp CCEEEECC---CEEEEECSSC--CBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eEEEEecCCCceeeCCCCCCC--ccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 578999876553 2222211 121 222345778888888652 466778888887766543
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.52 E-value=0.061 Score=47.59 Aligned_cols=149 Identities=14% Similarity=0.111 Sum_probs=84.3
Q ss_pred CCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE------EEe-e-CccccEEEEEEeCCCCEEEEEcCCCcEEEEECC
Q 007306 364 PIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK------AKL-K-GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAV 434 (608)
Q Consensus 364 ~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~------~~~-~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 434 (608)
..+..++|+|+| +.++ .+|.++-.+..+.... ..+ . +... ..++.|.|+|.+.++ .||.|.-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 356799999988 5555 7788777776553221 111 0 1111 468899999988877 56998887753
Q ss_pred CCceecccceee-eeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCce-----eeeecCCCCCCCeEEEEEec
Q 007306 435 GWKKLCSKFLHS-FQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNH-----TSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 435 ~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~s~ 508 (608)
+.......--.+ +-.+-- ..+..|.+.|+|.+-++. |+.++-....++.. ..+......-.....+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 321111000000 111111 367899999999988888 88865444332221 01111111133445566888
Q ss_pred CCCEEEEEEcCCeEE
Q 007306 509 DGKCIYVSCKSGHVK 523 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~ 523 (608)
+|...++. +|.++
T Consensus 192 ~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 192 VGTLFGVQ--GGKFY 204 (236)
T ss_dssp TSCEEEEE--TTEEE
T ss_pred CCcEEEEe--CCeEE
Confidence 88776665 66443
No 333
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.40 E-value=0.23 Score=47.97 Aligned_cols=115 Identities=14% Similarity=-0.043 Sum_probs=66.2
Q ss_pred EeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC---CCEEEE--E
Q 007306 399 KLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD---QIHLLS--I 473 (608)
Q Consensus 399 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~---~~~l~~--~ 473 (608)
.+...-.....++|.|+|+++++--..|.|++++..++.......+..+..... .....|+++|+ +..|++ +
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~---~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGE---GGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTT---BSEEEEEECTTHHHHCEEEEEEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCC---CCceeeEeccccccCCEEEEEEe
Confidence 333334567899999999988776658999999866543211111111111112 46789999996 345554 3
Q ss_pred --eCCcEEEEECCCC----------cee-eeecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 474 --HEGQIDVYEAPTL----------NHT-SQLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 474 --~d~~i~iwd~~~~----------~~~-~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
.++.|.-|....+ +.+ ..+.. .....-..++|.|||.+.++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 3456666665441 111 12221 1123345799999998777644
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.39 E-value=0.35 Score=54.92 Aligned_cols=262 Identities=10% Similarity=0.042 Sum_probs=143.2
Q ss_pred CeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCC
Q 007306 232 EKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSS 311 (608)
Q Consensus 232 ~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (608)
..|.|-|+.+. ....+..+ .--+.-.+|..+.+|.- ...++.|+|+++...
T Consensus 48 ~~vvIidl~~~---~~~~rrpi-------~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~k------------------ 98 (1630)
T 1xi4_A 48 AQVVIIDMNDP---SNPIRRPI-------SADSAIMNPASKVIALK-AGKTLQIFNIEMKSK------------------ 98 (1630)
T ss_pred ceEEEEECCCC---CCcccccc-------cchhhccCCCcceEEEe-cCCeEEEeehHHhhh------------------
Confidence 46888888753 22222111 12233466777755544 367888777755543
Q ss_pred CeeeeccccCCCCCCeEEEEEe-CCEEEEEeCCcEEEEEcCC-CceeeEecCC----CCCeEEEEEcCCC-eE-EEEe--
Q 007306 312 KLVMTNDIAADPKDSISCFALR-GSHLFSASGGKISIFSLET-FQTLATFANP----PPIATYFILLPQD-LF-AFGF-- 381 (608)
Q Consensus 312 ~~~~~~~~~~~~~~~v~~v~~s-~~~l~s~~d~~i~vwd~~~-~~~~~~~~~~----~~~v~~~~~~~~~-~l-~~~~-- 381 (608)
++.. ....+|.-=.|- .+.|+-.++..|.-|++.. ..+.+.+..| ...|.....+++. ++ ++|-
T Consensus 99 ---lks~---~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~ 172 (1630)
T 1xi4_A 99 ---MKAH---TMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISA 172 (1630)
T ss_pred ---hccc---ccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeecc
Confidence 1110 123445444555 7888889999999999963 3455555544 3456667778888 44 4432
Q ss_pred ----CCCcEEEEeCCCCceEEEeeCccccEEEEEEe--CC-CCEEEEEcC---CCcEEEEECCCC-ce---ecccceee-
Q 007306 382 ----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYS--LS-LNVLVSSGA---DAQLCVWDAVGW-KK---LCSKFLHS- 446 (608)
Q Consensus 382 ----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~l~s~~~---d~~i~vwd~~~~-~~---~~~~~~~~- 446 (608)
-.|.+.+|....+ .-+.+.||.+....+... +. ...++.+.. .+.+++-++... .. ...+.+.-
T Consensus 173 ~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~ 251 (1630)
T 1xi4_A 173 QQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (1630)
T ss_pred CCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence 3578888887643 334556665544333332 11 223332222 268888888543 11 00111110
Q ss_pred eeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 447 FQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 447 ~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
++.... ..-..++..++....+.. ..-|.|++||+.||.++..-+.. ...|...+-.....=++.....|.|.--
T Consensus 252 ~~~~~~--~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris--~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 252 FPPEAQ--NDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS--GETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred CCcccc--cCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcccc--CCceEEeccCCCCCceEEEcCCceEEEE
Confidence 111110 133446777877666666 78899999999999987655432 4455444444332233333366666666
Q ss_pred eCCCCcee
Q 007306 526 DTSTLELR 533 (608)
Q Consensus 526 d~~~~~~~ 533 (608)
.+.....+
T Consensus 328 ~v~~~~iv 335 (1630)
T 1xi4_A 328 CVEEENII 335 (1630)
T ss_pred EEccchhh
Confidence 65554443
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.20 E-value=0.2 Score=44.33 Aligned_cols=187 Identities=7% Similarity=-0.027 Sum_probs=98.3
Q ss_pred eEEEEeCCCcEEEEeCCCCce------EEEeeC-ccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeee
Q 007306 376 LFAFGFDDSSILVHCPCTKKT------KAKLKG-HQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQ 448 (608)
Q Consensus 376 ~l~~~~~d~~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 448 (608)
+|++...| +++.=.+..+.. ...+-. -=..+..++|+|+|.+.++ .+|.+.-.+..+..........+..
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 56666667 666655554431 112211 0136779999999987766 6777666665442211110111000
Q ss_pred -c-cCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceee-----eecCCCCCCCeEEEEEecCCCEEEEEEcCCe
Q 007306 449 -T-GLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTS-----QLVPDKMDLPITYATYSCDGKCIYVSCKSGH 521 (608)
Q Consensus 449 -~-~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~ 521 (608)
. +. ..-..+.|.|+|.+.++ .||.|+-++-.+...-. +......-..+..+.|.|+|.+.+.. |+.
T Consensus 83 G~~Gw----~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 83 GNGGW----NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp ECSCG----GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred ccccc----ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 0 11 11358899999988888 88999888764322110 11000012567999999999877777 787
Q ss_pred EEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 007306 522 VKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEP 580 (608)
Q Consensus 522 i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~ 580 (608)
++-+...++....-+.....+ |+..-.++- -+.|.| ++.+.+.. +| ++|..
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~--g~~g~~~yr-~l~f~~-~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKI--GQGGWDTFK-FLFFSS-VGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEE--ESSSGGGEE-EEEECT-TSCEEEEE--TT--EEEEE
T ss_pred EEecCCCCCCCccccccccee--ccCCcceEE-EEEECC-CCcEEEEe--CC--eEEec
Confidence 654444322210000000000 111222332 466888 67666665 66 44443
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.18 E-value=0.92 Score=43.18 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCceeeE-ecCCCCCeEEEEEcCCC-eEEEEeC----CC-------cEEEEeCCCCceEEE--eeCccccE
Q 007306 343 GKISIFSLETFQTLAT-FANPPPIATYFILLPQD-LFAFGFD----DS-------SILVHCPCTKKTKAK--LKGHQNRI 407 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~----d~-------~i~vwd~~~~~~~~~--~~~~~~~v 407 (608)
..+..||..+++-... +..............++ .++.|+. ++ .+.+||+.+++.... +.......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 3478899987765442 11112222233344556 6677763 11 278889887754332 11111111
Q ss_pred EEEEEeCCCCEEEEEcCC-------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-Ee-C---
Q 007306 408 TCLAYSLSLNVLVSSGAD-------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IH-E--- 475 (608)
Q Consensus 408 ~~~~~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~-d--- 475 (608)
+++.. +++.++.|+.+ ..+.+||..+.+-.....+..-..+| +++. .+++.++. |. +
T Consensus 104 -~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--------~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 104 -GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH--------NVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp -EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC--------EEEE-ETTEEEEECCEESSSC
T ss_pred -ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc--------EEEE-ECCEEEEEcCCCCCCC
Confidence 22222 66777777754 34788888874422111111001111 1222 35555555 33 2
Q ss_pred --CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC-----CeEEEEeCCCCceeEEEeceeeccCCCcc
Q 007306 476 --GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS-----GHVKVFDTSTLELRCQINLTAYAQPGTIS 548 (608)
Q Consensus 476 --~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~g~~~ 548 (608)
+.+.+||..+.+-...-..+...... +++ .-+++.++.|+.+ ..+.+||+.+.+-...-. .+...
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r-- 244 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMF-GVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTE----FPQER-- 244 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSC-EEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCC----CSSCC--
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccc-eEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECCC----CCCcc--
Confidence 35999999876543221111111111 222 2366777777653 357889998876433211 11111
Q ss_pred cccccEEEEEecCCCCEEEEEeCC--------------CcEEEEeCCCCccccccC
Q 007306 549 LELYPLVIAAHPLEPNRIALGLTN--------------GRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 549 ~~v~~~~v~~sp~d~~~las~s~D--------------g~v~iW~~~~~~~~~~~~ 590 (608)
... +++.. ++.+++.|+.+ ..+.+||+.+. .|...
T Consensus 245 --~~~-~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~ 293 (318)
T 2woz_A 245 --SSI-SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGM 293 (318)
T ss_dssp --BSC-EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEE
T ss_pred --cce-EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--Eehhh
Confidence 111 22222 46777777754 35778888765 46554
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.12 E-value=2.1 Score=46.59 Aligned_cols=237 Identities=12% Similarity=0.069 Sum_probs=137.8
Q ss_pred CCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEe-CCEE
Q 007306 259 GGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALR-GSHL 337 (608)
Q Consensus 259 ~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~l 337 (608)
...|.++.-.++|. |-.|+.+|.. .||-..-. .+.... ......|.++... ...|
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~GL~-ryDG~~~~-------------~~~~~~---------~~~~~~i~~i~~d~~g~l 76 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKGLF-SYDGYSTQ-------------QHFTYG---------ENNNTRIYCGVIIDNTYL 76 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSCEE-EECSSCEE-------------ECSCTT---------STTSSCEEEEEEETTTEE
T ss_pred cceEEEEEECCCCC-EEEEECCCcc-ccCCCceE-------------EEEccC---------CCCCceEEEEEEcCCCcE
Confidence 56799998888886 5556677643 34421100 111000 0123568887777 6778
Q ss_pred EEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEee-----CccccEEEEEE
Q 007306 338 FSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLK-----GHQNRITCLAY 412 (608)
Q Consensus 338 ~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~ 412 (608)
..++++-+..||..+.+...........|.++.. .+|.|..|+.+ .+..+|..+++.. .+. .....|.++..
T Consensus 77 WigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~ 153 (758)
T 3ott_A 77 YMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIR 153 (758)
T ss_dssp EEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEE
T ss_pred EEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEE
Confidence 8888555889998876443211112335766654 45555566655 6888998776543 231 12346888888
Q ss_pred eCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeee
Q 007306 413 SLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQL 492 (608)
Q Consensus 413 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~ 492 (608)
.++|.+.+ |+. +-+..+|..+.+.. .+. ...........|.++...+++..|.++.++.+..+|..+++... +
T Consensus 154 d~~g~lWi-gt~-~Gl~~~~~~~~~~~---~~~-~~~~~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~-~ 226 (758)
T 3ott_A 154 TKDNQIYV-GTY-NGLCRYIPSNGKFE---GIP-LPVHSSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQ-T 226 (758)
T ss_dssp CTTCCEEE-EET-TEEEEEETTTTEEE---EEC-CCCCTTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEE-E
T ss_pred cCCCCEEE-EeC-CCHhhCccCCCceE---Eec-CCCccccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEe-c
Confidence 88887665 444 45778887764321 111 11110000135888888887776555544578899987665322 2
Q ss_pred cCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCce
Q 007306 493 VPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLEL 532 (608)
Q Consensus 493 ~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~ 532 (608)
... ....|.++....+|.+.+ |+. +-+.+++..+++.
T Consensus 227 ~~l-~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 227 EAF-HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPL 263 (758)
T ss_dssp EEE-EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCC
T ss_pred cCC-CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcE
Confidence 111 134588888887877555 444 4588898877654
No 338
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.02 E-value=0.9 Score=43.26 Aligned_cols=176 Identities=9% Similarity=0.004 Sum_probs=86.1
Q ss_pred EEEEEcCCCceeeE--ecCCCCCeEEEEEcCCC-eEEEEeCC-------CcEEEEeCCCCceEEE--eeCccccEEEEEE
Q 007306 345 ISIFSLETFQTLAT--FANPPPIATYFILLPQD-LFAFGFDD-------SSILVHCPCTKKTKAK--LKGHQNRITCLAY 412 (608)
Q Consensus 345 i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d-------~~i~vwd~~~~~~~~~--~~~~~~~v~~~~~ 412 (608)
+.+||..+.+-... +.........+.+ ++ .++.|+.+ ..+.+||+.+.+.... +......- +++.
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~ 156 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS 156 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE
T ss_pred EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE
Confidence 67788876554322 1111111222222 56 66666653 3588899987754332 11111111 1222
Q ss_pred eCCCCEEEEEcC------CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC-----CcEEE
Q 007306 413 SLSLNVLVSSGA------DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-----GQIDV 480 (608)
Q Consensus 413 ~~~~~~l~s~~~------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d-----~~i~i 480 (608)
.+++.++.|+. -..+.+||+.+.+-. .+....... ..-..+.+ +++.++. |.+ ..+.+
T Consensus 157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 226 (318)
T 2woz_A 157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMKTPR----SMFGVAIH--KGKIVIAGGVTEDGLSASVEA 226 (318)
T ss_dssp -ETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCSSCC----BSCEEEEE--TTEEEEEEEEETTEEEEEEEE
T ss_pred -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCCCCc----ccceEEEE--CCEEEEEcCcCCCCccceEEE
Confidence 36777777764 245889999875422 111111111 11122222 4555555 432 35789
Q ss_pred EECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcC--------------CeEEEEeCCCCceeEE
Q 007306 481 YEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKS--------------GHVKVFDTSTLELRCQ 535 (608)
Q Consensus 481 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d--------------g~i~iwd~~~~~~~~~ 535 (608)
||..+.+-...-..+...... ++ ...++++++.|+.+ ..+.+||+.+.+-...
T Consensus 227 yd~~~~~W~~~~~~p~~r~~~-~~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 227 FDLKTNKWEVMTEFPQERSSI-SL-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EETTTCCEEECCCCSSCCBSC-EE-EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EECCCCeEEECCCCCCcccce-EE-EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 998876533221111111111 22 23456777777653 4588889888765443
No 339
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.95 E-value=0.29 Score=47.69 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=79.4
Q ss_pred CCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCc-eEEEee---CccccEEEEEEeCC---CCEEEEEcC----C----Cc
Q 007306 363 PPIATYFILLPQDLFAFGFDDSSILVHCPCTKK-TKAKLK---GHQNRITCLAYSLS---LNVLVSSGA----D----AQ 427 (608)
Q Consensus 363 ~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~----d----~~ 427 (608)
-.....++|.|+|.|+++..++.|+++|. +++ .+..+. ........++++|+ +..|.++.. + ..
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 34567899999994455566799999974 454 222211 12356889999997 444444332 3 56
Q ss_pred EEEEECCCC--ceecccce-eeeeccCCCCccceEEEEEcCCCCEEEE-EeC-------------CcEEEEECCCCce--
Q 007306 428 LCVWDAVGW--KKLCSKFL-HSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE-------------GQIDVYEAPTLNH-- 488 (608)
Q Consensus 428 i~vwd~~~~--~~~~~~~~-~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d-------------~~i~iwd~~~~~~-- 488 (608)
|..|+.... .....+.+ ..+..+.. .....++|.|||.+.++ +.. +.|.-++.. ++.
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~---h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~ 182 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYI---HNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPA 182 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSS---CCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCC---cCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCC
Confidence 777777653 11111111 11221111 12457999999987666 321 345555543 321
Q ss_pred ------eeeecCCCCCCCeEEEEEec-CCCEEEE
Q 007306 489 ------TSQLVPDKMDLPITYATYSC-DGKCIYV 515 (608)
Q Consensus 489 ------~~~~~~~~~~~~v~~~~~s~-~~~~l~s 515 (608)
...+.. + ......++|+| +|.++++
T Consensus 183 ~npf~~~~i~a~-G-~rnp~Gla~d~~~g~l~v~ 214 (354)
T 3a9g_A 183 DNPFPNSPIWSY-G-HRNPQGIDWHRASGVMVAT 214 (354)
T ss_dssp TSSSTTCCEEEE-C-CSCCCEEEECTTTCCEEEE
T ss_pred CCCCCCCcEEEE-c-cCCcceEEEeCCCCCEEEE
Confidence 111211 1 23456799999 6665554
No 340
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.80 E-value=1.8 Score=43.54 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=62.3
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC--CCccceEEEEEcCC---CCEEEEE--e---
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV--PETTIVNHIQFHPD---QIHLLSI--H--- 474 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~---~~~l~~~--~--- 474 (608)
.....++|.|+|+++++-...+.|++++..++... .+..+..... ........|+|+|+ +..|+++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~---~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVK---TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe---EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 45679999999998776554457888876543321 1111111100 00146789999996 5566553 2
Q ss_pred ---------CCcEEEEECCCC-------ceee-eecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 475 ---------EGQIDVYEAPTL-------NHTS-QLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 475 ---------d~~i~iwd~~~~-------~~~~-~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
...|.-|+...+ +.+. .+.. ........++|.|||.+.++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEEC
Confidence 235666665322 1111 1221 1234578999999998777654
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.64 E-value=1.8 Score=43.63 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=59.8
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCCCceE--EEeeC------ccccEEEEEEeCC---CCEE-EEEcC-----
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPCTKKTK--AKLKG------HQNRITCLAYSLS---LNVL-VSSGA----- 424 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l-~s~~~----- 424 (608)
-...+.++|.|+| ++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..| ++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999 5555443347999987655432 22221 2356779999995 4444 44332
Q ss_pred -------CCcEEEEECCCCc--eeccccee-eeeccCCCCccceEEEEEcCCCCEEEE
Q 007306 425 -------DAQLCVWDAVGWK--KLCSKFLH-SFQTGLVPETTIVNHIQFHPDQIHLLS 472 (608)
Q Consensus 425 -------d~~i~vwd~~~~~--~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~~~~l~~ 472 (608)
...|.-|+..... ......+. .+..... .....|+|.|||.+.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEE
Confidence 2345556554321 11111111 1221111 24678999999987776
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.62 E-value=3.2 Score=45.01 Aligned_cols=318 Identities=9% Similarity=-0.029 Sum_probs=166.5
Q ss_pred CeEEEeecCCeEEEeeccCCCCCCceeeEe-ecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcceeeecccc
Q 007306 223 DSAVCAKSLEKSVNLKLQLINEPSECRTLL-LPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSLEEENVN 301 (608)
Q Consensus 223 ~~l~~~~~d~~i~iWd~~~~~~~~~~~~~~-l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~~~~~~~ 301 (608)
..|..++.+ -+..+|..+ ..+..+. .........|.++...++|...+ |+.+| +..++..+...
T Consensus 113 g~lWigt~~-Gl~~~~~~~----~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~-------- 177 (758)
T 3ott_A 113 DTLWLGALN-GLYTYQLQS----RKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKF-------- 177 (758)
T ss_dssp TEEEEEETT-EEEEEETTT----CCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEE--------
T ss_pred CcEEEEcCC-cceeEeCCC----CeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCce--------
Confidence 345556655 577777652 3444331 00011245788888888888554 45444 55555444322
Q ss_pred eeeEEeeCCCCeeeeccccCCCCCCeEEEEEe--CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEE
Q 007306 302 MESQLYQPSSKLVMTNDIAADPKDSISCFALR--GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAF 379 (608)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 379 (608)
..+..... .......|.++... +..|..|.++-+..+|..+++...........|.++...++|.|..
T Consensus 178 ---~~~~~~~~-------~~~~~~~i~~i~~d~~~~~lWigt~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 247 (758)
T 3ott_A 178 ---EGIPLPVH-------SSQSNLFVNSLLEDTTRQCVWIGTEGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA 247 (758)
T ss_dssp ---EEECCCCC-------TTCSSCCEEEEEEETTTTEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE
T ss_pred ---EEecCCCc-------cccccceeEEEEEECCCCEEEEEECCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE
Confidence 00110000 00012347788776 5656666655688888877654322111234577888777775555
Q ss_pred EeCCCcEEEEeCCCCceEEEee-------CccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCC
Q 007306 380 GFDDSSILVHCPCTKKTKAKLK-------GHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLV 452 (608)
Q Consensus 380 ~~~d~~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 452 (608)
|+. +-+.+++..+++...... -....|.++....+|.+-+ |+..| +.++.... .. .............
T Consensus 248 gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~-~~-~~~~~~~~~~~~~ 322 (758)
T 3ott_A 248 GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS-AL-QFIPISQITGTGD 322 (758)
T ss_dssp EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC--C-EEEEHHHHSCSCC
T ss_pred EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC-ce-eEEecccCCCCCC
Confidence 664 468889887665432211 0234588988888887554 45555 55543322 10 0000000000000
Q ss_pred CCccceEEEEEcCCCCEEEEEeCCcEEEEECCCCc--eeeeecCC-----CCCCCeEEEEEecCCCEEEEEEcCCeEEEE
Q 007306 453 PETTIVNHIQFHPDQIHLLSIHEGQIDVYEAPTLN--HTSQLVPD-----KMDLPITYATYSCDGKCIYVSCKSGHVKVF 525 (608)
Q Consensus 453 ~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~--~~~~~~~~-----~~~~~v~~~~~s~~~~~l~sg~~dg~i~iw 525 (608)
...|.++.-.++|.+-+.. .+.+..++..++. ....+... -....|.++.-.++|.+.+ |+ ++-|..|
T Consensus 323 --~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~ 397 (758)
T 3ott_A 323 --GNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRY 397 (758)
T ss_dssp --CCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEE
T ss_pred --CceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhc
Confidence 1468889888888776665 4457777765532 11122110 0134688888888887544 44 4579999
Q ss_pred eCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 526 DTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 526 d~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
|..+++........ ..+. .....+.++...+ ++ .|-.|+..+-|.+++..
T Consensus 398 ~~~~~~~~~~~~~~---~~~~-~~~~~v~~i~~d~-~g-~lWigT~~~Gl~~~~~~ 447 (758)
T 3ott_A 398 DYATRQFIHYNIVD---NTGT-YNTNWTYYIFEDT-AG-QLWISTCLGGIFVVDKH 447 (758)
T ss_dssp ETTTTEEEEEEEEC---CC---CBSSSEEEEEECT-TS-EEEEEESSSCEEEEEHH
T ss_pred CcCCCcEEEeecCC---CcCC-CCCceEEEEEEcC-CC-CEEEEECCCceEEEccc
Confidence 99887643321110 0000 0112233666655 44 45556666667888754
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.48 E-value=1.9 Score=43.83 Aligned_cols=240 Identities=9% Similarity=0.060 Sum_probs=132.6
Q ss_pred EEEEeCCCcEEEEecCCCcceeeecccceeeEEeeCC--CC--------eeeec--cccCCCCCCeEEEEEe-----CCE
Q 007306 274 LVALTQTATHKLWKWQSNKQSLEEENVNMESQLYQPS--SK--------LVMTN--DIAADPKDSISCFALR-----GSH 336 (608)
Q Consensus 274 l~s~s~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~--~~~~~~~~~v~~v~~s-----~~~ 336 (608)
+.||+..|.++|+-+.+.+.+.. +-+|++. +| .++.. .+..+. .--..+++. |++
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~-------IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD-~HHp~~S~tdg~yDGry 144 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMR-------IPVFNVDSATGWGLTNESRHIMGDSAKFLNGD-CHHPHISMTDGKYDGKY 144 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEE-------ECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCC-CCCCEEEEETTEEEEEE
T ss_pred EeecCcCceEEEEecCCcceEEE-------eecccCCCCcccCCchhHHHHHhcCCCccCCC-cCCCcccccCCeeeeEE
Confidence 67788899999999988877544 1112111 11 11100 000010 001234444 678
Q ss_pred EEEEe--CCcEEEEEcCCCceeeEecC-CCCCeEEEEEc--CCC-eEEEEeC-------CCcE---------EE---EeC
Q 007306 337 LFSAS--GGKISIFSLETFQTLATFAN-PPPIATYFILL--PQD-LFAFGFD-------DSSI---------LV---HCP 391 (608)
Q Consensus 337 l~s~~--d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~-~l~~~~~-------d~~i---------~v---wd~ 391 (608)
|+.-. +..|-..++...++-+.+.- ....+..+.+- |+. +++.++. ||.. .+ .|.
T Consensus 145 lfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~ 224 (638)
T 3sbq_A 145 LFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDA 224 (638)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEET
T ss_pred EEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcC
Confidence 88887 57888899999888777763 34677777775 555 7776653 2221 01 122
Q ss_pred CCCceEEEeeCccccEEEEEEeCCCCEEEEEcCCC---------------cEEEEECCC-------Cce--ec--c----
Q 007306 392 CTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGADA---------------QLCVWDAVG-------WKK--LC--S---- 441 (608)
Q Consensus 392 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---------------~i~vwd~~~-------~~~--~~--~---- 441 (608)
.+.+....+.- .+....+...++|.+.++.+.+. .+.++|... ++. .. .
T Consensus 225 ~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~Vi 303 (638)
T 3sbq_A 225 ETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVL 303 (638)
T ss_dssp TTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred CccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEE
Confidence 22222111110 11222344567777777654321 244554421 110 00 0
Q ss_pred ----------cceeeeeccCCCCccceEEEEEcCCCCEEEEE--eCCcEEEEECCCCce-------------eeeecCCC
Q 007306 442 ----------KFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI--HEGQIDVYEAPTLNH-------------TSQLVPDK 496 (608)
Q Consensus 442 ----------~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~--~d~~i~iwd~~~~~~-------------~~~~~~~~ 496 (608)
..+..++.. .....+.++|||++++++ .+.++.++|+++... +....
T Consensus 304 D~~~~~~~~~~~~~~iP~p-----ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--- 375 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVP-----KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--- 375 (638)
T ss_dssp ECSCBTTBCCSSEEEEEES-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB---
T ss_pred ccccccccCCceEEEEeCC-----CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc---
Confidence 011101111 234468899999999994 688999999874211 11221
Q ss_pred CCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 497 MDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 497 ~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
-.-.....+|.++|....+-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2456788999999955555668999999998753
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.45 E-value=1.3 Score=47.64 Aligned_cols=195 Identities=11% Similarity=0.069 Sum_probs=101.9
Q ss_pred CCEEEEEe-C----CcEEEEEcCCCceeeEe-c-----CCCC-CeEEEEEcC-CC-eEEEEeCCC------cEEEEeCCC
Q 007306 334 GSHLFSAS-G----GKISIFSLETFQTLATF-A-----NPPP-IATYFILLP-QD-LFAFGFDDS------SILVHCPCT 393 (608)
Q Consensus 334 ~~~l~s~~-d----~~i~vwd~~~~~~~~~~-~-----~~~~-~v~~~~~~~-~~-~l~~~~~d~------~i~vwd~~~ 393 (608)
+..++.|+ + ..+.+||..+++-...- . .... .-.+++..+ ++ .++.|+.++ .+.+||+.+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 66666666 3 46888998876544332 1 1111 112333333 67 777777543 588999988
Q ss_pred CceEEEeeCccccE-EEEEEeCCCCEEEEEcCCC--cEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC-CCE
Q 007306 394 KKTKAKLKGHQNRI-TCLAYSLSLNVLVSSGADA--QLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD-QIH 469 (608)
Q Consensus 394 ~~~~~~~~~~~~~v-~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~-~~~ 469 (608)
.+....-....... .+++...+++.++.|+.++ .+.+||..+..-.........+... ..-..+.+..+ ++.
T Consensus 478 ~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 478 REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPVSKQG 553 (695)
T ss_dssp TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETTTTEE
T ss_pred CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCCCCEE
Confidence 65433211111111 1222324788888888655 6899999875422111100011111 12224555655 555
Q ss_pred EEEE-e--C-----CcEEEEECCCCce-----eeeecC--CCCCCCeEEEEEecCCCEEEEEEcC--------CeEEEEe
Q 007306 470 LLSI-H--E-----GQIDVYEAPTLNH-----TSQLVP--DKMDLPITYATYSCDGKCIYVSCKS--------GHVKVFD 526 (608)
Q Consensus 470 l~~~-~--d-----~~i~iwd~~~~~~-----~~~~~~--~~~~~~v~~~~~s~~~~~l~sg~~d--------g~i~iwd 526 (608)
++.| . + +.+.+||+.+... -..+.. ....... +++...+++.++.|+.+ ..|.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 5554 3 2 3589999887661 111111 0001112 23333447777777743 4699999
Q ss_pred CCCCcee
Q 007306 527 TSTLELR 533 (608)
Q Consensus 527 ~~~~~~~ 533 (608)
..+.+-.
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9987654
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.41 E-value=1.6 Score=40.70 Aligned_cols=224 Identities=11% Similarity=0.021 Sum_probs=117.0
Q ss_pred CCeEEEEEe-CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCc
Q 007306 325 DSISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGH 403 (608)
Q Consensus 325 ~~v~~v~~s-~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 403 (608)
..|..++.. ...++.. ||.|..|-....-.+..-......|..++......++. . ||.|+.|-....-.+..-..-
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 356666666 4444444 99999998654222111111123566666654443333 4 899999975532111100011
Q ss_pred cccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEEC
Q 007306 404 QNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEA 483 (608)
Q Consensus 404 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~ 483 (608)
...|..++...+.. +.-. ||.|+.|-....-.. .+. .... ..|..++...+...+ .. ||.++.|-.
T Consensus 101 ~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gql---g~~---~~~~---~~i~~i~~G~~~~~~-l~-~G~v~~wG~ 166 (282)
T 3qhy_B 101 RSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQT---TVP---AEAQ---SGVTALDGGVYTALA-VK-NGGVIAWGD 166 (282)
T ss_dssp SSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTT---SCC---GGGG---SSEEEEEECSSEEEE-EE-TTEEEEEEC
T ss_pred CCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcC---CCC---ccCC---CCeEEEEcccCEEEE-EE-CCEEEEecC
Confidence 24677777765433 3334 999999976542111 111 1111 357777766543332 24 899999986
Q ss_pred CCCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCC
Q 007306 484 PTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEP 563 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~ 563 (608)
.....+.. .. .-...|..++...+.. ++. .||.|+.|-......+..-. . . ... +..++-.. .
T Consensus 167 n~~gqlg~-p~-~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~-~-----~--~~~--v~~i~~G~--~ 229 (282)
T 3qhy_B 167 NYFGQTTV-PA-EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPT-E-----A--LSG--VSAIASGE--W 229 (282)
T ss_dssp CTTSTTSC-CG-GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCG-G-----G--GSS--CCEEEECS--S
T ss_pred CCCCCCCC-ce-ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCc-c-----c--CCC--ceEEEcCC--C
Confidence 54222111 10 0134577776654433 333 59999999876532222100 0 0 112 33666544 2
Q ss_pred CEEEEEeCCCcEEEEeCCCCc
Q 007306 564 NRIALGLTNGRVHVIEPLESE 584 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~~ 584 (608)
..++. . ||.|+.|--....
T Consensus 230 h~~al-~-~g~v~~wG~n~~g 248 (282)
T 3qhy_B 230 YSLAL-K-NGKVIAWGSSRTA 248 (282)
T ss_dssp CEEEE-E-TTEEEEESTTCCC
T ss_pred EEEEE-E-CCEEEEecCCCCc
Confidence 33333 3 9999999876543
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.15 E-value=2.2 Score=40.23 Aligned_cols=242 Identities=6% Similarity=0.014 Sum_probs=122.0
Q ss_pred ecCCCCeEEEeec--CCeEEEeeccCCCCCCceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCc----EEEEecCCC
Q 007306 218 SLPDADSAVCAKS--LEKSVNLKLQLINEPSECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTAT----HKLWKWQSN 291 (608)
Q Consensus 218 ~s~dg~~l~~~~~--d~~i~iWd~~~~~~~~~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~----i~iw~~~~~ 291 (608)
++++|.+++.... ++.+...+.+. .....+. .+ .+--++++|.+|+-+..... ..+|..
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg----~~~~~l~------~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~--- 85 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDG----SNIHKLS------ND--TAMYINADKNYVYYVRNNNQKITSQTFFSY--- 85 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTS----CSCEEEE------EE--EEEEEEECSSEEEEEEECC------CCSSC---
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCC----CCCEEcc------CC--ceeeEEEcCCEEEEEECCCCcccccceecc---
Confidence 6778888888763 45555555543 2233221 22 23456899999988765421 011100
Q ss_pred cceeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEEeCCEEEEEe---C--CcEEEEEcCCCceeeEecCCCCCe
Q 007306 292 KQSLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFALRGSHLFSAS---G--GKISIFSLETFQTLATFANPPPIA 366 (608)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~l~s~~---d--~~i~vwd~~~~~~~~~~~~~~~~v 366 (608)
....+...+...+..... .......++..++.|+-.. + ..|...++.. .....+..+..
T Consensus 86 --------n~~~Iy~i~~dg~~~~~l-----~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~-- 149 (302)
T 3s25_A 86 --------DRNSLCRIKRNGHGSTVL-----DPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL-- 149 (302)
T ss_dssp --------CSEEEEEEETTSCCCEEE-----ECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC--
T ss_pred --------CCCeEEEEeCCCCcceEe-----ecCCccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc--
Confidence 001112223333321111 1122223333377666554 3 4555566653 33444443332
Q ss_pred EEEEEcCCC-eEEEEeC-CCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCEEEEEcCC--CcEEEEECCCCceeccc
Q 007306 367 TYFILLPQD-LFAFGFD-DSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNVLVSSGAD--AQLCVWDAVGWKKLCSK 442 (608)
Q Consensus 367 ~~~~~~~~~-~l~~~~~-d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~~~~~~ 442 (608)
.++++++ .|+-.+. ...|.+.++..+.....+.+ ... ..+.|++.+|+-...+ ..|..-++.....
T Consensus 150 --~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~---- 219 (302)
T 3s25_A 150 --FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP---- 219 (302)
T ss_dssp --CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----
T ss_pred --eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----
Confidence 3457778 5554443 67899999887655444432 222 2356888888776544 3566666665321
Q ss_pred ceeeeeccCCCCccceEEEEEcCCCCEEEEEe---CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 443 FLHSFQTGLVPETTIVNHIQFHPDQIHLLSIH---EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 443 ~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
. .... ..+ ..|+|++++|+.+. .+.|..-++. |...+.+.. ..+. .+++.+.+|+-..
T Consensus 220 --~-~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~----~~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 220 --V-VLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKND-GTGFKELAK----GEFC--NINVTSQYVYFTD 280 (302)
T ss_dssp --E-ECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETT-SCCCEEEEE----SCEE--EEEECSSEEEEEE
T ss_pred --E-EEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECC-CCccEEeeC----Cccc--eEEEeCCEEEEEE
Confidence 1 1111 233 34788898887642 3567777774 444344432 1233 3445555555443
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.37 E-value=3.8 Score=43.86 Aligned_cols=196 Identities=11% Similarity=0.019 Sum_probs=101.3
Q ss_pred CCC-eEEEEeCC----CcEEEEeCCCCceEEEe-e-----Cccc-cEEEEEEeC-CCCEEEEEcCC------CcEEEEEC
Q 007306 373 PQD-LFAFGFDD----SSILVHCPCTKKTKAKL-K-----GHQN-RITCLAYSL-SLNVLVSSGAD------AQLCVWDA 433 (608)
Q Consensus 373 ~~~-~l~~~~~d----~~i~vwd~~~~~~~~~~-~-----~~~~-~v~~~~~~~-~~~~l~s~~~d------~~i~vwd~ 433 (608)
.++ .++.|+.+ ..+.+||+.+++....- . .... .-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 445 66667643 46889998887544322 1 0111 112333443 77788887754 35788998
Q ss_pred CCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeC--CcEEEEECCCCceeeeec---CCCCCCCeEEEEEe
Q 007306 434 VGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHE--GQIDVYEAPTLNHTSQLV---PDKMDLPITYATYS 507 (608)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d--~~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s 507 (608)
.+.+-.. +..++... .-.+++.-.+++.++. |.+ +.+.+||..+..-...-. .+........+.+.
T Consensus 476 ~t~~W~~---~~~~p~~R-----~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 476 KTREWSM---IKSLSHTR-----FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTEEEE---CCCCSBCC-----BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred CCCcEEE---CCCCCCCc-----ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 8743221 11111111 1113333346777776 433 279999998765432211 00011222335556
Q ss_pred cC-CCEEEEEEc--C-----CeEEEEeCCCCce-----eEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCC--
Q 007306 508 CD-GKCIYVSCK--S-----GHVKVFDTSTLEL-----RCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTN-- 572 (608)
Q Consensus 508 ~~-~~~l~sg~~--d-----g~i~iwd~~~~~~-----~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~D-- 572 (608)
.+ ++.++.|+. + +.+.+||+.+... -..+.... +.+. ....++.+ . ++.+++.|+.+
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p--~~~R----~~~~~~~~-~-~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP--LFQR----YGSQIKYI-T-PRKLLIVGGTSPS 619 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG--GGCC----BSCEEEEE-E-TTEEEEECCBCSS
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC--CCCc----ccceEEEe-C-CCEEEEECCccCC
Confidence 55 667777765 2 4689999988772 11111100 0010 11112333 2 36778888743
Q ss_pred ------CcEEEEeCCCCc
Q 007306 573 ------GRVHVIEPLESE 584 (608)
Q Consensus 573 ------g~v~iW~~~~~~ 584 (608)
..|.+||+.+.+
T Consensus 620 ~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CCCCTTTSEEEEETTTTE
T ss_pred CCCCCCCeEEEEECCCCe
Confidence 468899988764
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.13 E-value=5.8 Score=37.30 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=90.6
Q ss_pred cEEEEEcCCCceeeEecCCCCCeEEEEEcCCC-eEEEEe----CCCcEEEEeCCCCceEEEeeCccccEEEEEEeCCCCE
Q 007306 344 KISIFSLETFQTLATFANPPPIATYFILLPQD-LFAFGF----DDSSILVHCPCTKKTKAKLKGHQNRITCLAYSLSLNV 418 (608)
Q Consensus 344 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 418 (608)
.|+..++..++... +.... +..|++++ .|+-.. .+..|...++.... ...+..+.. ..++|+++.
T Consensus 89 ~Iy~i~~dg~~~~~-l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 89 SLCRIKRNGHGSTV-LDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEETTSCCCEE-EECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE
T ss_pred eEEEEeCCCCcceE-eecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE
Confidence 46666776554322 22111 33677888 666554 34567777776443 334433322 456788888
Q ss_pred EEEEcC-CCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE-eC--CcEEEEECCCCceeeeecC
Q 007306 419 LVSSGA-DAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI-HE--GQIDVYEAPTLNHTSQLVP 494 (608)
Q Consensus 419 l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~ 494 (608)
|.-.+. ...|.+-++..... +. +..+ .. ...++|++.+|+-. .+ ..|..-++.... ...+.
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~---~~---l~~~------~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt- 223 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSE---AL---FYDC------NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT- 223 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEE---EE---EECS------CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-
T ss_pred EEEEeCCCceEEEEECCCCCE---EE---EeCC------Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-
Confidence 886665 57788888876432 11 2222 12 23466999998874 22 357777775443 34443
Q ss_pred CCCCCCeEEEEEecCCCEEEEEEc--CCeEEEEeCCCCc
Q 007306 495 DKMDLPITYATYSCDGKCIYVSCK--SGHVKVFDTSTLE 531 (608)
Q Consensus 495 ~~~~~~v~~~~~s~~~~~l~sg~~--dg~i~iwd~~~~~ 531 (608)
...+ ..|+|++++|+.++. .+.|..-++....
T Consensus 224 ---~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 224 ---EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp ---CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred ---CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 2233 348899999987643 3567777766543
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=93.07 E-value=6.7 Score=37.85 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=40.0
Q ss_pred ccEEEEEEeC-------CCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE
Q 007306 405 NRITCLAYSL-------SLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 405 ~~v~~~~~~~-------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 473 (608)
..+..++|.. +|.++++....+.|...++..++...... +..+.. ..+..+++.|||.+.++.
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~---~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTDRG---QRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGGGC---CCEEEEEECTTSCEEEEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccCCC---CceeEEEECCCCcEEEEE
Confidence 3567788864 46777777777888888877543221111 222212 468899999999866654
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.73 E-value=8.4 Score=39.23 Aligned_cols=234 Identities=13% Similarity=0.058 Sum_probs=126.9
Q ss_pred EEEEe-CCcEEEEEcCCCceeeEecCCC-------------------------CCe--EEEEEc---CCC-eEEEEe-CC
Q 007306 337 LFSAS-GGKISIFSLETFQTLATFANPP-------------------------PIA--TYFILL---PQD-LFAFGF-DD 383 (608)
Q Consensus 337 l~s~~-d~~i~vwd~~~~~~~~~~~~~~-------------------------~~v--~~~~~~---~~~-~l~~~~-~d 383 (608)
+.+|+ .|+|+|+-+.+++.++.+.-.. +.. ..+++. -|| +++.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 55666 8999999998888877663110 111 122232 244 444444 45
Q ss_pred CcEEEEeCCCCceEEEeeC-ccccEEEEEEe--CCCCEEEEEcC-------CCcEEEEECCCCceecccceeeeeccCCC
Q 007306 384 SSILVHCPCTKKTKAKLKG-HQNRITCLAYS--LSLNVLVSSGA-------DAQLCVWDAVGWKKLCSKFLHSFQTGLVP 453 (608)
Q Consensus 384 ~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~s~~~-------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 453 (608)
..|-..+++.-++-+.+.- ....+..+.|- |+..+++.++. ||.. ..+...+.. .+.+...+...
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y---~~f~~iD~~tm 227 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSY---TMYNAIDAETM 227 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEE---EEEEEEETTTC
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhc---eEEEEEcCCcc
Confidence 5677778877776665543 44567788875 77888887765 2221 101111110 11101111110
Q ss_pred C-------ccceEEEEEcCCCCEEEE-EeCC---------------cEEEEECC-------CCc-------eeeeecCCC
Q 007306 454 E-------TTIVNHIQFHPDQIHLLS-IHEG---------------QIDVYEAP-------TLN-------HTSQLVPDK 496 (608)
Q Consensus 454 ~-------~~~v~~v~~sp~~~~l~~-~~d~---------------~i~iwd~~-------~~~-------~~~~~~~~~ 496 (608)
. .+....+..+++|++.++ +.+. .+.++++. .|+ -+..+....
T Consensus 228 ~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~ 307 (638)
T 3sbq_A 228 EMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRK 307 (638)
T ss_dssp SEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSC
T ss_pred EEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccc
Confidence 0 012223555778888777 4221 26666642 111 111221111
Q ss_pred -------------CCCCeEEEEEecCCCEEEEEEc-CCeEEEEeCCCCce---------eEEEeceeeccCCCccccccc
Q 007306 497 -------------MDLPITYATYSCDGKCIYVSCK-SGHVKVFDTSTLEL---------RCQINLTAYAQPGTISLELYP 553 (608)
Q Consensus 497 -------------~~~~v~~~~~s~~~~~l~sg~~-dg~i~iwd~~~~~~---------~~~~~~~~~~~~g~~~~~v~~ 553 (608)
-......+.++|||++++.++. +.++.++|++.-.. ...+... ...| .-.
T Consensus 308 ~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae--~e~G-----lGP 380 (638)
T 3sbq_A 308 KDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGE--PELG-----LGP 380 (638)
T ss_dssp BTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEEC--CBCC-----SCE
T ss_pred ccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEee--ccCC-----Ccc
Confidence 0233455788999999887654 78999999884211 0111100 0112 225
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 007306 554 LVIAAHPLEPNRIALGLTNGRVHVIEPLES 583 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s~Dg~v~iW~~~~~ 583 (608)
...+|.+ +|+-..|.--|..|.-|++...
T Consensus 381 lHt~Fd~-~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 381 LHTTFDG-RGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEECS-SSEEEEEETTTTEEEEEEHHHH
T ss_pred cEEEECC-CCceEeeeeecceEEEEeccHH
Confidence 6799999 7866677779999999999764
No 351
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=91.07 E-value=12 Score=36.35 Aligned_cols=185 Identities=10% Similarity=0.088 Sum_probs=102.0
Q ss_pred cEEEEEcCCC--ceeeEecCC------CCCeEEEEEc---CC----C-e-EEEEeCCCcEEEEeCCCCceEEEeeCcccc
Q 007306 344 KISIFSLETF--QTLATFANP------PPIATYFILL---PQ----D-L-FAFGFDDSSILVHCPCTKKTKAKLKGHQNR 406 (608)
Q Consensus 344 ~i~vwd~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~-~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 406 (608)
.|.+||+.++ +.++++.-+ ...+..+.+. |+ + + .++-...+.|.|+|+.+++.-+.+ |..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~--~~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVT--HPT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEE--CGG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEc--cCC-
Confidence 5778999998 888877632 2346777776 22 3 3 344445678999999999877655 322
Q ss_pred EEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCC----CCEEEEEeCCcEEEEE
Q 007306 407 ITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPD----QIHLLSIHEGQIDVYE 482 (608)
Q Consensus 407 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~----~~~l~~~~d~~i~iwd 482 (608)
|.|+.....+. +|.-.-| . ..+..|+++|+ ++.|+-+.=..-++|.
T Consensus 201 -----~~pd~~~~~~i--~G~~~~~-------------~----------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~ 250 (381)
T 3q6k_A 201 -----FKAERPTKFDY--GGKEYEF-------------K----------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS 250 (381)
T ss_dssp -----GSCCSCEEEEE--TTEEEEE-------------C----------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred -----CccccCcceEE--CCEEeEe-------------c----------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence 34441111111 1211111 1 35789999998 7888875322333444
Q ss_pred CCC-----C---ceeeeecCCCCCCCeEEEEEe-cCCCEEEEEEcCCeEEEEeCCC-C---ceeEEEeceeeccCCCccc
Q 007306 483 APT-----L---NHTSQLVPDKMDLPITYATYS-CDGKCIYVSCKSGHVKVFDTST-L---ELRCQINLTAYAQPGTISL 549 (608)
Q Consensus 483 ~~~-----~---~~~~~~~~~~~~~~v~~~~~s-~~~~~l~sg~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~g~~~~ 549 (608)
+.+ . ..++.+-..+....-..++++ .+|..+++--+.+.|..|+..+ . +....+... ..
T Consensus 251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d--------~~ 322 (381)
T 3q6k_A 251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS--------SR 322 (381)
T ss_dssp EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC--------TT
T ss_pred EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC--------CC
Confidence 321 1 112222110001334456775 6787777777889999999876 1 122333211 22
Q ss_pred ccccEEEEEecCCCCEEEEEe
Q 007306 550 ELYPLVIAAHPLEPNRIALGL 570 (608)
Q Consensus 550 ~v~~~~v~~sp~d~~~las~s 570 (608)
-+++..+++.+ ++.+.+..+
T Consensus 323 l~~pd~~~i~~-~g~Lwv~sn 342 (381)
T 3q6k_A 323 FVFGTDISVDS-KGGLWFMSN 342 (381)
T ss_dssp CCSEEEEEECT-TSCEEEEEC
T ss_pred ccccCeEEECC-CCeEEEEEC
Confidence 34556777766 555555443
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.41 E-value=11 Score=34.91 Aligned_cols=183 Identities=9% Similarity=-0.022 Sum_probs=97.3
Q ss_pred CeEEEEEe-CCEEEEEeCCcEEEEEcCCCceeeEecCCCCCeEEEEEcCCCeEEEEeCCCcEEEEeCCCCceEEEeeCcc
Q 007306 326 SISCFALR-GSHLFSASGGKISIFSLETFQTLATFANPPPIATYFILLPQDLFAFGFDDSSILVHCPCTKKTKAKLKGHQ 404 (608)
Q Consensus 326 ~v~~v~~s-~~~l~s~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 404 (608)
.|..++.. ...++. .||.|..|-......+-.-..-...|..++...+. .+.-. ||.|+.|-....-.+..-....
T Consensus 64 ~i~~ia~G~~hs~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~~~~~~ 140 (282)
T 3qhy_B 64 GVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTVPAEAQ 140 (282)
T ss_dssp CCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSCCGGGG
T ss_pred CEEEEEeCCCEEEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCCCccCC
Confidence 56666666 444444 49999999765422111111112457677665554 22233 8999999755421111111123
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEEeCCcEEEEECC
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSIHEGQIDVYEAP 484 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~~d~~i~iwd~~ 484 (608)
..|..++...+.. ++ -. ||.|..|-....-... .+.. .. ..|..++...+...++ .+|.++.|-..
T Consensus 141 ~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-~p~~-----~~---~~v~~i~~G~~hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 141 SGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-VPAE-----AQ---SGVDDVAGGIFHSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp SSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-CCGG-----GG---SSEEEEEECSSEEEEE--ETTEEEEEECC
T ss_pred CCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-Ccee-----cC---CCeEEEEecCCEEEEE--ECCeEEEEECC
Confidence 4577766554332 22 33 7999999765421110 1111 11 3577887766544444 79999999865
Q ss_pred CCceeeeecCCCCCCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCC
Q 007306 485 TLNHTSQLVPDKMDLPITYATYSCDGKCIYVSCKSGHVKVFDTSTL 530 (608)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~ 530 (608)
....+.. .. .....|..++-..+..++++ ||.|+.|-....
T Consensus 207 ~~gqlg~-p~-~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~ 247 (282)
T 3qhy_B 207 RYKQTTV-PT-EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT 247 (282)
T ss_dssp TTSTTCC-CG-GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred CCCCCCC-Cc-ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence 4221111 00 01344666665544333333 999999987654
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.72 E-value=14 Score=35.73 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=67.8
Q ss_pred cceEEEEEc---CC----CCEEEEE--eCCcEEEEECCCCceeeeec----CC--------CC----CCCeEEEEEecC-
Q 007306 456 TIVNHIQFH---PD----QIHLLSI--HEGQIDVYEAPTLNHTSQLV----PD--------KM----DLPITYATYSCD- 509 (608)
Q Consensus 456 ~~v~~v~~s---p~----~~~l~~~--~d~~i~iwd~~~~~~~~~~~----~~--------~~----~~~v~~~~~s~~- 509 (608)
+.+..+++. |+ +.+++.+ ..+.|.++|+.+++.-+... .. +. ...+..+++||+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~ 231 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD 231 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence 467788887 32 3455554 46789999999887544331 10 00 246888899988
Q ss_pred ---CCEEEEEEcCCeEEEEeCCC-----CceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 007306 510 ---GKCIYVSCKSGHVKVFDTST-----LELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHVIEPL 581 (608)
Q Consensus 510 ---~~~l~sg~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~iW~~~ 581 (608)
+++|+-....+ -++|.+.+ ......+... |...........+..+.+|.++++--....|..|+..
T Consensus 232 ~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-----G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~ 305 (381)
T 3q6k_A 232 SEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-----GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQ 305 (381)
T ss_dssp TTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-----EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETT
T ss_pred CCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-----eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCC
Confidence 67777665544 12333321 1111111100 2111011122466653367778887888899999987
Q ss_pred C
Q 007306 582 E 582 (608)
Q Consensus 582 ~ 582 (608)
+
T Consensus 306 ~ 306 (381)
T 3q6k_A 306 K 306 (381)
T ss_dssp S
T ss_pred C
Confidence 5
No 354
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.64 E-value=15 Score=35.22 Aligned_cols=240 Identities=13% Similarity=0.056 Sum_probs=116.8
Q ss_pred CCCceeEeecCCCCeEEEeecCCeEEEeeccCCCCCCceeeE-eecC--CCCCCcEEEEEEeeC----CCEEEEEe--CC
Q 007306 210 NNQSRESTSLPDADSAVCAKSLEKSVNLKLQLINEPSECRTL-LLPD--NSFGGRVVRLIYSHS----GDFLVALT--QT 280 (608)
Q Consensus 210 ~~~~~~~~~s~dg~~l~~~~~d~~i~iWd~~~~~~~~~~~~~-~l~~--~~h~~~V~~~~fsp~----g~~l~s~s--~d 280 (608)
-.....+.|.|||..+++-...|.|++++..+ +....+ .++. .........|+|+|+ +...++-+ .+
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~----g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKT----GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTT----CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCC----CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 34455668999999877776689999988653 222211 1211 113567899999995 44333333 33
Q ss_pred CcEEEEecCCCcceeeecccceeeEEeeCCCCeeeeccc-cCCCCCCeEEEEEe--CCEEEEEeC--------------C
Q 007306 281 ATHKLWKWQSNKQSLEEENVNMESQLYQPSSKLVMTNDI-AADPKDSISCFALR--GSHLFSASG--------------G 343 (608)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~s--~~~l~s~~d--------------~ 343 (608)
+.|.-|.......... .......+++ ... ...|. -..++|. |.+.++.+| |
T Consensus 107 ~~v~R~~~~~~~~~~~--~~~~~~~i~~--------~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G 174 (347)
T 3das_A 107 NRIVRMLYDEKKPSGE--QLGAPDTVFR--------GIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGG 174 (347)
T ss_dssp EEEEEEEBCTTSCTTC--CBCCCEEEEE--------EECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTT
T ss_pred CEEEEEEeCCCCcccc--cCCCcEEEEE--------cCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCC
Confidence 4454454443210000 0000001111 000 01243 3568888 655555432 3
Q ss_pred cEEEEEcCCCc--------eeeEec-CCCCCeEEEEEcCCC-eEEEE-eCCCcEEEEeCCCCc-----------------
Q 007306 344 KISIFSLETFQ--------TLATFA-NPPPIATYFILLPQD-LFAFG-FDDSSILVHCPCTKK----------------- 395 (608)
Q Consensus 344 ~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~-~l~~~-~~d~~i~vwd~~~~~----------------- 395 (608)
.|.-.+.. ++ ....+. ++.. ...++|+|+| ++++- +.++.=.|--+..|.
T Consensus 175 ~IlRi~~d-G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 175 KILRMTPD-GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp CEEEECTT-SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred EEEEEeCC-CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 34444433 22 011122 3333 3478999988 43332 223222222222221
Q ss_pred -eEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE
Q 007306 396 -TKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 396 -~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 473 (608)
++..+..+......++|. +|..++..-..+.|....+...... ... ..+..+.. +.+..|+..|||.+.++.
T Consensus 253 ~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~-~~~-e~~l~~~~---gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAA-ADP-QAFLEGEY---GRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEES-SCC-EEESTTTS---SCEEEEEEEETTEEEEEE
T ss_pred CCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCcee-cce-EEeecCCC---CCccEEEECCCCcEEEEE
Confidence 122222222356677777 4666666666677777776553211 111 11333333 578899999998766663
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=86.30 E-value=38 Score=36.10 Aligned_cols=180 Identities=11% Similarity=-0.012 Sum_probs=92.4
Q ss_pred CcEEEEEcCCC--ceeeEecCCCCCe-EEEEEcCCC-e-----EEEEeC---CCcEEEEeCCC--CceEEEeeCccccEE
Q 007306 343 GKISIFSLETF--QTLATFANPPPIA-TYFILLPQD-L-----FAFGFD---DSSILVHCPCT--KKTKAKLKGHQNRIT 408 (608)
Q Consensus 343 ~~i~vwd~~~~--~~~~~~~~~~~~v-~~~~~~~~~-~-----l~~~~~---d~~i~vwd~~~--~~~~~~~~~~~~~v~ 408 (608)
..|+.|.+-+. +-...+.+....+ .....++++ . +++.+. ...+.+.|... ++... +......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~-- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQK-INMPSDA-- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEE-CCSCTTC--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceE-eecCCcc--
Confidence 46888887654 2334455444443 234456666 3 343332 24566667653 33222 2222211
Q ss_pred EEEEeCCCCEEEEE----------cCCCcEEEEECCCCcee--cccceeeee-ccCCCCccceEEEEEcCCCCEEEE-Ee
Q 007306 409 CLAYSLSLNVLVSS----------GADAQLCVWDAVGWKKL--CSKFLHSFQ-TGLVPETTIVNHIQFHPDQIHLLS-IH 474 (608)
Q Consensus 409 ~~~~~~~~~~l~s~----------~~d~~i~vwd~~~~~~~--~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~l~~-~~ 474 (608)
.+..++++.+++.. ...+.|...|+.++... .....+.+. .... ..+..+.+..+ ..+++ ..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTAN---EVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTT---EEEEEEEECSS-CEEEEEEE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCC---CeEEEEEEECC-EEEEEEEE
Confidence 12344456555532 24677889998764210 001112112 2222 46788899876 34444 45
Q ss_pred CC--cEEEEECCCCc-eeee-ecCCCCCCCeEEEEEecCCCEE-EEEEc---CCeEEEEeCCCCc
Q 007306 475 EG--QIDVYEAPTLN-HTSQ-LVPDKMDLPITYATYSCDGKCI-YVSCK---SGHVKVFDTSTLE 531 (608)
Q Consensus 475 d~--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~~~l-~sg~~---dg~i~iwd~~~~~ 531 (608)
++ .+.++|+.++. .... +..+. .+.+.....++++..+ ++.+. -+.++.+|+. ++
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~ 431 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HE 431 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SC
T ss_pred CCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-Cc
Confidence 55 47788876664 2333 33221 3456666677776544 44333 2788899887 54
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.16 E-value=14 Score=37.06 Aligned_cols=112 Identities=11% Similarity=0.009 Sum_probs=60.7
Q ss_pred ccEEEEEEeCCCC-EEEEEcCCCcEEEEECCCCceecccceeee----eccC-CCCccceEEEEEcCC---CCEEEE--E
Q 007306 405 NRITCLAYSLSLN-VLVSSGADAQLCVWDAVGWKKLCSKFLHSF----QTGL-VPETTIVNHIQFHPD---QIHLLS--I 473 (608)
Q Consensus 405 ~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~----~~~~-~~~~~~v~~v~~sp~---~~~l~~--~ 473 (608)
.....|+|.|+|. .|+++...|.|++++..... . ...+..+ ..+. .........|+|+|+ ..+|++ +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-F-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-C-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-e-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 3567899999996 44456678999999754321 0 0111111 1110 000146789999997 234443 3
Q ss_pred eC------------CcEEEEECCCC----------ceeeeecCCCCCCCeEEEEEecCCCEEEEEEc
Q 007306 474 HE------------GQIDVYEAPTL----------NHTSQLVPDKMDLPITYATYSCDGKCIYVSCK 518 (608)
Q Consensus 474 ~d------------~~i~iwd~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 518 (608)
.+ ..|.-|.+..+ +.+..+........-..++|.|||.+.++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 21 13444655321 22333321122345688999999987766554
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.12 E-value=20 Score=35.95 Aligned_cols=110 Identities=8% Similarity=-0.070 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCC--EEEEEeCCcEEEEECCCCc---eeeeecC---C----CCCCCeEEEEEecC----CCEEEEEEcC-
Q 007306 457 IVNHIQFHPDQI--HLLSIHEGQIDVYEAPTLN---HTSQLVP---D----KMDLPITYATYSCD----GKCIYVSCKS- 519 (608)
Q Consensus 457 ~v~~v~~sp~~~--~l~~~~d~~i~iwd~~~~~---~~~~~~~---~----~~~~~v~~~~~s~~----~~~l~sg~~d- 519 (608)
....|+|.|+|. ++++-..|.|++++..... .+..+.. . ........++|+|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999985 7777788999999753221 2222110 0 11356889999996 4443333321
Q ss_pred -----------CeEEEEeCCCC--------ceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeCCC
Q 007306 520 -----------GHVKVFDTSTL--------ELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNG 573 (608)
Q Consensus 520 -----------g~i~iwd~~~~--------~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg 573 (608)
..|.-|.+..+ .....+... ...+ .|... .++|.| |+.+.++.++.+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~--~~~~--~H~g~--~l~fgp-DG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVA--ELHR--KHLGG--QLLFGP-DGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEE--ESSS--SSCEE--EEEECT-TSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcC--CCCC--cccCC--cEeECC-CCcEEEEeCCCC
Confidence 14545666432 111112111 1112 23333 899999 788777776543
No 358
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=81.14 E-value=1.3 Score=31.89 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhhhcHHHHHHHHHhhcCcc
Q 007306 14 THLITLIMKFLEEENFKESLQALEQESKIF 43 (608)
Q Consensus 14 ~~ivrli~q~L~~~g~~~s~~~L~~Es~~~ 43 (608)
.-|.-||..||+-.||+.|..+++-|+|..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 346789999999999999999999999985
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.47 E-value=11 Score=42.07 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=36.1
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEece
Q 007306 498 DLPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINLT 539 (608)
Q Consensus 498 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 539 (608)
...+.+++..++..++++-+.|+++|+|++.+++++.+....
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeeccc
Confidence 446778888889999999999999999999999988876643
No 360
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=78.35 E-value=41 Score=30.87 Aligned_cols=203 Identities=10% Similarity=0.040 Sum_probs=105.7
Q ss_pred CeEEEEEcCCC-eEEEEeCCCcEEE---EeCCCCceEEEeeCccccEEEEEEeC--CCCEEEEEcCCCcEEEEECCCCce
Q 007306 365 IATYFILLPQD-LFAFGFDDSSILV---HCPCTKKTKAKLKGHQNRITCLAYSL--SLNVLVSSGADAQLCVWDAVGWKK 438 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~~~~~d~~i~v---wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~~~~~~ 438 (608)
.+..+...... .|+.-+..|.++- |++..+.....+. ....|..+.. + +...++..+.+|.++-..+..-.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~- 101 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE- 101 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT-
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh-
Confidence 34343333333 5555566665554 3332221111132 3455666644 4 46789999999999999876532
Q ss_pred eccccee--eeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc-------eeeeecCCCCCCCeEEEEEec
Q 007306 439 LCSKFLH--SFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-------HTSQLVPDKMDLPITYATYSC 508 (608)
Q Consensus 439 ~~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~s~ 508 (608)
.....+. .+.++ ..+..+....+...++. +..|.+..++...-. -+.-+... ....|..+...+
T Consensus 102 ~~~~G~~~i~lkeg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~ 175 (276)
T 3no0_A 102 YKAQGMPIIKLTEG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWN 175 (276)
T ss_dssp TCSTTEECSCCCTT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEES
T ss_pred hhcCCeEEEecCCC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeC
Confidence 1111111 12222 35666655555545554 788888888753211 11112221 246677776666
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCceeEEEe-ceeeccCCCcccccccEEEEEecCCCCEEEEEeCCCcEEE--EeCCC
Q 007306 509 DGKCIYVSCKSGHVKVFDTSTLELRCQIN-LTAYAQPGTISLELYPLVIAAHPLEPNRIALGLTNGRVHV--IEPLE 582 (608)
Q Consensus 509 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~Dg~v~i--W~~~~ 582 (608)
++.+++..+..|.++...+........-. ....... .+. +..+.... +...++..+.+|.+.. +++..
T Consensus 176 ~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~---~~~--lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 176 GEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGT---KDT--LVDLIPIK-EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCS---SSC--EEEEEEES-SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcC---CCc--EEEEEEeC-CCCEEEEEcCCCeEEEeeeCHHH
Confidence 77789999999999988875432211100 0000000 222 22332222 3456777788888877 77654
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=73.28 E-value=35 Score=37.93 Aligned_cols=39 Identities=26% Similarity=0.177 Sum_probs=32.1
Q ss_pred ccEEEEEEeCCCCEEEEEcCCCcEEEEECCCCceecccc
Q 007306 405 NRITCLAYSLSLNVLVSSGADAQLCVWDAVGWKKLCSKF 443 (608)
Q Consensus 405 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 443 (608)
..+.+++..++..++++-+.|+++|+|++.+++......
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356778888888999999999999999999977654433
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=68.23 E-value=89 Score=30.16 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=101.0
Q ss_pred CeEEEEEcC-C-C-eEEEEeCCCcEEEEeCCCCceEEEeeC-------------------ccccEEEEEEeCC-CCEEEE
Q 007306 365 IATYFILLP-Q-D-LFAFGFDDSSILVHCPCTKKTKAKLKG-------------------HQNRITCLAYSLS-LNVLVS 421 (608)
Q Consensus 365 ~v~~~~~~~-~-~-~l~~~~~d~~i~vwd~~~~~~~~~~~~-------------------~~~~v~~~~~~~~-~~~l~s 421 (608)
.|.++++.| + . .+.++...+.|...+-. |+.-..+.. ....+.+|.++|. ...+..
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 477888886 2 4 66666666666655422 322222211 1235788999883 344444
Q ss_pred EcCCCcEEEEECCCCceecccceee-eeccCCC-----CccceEEEEEcCC-CCEEEEEeCCcEEEEECCCCceeeeecC
Q 007306 422 SGADAQLCVWDAVGWKKLCSKFLHS-FQTGLVP-----ETTIVNHIQFHPD-QIHLLSIHEGQIDVYEAPTLNHTSQLVP 494 (608)
Q Consensus 422 ~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~-----~~~~v~~v~~sp~-~~~l~~~~d~~i~iwd~~~~~~~~~~~~ 494 (608)
+..++.|...+-.. +. ...+.. ....+.+ ....+.++.++|+ ...++++..+.|...+- .++.-..+..
T Consensus 195 g~~~ggl~~s~DgG-~t--W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~ 270 (394)
T 3b7f_A 195 GMSSGGVFESTDAG-TD--WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGD 270 (394)
T ss_dssp EEETBEEEEESSTT-SS--CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGG
T ss_pred EECCCCEEEECCCC-CC--ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCC
Confidence 54444444332111 10 011100 0000000 0024889999986 35666665555655543 2333222221
Q ss_pred CCCC---CCeEEEEEec-CCCEEEEEEc-----------CCeEEEEeCCC-CceeEEEeceeeccCCCcccccccEEEEE
Q 007306 495 DKMD---LPITYATYSC-DGKCIYVSCK-----------SGHVKVFDTST-LELRCQINLTAYAQPGTISLELYPLVIAA 558 (608)
Q Consensus 495 ~~~~---~~v~~~~~s~-~~~~l~sg~~-----------dg~i~iwd~~~-~~~~~~~~~~~~~~~g~~~~~v~~~~v~~ 558 (608)
.... ..+..++++| +...|+.+.. ++...+|.... |+.-..+.. -.+....-..+....+++
T Consensus 271 ~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~--glp~~~~~~~~~~~~~~~ 348 (394)
T 3b7f_A 271 AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDR--GLPTDQAWLTVKRQAMTA 348 (394)
T ss_dssp GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECB--TSCCSSCCCCCCTBSEEE
T ss_pred CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCC--CCCCccccceEEEEEEEE
Confidence 1011 4467788876 3344544432 33345565544 333333221 011110000111235788
Q ss_pred ecCCCCEEEEEeCCCcEEEEeCCCCccccccCC
Q 007306 559 HPLEPNRIALGLTNGRVHVIEPLESEVEWGKLP 591 (608)
Q Consensus 559 sp~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~ 591 (608)
+|.++..|..++.++.| |...++...|....
T Consensus 349 ~p~~~~~l~~g~~~g~l--~~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 349 DAHAPVGVYFGTTGGEI--WASADEGEHWQCIA 379 (394)
T ss_dssp CCSSSCCEEEECTTSCE--EEESSTTSBCEEEE
T ss_pred CCCCCCEEEEEeCCCeE--EEECCCCCCceEcc
Confidence 88555667777666654 44455555676543
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=61.95 E-value=21 Score=36.93 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=42.2
Q ss_pred ceEEEEEcCCCCEEEEEeC--------------CcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEE
Q 007306 457 IVNHIQFHPDQIHLLSIHE--------------GQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVS 516 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg 516 (608)
..-.|+|+|.|.++++ .| +.+.+.+..+++..+-+..+ ....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~-eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWIL-TDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEE-ECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEE-ecCCCcccccccccccceEEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 3456999999986555 22 23666677777766555543 47899999999999988876
No 364
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=61.59 E-value=1.1e+02 Score=28.85 Aligned_cols=161 Identities=10% Similarity=0.030 Sum_probs=90.8
Q ss_pred CCCeEEEE-EcC--CC-eEEEEeCCCcEEEEeCCCC-------ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEE
Q 007306 363 PPIATYFI-LLP--QD-LFAFGFDDSSILVHCPCTK-------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVW 431 (608)
Q Consensus 363 ~~~v~~~~-~~~--~~-~l~~~~~d~~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vw 431 (608)
...|..+. ..+ +. .++..+.+|.|+-..+..- ...-.++. .+.+..+........++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 34555543 332 45 8999999999998875432 11122332 3455555555566678888889998888
Q ss_pred ECC--CCcee----cccceeeeeccCCCCccceEEEEEcCCCCEEEE-EeCCcEEEEECCCCc-------eeeeecCCCC
Q 007306 432 DAV--GWKKL----CSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLS-IHEGQIDVYEAPTLN-------HTSQLVPDKM 497 (608)
Q Consensus 432 d~~--~~~~~----~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~-~~d~~i~iwd~~~~~-------~~~~~~~~~~ 497 (608)
... .-... .+...-.+..+ ..|.++...+.+.+++. +..|.++.-.+.... -+..+.....
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~-----d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNID-----DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTT-----CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred ECcccccCcCCcCCCCeeeecCCCC-----CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 776 31110 11111112222 45777766655555555 788888887754222 2222222111
Q ss_pred CCCeEEEEEecCCCEEEEEEcCCeEEEEeCCC
Q 007306 498 DLPITYATYSCDGKCIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 498 ~~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~ 529 (608)
.+.+..+....+...++..+.+|.+.-++...
T Consensus 248 ~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 RGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 34466555555555677777778777777654
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.14 E-value=25 Score=37.12 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=27.6
Q ss_pred cCCCEEEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 508 CDGKCIYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 508 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
.+..++++-+.|.++|+|++.+++++.....
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4578999999999999999999998888765
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=53.54 E-value=47 Score=34.03 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=43.6
Q ss_pred cceEEEEEcCCCCEEEE--Ee-----------CCcEEEEECCCCceeeeecCCCCCCCeEEEEEecCCCEEEEEE
Q 007306 456 TIVNHIQFHPDQIHLLS--IH-----------EGQIDVYEAPTLNHTSQLVPDKMDLPITYATYSCDGKCIYVSC 517 (608)
Q Consensus 456 ~~v~~v~~sp~~~~l~~--~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~ 517 (608)
.....|.|+++|.+.++ +. .+.+..++..+++....+..+ ....++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEE
Confidence 35678999999987773 21 125777777777765544332 246789999999999988774
No 367
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=52.28 E-value=2.1e+02 Score=29.29 Aligned_cols=132 Identities=13% Similarity=0.003 Sum_probs=79.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCcEEEEECCCCceeeeecCCCCC-CCeEEEEEecCCCEEEEEEc--------------CCe
Q 007306 457 IVNHIQFHPDQIHLLSIHEGQIDVYEAPTLNHTSQLVPDKMD-LPITYATYSCDGKCIYVSCK--------------SGH 521 (608)
Q Consensus 457 ~v~~v~~sp~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~sg~~--------------dg~ 521 (608)
.+....-.++|.++.. ....+...|. .++.+..+..+.+. ..-..+...|+|+.|+.+.. +..
T Consensus 208 ~l~~~~g~~nG~l~~g-~G~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~ 285 (571)
T 3elq_A 208 YLMGIRETPRGTFTAV-QGQHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDH 285 (571)
T ss_dssp CCEEEEECTTSCEEEE-EBTEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCE
T ss_pred eEEEEEecCCCCEEEe-cCcEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccE
Confidence 4555555678877664 2345777787 56766665543210 01123555788888876532 346
Q ss_pred EEEEeCCCCceeEEEeceeecc-----------------------CCC------------------cccccccEEEEEec
Q 007306 522 VKVFDTSTLELRCQINLTAYAQ-----------------------PGT------------------ISLELYPLVIAAHP 560 (608)
Q Consensus 522 i~iwd~~~~~~~~~~~~~~~~~-----------------------~g~------------------~~~~v~~~~v~~sp 560 (608)
|...| .+|+.+..+.....+. .|. ..+...++++.+.+
T Consensus 286 I~EVD-~tGeVv~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~ 364 (571)
T 3elq_A 286 ILEVD-KSGRVVDVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDA 364 (571)
T ss_dssp EEEEC-TTSCEEEEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEET
T ss_pred EEEEC-CCCCEEEEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcC
Confidence 77778 8888887766322210 010 01224477999988
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccccCCCC
Q 007306 561 LEPNRIALGLTNGRVHVIEPLESEVEWGKLPFT 593 (608)
Q Consensus 561 ~d~~~las~s~Dg~v~iW~~~~~~~~~~~~~~~ 593 (608)
.++++|+|+-.- .|...+. +++-.|...++.
T Consensus 365 ~dd~~liSsR~~-~I~~Id~-tG~V~W~LGg~~ 395 (571)
T 3elq_A 365 KDDSIILSSRHQ-GVVKIGR-DKQVKWILAPSK 395 (571)
T ss_dssp TTTEEEEEETTT-EEEEEET-TSCEEEEESCST
T ss_pred CCCEEEEECCcc-EEEEEcC-CCcEEEEECCCC
Confidence 555688887666 6666675 788888876664
No 368
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=48.28 E-value=11 Score=31.34 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=34.4
Q ss_pred CcceecchhhhhHHHHHHHHHhhhcHHHHHHH-----HHhhcCccc
Q 007306 4 SKMCIDKDTYTHLITLIMKFLEEENFKESLQA-----LEQESKIFF 44 (608)
Q Consensus 4 ~~~~~~~~~~~~ivrli~q~L~~~g~~~s~~~-----L~~Es~~~~ 44 (608)
..+.++..|+.+-.+-|++||+..||+..+.+ ++.|||+..
T Consensus 5 ~~~~~t~~~~~~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP 50 (159)
T 3ct5_A 5 SNKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINP 50 (159)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc
Confidence 45678889999999999999999999887664 699999643
No 369
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=47.92 E-value=11 Score=19.78 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHhhh
Q 007306 13 YTHLITLIMKFLEEE 27 (608)
Q Consensus 13 ~~~ivrli~q~L~~~ 27 (608)
++|+++||-||-+..
T Consensus 4 MkDvlql~qQy~qsh 18 (26)
T 1kdl_A 4 MKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 357889999986653
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.76 E-value=90 Score=32.01 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=41.4
Q ss_pred CeEEEEEcCCC-eEE-EEeC-----------CCcEEEEeCCCCceEEEeeCc-cccEEEEEEeCCCCEEEEEc
Q 007306 365 IATYFILLPQD-LFA-FGFD-----------DSSILVHCPCTKKTKAKLKGH-QNRITCLAYSLSLNVLVSSG 423 (608)
Q Consensus 365 ~v~~~~~~~~~-~l~-~~~~-----------d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~ 423 (608)
....+.|.++| +.+ +-.. ...|..++..+++....+.+. ...++.++|+||++.|.++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45679999999 433 3221 126778888888876666543 35689999999999877653
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.89 E-value=2e+02 Score=26.96 Aligned_cols=239 Identities=11% Similarity=0.031 Sum_probs=122.5
Q ss_pred CeEEEeecCCeEEEeeccCCCCCC----ceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEe---cCCCccee
Q 007306 223 DSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWK---WQSNKQSL 295 (608)
Q Consensus 223 ~~l~~~~~d~~i~iWd~~~~~~~~----~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~---~~~~~~~~ 295 (608)
..+++.+.+|.|+--.+....... -.....+. ..+.+..+........|+..+..|.+.-.. +....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k---e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~--- 77 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK---QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS--- 77 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC---GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC---
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC---CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCC---
Confidence 356777788888765533100000 00111111 245666666666677777777777665433 21111
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE-Ee----CCEEEEEe-CCcEEEEEcCCCce-------eeEecCC
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA-LR----GSHLFSAS-GGKISIFSLETFQT-------LATFANP 362 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~s----~~~l~s~~-d~~i~vwd~~~~~~-------~~~~~~~ 362 (608)
| ...|..+...+.-.....|.++. .. +.+++..+ +|.++--.+..... ...++.
T Consensus 78 -----------r-~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke- 144 (327)
T 3uc1_A 78 -----------R-TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD- 144 (327)
T ss_dssp -----------S-SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-
T ss_pred -----------c-cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-
Confidence 0 01232222211112344555543 32 46888888 99999888754222 122333
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCC--CC---------ceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEE
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPC--TK---------KTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 430 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~--~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~v 430 (608)
...+..+...... .++..+..|.+..+... .- ...-.+. ....|.++...+++..++..+..|.++.
T Consensus 145 ~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 223 (327)
T 3uc1_A 145 NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKR 223 (327)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEE
Confidence 3344444444444 77777888888777665 21 1111122 2455777766666678889999999998
Q ss_pred EECCCCceecc--cceeeeec-cCCCCccceEEEEE-cCCCCEEEEEeCCcEEEEECC
Q 007306 431 WDAVGWKKLCS--KFLHSFQT-GLVPETTIVNHIQF-HPDQIHLLSIHEGQIDVYEAP 484 (608)
Q Consensus 431 wd~~~~~~~~~--~~~~~~~~-~~~~~~~~v~~v~~-sp~~~~l~~~~d~~i~iwd~~ 484 (608)
-.+........ +-+..+.. ... +.+..+.. .++...++.+.+|.+.-++..
T Consensus 224 t~l~e~~~~~R~~~G~~~~~l~~~~---d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 224 TAIEEYPVQGRGGKGVLTVMYDRRR---GRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEGGGSCBCCTTSCCEESSCCCTTT---CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEHHHccccCcCCCcEEEEEecCCC---CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 87654221111 11111111 101 23444443 344445555788887777764
No 372
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=44.05 E-value=2.8e+02 Score=28.33 Aligned_cols=16 Identities=25% Similarity=0.274 Sum_probs=12.9
Q ss_pred EEEEEcCCCceeeEec
Q 007306 345 ISIFSLETFQTLATFA 360 (608)
Q Consensus 345 i~vwd~~~~~~~~~~~ 360 (608)
+.++|=.+|+.+.++.
T Consensus 231 L~vfdG~TG~~l~~~~ 246 (591)
T 2zux_A 231 LTVFQGSTGKELVTAN 246 (591)
T ss_dssp EEEEETTTCCEEEEEE
T ss_pred EEEEeCCCCCEEeccc
Confidence 7888888888887765
No 373
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=42.82 E-value=2.3e+02 Score=27.07 Aligned_cols=243 Identities=11% Similarity=0.069 Sum_probs=110.7
Q ss_pred CEEEEEe-CCcEEEEEcCC-CceeeEe--cCCCCCeEEEEEcC--CCeEEEEeCCC----cEEEEeCCCCceEEEee---
Q 007306 335 SHLFSAS-GGKISIFSLET-FQTLATF--ANPPPIATYFILLP--QDLFAFGFDDS----SILVHCPCTKKTKAKLK--- 401 (608)
Q Consensus 335 ~~l~s~~-d~~i~vwd~~~-~~~~~~~--~~~~~~v~~~~~~~--~~~l~~~~~d~----~i~vwd~~~~~~~~~~~--- 401 (608)
..|..+. .| +.+++... +..-..+ ......|.++++.| .+.+.+++..| .|...+ +.++.-..+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 3566666 45 55555432 2222221 12345789999998 34555555555 454443 2232211111
Q ss_pred ---C--------ccccEEEEEEeC-C-CCEEEEEcCCCcEEEEECCCCceecccceeeeec-cC-----------CCCcc
Q 007306 402 ---G--------HQNRITCLAYSL-S-LNVLVSSGADAQLCVWDAVGWKKLCSKFLHSFQT-GL-----------VPETT 456 (608)
Q Consensus 402 ---~--------~~~~v~~~~~~~-~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~-----------~~~~~ 456 (608)
. ....|.++++.| + ...+..+...+.|...+-.. +. ...+..... .. .+...
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG-~t--W~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHG-AS--WEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTT-SB--CEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCC-CC--eEECcCccCCccccccccccccCCCCCC
Confidence 0 112577888887 2 44555555556555443221 10 011110000 00 00013
Q ss_pred ceEEEEEcCC-CCEEEE-EeCCcEEEEECCCCceeeeecCC---CC--------CCCeEEEEEecC-CCEEEEEEcCCeE
Q 007306 457 IVNHIQFHPD-QIHLLS-IHEGQIDVYEAPTLNHTSQLVPD---KM--------DLPITYATYSCD-GKCIYVSCKSGHV 522 (608)
Q Consensus 457 ~v~~v~~sp~-~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~---~~--------~~~v~~~~~s~~-~~~l~sg~~dg~i 522 (608)
.+.+|.++|. ...+++ ..++.|...+- .++.-..+... .+ ...+.+++++|+ ...|+.+...+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 5789999984 334444 44554444322 23222222110 00 135889999985 45666666544 5
Q ss_pred EEEeCCCCceeEEEeceeeccCCCcccccccEEEEEecCCCCEEEEEeC-----------CCcEEEEeCCCCccccccC
Q 007306 523 KVFDTSTLELRCQINLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT-----------NGRVHVIEPLESEVEWGKL 590 (608)
Q Consensus 523 ~iwd~~~~~~~~~~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~-----------Dg~v~iW~~~~~~~~~~~~ 590 (608)
+..+- .++.-..+.. ..+.+ ...++.+++++|.+...+..++. ++...||...++...|...
T Consensus 256 ~~s~D-~G~tW~~~~~--~l~~~---~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~ 328 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGD--AMPRE---VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ 328 (394)
T ss_dssp EEEET-TTTEEECGGG--GSCTT---TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE
T ss_pred EEeCC-CCCcceECCC--CCCCC---CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC
Confidence 44432 2332222211 01110 00123377887744444444432 3445677777766667653
No 374
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=41.34 E-value=20 Score=32.53 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHhhhcHHHHHHHHHhhcCccc-c----HHHHHHHHhcCCHHHHHHHHhhcccCCCCC
Q 007306 20 IMKFLEEENFKESLQALEQESKIFF-N----VHRFGEIVMNGEWEKAEKYLSAFTKLDDSN 75 (608)
Q Consensus 20 i~q~L~~~g~~~s~~~L~~Es~~~~-~----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~ 75 (608)
+.+.|++--+..+...++++-.-.- | ...|.=..+.|+|+.|++.|+.+..+++..
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 4566788888888888887755433 3 555666678999999999999875555553
No 375
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=40.16 E-value=3.6e+02 Score=28.54 Aligned_cols=218 Identities=12% Similarity=0.064 Sum_probs=110.2
Q ss_pred CcEEEEEcCCCceee-EecCCCC--------CeEEEEEcCCC-eEEEEe----------CCCcEEEEeCCCC--ceEEEe
Q 007306 343 GKISIFSLETFQTLA-TFANPPP--------IATYFILLPQD-LFAFGF----------DDSSILVHCPCTK--KTKAKL 400 (608)
Q Consensus 343 ~~i~vwd~~~~~~~~-~~~~~~~--------~v~~~~~~~~~-~l~~~~----------~d~~i~vwd~~~~--~~~~~~ 400 (608)
..++++|+.+++.+. .+. ... ....++|..++ .+++.. ....|+.|.+-+. +-...+
T Consensus 156 ~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~ 234 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLF 234 (711)
T ss_dssp EEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEE
T ss_pred eEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEe
Confidence 379999999988764 222 111 11345887555 444321 1246888887664 233345
Q ss_pred eCccccE-EEEEEeCCCC-----EEEEEcCC---CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEE
Q 007306 401 KGHQNRI-TCLAYSLSLN-----VLVSSGAD---AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLL 471 (608)
Q Consensus 401 ~~~~~~v-~~~~~~~~~~-----~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~ 471 (608)
.+....+ .+...+++++ .+++.+.+ ..+.+.|...... .... +..... . .+..+.++.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~-l~~~~~---~---~~~~~~~~~~~~ 304 (711)
T 4hvt_A 235 EVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL---KLQK-INMPSD---A---TLQGSFKEYVFW 304 (711)
T ss_dssp ECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC---EEEE-CCSCTT---C---EEEEEETTEEEE
T ss_pred ccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC---cceE-eecCCc---c---eEeeeECCEEEE
Confidence 4433333 2344556665 24443322 3456666553111 1111 111111 1 223344555555
Q ss_pred EE-----------eCCcEEEEECCCCc-------eeeeecCCCCCCCeEEEEEecCCCEEEEEEcCC--eEEEEeCCCCc
Q 007306 472 SI-----------HEGQIDVYEAPTLN-------HTSQLVPDKMDLPITYATYSCDGKCIYVSCKSG--HVKVFDTSTLE 531 (608)
Q Consensus 472 ~~-----------~d~~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg--~i~iwd~~~~~ 531 (608)
.. ..+.|...|+.++. ....+..+.....+..+.|..+ .++++...++ .|+++++.+++
T Consensus 305 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 305 LLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp ECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred EECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 32 24678899987642 2233223333567788888876 5667777776 46777776664
Q ss_pred -eeEE-EeceeeccCCCcccccccEEEEEecCCCCEEEEEeC---CCcEEEEeCC
Q 007306 532 -LRCQ-INLTAYAQPGTISLELYPLVIAAHPLEPNRIALGLT---NGRVHVIEPL 581 (608)
Q Consensus 532 -~~~~-~~~~~~~~~g~~~~~v~~~~v~~sp~d~~~las~s~---Dg~v~iW~~~ 581 (608)
.... +... + ...+. ....+++++.++++.+. -+.+..+++.
T Consensus 384 ~~~~~~i~lp-----~--~~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 384 WTKPVVLKLP-----Y--QNAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp ECCCEEECCC-----S--TTCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEeccCCC-----C--CeEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 1222 2211 1 11222 44555634455555553 3677788776
No 376
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=39.24 E-value=77 Score=32.78 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=38.3
Q ss_pred cEEEEEEeCCCCEEEEEcCC------------CcEEEEECCCCceecccceeeeeccCCCCccceEEEEEcCCCCEEEEE
Q 007306 406 RITCLAYSLSLNVLVSSGAD------------AQLCVWDAVGWKKLCSKFLHSFQTGLVPETTIVNHIQFHPDQIHLLSI 473 (608)
Q Consensus 406 ~v~~~~~~~~~~~l~s~~~d------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~l~~~ 473 (608)
..-.|+|+|.|.+++.-..+ ..+.+.+..+++ +..+..+... .+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~------~~rf~~~P~g--aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGE------IRRFMVGPIG--CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCC------EEEEEECCTT--CEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCe------EEEEEeCCCC--ccCcCeeECCCCCEEEEE
Confidence 34678999999977765432 234444555433 2223333332 789999999999988874
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.01 E-value=1.3e+02 Score=34.28 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=27.8
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007306 554 LVIAAHPLEPNRIALGLTNGRVHVIEPLESEVEW 587 (608)
Q Consensus 554 ~~v~~sp~d~~~las~s~Dg~v~iW~~~~~~~~~ 587 (608)
.+++..+ +..++++-+.|+++|||++.++++..
T Consensus 241 vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 241 ISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp SCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred EEeeccC-CccEEEEEeCCCEEEEEECCCCCeEE
Confidence 3666777 67899999999999999999998643
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.71 E-value=47 Score=35.12 Aligned_cols=37 Identities=19% Similarity=0.386 Sum_probs=29.8
Q ss_pred CCeEEEEEeCCEEEEEe-CCcEEEEEcCCCceeeEecC
Q 007306 325 DSISCFALRGSHLFSAS-GGKISIFSLETFQTLATFAN 361 (608)
Q Consensus 325 ~~v~~v~~s~~~l~s~~-d~~i~vwd~~~~~~~~~~~~ 361 (608)
..|.++.+...++++-+ |.++|+|++.+++++.+..-
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34555555578999999 99999999999998887654
No 379
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.44 E-value=2.6e+02 Score=25.83 Aligned_cols=245 Identities=8% Similarity=0.020 Sum_probs=120.8
Q ss_pred CCCCeEEEeecCCeEEEeeccCCCCCC----ceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCccee
Q 007306 220 PDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQSL 295 (608)
Q Consensus 220 ~dg~~l~~~~~d~~i~iWd~~~~~~~~----~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~~~ 295 (608)
|+...+++.+.+|.|+--.+....... -.....+. -.+.+..+........|+..+..|.+.-.....-..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k---e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~-- 75 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK---EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE-- 75 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC-----------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC---CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcC--
Confidence 456678889999999876664311000 11111121 244555555555666777778888765443321100
Q ss_pred eecccceeeEEeeCCCCeeeeccccCCCCCCeEEEEE----e-CCEEEEEe-CCcEEEEEcCCCc-------eeeEecCC
Q 007306 296 EEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFAL----R-GSHLFSAS-GGKISIFSLETFQ-------TLATFANP 362 (608)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~----s-~~~l~s~~-d~~i~vwd~~~~~-------~~~~~~~~ 362 (608)
.-| ...|..+...+.-.....|.++.. . +.+++..+ +|.++--.+.... ....+...
T Consensus 76 ---------~~~-~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~ 145 (307)
T 1zi0_A 76 ---------ATR-GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG 145 (307)
T ss_dssp ---------CCS-SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT
T ss_pred ---------CCC-CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC
Confidence 000 112322211111123344555432 3 55777777 9999988775321 21223333
Q ss_pred CCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEEEE
Q 007306 363 PPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCVWD 432 (608)
Q Consensus 363 ~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 432 (608)
+.+..+....+. .++..+.+|.+..++... |...-.+. ....|.++...+++..+++.+..|.++-.+
T Consensus 146 -d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~ 223 (307)
T 1zi0_A 146 -DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTA 223 (307)
T ss_dssp -CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEEC
T ss_pred -CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEE
Confidence 444444444444 677778888877776532 11111222 234566665555566788889999998887
Q ss_pred CCCCcee----cccceeeeeccCCCCccceEEEEE-cCCCCEEEEEeCCcEEEEECCC
Q 007306 433 AVGWKKL----CSKFLHSFQTGLVPETTIVNHIQF-HPDQIHLLSIHEGQIDVYEAPT 485 (608)
Q Consensus 433 ~~~~~~~----~~~~~~~~~~~~~~~~~~v~~v~~-sp~~~~l~~~~d~~i~iwd~~~ 485 (608)
+..-... .+.....+.... +.+..+.. .++...++.+.+|.+.-+++..
T Consensus 224 ~~e~~~~~Rg~kG~~~~~~~~~~----~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 224 VAEYPTKSRATKGVISIKVTERN----GLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp GGGSCCCCTTSCCEESSCCCTTT----CSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred HHHhccCCCCCCCEEeeEecCCC----CeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 7432111 011111111111 24444333 4444455557777777666643
No 380
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=35.33 E-value=19 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=18.4
Q ss_pred cchhhhhHHHHHHHHHhhhcHH
Q 007306 9 DKDTYTHLITLIMKFLEEENFK 30 (608)
Q Consensus 9 ~~~~~~~ivrli~q~L~~~g~~ 30 (608)
+-++-.|++.||.+.|+.+||+
T Consensus 58 ndeqakelleliarllqklgyk 79 (96)
T 2jvf_A 58 NDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCS
T ss_pred ChHHHHHHHHHHHHHHHHhCCC
Confidence 3456678899999999999995
No 381
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=35.18 E-value=5.3 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=23.8
Q ss_pred hhcCccccHHHHHHHHhcCCHHHHHHHHhhc
Q 007306 38 QESKIFFNVHRFGEIVMNGEWEKAEKYLSAF 68 (608)
Q Consensus 38 ~Es~~~~~~~~~~~~i~~G~w~~~~~~l~~~ 68 (608)
+|||++..+..+.+.| +|+|+++.+.++++
T Consensus 43 ~~sGL~y~~~pmgT~I-EGe~devm~vvk~~ 72 (106)
T 1vk8_A 43 SSWGMKYEVGPSNTTV-EGEFEEIMDRVKEL 72 (106)
T ss_dssp HTTCSCEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 4799988766665555 59999999999876
No 382
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=33.11 E-value=33 Score=39.01 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=33.4
Q ss_pred CCeEEEEEecCCCEEEEEEcCCeEEEEeCCCCceeEEEec
Q 007306 499 LPITYATYSCDGKCIYVSCKSGHVKVFDTSTLELRCQINL 538 (608)
Q Consensus 499 ~~v~~~~~s~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 538 (608)
..+.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 3455566778889999999999999999999998887654
No 383
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.09 E-value=35 Score=22.19 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=16.9
Q ss_pred ceecchhhhhHHHHHHHHHhhhcHHH
Q 007306 6 MCIDKDTYTHLITLIMKFLEEENFKE 31 (608)
Q Consensus 6 ~~~~~~~~~~ivrli~q~L~~~g~~~ 31 (608)
|++..+|. -.-.++-|.|+||..
T Consensus 1 ~~~~~ee~---~a~~L~~L~eMGF~D 23 (54)
T 2cp8_A 1 GSSGSSGQ---TAALMAHLFEMGFCD 23 (54)
T ss_dssp CCCSSCTT---HHHHHHHHHHHTCCC
T ss_pred CCCCHHHh---hHHHHHHHHHcCCCc
Confidence 34566666 477899999999943
No 384
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=28.36 E-value=3.6e+02 Score=24.94 Aligned_cols=201 Identities=12% Similarity=0.052 Sum_probs=108.6
Q ss_pred ecCCCCeEEEeecCCeEEEeeccCCCCCC----ceeeEeecCCCCCCcEEEEEEeeCCCEEEEEeCCCcEEEEecCCCcc
Q 007306 218 SLPDADSAVCAKSLEKSVNLKLQLINEPS----ECRTLLLPDNSFGGRVVRLIYSHSGDFLVALTQTATHKLWKWQSNKQ 293 (608)
Q Consensus 218 ~s~dg~~l~~~~~d~~i~iWd~~~~~~~~----~~~~~~l~~~~h~~~V~~~~fsp~g~~l~s~s~dg~i~iw~~~~~~~ 293 (608)
+-|+..++++.+.+|.|+--......... -.....+. -.+.+..+........++..+..|.+.-.....-..
T Consensus 4 li~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk---e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~ 80 (312)
T 1suu_A 4 LMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN---DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 80 (312)
T ss_dssp ----CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC---TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC
T ss_pred ccCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC---CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCC
Confidence 44677889999999999988765422111 11122222 245666666666677788888888876554321110
Q ss_pred eeeecccceeeEEeeCCCCeeeeccccCCCCCCeEEEE-E---e-CCEEEEEe-CCcEEEEEcCCC-------ceeeEec
Q 007306 294 SLEEENVNMESQLYQPSSKLVMTNDIAADPKDSISCFA-L---R-GSHLFSAS-GGKISIFSLETF-------QTLATFA 360 (608)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~---s-~~~l~s~~-d~~i~vwd~~~~-------~~~~~~~ 360 (608)
.-|. ..|..+...+.-.....|.++. . . +.+++..+ .|.++...+... .....+.
T Consensus 81 -----------~~r~-~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 81 -----------SSRA-SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp -------------------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred -----------CCcc-CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 0000 1111111111001233444442 2 2 45677777 899888877432 2222233
Q ss_pred CCCCCeEEEEEcCCC-eEEEEeCCCcEEEEeCCC---------CceEEEeeCccccEEEEEEeCCCCEEEEEcCCCcEEE
Q 007306 361 NPPPIATYFILLPQD-LFAFGFDDSSILVHCPCT---------KKTKAKLKGHQNRITCLAYSLSLNVLVSSGADAQLCV 430 (608)
Q Consensus 361 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~v 430 (608)
. ...+..+....++ .++..+.+|.+..+.... |...-.+. ....|.++....++..+++.+..|..+.
T Consensus 149 ~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr 226 (312)
T 1suu_A 149 D-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKR 226 (312)
T ss_dssp T-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEE
T ss_pred C-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEE
Confidence 3 4455555554444 788888899888887543 11111222 2345666655556667888899999998
Q ss_pred EECCC
Q 007306 431 WDAVG 435 (608)
Q Consensus 431 wd~~~ 435 (608)
.++..
T Consensus 227 ~~~~e 231 (312)
T 1suu_A 227 LNMSK 231 (312)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 88754
No 385
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=27.02 E-value=60 Score=21.98 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=25.2
Q ss_pred cchhhhhHHHHHHHHHhhhcHHHHHHHHHhhcCc
Q 007306 9 DKDTYTHLITLIMKFLEEENFKESLQALEQESKI 42 (608)
Q Consensus 9 ~~~~~~~ivrli~q~L~~~g~~~s~~~L~~Es~~ 42 (608)
+|+.+ .|||+--|.==||..-|..|-.+-+.
T Consensus 15 ~Re~L---YrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 15 NREIL---YRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHH---HHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHH---HHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 34444 89999999999999999999777664
No 386
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=26.98 E-value=43 Score=31.67 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCH---HHHHHHHhhc
Q 007306 46 VHRFGEIVMNGEW---EKAEKYLSAF 68 (608)
Q Consensus 46 ~~~~~~~i~~G~w---~~~~~~l~~~ 68 (608)
+.+|++.|.+|++ .||-+.++.+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 6788888888888 8888888776
No 387
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=26.91 E-value=33 Score=24.67 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHhhhcHHHHHHHHHhhcCccc
Q 007306 12 TYTHLITLIMKFLEEENFKESLQALEQESKIFF 44 (608)
Q Consensus 12 ~~~~ivrli~q~L~~~g~~~s~~~L~~Es~~~~ 44 (608)
+..++.+-|+++|++.| .|+..|-+|-|++-
T Consensus 14 ~~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk 44 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG--ATAAQLTRQLNMEK 44 (82)
T ss_dssp CSHHHHHHHHHHHSSST--EEHHHHHHHSSSCH
T ss_pred chHHHHHHHHHHHHHcC--CCHHHHHHHHCcCH
Confidence 55566889999999999 89999999999865
No 388
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.69 E-value=45 Score=23.61 Aligned_cols=35 Identities=6% Similarity=0.141 Sum_probs=23.3
Q ss_pred chhhhhHHHHHHHHHhhh-cHHHHHHHHHhhcCccc
Q 007306 10 KDTYTHLITLIMKFLEEE-NFKESLQALEQESKIFF 44 (608)
Q Consensus 10 ~~~~~~ivrli~q~L~~~-g~~~s~~~L~~Es~~~~ 44 (608)
+.-..+|+.+|-++..+. ||.-|..-|.++.|++.
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~ 38 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSI 38 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCH
Confidence 334433444454544444 99999999999999964
No 389
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=24.70 E-value=40 Score=32.00 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=33.2
Q ss_pred CcceecchhhhhHHHHHHHHHhhhcHHHHHHH-----HHhhcCccc
Q 007306 4 SKMCIDKDTYTHLITLIMKFLEEENFKESLQA-----LEQESKIFF 44 (608)
Q Consensus 4 ~~~~~~~~~~~~ivrli~q~L~~~g~~~s~~~-----L~~Es~~~~ 44 (608)
+.+-++..|..+-.+-|++||+..||+..+.+ ++.|||+..
T Consensus 5 ~~~~~~~~~~~~~a~~i~~~l~~~G~s~~~aAgilGN~~~ESg~nP 50 (334)
T 3csq_A 5 SNKYLTMSEMKVNAQYILNYLSSNGWTKQAICGMLGNMQSESTINP 50 (334)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSSCT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCc
Confidence 44567778888888999999999999887655 799999533
No 390
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=23.28 E-value=1.3e+02 Score=17.99 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=22.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCccccccCC
Q 007306 564 NRIALGLTNGRVHVIEPLESEVEWGKLP 591 (608)
Q Consensus 564 ~~las~s~Dg~v~iW~~~~~~~~~~~~~ 591 (608)
.....-..||....++..+++..|..+.
T Consensus 11 ~W~e~~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 11 IWVENKTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp SEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred CCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence 4555557899999999999999998764
No 391
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=23.08 E-value=9.4 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.488 Sum_probs=23.5
Q ss_pred hhcCccccHHHHHHHHhcCCHHHHHHHHhhc
Q 007306 38 QESKIFFNVHRFGEIVMNGEWEKAEKYLSAF 68 (608)
Q Consensus 38 ~Es~~~~~~~~~~~~i~~G~w~~~~~~l~~~ 68 (608)
+|||++..+..+-+.| +|+|+++.+.++++
T Consensus 34 ~~sGl~y~~~pm~T~I-EGe~devm~vv~~~ 63 (104)
T 1lxj_A 34 RESPLKSTLHSAGTTI-EGPWDDVMGLIGEI 63 (104)
T ss_dssp HTSSSEEEEETTEEEE-EEEHHHHHHHHHHH
T ss_pred HHcCCCeEeCCCccEE-EcCHHHHHHHHHHH
Confidence 4789988766665555 59999999999876
No 392
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=22.94 E-value=11 Score=28.85 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=23.5
Q ss_pred hhcCccccHHHHHHHHhcCCHHHHHHHHhhc
Q 007306 38 QESKIFFNVHRFGEIVMNGEWEKAEKYLSAF 68 (608)
Q Consensus 38 ~Es~~~~~~~~~~~~i~~G~w~~~~~~l~~~ 68 (608)
+|||+...+..+-+.| +|+|+++.+.++++
T Consensus 35 ~~sGl~y~~~pmgT~I-EGe~devm~vv~~~ 64 (109)
T 1yqh_A 35 QQSGVRYEVGAMETTL-EGELDVLLDVVKRA 64 (109)
T ss_dssp HHSCSEEEECSSCEEE-EECHHHHHHHHHHH
T ss_pred HHcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 4799988766665555 59999999999875
No 393
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=22.41 E-value=9.4 Score=29.06 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=23.6
Q ss_pred hhcCccccHHHHHHHHhcCCHHHHHHHHhhc
Q 007306 38 QESKIFFNVHRFGEIVMNGEWEKAEKYLSAF 68 (608)
Q Consensus 38 ~Es~~~~~~~~~~~~i~~G~w~~~~~~l~~~ 68 (608)
+|||++..+..+-+.| +|+|+++.+.++++
T Consensus 30 ~~sGl~y~~~pmgT~I-EGe~devm~vv~~~ 59 (104)
T 2ibo_A 30 QTQEVTMVVTPFETVL-EGEFDELMRILKEA 59 (104)
T ss_dssp HHSSSEEEECSSCEEE-EEEHHHHHHHHHHH
T ss_pred HHcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 4799988766665555 49999999999876
No 394
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.89 E-value=1.2e+02 Score=21.17 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=26.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCccccccCCCCC
Q 007306 563 PNRIALGLTNGRVHVIEPLESEVEWGKLPFTD 594 (608)
Q Consensus 563 ~~~las~s~Dg~v~iW~~~~~~~~~~~~~~~~ 594 (608)
..+...-+.||.++.|+..+.+..|..+..-.
T Consensus 20 t~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk 51 (73)
T 2dk7_A 20 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDLI 51 (73)
T ss_dssp SSCEEEEESSSCEEEEETTTTEECSSCCTTTT
T ss_pred CCcEEEECCCCCEEEecCcccceeccCChHhc
Confidence 45666677899999999999999998876543
No 395
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.18 E-value=5e+02 Score=24.11 Aligned_cols=186 Identities=11% Similarity=0.065 Sum_probs=96.3
Q ss_pred EEEEEe-CCcEEEEEcCCCc----eeeEecCCCCCeEEEEEcCCC-eEEEEeCCCcEEEEe---CCC------CceEEE-
Q 007306 336 HLFSAS-GGKISIFSLETFQ----TLATFANPPPIATYFILLPQD-LFAFGFDDSSILVHC---PCT------KKTKAK- 399 (608)
Q Consensus 336 ~l~s~~-d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~vwd---~~~------~~~~~~- 399 (608)
.+++.+ +|.|+--.+...+ ....++.. ..+..+...... .++..+..|.++-+. +.. |.++..
T Consensus 7 ~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~ 85 (323)
T 1wp5_A 7 VIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANI 85 (323)
T ss_dssp EEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGT
T ss_pred EEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhc
Confidence 456666 7877766543211 11122222 233333333333 666667777655544 322 222111
Q ss_pred --eeCccccEEEEEEeCC---CCEEEEEcCCCcEEEEECCCCceec-cccee--eeeccCCCCccceEEEEEcC-CCCEE
Q 007306 400 --LKGHQNRITCLAYSLS---LNVLVSSGADAQLCVWDAVGWKKLC-SKFLH--SFQTGLVPETTIVNHIQFHP-DQIHL 470 (608)
Q Consensus 400 --~~~~~~~v~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~-~~~~~--~~~~~~~~~~~~v~~v~~sp-~~~~l 470 (608)
+. ....|.++..-++ +.+++.++.+|.++...+....... ...+. .+..+ +.+..+.... +...+
T Consensus 86 i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 86 IPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDGMNELF 159 (323)
T ss_dssp SCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECSCSEEE
T ss_pred cCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCCCCEEE
Confidence 11 2334665543332 5678899999999998875422111 11111 12222 2444544443 44444
Q ss_pred EEEeCCcEEEEECCCCc-------eeeeecCCCCCCCeEEEEEecCCC-EEEEEEcCCeEEEEeCCC
Q 007306 471 LSIHEGQIDVYEAPTLN-------HTSQLVPDKMDLPITYATYSCDGK-CIYVSCKSGHVKVFDTST 529 (608)
Q Consensus 471 ~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~iwd~~~ 529 (608)
+.+.+|.+..++...-. -++-+... ....|.++..-+++. .|++.+..|..+..++..
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 45788888888764211 12222221 245677775544455 788888899888777654
No 396
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=20.80 E-value=13 Score=28.06 Aligned_cols=31 Identities=6% Similarity=0.262 Sum_probs=24.0
Q ss_pred HhhcCccccHHHHHHHHhcC-CHHHHHHHHhhc
Q 007306 37 EQESKIFFNVHRFGEIVMNG-EWEKAEKYLSAF 68 (608)
Q Consensus 37 ~~Es~~~~~~~~~~~~i~~G-~w~~~~~~l~~~ 68 (608)
-+|||++..+..+-+.| +| +|+++.+.+++.
T Consensus 29 i~~sgl~y~~~pm~T~i-EG~e~devm~vv~~~ 60 (99)
T 1lxn_A 29 LKKLNVRYEISGMGTLL-EAEDLDELMEAVKAA 60 (99)
T ss_dssp HTTSSCEEEEETTEEEE-EESSHHHHHHHHHHH
T ss_pred HHHcCCCeEeCCCeeEE-ECCCHHHHHHHHHHH
Confidence 34799988766665555 59 999999999876
No 397
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=20.68 E-value=11 Score=28.55 Aligned_cols=30 Identities=10% Similarity=0.290 Sum_probs=23.6
Q ss_pred hhcCccccHHHHHHHHhcCCHHHHHHHHhhc
Q 007306 38 QESKIFFNVHRFGEIVMNGEWEKAEKYLSAF 68 (608)
Q Consensus 38 ~Es~~~~~~~~~~~~i~~G~w~~~~~~l~~~ 68 (608)
+|||++..+..+-+.| +|+|+++.+.++++
T Consensus 34 ~~sGl~y~~~pm~T~I-EGe~devm~vv~~~ 63 (100)
T 2epi_A 34 KKYDLKVETNAMGTVL-EGDLDEILKAFKEA 63 (100)
T ss_dssp TTSSCEEEEETTEEEE-EEEHHHHHHHHHHH
T ss_pred HHcCCCeEecCCccEE-EcCHHHHHHHHHHH
Confidence 4799988766665555 49999999999876
Done!