BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007307
         (608 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
           (Glcalpha1- 3glc)
 pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
           (Glcalpha1-4glc)
          Length = 190

 Score = 40.4 bits (93), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 264 LYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDI 322
           LYQT   +  +  Y++ +  + +Y++   FAE+     ++ Q+VFD+ VN   V + +DI
Sbjct: 60  LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEV--YFAQSQQKVFDVRVNGHTVVKDLDI 117

Query: 323 FNSVGSFAAY 332
           F+ VG   A+
Sbjct: 118 FDRVGHSTAH 127


>pdb|2JWP|A Chain A, Malectin
          Length = 174

 Score = 40.0 bits (92), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 264 LYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDI 322
           LYQT   +  +  Y++ +  + +Y++   FAE+     ++ Q+VFD+ VN   V + +DI
Sbjct: 56  LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEV--YFAQSQQKVFDVRVNGHTVVKDLDI 113

Query: 323 FNSVGSFAAY 332
           F+ VG   A+
Sbjct: 114 FDRVGHSTAH 123


>pdb|3OQC|A Chain A, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
 pdb|3OQC|B Chain B, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
          Length = 481

 Score = 35.0 bits (79), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%)

Query: 57  YTSGATSIVSEPLHFRFPHEKTLRYFPPSSG---------KKNCYIIPNLPPGRYYIRTF 107
           Y  G + +V EPLHF+ P +K L      SG         +K  + + NLP  R Y +  
Sbjct: 199 YMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQAYRKELHDLFNLPHDRPYFKRI 258

Query: 108 TVY--------DNYDGKSHSPSFDVSVEGTLV 131
             Y        D Y    H+     ++EG+++
Sbjct: 259 NAYHFPDELYKDGYIRNPHTYLSPPNIEGSMI 290


>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
 pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
          Length = 800

 Score = 29.6 bits (65), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 337 VAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVP---- 392
           +A  LS   +++  V     +LISG+    +VPND+      V    A+  ++  P    
Sbjct: 303 IAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIVNTIIYPAFGM 362

Query: 393 DRMGW-NGDPCAP 404
            RM + NGDP  P
Sbjct: 363 QRMHYRNGDPQTP 375


>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
 pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
 pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
           Rotavirus Particles
 pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
           Rotavirus Particles
          Length = 880

 Score = 29.3 bits (64), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 337 VAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVP---- 392
           +A  LS   +++  V     +LISG+    +VPND+      V    A+  ++  P    
Sbjct: 383 IAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIVNTIIYPAFGM 442

Query: 393 DRMGW-NGDPCAP 404
            RM + NGDP  P
Sbjct: 443 QRMHYRNGDPQTP 455


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,650,666
Number of Sequences: 62578
Number of extensions: 737215
Number of successful extensions: 1475
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1474
Number of HSP's gapped (non-prelim): 6
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)