BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007310
(608 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1
Length = 521
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 125/202 (61%), Gaps = 3/202 (1%)
Query: 42 GISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNA 101
G+S + ++Y+ S C DG+ Q+NDDYCDC DG+DEPGT+ACPNG F+C N
Sbjct: 22 GVSLSNHHFYE-ESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNT 80
Query: 102 GHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLL 161
G+ PL I SS+VNDG+CDCCDG+DEY+ C NTC E G+ ++ L++ +EG L
Sbjct: 81 GYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEKESLQQLAEVTREGFRL 140
Query: 162 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKE 221
+K IE+ K + +++L L+ +K L+ V+ L+ KE+ E+ E++ + Q K +E
Sbjct: 141 KKILIEEWKTAREEKQSKLLELQAGKKSLEDQVETLRAAKEEAERPEKEAKDQHRKLWEE 200
Query: 222 RKEAEENERKEKSESGEKAMQE 243
++ A + R++ E A QE
Sbjct: 201 QQAAAKARREQ--ERAASAFQE 220
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 500 DAAR-VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKV 558
DAA+ R +++E L +++ I SL Q++ +FGP EF Y C+E N+YVY++
Sbjct: 361 DAAQEARSKFEEVERSLKEMEESIRSLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYRL 420
Query: 559 CPYKKATQEEGH--STTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVTL 608
CP+K +Q+ H S T LG+W + D + M + G CW GP+RS V L
Sbjct: 421 CPFKLVSQKPKHGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRL 476
>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2
Length = 528
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 120/191 (62%), Gaps = 1/191 (0%)
Query: 42 GISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNA 101
G+S + ++Y S C DGS Q+NDDYCDC DG+DEPGT+ACPNG F+C N
Sbjct: 22 GVSLTNHHFYD-ESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNT 80
Query: 102 GHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLL 161
G+ PL I S++VNDG+CDCCDG+DEY+ V C NTC E G+ R+ L++ +EG L
Sbjct: 81 GYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESLQQMAEVTREGFRL 140
Query: 162 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKE 221
+K IE K+ + + +L L+ +K L+ V+ L+ KE+ EK E + + Q +K +E
Sbjct: 141 KKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEMLRTVKEEAEKPEREAKEQHQKLWEE 200
Query: 222 RKEAEENERKE 232
+ A + ++++
Sbjct: 201 QLAAAKAQQEQ 211
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 500 DAAR-VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKV 558
DAA+ R +++E+ L ++ I +L Q++ +FGP EF Y C+E N+YVY++
Sbjct: 368 DAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRL 427
Query: 559 CPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVTL 608
CP+K +Q+ G S T LG+W + D + M + G CW GP+RS V L
Sbjct: 428 CPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRL 483
>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1
Length = 533
Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 42 GISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNA 101
G+S + ++Y S C DGS Q+NDDYCDC DG+DEPGT+ACPNG F+C N
Sbjct: 21 GVSLTNHHFYD-ESKPFTCLDGSASIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNT 79
Query: 102 GHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLL 161
G+ L I S VNDG+CDCCDG+DEY+ + C NTC E G+ R+ L++ +EG L
Sbjct: 80 GYKALYISSRWVNDGVCDCCDGTDEYNSGIVCENTCKEKGRKERETLQQMAEVTREGFRL 139
Query: 162 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLK 198
+K IE K+ + + +L L+ +K L+ V+ L+
Sbjct: 140 KKILIEDWKKAREEKQKKLIELQAGKKSLEDQVEVLR 176
>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gtb1 PE=1 SV=1
Length = 506
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 12/166 (7%)
Query: 8 FRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQDENYYKT-SSNTIKCKDGSKK 66
F Y + LL S + NAA+ L G++ + YK + KC K
Sbjct: 3 FSQWYTLTAPLLISSLYTV---NAANDL-----RGVASDKSDLYKPDAKGNWKCLGSDKL 54
Query: 67 FAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDE 126
+ Q+NDDYCDCPDG+DEPGTSAC NGKF+C+N G+ I S++V+D +CDCCDGSDE
Sbjct: 55 ISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE 114
Query: 127 YDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKK-EIEQAKQ 171
+KCPNTC + + L++ + G+ +R++ +E AK+
Sbjct: 115 --SLIKCPNTCAQKAREYLATLEEHNRLVKNGLKIREQWALESAKK 158
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 554 YVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVTL 608
Y YKV Y+ Q+ + LG++ E +++ + NG CWNGP RS VT+
Sbjct: 395 YTYKVVFYENVFQD----SILLGNFASQEG--NVLKYENGQSCWNGPHRSAIVTV 443
>sp|Q04924|GLU2B_YEAST Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GTB1 PE=1 SV=1
Length = 702
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 78/163 (47%), Gaps = 38/163 (23%)
Query: 70 TQLNDDYCDCPDGTDEPGTSACP--------------NGKFYCQNAGHSPLMIFSSKVND 115
+Q+ND CDCPDG+DEPG++AC N FYC N G P I S+V D
Sbjct: 62 SQINDGVCDCPDGSDEPGSAACVEDIFKSVAEGGGKVNKYFYCDNKGFIPRYIRKSEVAD 121
Query: 116 GICDCCDGSDE-------YDGKVKCPN-------------TCWEAGKVARDKLKKKIATY 155
GICDCCD SDE +D C + + GK A ++L++K T
Sbjct: 122 GICDCCDCSDELLSGYELFDAGSNCSQLKNEFDIMASKELSSYREGKEALEELERKYGTK 181
Query: 156 QEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLK 198
+E + R +E+ K+ K AE+ L N + ++QL+
Sbjct: 182 EEAI-TRGNCLEEDKE---KASAEIKVLSNRLSENRAKLEQLR 220
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 23/172 (13%)
Query: 95 KFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIAT 154
K++C N H +++ S++NDG+CDC DGSDE G C +++ K+ K
Sbjct: 48 KWHCLN--HEDIVLDISQINDGVCDCPDGSDE-PGSAACVEDIFKSVAEGGGKVNKYFYC 104
Query: 155 YQEGVL---LRKKEIEQAKQNLVKDEAEL-------------SNLKNEEKILKGLVQQLK 198
+G + +RK E+ + EL S LKNE I+ ++L
Sbjct: 105 DNKGFIPRYIRKSEVADGICDCCDCSDELLSGYELFDAGSNCSQLKNEFDIMAS--KELS 162
Query: 199 ERKEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAEEN 250
+E E EE ER KEE + E KEK+ + K + N+ EN
Sbjct: 163 SYREGKEALEELERKYGTKEEAITRGNCLEEDKEKASAEIKVLS--NRLSEN 212
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.126 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 242,804,040
Number of Sequences: 539616
Number of extensions: 11788452
Number of successful extensions: 168484
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2279
Number of HSP's successfully gapped in prelim test: 5411
Number of HSP's that attempted gapping in prelim test: 67128
Number of HSP's gapped (non-prelim): 42205
length of query: 608
length of database: 191,569,459
effective HSP length: 123
effective length of query: 485
effective length of database: 125,196,691
effective search space: 60720395135
effective search space used: 60720395135
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 64 (29.3 bits)