Query 007307
Match_columns 608
No_of_seqs 491 out of 3613
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 22:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 1.1E-23 3.7E-28 198.6 11.9 148 30-183 6-172 (174)
2 2jwp_A Malectin, MGC80075; sug 99.8 3.9E-21 1.3E-25 181.0 6.3 153 199-367 5-171 (174)
3 1ogq_A PGIP-2, polygalacturona 99.5 6.9E-14 2.4E-18 144.1 10.3 132 373-511 2-139 (313)
4 4ecn_A Leucine-rich repeat pro 99.4 1.1E-13 3.9E-18 160.7 9.6 131 374-514 266-508 (876)
5 4eco_A Uncharacterized protein 99.4 3.5E-13 1.2E-17 152.5 10.4 130 374-515 27-267 (636)
6 3rgz_A Protein brassinosteroid 99.4 3.6E-13 1.2E-17 155.7 6.1 87 424-511 632-718 (768)
7 3g39_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 115.9 8.7 110 402-512 3-117 (170)
8 4fcg_A Uncharacterized protein 99.2 2.9E-12 9.9E-17 132.9 3.0 139 372-515 22-168 (328)
9 1w8a_A SLIT protein; signaling 99.2 1.7E-11 5.7E-16 116.9 7.3 111 402-513 2-118 (192)
10 3rgz_A Protein brassinosteroid 99.2 1.7E-11 5.6E-16 141.7 8.6 124 374-509 9-163 (768)
11 2v9t_B SLIT homolog 2 protein 99.2 5.3E-11 1.8E-15 116.0 10.9 111 401-513 4-120 (220)
12 3e6j_A Variable lymphocyte rec 99.2 1.5E-10 5E-15 113.5 12.1 102 408-510 19-125 (229)
13 2r9u_A Variable lymphocyte rec 99.2 9.8E-11 3.4E-15 109.8 9.9 111 401-512 5-120 (174)
14 2o6s_A Variable lymphocyte rec 99.1 2.4E-10 8.1E-15 110.0 12.5 104 407-511 6-114 (208)
15 1ogq_A PGIP-2, polygalacturona 99.1 6.8E-12 2.3E-16 129.1 -1.2 92 424-519 221-312 (313)
16 2v70_A SLIT-2, SLIT homolog 2 99.1 3E-10 1E-14 110.6 10.4 113 401-514 4-122 (220)
17 4fcg_A Uncharacterized protein 99.1 1.9E-11 6.4E-16 126.7 1.5 89 424-514 206-294 (328)
18 2ifg_A High affinity nerve gro 99.1 1.4E-10 4.8E-15 120.7 8.0 103 408-512 8-118 (347)
19 2wfh_A SLIT homolog 2 protein 99.1 3.9E-10 1.4E-14 107.5 9.7 109 401-511 3-116 (193)
20 2o6r_A Variable lymphocyte rec 99.0 7.8E-10 2.7E-14 103.5 8.9 103 408-511 7-114 (177)
21 3e6j_A Variable lymphocyte rec 99.0 3.2E-10 1.1E-14 111.1 6.0 86 425-512 89-174 (229)
22 2v70_A SLIT-2, SLIT homolog 2 99.0 4.6E-10 1.6E-14 109.3 6.8 86 425-511 82-167 (220)
23 3m19_A Variable lymphocyte rec 99.0 2.5E-09 8.5E-14 106.1 11.8 87 424-511 35-121 (251)
24 3m19_A Variable lymphocyte rec 99.0 3.8E-10 1.3E-14 112.0 5.5 88 424-512 107-194 (251)
25 4ecn_A Leucine-rich repeat pro 99.0 6.5E-10 2.2E-14 129.2 8.3 93 422-515 446-565 (876)
26 2wfh_A SLIT homolog 2 protein 98.9 8.2E-10 2.8E-14 105.3 6.6 86 425-511 55-140 (193)
27 2xot_A Amphoterin-induced prot 98.9 1.5E-09 5.2E-14 113.7 8.8 114 398-512 8-127 (361)
28 4eco_A Uncharacterized protein 98.9 1.4E-09 4.9E-14 122.8 9.1 93 422-515 204-322 (636)
29 4g8a_A TOLL-like receptor 4; l 98.9 1.3E-09 4.6E-14 121.9 7.0 89 423-511 493-581 (635)
30 2v9t_B SLIT homolog 2 protein 98.9 2.5E-09 8.5E-14 104.0 7.1 87 424-511 80-166 (220)
31 1p9a_G Platelet glycoprotein I 98.9 2E-09 7E-14 109.3 6.7 86 424-511 124-209 (290)
32 2o6q_A Variable lymphocyte rec 98.9 1E-08 3.4E-13 102.8 11.4 87 425-512 38-124 (270)
33 1ozn_A Reticulon 4 receptor; N 98.8 2.5E-09 8.7E-14 107.9 6.7 87 424-511 153-239 (285)
34 3v47_A TOLL-like receptor 5B a 98.8 4E-09 1.4E-13 113.6 8.6 111 400-511 2-117 (455)
35 3zyi_A Leucine-rich repeat-con 98.8 5.4E-09 1.8E-13 112.9 8.9 101 410-511 56-161 (452)
36 1xku_A Decorin; proteoglycan, 98.8 1.2E-08 4.1E-13 105.2 11.1 107 401-511 24-135 (330)
37 2o6r_A Variable lymphocyte rec 98.8 6.1E-09 2.1E-13 97.3 8.0 87 425-512 53-139 (177)
38 4g8a_A TOLL-like receptor 4; l 98.8 3.5E-09 1.2E-13 118.5 7.4 87 424-511 52-138 (635)
39 1w8a_A SLIT protein; signaling 98.8 5.1E-09 1.7E-13 99.5 6.9 89 423-512 53-141 (192)
40 1ozn_A Reticulon 4 receptor; N 98.8 1.1E-08 3.9E-13 103.1 9.6 88 424-512 32-120 (285)
41 2z62_A TOLL-like receptor 4, v 98.8 7.1E-09 2.4E-13 104.1 8.0 88 424-512 28-115 (276)
42 3v47_A TOLL-like receptor 5B a 98.8 4.4E-09 1.5E-13 113.3 6.2 89 425-514 324-412 (455)
43 3zyi_A Leucine-rich repeat-con 98.8 2E-09 6.7E-14 116.4 3.4 88 424-512 218-305 (452)
44 1dce_A Protein (RAB geranylger 98.8 1.4E-08 4.8E-13 112.9 10.3 76 427-508 444-519 (567)
45 2o6s_A Variable lymphocyte rec 98.8 1.1E-08 3.9E-13 98.0 8.3 88 425-513 77-164 (208)
46 3rfs_A Internalin B, repeat mo 98.8 2.1E-08 7.3E-13 100.6 10.6 85 425-510 86-170 (272)
47 3vq2_A TLR4, TOLL-like recepto 98.8 1.5E-09 5.3E-14 121.4 2.3 89 423-512 472-560 (606)
48 3rfs_A Internalin B, repeat mo 98.8 1.2E-08 4.1E-13 102.4 8.2 89 424-513 133-221 (272)
49 3oja_A Leucine-rich immune mol 98.7 4.4E-09 1.5E-13 114.9 5.1 84 425-511 121-205 (487)
50 2z80_A TOLL-like receptor 2, v 98.7 1.8E-08 6.1E-13 105.0 9.4 102 408-511 30-138 (353)
51 2id5_A Lingo-1, leucine rich r 98.7 9E-09 3.1E-13 111.7 7.3 103 409-512 12-119 (477)
52 3zyj_A Leucine-rich repeat-con 98.7 1.4E-08 4.8E-13 109.2 8.7 111 400-511 33-150 (440)
53 2z7x_B TOLL-like receptor 1, v 98.7 3.3E-09 1.1E-13 116.4 3.6 88 424-511 324-413 (520)
54 3t6q_A CD180 antigen; protein- 98.7 2.7E-09 9.3E-14 119.4 2.6 86 424-511 476-561 (606)
55 1p9a_G Platelet glycoprotein I 98.7 5.3E-09 1.8E-13 106.2 4.5 86 424-511 100-186 (290)
56 2ft3_A Biglycan; proteoglycan, 98.7 2.3E-08 7.7E-13 103.3 9.0 101 407-511 32-137 (332)
57 2je0_A Acidic leucine-rich nuc 98.7 2E-08 6.9E-13 90.9 7.1 82 425-509 18-100 (149)
58 4b8c_D Glucose-repressible alc 98.7 2.4E-09 8.3E-14 122.7 0.7 89 424-514 270-358 (727)
59 3vq2_A TLR4, TOLL-like recepto 98.7 1.9E-08 6.6E-13 112.4 7.8 88 424-512 32-119 (606)
60 2z81_A CD282 antigen, TOLL-lik 98.7 1.7E-08 5.7E-13 111.5 6.8 102 408-511 4-112 (549)
61 1dce_A Protein (RAB geranylger 98.7 2E-08 6.9E-13 111.6 7.2 86 423-512 462-548 (567)
62 2z66_A Variable lymphocyte rec 98.7 1.4E-08 4.7E-13 103.5 5.3 88 424-511 175-262 (306)
63 1wwl_A Monocyte differentiatio 98.7 2.2E-08 7.5E-13 102.6 6.6 85 424-510 121-214 (312)
64 2ell_A Acidic leucine-rich nuc 98.7 2.8E-08 9.6E-13 91.8 6.8 84 425-511 25-109 (168)
65 3j0a_A TOLL-like receptor 5; m 98.6 1.2E-08 4.2E-13 118.9 3.7 84 423-512 479-562 (844)
66 2o6q_A Variable lymphocyte rec 98.6 5.2E-08 1.8E-12 97.5 7.5 88 424-512 133-220 (270)
67 2z80_A TOLL-like receptor 2, v 98.6 1.4E-08 4.8E-13 105.8 3.4 158 335-511 77-236 (353)
68 2je0_A Acidic leucine-rich nuc 98.6 2.3E-08 7.9E-13 90.5 4.2 84 424-510 42-126 (149)
69 3g39_A Variable lymphocyte rec 98.6 1.3E-07 4.3E-12 88.0 9.0 84 426-513 11-94 (170)
70 2z66_A Variable lymphocyte rec 98.6 1.2E-08 4E-13 104.0 2.1 90 424-514 150-240 (306)
71 3zyj_A Leucine-rich repeat-con 98.6 3.1E-08 1.1E-12 106.5 5.4 88 424-512 207-294 (440)
72 2r9u_A Variable lymphocyte rec 98.6 1.4E-07 4.8E-12 88.1 9.0 81 427-511 15-95 (174)
73 4b8c_D Glucose-repressible alc 98.6 2.8E-08 9.6E-13 113.8 4.9 81 426-510 249-329 (727)
74 2xwt_C Thyrotropin receptor; s 98.6 8E-08 2.7E-12 94.2 7.3 90 424-515 31-122 (239)
75 1ziw_A TOLL-like receptor 3; i 98.5 8.7E-08 3E-12 108.7 8.0 103 408-511 4-111 (680)
76 4glp_A Monocyte differentiatio 98.5 9.7E-08 3.3E-12 97.6 7.5 84 426-510 93-182 (310)
77 2ifg_A High affinity nerve gro 98.5 1.2E-07 4.1E-12 98.3 8.1 81 428-511 12-94 (347)
78 1jl5_A Outer protein YOPM; leu 98.5 3E-08 1E-12 107.3 3.1 74 426-510 113-186 (454)
79 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 6.7E-08 2.3E-12 107.2 5.7 89 424-512 353-443 (562)
80 2z7x_B TOLL-like receptor 1, v 98.5 4.4E-08 1.5E-12 107.4 4.1 153 335-511 325-482 (520)
81 3j0a_A TOLL-like receptor 5; m 98.5 8.4E-08 2.9E-12 111.9 6.6 89 424-513 24-113 (844)
82 2z81_A CD282 antigen, TOLL-lik 98.5 8.3E-08 2.8E-12 105.8 6.2 89 424-513 50-139 (549)
83 2xot_A Amphoterin-induced prot 98.5 8.4E-08 2.9E-12 100.4 5.7 85 424-510 88-176 (361)
84 2ell_A Acidic leucine-rich nuc 98.5 1.2E-07 4.2E-12 87.5 5.9 86 424-510 71-160 (168)
85 2z63_A TOLL-like receptor 4, v 98.5 6.1E-08 2.1E-12 107.3 4.3 88 424-512 445-533 (570)
86 2xwt_C Thyrotropin receptor; s 98.5 1E-07 3.5E-12 93.5 4.9 80 425-507 56-140 (239)
87 4ezg_A Putative uncharacterize 98.5 7.3E-08 2.5E-12 91.7 3.8 58 426-483 90-147 (197)
88 3t6q_A CD180 antigen; protein- 98.4 1.4E-07 4.9E-12 105.3 6.4 87 424-511 33-119 (606)
89 1a9n_A U2A', U2A'; complex (nu 98.4 9.3E-08 3.2E-12 89.2 3.6 79 426-508 44-124 (176)
90 2z62_A TOLL-like receptor 4, v 98.4 2.9E-07 1E-11 92.1 7.5 83 426-509 78-161 (276)
91 1wwl_A Monocyte differentiatio 98.4 6.3E-08 2.1E-12 99.1 2.5 85 425-511 96-187 (312)
92 2id5_A Lingo-1, leucine rich r 98.4 1.2E-07 4.1E-12 102.8 4.3 87 425-512 249-335 (477)
93 4ezg_A Putative uncharacterize 98.4 2.1E-07 7.3E-12 88.4 5.4 86 424-512 66-151 (197)
94 3cvr_A Invasion plasmid antige 98.4 1.8E-07 6.1E-12 103.8 5.0 85 409-511 49-134 (571)
95 2ft3_A Biglycan; proteoglycan, 98.4 2.8E-07 9.5E-12 95.0 5.7 86 425-512 194-279 (332)
96 1xku_A Decorin; proteoglycan, 98.3 3.6E-07 1.2E-11 94.1 6.2 85 425-511 193-277 (330)
97 1ziw_A TOLL-like receptor 3; i 98.3 5.9E-07 2E-11 101.8 8.0 88 423-512 535-624 (680)
98 3oja_B Anopheles plasmodium-re 98.3 7.6E-07 2.6E-11 99.6 7.7 62 425-486 124-185 (597)
99 1a9n_A U2A', U2A'; complex (nu 98.3 9.4E-07 3.2E-11 82.3 6.9 81 425-510 20-101 (176)
100 1xeu_A Internalin C; cellular 98.3 1.4E-06 4.9E-11 86.8 8.4 80 424-511 41-120 (263)
101 1h6t_A Internalin B; cell adhe 98.3 1.7E-06 5.8E-11 87.6 8.8 81 424-511 68-148 (291)
102 1h6u_A Internalin H; cell adhe 98.3 1.8E-06 6.2E-11 88.1 9.1 79 425-510 86-164 (308)
103 3oja_B Anopheles plasmodium-re 98.3 9.3E-07 3.2E-11 98.9 7.4 88 423-511 98-185 (597)
104 1m9s_A Internalin B; cell inva 98.3 1.9E-07 6.4E-12 104.6 1.7 80 425-511 132-211 (605)
105 1jl5_A Outer protein YOPM; leu 98.3 1.5E-07 5.3E-12 101.7 0.9 82 424-511 11-105 (454)
106 3cvr_A Invasion plasmid antige 98.3 2.3E-07 8E-12 102.9 2.4 66 425-495 181-253 (571)
107 1m9s_A Internalin B; cell inva 98.2 1.8E-06 6.1E-11 96.6 9.4 76 426-508 111-186 (605)
108 3o6n_A APL1; leucine-rich repe 98.2 1.2E-06 4.2E-11 92.2 7.5 61 425-486 118-179 (390)
109 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 9.2E-07 3.1E-11 98.0 6.4 84 424-511 76-160 (562)
110 3bz5_A Internalin-J, INLJ; leu 98.2 7.6E-07 2.6E-11 96.3 5.5 55 426-486 193-247 (457)
111 2z63_A TOLL-like receptor 4, v 98.2 6.2E-07 2.1E-11 99.1 4.8 90 424-514 421-511 (570)
112 4glp_A Monocyte differentiatio 98.2 7.5E-07 2.6E-11 90.9 5.0 80 425-510 225-307 (310)
113 3o6n_A APL1; leucine-rich repe 98.2 1.7E-06 5.7E-11 91.2 7.4 87 423-511 92-179 (390)
114 4ay9_X Follicle-stimulating ho 98.2 8.6E-07 3E-11 92.2 4.8 104 407-511 8-118 (350)
115 3bz5_A Internalin-J, INLJ; leu 98.2 4.1E-06 1.4E-10 90.5 10.2 76 425-510 65-140 (457)
116 3oja_A Leucine-rich immune mol 98.2 2.1E-06 7.2E-11 93.6 7.1 83 424-510 144-227 (487)
117 3o53_A Protein LRIM1, AGAP0063 98.1 1E-06 3.5E-11 90.2 3.3 82 425-510 145-227 (317)
118 1o6v_A Internalin A; bacterial 98.1 4.8E-06 1.6E-10 90.0 7.7 78 426-510 267-344 (466)
119 4fmz_A Internalin; leucine ric 98.1 2.1E-06 7.1E-11 88.7 4.5 81 426-511 245-325 (347)
120 1ds9_A Outer arm dynein; leuci 98.0 2.3E-07 7.8E-12 88.3 -2.9 80 425-510 49-128 (198)
121 1h6t_A Internalin B; cell adhe 98.0 5.6E-06 1.9E-10 83.7 7.1 81 424-511 134-214 (291)
122 1xeu_A Internalin C; cellular 98.0 2.5E-06 8.7E-11 85.0 4.4 81 425-512 107-187 (263)
123 1ds9_A Outer arm dynein; leuci 98.0 2.3E-07 7.9E-12 88.2 -3.7 83 425-511 71-154 (198)
124 4fmz_A Internalin; leucine ric 97.9 8.6E-06 3E-10 84.0 6.8 81 424-509 265-345 (347)
125 1h6u_A Internalin H; cell adhe 97.9 8.6E-06 2.9E-10 83.0 6.6 77 426-509 153-229 (308)
126 3o53_A Protein LRIM1, AGAP0063 97.9 1E-05 3.5E-10 82.8 6.7 84 424-512 169-252 (317)
127 3rw6_A Nuclear RNA export fact 97.9 7.9E-06 2.7E-10 81.5 5.5 77 425-503 171-257 (267)
128 4ay9_X Follicle-stimulating ho 97.9 3.3E-06 1.1E-10 87.8 2.4 86 425-511 55-142 (350)
129 2ast_B S-phase kinase-associat 97.9 2.3E-06 7.8E-11 87.9 0.3 83 424-507 93-178 (336)
130 2ca6_A RAN GTPase-activating p 97.8 1.8E-06 6.1E-11 90.9 -0.6 88 424-511 216-317 (386)
131 1o6v_A Internalin A; bacterial 97.8 9.5E-06 3.3E-10 87.6 4.8 81 424-511 309-389 (466)
132 3g06_A SSPH2 (leucine-rich rep 97.8 2.2E-05 7.7E-10 87.9 7.6 66 425-495 242-307 (622)
133 3g06_A SSPH2 (leucine-rich rep 97.8 4.2E-05 1.4E-09 85.7 9.6 16 586-601 222-237 (622)
134 3goz_A Leucine-rich repeat-con 97.7 7.7E-06 2.6E-10 85.3 2.2 86 425-510 52-151 (362)
135 2ca6_A RAN GTPase-activating p 97.7 9.3E-06 3.2E-10 85.3 1.5 86 425-511 188-288 (386)
136 2ast_B S-phase kinase-associat 97.7 8.7E-06 3E-10 83.5 1.1 83 424-508 70-153 (336)
137 3goz_A Leucine-rich repeat-con 97.6 2.4E-05 8.3E-10 81.5 4.0 87 425-511 23-123 (362)
138 3rw6_A Nuclear RNA export fact 97.5 1.4E-05 4.7E-10 79.7 0.5 63 445-509 167-232 (267)
139 1z7x_W Ribonuclease inhibitor; 97.4 2E-05 7E-10 84.5 -0.5 84 425-509 314-410 (461)
140 1z7x_W Ribonuclease inhibitor; 97.1 9.9E-05 3.4E-09 79.0 0.7 84 425-509 29-125 (461)
141 3un9_A NLR family member X1; l 96.9 0.00011 3.6E-09 77.2 -0.6 85 425-510 156-252 (372)
142 3un9_A NLR family member X1; l 96.6 0.00048 1.6E-08 72.1 1.2 85 425-510 127-224 (372)
143 3ogk_B Coronatine-insensitive 96.3 0.00054 1.8E-08 75.8 -0.3 86 425-511 437-527 (592)
144 3rfe_A Platelet glycoprotein I 96.3 0.0053 1.8E-07 53.9 6.2 56 428-485 12-68 (130)
145 1io0_A Tropomodulin; LRR prote 96.2 0.001 3.4E-08 62.3 0.8 83 426-508 67-162 (185)
146 3rfe_A Platelet glycoprotein I 96.0 0.0087 3E-07 52.5 5.7 57 451-511 11-69 (130)
147 1io0_A Tropomodulin; LRR prote 96.0 0.0013 4.4E-08 61.5 0.2 84 425-509 37-135 (185)
148 2p1m_B Transport inhibitor res 95.8 0.00096 3.3E-08 73.7 -1.5 82 426-508 434-517 (594)
149 3ogk_B Coronatine-insensitive 95.8 0.0015 5E-08 72.2 -0.3 78 426-505 166-251 (592)
150 3sb4_A Hypothetical leucine ri 95.3 0.013 4.5E-07 59.6 4.9 84 425-511 227-311 (329)
151 2p1m_B Transport inhibitor res 94.6 0.0044 1.5E-07 68.3 -1.1 81 425-507 131-221 (594)
152 3e4g_A ATP synthase subunit S, 94.2 0.015 5.3E-07 53.7 1.8 84 424-508 61-150 (176)
153 2ra8_A Uncharacterized protein 92.9 0.0075 2.6E-07 62.7 -3.1 83 424-508 252-341 (362)
154 3sb4_A Hypothetical leucine ri 92.3 0.077 2.6E-06 53.8 3.7 76 425-503 251-327 (329)
155 2ra8_A Uncharacterized protein 89.3 0.058 2E-06 55.9 -0.6 62 446-508 250-318 (362)
156 2w47_A Lipolytic enzyme, G-D-S 88.5 8.5 0.00029 33.6 13.3 93 87-183 39-132 (144)
157 2vzp_A Aocbm35, EXO-beta-D-glu 85.3 14 0.00049 31.3 12.6 89 87-179 38-127 (127)
158 2ks1_B Epidermal growth factor 83.0 1 3.5E-05 31.0 3.2 12 547-558 27-38 (44)
159 3e4g_A ATP synthase subunit S, 82.7 0.51 1.8E-05 43.3 2.1 61 448-508 61-125 (176)
160 1pgv_A TMD-1, tropomodulin TMD 82.5 0.42 1.5E-05 44.8 1.5 82 426-507 43-136 (197)
161 2w3j_A Carbohydrate binding mo 82.4 21 0.0007 31.2 12.6 92 87-183 38-130 (145)
162 4fdw_A Leucine rich hypothetic 79.6 1.3 4.5E-05 46.2 4.3 80 425-509 272-357 (401)
163 1pgv_A TMD-1, tropomodulin TMD 79.1 0.69 2.4E-05 43.3 1.7 58 425-482 71-136 (197)
164 2l2t_A Receptor tyrosine-prote 78.4 1.5 5.1E-05 30.2 2.7 9 550-558 29-37 (44)
165 4fdw_A Leucine rich hypothetic 76.1 2.5 8.4E-05 44.1 5.1 76 425-505 181-256 (401)
166 2wz8_A Cellulosome protein doc 75.5 15 0.00053 32.5 9.6 92 90-183 49-150 (156)
167 2w87_A Esterase D, XYL-CBM35; 71.4 30 0.001 29.9 10.3 91 87-181 38-130 (139)
168 2jwa_A Receptor tyrosine-prote 69.0 2.6 8.9E-05 28.9 2.1 14 547-560 27-40 (44)
169 2k1k_A Ephrin type-A receptor 68.4 1.5 5.1E-05 29.2 0.8 23 532-554 12-34 (38)
170 2o14_A Hypothetical protein YX 59.2 67 0.0023 32.7 11.8 79 90-184 78-157 (375)
171 2w3j_A Carbohydrate binding mo 56.5 33 0.0011 29.9 7.7 46 273-323 39-84 (145)
172 4gt6_A Cell surface protein; l 49.5 22 0.00077 36.2 6.3 78 426-508 290-368 (394)
173 4fs7_A Uncharacterized protein 48.9 14 0.00049 37.7 4.7 75 426-506 299-375 (394)
174 2w47_A Lipolytic enzyme, G-D-S 46.7 71 0.0024 27.5 8.2 46 273-323 40-86 (144)
175 2w87_A Esterase D, XYL-CBM35; 44.4 48 0.0016 28.5 6.6 47 273-324 39-87 (139)
176 2vzp_A Aocbm35, EXO-beta-D-glu 42.1 1.5E+02 0.0051 24.6 9.6 45 273-322 39-84 (127)
177 4h09_A Hypothetical leucine ri 39.0 24 0.00081 35.7 4.4 41 442-482 280-320 (379)
178 2wz8_A Cellulosome protein doc 33.7 1.8E+02 0.006 25.5 8.7 51 273-323 47-103 (156)
179 4fs7_A Uncharacterized protein 32.4 24 0.00082 36.0 3.2 56 425-482 321-376 (394)
180 2klu_A T-cell surface glycopro 30.3 72 0.0025 23.7 4.4 39 536-574 12-50 (70)
181 4h09_A Hypothetical leucine ri 28.3 58 0.002 32.7 5.2 78 426-507 242-320 (379)
182 4gt6_A Cell surface protein; l 27.7 42 0.0014 34.1 4.0 58 425-485 312-370 (394)
183 4d8m_A Pesticidal crystal prot 24.1 1.7E+02 0.0059 31.5 7.9 87 91-181 489-584 (587)
184 2cdp_A Beta-agarase 1; carbohy 23.2 3.7E+02 0.013 23.3 10.3 39 86-129 65-103 (160)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.90 E-value=1.1e-23 Score=198.63 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=113.2
Q ss_pred ccEEEccCCCCCCcCCCCceEeeCCCCeecCCcccc------cCCCCCCCCCCceeeecCCCCCCCccEEeecCCCceeE
Q 007307 30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY 103 (608)
Q Consensus 30 ~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~~~~~~~~~~y~t~R~f~~~~~~~~cY~~~~~~~~~yl 103 (608)
..|+||||++. .+|..||+|.+|+.+...|..... ......++.+|+|+|+|+. ..+|.||+.++|+|+
T Consensus 6 ~~~~INcGg~~-~~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~ 80 (174)
T 2jwp_A 6 VIWAVNAGGES-HVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV 80 (174)
T ss_dssp EEEEEEETSSS-EEETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred EEEEEECCCCC-ccCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence 46999999875 457789999998765433322111 1111224568999999985 379999998889999
Q ss_pred EEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEe-------------eCCeEEEEEeecCCC
Q 007307 104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD 170 (608)
Q Consensus 104 iRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~-------------~~~~l~v~f~~~~~~ 170 (608)
|||||..-.|... ..+.|||+++|++++++||++.+++...++++|+.+.+ .++.|.|+|.|....
T Consensus 81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~ 159 (174)
T 2jwp_A 81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD 159 (174)
T ss_dssp EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence 9999976656553 47999999999999999998766555567888887653 567899999987667
Q ss_pred CceeeeeeeEecC
Q 007307 171 PPVIASLEVQQID 183 (608)
Q Consensus 171 ~pfIs~iEl~~l~ 183 (608)
.||||||||++-+
T Consensus 160 ~a~inaIEI~~~~ 172 (174)
T 2jwp_A 160 NPKVCALFIMKGT 172 (174)
T ss_dssp SSSEEEEEEESSC
T ss_pred CcEEEEEEEEeCc
Confidence 8999999999753
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.82 E-value=3.9e-21 Score=181.05 Aligned_cols=153 Identities=22% Similarity=0.251 Sum_probs=111.7
Q ss_pred EEeeeeccCCCCCCCCCcCCCCCCCCCcCCCCCCCCCCCCCCceeeeccceeeCCCCCCCCChHHHHHHHHccCCceEEE
Q 007307 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN 278 (608)
Q Consensus 199 ~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~i~t~~~i~~~~~~~~~~P~~V~~Ta~~~~~~lt~~ 278 (608)
+++||+||||.. + .|..+|.|.+|..|........ ......+. ....+|..||||||.+..+++|.
T Consensus 5 ~~~~~INcGg~~----~---~d~~gr~w~~D~~~~~~g~~~~---~~~~~~~~----~~~~~~~~lY~TaR~~~~~~tY~ 70 (174)
T 2jwp_A 5 KVIWAVNAGGES----H---VDVHGIHYRKDPLEGRVGRASD---YGMKLPIL----RSNPEDQVLYQTERYNEDSFGYD 70 (174)
T ss_dssp HEEEEEEETSSS----E---EETTTEEECSSCSSTTCCCCCC---CCTTSCCS----SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred cEEEEEECCCCC----c---cCCCCCEEcCCcCcccCCcccc---cccceEec----ccCCCCchhhhhhccCCCCeEEE
Confidence 578999999753 2 2568999999987652111100 01111111 12336899999999987789999
Q ss_pred EEecCCCcEEEEEEeeeccccccCCcceEEEEEECCe-eeceeeeecccCCccceeeeeeEee------------cCCce
Q 007307 279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE 345 (608)
Q Consensus 279 ~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di~~~~g~~~~~~~~~~~~~------------l~~n~ 345 (608)
++++++++|+|||||||+.. ...++|+|||+|||+ .++++||..++|+..++.+.+.+.. ..+++
T Consensus 71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~ 148 (174)
T 2jwp_A 71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK 148 (174)
T ss_dssp EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence 99998889999999999975 356899999999998 6788999888776666665554321 25678
Q ss_pred EEEEeccc-chhhHhhhhhcccc
Q 007307 346 LTVKLVPV-VGAALISGLENYAL 367 (608)
Q Consensus 346 L~~~l~~~-~~~piLnalEi~~~ 367 (608)
|+++|.|. ...|+||||||++-
T Consensus 149 L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 149 LSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEEEECSSSCSSSEEEEEEESS
T ss_pred EEEEEeccCCCCcEEEEEEEEeC
Confidence 99999875 33499999999874
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.48 E-value=6.9e-14 Score=144.08 Aligned_cols=132 Identities=23% Similarity=0.395 Sum_probs=106.6
Q ss_pred CCchHHHHHHHHHHHhcCCCC-CCCCCC--CCCCCCCCccCcceeecCCCCCceeEEEEEEcCCCCCCC--CCChhhccc
Q 007307 373 STVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLL 447 (608)
Q Consensus 373 ~~~~~~~~~L~~lk~~~~~~~-~~~w~~--~pc~p~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g--~ip~~~~~L 447 (608)
.+.+.|..||+++|..+..+. ..+|.. +||. +.|.||.|..... ..+++.|+|++|+++| .+|..++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~~--~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCCC--CceEEEEECCCCCccCCcccChhHhCC
Confidence 367889999999999886553 247964 4552 3499999975321 1368899999999999 899999999
Q ss_pred ccCCeecccC-CcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 448 SNLVNLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 448 ~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
++|++|+|++ |.+.|.+|..++++++|++|+|++|+++|.+|..+..+. .++.+++++|.+..
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~ 139 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSG 139 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEES
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC-CCCEEeCCCCccCC
Confidence 9999999994 999999999999999999999999999988888887765 77888888877654
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=1.1e-13 Score=160.69 Aligned_cols=131 Identities=21% Similarity=0.291 Sum_probs=109.3
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCccC------------cceeecCCCCCceeEEEEEEcCCCCCC
Q 007307 374 TVPEQVIAMRALKESLRVPDRMGWNGDP----CAPTNWDAW------------EGITCHPNKDETAVVISQIDLGSQGLK 437 (608)
Q Consensus 374 ~~~~~~~~L~~lk~~~~~~~~~~w~~~p----c~p~~~~~w------------~gv~c~~~~~~~~~~l~~L~Ls~n~l~ 437 (608)
+...|..||.++|+.+..+ +|+.+. +.|. .|.| .||.|+.. .+++.|+|++|+|+
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~-~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIH-SLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAK 336 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCC-CCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCE
T ss_pred cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCC-ccccccccccccccCcCceEecCC-----CCEEEEECccCCCC
Confidence 4567999999999998655 785422 1111 1688 99999863 36899999999999
Q ss_pred CCCChhhcccccCCeecc-cCCcCCCC-----------------------------------------------------
Q 007307 438 GYISDKISLLSNLVNLDL-SDNQFTGS----------------------------------------------------- 463 (608)
Q Consensus 438 g~ip~~~~~L~~L~~L~L-s~N~l~G~----------------------------------------------------- 463 (608)
|.+|++|++|++|+.|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 88866555
Q ss_pred -----------------------CCccccCCCCCcEEEcccccccc-----------------cCchhhh--hccCCCCe
Q 007307 464 -----------------------IPDSLTSSSKLQLVLLNNNLLEG-----------------RVPEELY--SIGVHGGA 501 (608)
Q Consensus 464 -----------------------iP~~l~~l~~L~~L~Ls~N~l~G-----------------~iP~~l~--~~~~~l~~ 501 (608)
||..+++|++|+.|+|++|+|+| .+|..+. .+. .|+.
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCE
Confidence 88999999999999999999999 4999876 775 8999
Q ss_pred EeecCCCCCCCCC
Q 007307 502 FDLSGNKGLCGAP 514 (608)
Q Consensus 502 l~l~~N~~~c~~p 514 (608)
|++++|.+....|
T Consensus 496 L~Ls~N~l~~~iP 508 (876)
T 4ecn_A 496 VELYNCPNMTQLP 508 (876)
T ss_dssp EEEESCTTCCSCC
T ss_pred EECcCCCCCccCh
Confidence 9999999877665
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.41 E-value=3.5e-13 Score=152.45 Aligned_cols=130 Identities=19% Similarity=0.332 Sum_probs=108.3
Q ss_pred CchHHHHHHHHHHHhcCCCCC----------CCCCCC-CCCCCCCccC---cceeecCCCCCceeEEEEEEcCCCCCCCC
Q 007307 374 TVPEQVIAMRALKESLRVPDR----------MGWNGD-PCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGY 439 (608)
Q Consensus 374 ~~~~~~~~L~~lk~~~~~~~~----------~~w~~~-pc~p~~~~~w---~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ 439 (608)
....|..||.+++..+..+.. .+|+.+ +| |.| .||.|+.. .+++.|+|++|+++|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcCC-----CCEEEEEecCcccCCc
Confidence 445799999999987654321 256532 23 688 99999754 3689999999999999
Q ss_pred CChhhcccccCCeecccCCc------------------------------------------------------------
Q 007307 440 ISDKISLLSNLVNLDLSDNQ------------------------------------------------------------ 459 (608)
Q Consensus 440 ip~~~~~L~~L~~L~Ls~N~------------------------------------------------------------ 459 (608)
+|++|++|++|+.|+|++|.
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 99999999999999999984
Q ss_pred ------------------CCCCCCccccCCCCCcEEEccccccccc-----------------Cchhhh--hccCCCCeE
Q 007307 460 ------------------FTGSIPDSLTSSSKLQLVLLNNNLLEGR-----------------VPEELY--SIGVHGGAF 502 (608)
Q Consensus 460 ------------------l~G~iP~~l~~l~~L~~L~Ls~N~l~G~-----------------iP~~l~--~~~~~l~~l 502 (608)
++| ||.+++++++|++|+|++|+++|. +|+.+. .+. .++.|
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L 254 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDV 254 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEE
Confidence 445 899999999999999999999997 999988 775 89999
Q ss_pred eecCCCCCCCCCC
Q 007307 503 DLSGNKGLCGAPS 515 (608)
Q Consensus 503 ~l~~N~~~c~~p~ 515 (608)
++++|.+....|.
T Consensus 255 ~L~~n~l~~~~p~ 267 (636)
T 4eco_A 255 EVYNCPNLTKLPT 267 (636)
T ss_dssp EEECCTTCSSCCT
T ss_pred EecCCcCCccChH
Confidence 9999998876663
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.35 E-value=3.6e-13 Score=155.70 Aligned_cols=87 Identities=30% Similarity=0.461 Sum_probs=71.2
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..++.|+|++|+++|.+|.+|++|++|+.|+|++|+++|.||..+++|++|+.|||++|+++|.+|..+..+. .++.++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~ 710 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT-MLTEID 710 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC-CCSEEE
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC-CCCEEE
Confidence 4577888888888888888888888888888888888888888888888888888888888888888887765 666666
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.+
T Consensus 711 ls~N~l~g 718 (768)
T 3rgz_A 711 LSNNNLSG 718 (768)
T ss_dssp CCSSEEEE
T ss_pred CcCCcccc
Confidence 65555443
No 7
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=1.1e-11 Score=115.94 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=90.9
Q ss_pred CCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcE
Q 007307 402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQL 476 (608)
Q Consensus 402 c~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 476 (608)
|...+.|.|+.+.|...... ....++.|+|++|++++..|..|..+++|+.|+|++|+|++..|..|.++++|+.
T Consensus 3 CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp CC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 33333478999999764321 1246789999999999988999999999999999999999777777899999999
Q ss_pred EEcccccccccCchhhhhccCCCCeEeecCCCCCCC
Q 007307 477 VLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 512 (608)
Q Consensus 477 L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~ 512 (608)
|+|++|+|++..|..+..+. +++.+++++|++.|.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLK-SLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCT-TCCEEECCSSCBCTT
T ss_pred EECCCCccCEeCHHHhcCCC-CCCEEEeCCCCCCCC
Confidence 99999999976666676665 899999999999984
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.21 E-value=2.9e-12 Score=132.87 Aligned_cols=139 Identities=17% Similarity=0.253 Sum_probs=107.6
Q ss_pred CCCchHHHHHHHHHHHhcC-CCCC--CCCCC-CCCCCCCCccCcceeecCCC----CCceeEEEEEEcCCCCCCCCCChh
Q 007307 372 LSTVPEQVIAMRALKESLR-VPDR--MGWNG-DPCAPTNWDAWEGITCHPNK----DETAVVISQIDLGSQGLKGYISDK 443 (608)
Q Consensus 372 ~~~~~~~~~~L~~lk~~~~-~~~~--~~w~~-~pc~p~~~~~w~gv~c~~~~----~~~~~~l~~L~Ls~n~l~g~ip~~ 443 (608)
.+...++..+|.++|..+. .+.. ..|.. ..+.+. .|.|.|+.|.... .....+++.|+|++|+++ .+|+.
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~-~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQ-IETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTT-SCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhccccccccc-ccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 3456788999999998763 2221 24620 111111 2689999995210 001135789999999999 89999
Q ss_pred hcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCCCCCC
Q 007307 444 ISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPS 515 (608)
Q Consensus 444 ~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~~p~ 515 (608)
++.|++|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..+..+. .++.|++++|+.....|.
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-RLRELSIRACPELTELPE 168 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT-TCCEEEEEEETTCCCCCS
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCc-CCCEEECCCCCCccccCh
Confidence 999999999999999999 99999999999999999999999 8999988876 899999999887776653
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=1.7e-11 Score=116.90 Aligned_cols=111 Identities=21% Similarity=0.284 Sum_probs=79.5
Q ss_pred CCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCCh-hhcccccCCeecccCCcCCCCCCccccCCCCCc
Q 007307 402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISD-KISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQ 475 (608)
Q Consensus 402 c~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 475 (608)
|...+.|.|..+.|...... ....++.|+|++|++++..+. .++.+++|+.|+|++|++++..|..|.++++|+
T Consensus 2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred cCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 43334478888888754321 112567788888888865554 378888888888888888887788888888888
Q ss_pred EEEcccccccccCchhhhhccCCCCeEeecCCCCCCCC
Q 007307 476 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGA 513 (608)
Q Consensus 476 ~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~~ 513 (608)
.|+|++|++++..|..+..+. .++.|++++|++....
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLH-QLKTLNLYDNQISCVM 118 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCT-TCCEEECCSSCCCEEC
T ss_pred EEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCeeC
Confidence 888888888877776666654 7778888888766543
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.20 E-value=1.7e-11 Score=141.75 Aligned_cols=124 Identities=24% Similarity=0.329 Sum_probs=81.4
Q ss_pred CchHHHHHHHHHHHhcCCCC-CCCCC-CCCCCCCCCccCcceeecCCCCCceeEEEEEEcCCCCCCCC---CCh------
Q 007307 374 TVPEQVIAMRALKESLRVPD-RMGWN-GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY---ISD------ 442 (608)
Q Consensus 374 ~~~~~~~~L~~lk~~~~~~~-~~~w~-~~pc~p~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~---ip~------ 442 (608)
..+.|..||+++|..+.++. ..+|+ +..| |.|.||.|+. .+++.|+|+++.+.|. +|+
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~-----C~w~gv~C~~------~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNP-----CTFDGVTCRD------DKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG-----GGSTTEEEET------TEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCCCCCC-----cCCcceEECC------CcEEEEECCCCCcCCccCccChhHhccC
Confidence 46789999999999887654 34896 3445 7999999972 2678888888888876 554
Q ss_pred -----------------hhcccccCCeecccCCcCCCCCCc--cccCCCCCcEEEcccccccccCchhh-hhccCCCCeE
Q 007307 443 -----------------KISLLSNLVNLDLSDNQFTGSIPD--SLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHGGAF 502 (608)
Q Consensus 443 -----------------~~~~L~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L~Ls~N~l~G~iP~~l-~~~~~~l~~l 502 (608)
.++.+++|++|+|++|.++|.+|. .+++|++|++|+|++|+++|.+|..+ ..+ .+++.+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L 156 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVL 156 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC-TTCSEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC-CCCCEE
Confidence 455556666666666666666665 66666666666666666666555543 222 244455
Q ss_pred eecCCCC
Q 007307 503 DLSGNKG 509 (608)
Q Consensus 503 ~l~~N~~ 509 (608)
++++|.+
T Consensus 157 ~Ls~n~l 163 (768)
T 3rgz_A 157 DLSANSI 163 (768)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 5554443
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=5.3e-11 Score=115.96 Aligned_cols=111 Identities=21% Similarity=0.239 Sum_probs=91.0
Q ss_pred CCCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCc
Q 007307 401 PCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQ 475 (608)
Q Consensus 401 pc~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 475 (608)
+|...+.|.|..+.|...+.. ....++.|+|++|++++..+..|..+++|+.|+|++|++++..|..|.++++|+
T Consensus 4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 465555589999999864321 123688999999999977777899999999999999999988899999999999
Q ss_pred EEEcccccccccCchh-hhhccCCCCeEeecCCCCCCCC
Q 007307 476 LVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSGNKGLCGA 513 (608)
Q Consensus 476 ~L~Ls~N~l~G~iP~~-l~~~~~~l~~l~l~~N~~~c~~ 513 (608)
.|+|++|++++ +|.. +..+. .++.|++++|.+..-.
T Consensus 84 ~L~Ls~N~l~~-l~~~~f~~l~-~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 84 SLVLYGNKITE-LPKSLFEGLF-SLQLLLLNANKINCLR 120 (220)
T ss_dssp EEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCCCCCC
T ss_pred EEECCCCcCCc-cCHhHccCCC-CCCEEECCCCCCCEeC
Confidence 99999999995 5554 45554 8999999999876643
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.16 E-value=1.5e-10 Score=113.54 Aligned_cols=102 Identities=17% Similarity=0.109 Sum_probs=86.1
Q ss_pred ccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc
Q 007307 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 408 ~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 482 (608)
|.|+++.|...... ....++.|+|++|++++..|..|..+++|+.|+|++|++.+..+..+..+++|+.|+|++|
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 68999999864322 2346889999999999988999999999999999999998655567899999999999999
Q ss_pred cccccCchhhhhccCCCCeEeecCCCCC
Q 007307 483 LLEGRVPEELYSIGVHGGAFDLSGNKGL 510 (608)
Q Consensus 483 ~l~G~iP~~l~~~~~~l~~l~l~~N~~~ 510 (608)
++++..+..+..+. +++.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~-~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 99 QLTVLPSAVFDRLV-HLKELFMCCNKLT 125 (229)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCC
T ss_pred cCCccChhHhCcch-hhCeEeccCCccc
Confidence 99976555566654 8999999999866
No 13
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=9.8e-11 Score=109.80 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=88.3
Q ss_pred CCCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCc
Q 007307 401 PCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQ 475 (608)
Q Consensus 401 pc~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 475 (608)
.|...+.|...-+.|...... ....++.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|.++++|+
T Consensus 5 ~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp SSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 454444466666777654321 124678999999999998899999999999999999999976566679999999
Q ss_pred EEEcccccccccCchhhhhccCCCCeEeecCCCCCCC
Q 007307 476 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 512 (608)
Q Consensus 476 ~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~ 512 (608)
.|+|++|+|++..+..+..+. +++.+++++|++.|.
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLK-SLTHIYLYNNPWDCE 120 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCBCTT
T ss_pred EEECCCCccceeCHHHhcccc-CCCEEEeCCCCcccc
Confidence 999999999965554566664 899999999999883
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.14 E-value=2.4e-10 Score=109.95 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=85.8
Q ss_pred CccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccc
Q 007307 407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 481 (608)
Q Consensus 407 ~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~ 481 (608)
.|.|.++.|...+.. ...+++.|+|++|++++..+..+..+++|+.|+|++|++++..+..+.++++|++|+|++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 379999999864321 233688999999999976666789999999999999999976666789999999999999
Q ss_pred ccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 482 NLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 482 N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
|++++..+..+..+. .++.+++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLT-QLKELALNTNQLQS 114 (208)
T ss_dssp SCCCCCCTTTTTTCT-TCCEEECCSSCCCC
T ss_pred CcCCccCHhHhcCcc-CCCEEEcCCCcCcc
Confidence 999965555556654 89999999998764
No 15
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.09 E-value=6.8e-12 Score=129.10 Aligned_cols=92 Identities=28% Similarity=0.425 Sum_probs=78.6
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|.+++.+|. +..+++|+.|+|++|+++|.+|..+.++++|+.|+|++|+++|.+|.. ..+. .++.++
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~-~L~~l~ 297 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ-RFDVSA 297 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGG-GSCGGG
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cccc-ccChHH
Confidence 4578899999999977765 888999999999999999999999999999999999999999999986 4443 778899
Q ss_pred ecCCCCCCCCCCCCCC
Q 007307 504 LSGNKGLCGAPSLPSC 519 (608)
Q Consensus 504 l~~N~~~c~~p~~~~C 519 (608)
+++|+.+|+.|.. .|
T Consensus 298 l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 298 YANNKCLCGSPLP-AC 312 (313)
T ss_dssp TCSSSEEESTTSS-CC
T ss_pred hcCCCCccCCCCC-CC
Confidence 9999999987643 56
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.08 E-value=3e-10 Score=110.64 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=91.7
Q ss_pred CCCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCCh-hhcccccCCeecccCCcCCCCCCccccCCCCC
Q 007307 401 PCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISD-KISLLSNLVNLDLSDNQFTGSIPDSLTSSSKL 474 (608)
Q Consensus 401 pc~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L 474 (608)
+|...+.|.|..+.|...... ....++.|+|++|++++..|. .|..+++|+.|+|++|++++..|..|.++++|
T Consensus 4 ~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 454445589999999764321 122467899999999977654 48999999999999999998888899999999
Q ss_pred cEEEcccccccccCchhhhhccCCCCeEeecCCCCCCCCC
Q 007307 475 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 514 (608)
Q Consensus 475 ~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~~p 514 (608)
+.|+|++|++++..|..+..+. .++.|++++|.+..-.|
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLE-SLKTLMLRSNRITCVGN 122 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCS-SCCEEECTTSCCCCBCT
T ss_pred CEEECCCCccCccCHhHhcCCc-CCCEEECCCCcCCeECH
Confidence 9999999999987777777765 89999999999776433
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.08 E-value=1.9e-11 Score=126.74 Aligned_cols=89 Identities=18% Similarity=0.245 Sum_probs=76.9
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++ +|+.++.+++|+.|+|++|++.+.+|..++++++|+.|+|++|++.+.+|..+..+. .++.++
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~ 283 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLD 283 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-TCCEEE
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-CCCEEe
Confidence 457889999999984 777899999999999999999999999999999999999999999999998887775 788999
Q ss_pred ecCCCCCCCCC
Q 007307 504 LSGNKGLCGAP 514 (608)
Q Consensus 504 l~~N~~~c~~p 514 (608)
+++|+++...|
T Consensus 284 L~~n~~~~~iP 294 (328)
T 4fcg_A 284 LRGCVNLSRLP 294 (328)
T ss_dssp CTTCTTCCCCC
T ss_pred CCCCCchhhcc
Confidence 99988877665
No 18
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=1.4e-10 Score=120.68 Aligned_cols=103 Identities=20% Similarity=0.212 Sum_probs=86.3
Q ss_pred ccCcceeecCC-CC------CceeEEEEEEcCC-CCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEc
Q 007307 408 DAWEGITCHPN-KD------ETAVVISQIDLGS-QGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLL 479 (608)
Q Consensus 408 ~~w~gv~c~~~-~~------~~~~~l~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~L 479 (608)
|.|..+.|... .. ....+|+.|+|++ |.|++..+..|+.|++|+.|+|++|+|+|..|..|.+|++|+.|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 78999999865 21 1234589999996 9999888889999999999999999999999999999999999999
Q ss_pred ccccccccCchhhhhccCCCCeEeecCCCCCCC
Q 007307 480 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 512 (608)
Q Consensus 480 s~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~ 512 (608)
++|+|++ +|..+.... .|+.|++.+|++.|.
T Consensus 88 ~~N~l~~-~~~~~~~~~-~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALES-LSWKTVQGL-SLQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSC-CCSTTTCSC-CCCEEECCSSCCCCC
T ss_pred CCCccce-eCHHHcccC-CceEEEeeCCCccCC
Confidence 9999996 454443333 489999999999983
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=3.9e-10 Score=107.48 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=89.3
Q ss_pred CCCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCc
Q 007307 401 PCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQ 475 (608)
Q Consensus 401 pc~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 475 (608)
+|...+.|.|..+.|...... ....++.|+|++|+++ .+|..|..+++|+.|+|++|.+++..|..|.++++|+
T Consensus 3 ~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 3 RCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp -CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 465444578888889754321 2236889999999998 8889999999999999999999988888899999999
Q ss_pred EEEcccccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 476 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 476 ~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
.|+|++|++++..|..+..+. .++.|++++|.+..
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLK-SLRLLSLHGNDISV 116 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCCCB
T ss_pred EEECCCCccCEeCHHHhCCCC-CCCEEECCCCCCCe
Confidence 999999999987777777765 88999999998765
No 20
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.00 E-value=7.8e-10 Score=103.50 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=85.3
Q ss_pred ccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc
Q 007307 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 408 ~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 482 (608)
|.|.++.|...+.. ....++.|+|++|++++..+..++.+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 78999999864321 2246889999999999776777899999999999999999776677899999999999999
Q ss_pred cccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 483 LLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 483 ~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
++++..+..+..+. .++.+++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~-~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 87 KLQSLPNGVFDKLT-QLKELALDTNQLKS 114 (177)
T ss_dssp CCCCCCTTTTTTCT-TCCEEECCSSCCSC
T ss_pred CccccCHHHhhCCc-ccCEEECcCCcceE
Confidence 99976666566654 88999999998763
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.98 E-value=3.2e-10 Score=111.06 Aligned_cols=86 Identities=22% Similarity=0.248 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|++++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++..+..+..+. .++.+++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l 166 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYL 166 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEe
Confidence 4788999999999777777899999999999999999 8999999999999999999999965555566654 8899999
Q ss_pred cCCCCCCC
Q 007307 505 SGNKGLCG 512 (608)
Q Consensus 505 ~~N~~~c~ 512 (608)
++|++.|.
T Consensus 167 ~~N~~~c~ 174 (229)
T 3e6j_A 167 FGNPWDCE 174 (229)
T ss_dssp TTSCBCTT
T ss_pred eCCCccCC
Confidence 99999883
No 22
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.98 E-value=4.6e-10 Score=109.26 Aligned_cols=86 Identities=23% Similarity=0.234 Sum_probs=80.4
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+. .++.+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L 160 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNL 160 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEe
Confidence 478999999999988888899999999999999999999999999999999999999999998898888775 8999999
Q ss_pred cCCCCCC
Q 007307 505 SGNKGLC 511 (608)
Q Consensus 505 ~~N~~~c 511 (608)
++|++.|
T Consensus 161 ~~N~l~c 167 (220)
T 2v70_A 161 LANPFNC 167 (220)
T ss_dssp CSCCEEC
T ss_pred cCcCCcC
Confidence 9999988
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.97 E-value=2.5e-09 Score=106.06 Aligned_cols=87 Identities=22% Similarity=0.179 Sum_probs=76.3
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..++.|+|++|++++..+..|..+++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..|..+..+. .++.|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-QLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC-CCCEEE
Confidence 3578899999999988888899999999999999999988888899999999999999999976666666664 899999
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|.+..
T Consensus 114 L~~N~l~~ 121 (251)
T 3m19_A 114 LGGNQLKS 121 (251)
T ss_dssp CCSSCCCC
T ss_pred cCCCcCCC
Confidence 99998764
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.96 E-value=3.8e-10 Score=111.99 Aligned_cols=88 Identities=24% Similarity=0.302 Sum_probs=76.3
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..++.+++|+.|+|++|++++..|..+..+. .++.++
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 185 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG-KLQTIT 185 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEE
T ss_pred CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC-CCCEEE
Confidence 3578999999999976666689999999999999999977777899999999999999999977776776664 889999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|++.|.
T Consensus 186 l~~N~~~c~ 194 (251)
T 3m19_A 186 LFGNQFDCS 194 (251)
T ss_dssp CCSCCBCTT
T ss_pred eeCCceeCC
Confidence 999999884
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=6.5e-10 Score=129.19 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=82.8
Q ss_pred ceeEEEEEEcCCCCCCC-----------------CCChhhc--ccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc
Q 007307 422 TAVVISQIDLGSQGLKG-----------------YISDKIS--LLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g-----------------~ip~~~~--~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 482 (608)
...+|+.|+|++|+|+| .+|..++ +|++|+.|+|++|++.|.+|..+++|++|+.|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 34578999999999998 4999988 9999999999999999999999999999999999999
Q ss_pred c-ccc-cCchhhhhcc------CCCCeEeecCCCCCCCCCC
Q 007307 483 L-LEG-RVPEELYSIG------VHGGAFDLSGNKGLCGAPS 515 (608)
Q Consensus 483 ~-l~G-~iP~~l~~~~------~~l~~l~l~~N~~~c~~p~ 515 (608)
+ ++| .+|..+..+. +.++.|++++|.+. ..|.
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~ 565 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPA 565 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCC
Confidence 8 999 9999887653 37899999999987 5553
No 26
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=8.2e-10 Score=105.26 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=77.1
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|.+++..+..|..|++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+. .++.+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L 133 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-ALSHLAI 133 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEEC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-cccEEEe
Confidence 478899999999988888899999999999999999988888999999999999999999965554566554 8899999
Q ss_pred cCCCCCC
Q 007307 505 SGNKGLC 511 (608)
Q Consensus 505 ~~N~~~c 511 (608)
++|++.|
T Consensus 134 ~~N~~~C 140 (193)
T 2wfh_A 134 GANPLYC 140 (193)
T ss_dssp CSSCEEC
T ss_pred CCCCeec
Confidence 9999988
No 27
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.92 E-value=1.5e-09 Score=113.73 Aligned_cols=114 Identities=17% Similarity=0.116 Sum_probs=92.4
Q ss_pred CCCCCCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhc-ccccCCeecccCCcCCCCCCccccCC
Q 007307 398 NGDPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKIS-LLSNLVNLDLSDNQFTGSIPDSLTSS 471 (608)
Q Consensus 398 ~~~pc~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~l 471 (608)
....|...+.|.+..+.|...... ....++.|+|++|++++..+..+. .+++|+.|+|++|++++..|..|.++
T Consensus 8 ~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 8 SVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp CCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred cCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 345676666688888999764321 123477899999999987777787 99999999999999998888889999
Q ss_pred CCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCCC
Q 007307 472 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG 512 (608)
Q Consensus 472 ~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~ 512 (608)
++|+.|+|++|+|++..+..+..+. .|+.|++++|++..-
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQ-ALEVLLLYNNHIVVV 127 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEE
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCc-CCCEEECCCCcccEE
Confidence 9999999999999976666676664 899999999987643
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.92 E-value=1.4e-09 Score=122.77 Aligned_cols=93 Identities=14% Similarity=0.223 Sum_probs=82.9
Q ss_pred ceeEEEEEEcCCCCCCCC-----------------CChhhc--ccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc
Q 007307 422 TAVVISQIDLGSQGLKGY-----------------ISDKIS--LLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~-----------------ip~~~~--~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 482 (608)
...+|+.|+|++|.++|. +|..++ +|++|++|+|++|++.|.+|..++++++|+.|+|++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 445789999999999996 999999 9999999999999999999999999999999999999
Q ss_pred c-ccc-cCchhhhhc-----cCCCCeEeecCCCCCCCCCC
Q 007307 483 L-LEG-RVPEELYSI-----GVHGGAFDLSGNKGLCGAPS 515 (608)
Q Consensus 483 ~-l~G-~iP~~l~~~-----~~~l~~l~l~~N~~~c~~p~ 515 (608)
+ ++| .+|..+..+ ...++.+++++|.+. ..|.
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 8 999 999998876 137899999999877 4543
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.88 E-value=1.3e-09 Score=121.92 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=83.0
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
...|+.|+|++|+|++.+|..|+.|++|+.|+|++|+|++..|..+.++++|++|+|++|++++..|..+..+..+++.+
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 34688999999999999999999999999999999999998899999999999999999999999999888776689999
Q ss_pred eecCCCCCC
Q 007307 503 DLSGNKGLC 511 (608)
Q Consensus 503 ~l~~N~~~c 511 (608)
++++|++.|
T Consensus 573 ~L~~Np~~C 581 (635)
T 4g8a_A 573 NLTQNDFAC 581 (635)
T ss_dssp ECTTCCBCC
T ss_pred EeeCCCCcc
Confidence 999999999
No 30
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.86 E-value=2.5e-09 Score=104.05 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=77.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|+|+...+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+. .++.++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMH 158 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEE
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEE
Confidence 3578999999999955555579999999999999999999999999999999999999999987776676664 789999
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.|
T Consensus 159 L~~N~~~c 166 (220)
T 2v9t_B 159 LAQNPFIC 166 (220)
T ss_dssp CCSSCEEC
T ss_pred eCCCCcCC
Confidence 99999988
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.86 E-value=2e-09 Score=109.32 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=65.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..+.++++|+.|+|++|+++ .+|..+.... .++.++
T Consensus 124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~-~L~~l~ 201 (290)
T 1p9a_G 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH-LLPFAF 201 (290)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC-CCSEEE
T ss_pred CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc-cCCeEE
Confidence 34677888888888666666778888888888888888544455677888888888888887 6777766654 677888
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.|
T Consensus 202 L~~Np~~C 209 (290)
T 1p9a_G 202 LHGNPWLC 209 (290)
T ss_dssp CCSCCBCC
T ss_pred eCCCCccC
Confidence 88888877
No 32
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.85 E-value=1e-08 Score=102.80 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=69.9
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.++.|+|++|++++..+..|..+++|++|+|++|.++...+..+.++++|+.|+|++|++++..+..+..+. .++.|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc-CCCEEEC
Confidence 478899999999976667899999999999999999855555668899999999999999865555555554 7889999
Q ss_pred cCCCCCCC
Q 007307 505 SGNKGLCG 512 (608)
Q Consensus 505 ~~N~~~c~ 512 (608)
++|.+..-
T Consensus 117 ~~n~l~~~ 124 (270)
T 2o6q_A 117 DRNQLKSL 124 (270)
T ss_dssp CSSCCCCC
T ss_pred CCCccCee
Confidence 98886553
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.84 E-value=2.5e-09 Score=107.90 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=62.9
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..+..+..+. .++.++
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~ 231 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLR 231 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEE
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc-ccCEEe
Confidence 3467777777777755555577777778888888877777777777777788888888877765555555553 677778
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.|
T Consensus 232 l~~N~~~c 239 (285)
T 1ozn_A 232 LNDNPWVC 239 (285)
T ss_dssp CCSSCEEC
T ss_pred ccCCCccC
Confidence 88877776
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.84 E-value=4e-09 Score=113.62 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=87.7
Q ss_pred CCCCCCCCccCcceeecCCCCC----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCC-ccccCCCCC
Q 007307 400 DPCAPTNWDAWEGITCHPNKDE----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIP-DSLTSSSKL 474 (608)
Q Consensus 400 ~pc~p~~~~~w~gv~c~~~~~~----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP-~~l~~l~~L 474 (608)
+||...+.|....+.|...+.. .+.+++.|+|++|.+++..|..|+.+++|++|+|++|.+.+.+| ..|.++++|
T Consensus 2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 4665433233344888754321 22468999999999998889999999999999999999998875 679999999
Q ss_pred cEEEcccccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 475 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 475 ~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
++|+|++|++++..|..+..+. .++.|++++|.+..
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 117 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLA-NLEVLTLTQCNLDG 117 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCT-TCCEEECTTSCCBT
T ss_pred CEEeCCCCccCccChhhccCcc-cCCEEeCCCCCCCc
Confidence 9999999999998899988875 89999999998754
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.82 E-value=5.4e-09 Score=112.89 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=85.1
Q ss_pred CcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccc
Q 007307 410 WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 484 (608)
Q Consensus 410 w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l 484 (608)
|..+.|...+.. .+..++.|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 567888754311 224688999999999998899999999999999999999988889999999999999999999
Q ss_pred cccCchhhhhccCCCCeEeecCCCCCC
Q 007307 485 EGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 485 ~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
++..+..+..+. +|+.|++++|++..
T Consensus 136 ~~~~~~~~~~l~-~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 136 TVIPSGAFEYLS-KLRELWLRNNPIES 161 (452)
T ss_dssp SBCCTTTSSSCT-TCCEEECCSCCCCE
T ss_pred CccChhhhcccC-CCCEEECCCCCcce
Confidence 965555566554 89999999998764
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.82 E-value=1.2e-08 Score=105.21 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=87.4
Q ss_pred CCCCCCCccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCc
Q 007307 401 PCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQ 475 (608)
Q Consensus 401 pc~p~~~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 475 (608)
.|...+.|.|..+.|...... ....++.|+|++|++++..+..|+.+++|+.|+|++|++++..|..++++++|+
T Consensus 24 ~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 24 VCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp CCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 343333478999999753311 123578899999999987777899999999999999999988899999999999
Q ss_pred EEEcccccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 476 LVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 476 ~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
.|+|++|+++ .+|..+. ..++.+++++|.+..
T Consensus 104 ~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP---KTLQELRVHENEITK 135 (330)
T ss_dssp EEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCB
T ss_pred EEECCCCcCC-ccChhhc---ccccEEECCCCcccc
Confidence 9999999998 6777654 478999999988654
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.82 E-value=6.1e-09 Score=97.33 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=74.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+. .++.+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l 131 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWL 131 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEEC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc-ccCEEEe
Confidence 478899999999976666789999999999999999987777889999999999999999964444445454 8899999
Q ss_pred cCCCCCCC
Q 007307 505 SGNKGLCG 512 (608)
Q Consensus 505 ~~N~~~c~ 512 (608)
++|++.|.
T Consensus 132 ~~N~~~~~ 139 (177)
T 2o6r_A 132 HTNPWDCS 139 (177)
T ss_dssp CSSCBCCC
T ss_pred cCCCeecc
Confidence 99998884
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.82 E-value=3.5e-09 Score=118.48 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=77.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..++.|||++|+|++..+..|.+|++|++|+|++|++++..|.+|.+|++|++|+|++|+|++..|..+..+. +|+.|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-TCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-CCCEEE
Confidence 4689999999999977778899999999999999999977788899999999999999999976666677765 899999
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++..
T Consensus 131 Ls~N~l~~ 138 (635)
T 4g8a_A 131 AVETNLAS 138 (635)
T ss_dssp CTTSCCCC
T ss_pred CCCCcCCC
Confidence 99998765
No 39
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.80 E-value=5.1e-09 Score=99.51 Aligned_cols=89 Identities=16% Similarity=0.231 Sum_probs=82.7
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..+|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.++++|+.|+|++|++++.+|..+..+. .++.+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L 131 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSL 131 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEE
Confidence 34689999999999999999999999999999999999999888899999999999999999999999887775 89999
Q ss_pred eecCCCCCCC
Q 007307 503 DLSGNKGLCG 512 (608)
Q Consensus 503 ~l~~N~~~c~ 512 (608)
++++|++.|.
T Consensus 132 ~L~~N~l~c~ 141 (192)
T 1w8a_A 132 NLASNPFNCN 141 (192)
T ss_dssp ECTTCCBCCS
T ss_pred EeCCCCccCc
Confidence 9999999883
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.79 E-value=1.1e-08 Score=103.10 Aligned_cols=88 Identities=17% Similarity=0.085 Sum_probs=73.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccccc-ccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL-LEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~-l~G~iP~~l~~~~~~l~~l 502 (608)
..++.|+|++|++++..+..|..+++|+.|+|++|.+++..|..+.++++|+.|+|++|+ ++...|..+..+. .++.+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG-RLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT-TCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc-CCCEE
Confidence 467889999999997777789999999999999999998888899999999999999997 6655577776664 78899
Q ss_pred eecCCCCCCC
Q 007307 503 DLSGNKGLCG 512 (608)
Q Consensus 503 ~l~~N~~~c~ 512 (608)
++++|.+...
T Consensus 111 ~l~~n~l~~~ 120 (285)
T 1ozn_A 111 HLDRCGLQEL 120 (285)
T ss_dssp ECTTSCCCCC
T ss_pred ECCCCcCCEE
Confidence 9999886553
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.79 E-value=7.1e-09 Score=104.06 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=77.9
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..++.|+|++|++++..+..|..+++|+.|+|++|++.+..+..+.++++|+.|+|++|++++..|..+..+. .++.++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-SLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT-TCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc-cccEEE
Confidence 3588999999999977777899999999999999999977777899999999999999999988778787775 899999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|.+..-
T Consensus 107 l~~n~l~~~ 115 (276)
T 2z62_A 107 AVETNLASL 115 (276)
T ss_dssp CTTSCCCCS
T ss_pred CCCCCcccc
Confidence 999986553
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.77 E-value=4.4e-09 Score=113.30 Aligned_cols=89 Identities=21% Similarity=0.154 Sum_probs=78.7
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|.+++..|..++.+++|+.|+|++|++++..|..+.++++|+.|+|++|++++..+..+..+. .++.+++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l 402 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT-SLQKIWL 402 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEEC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC-cccEEEc
Confidence 478999999999988888999999999999999999998899999999999999999999975554555554 8999999
Q ss_pred cCCCCCCCCC
Q 007307 505 SGNKGLCGAP 514 (608)
Q Consensus 505 ~~N~~~c~~p 514 (608)
++|++.|..|
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 9999999543
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.77 E-value=2e-09 Score=116.37 Aligned_cols=88 Identities=15% Similarity=0.109 Sum_probs=79.1
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+.++++|+.|+|++|++++..+..+..+. .++.++
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 296 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR-YLVELH 296 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT-TCCEEE
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc-CCCEEE
Confidence 4688999999999998899999999999999999999999999999999999999999999966555555554 889999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|++.|.
T Consensus 297 L~~Np~~Cd 305 (452)
T 3zyi_A 297 LHHNPWNCD 305 (452)
T ss_dssp CCSSCEECS
T ss_pred ccCCCcCCC
Confidence 999999883
No 44
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.77 E-value=1.4e-08 Score=112.90 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=36.6
Q ss_pred EEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecC
Q 007307 427 SQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSG 506 (608)
Q Consensus 427 ~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~ 506 (608)
+.|+|++|+|++ +|. ++.|++|+.|+|++|+|+ .+|..+++|++|+.|+|++|++++ +| .+..+. .|+.|++++
T Consensus 444 ~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~-~L~~L~Ls~ 517 (567)
T 1dce_A 444 RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP-RLQELLLCN 517 (567)
T ss_dssp SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS-SCCEEECCS
T ss_pred eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC-CCcEEECCC
Confidence 345555555543 343 555555555555555554 445555555555555555555553 44 333332 444555554
Q ss_pred CC
Q 007307 507 NK 508 (608)
Q Consensus 507 N~ 508 (608)
|.
T Consensus 518 N~ 519 (567)
T 1dce_A 518 NR 519 (567)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.77 E-value=1.1e-08 Score=98.05 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=75.7
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+..+..+. .++.+++
T Consensus 77 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l 155 (208)
T 2o6s_A 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWL 155 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEEC
T ss_pred CcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC-CccEEEe
Confidence 478999999999976666789999999999999999977777789999999999999999975555566554 8999999
Q ss_pred cCCCCCCCC
Q 007307 505 SGNKGLCGA 513 (608)
Q Consensus 505 ~~N~~~c~~ 513 (608)
++|++.|..
T Consensus 156 ~~N~~~~~~ 164 (208)
T 2o6s_A 156 HDNPWDCTC 164 (208)
T ss_dssp CSCCBCCCT
T ss_pred cCCCeecCC
Confidence 999988843
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.77 E-value=2.1e-08 Score=100.57 Aligned_cols=85 Identities=20% Similarity=0.167 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..++++++|+.|+|++|++++..|..+..+. .++.+++
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l 164 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-NLTELDL 164 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEEC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-cCCEEEC
Confidence 456677777777765555567777777777777777766666667777777777777777755444444443 6677777
Q ss_pred cCCCCC
Q 007307 505 SGNKGL 510 (608)
Q Consensus 505 ~~N~~~ 510 (608)
++|++.
T Consensus 165 ~~n~l~ 170 (272)
T 3rfs_A 165 SYNQLQ 170 (272)
T ss_dssp CSSCCC
T ss_pred CCCCcC
Confidence 777654
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.77 E-value=1.5e-09 Score=121.39 Aligned_cols=89 Identities=18% Similarity=0.104 Sum_probs=78.2
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
...|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|+|++|+++ .+|..+..+...++.+
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l 550 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF 550 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEE
Confidence 346888999999999888888999999999999999999888999999999999999999998 6888777765468999
Q ss_pred eecCCCCCCC
Q 007307 503 DLSGNKGLCG 512 (608)
Q Consensus 503 ~l~~N~~~c~ 512 (608)
++++|++.|.
T Consensus 551 ~l~~N~~~c~ 560 (606)
T 3vq2_A 551 NLTNNSVACI 560 (606)
T ss_dssp ECCSCCCCCS
T ss_pred EccCCCcccC
Confidence 9999999884
No 48
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.76 E-value=1.2e-08 Score=102.43 Aligned_cols=89 Identities=20% Similarity=0.176 Sum_probs=77.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..++.+++|+.|+|++|++++..|..+..+. .++.++
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 211 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIW 211 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEE
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc-CCCEEE
Confidence 3578999999999977777789999999999999999987777889999999999999999987776666664 889999
Q ss_pred ecCCCCCCCC
Q 007307 504 LSGNKGLCGA 513 (608)
Q Consensus 504 l~~N~~~c~~ 513 (608)
+++|++.|..
T Consensus 212 l~~N~~~~~~ 221 (272)
T 3rfs_A 212 LHDNPWDCTC 221 (272)
T ss_dssp CCSSCBCCCT
T ss_pred ccCCCccccC
Confidence 9999998853
No 49
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.74 E-value=4.4e-09 Score=114.85 Aligned_cols=84 Identities=21% Similarity=0.094 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCcccc-CCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLT-SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~-~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|++++..+.. .+ ..++.|+
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~--~l-~~L~~L~ 197 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV--VF-AKLKTLD 197 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC--CC-TTCCEEE
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc--cC-CCCCEEE
Confidence 467788888888877777788888888888888888877777765 6788888888888887652221 22 3677788
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|.+..
T Consensus 198 Ls~N~l~~ 205 (487)
T 3oja_A 198 LSSNKLAF 205 (487)
T ss_dssp CCSSCCCE
T ss_pred CCCCCCCC
Confidence 88776543
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.74 E-value=1.8e-08 Score=104.96 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=83.0
Q ss_pred ccCcceeecCCCC-------CceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcc
Q 007307 408 DAWEGITCHPNKD-------ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLN 480 (608)
Q Consensus 408 ~~w~gv~c~~~~~-------~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls 480 (608)
|.|.|+ |+.... .....++.|+|++|++++..+..+..+++|+.|+|++|++++..|..++++++|++|+|+
T Consensus 30 C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 30 CDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp ECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 688887 653211 112368999999999997666689999999999999999998888899999999999999
Q ss_pred cccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 481 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 481 ~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
+|++++..+..+..+. +++.+++++|++..
T Consensus 109 ~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 138 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLS-SLTFLNLLGNPYKT 138 (353)
T ss_dssp SSCCSSCCHHHHTTCT-TCSEEECTTCCCSS
T ss_pred CCcCCcCCHhHhCCCc-cCCEEECCCCCCcc
Confidence 9999964444466664 89999999998764
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.74 E-value=9e-09 Score=111.74 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=85.0
Q ss_pred cCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccccc
Q 007307 409 AWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 483 (608)
Q Consensus 409 ~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~ 483 (608)
.|..+.|...... .+..++.|+|++|++++..|..|..+++|+.|+|++|.+++..|..|.++++|+.|+|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4678888754311 23467899999999998888899999999999999999998889999999999999999999
Q ss_pred ccccCchhhhhccCCCCeEeecCCCCCCC
Q 007307 484 LEGRVPEELYSIGVHGGAFDLSGNKGLCG 512 (608)
Q Consensus 484 l~G~iP~~l~~~~~~l~~l~l~~N~~~c~ 512 (608)
+++..+..+..+. .|+.|++++|.+...
T Consensus 92 l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 92 LKLIPLGVFTGLS-NLTKLDISENKIVIL 119 (477)
T ss_dssp CCSCCTTSSTTCT-TCCEEECTTSCCCEE
T ss_pred CCccCcccccCCC-CCCEEECCCCccccC
Confidence 9964444455554 899999999987653
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.74 E-value=1.4e-08 Score=109.24 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=88.3
Q ss_pred CCCCCCCCcc--CcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCC
Q 007307 400 DPCAPTNWDA--WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSS 472 (608)
Q Consensus 400 ~pc~p~~~~~--w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~ 472 (608)
.+|...+.|. |..+.|...+.. ....++.|+|++|++++..+..|.++++|+.|+|++|++.+..|..|.+++
T Consensus 33 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 33 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred ccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 3554443343 567888754321 123578899999999988889999999999999999999988888999999
Q ss_pred CCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 473 KLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 473 ~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
+|+.|+|++|++++..+..+..+. +|+.|++++|++..
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIES 150 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCS-SCCEEECCSCCCCE
T ss_pred cCCEEECCCCcCCeeCHhHhhccc-cCceeeCCCCcccc
Confidence 999999999999965555566654 89999999998764
No 53
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.73 E-value=3.3e-09 Score=116.41 Aligned_cols=88 Identities=18% Similarity=0.094 Sum_probs=74.4
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCC--CCCccccCCCCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTG--SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
..|+.|+|++|++++.+|..++.+++|+.|+|++|++++ .+|..++++++|+.|+|++|++++.+|.........++.
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 457889999999999899999999999999999999997 677889999999999999999998788753332347889
Q ss_pred EeecCCCCCC
Q 007307 502 FDLSGNKGLC 511 (608)
Q Consensus 502 l~l~~N~~~c 511 (608)
+++++|++..
T Consensus 404 L~Ls~N~l~~ 413 (520)
T 2z7x_B 404 LNMSSNILTD 413 (520)
T ss_dssp EECCSSCCCG
T ss_pred EECcCCCCCc
Confidence 9999988654
No 54
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.72 E-value=2.7e-09 Score=119.36 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=76.9
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..|..|+.+++|+.|+|++|++++.+|..+.+++.| .|+|++|++++..|..+..+. .++.++
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 553 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS-QQRTIN 553 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHH-TSSEEE
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCC-CCCEEe
Confidence 467889999999998888899999999999999999999999999999999 999999999988888777765 788999
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.|
T Consensus 554 l~~N~~~c 561 (606)
T 3t6q_A 554 LRQNPLDC 561 (606)
T ss_dssp CTTCCEEC
T ss_pred CCCCCccc
Confidence 99999988
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.72 E-value=5.3e-09 Score=106.22 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=73.4
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchh-hhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~-l~~~~~~l~~l 502 (608)
.+|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++ +|.. +..+. .++.+
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~-~L~~L 177 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLE-NLDTL 177 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCT-TCCEE
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcC-CCCEE
Confidence 357899999999997777889999999999999999997777778999999999999999995 5554 44454 88999
Q ss_pred eecCCCCCC
Q 007307 503 DLSGNKGLC 511 (608)
Q Consensus 503 ~l~~N~~~c 511 (608)
++++|++..
T Consensus 178 ~L~~N~l~~ 186 (290)
T 1p9a_G 178 LLQENSLYT 186 (290)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCcCCc
Confidence 999999764
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.71 E-value=2.3e-08 Score=103.27 Aligned_cols=101 Identities=17% Similarity=0.167 Sum_probs=85.7
Q ss_pred CccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccc
Q 007307 407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 481 (608)
Q Consensus 407 ~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~ 481 (608)
.|.|..+.|...... ....++.|+|++|.+++..|..|..+++|+.|+|++|++++..|..++++++|++|+|++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 378999999754321 123688999999999987788999999999999999999988899999999999999999
Q ss_pred ccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 482 NLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 482 N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
|+++ .+|..+. ..++.+++++|.+..
T Consensus 112 n~l~-~l~~~~~---~~L~~L~l~~n~i~~ 137 (332)
T 2ft3_A 112 NHLV-EIPPNLP---SSLVELRIHDNRIRK 137 (332)
T ss_dssp SCCC-SCCSSCC---TTCCEEECCSSCCCC
T ss_pred CcCC-ccCcccc---ccCCEEECCCCccCc
Confidence 9998 6787654 478999999998754
No 57
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=2e-08 Score=90.88 Aligned_cols=82 Identities=20% Similarity=0.177 Sum_probs=70.4
Q ss_pred EEEEEEcCCCCCC-CCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLK-GYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
+++.|++++|.++ +.+|..+..+++|+.|+|++|.+++. ..++++++|+.|+|++|++++.+|..+..+. .++.++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-NLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-TCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-CCCEEE
Confidence 4678999999998 88898889999999999999999866 7788999999999999999988888776665 788999
Q ss_pred ecCCCC
Q 007307 504 LSGNKG 509 (608)
Q Consensus 504 l~~N~~ 509 (608)
+++|++
T Consensus 95 ls~N~i 100 (149)
T 2je0_A 95 LSGNKI 100 (149)
T ss_dssp CTTSCC
T ss_pred CCCCcC
Confidence 988864
No 58
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.69 E-value=2.4e-09 Score=122.65 Aligned_cols=89 Identities=22% Similarity=0.241 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..|++|++|+.|+|++|+|+|.+|..+.........++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 45789999999999 88999999999999999999997 89999999999999999999999999988754321112244
Q ss_pred ecCCCCCCCCC
Q 007307 504 LSGNKGLCGAP 514 (608)
Q Consensus 504 l~~N~~~c~~p 514 (608)
+++|.+.+..|
T Consensus 348 l~~N~l~~~~p 358 (727)
T 4b8c_D 348 LRDNRPEIPLP 358 (727)
T ss_dssp HHHCCCCCCCC
T ss_pred hccCcccCcCc
Confidence 55555554433
No 59
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.68 E-value=1.9e-08 Score=112.40 Aligned_cols=88 Identities=20% Similarity=0.103 Sum_probs=80.3
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+++.|+|++|++++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..+..+. +++.++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT-SLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT-TCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc-cCCEEE
Confidence 4688999999999988888999999999999999999988899999999999999999999998899888875 899999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|.+...
T Consensus 111 L~~n~l~~~ 119 (606)
T 3vq2_A 111 AVETKLASL 119 (606)
T ss_dssp CTTSCCCCS
T ss_pred ccCCccccc
Confidence 999987653
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.67 E-value=1.7e-08 Score=111.49 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=81.1
Q ss_pred ccCcceeecCCCC-------CceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcc
Q 007307 408 DAWEGITCHPNKD-------ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLN 480 (608)
Q Consensus 408 ~~w~gv~c~~~~~-------~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls 480 (608)
|.|.|+ |+.... .....++.|+|++|++++..|..|+.+++|++|+|++|++++..|..|+++++|++|+|+
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 578887 763211 112367889999999998888889999999999999999998888889999999999999
Q ss_pred cccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 481 NNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 481 ~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
+|++++..|..+..+. +++.+++++|.+..
T Consensus 83 ~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLS-SLKYLNLMGNPYQT 112 (549)
T ss_dssp TSCCCSCCHHHHTTCT-TCCEEECTTCCCSS
T ss_pred CCccCccCHHHhccCC-CCcEEECCCCcccc
Confidence 9999887777677664 78888888887654
No 61
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=2e-08 Score=111.64 Aligned_cols=86 Identities=24% Similarity=0.307 Sum_probs=78.8
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccC-chhhhhccCCCCe
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRV-PEELYSIGVHGGA 501 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~i-P~~l~~~~~~l~~ 501 (608)
..+|+.|+|++|.|+ .+|..|+.|++|+.|+|++|+|++ +| .+++|++|+.|+|++|++++.+ |..+..+. .|+.
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~ 537 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVL 537 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT-TCCE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC-CCCE
Confidence 446899999999999 899999999999999999999997 78 8999999999999999999887 99998876 8999
Q ss_pred EeecCCCCCCC
Q 007307 502 FDLSGNKGLCG 512 (608)
Q Consensus 502 l~l~~N~~~c~ 512 (608)
|++++|++...
T Consensus 538 L~L~~N~l~~~ 548 (567)
T 1dce_A 538 LNLQGNSLCQE 548 (567)
T ss_dssp EECTTSGGGGS
T ss_pred EEecCCcCCCC
Confidence 99999996553
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.66 E-value=1.4e-08 Score=103.53 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=77.3
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+...++.++
T Consensus 175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~ 254 (306)
T 2z66_A 175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254 (306)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEE
T ss_pred cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEE
Confidence 35788999999999888888999999999999999999777778899999999999999999988888877655788999
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.|
T Consensus 255 L~~N~~~~ 262 (306)
T 2z66_A 255 LTQNDFAC 262 (306)
T ss_dssp CTTCCEEC
T ss_pred ccCCCeec
Confidence 99999888
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.65 E-value=2.2e-08 Score=102.59 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=56.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhccc-----ccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccC--chhh--hh
Q 007307 424 VVISQIDLGSQGLKGYISDKISLL-----SNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRV--PEEL--YS 494 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L-----~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~i--P~~l--~~ 494 (608)
.+|+.|+|++|++++. |..++.+ ++|++|+|++|++.+..|..++++++|+.|+|++|++.|.+ |..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 3466777777777765 6666666 77777777777777666677777777777777777776652 3333 33
Q ss_pred ccCCCCeEeecCCCCC
Q 007307 495 IGVHGGAFDLSGNKGL 510 (608)
Q Consensus 495 ~~~~l~~l~l~~N~~~ 510 (608)
+ ..++.+++++|.+.
T Consensus 200 l-~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 200 F-PTLQVLALRNAGME 214 (312)
T ss_dssp C-TTCCEEECTTSCCC
T ss_pred C-CCCCEEECCCCcCc
Confidence 3 36677777776643
No 64
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.65 E-value=2.8e-08 Score=91.85 Aligned_cols=84 Identities=21% Similarity=0.176 Sum_probs=74.9
Q ss_pred EEEEEEcCCCCCC-CCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLK-GYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.++.|+|++|+++ |.+|..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.+|..+..+. .++.++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-NLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-TCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-CCCEEe
Confidence 4788999999998 89999999999999999999999965 7889999999999999999988888777665 899999
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|.+..
T Consensus 102 Ls~N~l~~ 109 (168)
T 2ell_A 102 LSGNKLKD 109 (168)
T ss_dssp CBSSSCCS
T ss_pred ccCCccCc
Confidence 99998644
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.61 E-value=1.2e-08 Score=118.93 Aligned_cols=84 Identities=21% Similarity=0.279 Sum_probs=72.9
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..+|+.|+|++|++++..|..|..+++|+.|+|++|+|++..|..+. ++|+.|+|++|+|+|.+|..+. .++.+
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~----~L~~l 552 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV----SLSVL 552 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS----SCCEE
T ss_pred cccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC----CcCEE
Confidence 45789999999999988888899999999999999999976666665 8899999999999999887653 67899
Q ss_pred eecCCCCCCC
Q 007307 503 DLSGNKGLCG 512 (608)
Q Consensus 503 ~l~~N~~~c~ 512 (608)
++++|++.|.
T Consensus 553 ~l~~Np~~C~ 562 (844)
T 3j0a_A 553 DITHNKFICE 562 (844)
T ss_dssp EEEEECCCCS
T ss_pred EecCCCcccc
Confidence 9999999993
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.60 E-value=5.2e-08 Score=97.53 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=73.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+.++++|+.|+|++|++++..+..+..+. .++.++
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 211 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQ 211 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEE
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEE
Confidence 3578899999999976666689999999999999999977777789999999999999999965444555554 788999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|++.|.
T Consensus 212 l~~N~~~c~ 220 (270)
T 2o6q_A 212 LQENPWDCT 220 (270)
T ss_dssp CCSSCBCCS
T ss_pred ecCCCeeCC
Confidence 999998883
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.60 E-value=1.4e-08 Score=105.75 Aligned_cols=158 Identities=15% Similarity=0.144 Sum_probs=106.1
Q ss_pred eeeEeecCCceEEEEecccchhhHhhhhhcccccCCCCCCchHH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCcce
Q 007307 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (608)
Q Consensus 335 ~~~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~~~~~~~~-~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~gv 413 (608)
.+..+++++|.+....+..... +..++.+.+..+....++.+ +..+..++. +.... + ...++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~----n----------~l~~l 139 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLSSSWFKPLSSLTF-LNLLG----N----------PYKTL 139 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSSCCHHHHTTCTTCSE-EECTT----C----------CCSSS
T ss_pred CCCEEECCCCccCccCHhhcCC--CCCCCEEECCCCcCCcCCHhHhCCCccCCE-EECCC----C----------CCccc
Confidence 4567778888887544444443 56677888877766666654 333333332 11111 1 01111
Q ss_pred eecCCCCCceeEEEEEEcCCCC-CCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhh
Q 007307 414 TCHPNKDETAVVISQIDLGSQG-LKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 492 (608)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~-l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l 492 (608)
.-. .......+|+.|++++|+ +++..+..++.+++|+.|++++|.+.+..|..+.++++|+.|++++|+++ .+|..+
T Consensus 140 ~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~ 217 (353)
T 2z80_A 140 GET-SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217 (353)
T ss_dssp CSS-CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHH
T ss_pred Cch-hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhh
Confidence 000 000123457899999984 66656778999999999999999999988999999999999999999986 566665
Q ss_pred hhccCCCCeEeecCCCCCC
Q 007307 493 YSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 493 ~~~~~~l~~l~l~~N~~~c 511 (608)
......++.+++++|.+..
T Consensus 218 ~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp HHHTTTEEEEEEESCBCTT
T ss_pred hhhcccccEEECCCCcccc
Confidence 5444578899999998765
No 68
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.59 E-value=2.3e-08 Score=90.48 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=68.8
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccccccccc-CchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR-VPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~-iP~~l~~~~~~l~~l 502 (608)
.+|+.|+|++|.+++. ..++.+++|+.|+|++|.+++.+|..+..+++|+.|++++|++++. .|..+..+. .++.+
T Consensus 42 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~-~L~~L 118 (149)
T 2je0_A 42 EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE-NLKSL 118 (149)
T ss_dssp TTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCT-TCCEE
T ss_pred CCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCC-CCCEE
Confidence 3578899999999865 7788899999999999999988888888899999999999999873 446666664 78899
Q ss_pred eecCCCCC
Q 007307 503 DLSGNKGL 510 (608)
Q Consensus 503 ~l~~N~~~ 510 (608)
++++|++.
T Consensus 119 ~l~~N~l~ 126 (149)
T 2je0_A 119 DLFNCEVT 126 (149)
T ss_dssp ECTTCGGG
T ss_pred eCcCCccc
Confidence 99988753
No 69
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.58 E-value=1.3e-07 Score=87.99 Aligned_cols=84 Identities=20% Similarity=0.152 Sum_probs=72.2
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
.+.+++++|+|+ .+|..+. ++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..+..+. +++.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECC
Confidence 457999999999 5887764 8999999999999998899999999999999999999976555556664 89999999
Q ss_pred CCCCCCCC
Q 007307 506 GNKGLCGA 513 (608)
Q Consensus 506 ~N~~~c~~ 513 (608)
+|++..-.
T Consensus 87 ~N~l~~~~ 94 (170)
T 3g39_A 87 DNQLKSIP 94 (170)
T ss_dssp SSCCCCCC
T ss_pred CCccCEeC
Confidence 99976543
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.58 E-value=1.2e-08 Score=104.00 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=78.4
Q ss_pred eEEEEEEcCCCCCCC-CCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKG-YISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..+..+..+. .++.+
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L 228 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVL 228 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc-cCCEe
Confidence 357899999999987 5788899999999999999999988899999999999999999999987666666654 89999
Q ss_pred eecCCCCCCCCC
Q 007307 503 DLSGNKGLCGAP 514 (608)
Q Consensus 503 ~l~~N~~~c~~p 514 (608)
++++|++....+
T Consensus 229 ~L~~N~l~~~~~ 240 (306)
T 2z66_A 229 DYSLNHIMTSKK 240 (306)
T ss_dssp ECTTSCCCBCSS
T ss_pred ECCCCCCcccCH
Confidence 999999776544
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.57 E-value=3.1e-08 Score=106.51 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=79.4
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+. .++.++
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~ 285 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH-HLERIH 285 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT-TCCEEE
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc-CCCEEE
Confidence 4688999999999998899999999999999999999999999999999999999999999976665555554 889999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|++.|.
T Consensus 286 L~~Np~~Cd 294 (440)
T 3zyj_A 286 LHHNPWNCN 294 (440)
T ss_dssp CCSSCEECS
T ss_pred cCCCCccCC
Confidence 999999983
No 72
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.57 E-value=1.4e-07 Score=88.09 Aligned_cols=81 Identities=20% Similarity=0.185 Sum_probs=70.3
Q ss_pred EEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecC
Q 007307 427 SQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSG 506 (608)
Q Consensus 427 ~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~ 506 (608)
+.+++++|+|+ .+|..+. ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+..+. .|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT-QLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc-hhhEEECCC
Confidence 46999999997 8888775 8999999999999999899999999999999999999974444455554 899999999
Q ss_pred CCCCC
Q 007307 507 NKGLC 511 (608)
Q Consensus 507 N~~~c 511 (608)
|++..
T Consensus 91 N~l~~ 95 (174)
T 2r9u_A 91 NHLKS 95 (174)
T ss_dssp SCCCC
T ss_pred Cccce
Confidence 99765
No 73
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.56 E-value=2.8e-08 Score=113.79 Aligned_cols=81 Identities=28% Similarity=0.384 Sum_probs=42.2
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..|++|++|+.|+|++|+|+ .+|..+..+. .|+.|+|+
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~ 324 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVE 324 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCC
Confidence 444555555555 45555555555555555555555 45555555555555555555554 4455444443 45555555
Q ss_pred CCCCC
Q 007307 506 GNKGL 510 (608)
Q Consensus 506 ~N~~~ 510 (608)
+|++.
T Consensus 325 ~N~l~ 329 (727)
T 4b8c_D 325 GNPLE 329 (727)
T ss_dssp TSCCC
T ss_pred CCccC
Confidence 55544
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.55 E-value=8e-08 Score=94.19 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=75.2
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCc-CCCCCCccccCCCCCcEEEccc-ccccccCchhhhhccCCCCe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQ-FTGSIPDSLTSSSKLQLVLLNN-NLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~G~iP~~l~~l~~L~~L~Ls~-N~l~G~iP~~l~~~~~~l~~ 501 (608)
..++.|+|++|++++..+..|..+++|+.|+|++|. +++..+..+.++++|+.|++++ |++++..+..+..+. .++.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT-TCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC-CCCE
Confidence 358899999999997777789999999999999997 7755556899999999999998 999976556666654 8999
Q ss_pred EeecCCCCCCCCCC
Q 007307 502 FDLSGNKGLCGAPS 515 (608)
Q Consensus 502 l~l~~N~~~c~~p~ 515 (608)
+++++|++.. .|.
T Consensus 110 L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD 122 (239)
T ss_dssp EEEEEECCCS-CCC
T ss_pred EeCCCCCCcc-ccc
Confidence 9999998655 443
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.54 E-value=8.7e-08 Score=108.68 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=78.4
Q ss_pred ccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc
Q 007307 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 408 ~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 482 (608)
|.+.-+.|...+.. .+.+++.|+|++|.+++..+..|+++++|++|+|++|.+++..|..++++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 34555666542211 1246788999999999877778999999999999999999888888899999999999999
Q ss_pred cccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 483 LLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 483 ~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
++++..+..+..+. +++.+++++|.+..
T Consensus 84 ~l~~l~~~~~~~l~-~L~~L~L~~n~l~~ 111 (680)
T 1ziw_A 84 ELSQLSDKTFAFCT-NLTELHLMSNSIQK 111 (680)
T ss_dssp CCCCCCTTTTTTCT-TCSEEECCSSCCCC
T ss_pred ccCccChhhhccCC-CCCEEECCCCccCc
Confidence 99854444566664 78889998887654
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.53 E-value=9.7e-08 Score=97.59 Aligned_cols=84 Identities=15% Similarity=0.137 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCCCCCChhh--cccccCCeecccCCcCCCCCC----ccccCCCCCcEEEcccccccccCchhhhhccCCC
Q 007307 426 ISQIDLGSQGLKGYISDKI--SLLSNLVNLDLSDNQFTGSIP----DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHG 499 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~--~~L~~L~~L~Ls~N~l~G~iP----~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l 499 (608)
|+.|+|++|.+++.+|..+ ..+++|+.|+|++|.+.+..| ..+..+++|+.|+|++|++++..|..+..+. .+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP-AL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT-TC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC-CC
Confidence 5677777777777777777 777778888888887777655 3345677777888888877766666665554 67
Q ss_pred CeEeecCCCCC
Q 007307 500 GAFDLSGNKGL 510 (608)
Q Consensus 500 ~~l~l~~N~~~ 510 (608)
+.|++++|++.
T Consensus 172 ~~L~Ls~N~l~ 182 (310)
T 4glp_A 172 TSLDLSDNPGL 182 (310)
T ss_dssp CEEECCSCTTC
T ss_pred CEEECCCCCCc
Confidence 77777777753
No 77
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.2e-07 Score=98.35 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=73.5
Q ss_pred EEEcCCC-CCCCCCChhhcccccCCeecccC-CcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 428 QIDLGSQ-GLKGYISDKISLLSNLVNLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 428 ~L~Ls~n-~l~g~ip~~~~~L~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
.++++++ +|+ .||. |..+++|+.|+|++ |+|.+..|..|++|++|+.|+|++|+|+|..|..+..+. +|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc-CCCEEeCC
Confidence 4689998 899 5888 99999999999996 999988888999999999999999999998888888775 89999999
Q ss_pred CCCCCC
Q 007307 506 GNKGLC 511 (608)
Q Consensus 506 ~N~~~c 511 (608)
+|++..
T Consensus 89 ~N~l~~ 94 (347)
T 2ifg_A 89 FNALES 94 (347)
T ss_dssp SSCCSC
T ss_pred CCccce
Confidence 999764
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.51 E-value=3e-08 Score=107.25 Aligned_cols=74 Identities=26% Similarity=0.308 Sum_probs=39.9
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.|++++|++++ +|.. .++|+.|+|++|++++ +| .++++++|++|++++|++++ +|..+ ..++.++++
T Consensus 113 L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~----~~L~~L~L~ 181 (454)
T 1jl5_A 113 LKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP----PSLEFIAAG 181 (454)
T ss_dssp CCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC----TTCCEEECC
T ss_pred CcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc----ccccEEECc
Confidence 4455555555553 2211 1456666666666664 55 46666666666666666664 45432 245566666
Q ss_pred CCCCC
Q 007307 506 GNKGL 510 (608)
Q Consensus 506 ~N~~~ 510 (608)
+|.+.
T Consensus 182 ~n~l~ 186 (454)
T 1jl5_A 182 NNQLE 186 (454)
T ss_dssp SSCCS
T ss_pred CCcCC
Confidence 66543
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.50 E-value=6.7e-08 Score=107.24 Aligned_cols=89 Identities=15% Similarity=0.076 Sum_probs=75.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCC--CCCccccCCCCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTG--SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
..|+.|+|++|++++.+|..++.+++|+.|+|++|++++ .+|..+.++++|+.|+|++|++++.+|.........++.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 468899999999999999999999999999999999996 456778999999999999999998788764333347899
Q ss_pred EeecCCCCCCC
Q 007307 502 FDLSGNKGLCG 512 (608)
Q Consensus 502 l~l~~N~~~c~ 512 (608)
+++++|++...
T Consensus 433 L~l~~n~l~~~ 443 (562)
T 3a79_B 433 LNLSSNMLTGS 443 (562)
T ss_dssp EECCSSCCCGG
T ss_pred EECCCCCCCcc
Confidence 99999986543
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.50 E-value=4.4e-08 Score=107.44 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=100.4
Q ss_pred eeeEeecCCceEEEEecccchhhHhhhhhcccccCCCCCCch---HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCc
Q 007307 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVP---EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (608)
Q Consensus 335 ~~~~~~l~~n~L~~~l~~~~~~piLnalEi~~~~~~~~~~~~---~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~ 411 (608)
.+..+++++|++.+.+|..... +..++.+.+..+....++ ..+..+..++. +.. +.+ ...
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~-L~L----s~N----------~l~ 387 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGH--LTELETLILQMNQLKELSKIAEMTTQMKSLQQ-LDI----SQN----------SVS 387 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCC--CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE-EEC----CSS----------CCB
T ss_pred cccEEEeECCccChhhhhhhcc--CCCCCEEEccCCccCccccchHHHhhCCCCCE-EEC----CCC----------cCC
Confidence 4567788888887656655443 556777777776655433 22222222221 111 111 111
Q ss_pred c-eeecCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCch
Q 007307 412 G-ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE 490 (608)
Q Consensus 412 g-v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 490 (608)
+ +... .......|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|.
T Consensus 388 ~~l~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 388 YDEKKG--DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp CCGGGC--SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred cccccc--hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 1 1000 000123578899999999888877665 78999999999998 88888889999999999999998 5777
Q ss_pred h-hhhccCCCCeEeecCCCCCC
Q 007307 491 E-LYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 491 ~-l~~~~~~l~~l~l~~N~~~c 511 (608)
. +..+. .++.+++++|++.|
T Consensus 462 ~~~~~l~-~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 462 GIFDRLT-SLQKIWLHTNPWDC 482 (520)
T ss_dssp TTTTTCT-TCCEEECCSSCBCC
T ss_pred HHhccCC-cccEEECcCCCCcc
Confidence 6 55554 78899999999888
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.50 E-value=8.4e-08 Score=111.87 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=76.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCC-CccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSI-PDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~i-P~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
.+++.|+|++|.+++..|..|.+|++|+.|+|++|.+.+.+ |..|++|++|++|+|++|++++..|..+..+. +|+.|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF-HLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS-SCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc-ccCEe
Confidence 35788999999999888889999999999999999888777 67889999999999999999988888888775 78899
Q ss_pred eecCCCCCCCC
Q 007307 503 DLSGNKGLCGA 513 (608)
Q Consensus 503 ~l~~N~~~c~~ 513 (608)
++++|.+....
T Consensus 103 ~Ls~n~l~~~~ 113 (844)
T 3j0a_A 103 RLYFCGLSDAV 113 (844)
T ss_dssp ECTTCCCSSCC
T ss_pred eCcCCCCCccc
Confidence 99998876533
No 82
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.49 E-value=8.3e-08 Score=105.83 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=77.9
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc-cCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG-RVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~~~~~l~~l 502 (608)
.+|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..++++++|++|+|++|++++ .+|..+..+. .++.+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L 128 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTL 128 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-TCCEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-CccEE
Confidence 357899999999998888899999999999999999998888889999999999999999997 4677777765 89999
Q ss_pred eecCCCCCCCC
Q 007307 503 DLSGNKGLCGA 513 (608)
Q Consensus 503 ~l~~N~~~c~~ 513 (608)
++++|......
T Consensus 129 ~L~~n~~~~~~ 139 (549)
T 2z81_A 129 RIGNVETFSEI 139 (549)
T ss_dssp EEEESSSCCEE
T ss_pred ECCCCcccccc
Confidence 99999855544
No 83
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.49 E-value=8.4e-08 Score=100.40 Aligned_cols=85 Identities=26% Similarity=0.198 Sum_probs=53.8
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhh----hccCCC
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY----SIGVHG 499 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~----~~~~~l 499 (608)
.+|+.|+|++|+|++..+..|..|++|+.|+|++|++++..|..|.++++|+.|+|++|++++ +|..+. .+ ..|
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l-~~L 165 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKL-PKL 165 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----C-TTC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccC-CcC
Confidence 346667777777765555556667777777777777766666666777777777777777764 444432 23 256
Q ss_pred CeEeecCCCCC
Q 007307 500 GAFDLSGNKGL 510 (608)
Q Consensus 500 ~~l~l~~N~~~ 510 (608)
+.|++++|++.
T Consensus 166 ~~L~L~~N~l~ 176 (361)
T 2xot_A 166 MLLDLSSNKLK 176 (361)
T ss_dssp CEEECCSSCCC
T ss_pred CEEECCCCCCC
Confidence 66777776654
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.48 E-value=1.2e-07 Score=87.45 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=70.4
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCC-CCccccCCCCCcEEEcccccccccCc---hhhhhccCCC
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGS-IPDSLTSSSKLQLVLLNNNLLEGRVP---EELYSIGVHG 499 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~G~iP---~~l~~~~~~l 499 (608)
.+|+.|+|++|++++.+|..+..+++|+.|+|++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+. .+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L 149 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QL 149 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cC
Confidence 3578899999999988888888899999999999999853 23788999999999999999996544 3555554 78
Q ss_pred CeEeecCCCCC
Q 007307 500 GAFDLSGNKGL 510 (608)
Q Consensus 500 ~~l~l~~N~~~ 510 (608)
+.+++++|...
T Consensus 150 ~~L~l~~n~~~ 160 (168)
T 2ell_A 150 TYLDGYDREDQ 160 (168)
T ss_dssp CEETTEETTSC
T ss_pred cEecCCCCChh
Confidence 89999888743
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.47 E-value=6.1e-08 Score=107.28 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=64.9
Q ss_pred eEEEEEEcCCCCCC-CCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..+.++++|+.|+|++|++++..|..+..+. .++.+
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L 523 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT-SLQKI 523 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEE
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc-CCcEE
Confidence 34677777777776 56777777777777777777777777777777777777888877777776666565554 67777
Q ss_pred eecCCCCCCC
Q 007307 503 DLSGNKGLCG 512 (608)
Q Consensus 503 ~l~~N~~~c~ 512 (608)
++++|++.|.
T Consensus 524 ~l~~N~~~~~ 533 (570)
T 2z63_A 524 WLHTNPWDCS 533 (570)
T ss_dssp ECCSSCBCCC
T ss_pred EecCCcccCC
Confidence 7887777774
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.45 E-value=1e-07 Score=93.45 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=50.4
Q ss_pred EEEEEEcCCCC-CCCCCChhhcccccCCeecccC-CcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCC--
Q 007307 425 VISQIDLGSQG-LKGYISDKISLLSNLVNLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG-- 500 (608)
Q Consensus 425 ~l~~L~Ls~n~-l~g~ip~~~~~L~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~-- 500 (608)
+|+.|+|++|+ +++..+..|..+++|++|+|++ |++++..+..+.++++|+.|++++|++++ +|. +..+. .++
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~-~L~~L 132 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY-STDIF 132 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC-BCCSE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc-ccccc
Confidence 35667777775 6544444666777777777776 67765555566677777777777777765 555 44433 455
Q ss_pred -eEeecCC
Q 007307 501 -AFDLSGN 507 (608)
Q Consensus 501 -~l~l~~N 507 (608)
.+++++|
T Consensus 133 ~~L~l~~N 140 (239)
T 2xwt_C 133 FILEITDN 140 (239)
T ss_dssp EEEEEESC
T ss_pred cEEECCCC
Confidence 6667666
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.45 E-value=7.3e-08 Score=91.70 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccccc
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 483 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~ 483 (608)
|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..++++++|+.|+|++|+
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 3444444444444444444444444444444444444444444444444444444444
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.44 E-value=1.4e-07 Score=105.30 Aligned_cols=87 Identities=18% Similarity=0.047 Sum_probs=68.7
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..++.|+|++|.+++..|..|+.+++|++|+|++|++.+..|..|+++++|++|+|++|++++..|..+..+. .++.++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-ALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT-TCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc-cccEee
Confidence 3578888888888877788888888888888888888887788888888888888888888887777766654 666777
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|.+..
T Consensus 112 L~~n~i~~ 119 (606)
T 3t6q_A 112 FIQTGISS 119 (606)
T ss_dssp CTTSCCSC
T ss_pred ccccCccc
Confidence 76666543
No 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=9.3e-08 Score=89.22 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCch--hhhhccCCCCeEe
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE--ELYSIGVHGGAFD 503 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~--~l~~~~~~l~~l~ 503 (608)
|+.|+|++|.+++. ..++.+++|+.|+|++|++++..|..+..+++|+.|+|++|+++ .+|. .+..+. .++.++
T Consensus 44 L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~ 119 (176)
T 1a9n_A 44 FDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK-SLTYLC 119 (176)
T ss_dssp CSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT-TCCEEE
T ss_pred CCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCC-CCCEEE
Confidence 44455555554432 34444455555555555554322222244455555555555543 3333 333332 444455
Q ss_pred ecCCC
Q 007307 504 LSGNK 508 (608)
Q Consensus 504 l~~N~ 508 (608)
+++|+
T Consensus 120 l~~N~ 124 (176)
T 1a9n_A 120 ILRNP 124 (176)
T ss_dssp CCSSG
T ss_pred ecCCC
Confidence 55444
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.42 E-value=2.9e-07 Score=92.14 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=44.9
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc-cCchhhhhccCCCCeEee
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG-RVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~~~~~l~~l~l 504 (608)
|+.|+|++|.+++..+..+..+++|+.|++++|++.+..+..++++++|+.|++++|++++ .+|..+..+. .++.+++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~L 156 (276)
T 2z62_A 78 LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDL 156 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEEC
T ss_pred CCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEEC
Confidence 4555555555555444555555555555555555554444455555555555555555554 2455554443 5555555
Q ss_pred cCCCC
Q 007307 505 SGNKG 509 (608)
Q Consensus 505 ~~N~~ 509 (608)
++|++
T Consensus 157 s~N~l 161 (276)
T 2z62_A 157 SSNKI 161 (276)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 55543
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.42 E-value=6.3e-08 Score=99.15 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=77.0
Q ss_pred EEEEEEcCCCCCCCCCChhh--cccccCCeecccCCcCCCCCCccccCC-----CCCcEEEcccccccccCchhhhhccC
Q 007307 425 VISQIDLGSQGLKGYISDKI--SLLSNLVNLDLSDNQFTGSIPDSLTSS-----SKLQLVLLNNNLLEGRVPEELYSIGV 497 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~--~~L~~L~~L~Ls~N~l~G~iP~~l~~l-----~~L~~L~Ls~N~l~G~iP~~l~~~~~ 497 (608)
+|+.|+|++|+++|.+|..+ +.+++|++|+|++|++++. |..++.+ ++|++|+|++|++++..|..+..+.
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~- 173 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP- 173 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS-
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC-
Confidence 47899999999999999987 9999999999999999987 8888887 9999999999999988888887775
Q ss_pred CCCeEeecCCCCCC
Q 007307 498 HGGAFDLSGNKGLC 511 (608)
Q Consensus 498 ~l~~l~l~~N~~~c 511 (608)
.++.+++++|++.+
T Consensus 174 ~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 174 ALSTLDLSDNPELG 187 (312)
T ss_dssp SCCEEECCSCTTCH
T ss_pred CCCEEECCCCCcCc
Confidence 89999999998654
No 92
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.40 E-value=1.2e-07 Score=102.81 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=73.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.|+|++|.+++..+..|..+++|+.|+|++|++.+..|..+.++++|+.|+|++|++++..+..+..+. +++.+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l 327 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG-NLETLIL 327 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG-GCCEEEC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc-ccCEEEc
Confidence 477899999999977777889999999999999999988889999999999999999999975555555553 7889999
Q ss_pred cCCCCCCC
Q 007307 505 SGNKGLCG 512 (608)
Q Consensus 505 ~~N~~~c~ 512 (608)
++|++.|.
T Consensus 328 ~~N~l~c~ 335 (477)
T 2id5_A 328 DSNPLACD 335 (477)
T ss_dssp CSSCEECS
T ss_pred cCCCccCc
Confidence 99998883
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.39 E-value=2.1e-07 Score=88.40 Aligned_cols=86 Identities=19% Similarity=0.215 Sum_probs=73.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|++++|.++ .++.+..+++|+.|+|++|.+++..|..++.+++|+.|+|++|++++..|..+..+. .++.++
T Consensus 66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-~L~~L~ 142 (197)
T 4ezg_A 66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-KVNSID 142 (197)
T ss_dssp TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS-SCCEEE
T ss_pred CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC-CCCEEE
Confidence 35788999999665 345789999999999999999988888999999999999999999988888887775 899999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|++...
T Consensus 143 L~~n~~i~~ 151 (197)
T 4ezg_A 143 LSYNGAITD 151 (197)
T ss_dssp CCSCTBCCC
T ss_pred ccCCCCccc
Confidence 999874443
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.37 E-value=1.8e-07 Score=103.83 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=51.9
Q ss_pred cCcce-eecCCCCCceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccccccccc
Q 007307 409 AWEGI-TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR 487 (608)
Q Consensus 409 ~w~gv-~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~ 487 (608)
.|.|+ .|... +++.|+|++|+|++ +|..+. ++|+.|+|++|+|+ .+| ..+++|+.|+|++|+|++
T Consensus 49 ~~~~l~~C~~~------~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~- 114 (571)
T 3cvr_A 49 AVSLLKECLIN------QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST- 114 (571)
T ss_dssp HHHHHHHHHHT------TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-
T ss_pred hhhhccccccC------CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-
Confidence 57777 56532 35567777777765 665552 56677777777666 566 345666666666666665
Q ss_pred CchhhhhccCCCCeEeecCCCCCC
Q 007307 488 VPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 488 iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
+|. +.. +++.|++++|++..
T Consensus 115 ip~-l~~---~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 115 LPE-LPA---SLKHLDVDNNQLTM 134 (571)
T ss_dssp CCC-CCT---TCCEEECCSSCCSC
T ss_pred cch-hhc---CCCEEECCCCcCCC
Confidence 555 332 55666666666443
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.36 E-value=2.8e-07 Score=95.01 Aligned_cols=86 Identities=23% Similarity=0.203 Sum_probs=76.7
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.|+|++|.+++..+..+..+++|+.|+|++|++.+..|..+..+++|+.|+|++|+++ .+|..+..+. .++.+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l 271 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK-LLQVVYL 271 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT-TCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc-cCCEEEC
Confidence 4778999999999888888999999999999999999888888999999999999999999 7898887765 8999999
Q ss_pred cCCCCCCC
Q 007307 505 SGNKGLCG 512 (608)
Q Consensus 505 ~~N~~~c~ 512 (608)
++|++..-
T Consensus 272 ~~N~l~~~ 279 (332)
T 2ft3_A 272 HTNNITKV 279 (332)
T ss_dssp CSSCCCBC
T ss_pred CCCCCCcc
Confidence 99987653
No 96
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.35 E-value=3.6e-07 Score=94.06 Aligned_cols=85 Identities=25% Similarity=0.241 Sum_probs=75.4
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.|+|++|++++..|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|..+..+. .++.+++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~-~L~~L~l 270 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK-YIQVVYL 270 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS-SCCEEEC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC-CcCEEEC
Confidence 4788999999999888889999999999999999999888888999999999999999998 7888887764 7899999
Q ss_pred cCCCCCC
Q 007307 505 SGNKGLC 511 (608)
Q Consensus 505 ~~N~~~c 511 (608)
++|++..
T Consensus 271 ~~N~i~~ 277 (330)
T 1xku_A 271 HNNNISA 277 (330)
T ss_dssp CSSCCCC
T ss_pred CCCcCCc
Confidence 9998655
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.33 E-value=5.9e-07 Score=101.84 Aligned_cols=88 Identities=18% Similarity=0.153 Sum_probs=75.5
Q ss_pred eeEEEEEEcCCCCCCCCCCh-hhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhh-hccCCCC
Q 007307 423 AVVISQIDLGSQGLKGYISD-KISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY-SIGVHGG 500 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~-~~~~~l~ 500 (608)
..+|+.|+|++|+++ .+|. .|..+++|+.|+|++|++++..+..+.++++|+.|+|++|++++..|..+. .+ ..++
T Consensus 535 l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-~~L~ 612 (680)
T 1ziw_A 535 LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF-RNLT 612 (680)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHH-TTCS
T ss_pred CCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccc-cccC
Confidence 346889999999999 5665 589999999999999999966666789999999999999999987777666 44 4889
Q ss_pred eEeecCCCCCCC
Q 007307 501 AFDLSGNKGLCG 512 (608)
Q Consensus 501 ~l~l~~N~~~c~ 512 (608)
.+++++|++.|.
T Consensus 613 ~l~l~~N~~~c~ 624 (680)
T 1ziw_A 613 ELDMRFNPFDCT 624 (680)
T ss_dssp EEECTTCCCCBC
T ss_pred EEEccCCCcccC
Confidence 999999999994
No 98
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.29 E-value=7.6e-07 Score=99.59 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 486 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 486 (608)
+|+.|+|++|.+++..+..|+.+++|+.|+|++|.+++..|..++++++|+.|+|++|++++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 45566666666663333334566666666666666665555556666666666666666654
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.28 E-value=9.4e-07 Score=82.29 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=67.4
Q ss_pred EEEEEEcCCCCCCCCCChhhcccc-cCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLKGYISDKISLLS-NLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~-~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.++.|+|++|+++ .+|. +..+. +|+.|+|++|.+++. ..++.+++|+.|+|++|++++..|..+..+. .++.++
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP-DLTELI 94 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT-TCCEEE
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC-CCCEEE
Confidence 4789999999999 5654 66665 999999999999964 6889999999999999999965444446664 899999
Q ss_pred ecCCCCC
Q 007307 504 LSGNKGL 510 (608)
Q Consensus 504 l~~N~~~ 510 (608)
+++|.+.
T Consensus 95 L~~N~i~ 101 (176)
T 1a9n_A 95 LTNNSLV 101 (176)
T ss_dssp CCSCCCC
T ss_pred CCCCcCC
Confidence 9999864
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.27 E-value=1.4e-06 Score=86.79 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=65.1
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|++++|+++ .+| .+..+++|+.|+|++|++++. |. +.++++|+.|+|++|++++ +|.... ..++.++
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~~---~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIPS---ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCCC---SSCCEEE
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcccc---CcccEEE
Confidence 35788999999998 566 789999999999999999954 44 8999999999999999986 554322 4788999
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|.+..
T Consensus 113 L~~N~l~~ 120 (263)
T 1xeu_A 113 LDNNELRD 120 (263)
T ss_dssp CCSSCCSB
T ss_pred ccCCccCC
Confidence 99987654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.26 E-value=1.7e-06 Score=87.62 Aligned_cols=81 Identities=22% Similarity=0.228 Sum_probs=56.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++. ++ +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++ + +.+..+. .++.++
T Consensus 68 ~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~-~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLP-QLESLY 140 (291)
T ss_dssp TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCT-TCCEEE
T ss_pred CCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCC-CCCEEE
Confidence 3467788888888754 33 7778888888888888775 33 47778888888888888775 3 3455543 677788
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|.+..
T Consensus 141 l~~n~l~~ 148 (291)
T 1h6t_A 141 LGNNKITD 148 (291)
T ss_dssp CCSSCCCC
T ss_pred ccCCcCCc
Confidence 87776543
No 102
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.26 E-value=1.8e-06 Score=88.09 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|.+++ ++ .+..+++|+.|+|++|++++ +|. +..+++|+.|++++|++++..+ +..+. .++.|++
T Consensus 86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-~L~~L~l 158 (308)
T 1h6u_A 86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLT-NLQYLSI 158 (308)
T ss_dssp SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT-TCCEEEC
T ss_pred CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCC-CccEEEc
Confidence 45666666666664 22 46666666666666666664 332 6666666666666666664322 44433 5666666
Q ss_pred cCCCCC
Q 007307 505 SGNKGL 510 (608)
Q Consensus 505 ~~N~~~ 510 (608)
++|.+.
T Consensus 159 ~~n~l~ 164 (308)
T 1h6u_A 159 GNAQVS 164 (308)
T ss_dssp CSSCCC
T ss_pred cCCcCC
Confidence 666544
No 103
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.26 E-value=9.3e-07 Score=98.85 Aligned_cols=88 Identities=18% Similarity=0.164 Sum_probs=77.7
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..+|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..+..|+++++|+.|+|++|++++..|..+..+. .++.|
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L 176 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQNL 176 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-TCCEE
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC-cCcEE
Confidence 45689999999999998888899999999999999999955555679999999999999999998888887775 89999
Q ss_pred eecCCCCCC
Q 007307 503 DLSGNKGLC 511 (608)
Q Consensus 503 ~l~~N~~~c 511 (608)
++++|.+..
T Consensus 177 ~L~~N~l~~ 185 (597)
T 3oja_B 177 QLSSNRLTH 185 (597)
T ss_dssp ECTTSCCSB
T ss_pred ECcCCCCCC
Confidence 999998754
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.26 E-value=1.9e-07 Score=104.56 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|.|++. +.++.|++|+.|+|++|.|.+..| +..|++|+.|+|++|++++ +| .+..+. .|+.|++
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~-~L~~L~L 204 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLK-NLDVLEL 204 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCT-TCSEEEC
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCC-CCCEEEc
Confidence 467777888877754 567777788888888888776555 7777788888888887775 33 355553 6777777
Q ss_pred cCCCCCC
Q 007307 505 SGNKGLC 511 (608)
Q Consensus 505 ~~N~~~c 511 (608)
++|++..
T Consensus 205 ~~N~l~~ 211 (605)
T 1m9s_A 205 FSQECLN 211 (605)
T ss_dssp CSEEEEC
T ss_pred cCCcCcC
Confidence 7776543
No 105
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.25 E-value=1.5e-07 Score=101.65 Aligned_cols=82 Identities=15% Similarity=0.034 Sum_probs=48.9
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCC-------------cEEEcccccccccCch
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKL-------------QLVLLNNNLLEGRVPE 490 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L-------------~~L~Ls~N~l~G~iP~ 490 (608)
.+|+.|++++|++ |.+|.+|++|++|++|++++|.+.|.+|.+++++.+| +.|++++|++++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5689999999999 8999999999999999999999999999999998865 899999999986 454
Q ss_pred hhhhccCCCCeEeecCCCCCC
Q 007307 491 ELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 491 ~l~~~~~~l~~l~l~~N~~~c 511 (608)
. ...++.+++++|.+..
T Consensus 89 ~----~~~L~~L~l~~n~l~~ 105 (454)
T 1jl5_A 89 L----PPHLESLVASCNSLTE 105 (454)
T ss_dssp C----CTTCSEEECCSSCCSS
T ss_pred C----cCCCCEEEccCCcCCc
Confidence 2 2367788888887654
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.25 E-value=2.3e-07 Score=102.85 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccC-------CeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhc
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNL-------VNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 495 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L-------~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~ 495 (608)
+|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .||..+.++++|+.|+|++|+|+|.+|..+..+
T Consensus 181 ~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 181 SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3566777777777 5665 443 55 77777777776 567666667777777777777777777666554
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.25 E-value=1.8e-06 Score=96.59 Aligned_cols=76 Identities=26% Similarity=0.380 Sum_probs=36.7
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.|+|++|.+++ + +.+..|++|+.|+|++|.|++. ..+..|++|+.|+|++|++++..| +..+. .|+.|+|+
T Consensus 111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls 183 (605)
T 1m9s_A 111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLT-KLQNLYLS 183 (605)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCT-TCCEEECC
T ss_pred CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCC-CCCEEECc
Confidence 4445555555553 2 2355555555555555555532 344555555555555555554333 33332 44555555
Q ss_pred CCC
Q 007307 506 GNK 508 (608)
Q Consensus 506 ~N~ 508 (608)
+|+
T Consensus 184 ~N~ 186 (605)
T 1m9s_A 184 KNH 186 (605)
T ss_dssp SSC
T ss_pred CCC
Confidence 544
No 108
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.24 E-value=1.2e-06 Score=92.19 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCCCCCCChh-hcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc
Q 007307 425 VISQIDLGSQGLKGYISDK-ISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 486 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~-~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 486 (608)
+|+.|+|++|+++ .+|.. ++.+++|++|+|++|.+.+..|..+.++++|+.|++++|++++
T Consensus 118 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 118 LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 4566666666666 33333 4666666666666666665555556666666666666666664
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.22 E-value=9.2e-07 Score=98.03 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=60.6
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc-cCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG-RVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~~~~~l~~l 502 (608)
.+|+.|+|++|++++..|..|+.+++|++|+|++|+++ .+|.. .+++|+.|+|++|++++ .+|..+..+. +++.+
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L 151 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFL 151 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEE
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccC-cccEE
Confidence 35677777777777666777777777777777777777 66665 67777777777777776 4566777664 77888
Q ss_pred eecCCCCCC
Q 007307 503 DLSGNKGLC 511 (608)
Q Consensus 503 ~l~~N~~~c 511 (608)
++++|.+..
T Consensus 152 ~L~~n~l~~ 160 (562)
T 3a79_B 152 GLSAAKFRQ 160 (562)
T ss_dssp EEECSBCCT
T ss_pred ecCCCcccc
Confidence 888877543
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.22 E-value=7.6e-07 Score=96.26 Aligned_cols=55 Identities=20% Similarity=0.258 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccc
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 486 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 486 (608)
|+.|++++|++++. .++.+++|+.|+|++|++++ +| ++.+++|+.|++++|++++
T Consensus 193 L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 193 LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 44455555555432 24444555555555555544 33 4444555555555555544
No 111
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.22 E-value=6.2e-07 Score=99.14 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=79.8
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCC-CCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFT-GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~-G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
.+|+.|++++|.+.+.+|..+..+++|+.|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..+..+. +++.+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc-CCCEE
Confidence 45789999999999989999999999999999999998 68999999999999999999999998898888775 89999
Q ss_pred eecCCCCCCCCC
Q 007307 503 DLSGNKGLCGAP 514 (608)
Q Consensus 503 ~l~~N~~~c~~p 514 (608)
++++|++..-.+
T Consensus 500 ~l~~n~l~~~~~ 511 (570)
T 2z63_A 500 NMASNQLKSVPD 511 (570)
T ss_dssp ECCSSCCSCCCT
T ss_pred eCCCCcCCCCCH
Confidence 999998766433
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.22 E-value=7.5e-07 Score=90.90 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCCCCCCChhhccc---ccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 425 VISQIDLGSQGLKGYISDKISLL---SNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L---~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
+|+.|+|++|++++.+|+.+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++. |. +..+ +.++.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l-~~L~~ 298 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDEL-PEVDN 298 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSC-CCCSC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhC-CCccE
Confidence 45666677777766666666555 46667777777666 5666553 5666777777776652 22 2222 25666
Q ss_pred EeecCCCCC
Q 007307 502 FDLSGNKGL 510 (608)
Q Consensus 502 l~l~~N~~~ 510 (608)
+++++|++.
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 666666653
No 113
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.20 E-value=1.7e-06 Score=91.21 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=75.8
Q ss_pred eeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCcc-ccCCCCCcEEEcccccccccCchhhhhccCCCCe
Q 007307 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDS-LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGA 501 (608)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~ 501 (608)
..+|+.|+|++|++++..|..++.+++|+.|+|++|.++ .+|.. +.++++|+.|++++|++++..|..+..+. .++.
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~ 169 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-SLQN 169 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-TCCE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCC-CCCE
Confidence 456899999999999888888999999999999999999 55554 68999999999999999987777777665 8999
Q ss_pred EeecCCCCCC
Q 007307 502 FDLSGNKGLC 511 (608)
Q Consensus 502 l~l~~N~~~c 511 (608)
+++++|.+..
T Consensus 170 L~l~~n~l~~ 179 (390)
T 3o6n_A 170 LQLSSNRLTH 179 (390)
T ss_dssp EECCSSCCSB
T ss_pred EECCCCcCCc
Confidence 9999998654
No 114
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.19 E-value=8.6e-07 Score=92.18 Aligned_cols=104 Identities=14% Similarity=0.066 Sum_probs=82.2
Q ss_pred CccCcceeecCCCCC-----ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCc-cccCCCCCcE-EEc
Q 007307 407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPD-SLTSSSKLQL-VLL 479 (608)
Q Consensus 407 ~~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~-L~L 479 (608)
.|.|..|.|...+.. -+..++.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|. .|.++++|+. +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 378899999754311 124688999999999944445699999999999999999888875 6789988775 677
Q ss_pred ccccccccCchhhhhccCCCCeEeecCCCCCC
Q 007307 480 NNNLLEGRVPEELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 480 s~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c 511 (608)
++|++++..|..+..+. +|+.+++++|++..
T Consensus 88 ~~N~l~~l~~~~f~~l~-~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLP-NLQYLLISNTGIKH 118 (350)
T ss_dssp EETTCCEECTTSBCCCT-TCCEEEEEEECCSS
T ss_pred cCCcccccCchhhhhcc-cccccccccccccc
Confidence 78999977677776665 89999999998654
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.18 E-value=4.1e-06 Score=90.52 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=38.8
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
+|+.|+|++|++++ +| ++.+++|++|+|++|++++. | ++++++|++|++++|++++ +| +..+. .++.+++
T Consensus 65 ~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~-~L~~L~l 134 (457)
T 3bz5_A 65 GLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNP-LLTYLNC 134 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCT-TCCEEEC
T ss_pred CCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCC-cCCEEEC
Confidence 34555555555554 22 55555555555555555542 2 5555555555555555554 33 33332 4555555
Q ss_pred cCCCCC
Q 007307 505 SGNKGL 510 (608)
Q Consensus 505 ~~N~~~ 510 (608)
++|++.
T Consensus 135 ~~N~l~ 140 (457)
T 3bz5_A 135 ARNTLT 140 (457)
T ss_dssp TTSCCS
T ss_pred CCCccc
Confidence 555543
No 116
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.15 E-value=2.1e-06 Score=93.56 Aligned_cols=83 Identities=19% Similarity=0.098 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCCCCCCCChhhc-ccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKIS-LLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. | .+..+++|+.|+|++|++++. |..+..+. .++.+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-~L~~L 219 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAA-GVTWI 219 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGT-TCSEE
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCC-CccEE
Confidence 3466777777777766666665 566666666666666644 2 223466666666666666653 33344443 55666
Q ss_pred eecCCCCC
Q 007307 503 DLSGNKGL 510 (608)
Q Consensus 503 ~l~~N~~~ 510 (608)
++++|.+.
T Consensus 220 ~Ls~N~l~ 227 (487)
T 3oja_A 220 SLRNNKLV 227 (487)
T ss_dssp ECTTSCCC
T ss_pred EecCCcCc
Confidence 66666544
No 117
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.11 E-value=1e-06 Score=90.24 Aligned_cols=82 Identities=20% Similarity=0.116 Sum_probs=40.7
Q ss_pred EEEEEEcCCCCCCCCCChhhc-ccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLKGYISDKIS-LLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.|+.|+|++|.+++..+..+. .+++|+.|+|++|.+++. |. ...+++|+.|+|++|++++ +|..+..+. .++.++
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~-~L~~L~ 220 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAA-GVTWIS 220 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGT-TCSEEE
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccC-cccEEE
Confidence 355555555555554444442 455555555555555532 21 2235555555555555553 333344432 455555
Q ss_pred ecCCCCC
Q 007307 504 LSGNKGL 510 (608)
Q Consensus 504 l~~N~~~ 510 (608)
+++|++.
T Consensus 221 L~~N~l~ 227 (317)
T 3o53_A 221 LRNNKLV 227 (317)
T ss_dssp CTTSCCC
T ss_pred CcCCccc
Confidence 5555543
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.06 E-value=4.8e-06 Score=89.98 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=40.7
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.|++++|.+++. ++ +..+++|+.|+|++|++.+..| ++.+++|+.|+|++|++++..| +..+. .++.++++
T Consensus 267 L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~l~ 339 (466)
T 1o6v_A 267 LTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFY 339 (466)
T ss_dssp CSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT-TCCEEECC
T ss_pred CCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc-cCCEeECC
Confidence 45555555555542 22 5555555555555555554322 4555555566665555555444 23332 55555555
Q ss_pred CCCCC
Q 007307 506 GNKGL 510 (608)
Q Consensus 506 ~N~~~ 510 (608)
+|++.
T Consensus 340 ~n~l~ 344 (466)
T 1o6v_A 340 NNKVS 344 (466)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 55443
No 119
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.06 E-value=2.1e-06 Score=88.74 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=38.3
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.|++++|.+++ + +.+..+++|+.|++++|.+++. +.+..+++|+.|++++|++++..|..+..+. .++.++++
T Consensus 245 L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~ 319 (347)
T 4fmz_A 245 LTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLS 319 (347)
T ss_dssp CCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT-TCSEEECC
T ss_pred CCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc-cCCEEEcc
Confidence 4445555555543 2 2344455555555555555432 2344455555555555555544444444432 44555555
Q ss_pred CCCCCC
Q 007307 506 GNKGLC 511 (608)
Q Consensus 506 ~N~~~c 511 (608)
+|++.+
T Consensus 320 ~n~l~~ 325 (347)
T 4fmz_A 320 QNHITD 325 (347)
T ss_dssp SSSCCC
T ss_pred CCcccc
Confidence 554433
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.04 E-value=2.3e-07 Score=88.29 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.|+|++|++++ +| .+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+. .++.+++
T Consensus 49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~-~L~~L~l 122 (198)
T 1ds9_A 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV-NLRVLYM 122 (198)
T ss_dssp TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH-HSSEEEE
T ss_pred CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC-CCCEEEC
Confidence 56788888888886 66 7888888888888888887 677777777888888888888886 55 455554 6778888
Q ss_pred cCCCCC
Q 007307 505 SGNKGL 510 (608)
Q Consensus 505 ~~N~~~ 510 (608)
++|++.
T Consensus 123 ~~N~i~ 128 (198)
T 1ds9_A 123 SNNKIT 128 (198)
T ss_dssp SEEECC
T ss_pred CCCcCC
Confidence 887754
No 121
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.03 E-value=5.6e-06 Score=83.74 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=63.2
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++. +.++.+++|+.|+|++|++++..| +..+++|+.|+|++|++++ +|. +..+. .++.++
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~-~L~~L~ 206 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLK-NLDVLE 206 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCT-TCSEEE
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCC-CCCEEE
Confidence 4578888888888864 578888888888888888886544 8888888888888888885 454 55554 788888
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.+
T Consensus 207 l~~n~i~~ 214 (291)
T 1h6t_A 207 LFSQECLN 214 (291)
T ss_dssp EEEEEEEC
T ss_pred CcCCcccC
Confidence 88887655
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.03 E-value=2.5e-06 Score=84.99 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.|+|++|++++ ++ .+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++. ..+..+. .++.+++
T Consensus 107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~-~L~~L~l 179 (263)
T 1xeu_A 107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLK-KVNWIDL 179 (263)
T ss_dssp SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCC-CCCEEEE
T ss_pred cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCC-CCCEEeC
Confidence 47889999999996 44 69999999999999999985 44 688999999999999999976 4555554 7889999
Q ss_pred cCCCCCCC
Q 007307 505 SGNKGLCG 512 (608)
Q Consensus 505 ~~N~~~c~ 512 (608)
++|++.|.
T Consensus 180 ~~N~~~~~ 187 (263)
T 1xeu_A 180 TGQKCVNE 187 (263)
T ss_dssp EEEEEECC
T ss_pred CCCcccCC
Confidence 99987664
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.00 E-value=2.3e-07 Score=88.24 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCc-hhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP-EELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP-~~l~~~~~~l~~l~ 503 (608)
+|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.-+ ..+..+. .++.++
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~ 146 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLL 146 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEE
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEE
Confidence 4556666666666 556556666666666666666664 34 45566666666666666653211 2333332 556666
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.|
T Consensus 147 l~~N~l~~ 154 (198)
T 1ds9_A 147 LAGNPLYN 154 (198)
T ss_dssp ECSCHHHH
T ss_pred ecCCcccc
Confidence 66665443
No 124
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.95 E-value=8.6e-06 Score=84.02 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=64.3
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|++++|.+++. +.+..+++|+.|+|++|.+.+..|..++++++|+.|++++|++++..| +..+. .++.++
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~ 339 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS-KMDSAD 339 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT-TCSEES
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh-ccceee
Confidence 4578888999888864 468888889999999998888888888888899999999998887666 55554 788888
Q ss_pred ecCCCC
Q 007307 504 LSGNKG 509 (608)
Q Consensus 504 l~~N~~ 509 (608)
+++|++
T Consensus 340 l~~N~i 345 (347)
T 4fmz_A 340 FANQVI 345 (347)
T ss_dssp SSCC--
T ss_pred hhhhcc
Confidence 888875
No 125
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.95 E-value=8.6e-06 Score=83.03 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=36.4
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeec
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 505 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~ 505 (608)
|+.|+|++|.+++ +++ +..+++|+.|+|++|++++. |. +..+++|+.|+|++|++++..| +..+. .++.++++
T Consensus 153 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~-~L~~L~l~ 225 (308)
T 1h6u_A 153 LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP--LANTS-NLFIVTLT 225 (308)
T ss_dssp CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCT-TCCEEEEE
T ss_pred ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc--ccCCC-CCCEEEcc
Confidence 4455555555553 222 45555555555555555432 21 4455555555555555553322 33332 44555555
Q ss_pred CCCC
Q 007307 506 GNKG 509 (608)
Q Consensus 506 ~N~~ 509 (608)
+|++
T Consensus 226 ~N~i 229 (308)
T 1h6u_A 226 NQTI 229 (308)
T ss_dssp EEEE
T ss_pred CCee
Confidence 5554
No 126
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.93 E-value=1e-05 Score=82.75 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=68.8
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
..|+.|+|++|.+++. + ....+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+. .++.++
T Consensus 169 ~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~-~L~~L~ 243 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ-NLEHFD 243 (317)
T ss_dssp TTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT-TCCEEE
T ss_pred CcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC-CCCEEE
Confidence 4578999999999854 3 34458999999999999994 5666889999999999999999 5787776654 789999
Q ss_pred ecCCCCCCC
Q 007307 504 LSGNKGLCG 512 (608)
Q Consensus 504 l~~N~~~c~ 512 (608)
+++|++.|+
T Consensus 244 l~~N~~~~~ 252 (317)
T 3o53_A 244 LRGNGFHCG 252 (317)
T ss_dssp CTTCCCBHH
T ss_pred ccCCCccCc
Confidence 999998873
No 127
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=7.9e-06 Score=81.46 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCCCC--CCChhhcccccCCeecccCCcCCCCCCccccCCC--CCcEEEcccccccccCchh------hhh
Q 007307 425 VISQIDLGSQGLKG--YISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSS--KLQLVLLNNNLLEGRVPEE------LYS 494 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g--~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L~Ls~N~l~G~iP~~------l~~ 494 (608)
.|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|.+. ..+..+. +|+.|+|++|.+++.+|.. +..
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 57899999999998 6677888999999999999999965 3344444 8999999999999988732 222
Q ss_pred ccCCCCeEe
Q 007307 495 IGVHGGAFD 503 (608)
Q Consensus 495 ~~~~l~~l~ 503 (608)
..++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 234666664
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.90 E-value=3.3e-06 Score=87.75 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=64.9
Q ss_pred EEEEEEcCCCCCCCCCCh-hhcccccCCe-ecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 425 VISQIDLGSQGLKGYISD-KISLLSNLVN-LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~-~~~~L~~L~~-L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
+|+.|+|++|++.+.+|. .|.+|++|+. +.++.|++....|..|..+++|+.|++++|++++..+..+.... .+..+
T Consensus 55 ~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l 133 (350)
T 4ay9_X 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-QKVLL 133 (350)
T ss_dssp TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-SCEEE
T ss_pred CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccc-hhhhh
Confidence 478899999999877775 4788888775 67778999977788899999999999999999865554443332 45567
Q ss_pred eecCCCCCC
Q 007307 503 DLSGNKGLC 511 (608)
Q Consensus 503 ~l~~N~~~c 511 (608)
++.++....
T Consensus 134 ~l~~~~~i~ 142 (350)
T 4ay9_X 134 DIQDNINIH 142 (350)
T ss_dssp EEESCTTCC
T ss_pred hhccccccc
Confidence 776654333
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.85 E-value=2.3e-06 Score=87.92 Aligned_cols=83 Identities=20% Similarity=0.195 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCCCCC-CChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc-ccccc-CchhhhhccCCCC
Q 007307 424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN-LLEGR-VPEELYSIGVHGG 500 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~-ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N-~l~G~-iP~~l~~~~~~l~ 500 (608)
.+|+.|+|++|.+++. +|..+..+++|++|+|++|.+++.+|..++++++|+.|+|++| .+++. +|..+..+. .++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-RLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-TCC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-CCC
Confidence 3466677777776654 6666667777777777777776666666667777777777776 56652 455455543 666
Q ss_pred eEeecCC
Q 007307 501 AFDLSGN 507 (608)
Q Consensus 501 ~l~l~~N 507 (608)
.|++++|
T Consensus 172 ~L~l~~~ 178 (336)
T 2ast_B 172 ELNLSWC 178 (336)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 7777666
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.85 E-value=1.8e-06 Score=90.87 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=68.5
Q ss_pred eEEEEEEcCCCCCC----CCCChhhcccccCCeecccCCcCCCC----CCccc--cCCCCCcEEEcccccccc----cCc
Q 007307 424 VVISQIDLGSQGLK----GYISDKISLLSNLVNLDLSDNQFTGS----IPDSL--TSSSKLQLVLLNNNLLEG----RVP 489 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~----g~ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l--~~l~~L~~L~Ls~N~l~G----~iP 489 (608)
.+|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+ +.+++|+.|+|++|++++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 35788899999886 67788888888999999999988865 56666 348889999999999887 588
Q ss_pred hhhhhccCCCCeEeecCCCCCC
Q 007307 490 EELYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 490 ~~l~~~~~~l~~l~l~~N~~~c 511 (608)
..+....+.++.+++++|++.+
T Consensus 296 ~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 296 TVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHhcCCCceEEEccCCcCCc
Confidence 7774322478888988887544
No 131
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.83 E-value=9.5e-06 Score=87.62 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=62.0
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.+|+.|+|++|++++..| +..+++|+.|++++|.+++. +.+.++++|+.|++++|++++..| +..+. .++.++
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~ 381 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLG 381 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT-TCCEEE
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC-CCCEEe
Confidence 356778888888886655 77888888888888888864 467888888888888888887776 55554 778888
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+++|++.+
T Consensus 382 l~~n~~~~ 389 (466)
T 1o6v_A 382 LNDQAWTN 389 (466)
T ss_dssp CCCEEEEC
T ss_pred ccCCcccC
Confidence 88887665
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.82 E-value=2.2e-05 Score=87.90 Aligned_cols=66 Identities=29% Similarity=0.349 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhc
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 495 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~ 495 (608)
+|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|.++|.+|..+..+
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 3555666666665 3444 4455666666666666 556556666666666666666666555555443
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.80 E-value=4.2e-05 Score=85.66 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=8.9
Q ss_pred ceEEEecccccccCCC
Q 007307 586 SLMLLEMESQHAKGLP 601 (608)
Q Consensus 586 ~~~~~~~~~n~~~~~~ 601 (608)
++..+++++|+++++|
T Consensus 222 ~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP 237 (622)
T ss_dssp TCCEEECCSSCCSCCC
T ss_pred CCCEEEccCCccCcCC
Confidence 3555555555555555
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.74 E-value=7.7e-06 Score=85.31 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=69.2
Q ss_pred EEEEEEcCCCCCCCCCChhhccc-----ccCCeecccCCcCCCCCCccccC----C-CCCcEEEcccccccccCchhhhh
Q 007307 425 VISQIDLGSQGLKGYISDKISLL-----SNLVNLDLSDNQFTGSIPDSLTS----S-SKLQLVLLNNNLLEGRVPEELYS 494 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L-----~~L~~L~Ls~N~l~G~iP~~l~~----l-~~L~~L~Ls~N~l~G~iP~~l~~ 494 (608)
+|+.|+|++|++++..+..+..+ ++|+.|+|++|.+++..+..+.. + ++|+.|+|++|++++..+..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 57889999999998878888876 89999999999998777765443 4 88999999999998777666554
Q ss_pred c----cCCCCeEeecCCCCC
Q 007307 495 I----GVHGGAFDLSGNKGL 510 (608)
Q Consensus 495 ~----~~~l~~l~l~~N~~~ 510 (608)
. ...++.|++++|.+.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCceeEEEccCCcCC
Confidence 3 347889999998866
No 135
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.67 E-value=9.3e-06 Score=85.32 Aligned_cols=86 Identities=24% Similarity=0.344 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCCC--C---CCChhhcccccCCeecccCCcCC----CCCCccccCCCCCcEEEccccccccc----Cchh
Q 007307 425 VISQIDLGSQGLK--G---YISDKISLLSNLVNLDLSDNQFT----GSIPDSLTSSSKLQLVLLNNNLLEGR----VPEE 491 (608)
Q Consensus 425 ~l~~L~Ls~n~l~--g---~ip~~~~~L~~L~~L~Ls~N~l~----G~iP~~l~~l~~L~~L~Ls~N~l~G~----iP~~ 491 (608)
.|+.|+|++|+++ | .+|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 4566777777666 2 23335666777777777777765 55666666777777777777777655 3444
Q ss_pred hhh--ccCCCCeEeecCCCCCC
Q 007307 492 LYS--IGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 492 l~~--~~~~l~~l~l~~N~~~c 511 (608)
+.. + ..++.|++++|.+..
T Consensus 268 l~~~~~-~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 268 FSKLEN-IGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHTCSS-CCCCEEECCSSCCBH
T ss_pred HhhccC-CCeEEEECcCCcCCH
Confidence 322 2 256677777666443
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.66 E-value=8.7e-06 Score=83.53 Aligned_cols=83 Identities=18% Similarity=0.111 Sum_probs=73.1
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCC-CCccccCCCCCcEEEcccccccccCchhhhhccCCCCeE
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGS-IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 502 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l 502 (608)
..++.|++++|.+.+.++. +..+++|++|+|++|.+++. +|..+..+++|+.|+|++|++++..|..+..+. .++.|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~-~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT-TCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC-CCCEE
Confidence 3578899999999977665 66899999999999999876 888899999999999999999998998888764 89999
Q ss_pred eecCCC
Q 007307 503 DLSGNK 508 (608)
Q Consensus 503 ~l~~N~ 508 (608)
++++|.
T Consensus 148 ~L~~~~ 153 (336)
T 2ast_B 148 NLSGCS 153 (336)
T ss_dssp ECTTCB
T ss_pred ECCCCC
Confidence 999984
No 137
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.64 E-value=2.4e-05 Score=81.48 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=74.0
Q ss_pred EEEEEEcCCCCCCCCCC----hhhcccc-cCCeecccCCcCCCCCCccccCC-----CCCcEEEcccccccccCchhhhh
Q 007307 425 VISQIDLGSQGLKGYIS----DKISLLS-NLVNLDLSDNQFTGSIPDSLTSS-----SKLQLVLLNNNLLEGRVPEELYS 494 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip----~~~~~L~-~L~~L~Ls~N~l~G~iP~~l~~l-----~~L~~L~Ls~N~l~G~iP~~l~~ 494 (608)
.|+.|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+..+ ++|+.|+|++|++++..+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48899999999997666 6788888 89999999999998888877775 99999999999999888876655
Q ss_pred c----cCCCCeEeecCCCCCC
Q 007307 495 I----GVHGGAFDLSGNKGLC 511 (608)
Q Consensus 495 ~----~~~l~~l~l~~N~~~c 511 (608)
. ...++.|++++|.+..
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGG
T ss_pred HHHhCCCCccEEECcCCcCCc
Confidence 3 1479999999998654
No 138
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=1.4e-05 Score=79.71 Aligned_cols=63 Identities=24% Similarity=0.348 Sum_probs=52.5
Q ss_pred cccccCCeecccCCcCCC--CCCccccCCCCCcEEEcccccccccCchhhhhcc-CCCCeEeecCCCC
Q 007307 445 SLLSNLVNLDLSDNQFTG--SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG-VHGGAFDLSGNKG 509 (608)
Q Consensus 445 ~~L~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~-~~l~~l~l~~N~~ 509 (608)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. ..|+.|++++|++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC
Confidence 568999999999999998 6778888999999999999999975 3343332 1688999999994
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.39 E-value=2e-05 Score=84.46 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCCCCC----CChhhcccccCCeecccCCcCCCCCCccccC-----CCCCcEEEcccccccc----cCchh
Q 007307 425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLDLSDNQFTGSIPDSLTS-----SSKLQLVLLNNNLLEG----RVPEE 491 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~Ls~N~l~G----~iP~~ 491 (608)
+|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+.. +++|+.|+|++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 456677777776654 4555566677777777777766544443332 5567777777777765 56666
Q ss_pred hhhccCCCCeEeecCCCC
Q 007307 492 LYSIGVHGGAFDLSGNKG 509 (608)
Q Consensus 492 l~~~~~~l~~l~l~~N~~ 509 (608)
+..+. .++.+++++|++
T Consensus 394 l~~~~-~L~~L~l~~N~i 410 (461)
T 1z7x_W 394 LLANH-SLRELDLSNNCL 410 (461)
T ss_dssp HHHCC-CCCEEECCSSSC
T ss_pred HHhCC-CccEEECCCCCC
Confidence 65543 667777777654
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.08 E-value=9.9e-05 Score=79.03 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=49.6
Q ss_pred EEEEEEcCCCCCCC----CCChhhcccccCCeecccCCcCCCCCCccc-cCCC----CCcEEEcccccccc----cCchh
Q 007307 425 VISQIDLGSQGLKG----YISDKISLLSNLVNLDLSDNQFTGSIPDSL-TSSS----KLQLVLLNNNLLEG----RVPEE 491 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g----~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l-~~l~----~L~~L~Ls~N~l~G----~iP~~ 491 (608)
+++.|+|++|+++. .++..+..+++|++|+|++|.+....+..+ ..++ +|+.|+|++|+++. .+|..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 35666666666663 244556666777777777776654333222 2233 57777777777663 44555
Q ss_pred hhhccCCCCeEeecCCCC
Q 007307 492 LYSIGVHGGAFDLSGNKG 509 (608)
Q Consensus 492 l~~~~~~l~~l~l~~N~~ 509 (608)
+..+. .++.+++++|.+
T Consensus 109 l~~~~-~L~~L~Ls~n~i 125 (461)
T 1z7x_W 109 LRTLP-TLQELHLSDNLL 125 (461)
T ss_dssp TTSCT-TCCEEECCSSBC
T ss_pred HccCC-ceeEEECCCCcC
Confidence 55543 667777777664
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.94 E-value=0.00011 Score=77.15 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=62.9
Q ss_pred EEEEEEcCCCCCCC----CCChhhcccccCCeecccCCcCCCC----CCccccCCCCCcEEEcccccccccCc----hhh
Q 007307 425 VISQIDLGSQGLKG----YISDKISLLSNLVNLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEGRVP----EEL 492 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g----~ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~G~iP----~~l 492 (608)
.|+.|+|++|.++. .++..+..+++|++|+|++|.+... ++..+..+++|+.|+|++|+++..-. ..+
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 36789999999864 2445567788999999999998742 35667778899999999999975432 233
Q ss_pred hhccCCCCeEeecCCCCC
Q 007307 493 YSIGVHGGAFDLSGNKGL 510 (608)
Q Consensus 493 ~~~~~~l~~l~l~~N~~~ 510 (608)
... ..++.+++++|++.
T Consensus 236 ~~~-~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 236 REH-PSLELLHLYFNELS 252 (372)
T ss_dssp HHC-SSCCEEECTTSSCC
T ss_pred HhC-CCCCEEeccCCCCC
Confidence 333 37889999999864
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.60 E-value=0.00048 Score=72.11 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCCCCCCChhhc-----ccccCCeecccCCcCCC----CCCccccCCCCCcEEEcccccccccC----chh
Q 007307 425 VISQIDLGSQGLKGYISDKIS-----LLSNLVNLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLLEGRV----PEE 491 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~-----~L~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G~i----P~~ 491 (608)
+++.|+|++|.++..-...++ ..+.|+.|+|++|.++. .++..+..+++|++|+|++|+++..- +..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 478999999998744333342 35789999999999864 35556678899999999999987532 333
Q ss_pred hhhccCCCCeEeecCCCCC
Q 007307 492 LYSIGVHGGAFDLSGNKGL 510 (608)
Q Consensus 492 l~~~~~~l~~l~l~~N~~~ 510 (608)
+.... .++.|++++|.+.
T Consensus 207 L~~~~-~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 207 LDRNR-QLQELNVAYNGAG 224 (372)
T ss_dssp GGGCS-CCCEEECCSSCCC
T ss_pred HhcCC-CcCeEECCCCCCC
Confidence 44433 7899999998864
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.35 E-value=0.00054 Score=75.77 Aligned_cols=86 Identities=10% Similarity=0.006 Sum_probs=62.4
Q ss_pred EEEEEEcCCC--CCCCCCChhhcc-cccCCeecccCCcCCC-CCCccccCCCCCcEEEcccccccccCchhh-hhccCCC
Q 007307 425 VISQIDLGSQ--GLKGYISDKISL-LSNLVNLDLSDNQFTG-SIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHG 499 (608)
Q Consensus 425 ~l~~L~Ls~n--~l~g~ip~~~~~-L~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l-~~~~~~l 499 (608)
+|+.|+|+.+ .+++.....++. +++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++.....+ ..+ +++
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l-~~L 515 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL-PSL 515 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC-SSC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc-Ccc
Confidence 4677888643 366555555554 7889999999999886 456667888999999999999876644433 344 488
Q ss_pred CeEeecCCCCCC
Q 007307 500 GAFDLSGNKGLC 511 (608)
Q Consensus 500 ~~l~l~~N~~~c 511 (608)
+.+++++|++..
T Consensus 516 ~~L~ls~n~it~ 527 (592)
T 3ogk_B 516 RYLWVQGYRASM 527 (592)
T ss_dssp CEEEEESCBCCT
T ss_pred CeeECcCCcCCH
Confidence 999999988543
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.34 E-value=0.0053 Score=53.87 Aligned_cols=56 Identities=23% Similarity=0.327 Sum_probs=37.0
Q ss_pred EEEcCCCCCC-CCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEccccccc
Q 007307 428 QIDLGSQGLK-GYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 428 ~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 485 (608)
.++.++++|+ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5778888886 45664432 45777788888877444455666777777777777654
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.21 E-value=0.001 Score=62.27 Aligned_cols=83 Identities=14% Similarity=0.225 Sum_probs=52.7
Q ss_pred EEEEEcCCCCCCCC----CChhhcccccCCeecccCCcCCCC----CCccccCCCCCcEEEc--ccccccccCchhhhhc
Q 007307 426 ISQIDLGSQGLKGY----ISDKISLLSNLVNLDLSDNQFTGS----IPDSLTSSSKLQLVLL--NNNLLEGRVPEELYSI 495 (608)
Q Consensus 426 l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~L--s~N~l~G~iP~~l~~~ 495 (608)
|+.|+|++|.+... +...+...+.|++|+|++|.+... +...+...++|+.|+| ++|.++..--..+...
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 56788888887632 333445557788888888887643 4556677778888888 7788765432222221
Q ss_pred ---cCCCCeEeecCCC
Q 007307 496 ---GVHGGAFDLSGNK 508 (608)
Q Consensus 496 ---~~~l~~l~l~~N~ 508 (608)
...++.+++++|.
T Consensus 147 L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHCSSCCEEECCCSS
T ss_pred HHhCCCcCEEeccCCC
Confidence 1367777777654
No 146
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.98 E-value=0.0087 Score=52.46 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=44.4
Q ss_pred CeecccCCcCC-CCCCccccCCCCCcEEEcccccccccCchh-hhhccCCCCeEeecCCCCCC
Q 007307 451 VNLDLSDNQFT-GSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSGNKGLC 511 (608)
Q Consensus 451 ~~L~Ls~N~l~-G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~-l~~~~~~l~~l~l~~N~~~c 511 (608)
..++.+++.|+ ..+|..+. .+|+.|+|++|+|+. +|.. +..+ ..++.++|.+|++.|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~-l~~~~f~~l-~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA-LPPGLLDAL-PALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS-CCTTTGGGC-TTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc-cChhhhhhc-cccCEEEecCCCeec
Confidence 47889999997 57776543 368999999999995 5554 4444 478999999999999
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.96 E-value=0.0013 Score=61.52 Aligned_cols=84 Identities=10% Similarity=0.163 Sum_probs=61.0
Q ss_pred EEEEEEcCCC-CCCCC----CChhhcccccCCeecccCCcCCCC----CCccccCCCCCcEEEccccccccc----Cchh
Q 007307 425 VISQIDLGSQ-GLKGY----ISDKISLLSNLVNLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEGR----VPEE 491 (608)
Q Consensus 425 ~l~~L~Ls~n-~l~g~----ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~G~----iP~~ 491 (608)
.|+.|+|++| .+... +...+...++|++|+|++|.+... +...+...++|+.|+|++|+++.. +...
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 3688999999 87632 344566678999999999999732 344566678999999999999854 2233
Q ss_pred hhhccCCCCeEee--cCCCC
Q 007307 492 LYSIGVHGGAFDL--SGNKG 509 (608)
Q Consensus 492 l~~~~~~l~~l~l--~~N~~ 509 (608)
+... ..++.|++ ++|.+
T Consensus 117 L~~n-~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 117 LQSN-TSLIELRIDNQSQPL 135 (185)
T ss_dssp GGGC-SSCCEEECCCCSSCC
T ss_pred HHhC-CCceEEEecCCCCCC
Confidence 3332 36889999 66764
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.83 E-value=0.00096 Score=73.70 Aligned_cols=82 Identities=9% Similarity=-0.019 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCCCCCChhhcc-cccCCeecccCCcCCCCCCccc-cCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 426 ISQIDLGSQGLKGYISDKISL-LSNLVNLDLSDNQFTGSIPDSL-TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~-L~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
|+.|+|++ .+++.....++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+..+.....+++.++
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 44444433 333333333333 4445555555555443333222 33455555555555553332222222112444555
Q ss_pred ecCCC
Q 007307 504 LSGNK 508 (608)
Q Consensus 504 l~~N~ 508 (608)
+++|+
T Consensus 513 l~~~~ 517 (594)
T 2p1m_B 513 MSSCS 517 (594)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 55443
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.77 E-value=0.0015 Score=72.22 Aligned_cols=78 Identities=9% Similarity=0.039 Sum_probs=37.9
Q ss_pred EEEEEcCCCCCCCC----CChhhcccccCCeecccCCcCC----CCCCccccCCCCCcEEEcccccccccCchhhhhccC
Q 007307 426 ISQIDLGSQGLKGY----ISDKISLLSNLVNLDLSDNQFT----GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGV 497 (608)
Q Consensus 426 l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~----G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~ 497 (608)
|+.|+|++|.+++. ++..+..+++|+.|+|++|.++ +.++..+.++++|+.|+|++|.+.+ +|..+..+.
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~- 243 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAA- 243 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCT-
T ss_pred CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhh-
Confidence 44555555555443 2333344555555555555554 2233333445555555555555554 444444432
Q ss_pred CCCeEeec
Q 007307 498 HGGAFDLS 505 (608)
Q Consensus 498 ~l~~l~l~ 505 (608)
.++.++++
T Consensus 244 ~L~~L~l~ 251 (592)
T 3ogk_B 244 NLEEFCGG 251 (592)
T ss_dssp TCCEEEEC
T ss_pred HHHhhccc
Confidence 44555544
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.29 E-value=0.013 Score=59.61 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=64.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCc-EEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQ-LVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~-~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.|+.|+|++|+++..-+..|..+++|+.|+|++| +...-+.+|.+|++|+ .+++.+ +++..-+..+..+. .|+.++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~-~L~~l~ 303 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD-NLRYVL 303 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-TEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc-cCCEEE
Confidence 4788999999999444456999999999999998 6644456789999999 999988 66643345555554 788899
Q ss_pred ecCCCCCC
Q 007307 504 LSGNKGLC 511 (608)
Q Consensus 504 l~~N~~~c 511 (608)
+.+|....
T Consensus 304 l~~n~i~~ 311 (329)
T 3sb4_A 304 ATGDKITT 311 (329)
T ss_dssp ECSSCCCE
T ss_pred eCCCccCc
Confidence 98887544
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.60 E-value=0.0044 Score=68.34 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=49.5
Q ss_pred EEEEEEcCCC-CCCCC-CChhhcccccCCeecccCCcCCCCCCcccc----CCCCCcEEEcccccccccCch-hhhh---
Q 007307 425 VISQIDLGSQ-GLKGY-ISDKISLLSNLVNLDLSDNQFTGSIPDSLT----SSSKLQLVLLNNNLLEGRVPE-ELYS--- 494 (608)
Q Consensus 425 ~l~~L~Ls~n-~l~g~-ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~----~l~~L~~L~Ls~N~l~G~iP~-~l~~--- 494 (608)
+|+.|+|+++ .++.. ++..+..+++|++|+|++|.+++..+..+. .+++|+.|++++|. +.+.. .+..
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVT 208 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHH
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHH
Confidence 4677777777 44322 344445678888888888887765544443 56688888888776 22321 1211
Q ss_pred ccCCCCeEeecCC
Q 007307 495 IGVHGGAFDLSGN 507 (608)
Q Consensus 495 ~~~~l~~l~l~~N 507 (608)
..++++.+++++|
T Consensus 209 ~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 209 RCPNLKSLKLNRA 221 (594)
T ss_dssp HCTTCCEEECCTT
T ss_pred hCCCCcEEecCCC
Confidence 1247788888776
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.18 E-value=0.015 Score=53.67 Aligned_cols=84 Identities=12% Similarity=0.003 Sum_probs=59.5
Q ss_pred eEEEEEEcCCCCCCCCCChhhcccccCCeecccCCc-CCCCCCccccCC----CCCcEEEccccc-ccccCchhhhhccC
Q 007307 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQ-FTGSIPDSLTSS----SKLQLVLLNNNL-LEGRVPEELYSIGV 497 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~G~iP~~l~~l----~~L~~L~Ls~N~-l~G~iP~~l~~~~~ 497 (608)
..|+.|||+++.++-.==..+..+++|++|+|+++. ++..-=..++.+ ++|+.|+|+++. ++..--..+..+ +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~-~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF-R 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC-T
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC-C
Confidence 469999999998764333457889999999999985 653322345554 479999999874 664322345555 4
Q ss_pred CCCeEeecCCC
Q 007307 498 HGGAFDLSGNK 508 (608)
Q Consensus 498 ~l~~l~l~~N~ 508 (608)
+|+.|++++.+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88999998654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.87 E-value=0.0075 Score=62.69 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=57.8
Q ss_pred eEEEEEEcCCCCCCCCCChhhc---ccccCCeecccCCcCCCC----CCccccCCCCCcEEEcccccccccCchhhhhcc
Q 007307 424 VVISQIDLGSQGLKGYISDKIS---LLSNLVNLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 496 (608)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~---~L~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~ 496 (608)
.+|+.|+|++|.+....+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|+|++|.++...-..+...
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a- 330 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS- 330 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH-
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH-
Confidence 4578899998887754443443 578999999999998763 45555678899999999998875433334331
Q ss_pred CCCCeEeecCCC
Q 007307 497 VHGGAFDLSGNK 508 (608)
Q Consensus 497 ~~l~~l~l~~N~ 508 (608)
....++++.|+
T Consensus 331 -lg~~~~~~~~~ 341 (362)
T 2ra8_A 331 -LPMKIDVSDSQ 341 (362)
T ss_dssp -CCSEEECCSBC
T ss_pred -cCCEEEecCCc
Confidence 13457777765
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.30 E-value=0.077 Score=53.82 Aligned_cols=76 Identities=17% Similarity=0.077 Sum_probs=58.0
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCC-eecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEe
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLV-NLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 503 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~-~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~ 503 (608)
.|+.|+|++| ++..-+..|.++.+|+ .|+|.+ +++-.-+.+|.+|++|+.|++++|+++..-+..+..+. +|+.+.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~-~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV-PSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC-CCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc-chhhhc
Confidence 4788999998 7744456799999999 999999 77744558899999999999999999854444444443 555543
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=89.34 E-value=0.058 Score=55.88 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=33.2
Q ss_pred ccccCCeecccCCcCCCCCCcccc---CCCCCcEEEccccccccc----CchhhhhccCCCCeEeecCCC
Q 007307 446 LLSNLVNLDLSDNQFTGSIPDSLT---SSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFDLSGNK 508 (608)
Q Consensus 446 ~L~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~Ls~N~l~G~----iP~~l~~~~~~l~~l~l~~N~ 508 (608)
.+++|+.|+|++|.+....+..+. .+++|+.|+|+.|++++. ++..+..+. +|+.|++++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-HLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-TCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-cceEEECCCCc
Confidence 356667777766666543332222 356677777777666653 222222232 56666666553
No 156
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=88.55 E-value=8.5 Score=33.60 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCccEEeecCCCceeEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEeeCCeEEEEEee
Q 007307 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (608)
Q Consensus 87 ~~~~cY~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~l~v~f~~ 166 (608)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||........+-.+..-.........+....|.=.|.|..
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~ 114 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA 114 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence 445588888878899999988875421 2578999999976432222211211111111222234455554555553
Q ss_pred c-CCCCceeeeeeeEecC
Q 007307 167 F-ATDPPVIASLEVQQID 183 (608)
Q Consensus 167 ~-~~~~pfIs~iEl~~l~ 183 (608)
. ..+.|.|.-|+|.+.+
T Consensus 115 ~~~~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 115 IASDGGPNVDYLKVFSAN 132 (144)
T ss_dssp CSTTCCCEEEEEEEEECT
T ss_pred eCCCCCEEEeEEEEEeCC
Confidence 2 3456999999998755
No 157
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=85.32 E-value=14 Score=31.25 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCCccEEeecCCCceeEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEeeCCeEEEEEee
Q 007307 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (608)
Q Consensus 87 ~~~~cY~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~l~v~f~~ 166 (608)
|..-.|++.+.+.|.|.|++.+.-+. + ..+.++|++||........+-.+..-....-....+....+.=.|.|..
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~rya~~~--~--~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~~ 113 (127)
T 2vzp_A 38 GSSVEWTVTVPSAGTYDVVVRYANGT--T--TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAVA 113 (127)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCS--S--SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEEcCCCCEEEEEEEEEcCC--C--CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEEE
Confidence 45568999887889999999887543 1 3578999999976433222211211111111122334455554455544
Q ss_pred c-CCCCceeeeeee
Q 007307 167 F-ATDPPVIASLEV 179 (608)
Q Consensus 167 ~-~~~~pfIs~iEl 179 (608)
. +.+.|-|.-|+|
T Consensus 114 ~~~~~~~niD~i~v 127 (127)
T 2vzp_A 114 TTANGGPNVDKITL 127 (127)
T ss_dssp CSTTCCCEEEEEEC
T ss_pred eCCCCCeEEEEEEC
Confidence 3 345677777764
No 158
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=83.00 E-value=1 Score=31.00 Aligned_cols=12 Identities=33% Similarity=0.282 Sum_probs=4.4
Q ss_pred HHHHHHHhhhhc
Q 007307 547 VLLVVYICCIRR 558 (608)
Q Consensus 547 ~~~~~~~~~~~r 558 (608)
++++++++.+||
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333333333333
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=82.66 E-value=0.51 Score=43.33 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=43.6
Q ss_pred ccCCeecccCCcCCCCCCccccCCCCCcEEEccccc-ccccCchhhhhc---cCCCCeEeecCCC
Q 007307 448 SNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL-LEGRVPEELYSI---GVHGGAFDLSGNK 508 (608)
Q Consensus 448 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~-l~G~iP~~l~~~---~~~l~~l~l~~N~ 508 (608)
..|+.|||+++.++..=-..+.+|++|+.|+|+++. ++..--..+..+ ..+|+.|+++++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 469999999999875434567899999999999985 654322233332 1258899999754
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=82.53 E-value=0.42 Score=44.75 Aligned_cols=82 Identities=9% Similarity=0.203 Sum_probs=45.4
Q ss_pred EEEEEcCCC-CCCC----CCChhhcccccCCeecccCCcCCC----CCCccccCCCCCcEEEcccccccccCchhhhhc-
Q 007307 426 ISQIDLGSQ-GLKG----YISDKISLLSNLVNLDLSDNQFTG----SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI- 495 (608)
Q Consensus 426 l~~L~Ls~n-~l~g----~ip~~~~~L~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~- 495 (608)
|+.|+|++| ++.. .+-..+..=+.|+.|+|++|++.. .|-..+..-+.|+.|+|++|+++..--..+...
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 566777764 4431 122234445677788888887752 222334445678888888888764322222211
Q ss_pred --cCCCCeEeecCC
Q 007307 496 --GVHGGAFDLSGN 507 (608)
Q Consensus 496 --~~~l~~l~l~~N 507 (608)
...++.|+|++|
T Consensus 123 ~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 123 LVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTCCCSEEECCCC
T ss_pred hhCCceeEEECCCC
Confidence 234667777654
No 161
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=82.43 E-value=21 Score=31.23 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=53.7
Q ss_pred CCCccEEeecCCCceeEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEeeCCeEEEEEee
Q 007307 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (608)
Q Consensus 87 ~~~~cY~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~l~v~f~~ 166 (608)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||...-. ...-.+.+-....-..+.+....+.=.|.|..
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~-v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~ 112 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKT-LDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVA 112 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEE-ECCCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeE-EEecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence 445588888878899999888763321 3578999999976422 22211111111111222333455554555554
Q ss_pred c-CCCCceeeeeeeEecC
Q 007307 167 F-ATDPPVIASLEVQQID 183 (608)
Q Consensus 167 ~-~~~~pfIs~iEl~~l~ 183 (608)
. +.+.|-|..|+|.+.+
T Consensus 113 ~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 113 ETADGLANIDSIRVTGNG 130 (145)
T ss_dssp CSTTCCCEEEEEEECSTT
T ss_pred ecCcCCEEEEEEEEEcCC
Confidence 3 3467999999987644
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=79.64 E-value=1.3 Score=46.17 Aligned_cols=80 Identities=6% Similarity=0.044 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCCC-----CCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCch-hhhhccCC
Q 007307 425 VISQIDLGSQGLK-----GYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVH 498 (608)
Q Consensus 425 ~l~~L~Ls~n~l~-----g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~-~l~~~~~~ 498 (608)
.|+.+++.+|.+. -.-+..|..+++|+.++|.+ .+.-.-..+|.+|++|+.+.|.+| ++ .|+. .+..+ .
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~--~ 346 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT--G 346 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS--C
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC--C
Confidence 3667777776654 22345688888999999884 466333457888899999998655 55 3443 34333 6
Q ss_pred CCeEeecCCCC
Q 007307 499 GGAFDLSGNKG 509 (608)
Q Consensus 499 l~~l~l~~N~~ 509 (608)
|+.+.+.+|..
T Consensus 347 L~~l~l~~n~~ 357 (401)
T 4fdw_A 347 IKEVKVEGTTP 357 (401)
T ss_dssp CCEEEECCSSC
T ss_pred CCEEEEcCCCC
Confidence 88888888754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=79.09 E-value=0.69 Score=43.30 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCCCC----CCChhhcccccCCeecccCCcCCCC----CCccccCCCCCcEEEcccc
Q 007307 425 VISQIDLGSQGLKG----YISDKISLLSNLVNLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g----~ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N 482 (608)
.|+.|+|++|++.. .|-..+..=+.|++|+|++|++... +-+.+..-+.|+.|+|++|
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 47889999999872 2333344567899999999999732 3344556678999999865
No 164
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=78.40 E-value=1.5 Score=30.18 Aligned_cols=9 Identities=11% Similarity=0.205 Sum_probs=3.3
Q ss_pred HHHHhhhhc
Q 007307 550 VVYICCIRR 558 (608)
Q Consensus 550 ~~~~~~~~r 558 (608)
+++++++||
T Consensus 29 ~~~~~~RRR 37 (44)
T 2l2t_A 29 TFAVYVRRK 37 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 333333333
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=76.09 E-value=2.5 Score=44.10 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=40.5
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEee
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 504 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l 504 (608)
.|+.++|+.|+++ .|+...-...+|+.+.|.+| +.-.-..+|.+|++|+.++|..| ++ .|+.....- ..++.+.+
T Consensus 181 ~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 181 NLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE
T ss_pred cCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe
Confidence 4566666666666 34333222466666666643 44233345667777777777654 33 233332222 25666666
Q ss_pred c
Q 007307 505 S 505 (608)
Q Consensus 505 ~ 505 (608)
.
T Consensus 256 p 256 (401)
T 4fdw_A 256 P 256 (401)
T ss_dssp E
T ss_pred C
Confidence 3
No 166
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=75.50 E-value=15 Score=32.55 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=51.9
Q ss_pred ccEE-eecCCCceeEEEEEeecCCC------CCCCCCCcEEEEECCEEEEe-cCCCCCcccCCCceEEEEEEEeeCCeEE
Q 007307 90 NCYI-IPNLPPGRYYIRTFTVYDNY------DGKSHSPSFDVSVEGTLVFS-WRSPWPEGLARDGAYSDLFAFVKDGELD 161 (608)
Q Consensus 90 ~cY~-~~~~~~~~yliRl~F~y~ny------d~~~~~~~Fdv~~~~~~~l~-~~~~~~~~~~~~~~~~e~~~~~~~~~l~ 161 (608)
-.|+ +.+.+.|.|.|++.|.-+.. ......+..+|.+||...-. .|. .+..-....-..+.+....+.=.
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp--~Tg~W~~~~~~tv~V~L~aG~Nt 126 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFF--NTRGWNTYRTDIIDVYLNAGNNT 126 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEEC--CCSSTTCCEEEEEEEEECSEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeC--CCCCCCcceEEEEEEEECCCceE
Confidence 3677 77777899999999865531 11113678999998754111 121 11100111112223344566656
Q ss_pred EEEeec--CCCCceeeeeeeEecC
Q 007307 162 LCFYSF--ATDPPVIASLEVQQID 183 (608)
Q Consensus 162 v~f~~~--~~~~pfIs~iEl~~l~ 183 (608)
|.|... ....|-|-.|+|.+..
T Consensus 127 I~~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 127 IRFYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EEEECCSTTCBCCEEEEEEEEC--
T ss_pred EEEEecCCCCCCcEEEEEEEeccc
Confidence 777766 3446899999987643
No 167
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=71.43 E-value=30 Score=29.91 Aligned_cols=91 Identities=14% Similarity=0.014 Sum_probs=51.2
Q ss_pred CCCccEEeecCCCceeEEEEEeecCCCCCCCCCCcEEEEECCEEE-EecCCCCCcccCCCceEEEEEEEeeCCeEEEEEe
Q 007307 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV-FSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (608)
Q Consensus 87 ~~~~cY~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~~~~~-l~~~~~~~~~~~~~~~~~e~~~~~~~~~l~v~f~ 165 (608)
|..-.|++.+.+.|.|.|++.+.-+. + ..+..+|++||... ........+..-....-....+....+.=.|.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~--~--~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 113 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGG--T--ANRNGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQLS 113 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS--S--SCCCEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC--C--CCceEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEEE
Confidence 34457888887789999998886542 1 24679999987532 0111111111111111122333345555445555
Q ss_pred ecC-CCCceeeeeeeEe
Q 007307 166 SFA-TDPPVIASLEVQQ 181 (608)
Q Consensus 166 ~~~-~~~pfIs~iEl~~ 181 (608)
... .+.|-|.-|+|.+
T Consensus 114 ~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 114 ATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp ESSTTCCCEEEEEEEES
T ss_pred EcCCCCCEEEEEEEEec
Confidence 433 4679999999875
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=68.97 E-value=2.6 Score=28.95 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=5.7
Q ss_pred HHHHHHHhhhhcCC
Q 007307 547 VLLVVYICCIRRGR 560 (608)
Q Consensus 547 ~~~~~~~~~~~r~~ 560 (608)
++++++++.+||+.
T Consensus 27 ~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 27 LGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHhheehhhh
Confidence 33333444444443
No 169
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=68.43 E-value=1.5 Score=29.20 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=9.2
Q ss_pred ceEEehhhHHHHHHHHHHHHHHh
Q 007307 532 GKIAIVILSLVLFSGVLLVVYIC 554 (608)
Q Consensus 532 ~~i~i~~~~~~~~~~~~~~~~~~ 554 (608)
.+.+++++.++.+++++.+++++
T Consensus 12 aIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 12 EIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeehHHHHHHHHHHHHHHHH
Confidence 34444444443333333333333
No 170
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=59.17 E-value=67 Score=32.70 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=52.0
Q ss_pred ccEEeecCCCceeEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEeeCCeEEEEEeecCC
Q 007307 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT 169 (608)
Q Consensus 90 ~cY~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~l~v~f~~~~~ 169 (608)
+.+++.+ ++|.|.|.+.+--+ ..=.|...+...+. .. .......++.+++.++.+.+.+...-.
T Consensus 78 ~~f~v~~-~~g~Y~v~v~~g~~--------~~~~v~~e~~~~~~-----~~--~g~~~~~~~~v~~~~g~~~l~~~~~~~ 141 (375)
T 2o14_A 78 NTFNVDL-PNGLYEVKVTLGNT--------ARASVAAEGVFQVI-----NM--TGDGAEDTFQIPVTDGQLNLLVTEGKA 141 (375)
T ss_dssp CCEEEEC-CSEEEEEEEEESSC--------SEEEEEETTEEEEE-----EE--ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred eEEEEEc-CCCceEEEEEecCC--------cceEEEEcceEEEE-----ec--CCCcEEEEEEEEeeCCeEEEeeeeccC
Confidence 4566666 68999999988643 23344555553333 11 123345677788889999998875433
Q ss_pred C-CceeeeeeeEecCC
Q 007307 170 D-PPVIASLEVQQIDP 184 (608)
Q Consensus 170 ~-~pfIs~iEl~~l~~ 184 (608)
+ .+++++||+.+.+.
T Consensus 142 g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 142 GTAFTLSALKIKKLSD 157 (375)
T ss_dssp TSCCEEEEEEEEEEES
T ss_pred CCCcccceEEEeccCC
Confidence 3 57999999998653
No 171
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=56.51 E-value=33 Score=29.86 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=33.8
Q ss_pred CceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCeeeceeeee
Q 007307 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIF 323 (608)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~~l~~~di~ 323 (608)
..++|.+.+.....|.+.++++.- ..+.|.++|++||.....+.++
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~~~v~~p 84 (145)
T 2w3j_A 39 ASIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQIKTLDFP 84 (145)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEECCC
T ss_pred CEEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEeeEEEec
Confidence 348888888778899999988742 1236889999999865545544
No 172
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=49.47 E-value=22 Score=36.23 Aligned_cols=78 Identities=13% Similarity=0.319 Sum_probs=44.9
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCchh-hhhccCCCCeEee
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDL 504 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~-l~~~~~~l~~l~l 504 (608)
|+.+.+. +.++..-...|.++.+|+.++|..+ ++-.-..+|.+|.+|+.+.|..+ ++ .|... +..+. +|+.+++
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~-~L~~i~~ 364 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCT-ALNNIEY 364 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCT-TCCEEEE
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCC-CCCEEEE
Confidence 4455553 3444222345777778888877654 44222346777888888887654 44 34433 33333 6777777
Q ss_pred cCCC
Q 007307 505 SGNK 508 (608)
Q Consensus 505 ~~N~ 508 (608)
.+|.
T Consensus 365 ~~~~ 368 (394)
T 4gt6_A 365 SGSR 368 (394)
T ss_dssp SSCH
T ss_pred CCce
Confidence 6653
No 173
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=48.86 E-value=14 Score=37.72 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=40.9
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCC-CccccCCCCCcEEEcccccccccCch-hhhhccCCCCeEe
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSI-PDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFD 503 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~i-P~~l~~l~~L~~L~Ls~N~l~G~iP~-~l~~~~~~l~~l~ 503 (608)
|+.+.+..+ ++-.-...|.++.+|+.++|.++ ++ .| ..+|.+|++|+.+++..| ++ .|.+ .+..+. +|+.++
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~-~L~~i~ 372 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI-NLKKVE 372 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT-TCCEEE
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC-CCCEEE
Confidence 445555433 44222345677777777777644 44 33 346777777777777655 44 3333 233332 566666
Q ss_pred ecC
Q 007307 504 LSG 506 (608)
Q Consensus 504 l~~ 506 (608)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 543
No 174
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=46.69 E-value=71 Score=27.45 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=33.2
Q ss_pred CceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCee-eceeeee
Q 007307 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN-VTRVDIF 323 (608)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~~-l~~~di~ 323 (608)
..++|.+.+.....|.+.++++.- ....|.++|+|||.. ...+.++
T Consensus 40 ~~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~p 86 (144)
T 2w47_A 40 GYIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDFV 86 (144)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCC
T ss_pred CEEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEec
Confidence 348888888777889999988852 123688999999985 3445443
No 175
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=44.36 E-value=48 Score=28.54 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=33.4
Q ss_pred CceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCeee--ceeeeec
Q 007307 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV--TRVDIFN 324 (608)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~~l--~~~di~~ 324 (608)
..++|...+.....|.+.++++.-. ...|..+|++||... ..+.++.
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang~-----~~~r~~~l~VNG~~~g~~~v~~p~ 87 (139)
T 2w87_A 39 AAVVWAIDATSSGRRTLTIRYANGG-----TANRNGSLVINGGSNGNYTVSLPT 87 (139)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCS-----SSCCCEEEEETTTTTCEEEECCCC
T ss_pred CEEEEEEECCCCcEEEEEEEEECCC-----CCCceEEEEECCEEcceeEEEecC
Confidence 3478888887788999999887521 125889999999754 4455443
No 176
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=42.11 E-value=1.5e+02 Score=24.62 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=33.0
Q ss_pred CceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCeee-ceeee
Q 007307 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV-TRVDI 322 (608)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~~l-~~~di 322 (608)
..++|.+.+.....|.+.++++.-. ...|.++|++||... ..+.+
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~~~~v~~ 84 (127)
T 2vzp_A 39 SSVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSISASGVAF 84 (127)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEEEEEECC
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEeeeEEEe
Confidence 3488888888788999999988632 236788999999854 23444
No 177
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=38.99 E-value=24 Score=35.69 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=27.9
Q ss_pred hhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc
Q 007307 442 DKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 442 ~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 482 (608)
..|..+.+|+.+.+.++.+.-.-..+|.+|.+|+.+.|..+
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 35667777888877777766333356777778888777644
No 178
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=33.73 E-value=1.8e+02 Score=25.50 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=35.0
Q ss_pred CceEEE-EEecCCCcEEEEEEeeecccc----cc-CCcceEEEEEECCeeeceeeee
Q 007307 273 GAIQYN-LAVDAKLDYLIWFHFAEIDSS----VT-KAGQRVFDILVNDKNVTRVDIF 323 (608)
Q Consensus 273 ~~lt~~-~~v~~~~~y~v~LhF~ei~~~----~~-~~~~r~F~V~in~~~l~~~di~ 323 (608)
+.++|. ..++....|.+.++|+.-... .. ....|...|.|||.....+..+
T Consensus 47 ~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp 103 (156)
T 2wz8_A 47 NYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFF 103 (156)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEEC
T ss_pred CEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeC
Confidence 458888 888878899999999864311 00 1137999999999854344443
No 179
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=32.42 E-value=24 Score=36.00 Aligned_cols=56 Identities=14% Similarity=0.114 Sum_probs=41.4
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccc
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 482 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 482 (608)
.|+.++|.. .++-.-...|.++.+|+.++|..| +.-.-..+|.+|++|+.+++..+
T Consensus 321 ~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 321 SLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 466777764 366233457899999999999877 65233468999999999998754
No 180
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=30.29 E-value=72 Score=23.71 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=15.1
Q ss_pred ehhhHHHHHHHHHHHHHHhhhhcCCCCCCCCCcchhhhh
Q 007307 536 IVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDLMSL 574 (608)
Q Consensus 536 i~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 574 (608)
++++.++.+++++.+.+++|.|.++.++.-++.....++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAeRMSQikrl 50 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAERMSQIKRL 50 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCTTSSHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444333333333334344333333333444444333
No 181
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=28.26 E-value=58 Score=32.69 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=51.1
Q ss_pred EEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCccccCCCCCcEEEcccccccccCch-hhhhccCCCCeEee
Q 007307 426 ISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFDL 504 (608)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~-~l~~~~~~l~~l~l 504 (608)
|+.+.+..+ ++..-...|.++.+|+.+.+..+ +.-.-...|.+|++|+.+.+.++.++ .|++ .+..+. +|+.+.|
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~-~L~~i~l 317 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCV-KLSSVTL 317 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCT-TCCEEEC
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCC-CCCEEEc
Confidence 455666544 44233456778889999988654 44222356889999999999988887 3443 444443 6777777
Q ss_pred cCC
Q 007307 505 SGN 507 (608)
Q Consensus 505 ~~N 507 (608)
..+
T Consensus 318 p~~ 320 (379)
T 4h09_A 318 PTA 320 (379)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=27.66 E-value=42 Score=34.13 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=43.4
Q ss_pred EEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCC-ccccCCCCCcEEEccccccc
Q 007307 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIP-DSLTSSSKLQLVLLNNNLLE 485 (608)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N~l~ 485 (608)
.|+.+.|..+ ++-.-...|.++.+|+.+.|..+ ++ .|. .+|.+|++|+.+++.+|...
T Consensus 312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHH
T ss_pred CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceee
Confidence 3677888653 55333456899999999999765 55 454 57999999999999987643
No 183
>4d8m_A Pesticidal crystal protein CRY5BA; glycolipid binding, lipid binding protein; 2.30A {Bacillus thuringiensis}
Probab=24.15 E-value=1.7e+02 Score=31.52 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=51.0
Q ss_pred cEEeecCCCceeEEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcc--------cCCCceEEEE-EEEeeCCeEE
Q 007307 91 CYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEG--------LARDGAYSDL-FAFVKDGELD 161 (608)
Q Consensus 91 cY~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~--------~~~~~~~~e~-~~~~~~~~l~ 161 (608)
-|.|.....++|-||..+.-.+ |. .-.|.+..|++.+.-....-+|. ..+..++++. .+..+.+.++
T Consensus 489 ~~~i~n~~~~~Y~VR~RYAS~~-d~---~~~~~~~~~~~~i~n~~~fp~T~~~~~~v~G~nG~y~~~~~~~~~~p~g~~t 564 (587)
T 4d8m_A 489 GIQITNQTKQKYEIRCRYASKG-DN---NVYFNVDLSENPFRNSISFGSTESSVVGVQGENGKYILKSITTVEIPAGSFY 564 (587)
T ss_dssp EEEEEECSCEEEEEEEEEEESS-CE---EEEEEECCSSSCEEEEEEECCCTTCSSSEECSSSEEEEEEEEEEEECSEEEE
T ss_pred EEEEEccccceEEEEEEEecCC-Cc---eEEEEEcCCCceeeccCCCCccccccccccccCCceEeecCCceEecCCcEE
Confidence 4455555678999999986532 22 23466666775542211111121 1233344443 2234677888
Q ss_pred EEEeecCCCCceeeeeeeEe
Q 007307 162 LCFYSFATDPPVIASLEVQQ 181 (608)
Q Consensus 162 v~f~~~~~~~pfIs~iEl~~ 181 (608)
|.+.+.+.+-=||--||++|
T Consensus 565 ~~i~nn~~~~~~iDRIEFiP 584 (587)
T 4d8m_A 565 VHITNQGSSDLFLDRIEFVP 584 (587)
T ss_dssp EEEEECSSSCEEEEEEEEEE
T ss_pred EEEEecCCCCEEEEEEEeee
Confidence 88888666667999999988
No 184
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=23.17 E-value=3.7e+02 Score=23.35 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=29.0
Q ss_pred CCCCccEEeecCCCceeEEEEEeecCCCCCCCCCCcEEEEECCE
Q 007307 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGT 129 (608)
Q Consensus 86 ~~~~~cY~~~~~~~~~yliRl~F~y~nyd~~~~~~~Fdv~~~~~ 129 (608)
.|..-.|++.+.+.|.|-|.+....+. . ...+.|.+++.
T Consensus 65 ~Gdwl~y~V~v~~aG~Y~i~~rvas~~-~----g~~i~l~vdg~ 103 (160)
T 2cdp_A 65 QGDYADYTIAVAQAGNYTISYQAGSGV-T----GGSIEFLVNEN 103 (160)
T ss_dssp TTCEEEEEEEESSCEEEEEEEEEEBSS-S----SCEEEEEEECS
T ss_pred CCCEEEEEEEcCCCcEEEEEEEEEcCC-C----CceEEEEECCC
Confidence 355669999998899999988876543 2 24788888773
Done!