Query 007307
Match_columns 608
No_of_seqs 491 out of 3613
Neff 8.2
Searched_HMMs 46136
Date Thu Mar 28 21:47:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 1.2E-87 2.6E-92 755.2 51.8 551 24-596 18-602 (623)
2 PF12819 Malectin_like: Carboh 100.0 3.1E-59 6.8E-64 489.2 30.7 319 34-367 1-347 (347)
3 PLN03150 hypothetical protein; 99.9 1.8E-20 4E-25 211.5 21.7 318 32-489 194-532 (623)
4 PF11721 Malectin: Di-glucose 99.7 1.8E-16 3.9E-21 150.1 7.8 141 31-177 2-174 (174)
5 PF11721 Malectin: Di-glucose 99.5 2.9E-15 6.4E-20 141.8 4.7 143 201-351 2-151 (174)
6 PLN00113 leucine-rich repeat r 99.3 1.3E-11 2.7E-16 148.1 10.0 65 426-490 525-589 (968)
7 PLN00113 leucine-rich repeat r 99.2 1.4E-11 3.1E-16 147.6 10.1 126 375-513 27-156 (968)
8 PF12819 Malectin_like: Carboh 98.9 4.4E-09 9.6E-14 110.7 11.2 151 31-182 180-347 (347)
9 KOG0472 Leucine-rich repeat pr 98.5 8.4E-09 1.8E-13 105.4 -2.5 159 336-520 70-228 (565)
10 KOG0617 Ras suppressor protein 98.5 1.5E-08 3.3E-13 92.5 -1.1 153 337-514 36-190 (264)
11 KOG0617 Ras suppressor protein 98.5 1.8E-08 3.9E-13 91.9 -1.6 85 423-511 32-116 (264)
12 KOG0444 Cytoskeletal regulator 98.4 1.1E-07 2.3E-12 102.1 1.2 85 423-511 102-187 (1255)
13 KOG0472 Leucine-rich repeat pr 98.4 2.1E-07 4.6E-12 95.3 3.3 126 364-510 392-541 (565)
14 PF13855 LRR_8: Leucine rich r 98.3 1.5E-07 3.3E-12 72.8 1.2 59 426-484 3-61 (61)
15 KOG0444 Cytoskeletal regulator 98.2 3.9E-07 8.4E-12 97.8 0.8 154 338-513 11-166 (1255)
16 PF13855 LRR_8: Leucine rich r 98.1 1.6E-06 3.6E-11 66.9 2.2 61 448-509 1-61 (61)
17 KOG4194 Membrane glycoprotein 98.1 1.3E-06 2.7E-11 93.6 1.9 86 424-510 269-354 (873)
18 KOG0618 Serine/threonine phosp 97.9 2.6E-06 5.6E-11 95.8 0.9 153 334-509 310-488 (1081)
19 KOG0618 Serine/threonine phosp 97.9 1.1E-05 2.3E-10 91.0 4.4 154 334-510 241-420 (1081)
20 KOG4237 Extracellular matrix p 97.9 4.7E-06 1E-10 85.6 1.2 98 413-511 51-154 (498)
21 KOG4194 Membrane glycoprotein 97.8 2E-05 4.2E-10 84.7 4.7 85 424-510 78-162 (873)
22 KOG0532 Leucine-rich repeat (L 97.8 5.8E-06 1.3E-10 88.5 0.2 167 337-511 78-248 (722)
23 PF14580 LRR_9: Leucine-rich r 97.7 2.9E-05 6.4E-10 73.3 3.5 81 425-509 43-125 (175)
24 KOG4237 Extracellular matrix p 97.7 1.4E-05 2.9E-10 82.3 1.2 89 422-511 272-360 (498)
25 PF14580 LRR_9: Leucine-rich r 97.6 5E-05 1.1E-09 71.7 4.0 83 424-511 19-102 (175)
26 PF12799 LRR_4: Leucine Rich r 97.6 4.7E-05 1E-09 54.5 2.6 37 448-485 1-37 (44)
27 PRK15387 E3 ubiquitin-protein 97.5 0.00031 6.6E-09 80.9 9.4 72 425-509 223-294 (788)
28 KOG0532 Leucine-rich repeat (L 97.5 1.4E-05 3E-10 85.7 -2.2 133 336-494 123-255 (722)
29 PRK15370 E3 ubiquitin-protein 97.4 0.00054 1.2E-08 79.1 10.0 76 425-510 200-275 (754)
30 PRK15370 E3 ubiquitin-protein 97.3 0.00041 8.9E-09 80.0 6.4 79 425-510 347-428 (754)
31 KOG4579 Leucine-rich repeat (L 97.1 0.00012 2.5E-09 65.2 0.2 80 424-507 53-133 (177)
32 PRK15387 E3 ubiquitin-protein 97.1 0.00049 1.1E-08 79.2 5.0 77 425-511 383-459 (788)
33 PF12799 LRR_4: Leucine Rich r 97.1 0.00027 5.9E-09 50.6 1.6 36 425-461 2-37 (44)
34 KOG1259 Nischarin, modulator o 97.1 0.00018 3.8E-09 71.7 0.8 82 423-510 306-387 (490)
35 KOG1259 Nischarin, modulator o 96.9 0.00028 6E-09 70.4 0.7 80 426-510 286-365 (490)
36 KOG1859 Leucine-rich repeat pr 96.8 8.5E-05 1.8E-09 81.8 -4.0 84 424-511 187-293 (1096)
37 COG4886 Leucine-rich repeat (L 96.8 0.00099 2.1E-08 71.7 3.7 80 425-508 141-220 (394)
38 cd00116 LRR_RI Leucine-rich re 96.7 0.00077 1.7E-08 69.9 1.8 85 425-510 109-206 (319)
39 PLN03210 Resistant to P. syrin 96.6 0.0031 6.6E-08 77.2 7.1 81 426-509 636-716 (1153)
40 PLN03210 Resistant to P. syrin 96.5 0.0036 7.7E-08 76.7 6.2 83 425-510 612-694 (1153)
41 cd00116 LRR_RI Leucine-rich re 96.4 0.0012 2.6E-08 68.5 1.3 85 425-509 138-233 (319)
42 KOG4579 Leucine-rich repeat (L 96.4 0.00064 1.4E-08 60.5 -0.8 82 426-511 29-114 (177)
43 COG4886 Leucine-rich repeat (L 96.2 0.0034 7.4E-08 67.5 3.4 83 425-511 117-200 (394)
44 PF08263 LRRNT_2: Leucine rich 96.2 0.0073 1.6E-07 42.9 3.9 35 376-416 2-43 (43)
45 KOG4658 Apoptotic ATPase [Sign 95.8 0.0062 1.3E-07 71.6 3.6 78 425-504 572-649 (889)
46 PF00560 LRR_1: Leucine Rich R 95.0 0.007 1.5E-07 36.3 0.0 19 450-469 2-20 (22)
47 KOG4658 Apoptotic ATPase [Sign 94.8 0.015 3.3E-07 68.4 2.5 86 425-513 546-634 (889)
48 KOG3593 Predicted receptor-lik 94.7 0.038 8.1E-07 54.8 4.5 66 261-328 107-174 (355)
49 KOG1859 Leucine-rich repeat pr 93.7 0.0077 1.7E-07 66.9 -2.9 61 426-490 166-226 (1096)
50 PF00560 LRR_1: Leucine Rich R 93.3 0.032 7E-07 33.4 0.5 20 473-493 1-20 (22)
51 KOG0531 Protein phosphatase 1, 93.1 0.044 9.5E-07 59.5 1.7 80 424-509 95-174 (414)
52 KOG2739 Leucine-rich acidic nu 92.0 0.077 1.7E-06 52.5 1.6 77 426-506 45-125 (260)
53 KOG1644 U2-associated snRNP A' 91.6 0.19 4E-06 48.1 3.6 81 425-509 43-125 (233)
54 KOG2982 Uncharacterized conser 91.0 0.059 1.3E-06 54.2 -0.3 75 408-485 84-159 (418)
55 KOG3207 Beta-tubulin folding c 90.6 0.05 1.1E-06 57.4 -1.3 60 425-485 247-314 (505)
56 KOG0531 Protein phosphatase 1, 89.2 0.12 2.6E-06 56.1 0.2 80 426-510 74-153 (414)
57 KOG3593 Predicted receptor-lik 89.0 0.26 5.7E-06 49.0 2.3 139 20-165 50-197 (355)
58 KOG1644 U2-associated snRNP A' 89.0 0.55 1.2E-05 45.0 4.3 60 447-509 41-100 (233)
59 KOG0473 Leucine-rich repeat pr 88.9 0.019 4.1E-07 55.7 -5.4 55 428-484 69-123 (326)
60 PF04478 Mid2: Mid2 like cell 87.8 0.37 7.9E-06 43.7 2.3 31 531-561 49-80 (154)
61 PF13504 LRR_7: Leucine rich r 87.2 0.35 7.6E-06 26.9 1.2 13 473-485 2-14 (17)
62 COG5238 RNA1 Ran GTPase-activa 86.6 1.7 3.7E-05 43.5 6.4 42 444-485 88-133 (388)
63 KOG3207 Beta-tubulin folding c 85.4 0.28 6E-06 52.0 0.2 87 422-508 144-233 (505)
64 KOG2739 Leucine-rich acidic nu 85.1 0.43 9.3E-06 47.4 1.4 61 424-486 65-130 (260)
65 smart00370 LRR Leucine-rich re 83.5 0.97 2.1E-05 27.9 2.1 19 472-491 2-20 (26)
66 smart00369 LRR_TYP Leucine-ric 83.5 0.97 2.1E-05 27.9 2.1 19 472-491 2-20 (26)
67 smart00370 LRR Leucine-rich re 81.9 0.95 2.1E-05 28.0 1.6 20 447-467 1-20 (26)
68 smart00369 LRR_TYP Leucine-ric 81.9 0.95 2.1E-05 28.0 1.6 20 447-467 1-20 (26)
69 PRK15386 type III secretion pr 78.8 3.9 8.3E-05 44.0 5.8 72 425-507 95-187 (426)
70 KOG2982 Uncharacterized conser 77.8 0.65 1.4E-05 47.0 -0.3 61 426-486 73-135 (418)
71 PF13516 LRR_6: Leucine Rich r 77.5 0.89 1.9E-05 27.5 0.4 20 471-490 1-20 (24)
72 KOG1909 Ran GTPase-activating 72.3 5.8 0.00013 41.2 4.8 39 335-373 93-133 (382)
73 smart00364 LRR_BAC Leucine-ric 69.8 2.7 5.8E-05 26.3 1.1 21 585-605 2-22 (26)
74 PTZ00382 Variant-specific surf 69.3 3.9 8.4E-05 34.6 2.4 20 528-547 63-82 (96)
75 KOG0473 Leucine-rich repeat pr 69.2 0.35 7.7E-06 47.2 -4.3 82 424-509 42-123 (326)
76 PRK15386 type III secretion pr 67.5 7.5 0.00016 41.8 4.7 60 424-493 72-135 (426)
77 KOG3665 ZYG-1-like serine/thre 63.3 3.7 8.1E-05 47.5 1.6 83 424-508 173-261 (699)
78 PF15102 TMEM154: TMEM154 prot 62.9 6.3 0.00014 35.7 2.6 7 533-539 58-64 (146)
79 PF02439 Adeno_E3_CR2: Adenovi 57.3 7.9 0.00017 26.5 1.7 11 550-560 24-34 (38)
80 KOG2123 Uncharacterized conser 54.6 2.2 4.7E-05 43.0 -1.9 66 423-491 40-107 (388)
81 COG5238 RNA1 Ran GTPase-activa 52.7 15 0.00033 37.0 3.6 62 424-485 92-170 (388)
82 KOG3665 ZYG-1-like serine/thre 51.2 8.2 0.00018 44.7 1.7 82 424-508 148-231 (699)
83 PF01299 Lamp: Lysosome-associ 51.2 9.8 0.00021 39.4 2.2 42 499-550 248-289 (306)
84 smart00365 LRR_SD22 Leucine-ri 50.9 10 0.00023 23.7 1.4 14 448-461 2-15 (26)
85 KOG1909 Ran GTPase-activating 46.6 11 0.00024 39.2 1.6 61 425-485 93-170 (382)
86 smart00368 LRR_RI Leucine rich 45.3 14 0.00031 23.2 1.5 14 472-485 2-15 (28)
87 PF15050 SCIMP: SCIMP protein 44.4 9.4 0.0002 33.0 0.6 17 544-560 20-36 (133)
88 KOG2120 SCF ubiquitin ligase, 44.2 2.6 5.6E-05 42.9 -3.2 60 449-509 186-246 (419)
89 PF05454 DAG1: Dystroglycan (D 43.6 7.7 0.00017 39.6 0.0 16 548-563 162-177 (290)
90 KOG2123 Uncharacterized conser 43.6 2 4.2E-05 43.3 -4.1 77 426-508 21-99 (388)
91 PF12273 RCR: Chitin synthesis 42.8 24 0.00051 31.5 3.0 23 538-560 7-29 (130)
92 PF08374 Protocadherin: Protoc 41.0 21 0.00046 34.5 2.5 11 534-544 41-51 (221)
93 PF14575 EphA2_TM: Ephrin type 39.6 12 0.00026 30.0 0.6 10 551-560 19-28 (75)
94 TIGR01478 STEVOR variant surfa 38.1 22 0.00048 35.8 2.2 16 546-561 273-288 (295)
95 PF05393 Hum_adeno_E3A: Human 35.7 49 0.0011 27.1 3.4 13 549-561 49-61 (94)
96 TIGR00864 PCC polycystin catio 35.5 27 0.00058 46.0 2.8 33 454-486 1-33 (2740)
97 PTZ00370 STEVOR; Provisional 34.1 26 0.00055 35.5 1.9 15 547-561 270-284 (296)
98 PF06365 CD34_antigen: CD34/Po 33.5 65 0.0014 31.1 4.5 15 532-546 101-115 (202)
99 KOG3763 mRNA export factor TAP 30.3 25 0.00054 38.9 1.2 61 424-487 218-285 (585)
100 PF03302 VSP: Giardia variant- 28.5 49 0.0011 35.6 3.1 30 526-555 362-392 (397)
101 PF13306 LRR_5: Leucine rich r 28.1 85 0.0018 27.0 4.2 54 426-481 14-67 (129)
102 PRK06764 hypothetical protein; 27.6 53 0.0011 26.7 2.3 19 89-107 73-91 (105)
103 PF14610 DUF4448: Protein of u 26.9 45 0.00098 31.8 2.3 22 533-554 159-180 (189)
104 KOG2120 SCF ubiquitin ligase, 26.2 6.5 0.00014 40.1 -3.7 57 425-481 186-243 (419)
105 PF05568 ASFV_J13L: African sw 26.0 35 0.00075 30.7 1.1 11 544-554 42-52 (189)
106 PF12191 stn_TNFRSF12A: Tumour 24.9 46 0.00099 29.3 1.7 9 554-562 100-108 (129)
107 PF11770 GAPT: GRB2-binding ad 24.1 36 0.00078 30.9 0.9 42 535-576 11-52 (158)
108 PF07204 Orthoreo_P10: Orthore 23.7 46 0.001 27.7 1.4 18 543-560 52-69 (98)
109 PHA03265 envelope glycoprotein 23.5 41 0.0009 34.9 1.3 11 32-42 23-33 (402)
110 PF11857 DUF3377: Domain of un 22.7 1E+02 0.0022 24.6 3.0 28 532-559 30-57 (74)
111 PF14299 PP2: Phloem protein 2 21.0 4.9E+02 0.011 23.8 7.9 99 75-181 38-153 (154)
112 KOG2230 Predicted beta-mannosi 20.4 1.3E+03 0.028 26.2 14.2 117 245-366 33-159 (867)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-87 Score=755.23 Aligned_cols=551 Identities=34% Similarity=0.602 Sum_probs=404.8
Q ss_pred ccCCCCccEEEccCCCCCC-cCCCCceEeeCCCCeecCCcccccCCCCCCCCCCceeeecCCCCCCCccEEeecCCCcee
Q 007307 24 SSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRY 102 (608)
Q Consensus 24 ~~~~~~~~~~IdCG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~y~t~R~f~~~~~~~~cY~~~~~~~~~y 102 (608)
++.|.+++|+||||+++++ +|.+||+|++|..+ .+|.....+.+ ....++|+|+|+||.++|+++||+||+.++|+|
T Consensus 18 ~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~-~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~y 95 (623)
T PLN03150 18 LASPEPFTMRISCGARVNVRTAPTNTLWYKDFAY-TGGIPANATRP-SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHY 95 (623)
T ss_pred cccCCCccEEEeCCCCCCcccCCCCCEEcCCccc-ccCccccccCc-ccccchhhccccCCcccccccceEeeecCCCcE
Confidence 3344567899999999877 67899999997544 43433333233 234578999999997678999999999899999
Q ss_pred EEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEeeCCeEEEEEeecCCCCceeeeeeeEec
Q 007307 103 YIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQI 182 (608)
Q Consensus 103 liRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~l~v~f~~~~~~~pfIs~iEl~~l 182 (608)
+||+||+|||||+.++.|.|||++|++.|......+.. ....++||++++++++.++|||+|++.++||||+||||||
T Consensus 96 lVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~l 173 (623)
T PLN03150 96 SVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQV 173 (623)
T ss_pred EEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEEc
Confidence 99999999999998788999999999776553322222 2456899999999999999999999999999999999999
Q ss_pred CCCCCcccC-cCccceEEEeeeeccCCCCCCCCCcCCCCCC--CCCcCCCCCCCCCCCCCCceeeeccceeeCCCCCCCC
Q 007307 183 DPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNY 259 (608)
Q Consensus 183 ~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~--dR~W~~d~~~~~~~~~~~~~~i~t~~~i~~~~~~~~~ 259 (608)
|+++|.... .+.+.+|+++||+||||....+.++|++|++ ||+|.+|++|... .+..+++...|++++..|+.
T Consensus 174 ~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~st~~~I~~~~~~~~~ 249 (623)
T PLN03150 174 DDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAISTENVIKKASNAPNF 249 (623)
T ss_pred CcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----cccccccccccccccCCCcc
Confidence 999996432 2346679999999999876555578899999 9999999887732 34566777778766566778
Q ss_pred ChHHHHHHHHccC---CceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCe-eeceeeeecccCC-ccceee
Q 007307 260 YPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGS-FAAYSW 334 (608)
Q Consensus 260 ~P~~V~~Ta~~~~---~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di~~~~g~-~~~~~~ 334 (608)
+|+.||||||++. .+++|.|+++++.+|+|||||||++......++|+|+|++||+ .+.++|+....|+ ..++++
T Consensus 250 ~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~ 329 (623)
T PLN03150 250 YPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVL 329 (623)
T ss_pred ChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEE
Confidence 9999999999984 4799999999999999999999997644456799999999998 5677888776655 456666
Q ss_pred eeeEeecCCceEEEEecccchh-hHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCcce
Q 007307 335 HYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (608)
Q Consensus 335 ~~~~~~l~~n~L~~~l~~~~~~-piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~gv 413 (608)
++.+. ..++.|+++|.+..++ |+|||+|||++.+.+..+.+.|+.+|+++|..+..+...+|+++||.|.. +.|.|+
T Consensus 330 ~~~v~-~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~-~~w~Gv 407 (623)
T PLN03150 330 NKTVA-VSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWSGA 407 (623)
T ss_pred EeEEe-ecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcc-cccccc
Confidence 65544 3457899999998776 99999999999998888999999999999998876654589999998775 689999
Q ss_pred eecCCCCC------------------------ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCcccc
Q 007307 414 TCHPNKDE------------------------TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLT 469 (608)
Q Consensus 414 ~c~~~~~~------------------------~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~ 469 (608)
.|...... ...+|+.|+|++|+|+|.+|..++.|++|+.|+|++|+|+|.+|+.++
T Consensus 408 ~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 408 DCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred eeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 99632211 112455666666666666666666666677777777777777777777
Q ss_pred CCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCCCCCCCCCCCCccCCCCcccCceEEehhhHHHHHHHHHH
Q 007307 470 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLL 549 (608)
Q Consensus 470 ~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~~p~~~~C~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 549 (608)
+|++|+.|+|++|+|+|.+|..+......+..+++.+|+.+|+.|....|.. +.....+++++++++++++++++
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~-----~~~~~~~i~~~~~~~~~~l~~~~ 562 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP-----HLSVGAKIGIAFGVSVAFLFLVI 562 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc-----cCCCceEEEEEhHHHHHHHHHHH
Confidence 7777777777777777777766655433455677788888888776667752 11223344555444433333333
Q ss_pred HHHHhhhhcCCCCCCCCCcchhhhhhhhcchhhcccceEEEeccccc
Q 007307 550 VVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQH 596 (608)
Q Consensus 550 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 596 (608)
++++++++|++..+. ..+.+.+.++++.++.+..|++..+
T Consensus 563 ~~~~~~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (623)
T PLN03150 563 CAMCWWKRRQNILRA-------QRIAAREAPYAKARTHFSRDVQMTR 602 (623)
T ss_pred HHhhheeehhhhcch-------hhhhcccCcchhcccceeeeccchh
Confidence 333333333222111 0112223445555666666666544
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=3.1e-59 Score=489.24 Aligned_cols=319 Identities=27% Similarity=0.472 Sum_probs=246.7
Q ss_pred EccCCCCCC---cC-CCCceEeeCCCCeecCCcccccCC----CCCCCCCCceeeecCCCCCCCccEEeecC--CCceeE
Q 007307 34 IDCGSATST---TD-PFNTTWQADDRYYTSGATSIVSEP----LHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY 103 (608)
Q Consensus 34 IdCG~~~~~---~d-~~~~~w~~Dd~~~~~g~~~~~~~~----~~~~~~~y~t~R~f~~~~~~~~cY~~~~~--~~~~yl 103 (608)
||||++.+. +| .+||+|++|++|+.+|.+..++.. .....++|+|+|+||. |.|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~--g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPE--GSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCC--CCccEEEeeccCCCCceEE
Confidence 799998764 44 579999999999998887766321 1234689999999994 67899999997 456999
Q ss_pred EEEEeecCCCCCCC-----CCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEee-CCeEEEEEeecCCCC-ceeee
Q 007307 104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS 176 (608)
Q Consensus 104 iRl~F~y~nyd~~~-----~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~-~~~l~v~f~~~~~~~-pfIs~ 176 (608)
|||||+|||||+++ +.+.|||++|++.|...... .....+++||+++.+. ++.|+|||+|++.|. |||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~---~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLS---NSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEec---CCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence 99999999999863 25779999999986543221 1113568999888887 799999999999786 99999
Q ss_pred eeeEecCCCCCcccCcCccceEEEeeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeeeccceee-CCCC
Q 007307 177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ 255 (608)
Q Consensus 177 iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~i~t~~~i~-~~~~ 255 (608)
|||||||+++|+......+.+|++++|+|||+... .+||++|++||+|.++.. ...+..+++..+++ ....
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~--~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~ 227 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSS--FIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN 227 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCccc--ccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence 99999999999643335578899999999997631 278899999999996521 23567777766676 3344
Q ss_pred CCCCChHHHHHHHHcc---C--CceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCeeeceeeeec-ccCC-
Q 007307 256 PPNYYPMKLYQTAIVS---S--GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN-SVGS- 328 (608)
Q Consensus 256 ~~~~~P~~V~~Ta~~~---~--~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~~l~~~di~~-~~g~- 328 (608)
.++.||..||+||+++ + .+++|.+ ++++..|+||||||||+......++|+|+|+|||+.... ++.. ..+.
T Consensus 228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~ 305 (347)
T PF12819_consen 228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD 305 (347)
T ss_pred ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence 5677999999999999 2 3688888 889999999999999998654556899999999995443 4433 2222
Q ss_pred ccceeeeeeEeecCCceEEEEecccchh---hHhhhhhcccc
Q 007307 329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL 367 (608)
Q Consensus 329 ~~~~~~~~~~~~l~~n~L~~~l~~~~~~---piLnalEi~~~ 367 (608)
..+++.++.+....++.++++|.++..+ |+|||+|||++
T Consensus 306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 3444555555544456889999998775 99999999975
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.86 E-value=1.8e-20 Score=211.46 Aligned_cols=318 Identities=16% Similarity=0.215 Sum_probs=192.7
Q ss_pred EEEccCCCCCC--cCC------CCceEeeCCCCeecCC-----ccccc----CCCCCCCCCCceeeecCCCCCCCccEEe
Q 007307 32 YRIDCGSATST--TDP------FNTTWQADDRYYTSGA-----TSIVS----EPLHFRFPHEKTLRYFPPSSGKKNCYII 94 (608)
Q Consensus 32 ~~IdCG~~~~~--~d~------~~~~w~~Dd~~~~~g~-----~~~~~----~~~~~~~~~y~t~R~f~~~~~~~~cY~~ 94 (608)
+|||||+.... .|. -.|.|.+|+.|..... ...+. .+...|..+|+|+|.+... ....+|+|
T Consensus 194 ~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~~ 272 (623)
T PLN03150 194 KRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYTM 272 (623)
T ss_pred EEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEEe
Confidence 69999986432 222 2699999877653211 11111 1222356689999998642 23469999
Q ss_pred ecCCCceeEEEEEeecCCC-CCCCCCCcEEEEECCEEEEecCCCCCcc-cCCCceEEEEEEEeeCCeEEEEEeecCCCCc
Q 007307 95 PNLPPGRYYIRTFTVYDNY-DGKSHSPSFDVSVEGTLVFSWRSPWPEG-LARDGAYSDLFAFVKDGELDLCFYSFATDPP 172 (608)
Q Consensus 95 ~~~~~~~yliRl~F~y~ny-d~~~~~~~Fdv~~~~~~~l~~~~~~~~~-~~~~~~~~e~~~~~~~~~l~v~f~~~~~~~p 172 (608)
++.+++.|+||+||..-.. ......++|||++||..+++.+|+.... ....++++++.+.+.++.+.|+|+|.....|
T Consensus 273 ~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~p 352 (623)
T PLN03150 273 DVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHA 352 (623)
T ss_pred ecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCcc
Confidence 9988899999999964322 1222468999999999999988874332 2345788999887777889999999876679
Q ss_pred eeeeeeeEecCCCCCcccCcCccceEEEeeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeeeccceeeC
Q 007307 173 VIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITN 252 (608)
Q Consensus 173 fIs~iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~i~t~~~i~~ 252 (608)
+||||||+.+...-.... .....+|..+. -..+ +...--|..|..
T Consensus 353 ilNaiEI~~~~~~~~~t~-~~~~~aL~~~k-~~~~------------~~~~~~W~g~~C--------------------- 397 (623)
T PLN03150 353 IINAIEVFEIITAESKTL-LEEVSALQTLK-SSLG------------LPLRFGWNGDPC--------------------- 397 (623)
T ss_pred eeeeeeeeeccccccccC-chHHHHHHHHH-HhcC------------CcccCCCCCCCC---------------------
Confidence 999999998775211100 00011121111 0001 000002432210
Q ss_pred CCCCCCCChHHHHHHHHccCCceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCeeeceeeeecccCCccce
Q 007307 253 TNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAY 332 (608)
Q Consensus 253 ~~~~~~~~P~~V~~Ta~~~~~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~~l~~~di~~~~g~~~~~ 332 (608)
.| .. ..|. + | -|..... .+.
T Consensus 398 ---~p----~~-----------~~w~-----G----v---~C~~~~~---~~~--------------------------- 417 (623)
T PLN03150 398 ---VP----QQ-----------HPWS-----G----A---DCQFDST---KGK--------------------------- 417 (623)
T ss_pred ---CC----cc-----------cccc-----c----c---eeeccCC---CCc---------------------------
Confidence 00 00 0000 0 0 0100000 000
Q ss_pred eeeeeEeecCCceEEEEecccchhhHhhhhhcccccCCC-CCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCc
Q 007307 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (608)
Q Consensus 333 ~~~~~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~-~~~~~~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~ 411 (608)
..+..++++++.|.+.+|+.... +..++.+.+..+. .+.+|.++.
T Consensus 418 -~~v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~l~g~iP~~~~------------------------------- 463 (623)
T PLN03150 418 -WFIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNSIRGNIPPSLG------------------------------- 463 (623)
T ss_pred -eEEEEEECCCCCccccCCHHHhC--CCCCCEEECCCCcccCcCChHHh-------------------------------
Confidence 01123345666777777665443 4445555554433 122222110
Q ss_pred ceeecCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCC-CCCcEEEcccccccccCc
Q 007307 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSS-SKLQLVLLNNNLLEGRVP 489 (608)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l-~~L~~L~Ls~N~l~G~iP 489 (608)
.+.+|+.|+|++|+|+|.+|..+++|++|+.|+|++|+|+|.+|..++.+ .++..+++.+|.....+|
T Consensus 464 ----------~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 464 ----------SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ----------CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 11347889999999999999999999999999999999999999998764 567889999997654444
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.65 E-value=1.8e-16 Score=150.09 Aligned_cols=141 Identities=28% Similarity=0.400 Sum_probs=89.7
Q ss_pred cEEEccCCCCCCcCCCCceEeeCCCCeecCCcc------------cccC--CCCCCCCCCceeeecCCCCCCCccEEeec
Q 007307 31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IVSE--PLHFRFPHEKTLRYFPPSSGKKNCYIIPN 96 (608)
Q Consensus 31 ~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~------------~~~~--~~~~~~~~y~t~R~f~~~~~~~~cY~~~~ 96 (608)
.++||||++.. +|..|.+|.+|. ++.+|... .... ..+..+.+|+|.|+-+. .+.|.||+
T Consensus 2 ~~~IN~Gg~~~-~~~~g~~w~~D~-~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~ 75 (174)
T PF11721_consen 2 VLRINAGGPAY-TDSSGIVWEADQ-YYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV 75 (174)
T ss_dssp EEEEEETSSSE-EETTTEEE-SSS-SSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred EEEEECCCCcc-cCCCCCEEcCCC-CCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence 37899999865 778999999965 44333320 0011 11223579999999754 38999997
Q ss_pred CCCceeEEEEEeecCCCCC-----CCCCCcEEEEECCEEEEecCCCCCcccCCC-ceEEEE-EEEeeCCeEEEEEee---
Q 007307 97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS--- 166 (608)
Q Consensus 97 ~~~~~yliRl~F~y~nyd~-----~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~-~~~~e~-~~~~~~~~l~v~f~~--- 166 (608)
.++|.|.|||||....+.. ....++|||+++|..++++||++.+++... ++++++ -+.+.++.|.|+|..
T Consensus 76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~ 155 (174)
T PF11721_consen 76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK 155 (174)
T ss_dssp -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence 6999999999995332222 123789999999999999999988775544 677877 556789999999985
Q ss_pred --------cCCCCceeeee
Q 007307 167 --------FATDPPVIASL 177 (608)
Q Consensus 167 --------~~~~~pfIs~i 177 (608)
...+.|.||||
T Consensus 156 ~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 156 GTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp SEEEEEEESSSSSSSEEEE
T ss_pred CcEEeeccccCCCcEEeeC
Confidence 34566888887
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.55 E-value=2.9e-15 Score=141.77 Aligned_cols=143 Identities=24% Similarity=0.384 Sum_probs=84.2
Q ss_pred eeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeee-ccceeeCCCCCCCCChHHHHHHHHccCCceEEEE
Q 007307 201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT-TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279 (608)
Q Consensus 201 ~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~i~-t~~~i~~~~~~~~~~P~~V~~Ta~~~~~~lt~~~ 279 (608)
++|+||||.. + +|..++.|.+|..|..+.+.- ..... ...........+...+..+|||+|.....++|.+
T Consensus 2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~y-~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~i 73 (174)
T PF11721_consen 2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWGY-YVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDI 73 (174)
T ss_dssp EEEEEETSSS------E-EETTTEEE-SSSSSTTSS------------SSTTS--TTS-HHHHHTTT-----SSSEEEEE
T ss_pred EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCccc-ccccccccccccccccccCCCchhhhHhhcCCCCceEEEE
Confidence 5899999652 2 577899999999887443300 00000 0000011111223356799999999644799999
Q ss_pred EecCCCcEEEEEEeeeccccc----cCCcceEEEEEECCe-eeceeeeecccCCcc-ceeeeeeEeecCCceEEEEec
Q 007307 280 AVDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSFA-AYSWHYVAKNLSSTELTVKLV 351 (608)
Q Consensus 280 ~v~~~~~y~v~LhF~ei~~~~----~~~~~r~F~V~in~~-~l~~~di~~~~g~~~-~~~~~~~~~~l~~n~L~~~l~ 351 (608)
|+.+++.|.|+|||+|+.... ...++|+|||++||+ .++++||...+|+.. +....+......++.|.+.|.
T Consensus 74 p~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~ 151 (174)
T PF11721_consen 74 PVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFV 151 (174)
T ss_dssp E--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEE
T ss_pred ecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEE
Confidence 976778899999999987643 236899999999998 789999999888754 555555334456777887777
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=1.3e-11 Score=148.06 Aligned_cols=65 Identities=35% Similarity=0.559 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCch
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE 490 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 490 (608)
|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+.++++|+.|++++|+++|.+|.
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 44455555555555555555555555555555555555555555555555555555555555553
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.25 E-value=1.4e-11 Score=147.61 Aligned_cols=126 Identities=32% Similarity=0.508 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHhcCCCCC--CCCCC-CCCCCCCCccCcceeecCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCC
Q 007307 375 VPEQVIAMRALKESLRVPDR--MGWNG-DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLV 451 (608)
Q Consensus 375 ~~~~~~~L~~lk~~~~~~~~--~~w~~-~pc~p~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~ 451 (608)
.|.|..+|+++|+.+..+.. .+|+. +.| |.|.|+.|... .+++.|+|++|+++|.+|..+..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~-----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADV-----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCC-----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence 57899999999998865432 47864 455 69999999753 2578899999999999999999999999
Q ss_pred eecccCCcCCCCCCcccc-CCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCCCC
Q 007307 452 NLDLSDNQFTGSIPDSLT-SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 513 (608)
Q Consensus 452 ~L~Ls~N~l~G~iP~~l~-~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~~ 513 (608)
.|+|++|+++|.+|..+. ++++|++|+|++|+++|.+|... + ..++.|++++|.+....
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~--l-~~L~~L~Ls~n~~~~~~ 156 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--I-PNLETLDLSNNMLSGEI 156 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccc--c-CCCCEEECcCCcccccC
Confidence 999999999999997765 88888888888888888877632 2 35677777777665433
No 8
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.94 E-value=4.4e-09 Score=110.75 Aligned_cols=151 Identities=22% Similarity=0.306 Sum_probs=96.1
Q ss_pred cEEEccCCCC---CC-cCCCCceEeeC---CCC--eecCCccc--c-cCCCCCCCCCCceeeecCCCC-CCCccEEeecC
Q 007307 31 SYRIDCGSAT---ST-TDPFNTTWQAD---DRY--YTSGATSI--V-SEPLHFRFPHEKTLRYFPPSS-GKKNCYIIPNL 97 (608)
Q Consensus 31 ~~~IdCG~~~---~~-~d~~~~~w~~D---d~~--~~~g~~~~--~-~~~~~~~~~~y~t~R~f~~~~-~~~~cY~~~~~ 97 (608)
-+|+|||++. .+ .|.-.|.|.+. ... +++..+.. . ......|..+|+|||.-...+ .-..+|.+ +.
T Consensus 180 ~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~ 258 (347)
T PF12819_consen 180 VYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VD 258 (347)
T ss_pred EEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CC
Confidence 3789999975 22 55668999962 111 11111111 0 112345677899999976532 12337777 76
Q ss_pred CCceeEEEEEeecCCCC-CCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEeeC-CeEEEEEeecCCC--Cce
Q 007307 98 PPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATD--PPV 173 (608)
Q Consensus 98 ~~~~yliRl~F~y~nyd-~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~-~~l~v~f~~~~~~--~pf 173 (608)
++..|+||+||..=... .....+.|+|++||..+.+.++.........+.++++++.+.+ +.+.|+|.++..+ .|+
T Consensus 259 ~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppi 338 (347)
T PF12819_consen 259 PGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPI 338 (347)
T ss_pred CCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCce
Confidence 77799999999532111 1122689999999998776444421122234457888877655 5799999998765 499
Q ss_pred eeeeeeEec
Q 007307 174 IASLEVQQI 182 (608)
Q Consensus 174 Is~iEl~~l 182 (608)
|||+||..+
T Consensus 339 LNalEIy~v 347 (347)
T PF12819_consen 339 LNALEIYKV 347 (347)
T ss_pred eEeeeeEeC
Confidence 999999864
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.51 E-value=8.4e-09 Score=105.39 Aligned_cols=159 Identities=23% Similarity=0.368 Sum_probs=119.7
Q ss_pred eeEeecCCceEEEEecccchhhHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCcceee
Q 007307 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (608)
Q Consensus 336 ~~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~gv~c 415 (608)
++++.+.+|++. ++|+..+. +.++.-+.++.+....+|.+...+..++...- ......|
T Consensus 70 l~vl~~~~n~l~-~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~------------------s~n~~~e 128 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGE--LEALKSLNVSHNKLSELPEQIGSLISLVKLDC------------------SSNELKE 128 (565)
T ss_pred eeEEEeccchhh-hCCHHHHH--HHHHHHhhcccchHhhccHHHhhhhhhhhhhc------------------cccceee
Confidence 567778888876 77877665 44455556666777788999888888876331 1122222
Q ss_pred cCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhc
Q 007307 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 495 (608)
Q Consensus 416 ~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~ 495 (608)
-..+.+....+..++..+|+++ .+|+.+.++.+|..|++.+|++. ..|+..-+|+.|+.||+.+|-|. .+|..++.+
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l 205 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL 205 (565)
T ss_pred cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcch
Confidence 2222333456788899999999 89999999999999999999999 55555556999999999999887 899999887
Q ss_pred cCCCCeEeecCCCCCCCCCCCCCCC
Q 007307 496 GVHGGAFDLSGNKGLCGAPSLPSCP 520 (608)
Q Consensus 496 ~~~l~~l~l~~N~~~c~~p~~~~C~ 520 (608)
. ++..+++..|+..- .|.++.|+
T Consensus 206 ~-~L~~LyL~~Nki~~-lPef~gcs 228 (565)
T KOG0472|consen 206 E-SLELLYLRRNKIRF-LPEFPGCS 228 (565)
T ss_pred h-hhHHHHhhhccccc-CCCCCccH
Confidence 5 78888999998544 56778886
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.50 E-value=1.5e-08 Score=92.49 Aligned_cols=153 Identities=22% Similarity=0.346 Sum_probs=109.5
Q ss_pred eEeecCCceEEEEecccchhhHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCC-CCCCCCCCCCCCCCCccCcceee
Q 007307 337 VAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVP-DRMGWNGDPCAPTNWDAWEGITC 415 (608)
Q Consensus 337 ~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~-~~~~w~~~pc~p~~~~~w~gv~c 415 (608)
+.+.+++|+|+ .+||.... +-.+|++.+.+++...+|..+..|.+++-. ... +..+ -.|
T Consensus 36 TrLtLSHNKl~-~vppnia~--l~nlevln~~nnqie~lp~~issl~klr~l-nvgmnrl~-----~lp----------- 95 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELPTSISSLPKLRIL-NVGMNRLN-----ILP----------- 95 (264)
T ss_pred hhhhcccCcee-ecCCcHHH--hhhhhhhhcccchhhhcChhhhhchhhhhe-ecchhhhh-----cCc-----------
Confidence 45568899998 55666554 677999999999988999999999888752 211 1000 011
Q ss_pred cCCCCCceeEEEEEEcCCCCCCC-CCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhh
Q 007307 416 HPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 494 (608)
Q Consensus 416 ~~~~~~~~~~l~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~ 494 (608)
.+.+....|+.|||..|+|.. .+|..|-.++.|+.|.|+.|.|. .+|+.+++|++|+.|.+..|.|- ++|.+++.
T Consensus 96 --rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 96 --RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred --cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 111223457778888888863 46777888888888888888887 77888888888888888888877 68888877
Q ss_pred ccCCCCeEeecCCCCCCCCC
Q 007307 495 IGVHGGAFDLSGNKGLCGAP 514 (608)
Q Consensus 495 ~~~~l~~l~l~~N~~~c~~p 514 (608)
+. .++.+.+.||++.--.|
T Consensus 172 lt-~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 172 LT-RLRELHIQGNRLTVLPP 190 (264)
T ss_pred HH-HHHHHhcccceeeecCh
Confidence 75 67777788887655444
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.46 E-value=1.8e-08 Score=91.95 Aligned_cols=85 Identities=28% Similarity=0.337 Sum_probs=74.1
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..+++.|-||+|+++ .+|+.|..|.+|+.|++++|++. .+|.+++.|++|+.|+++-|+|. .+|..++.++ .++.+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p-~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP-ALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc-hhhhh
Confidence 346788999999999 88999999999999999999998 89999999999999999999998 7888888875 78888
Q ss_pred eecCCCCCC
Q 007307 503 DLSGNKGLC 511 (608)
Q Consensus 503 ~l~~N~~~c 511 (608)
|+..|++.-
T Consensus 108 dltynnl~e 116 (264)
T KOG0617|consen 108 DLTYNNLNE 116 (264)
T ss_pred hcccccccc
Confidence 888887543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.36 E-value=1.1e-07 Score=102.06 Aligned_cols=85 Identities=25% Similarity=0.339 Sum_probs=73.2
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCcc-ccCCCCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDS-LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
+.-|+.||||+|+|. ..|..+..-+++..|+||+|++. +||.. +.+|+.|-.||||+|+|. .+|+.+.++. .|+.
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~Lqt 177 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQT 177 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhh
Confidence 345788999999999 88999999999999999999998 78854 578999999999999998 6888877765 7889
Q ss_pred EeecCCCCCC
Q 007307 502 FDLSGNKGLC 511 (608)
Q Consensus 502 l~l~~N~~~c 511 (608)
|+|++|++..
T Consensus 178 L~Ls~NPL~h 187 (1255)
T KOG0444|consen 178 LKLSNNPLNH 187 (1255)
T ss_pred hhcCCChhhH
Confidence 9999999754
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.36 E-value=2.1e-07 Score=95.32 Aligned_cols=126 Identities=23% Similarity=0.338 Sum_probs=89.3
Q ss_pred cccccCCCCCCchHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCccCcceeecCCCCCceeEEEEEEcCCCCCCCCCCh
Q 007307 364 NYALVPNDLSTVPEQVIAMRALKESLRVPDR-MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISD 442 (608)
Q Consensus 364 i~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~-~~w~~~pc~p~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~ 442 (608)
+..+..++..++|.++..+..+...+..... .+|-+. .-| ...+++.|+|++|-|. .+|.
T Consensus 392 ~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~------------~l~------~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 392 SVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL------------ELS------QLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred EEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH------------HHH------hhhcceeeecccchhh-hcch
Confidence 3445556677889988888887775544332 344321 112 1235667777777776 7787
Q ss_pred hhcccccCCeecccCCcCC----------------------CCCCcc-ccCCCCCcEEEcccccccccCchhhhhccCCC
Q 007307 443 KISLLSNLVNLDLSDNQFT----------------------GSIPDS-LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHG 499 (608)
Q Consensus 443 ~~~~L~~L~~L~Ls~N~l~----------------------G~iP~~-l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l 499 (608)
+++.+..|+.||+|+|+|. |.+++. +.+|.+|..|||.+|.+. .||..++.+. ++
T Consensus 453 e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt-nL 530 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT-NL 530 (565)
T ss_pred hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc-ce
Confidence 8888777888877777652 344444 888999999999999998 7899998886 89
Q ss_pred CeEeecCCCCC
Q 007307 500 GAFDLSGNKGL 510 (608)
Q Consensus 500 ~~l~l~~N~~~ 510 (608)
+++++.||+|.
T Consensus 531 ~hLeL~gNpfr 541 (565)
T KOG0472|consen 531 RHLELDGNPFR 541 (565)
T ss_pred eEEEecCCccC
Confidence 99999999875
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=1.5e-07 Score=72.80 Aligned_cols=59 Identities=36% Similarity=0.496 Sum_probs=48.2
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccc
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 484 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l 484 (608)
|+.|++++|+++..-+..|..+++|+.|++++|.+....|..|.+|++|+.|++++|+|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 67788888888855556788888888888888888866667888888888888888875
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.19 E-value=3.9e-07 Score=97.84 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=112.0
Q ss_pred EeecCCceEE-EEecccchhhHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCcceeec
Q 007307 338 AKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCH 416 (608)
Q Consensus 338 ~~~l~~n~L~-~~l~~~~~~piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~gv~c~ 416 (608)
-+++++|.++ +.||..... +..+.-+++.......+|.++.+|.+|... ....+ ... .-.|
T Consensus 11 GvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHL-s~~HN-~L~----------~vhG---- 72 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNRTKLEQVPEELSRLQKLEHL-SMAHN-QLI----------SVHG---- 72 (1255)
T ss_pred cccccCCcCCCCcCchhHHH--hhheeEEEechhhhhhChHHHHHHhhhhhh-hhhhh-hhH----------hhhh----
Confidence 4567788888 467766554 556667777777778899999999888752 22111 000 0001
Q ss_pred CCCCCceeEEEEEEcCCCCCC-CCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhc
Q 007307 417 PNKDETAVVISQIDLGSQGLK-GYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 495 (608)
Q Consensus 417 ~~~~~~~~~l~~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~ 495 (608)
....+..|+.+.+..|+|. ..||++|-.|..|+.||||+|+|. ..|..+...+++-+|+||+|++. .||..+..-
T Consensus 73 --ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfin 148 (1255)
T KOG0444|consen 73 --ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFIN 148 (1255)
T ss_pred --hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHh
Confidence 0012234678888999986 358999999999999999999999 99999999999999999999998 789876543
Q ss_pred cCCCCeEeecCCCCCCCC
Q 007307 496 GVHGGAFDLSGNKGLCGA 513 (608)
Q Consensus 496 ~~~l~~l~l~~N~~~c~~ 513 (608)
..-|-.|||++|++.--+
T Consensus 149 LtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred hHhHhhhccccchhhhcC
Confidence 334567899999976533
No 16
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.09 E-value=1.6e-06 Score=66.93 Aligned_cols=61 Identities=34% Similarity=0.429 Sum_probs=52.3
Q ss_pred ccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCC
Q 007307 448 SNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 509 (608)
Q Consensus 448 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~ 509 (608)
++|+.|+|++|+++..-+..|..+++|++|++++|+++..-|..+..+. +++.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCcC
Confidence 4789999999999955557899999999999999999976666777765 899999999973
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.08 E-value=1.3e-06 Score=93.57 Aligned_cols=86 Identities=21% Similarity=0.151 Sum_probs=71.8
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..++.|+|+.|+++..-...+-+|+.|+.|+||+|.+...-+++++-+++|+.|+|++|+++.--+..+..+. .|+.|+
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~Ln 347 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELN 347 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH-Hhhhhc
Confidence 3578899999999977677788899999999999999988889999999999999999999965555555554 778888
Q ss_pred ecCCCCC
Q 007307 504 LSGNKGL 510 (608)
Q Consensus 504 l~~N~~~ 510 (608)
|+.|...
T Consensus 348 Ls~Nsi~ 354 (873)
T KOG4194|consen 348 LSHNSID 354 (873)
T ss_pred ccccchH
Confidence 8888754
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.93 E-value=2.6e-06 Score=95.75 Aligned_cols=153 Identities=27% Similarity=0.346 Sum_probs=79.7
Q ss_pred eeeeEeecCCceEEEEecccchhhHhhh-hhcccccCCCCCCchH-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCc
Q 007307 334 WHYVAKNLSSTELTVKLVPVVGAALISG-LENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (608)
Q Consensus 334 ~~~~~~~l~~n~L~~~l~~~~~~piLna-lEi~~~~~~~~~~~~~-~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~ 411 (608)
+.+..+++..|+|. .+|+..- .++++ ++.+..+.+...+.|. +-..+..+...+-.. +--+|.|.|
T Consensus 310 ~sL~tLdL~~N~L~-~lp~~~l-~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan---N~Ltd~c~p------- 377 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLP-SLPDNFL-AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN---NHLTDSCFP------- 377 (1081)
T ss_pred ceeeeeeehhcccc-ccchHHH-hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc---Ccccccchh-------
Confidence 34566777777765 6666332 33444 5555555554444442 111122222222111 112344532
Q ss_pred ceeecCCCCCceeEEEEEEcCCCCCCCCCCh-hhcccccCCeecccCCcCCCCCCc----------------------cc
Q 007307 412 GITCHPNKDETAVVISQIDLGSQGLKGYISD-KISLLSNLVNLDLSDNQFTGSIPD----------------------SL 468 (608)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~G~iP~----------------------~l 468 (608)
-..|. .+|+.|+|++|+|. .+|. .+.+|..|++|+||+|.|+ .+|. ++
T Consensus 378 ~l~~~-------~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 378 VLVNF-------KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred hhccc-------cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhh
Confidence 22222 35666777777666 4443 3566666666666666665 4444 45
Q ss_pred cCCCCCcEEEccccccccc-CchhhhhccCCCCeEeecCCCC
Q 007307 469 TSSSKLQLVLLNNNLLEGR-VPEELYSIGVHGGAFDLSGNKG 509 (608)
Q Consensus 469 ~~l~~L~~L~Ls~N~l~G~-iP~~l~~~~~~l~~l~l~~N~~ 509 (608)
.+++.|+.+|||.|+|+-. +|... .. +.|+.|||+||..
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~-p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEAL-PS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhC-CC-cccceeeccCCcc
Confidence 5566677777777777632 23222 11 4688888888874
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.87 E-value=1.1e-05 Score=90.96 Aligned_cols=154 Identities=23% Similarity=0.267 Sum_probs=100.2
Q ss_pred eeeeEeecCCceEEEEecccchhhHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCcce
Q 007307 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (608)
Q Consensus 334 ~~~~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~gv 413 (608)
..+..++++.++++ .+|...+. +..+|.+.+..+....+|.+...+.+++...---...... +| .-.|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yi-p~-------~le~- 308 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYI-PP-------FLEG- 308 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhC-CC-------cccc-
Confidence 34566677777776 55633333 4557777777777777888888877776532110000100 00 1111
Q ss_pred eecCCCCCceeEEEEEEcCCCCCCCCCChhhc--------------------------ccccCCeecccCCcCCCCCCcc
Q 007307 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKIS--------------------------LLSNLVNLDLSDNQFTGSIPDS 467 (608)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~--------------------------~L~~L~~L~Ls~N~l~G~iP~~ 467 (608)
...|+.|+|..|+|. .+|+.+- .++.|+.|.|.+|.|+-.+=+.
T Consensus 309 ---------~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 309 ---------LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred ---------cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 235788899888887 5555321 1345677899999999887777
Q ss_pred ccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCC
Q 007307 468 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGL 510 (608)
Q Consensus 468 l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~ 510 (608)
+.+.++|+.|+|++|+|. .+|+....-...++.|+++||++.
T Consensus 379 l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh
Confidence 889999999999999997 688765443346788899999853
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.86 E-value=4.7e-06 Score=85.60 Aligned_cols=98 Identities=19% Similarity=0.240 Sum_probs=70.9
Q ss_pred eeecCCCC-----CceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccc-ccccc
Q 007307 413 ITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNN-NLLEG 486 (608)
Q Consensus 413 v~c~~~~~-----~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~-N~l~G 486 (608)
|.|...+. .-+...+.|+|..|+++...|..|+.+++|+.||||+|+++-.-|++|.+|.+|..|-+-+ |+++
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence 77765331 1234567899999999966666799999999999999999999999999999988876655 8888
Q ss_pred cCchhhhhccCCCCeEeecCCCCCC
Q 007307 487 RVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 487 ~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
.+|.....-..+++.|.+.-|...|
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~C 154 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINC 154 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcc
Confidence 6776433211234444444455444
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.80 E-value=2e-05 Score=84.71 Aligned_cols=85 Identities=27% Similarity=0.270 Sum_probs=71.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
...+.||+++|+|+..-+..|-+|++|+.++|.+|.|+ .||.......+|+.|+|.+|.++..--+.+..+. .++.+|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhh
Confidence 34577999999999777888999999999999999999 9998877778899999999999865555665554 678888
Q ss_pred ecCCCCC
Q 007307 504 LSGNKGL 510 (608)
Q Consensus 504 l~~N~~~ 510 (608)
|+.|...
T Consensus 156 LSrN~is 162 (873)
T KOG4194|consen 156 LSRNLIS 162 (873)
T ss_pred hhhchhh
Confidence 8888754
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.77 E-value=5.8e-06 Score=88.47 Aligned_cols=167 Identities=20% Similarity=0.301 Sum_probs=100.2
Q ss_pred eEeecCCceEEEEecccchhhHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCC-CCC-CCC--CccCcc
Q 007307 337 VAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGD-PCA-PTN--WDAWEG 412 (608)
Q Consensus 337 ~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~~~w~~~-pc~-p~~--~~~w~g 412 (608)
+..+++.|++. .+|..... +-.+|.+.+..+...++|..+..|.++.-.....++.+--.+ -|. |.. .-.-+-
T Consensus 78 ~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCc
Confidence 34556667665 44544332 344666666667777788877777666542222121111111 121 000 001122
Q ss_pred eeecCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhh
Q 007307 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 492 (608)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l 492 (608)
++|.+...+....+..||.+.|.+. .+|+.++.|.+|+.|++..|++. .+|+++..|+ |..||+|.|+++ .||-.+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhh
Confidence 3344333334445666777777777 67777777777777777777777 6777776443 778888888887 688888
Q ss_pred hhccCCCCeEeecCCCCCC
Q 007307 493 YSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 493 ~~~~~~l~~l~l~~N~~~c 511 (608)
.++. .|+.+-|.+|++..
T Consensus 231 r~m~-~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 231 RKMR-HLQVLQLENNPLQS 248 (722)
T ss_pred hhhh-hheeeeeccCCCCC
Confidence 7775 78888888888754
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.68 E-value=2.9e-05 Score=73.28 Aligned_cols=81 Identities=28% Similarity=0.370 Sum_probs=34.3
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccc-cCCCCCcEEEcccccccccC-chhhhhccCCCCeE
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSL-TSSSKLQLVLLNNNLLEGRV-PEELYSIGVHGGAF 502 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~Ls~N~l~G~i-P~~l~~~~~~l~~l 502 (608)
+++.|+|++|.++ .+. .+..|+.|+.|+|++|.++ .+.+.+ ..+++|+.|+|++|++...- -..+..+. .|+.+
T Consensus 43 ~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~-~L~~L 118 (175)
T PF14580_consen 43 KLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP-KLRVL 118 (175)
T ss_dssp T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T-T--EE
T ss_pred CCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC-Cccee
Confidence 4788899999888 454 5777888999999999988 565444 46888999999999886421 12344443 78888
Q ss_pred eecCCCC
Q 007307 503 DLSGNKG 509 (608)
Q Consensus 503 ~l~~N~~ 509 (608)
++.+||.
T Consensus 119 ~L~~NPv 125 (175)
T PF14580_consen 119 SLEGNPV 125 (175)
T ss_dssp E-TT-GG
T ss_pred eccCCcc
Confidence 8888884
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.68 E-value=1.4e-05 Score=82.31 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=80.5
Q ss_pred ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
.+.+|+.|+|++|++++.-+..|..+..|+.|.|..|+|.-.--..|.++..|+.|+|.+|+++-.-|..+..+. ++..
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-~l~~ 350 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-SLST 350 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc-eeee
Confidence 356899999999999998899999999999999999999866566789999999999999999988888887765 7889
Q ss_pred EeecCCCCCC
Q 007307 502 FDLSGNKGLC 511 (608)
Q Consensus 502 l~l~~N~~~c 511 (608)
+++-.|++.|
T Consensus 351 l~l~~Np~~C 360 (498)
T KOG4237|consen 351 LNLLSNPFNC 360 (498)
T ss_pred eehccCcccC
Confidence 9999999998
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.61 E-value=5e-05 Score=71.74 Aligned_cols=83 Identities=28% Similarity=0.303 Sum_probs=28.9
Q ss_pred eEEEEEEcCCCCCCCCCChhhc-ccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKIS-LLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
.+++.|+|++|.++ .|. .++ .|.+|+.|||++|.++ .++ .+..++.|+.|++++|+++ .+.+.+....+.++.|
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 45789999999999 554 566 5889999999999999 554 4788999999999999999 4655554323489999
Q ss_pred eecCCCCCC
Q 007307 503 DLSGNKGLC 511 (608)
Q Consensus 503 ~l~~N~~~c 511 (608)
++++|+...
T Consensus 94 ~L~~N~I~~ 102 (175)
T PF14580_consen 94 YLSNNKISD 102 (175)
T ss_dssp E-TTS---S
T ss_pred ECcCCcCCC
Confidence 999998643
No 26
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=4.7e-05 Score=54.53 Aligned_cols=37 Identities=41% Similarity=0.598 Sum_probs=27.2
Q ss_pred ccCCeecccCCcCCCCCCccccCCCCCcEEEccccccc
Q 007307 448 SNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 448 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 485 (608)
++|++|+|++|+++ .+|+.+++|++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777888888887 67777788888888888888777
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.52 E-value=0.00031 Score=80.87 Aligned_cols=72 Identities=24% Similarity=0.239 Sum_probs=45.3
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+++.|++++|+|+ .+|. .+++|+.|+|++|+|+ .+|.. .++|+.|+|++|+|+ .+|... ..+..|++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp----~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP----SGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch----hhcCEEEC
Confidence 5677888888888 4664 2577888888888888 56643 345666677776666 344321 13344555
Q ss_pred cCCCC
Q 007307 505 SGNKG 509 (608)
Q Consensus 505 ~~N~~ 509 (608)
++|++
T Consensus 290 s~N~L 294 (788)
T PRK15387 290 FGNQL 294 (788)
T ss_pred cCCcc
Confidence 55543
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.46 E-value=1.4e-05 Score=85.73 Aligned_cols=133 Identities=20% Similarity=0.318 Sum_probs=88.2
Q ss_pred eeEeecCCceEEEEecccchhhHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCcceee
Q 007307 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (608)
Q Consensus 336 ~~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~gv~c 415 (608)
++.++++.|+++ .+|..... =.+.++-++++....+|.+++-+..+.......+.. .. .
T Consensus 123 lt~l~ls~NqlS-~lp~~lC~---lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei--~s---l------------ 181 (722)
T KOG0532|consen 123 LTFLDLSSNQLS-HLPDGLCD---LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI--QS---L------------ 181 (722)
T ss_pred HHHhhhccchhh-cCChhhhc---CcceeEEEecCccccCCcccccchhHHHhhhhhhhh--hh---c------------
Confidence 345566777665 44444321 124455566667777888877555554422111100 00 0
Q ss_pred cCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhh
Q 007307 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 494 (608)
Q Consensus 416 ~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~ 494 (608)
....+....++.|++..|++. .+|.+++.|+ |..||+|.|+++ .||-.|-+|+.|++|-|.+|-|. +-|..+..
T Consensus 182 -psql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~ 255 (722)
T KOG0532|consen 182 -PSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICE 255 (722)
T ss_pred -hHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHh
Confidence 001112345778899999999 8999999554 899999999999 99999999999999999999998 45666653
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.43 E-value=0.00054 Score=79.07 Aligned_cols=76 Identities=30% Similarity=0.371 Sum_probs=40.1
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.++.|+|++|+|+ .+|..+. .+|+.|+|++|+|+ .+|..+. .+|+.|+|++|++. .+|..+. ..++.|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEEC
Confidence 3556666666666 4555443 35666666666665 4554432 24555555555555 4554432 13445555
Q ss_pred cCCCCC
Q 007307 505 SGNKGL 510 (608)
Q Consensus 505 ~~N~~~ 510 (608)
++|++.
T Consensus 270 s~N~L~ 275 (754)
T PRK15370 270 FHNKIS 275 (754)
T ss_pred cCCccC
Confidence 555443
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.25 E-value=0.00041 Score=80.03 Aligned_cols=79 Identities=22% Similarity=0.350 Sum_probs=40.0
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhcc---CCCCe
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG---VHGGA 501 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~---~~l~~ 501 (608)
.|+.|+|++|+|+ .+|..+. +.|+.|+|++|+|+ .+|+.+. ..|+.|++++|+|+ .+|..+..+. ..+..
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTR 419 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccE
Confidence 3555555555555 3454432 45555666666555 4454433 24555566666655 4454433221 13445
Q ss_pred EeecCCCCC
Q 007307 502 FDLSGNKGL 510 (608)
Q Consensus 502 l~l~~N~~~ 510 (608)
+++.+|++.
T Consensus 420 L~L~~Npls 428 (754)
T PRK15370 420 IIVEYNPFS 428 (754)
T ss_pred EEeeCCCcc
Confidence 566666654
No 31
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.13 E-value=0.00012 Score=65.17 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=60.2
Q ss_pred eEEEEEEcCCCCCCCCCChhhccc-ccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLL-SNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
.+|+..+|++|.|. ..|+.|... +.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|..+..+. ++..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~-~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLI-KLDML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHH-hHHHh
Confidence 35778899999998 677776654 57888999999998 88988999999999999999988 4566665543 44444
Q ss_pred eecCC
Q 007307 503 DLSGN 507 (608)
Q Consensus 503 ~l~~N 507 (608)
+..+|
T Consensus 129 ds~~n 133 (177)
T KOG4579|consen 129 DSPEN 133 (177)
T ss_pred cCCCC
Confidence 44444
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.10 E-value=0.00049 Score=79.22 Aligned_cols=77 Identities=26% Similarity=0.291 Sum_probs=48.0
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.|+|++|.|++ +|.. .++|+.|+|++|+|+ .+|... .+|+.|+|++|+|+ .+|..+..+. .+..+++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~-~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLS-SETTVNL 452 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhcc-CCCeEEC
Confidence 35667777777663 5532 245666777777766 356432 34566777777776 5677666654 6667777
Q ss_pred cCCCCCC
Q 007307 505 SGNKGLC 511 (608)
Q Consensus 505 ~~N~~~c 511 (608)
++|++.+
T Consensus 453 s~N~Ls~ 459 (788)
T PRK15387 453 EGNPLSE 459 (788)
T ss_pred CCCCCCc
Confidence 7777654
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.07 E-value=0.00027 Score=50.59 Aligned_cols=36 Identities=28% Similarity=0.485 Sum_probs=31.9
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCC
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFT 461 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~ 461 (608)
+|+.|+|++|+++ .+|+++++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3688999999999 78989999999999999999998
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.07 E-value=0.00018 Score=71.70 Aligned_cols=82 Identities=21% Similarity=0.185 Sum_probs=59.5
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
.+.++.|++|.|++. .+. .+..|++|++||||+|.|+ .+-.+-.+|.+++.|.|+.|.+.. -+.+..+. ++..+
T Consensus 306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLY-SLvnL 379 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLY-SLVNL 379 (490)
T ss_pred ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhh-hheec
Confidence 456788999999887 444 3788888999999999887 666666677788888888887752 12344444 56778
Q ss_pred eecCCCCC
Q 007307 503 DLSGNKGL 510 (608)
Q Consensus 503 ~l~~N~~~ 510 (608)
|+.+|+..
T Consensus 380 Dl~~N~Ie 387 (490)
T KOG1259|consen 380 DLSSNQIE 387 (490)
T ss_pred cccccchh
Confidence 88888753
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.91 E-value=0.00028 Score=70.36 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=64.5
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.+|||+|.++ .|..+..-++.++.|++|+|.+. .+- .++.|++|+.||||+|.|+ .+-.+-..+- +.+.+.++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLG-NIKtL~La 360 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLG-NIKTLKLA 360 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhc-CEeeeehh
Confidence 688999999999 78888999999999999999998 443 4889999999999999998 3433333332 55688899
Q ss_pred CCCCC
Q 007307 506 GNKGL 510 (608)
Q Consensus 506 ~N~~~ 510 (608)
+|.+.
T Consensus 361 ~N~iE 365 (490)
T KOG1259|consen 361 QNKIE 365 (490)
T ss_pred hhhHh
Confidence 88753
No 36
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.82 E-value=8.5e-05 Score=81.78 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=55.2
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCcc----------------------ccCCCCCcEEEccc
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDS----------------------LTSSSKLQLVLLNN 481 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~----------------------l~~l~~L~~L~Ls~ 481 (608)
..++.|||++|+++- .. .+..|+.|++|||++|+|. .+|.. +.+|.+|+.|||++
T Consensus 187 ~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 357889999999883 33 7888899999999999987 55542 33455666666666
Q ss_pred ccccccCc-hhhhhccCCCCeEeecCCCCCC
Q 007307 482 NLLEGRVP-EELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 482 N~l~G~iP-~~l~~~~~~l~~l~l~~N~~~c 511 (608)
|-|++.-- ..+..+. .|..|.|.||++-|
T Consensus 264 Nll~~hseL~pLwsLs-~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 264 NLLSEHSELEPLWSLS-SLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhcchhhhHHHHHH-HHHHHhhcCCcccc
Confidence 66654311 0111121 45677889999877
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.77 E-value=0.00099 Score=71.66 Aligned_cols=80 Identities=29% Similarity=0.424 Sum_probs=60.6
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+++.|.+. .+|..++.++.|+.|++++|+++ .+|...+.++.|+.|++++|+++ .+|..+... ..++.+.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-SALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh-hhhhhhhh
Confidence 5778888888888 77777888888888888888888 77776667888888888888887 677654322 24667777
Q ss_pred cCCC
Q 007307 505 SGNK 508 (608)
Q Consensus 505 ~~N~ 508 (608)
++|+
T Consensus 217 ~~N~ 220 (394)
T COG4886 217 SNNS 220 (394)
T ss_pred cCCc
Confidence 7774
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.67 E-value=0.00077 Score=69.88 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCCCC----CCChhhccc-ccCCeecccCCcCCCC----CCccccCCCCCcEEEcccccccccC----chh
Q 007307 425 VISQIDLGSQGLKG----YISDKISLL-SNLVNLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEGRV----PEE 491 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g----~ip~~~~~L-~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~G~i----P~~ 491 (608)
+|+.|++++|++++ .+...+..+ ++|+.|+|++|.+++. ++..+..+.+|+.|++++|.+++.. +..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 37778888887773 233345556 7788888888887743 3334566677888888888887532 222
Q ss_pred hhhccCCCCeEeecCCCCC
Q 007307 492 LYSIGVHGGAFDLSGNKGL 510 (608)
Q Consensus 492 l~~~~~~l~~l~l~~N~~~ 510 (608)
+... ..++.+++++|.+.
T Consensus 189 l~~~-~~L~~L~L~~n~i~ 206 (319)
T cd00116 189 LKAN-CNLEVLDLNNNGLT 206 (319)
T ss_pred HHhC-CCCCEEeccCCccC
Confidence 3322 26778888877653
No 39
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.65 E-value=0.0031 Score=77.24 Aligned_cols=81 Identities=23% Similarity=0.232 Sum_probs=38.1
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.|+|+++...+.+| .++.+++|+.|+|++|.....+|..+++|++|+.|++++|..-+.+|..+ .+ .+|+.|+++
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l-~sL~~L~Ls 712 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL-KSLYRLNLS 712 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC-CCCCEEeCC
Confidence 4445554443333444 24445555555555544444555555555555555555543333444433 22 244555555
Q ss_pred CCCC
Q 007307 506 GNKG 509 (608)
Q Consensus 506 ~N~~ 509 (608)
+|..
T Consensus 713 gc~~ 716 (1153)
T PLN03210 713 GCSR 716 (1153)
T ss_pred CCCC
Confidence 5443
No 40
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.48 E-value=0.0036 Score=76.68 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=44.7
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|++. .++..+..+++|+.|+|++|...+.+|. ++.+++|+.|+|++|.....+|..+..+. +|+.|++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~-~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN-KLEDLDM 688 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC-CCCEEeC
Confidence 3555555555555 4555555555566666655544445553 45555566666655554455555555443 5555555
Q ss_pred cCCCCC
Q 007307 505 SGNKGL 510 (608)
Q Consensus 505 ~~N~~~ 510 (608)
++|..+
T Consensus 689 ~~c~~L 694 (1153)
T PLN03210 689 SRCENL 694 (1153)
T ss_pred CCCCCc
Confidence 554433
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.42 E-value=0.0012 Score=68.46 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=57.3
Q ss_pred EEEEEEcCCCCCCCC----CChhhcccccCCeecccCCcCCCC----CCccccCCCCCcEEEcccccccccCchhhhhc-
Q 007307 425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI- 495 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~- 495 (608)
+|+.|+|++|.+++. ++..+..+.+|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++.-...+...
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 578888888888853 333456667888888888888753 34445666788888888888875443333221
Q ss_pred --cCCCCeEeecCCCC
Q 007307 496 --GVHGGAFDLSGNKG 509 (608)
Q Consensus 496 --~~~l~~l~l~~N~~ 509 (608)
...++.+++++|++
T Consensus 218 ~~~~~L~~L~ls~n~l 233 (319)
T cd00116 218 ASLKSLEVLNLGDNNL 233 (319)
T ss_pred cccCCCCEEecCCCcC
Confidence 13577888887753
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.38 E-value=0.00064 Score=60.55 Aligned_cols=82 Identities=30% Similarity=0.384 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCCCCCChhhcc---cccCCeecccCCcCCCCCCccccCC-CCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 426 ISQIDLGSQGLKGYISDKISL---LSNLVNLDLSDNQFTGSIPDSLTSS-SKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~---L~~L~~L~Ls~N~l~G~iP~~l~~l-~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
+..++|++..|- .|+..... ...|+..+|++|.|. ..|+.|... +.++.|+|++|+++ .+|.++..++ .|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~-aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP-ALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhH-Hhhh
Confidence 456888888776 56665544 455666799999999 777777654 58999999999999 7999988876 8899
Q ss_pred EeecCCCCCC
Q 007307 502 FDLSGNKGLC 511 (608)
Q Consensus 502 l~l~~N~~~c 511 (608)
++++.|++.-
T Consensus 105 lNl~~N~l~~ 114 (177)
T KOG4579|consen 105 LNLRFNPLNA 114 (177)
T ss_pred cccccCcccc
Confidence 9999998755
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.20 E-value=0.0034 Score=67.51 Aligned_cols=83 Identities=35% Similarity=0.457 Sum_probs=71.6
Q ss_pred EEEEEEcCCCCCCCCCChhhcccc-cCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLKGYISDKISLLS-NLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~-~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.++.|++.+|.++ .||+....+. +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|....... .++.++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~-~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS-NLNNLD 192 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhh-hhhhee
Confidence 4789999999999 8999999895 9999999999999 88888999999999999999999 6776543333 678899
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.-
T Consensus 193 ls~N~i~~ 200 (394)
T COG4886 193 LSGNKISD 200 (394)
T ss_pred ccCCcccc
Confidence 99998644
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=96.18 E-value=0.0073 Score=42.90 Aligned_cols=35 Identities=40% Similarity=0.799 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHhcCC-CC--CCCCCC----CCCCCCCCccCcceeec
Q 007307 376 PEQVIAMRALKESLRV-PD--RMGWNG----DPCAPTNWDAWEGITCH 416 (608)
Q Consensus 376 ~~~~~~L~~lk~~~~~-~~--~~~w~~----~pc~p~~~~~w~gv~c~ 416 (608)
++|..+|++||..+.. +. ..+|+. +| |.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~------C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDP------CSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-C------CCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCC------eeeccEEeC
Confidence 6799999999998874 32 348974 34 489999995
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.84 E-value=0.0062 Score=71.64 Aligned_cols=78 Identities=23% Similarity=0.281 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.|||++|.=-+.+|..|+.|-+|++|+|+...+. .+|..+++|..|.+||+..+.-...+|..+..+. +|+.+.+
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-~Lr~L~l 649 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ-SLRVLRL 649 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc-cccEEEe
Confidence 4555666655544556666666666666666666665 5666666666666666665554434443333332 4444443
No 46
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.007 Score=36.29 Aligned_cols=19 Identities=58% Similarity=0.784 Sum_probs=8.8
Q ss_pred CCeecccCCcCCCCCCcccc
Q 007307 450 LVNLDLSDNQFTGSIPDSLT 469 (608)
Q Consensus 450 L~~L~Ls~N~l~G~iP~~l~ 469 (608)
|++|||++|+|+ .||++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444444444444 4444433
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.82 E-value=0.015 Score=68.40 Aligned_cols=86 Identities=22% Similarity=0.208 Sum_probs=73.2
Q ss_pred EEEEEEcCCCC--CCCCCChh-hcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 425 VISQIDLGSQG--LKGYISDK-ISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 425 ~l~~L~Ls~n~--l~g~ip~~-~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
.++.|-+..|. +. .++.+ |..++.|+.|||++|.=-+.+|..+++|-+|++|+|++..++ .+|..+..+. .+.+
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk-~L~~ 622 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK-KLIY 622 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH-hhhe
Confidence 57788888886 44 45544 788999999999999888899999999999999999999999 8999999886 7889
Q ss_pred EeecCCCCCCCC
Q 007307 502 FDLSGNKGLCGA 513 (608)
Q Consensus 502 l~l~~N~~~c~~ 513 (608)
|++..+..++..
T Consensus 623 Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 623 LNLEVTGRLESI 634 (889)
T ss_pred eccccccccccc
Confidence 999877755543
No 48
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=94.74 E-value=0.038 Score=54.84 Aligned_cols=66 Identities=30% Similarity=0.560 Sum_probs=53.3
Q ss_pred hHHHHHHHHccCCceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEEC-Ce-eeceeeeecccCC
Q 007307 261 PMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DK-NVTRVDIFNSVGS 328 (608)
Q Consensus 261 P~~V~~Ta~~~~~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in-~~-~l~~~di~~~~g~ 328 (608)
-..+|||+|.....+.|..+++....|.+.|-|||.. ...++..+|+|.+| .. .+..+||+..+|.
T Consensus 107 d~ily~ter~neetFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ldi~~~vg~ 174 (355)
T KOG3593|consen 107 DIILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALDIFDQVGD 174 (355)
T ss_pred hhhhhhhcccchhhhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccchhhhcCC
Confidence 4468999999655566777777778899999999975 45678999999999 66 6788999887773
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.71 E-value=0.0077 Score=66.95 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=52.1
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCch
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE 490 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 490 (608)
|...+.+.|.|. .+..++.-|+.|++|||++|++.-.- .+..|++|++|||+.|+|. .+|.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~ 226 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQ 226 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccc
Confidence 456778888888 78888999999999999999998443 7889999999999999998 4553
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.26 E-value=0.032 Score=33.38 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=17.3
Q ss_pred CCcEEEcccccccccCchhhh
Q 007307 473 KLQLVLLNNNLLEGRVPEELY 493 (608)
Q Consensus 473 ~L~~L~Ls~N~l~G~iP~~l~ 493 (608)
+|++|||++|+|+ .+|+.+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 5899999999999 8998754
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.09 E-value=0.044 Score=59.46 Aligned_cols=80 Identities=30% Similarity=0.297 Sum_probs=57.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..+..|++..|++. .+...+..+++|++|+|++|.++... .+..|+.|+.|++++|.++. +.. +..+ ..++.++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~~~-~~~l-~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-ISG-LESL-KSLKLLD 168 (414)
T ss_pred cceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-ccC-Cccc-hhhhccc
Confidence 45788999999988 45544778899999999999988443 35677779999999998873 222 2222 2566778
Q ss_pred ecCCCC
Q 007307 504 LSGNKG 509 (608)
Q Consensus 504 l~~N~~ 509 (608)
+++|..
T Consensus 169 l~~n~i 174 (414)
T KOG0531|consen 169 LSYNRI 174 (414)
T ss_pred CCcchh
Confidence 887764
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.99 E-value=0.077 Score=52.53 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=50.7
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCC--cCCCCCCccccCCCCCcEEEcccccccccCchhhhhcc--CCCCe
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDN--QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG--VHGGA 501 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N--~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~--~~l~~ 501 (608)
++.|.+.+..++. + ..+..|++|+.|.+|.| +.++.++.....+++|++|+|++|++. +++++..+. .+|..
T Consensus 45 le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhh
Confidence 4556666666552 1 24566888899999999 667777777777899999999999886 344433321 13445
Q ss_pred EeecC
Q 007307 502 FDLSG 506 (608)
Q Consensus 502 l~l~~ 506 (608)
|++.+
T Consensus 121 Ldl~n 125 (260)
T KOG2739|consen 121 LDLFN 125 (260)
T ss_pred hhccc
Confidence 55543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.61 E-value=0.19 Score=48.09 Aligned_cols=81 Identities=27% Similarity=0.306 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCc--hhhhhccCCCCeE
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP--EELYSIGVHGGAF 502 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP--~~l~~~~~~l~~l 502 (608)
....+||+.|.+. .++ .|..++.|..|.|++|+++-.-|.--.-++.|+.|.|.+|++.- +- ..+..++ .|+.|
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl~pLa~~p-~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDLDPLASCP-KLEYL 118 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhcchhccCC-cccee
Confidence 3567899999877 333 57778889999999999985555544456779999999998862 11 1233343 67788
Q ss_pred eecCCCC
Q 007307 503 DLSGNKG 509 (608)
Q Consensus 503 ~l~~N~~ 509 (608)
.+-+|+.
T Consensus 119 tll~Npv 125 (233)
T KOG1644|consen 119 TLLGNPV 125 (233)
T ss_pred eecCCch
Confidence 8888873
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.04 E-value=0.059 Score=54.23 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=54.9
Q ss_pred ccCcceeecCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCC-CCccccCCCCCcEEEccccccc
Q 007307 408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGS-IPDSLTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 408 ~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~ 485 (608)
..|.-+.|.-. .+++++.|+|+.|.|...|...-..+.+|+.|-|.+-.|.-. .-..+..++.++.|.+|.|++.
T Consensus 84 SdWseI~~ile---~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 84 SDWSEIGAILE---QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred ccHHHHHHHHh---cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 36887777542 356889999999999866654335677888888888877643 3355678888999999998554
No 55
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=0.05 Score=57.40 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCCCCCCC--hhhcccccCCeecccCCcCCC-CCCcc-----ccCCCCCcEEEccccccc
Q 007307 425 VISQIDLGSQGLKGYIS--DKISLLSNLVNLDLSDNQFTG-SIPDS-----LTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip--~~~~~L~~L~~L~Ls~N~l~G-~iP~~-----l~~l~~L~~L~Ls~N~l~ 485 (608)
.|+.|||++|++- ..+ ...+.|+.|..|+++.+.+.. .+|+. ....++|++|+++.|++.
T Consensus 247 ~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 247 TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred HHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 4566666666655 333 345566666666666666542 13332 334566666666666663
No 56
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=89.16 E-value=0.12 Score=56.06 Aligned_cols=80 Identities=26% Similarity=0.266 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
+..+++..|.+. .+-..+..+++|+.|++..|++. .|...+..|++|++|+|++|+++...+- ..+. .|+.|+++
T Consensus 74 l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l--~~l~-~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGL--STLT-LLKELNLS 148 (414)
T ss_pred HHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccch--hhcc-chhhheec
Confidence 455667777777 34455888999999999999999 5554478899999999999999865443 2333 47789999
Q ss_pred CCCCC
Q 007307 506 GNKGL 510 (608)
Q Consensus 506 ~N~~~ 510 (608)
+|++.
T Consensus 149 ~N~i~ 153 (414)
T KOG0531|consen 149 GNLIS 153 (414)
T ss_pred cCcch
Confidence 99854
No 57
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=88.98 E-value=0.26 Score=49.04 Aligned_cols=139 Identities=17% Similarity=0.190 Sum_probs=82.3
Q ss_pred hhhcccCCCCccEEEccCCCCCCcCCCCceEeeCCCCeecCCccccc-------CCCCCCCCCCceeeecCCCCCCCccE
Q 007307 20 LSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVS-------EPLHFRFPHEKTLRYFPPSSGKKNCY 92 (608)
Q Consensus 20 ~~~~~~~~~~~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~~-------~~~~~~~~~y~t~R~f~~~~~~~~cY 92 (608)
++.+++-|..--+-|+||++. .+|..|+.|-.|..- ..|-..... ....-....|+|.|+-.. .|.|
T Consensus 50 ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~~-~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgy 123 (355)
T KOG3593|consen 50 GAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPLE-GVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGY 123 (355)
T ss_pred cCccccCchhhhheeccCChh-hhcccceEeeccccc-cccccCCccceeeccccCChhhhhhhhhcccchh----hhcc
Confidence 344555554444679999974 477889999885411 112111110 000112358999999754 3789
Q ss_pred EeecCCCceeEEEEEeecCCCCCCCCCCcEEEEEC-CEEEEecCCCCCcccCCCceEEEEEEE-eeCCeEEEEEe
Q 007307 93 IIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGLARDGAYSDLFAF-VKDGELDLCFY 165 (608)
Q Consensus 93 ~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~-~~~~l~~~~~~~~~~~~~~~~~e~~~~-~~~~~l~v~f~ 165 (608)
..|+...|.|-+=+.|-.--|+.. ..-.|||-++ ...+.+.-|++...+......-|++-. ...+.|.+|-.
T Consensus 124 d~pik~dgdyalvlkfaevyF~~~-q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~ge 197 (355)
T KOG3593|consen 124 DVPIKEDGDYALVLKFAEVYFKTC-QHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGE 197 (355)
T ss_pred cccccCCCceehhhhHHHHHHHhh-hhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEee
Confidence 999988899988788831113431 2457999999 777777777665544332333354432 24445555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=88.97 E-value=0.55 Score=45.01 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=47.6
Q ss_pred cccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCC
Q 007307 447 LSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 509 (608)
Q Consensus 447 L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~ 509 (608)
+.+...+||++|.+. .+ +.|..++.|.+|.|++|+++ .|-..+..+...+..|.|.+|.+
T Consensus 41 ~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred ccccceecccccchh-hc-ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcch
Confidence 345678999999987 33 34678999999999999999 45556666666789999999884
No 59
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.90 E-value=0.019 Score=55.71 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=28.0
Q ss_pred EEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccc
Q 007307 428 QIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 484 (608)
Q Consensus 428 ~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l 484 (608)
.|+++.|.+. .+|.+++.+..+.++++.+|+++ ..|.+++++++++.+++-.|.|
T Consensus 69 rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 69 RLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 3444444444 44555555555555555555555 4555555555555555555544
No 60
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=87.85 E-value=0.37 Score=43.72 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=15.8
Q ss_pred CceEEehhhHHHHHHHHHHH-HHHhhhhcCCC
Q 007307 531 GGKIAIVILSLVLFSGVLLV-VYICCIRRGRN 561 (608)
Q Consensus 531 ~~~i~i~~~~~~~~~~~~~~-~~~~~~~r~~~ 561 (608)
..++++++++++.+++++++ ++++|+|+++.
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKT 80 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccC
Confidence 45666776665554444333 34444444443
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.24 E-value=0.35 Score=26.92 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=5.1
Q ss_pred CCcEEEccccccc
Q 007307 473 KLQLVLLNNNLLE 485 (608)
Q Consensus 473 ~L~~L~Ls~N~l~ 485 (608)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.65 E-value=1.7 Score=43.53 Aligned_cols=42 Identities=38% Similarity=0.519 Sum_probs=25.0
Q ss_pred hcccccCCeecccCCcCCCCCCcc----ccCCCCCcEEEccccccc
Q 007307 444 ISLLSNLVNLDLSDNQFTGSIPDS----LTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 444 ~~~L~~L~~L~Ls~N~l~G~iP~~----l~~l~~L~~L~Ls~N~l~ 485 (608)
+-.+++|+..+||.|-+.-..|+. ++.-+.|.+|.|++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 444566666666666666555543 344566667777766653
No 63
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=85.37 E-value=0.28 Score=52.03 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=60.8
Q ss_pred ceeEEEEEEcCCCCCCCCCC--hhhcccccCCeecccCCcCCCCCCccc-cCCCCCcEEEcccccccccCchhhhhccCC
Q 007307 422 TAVVISQIDLGSQGLKGYIS--DKISLLSNLVNLDLSDNQFTGSIPDSL-TSSSKLQLVLLNNNLLEGRVPEELYSIGVH 498 (608)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~ip--~~~~~L~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~ 498 (608)
.+.+++.||||.|-|...-| .-...|++|+.|+|+.|.|.-.+-... ..+++|+.|.|+.+.|+-.--..+....++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 34678899999998884332 224679999999999999874433222 356889999999999984322333333457
Q ss_pred CCeEeecCCC
Q 007307 499 GGAFDLSGNK 508 (608)
Q Consensus 499 l~~l~l~~N~ 508 (608)
+..|++.+|.
T Consensus 224 l~~L~L~~N~ 233 (505)
T KOG3207|consen 224 LEVLYLEANE 233 (505)
T ss_pred HHHhhhhccc
Confidence 7888888884
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.12 E-value=0.43 Score=47.36 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=48.6
Q ss_pred eEEEEEEcCCC--CCCCCCChhhcccccCCeecccCCcCCCCCCcc---ccCCCCCcEEEcccccccc
Q 007307 424 VVISQIDLGSQ--GLKGYISDKISLLSNLVNLDLSDNQFTGSIPDS---LTSSSKLQLVLLNNNLLEG 486 (608)
Q Consensus 424 ~~l~~L~Ls~n--~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~---l~~l~~L~~L~Ls~N~l~G 486 (608)
..|+.|.+|.| +.++.++.-.-.+++|++|+|++|++. ++++ +..+.+|..|++.++.-++
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCccc
Confidence 46899999999 777777777777899999999999987 2333 4566778899999887765
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.51 E-value=0.97 Score=27.92 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=10.5
Q ss_pred CCCcEEEcccccccccCchh
Q 007307 472 SKLQLVLLNNNLLEGRVPEE 491 (608)
Q Consensus 472 ~~L~~L~Ls~N~l~G~iP~~ 491 (608)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45566666666665 34443
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.51 E-value=0.97 Score=27.92 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=10.5
Q ss_pred CCCcEEEcccccccccCchh
Q 007307 472 SKLQLVLLNNNLLEGRVPEE 491 (608)
Q Consensus 472 ~~L~~L~Ls~N~l~G~iP~~ 491 (608)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45566666666665 34443
No 67
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.92 E-value=0.95 Score=27.96 Aligned_cols=20 Identities=55% Similarity=0.841 Sum_probs=15.7
Q ss_pred cccCCeecccCCcCCCCCCcc
Q 007307 447 LSNLVNLDLSDNQFTGSIPDS 467 (608)
Q Consensus 447 L~~L~~L~Ls~N~l~G~iP~~ 467 (608)
|++|+.|+|++|++. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 567889999999988 66654
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.92 E-value=0.95 Score=27.96 Aligned_cols=20 Identities=55% Similarity=0.841 Sum_probs=15.7
Q ss_pred cccCCeecccCCcCCCCCCcc
Q 007307 447 LSNLVNLDLSDNQFTGSIPDS 467 (608)
Q Consensus 447 L~~L~~L~Ls~N~l~G~iP~~ 467 (608)
|++|+.|+|++|++. .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 567889999999988 66654
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=78.77 E-value=3.9 Score=44.00 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=36.4
Q ss_pred EEEEEEcCCC-CCCCCCChhhcccccCCeecccCCcC--CCCCCccccCC------------------CCCcEEEccccc
Q 007307 425 VISQIDLGSQ-GLKGYISDKISLLSNLVNLDLSDNQF--TGSIPDSLTSS------------------SKLQLVLLNNNL 483 (608)
Q Consensus 425 ~l~~L~Ls~n-~l~g~ip~~~~~L~~L~~L~Ls~N~l--~G~iP~~l~~l------------------~~L~~L~Ls~N~ 483 (608)
.|+.|++++| .+. .+|. +|+.|+++.|.+ -+.+|..+..| ++|+.|+++++.
T Consensus 95 nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 95 GLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS 167 (426)
T ss_pred hhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCC
Confidence 4566666665 333 4443 244444544443 23455544333 256666666665
Q ss_pred ccccCchhhhhccCCCCeEeecCC
Q 007307 484 LEGRVPEELYSIGVHGGAFDLSGN 507 (608)
Q Consensus 484 l~G~iP~~l~~~~~~l~~l~l~~N 507 (608)
.. .+|.. ++.+++.|.++.|
T Consensus 168 ~i-~LP~~---LP~SLk~L~ls~n 187 (426)
T PRK15386 168 NI-ILPEK---LPESLQSITLHIE 187 (426)
T ss_pred cc-cCccc---ccccCcEEEeccc
Confidence 44 23332 2236677776654
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.84 E-value=0.65 Score=47.02 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCCCC--CChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc
Q 007307 426 ISQIDLGSQGLKGY--ISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 486 (608)
Q Consensus 426 l~~L~Ls~n~l~g~--ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 486 (608)
++.|||.+|.++-. |-.-+.+|+.|+.|+|+.|+|+..|-..-..+.+|++|-|.+-.|+-
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence 45566666666621 22224456667777777777764443222455666666666665554
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.50 E-value=0.89 Score=27.53 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=11.0
Q ss_pred CCCCcEEEcccccccccCch
Q 007307 471 SSKLQLVLLNNNLLEGRVPE 490 (608)
Q Consensus 471 l~~L~~L~Ls~N~l~G~iP~ 490 (608)
+++|+.|+|++|+++..-..
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHH
Confidence 35677777777777654433
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=72.28 E-value=5.8 Score=41.23 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=18.4
Q ss_pred eeeEeecCCceEEEEecccchh--hHhhhhhcccccCCCCC
Q 007307 335 HYVAKNLSSTELTVKLVPVVGA--ALISGLENYALVPNDLS 373 (608)
Q Consensus 335 ~~~~~~l~~n~L~~~l~~~~~~--piLnalEi~~~~~~~~~ 373 (608)
.++.+++++|-|--..++.... .....+|-+.+.+...|
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 4567778887654333333221 11223444555544433
No 73
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.79 E-value=2.7 Score=26.28 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.6
Q ss_pred cceEEEecccccccCCCCCCC
Q 007307 585 KSLMLLEMESQHAKGLPTLPL 605 (608)
Q Consensus 585 ~~~~~~~~~~n~~~~~~~~~~ 605 (608)
.++..+++++|+|+.+|+...
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~~ 22 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELXX 22 (26)
T ss_pred cccceeecCCCccccCccccc
Confidence 357889999999999998543
No 74
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=69.34 E-value=3.9 Score=34.55 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=10.9
Q ss_pred cccCceEEehhhHHHHHHHH
Q 007307 528 LSKGGKIAIVILSLVLFSGV 547 (608)
Q Consensus 528 ~~~~~~i~i~~~~~~~~~~~ 547 (608)
.+...+.+|++++++++.++
T Consensus 63 ls~gaiagi~vg~~~~v~~l 82 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGL 82 (96)
T ss_pred cccccEEEEEeehhhHHHHH
Confidence 34456667666655444333
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=69.20 E-value=0.35 Score=47.20 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=68.7
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+++.||++.|++. .+-..|+.++.|..||++.|++. -.|..++++..+..+++.+|+++ ..|.+....+ .++.++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~-~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP-HPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC-Ccchhh
Confidence 36788999999988 67778999999999999999988 78999999999999999999998 6787776654 566667
Q ss_pred ecCCCC
Q 007307 504 LSGNKG 509 (608)
Q Consensus 504 l~~N~~ 509 (608)
+-+|++
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 767765
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=67.46 E-value=7.5 Score=41.83 Aligned_cols=60 Identities=17% Similarity=0.320 Sum_probs=33.9
Q ss_pred eEEEEEEcCC-CCCCCCCChhhcccccCCeecccCC-cCCCCCCccccCCCCCcEEEcccccc--cccCchhhh
Q 007307 424 VVISQIDLGS-QGLKGYISDKISLLSNLVNLDLSDN-QFTGSIPDSLTSSSKLQLVLLNNNLL--EGRVPEELY 493 (608)
Q Consensus 424 ~~l~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N-~l~G~iP~~l~~l~~L~~L~Ls~N~l--~G~iP~~l~ 493 (608)
..|+.|.+++ +.|+ .+|..+ ..+|+.|++++| .+. .+|.. |+.|+++.|.+ -+.+|..+.
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLPES------VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccccc------cceEEeCCCCCcccccCcchHh
Confidence 3467777765 4443 555444 246777778777 443 55543 55566665553 234555544
No 77
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=63.33 E-value=3.7 Score=47.46 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCC-CCCccccCCCCCcEEEcccccccccC--chhhhh---ccC
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTG-SIPDSLTSSSKLQLVLLNNNLLEGRV--PEELYS---IGV 497 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~Ls~N~l~G~i--P~~l~~---~~~ 497 (608)
++|..||+|+-+++ .+ ..+++|++|+.|.+.+=.+.- ..-..+-+|++|++||+|..+....- .....+ ..+
T Consensus 173 pNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp 250 (699)
T KOG3665|consen 173 PNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP 250 (699)
T ss_pred CccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence 46788888888877 33 567888888887777666552 22235667888888888876654321 111111 123
Q ss_pred CCCeEeecCCC
Q 007307 498 HGGAFDLSGNK 508 (608)
Q Consensus 498 ~l~~l~l~~N~ 508 (608)
.|+.||.+++.
T Consensus 251 eLrfLDcSgTd 261 (699)
T KOG3665|consen 251 ELRFLDCSGTD 261 (699)
T ss_pred cccEEecCCcc
Confidence 56677777654
No 78
>PF15102 TMEM154: TMEM154 protein family
Probab=62.88 E-value=6.3 Score=35.66 Aligned_cols=7 Identities=29% Similarity=0.358 Sum_probs=2.9
Q ss_pred eEEehhh
Q 007307 533 KIAIVIL 539 (608)
Q Consensus 533 ~i~i~~~ 539 (608)
++.++|.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 3444444
No 79
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=57.33 E-value=7.9 Score=26.47 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=4.9
Q ss_pred HHHHhhhhcCC
Q 007307 550 VVYICCIRRGR 560 (608)
Q Consensus 550 ~~~~~~~~r~~ 560 (608)
..+.+|+||.+
T Consensus 24 ~~YaCcykk~~ 34 (38)
T PF02439_consen 24 FYYACCYKKHR 34 (38)
T ss_pred HHHHHHHcccc
Confidence 33445555443
No 80
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.56 E-value=2.2 Score=42.97 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=53.2
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCC--ccccCCCCCcEEEcccccccccCchh
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIP--DSLTSSSKLQLVLLNNNLLEGRVPEE 491 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~Ls~N~l~G~iP~~ 491 (608)
+..|+.|.||-|+++..-| +..+++|+.|+|..|.+. .+- .-+.+|++|+.|.|..|--.|.-+..
T Consensus 40 Mp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQN 107 (388)
T ss_pred cccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchh
Confidence 3458899999999994333 788999999999999887 332 24678999999999999998887654
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=52.74 E-value=15 Score=37.03 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCCCCCCCChhh----cccccCCeecccCCcCCC----CCCcc---------ccCCCCCcEEEccccccc
Q 007307 424 VVISQIDLGSQGLKGYISDKI----SLLSNLVNLDLSDNQFTG----SIPDS---------LTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~----~~L~~L~~L~Ls~N~l~G----~iP~~---------l~~l~~L~~L~Ls~N~l~ 485 (608)
++++..+||.|.+.-..|+.+ +.-+.|++|.|++|.|-. .|-.+ ..+-+.|++.....|+|.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 468889999999988888764 456789999999998851 22211 234577888888888874
No 82
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=51.21 E-value=8.2 Score=44.69 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=41.5
Q ss_pred eEEEEEEcCCCCCCCC-CChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc-cCchhhhhccCCCCe
Q 007307 424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG-RVPEELYSIGVHGGA 501 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~-ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~~~~~l~~ 501 (608)
+.|++|.+++-.+... .-.-..++++|..||+|+-+++ .+ ..++.|++|+.|-+.+=.+.- ..-..+..+. .|++
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~-~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLK-KLRV 224 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhccc-CCCe
Confidence 3456666665554321 1222345666666666666665 22 445666666666555433331 1112334443 5666
Q ss_pred EeecCCC
Q 007307 502 FDLSGNK 508 (608)
Q Consensus 502 l~l~~N~ 508 (608)
||+|..+
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 6666544
No 83
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=51.19 E-value=9.8 Score=39.44 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=20.2
Q ss_pred CCeEeecCCCCCCCCCCCCCCCCccCCCCcccCceEEehhhHHHHHHHHHHH
Q 007307 499 GGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLV 550 (608)
Q Consensus 499 l~~l~l~~N~~~c~~p~~~~C~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 550 (608)
++.+++.++.|-. . ..|.... ...++.|+|++++++++++++
T Consensus 248 vQaF~~~~~~Fg~--a--~~C~~D~------~~~~vPIaVG~~La~lvlivL 289 (306)
T PF01299_consen 248 VQAFRVKNNTFGT--A--EECSSDD------TSDLVPIAVGAALAGLVLIVL 289 (306)
T ss_pred EEEEEecCCCCCC--h--hcCCcCC------ccchHHHHHHHHHHHHHHHHH
Confidence 4566677666422 1 2576321 123455556555544444443
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.93 E-value=10 Score=23.68 Aligned_cols=14 Identities=50% Similarity=0.726 Sum_probs=7.0
Q ss_pred ccCCeecccCCcCC
Q 007307 448 SNLVNLDLSDNQFT 461 (608)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (608)
++|+.|+|++|.+.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 85
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=46.63 E-value=11 Score=39.24 Aligned_cols=61 Identities=20% Similarity=0.223 Sum_probs=44.1
Q ss_pred EEEEEEcCCCCCCCCCChh----hcccccCCeecccCCcCCC---CC----------CccccCCCCCcEEEccccccc
Q 007307 425 VISQIDLGSQGLKGYISDK----ISLLSNLVNLDLSDNQFTG---SI----------PDSLTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~----~~~L~~L~~L~Ls~N~l~G---~i----------P~~l~~l~~L~~L~Ls~N~l~ 485 (608)
+|+.||||.|.|.-.-+.. +.++..|++|.|.||.+.- .. -...+.-+.|+++...+|++.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 5889999999998555554 4567889999999998851 11 112344567888888888875
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.29 E-value=14 Score=23.24 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=10.2
Q ss_pred CCCcEEEccccccc
Q 007307 472 SKLQLVLLNNNLLE 485 (608)
Q Consensus 472 ~~L~~L~Ls~N~l~ 485 (608)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777788877775
No 87
>PF15050 SCIMP: SCIMP protein
Probab=44.39 E-value=9.4 Score=33.04 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhcCC
Q 007307 544 FSGVLLVVYICCIRRGR 560 (608)
Q Consensus 544 ~~~~~~~~~~~~~~r~~ 560 (608)
.+++.+++++.|++..|
T Consensus 20 S~~lglIlyCvcR~~lR 36 (133)
T PF15050_consen 20 SVVLGLILYCVCRWQLR 36 (133)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344445555554333
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=44.20 E-value=2.6 Score=42.91 Aligned_cols=60 Identities=27% Similarity=0.265 Sum_probs=40.9
Q ss_pred cCCeecccCCcCCCC-CCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCC
Q 007307 449 NLVNLDLSDNQFTGS-IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKG 509 (608)
Q Consensus 449 ~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~ 509 (608)
.|++||||+-.++-. +-.-+++|.+|+.|.|.+++|...|-..+++-. .+..+++++..+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG 246 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSG 246 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccc-cceeeccccccc
Confidence 477788887777632 333456777888888888888877777776543 667777776443
No 89
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=43.65 E-value=7.7 Score=39.60 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=0.0
Q ss_pred HHHHHHhhhhcCCCCC
Q 007307 548 LLVVYICCIRRGRNDY 563 (608)
Q Consensus 548 ~~~~~~~~~~r~~~~~ 563 (608)
+++++++|+||||+.+
T Consensus 162 A~iIa~icyrrkR~GK 177 (290)
T PF05454_consen 162 AGIIACICYRRKRKGK 177 (290)
T ss_dssp ----------------
T ss_pred HHHHHHHhhhhhhccc
Confidence 3444445555554433
No 90
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.61 E-value=2 Score=43.31 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=53.3
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCch--hhhhccCCCCeEe
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE--ELYSIGVHGGAFD 503 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~--~l~~~~~~l~~l~ 503 (608)
+..|++-+.+|+ -|. -...++.|+.|.||-|.++.-- .+..|++|+.|+|..|.+.. +-+ .+.+++ +|+.|=
T Consensus 21 vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlp-sLr~LW 94 (388)
T KOG2123|consen 21 VKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLP-SLRTLW 94 (388)
T ss_pred hhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCc-hhhhHh
Confidence 445566565555 121 2456899999999999998433 47899999999999998863 221 123333 677777
Q ss_pred ecCCC
Q 007307 504 LSGNK 508 (608)
Q Consensus 504 l~~N~ 508 (608)
|..|+
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 88888
No 91
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.82 E-value=24 Score=31.51 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCC
Q 007307 538 ILSLVLFSGVLLVVYICCIRRGR 560 (608)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~r~~ 560 (608)
++++++++++++++++..+||++
T Consensus 7 iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444445555566666655
No 92
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=40.98 E-value=21 Score=34.46 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=4.1
Q ss_pred EEehhhHHHHH
Q 007307 534 IAIVILSLVLF 544 (608)
Q Consensus 534 i~i~~~~~~~~ 544 (608)
++++.+++.++
T Consensus 41 iaiVAG~~tVI 51 (221)
T PF08374_consen 41 IAIVAGIMTVI 51 (221)
T ss_pred eeeecchhhhH
Confidence 33333333333
No 93
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=39.57 E-value=12 Score=29.98 Aligned_cols=10 Identities=40% Similarity=0.953 Sum_probs=3.5
Q ss_pred HHHhhhhcCC
Q 007307 551 VYICCIRRGR 560 (608)
Q Consensus 551 ~~~~~~~r~~ 560 (608)
++++++||++
T Consensus 19 ~~~~~~rr~~ 28 (75)
T PF14575_consen 19 IVIVCFRRCK 28 (75)
T ss_dssp HHHCCCTT--
T ss_pred eEEEEEeeEc
Confidence 3444444443
No 94
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=38.08 E-value=22 Score=35.82 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=6.7
Q ss_pred HHHHHHHHhhhhcCCC
Q 007307 546 GVLLVVYICCIRRGRN 561 (608)
Q Consensus 546 ~~~~~~~~~~~~r~~~ 561 (608)
++++++++|.+|||+.
T Consensus 273 vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 273 VVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3333444444444443
No 95
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=35.73 E-value=49 Score=27.14 Aligned_cols=13 Identities=31% Similarity=1.101 Sum_probs=6.3
Q ss_pred HHHHHhhhhcCCC
Q 007307 549 LVVYICCIRRGRN 561 (608)
Q Consensus 549 ~~~~~~~~~r~~~ 561 (608)
++.++||++|+|.
T Consensus 49 ilwfvCC~kRkrs 61 (94)
T PF05393_consen 49 ILWFVCCKKRKRS 61 (94)
T ss_pred HHHHHHHHHhhhc
Confidence 3344455555544
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.47 E-value=27 Score=45.97 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=26.7
Q ss_pred cccCCcCCCCCCccccCCCCCcEEEcccccccc
Q 007307 454 DLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 486 (608)
Q Consensus 454 ~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 486 (608)
||++|+|+-.-+..|..|++|+.|+|++|.|.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999994444678889999999999998864
No 97
>PTZ00370 STEVOR; Provisional
Probab=34.13 E-value=26 Score=35.48 Aligned_cols=15 Identities=47% Similarity=0.857 Sum_probs=6.2
Q ss_pred HHHHHHHhhhhcCCC
Q 007307 547 VLLVVYICCIRRGRN 561 (608)
Q Consensus 547 ~~~~~~~~~~~r~~~ 561 (608)
+++++++|.+|||+.
T Consensus 270 vliilYiwlyrrRK~ 284 (296)
T PTZ00370 270 VLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHhhcc
Confidence 333344444444443
No 98
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=33.54 E-value=65 Score=31.10 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=6.8
Q ss_pred ceEEehhhHHHHHHH
Q 007307 532 GKIAIVILSLVLFSG 546 (608)
Q Consensus 532 ~~i~i~~~~~~~~~~ 546 (608)
.+|++++.+.+++++
T Consensus 101 ~lI~lv~~g~~lLla 115 (202)
T PF06365_consen 101 TLIALVTSGSFLLLA 115 (202)
T ss_pred EEEehHHhhHHHHHH
Confidence 455555544333333
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.28 E-value=25 Score=38.90 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=32.7
Q ss_pred eEEEEEEcCCCCCCCCCC---hhhcccccCCeecccCC--cCCCCCCccccCC--CCCcEEEccccccccc
Q 007307 424 VVISQIDLGSQGLKGYIS---DKISLLSNLVNLDLSDN--QFTGSIPDSLTSS--SKLQLVLLNNNLLEGR 487 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip---~~~~~L~~L~~L~Ls~N--~l~G~iP~~l~~l--~~L~~L~Ls~N~l~G~ 487 (608)
..+..++|++|+|. .+. .--..-+.|..|+||+| .+. --.++.++ ..|+.|-|.+|.+.-.
T Consensus 218 p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 34677888888876 221 11122456777777777 332 11122222 3366677777766543
No 100
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=28.47 E-value=49 Score=35.65 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=16.5
Q ss_pred CCcccCceEEehhhHHHHHH-HHHHHHHHhh
Q 007307 526 GGLSKGGKIAIVILSLVLFS-GVLLVVYICC 555 (608)
Q Consensus 526 ~~~~~~~~i~i~~~~~~~~~-~~~~~~~~~~ 555 (608)
+.++.++|.+|.|.+++++. ++.++.|||.
T Consensus 362 s~LstgaIaGIsvavvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 362 SGLSTGAIAGISVAVVVVVGGLVGFLCWWFI 392 (397)
T ss_pred ccccccceeeeeehhHHHHHHHHHHHhhhee
Confidence 44556777777776665544 3334444433
No 101
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=28.14 E-value=85 Score=27.00 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=26.8
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccc
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 481 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~ 481 (608)
|+.+.+.. .+...-...|..+++|+.+.+..+ +...--..+.++++|+.+.+.+
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 55666653 455333445677777777777765 5422234566776777777754
No 102
>PRK06764 hypothetical protein; Provisional
Probab=27.60 E-value=53 Score=26.69 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.3
Q ss_pred CccEEeecCCCceeEEEEE
Q 007307 89 KNCYIIPNLPPGRYYIRTF 107 (608)
Q Consensus 89 ~~cY~~~~~~~~~yliRl~ 107 (608)
-+.|++.-.+||+|.||..
T Consensus 73 lnkyti~f~kpg~yvirvn 91 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeeEEEecCCccEEEEEc
Confidence 4689999999999999973
No 103
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=26.87 E-value=45 Score=31.81 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=9.5
Q ss_pred eEEehhhHHHHHHHHHHHHHHh
Q 007307 533 KIAIVILSLVLFSGVLLVVYIC 554 (608)
Q Consensus 533 ~i~i~~~~~~~~~~~~~~~~~~ 554 (608)
.++|++.+++++++++++++++
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhhe
Confidence 3445554444444443333333
No 104
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=6.5 Score=40.09 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCCCCC-CChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccc
Q 007307 425 VISQIDLGSQGLKGY-ISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 481 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~-ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~ 481 (608)
+++.||||...++-. +-.-+..+..|+.|.|.+++|...|-..+++-..|+.|||+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 356667766655421 122245566666666777666666655565556666666553
No 105
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.99 E-value=35 Score=30.66 Aligned_cols=11 Identities=18% Similarity=0.890 Sum_probs=4.0
Q ss_pred HHHHHHHHHHh
Q 007307 544 FSGVLLVVYIC 554 (608)
Q Consensus 544 ~~~~~~~~~~~ 554 (608)
++++.+++++|
T Consensus 42 iiiiivli~lc 52 (189)
T PF05568_consen 42 IIIIIVLIYLC 52 (189)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 106
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=24.93 E-value=46 Score=29.34 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=0.0
Q ss_pred hhhhcCCCC
Q 007307 554 CCIRRGRND 562 (608)
Q Consensus 554 ~~~~r~~~~ 562 (608)
+++|.++++
T Consensus 100 v~rrcrrr~ 108 (129)
T PF12191_consen 100 VWRRCRRRE 108 (129)
T ss_dssp ---------
T ss_pred HHhhhhccc
Confidence 333333333
No 107
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=24.14 E-value=36 Score=30.90 Aligned_cols=42 Identities=26% Similarity=0.172 Sum_probs=19.4
Q ss_pred EehhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhhhh
Q 007307 535 AIVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDLMSLSA 576 (608)
Q Consensus 535 ~i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 576 (608)
.+++++.+++++++..+-+.|+++++....|-.|.-+++=+-
T Consensus 11 ~i~igi~Ll~lLl~cgiGcvwhwkhr~~~~ftLPkflqRRss 52 (158)
T PF11770_consen 11 AISIGISLLLLLLLCGIGCVWHWKHRDSTRFTLPKFLQRRSS 52 (158)
T ss_pred HHHHHHHHHHHHHHHhcceEEEeeccCccccchHHHHHhhhh
Confidence 344444444433333343444444444445566666555443
No 108
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=23.68 E-value=46 Score=27.66 Aligned_cols=18 Identities=11% Similarity=0.574 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhhcCC
Q 007307 543 LFSGVLLVVYICCIRRGR 560 (608)
Q Consensus 543 ~~~~~~~~~~~~~~~r~~ 560 (608)
+++++++.++++|+.|++
T Consensus 52 iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 52 ILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHHHHHHHHHhhhhhh
Confidence 333333444445544443
No 109
>PHA03265 envelope glycoprotein D; Provisional
Probab=23.46 E-value=41 Score=34.87 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=6.6
Q ss_pred EEEccCCCCCC
Q 007307 32 YRIDCGSATST 42 (608)
Q Consensus 32 ~~IdCG~~~~~ 42 (608)
+-+.||.-.++
T Consensus 23 ~~~~~~~~~~~ 33 (402)
T PHA03265 23 VVLSCGTCEKA 33 (402)
T ss_pred HHHhcccHHHH
Confidence 34778865443
No 110
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=22.66 E-value=1e+02 Score=24.58 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=16.4
Q ss_pred ceEEehhhHHHHHHHHHHHHHHhhhhcC
Q 007307 532 GKIAIVILSLVLFSGVLLVVYICCIRRG 559 (608)
Q Consensus 532 ~~i~i~~~~~~~~~~~~~~~~~~~~~r~ 559 (608)
..+++++.+.+++++++++..++.+||+
T Consensus 30 ~avaVviPl~L~LCiLvl~yai~~fkrk 57 (74)
T PF11857_consen 30 NAVAVVIPLVLLLCILVLIYAIFQFKRK 57 (74)
T ss_pred eEEEEeHHHHHHHHHHHHHHHhheeeec
Confidence 3566666666666666655555544443
No 111
>PF14299 PP2: Phloem protein 2
Probab=20.99 E-value=4.9e+02 Score=23.79 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=50.3
Q ss_pred CCceeeecCCCCCCCccEEeecCCCceeEEEEEeecC-CCCCCCC-CCcEEEEECCEEE-Ee---------cCCCCCccc
Q 007307 75 HEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYD-NYDGKSH-SPSFDVSVEGTLV-FS---------WRSPWPEGL 142 (608)
Q Consensus 75 ~y~t~R~f~~~~~~~~cY~~~~~~~~~yliRl~F~y~-nyd~~~~-~~~Fdv~~~~~~~-l~---------~~~~~~~~~ 142 (608)
.+..+.+|-- .|+-+|-.| .++++|-+=+-|... +.-|... +-.|.|.+++..- .. ..|.|.+
T Consensus 38 eL~~V~WLeI-~G~i~~~~L--sp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~E-- 112 (154)
T PF14299_consen 38 ELLQVCWLEI-RGKINTRML--SPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWME-- 112 (154)
T ss_pred EEEEEEEEEE-EEEEEceEc--CCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEE--
Confidence 3456666643 232223333 357888665555322 1223333 4558888864321 00 0011211
Q ss_pred CCCceEEEEEEEe-eCCeEEEEEeecCCCC----ceeeeeeeEe
Q 007307 143 ARDGAYSDLFAFV-KDGELDLCFYSFATDP----PVIASLEVQQ 181 (608)
Q Consensus 143 ~~~~~~~e~~~~~-~~~~l~v~f~~~~~~~----pfIs~iEl~~ 181 (608)
.-+-||.... .++.+.+++.....+. =.|-||||||
T Consensus 113 ---ie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 113 ---IELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred ---EEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEEec
Confidence 1122665432 4567888887665332 3899999997
No 112
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=20.35 E-value=1.3e+03 Score=26.20 Aligned_cols=117 Identities=16% Similarity=0.238 Sum_probs=61.3
Q ss_pred eccceeeCCCCCCCCChHHHHHHHHcc-----CCceEEEEEecCCCcEEEEEEeeeccccccCC-----cceEEEEEECC
Q 007307 245 TTRERITNTNQPPNYYPMKLYQTAIVS-----SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKA-----GQRVFDILVND 314 (608)
Q Consensus 245 ~t~~~i~~~~~~~~~~P~~V~~Ta~~~-----~~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~-----~~r~F~V~in~ 314 (608)
+.+.++++++..|-..-+++|++...- -+.+.+.|-...+.+|--.+..-|+..-.+.. -..+-.|++||
T Consensus 33 ~~n~t~~~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia~d~wtysr~frl~dl~~~~~~~l~ie~vdtia~v~~n~ 112 (867)
T KOG2230|consen 33 SSNKTVNGTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIAEDDWTYSRKFRLIDLDDTVGAFLEIESVDTIATVYVNG 112 (867)
T ss_pred cCCCceecCCCCCchHhHHHHhcccccCccccccccceeEEeccCccceeeeEEEEccccccceEEEeecceeEEEEEcc
Confidence 344556666665555556777777654 23366666555555554333333433321110 13456889999
Q ss_pred eeeceeeeecccCCccceeeeeeEeecCCceEEEEecccchhhHhhhhhccc
Q 007307 315 KNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366 (608)
Q Consensus 315 ~~l~~~di~~~~g~~~~~~~~~~~~~l~~n~L~~~l~~~~~~piLnalEi~~ 366 (608)
+.+-.-+ ..+.++..+++......|.+...+..+..-+-..+-|..+
T Consensus 113 ~~v~~s~-----n~f~~y~~~vt~ii~~~n~i~~~f~ssv~yA~~~~~~~~k 159 (867)
T KOG2230|consen 113 QKVLHSR-----NQFLPYHVNVTDIIAGENDITIKFKSSVKYAEKRADEYKK 159 (867)
T ss_pred EEEeecc-----ccceeEEEeEEEEecCCcceEEEeehhHHHHHHHHHhhhc
Confidence 8542111 1244555556666566677877776664433344444444
Done!