Query 007310
Match_columns 608
No_of_seqs 291 out of 807
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 21:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2397 Protein kinase C subst 100.0 4.4E-78 9.5E-83 642.8 26.9 411 41-608 29-439 (480)
2 PF12999 PRKCSH-like: Glucosid 100.0 6.6E-50 1.4E-54 384.2 15.6 153 38-192 17-174 (176)
3 PF13015 PRKCSH_1: Glucosidase 100.0 8.4E-29 1.8E-33 235.1 8.9 99 504-608 1-99 (154)
4 PF12999 PRKCSH-like: Glucosid 99.3 5.8E-12 1.3E-16 122.3 8.2 103 93-200 35-168 (176)
5 KOG2397 Protein kinase C subst 98.5 1E-07 2.2E-12 104.1 6.6 109 54-197 79-191 (480)
6 PF00057 Ldl_recept_a: Low-den 98.4 1.3E-07 2.9E-12 70.1 3.2 34 90-127 2-35 (37)
7 cd00112 LDLa Low Density Lipop 98.4 1.3E-07 2.7E-12 69.3 2.1 33 91-127 1-33 (35)
8 cd00112 LDLa Low Density Lipop 98.3 3.5E-07 7.6E-12 67.0 2.4 32 55-87 3-34 (35)
9 smart00192 LDLa Low-density li 98.3 3.9E-07 8.4E-12 65.8 2.4 32 91-126 2-33 (33)
10 PF00057 Ldl_recept_a: Low-den 98.3 5.4E-07 1.2E-11 66.9 2.5 33 54-87 4-36 (37)
11 smart00192 LDLa Low-density li 98.1 2.3E-06 5E-11 61.8 2.6 29 56-85 5-33 (33)
12 PF07915 PRKCSH: Glucosidase I 98.0 3.3E-06 7.1E-11 71.5 2.4 53 544-596 1-81 (81)
13 KOG1215 Low-density lipoprotei 96.8 0.0014 3E-08 77.8 5.4 82 42-127 204-292 (877)
14 KOG1215 Low-density lipoprotei 96.6 0.0013 2.8E-08 78.0 3.3 70 55-127 140-251 (877)
15 PF10211 Ax_dynein_light: Axon 91.5 9.7 0.00021 38.0 15.8 37 171-207 120-156 (189)
16 PTZ00266 NIMA-related protein 85.1 17 0.00037 45.0 14.9 66 501-566 905-972 (1021)
17 KOG3394 Protein OS-9 [General 85.1 0.82 1.8E-05 51.6 3.7 89 518-607 80-196 (502)
18 KOG3509 Basement membrane-spec 82.5 1.9 4.1E-05 52.3 5.5 72 54-129 33-110 (964)
19 PF10186 Atg14: UV radiation r 76.6 94 0.002 31.8 17.5 12 129-141 10-21 (302)
20 PF10186 Atg14: UV radiation r 75.6 1E+02 0.0022 31.6 16.1 8 93-100 9-16 (302)
21 KOG4364 Chromatin assembly fac 72.7 60 0.0013 38.5 13.3 9 367-375 482-490 (811)
22 KOG4001 Axonemal dynein light 69.5 1.1E+02 0.0025 31.5 13.0 54 159-214 175-228 (259)
23 KOG1029 Endocytic adaptor prot 69.0 1.3E+02 0.0029 36.5 15.2 6 556-561 909-914 (1118)
24 PRK00409 recombination and DNA 66.8 90 0.002 37.7 13.9 57 148-204 504-560 (782)
25 TIGR01069 mutS2 MutS2 family p 65.9 94 0.002 37.5 13.8 53 152-204 503-555 (771)
26 PRK11637 AmiB activator; Provi 65.4 1.9E+02 0.0041 32.1 15.2 39 162-200 168-206 (428)
27 KOG0163 Myosin class VI heavy 64.1 1.6E+02 0.0035 35.8 14.5 9 555-563 1150-1158(1259)
28 TIGR01069 mutS2 MutS2 family p 61.7 1.9E+02 0.0041 35.0 15.3 30 174-203 532-561 (771)
29 PF06919 Phage_T4_Gp30_7: Phag 61.7 2.8 6E-05 38.5 0.1 50 551-607 40-92 (121)
30 KOG1144 Translation initiation 60.8 61 0.0013 39.2 10.6 16 549-564 601-616 (1064)
31 PRK00409 recombination and DNA 60.8 1.2E+02 0.0025 36.8 13.3 32 173-204 536-567 (782)
32 PF04977 DivIC: Septum formati 57.1 44 0.00095 27.6 6.6 22 176-197 29-50 (80)
33 PF08702 Fib_alpha: Fibrinogen 56.5 1.1E+02 0.0025 29.4 10.1 21 120-142 6-26 (146)
34 PF07246 Phlebovirus_NSM: Phle 55.4 2.9E+02 0.0062 29.5 15.0 53 71-124 55-127 (264)
35 PF07946 DUF1682: Protein of u 55.0 35 0.00077 36.6 7.1 26 158-183 249-274 (321)
36 COG3937 Uncharacterized conser 53.6 32 0.00069 31.9 5.5 45 474-522 62-106 (108)
37 PRK08475 F0F1 ATP synthase sub 53.4 2.2E+02 0.0049 27.7 16.5 44 145-188 48-91 (167)
38 PRK12704 phosphodiesterase; Pr 52.5 4.3E+02 0.0093 30.6 15.9 15 495-509 281-296 (520)
39 KOG2412 Nuclear-export-signal 52.1 4.1E+02 0.0088 31.2 14.9 15 532-547 422-436 (591)
40 PF00769 ERM: Ezrin/radixin/mo 51.9 3E+02 0.0065 28.7 13.8 61 145-205 7-67 (246)
41 PRK06231 F0F1 ATP synthase sub 50.8 2.8E+02 0.0061 28.0 16.0 45 144-188 73-117 (205)
42 PF05262 Borrelia_P83: Borreli 50.6 2.6E+02 0.0056 32.3 13.3 11 101-111 151-161 (489)
43 PF12709 Kinetocho_Slk19: Cent 50.4 1.9E+02 0.0041 26.0 9.7 28 174-201 45-72 (87)
44 KOG1144 Translation initiation 50.1 1.4E+02 0.0031 36.3 11.3 17 155-171 212-228 (1064)
45 PF05262 Borrelia_P83: Borreli 49.2 2.9E+02 0.0062 31.9 13.3 6 65-70 156-161 (489)
46 PF10168 Nup88: Nuclear pore c 48.2 2.3E+02 0.005 34.1 12.9 47 159-205 546-592 (717)
47 PF09726 Macoilin: Transmembra 48.1 3.8E+02 0.0082 32.3 14.6 13 236-248 612-624 (697)
48 KOG2412 Nuclear-export-signal 47.0 5.4E+02 0.012 30.3 15.1 9 553-561 429-437 (591)
49 COG4942 Membrane-bound metallo 47.0 3.3E+02 0.0072 30.9 13.1 20 180-199 212-231 (420)
50 PF13956 Ibs_toxin: Toxin Ibs, 45.5 7.9 0.00017 25.1 0.3 16 8-23 2-17 (19)
51 KOG3119 Basic region leucine z 44.9 1.3E+02 0.0028 31.8 9.2 56 142-197 193-248 (269)
52 PF09726 Macoilin: Transmembra 43.8 5.7E+02 0.012 30.8 15.2 33 499-531 622-654 (697)
53 CHL00118 atpG ATP synthase CF0 43.3 3E+02 0.0066 26.3 15.2 43 146-188 49-91 (156)
54 PRK00247 putative inner membra 42.8 3.9E+02 0.0085 30.4 13.0 13 105-117 248-260 (429)
55 CHL00019 atpF ATP synthase CF0 42.4 3.4E+02 0.0074 26.6 15.9 43 146-188 51-93 (184)
56 PRK14474 F0F1 ATP synthase sub 42.2 4.2E+02 0.0091 27.6 16.3 42 147-188 33-74 (250)
57 PRK13428 F0F1 ATP synthase sub 41.8 5.6E+02 0.012 29.0 15.5 12 368-379 253-264 (445)
58 PF08232 Striatin: Striatin fa 41.8 1.2E+02 0.0026 28.8 7.7 37 169-205 23-59 (134)
59 PF04885 Stig1: Stigma-specifi 41.3 1.1E+02 0.0024 29.4 7.4 58 55-119 55-119 (136)
60 KOG1219 Uncharacterized conser 40.7 20 0.00043 47.7 2.8 57 56-122 3868-3930(4289)
61 PRK06568 F0F1 ATP synthase sub 40.0 3.7E+02 0.008 26.3 13.6 40 148-187 33-72 (154)
62 KOG3054 Uncharacterized conser 38.8 3.3E+02 0.0072 29.0 10.7 15 34-48 33-47 (299)
63 COG4026 Uncharacterized protei 38.6 3.8E+02 0.0082 28.2 11.0 28 173-200 137-164 (290)
64 PRK14472 F0F1 ATP synthase sub 38.5 3.8E+02 0.0082 26.0 16.2 44 145-188 44-87 (175)
65 PRK10884 SH3 domain-containing 36.8 4.5E+02 0.0098 26.8 11.3 29 171-199 118-146 (206)
66 PF04111 APG6: Autophagy prote 36.2 4.7E+02 0.01 28.2 12.0 22 179-200 65-86 (314)
67 smart00030 CLb CLUSTERIN Beta 36.0 4.6E+02 0.01 27.0 11.0 46 138-183 10-55 (206)
68 TIGR03321 alt_F1F0_F0_B altern 36.0 5E+02 0.011 26.7 15.9 42 147-188 33-74 (246)
69 PRK13453 F0F1 ATP synthase sub 35.7 4.3E+02 0.0092 25.8 15.9 44 145-188 44-87 (173)
70 PF06698 DUF1192: Protein of u 35.2 1.1E+02 0.0024 25.5 5.5 28 174-201 24-51 (59)
71 PF04111 APG6: Autophagy prote 35.2 4E+02 0.0086 28.8 11.2 25 178-202 50-74 (314)
72 PF01093 Clusterin: Clusterin; 34.7 2.5E+02 0.0054 32.0 9.9 41 148-188 14-54 (436)
73 PRK10040 hypothetical protein; 34.3 60 0.0013 26.3 3.6 11 54-64 32-42 (52)
74 PRK00106 hypothetical protein; 34.3 8.2E+02 0.018 28.7 16.6 13 516-528 308-320 (535)
75 PF04977 DivIC: Septum formati 34.2 1.4E+02 0.003 24.6 6.1 32 173-204 19-50 (80)
76 PF12958 DUF3847: Protein of u 33.2 1.6E+02 0.0034 26.4 6.5 23 178-200 8-30 (86)
77 PF06364 DUF1068: Protein of u 32.9 5.2E+02 0.011 26.0 11.8 22 106-127 57-78 (176)
78 PRK15422 septal ring assembly 32.8 3.5E+02 0.0076 24.0 8.7 37 169-205 16-52 (79)
79 PHA01750 hypothetical protein 32.7 1.8E+02 0.0039 25.0 6.4 32 499-530 42-73 (75)
80 COG3074 Uncharacterized protei 31.6 3.5E+02 0.0076 23.6 10.3 38 168-205 15-52 (79)
81 PF14193 DUF4315: Domain of un 31.5 1.5E+02 0.0032 26.3 6.0 29 177-205 7-35 (83)
82 KOG2751 Beclin-like protein [S 31.3 7.2E+02 0.016 28.5 12.5 36 137-172 137-172 (447)
83 smart00030 CLb CLUSTERIN Beta 31.1 6.1E+02 0.013 26.2 11.3 56 150-205 8-63 (206)
84 KOG2891 Surface glycoprotein [ 30.8 4.6E+02 0.01 28.4 10.5 12 67-78 157-171 (445)
85 PF07172 GRP: Glycine rich pro 30.4 53 0.0011 29.6 3.2 17 9-25 7-23 (95)
86 PRK13454 F0F1 ATP synthase sub 29.7 5.6E+02 0.012 25.3 15.8 46 143-188 55-100 (181)
87 PF09026 CENP-B_dimeris: Centr 29.6 29 0.00064 31.6 1.4 11 471-481 43-53 (101)
88 PRK06569 F0F1 ATP synthase sub 29.2 5.6E+02 0.012 25.2 10.9 44 147-190 38-81 (155)
89 PRK13428 F0F1 ATP synthase sub 28.0 9.2E+02 0.02 27.3 14.2 38 148-185 30-67 (445)
90 COG4026 Uncharacterized protei 28.0 6.5E+02 0.014 26.6 10.7 31 170-200 141-171 (290)
91 PF04568 IATP: Mitochondrial A 27.9 3.1E+02 0.0068 25.1 7.6 30 161-190 66-95 (100)
92 KOG2391 Vacuolar sorting prote 27.8 5.1E+02 0.011 28.8 10.4 16 183-198 244-259 (365)
93 PF04380 BMFP: Membrane fusoge 27.5 1.9E+02 0.0041 25.0 6.0 28 499-526 50-77 (79)
94 TIGR02209 ftsL_broad cell divi 26.3 2.9E+02 0.0064 23.3 6.9 26 178-203 31-56 (85)
95 PRK07353 F0F1 ATP synthase sub 26.0 5.3E+02 0.011 23.8 15.2 44 145-188 31-74 (140)
96 KOG1219 Uncharacterized conser 25.9 45 0.00097 44.8 2.5 39 60-102 3911-3954(4289)
97 COG4499 Predicted membrane pro 25.9 1.4E+02 0.003 33.6 5.8 21 177-197 368-388 (434)
98 PRK14471 F0F1 ATP synthase sub 25.9 5.9E+02 0.013 24.3 15.9 43 145-187 34-76 (164)
99 PRK14161 heat shock protein Gr 25.8 4E+02 0.0087 26.6 8.7 35 166-200 14-48 (178)
100 PRK00888 ftsB cell division pr 25.5 2.7E+02 0.0059 25.3 6.9 25 175-199 31-55 (105)
101 PRK09174 F0F1 ATP synthase sub 25.4 7.2E+02 0.016 25.2 16.0 45 144-188 78-122 (204)
102 PRK05759 F0F1 ATP synthase sub 25.3 5.7E+02 0.012 24.0 15.9 44 145-188 30-73 (156)
103 PF03962 Mnd1: Mnd1 family; I 24.9 5E+02 0.011 26.0 9.3 10 111-120 38-47 (188)
104 KOG0996 Structural maintenance 24.8 1.4E+03 0.031 29.4 14.5 23 499-521 577-599 (1293)
105 PF07946 DUF1682: Protein of u 24.7 3.2E+02 0.0069 29.4 8.4 9 21-29 18-26 (321)
106 PRK13460 F0F1 ATP synthase sub 24.4 6.6E+02 0.014 24.4 16.2 44 145-188 42-85 (173)
107 PF02157 Man-6-P_recep: Mannos 24.2 50 0.0011 35.2 2.1 69 539-607 53-143 (278)
108 KOG2002 TPR-containing nuclear 24.2 1E+03 0.023 29.9 13.0 9 56-64 644-652 (1018)
109 KOG3626 Organic anion transpor 24.1 1E+02 0.0022 37.2 4.8 59 72-138 513-583 (735)
110 PHA02562 46 endonuclease subun 23.7 1.1E+03 0.024 26.6 16.8 10 115-124 284-293 (562)
111 KOG2391 Vacuolar sorting prote 23.5 7.1E+02 0.015 27.7 10.5 24 179-202 233-256 (365)
112 PRK09039 hypothetical protein; 23.1 1E+03 0.022 26.0 13.9 34 173-206 132-165 (343)
113 PF12128 DUF3584: Protein of u 22.8 1.6E+03 0.034 28.8 14.9 32 512-543 998-1029(1201)
114 PF15066 CAGE1: Cancer-associa 22.7 1.2E+03 0.027 27.0 13.1 87 142-228 421-514 (527)
115 PF03993 DUF349: Domain of Unk 22.6 4.3E+02 0.0092 21.6 7.1 19 152-170 26-44 (77)
116 TIGR01843 type_I_hlyD type I s 22.5 9.7E+02 0.021 25.6 13.0 97 138-238 171-267 (423)
117 KOG4360 Uncharacterized coiled 22.5 1.3E+03 0.028 27.1 13.6 24 178-201 233-256 (596)
118 KOG1079 Transcriptional repres 22.4 80 0.0017 37.5 3.5 78 60-145 512-595 (739)
119 PF10168 Nup88: Nuclear pore c 22.0 1.4E+03 0.03 27.7 13.7 43 136-180 536-578 (717)
120 PF12128 DUF3584: Protein of u 22.0 1.7E+03 0.038 28.4 16.0 12 367-378 799-810 (1201)
121 PF07127 Nodulin_late: Late no 21.7 2.1E+02 0.0046 22.8 4.8 15 9-23 6-20 (54)
122 KOG3054 Uncharacterized conser 21.4 7.5E+02 0.016 26.5 9.8 13 496-508 275-287 (299)
123 PF09680 Tiny_TM_bacill: Prote 21.3 79 0.0017 22.0 1.9 15 9-23 7-21 (24)
124 PF00170 bZIP_1: bZIP transcri 21.1 4.5E+02 0.0098 21.3 9.0 18 180-197 28-45 (64)
125 PRK07352 F0F1 ATP synthase sub 21.0 7.7E+02 0.017 23.9 16.2 43 146-188 46-88 (174)
126 PLN03086 PRLI-interacting fact 20.9 6E+02 0.013 30.0 10.0 7 597-603 415-421 (567)
127 KOG0250 DNA repair protein RAD 20.8 1.5E+03 0.032 29.0 13.5 86 139-227 355-440 (1074)
128 KOG4661 Hsp27-ERE-TATA-binding 20.8 9.1E+02 0.02 28.8 11.1 25 180-204 648-672 (940)
129 PF14193 DUF4315: Domain of un 20.7 2.7E+02 0.0059 24.6 5.7 17 182-198 5-21 (83)
130 PF04931 DNA_pol_phi: DNA poly 20.6 1.2E+02 0.0025 36.6 4.5 10 370-379 607-616 (784)
131 KOG4657 Uncharacterized conser 20.4 1E+03 0.022 25.1 14.5 11 501-511 227-237 (246)
132 PRK10698 phage shock protein P 20.2 9.4E+02 0.02 24.6 10.6 64 153-216 85-151 (222)
No 1
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-78 Score=642.82 Aligned_cols=411 Identities=35% Similarity=0.557 Sum_probs=316.3
Q ss_pred CCCCcccccccCCCCCceeeCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCcccccCccccCCCCC
Q 007310 41 YGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDC 120 (608)
Q Consensus 41 rGV~~~~~~~Y~~~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDC 120 (608)
-|++..+..||+ .+..|+|+||+..|+++++||+||||+||||||||+||||+.|||.|.||+|.+||+++||||||||
T Consensus 29 v~~~~~~~~~y~-as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC 107 (480)
T KOG2397|consen 29 VALSIENLYLYD-ASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC 107 (480)
T ss_pred cccccccccccc-cccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCccccc
Confidence 444555777887 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007310 121 CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 121 cDGSDE~~~~~~C~n~C~e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
||||||+.++|.|||+|.++|+++|..+++.+.+|+.|+++|++++.+++..+.+.+..+..|+.+++.|+..+.+|+..
T Consensus 108 CDgSDE~~Sgv~c~ntC~e~gR~~r~~~~~~~~~yk~G~e~R~~~i~e~k~~~~~~e~~l~~l~~e~~~l~~~~~~l~~~ 187 (480)
T KOG2397|consen 108 CDGSDEYLSGVDCPNTCIELGRAARIMLEKDAEIYKPGKEIREELLDESKTAREAFEAPLDKLSDELKVLEGDGEQLRST 187 (480)
T ss_pred ccCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcccccchhhhcchhhhhhHHhhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhhhhhhhhccCCCCCCCcccccccccccccccccccccc
Q 007310 201 KEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAEENAYSDDKPDDVRHDDKVGVLEEESFDQGKAE 280 (608)
Q Consensus 201 k~~~e~~e~~Ere~kek~~k~~~e~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~~~~~~~~ld~D~dg~~~~~ 280 (608)
+++++..++.++.+++.+++....+...+. +...|..+|...++ .++..++...+.+|.++||.++
T Consensus 188 ~e~~E~~~~~e~~~~~~~~~~~~~~~~~~~----~~~~~~e~d~~~~~--------~~~~tel~~~~~~d~~~~~~i~-- 253 (480)
T KOG2397|consen 188 KEKGEFDERKEKDQIQGQEELLKAARSRAQ----ADLVFDELDDDTNL--------LVELTELYTCTLLDCDKDGKIL-- 253 (480)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHhhhc----chhcCccccCcccc--------cccccccccCcccccccccccc--
Confidence 998888766666666666554433321111 45566666555544 8888888888888888888777
Q ss_pred cCCCCchhhhhhcccccCCCCCCCCcccchhhHhhhhhcccCCCCCCCCCCCCcccccCCCchhhhhhhhhhccCccccc
Q 007310 281 NVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENT 360 (608)
Q Consensus 281 ~~~~~~~~~~e~ea~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (608)
..|+ + .++
T Consensus 254 ----------~~E~-----k---------------------------------------------------------~~~ 261 (480)
T KOG2397|consen 254 ----------SFEI-----K---------------------------------------------------------RLK 261 (480)
T ss_pred ----------HHHH-----H---------------------------------------------------------Hhh
Confidence 3333 2 234
Q ss_pred chhhHHHhhhhhhhccccCcccccCCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCccccccccCCCCCCCCCCCCC
Q 007310 361 EELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEP 440 (608)
Q Consensus 361 ~~~~~~dl~~f~~~~w~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~~~~~~~~d~~~~d~~~~~~~~d~~ 440 (608)
+.+.++++..|....|.+++..+++..... +++.+ ++..... ...+..+++ ..+++
T Consensus 262 ~~~~~~~~~~~~~~~~s~l~~l~~t~~~~~------~~~~~-----~~~~~~~---------~~~~~~~~~-~~~~~--- 317 (480)
T KOG2397|consen 262 GELTQHDADSFRDTETSNLEHLYHTTPRPE------SPEQR-----EEEPTLR---------GVLNSPSEE-PRHDE--- 317 (480)
T ss_pred ccccccCccccccchhhhhHhhhccCCCcc------Ccccc-----ccccccc---------ccccCCccc-cchhh---
Confidence 455566666666667777766655432210 00000 0000000 001111110 01111
Q ss_pred ccccCCCccCCCCCCCCCCcccccccCCCCCCChhHHHHHHHHHHHHhhcccCCCcChHHHHHHHHHHHHHHHHHHHHHH
Q 007310 441 YREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQS 520 (608)
Q Consensus 441 ~eed~~~~~~~~~~~~~~~e~~~~~~~~~~~p~yde~~q~~~~~ll~~~n~f~~~~d~~~a~~aR~~~~eae~~l~~le~ 520 (608)
++..+++. ++.++. ..|+++ +|++||++|+++++.|++|++
T Consensus 318 ~~~~~d~~---------~~~~~~------~s~p~~------------------------~a~~ar~~~de~~~~~k~l~~ 358 (480)
T KOG2397|consen 318 EDINSDDE---------GDSGDT------DSPPSL------------------------QASEARNELDEAERKLKDLDE 358 (480)
T ss_pred hcccCCcc---------cccCCC------CCchHH------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 011110 123322 378999999999999999999
Q ss_pred HHHHHHhhhccccCCchhhhhccccceeeecCceeEeeccCCcccccCCCCcccccccccccCcceeeeecCCCcCCCCC
Q 007310 521 RISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGP 600 (608)
Q Consensus 521 ~I~~le~~L~~dfG~~~ef~~L~~qCfe~~~~eY~Y~lCpF~~~tQk~gg~~t~LG~w~~w~~~ys~m~Y~~G~~CWNGP 600 (608)
+|++++++++.+|| ..+|++|+|+||+.++++|||+||||+.|||++ +..|+|.+... ++|+|+||++|||||
T Consensus 359 ~i~~l~~~~~~~~g-~~e~~~~~~~c~~~~~~~Y~Y~~c~~~~~tq~~----~~~~~w~~~e~--~~m~y~nG~~CWnGP 431 (480)
T KOG2397|consen 359 EIRELEDELNGDFG-LLEFAALKGQCFDRELGEYTYTVCPFKPVTQKS----IYGGSWSGPEG--SVMKYENGQQCWNGP 431 (480)
T ss_pred HHHHHHHHhhcccc-HHHHHHHhcceeeeccCcEEEEEcccccccccc----cccccccCCcc--ceeeecCccccccCC
Confidence 99999999999999 999999999999999999999999999999994 44555777555 999999999999999
Q ss_pred CcceEEEC
Q 007310 601 DRSMKVTL 608 (608)
Q Consensus 601 ~RS~~V~L 608 (608)
+|||+|+|
T Consensus 432 ~RSa~v~v 439 (480)
T KOG2397|consen 432 NRSATVTV 439 (480)
T ss_pred CcceeEEE
Confidence 99999986
No 2
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=100.00 E-value=6.6e-50 Score=384.17 Aligned_cols=153 Identities=52% Similarity=0.953 Sum_probs=142.4
Q ss_pred CCCCCCCcccccccCC-CCCceeeCCCCcc-ccCCCccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCcccccCcccc
Q 007310 38 DPFYGISPQDENYYKT-SSNTIKCKDGSKK-FAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVND 115 (608)
Q Consensus 38 ~p~rGV~~~~~~~Y~~-~~~~F~C~dgs~~-Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~F~C~n~g~~~~~Ip~s~VcD 115 (608)
.++|||+|+++++|.+ .++.|+|++|+.. ||+++||||||||+||||||||+||+|++|||.|.||+|.+||+++|||
T Consensus 17 ~~~~GV~p~~~~~Y~~~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~VnD 96 (176)
T PF12999_consen 17 SRIRGVSPSDQHLYEPSENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRVND 96 (176)
T ss_pred CCCCCCCHHHHHHcCCCCCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhhcC
Confidence 3449999999999985 4678999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCCC---CCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 007310 116 GICD---CCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKG 192 (608)
Q Consensus 116 GicD---CcDGSDE~~~~~~C~n~C~e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~ 192 (608)
|||| ||||||| +.+.|||+|.++|+++|+.++++.++++.|+++|++||++|++++.++++++.+|+.+++..++
T Consensus 97 GICDy~~CCDGSDE--~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 97 GICDYDICCDGSDE--SGGKCPNTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred CcCcccccCCCCCC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999 9999999 5578999999999999999999999999999999999999999999999888888887765543
No 3
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=99.95 E-value=8.4e-29 Score=235.11 Aligned_cols=99 Identities=45% Similarity=0.916 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhhhccccceeeecCceeEeeccCCcccccCCCCcccccccccccC
Q 007310 504 VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFED 583 (608)
Q Consensus 504 aR~~~~eae~~l~~le~~I~~le~~L~~dfG~~~ef~~L~~qCfe~~~~eY~Y~lCpF~~~tQk~gg~~t~LG~w~~w~~ 583 (608)
++++|++++++|++|+++|+.+++.|+.||||+.+|++|+++||++..++|+|+||||++|+| +.|+||+|++|+
T Consensus 1 ~~~~~~~~e~~~~~l~~~i~~~~~~l~~dyG~d~~f~~l~~~c~~~~~~~Y~Y~~c~f~~v~Q----~~~~lG~~~~~~- 75 (154)
T PF13015_consen 1 LEKEIDEAERKLSDLESKIRELEDDLNKDYGPDDEFRALKGQCFEKKIGEYTYELCPFGNVTQ----DSTSLGSFKGWE- 75 (154)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHhCCeEEEeecCcEEEEEEECCCeee----ccccceeeccce-
Confidence 367899999999999999999999999999999999999999999999999999999999999 599999999998
Q ss_pred cceeeeecCCCcCCCCCCcceEEEC
Q 007310 584 SYHIMLFSNGDKCWNGPDRSMKVTL 608 (608)
Q Consensus 584 ~ys~m~Y~~G~~CWNGP~RS~~V~L 608 (608)
|.+|+|+||++|||||.|||+|.|
T Consensus 76 -~~~m~y~~G~~CwnGp~Rst~V~l 99 (154)
T PF13015_consen 76 -GSKMKYENGDKCWNGPQRSTTVHL 99 (154)
T ss_pred -eeEEEECCCcccCCCCCcCEEEEE
Confidence 889999999999999999999985
No 4
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=99.29 E-value=5.8e-12 Score=122.33 Aligned_cols=103 Identities=26% Similarity=0.433 Sum_probs=73.6
Q ss_pred CCceeccCCCCCCcccccCccccCCCCCCCCCCCCCC------CCCCchh---------------------hHHHHHHH-
Q 007310 93 NGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDG------KVKCPNT---------------------CWEAGKVA- 144 (608)
Q Consensus 93 ~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~~------~~~C~n~---------------------C~e~g~~~- 144 (608)
++.|+|.++.. +.||.++|||++|||.|||||+++ +|||.|. |+....+.
T Consensus 35 ~~~f~Cl~~~~--~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~ 112 (176)
T PF12999_consen 35 NGKFTCLDGSK--IVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESG 112 (176)
T ss_pred CCceEecCCCC--ceecHHHccCcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCC
Confidence 36799998743 349999999999999999999874 6788875 66666552
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007310 145 ---RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 145 ---r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
...+.+..+.+++-++.+.+.+..|.++|.++..+ .+..+.+++.++++|+..
T Consensus 113 ~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~---a~~~~~e~~~~l~~l~~e 168 (176)
T PF12999_consen 113 GKCPNTCAELGKEYREELEEEEEIYKEGLKIRQELIEE---AKKKREELEKKLEELEKE 168 (176)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 23377888888888888888888888887776653 333334444444444443
No 5
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=98.54 E-value=1e-07 Score=104.13 Aligned_cols=109 Identities=22% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCceeeCC---CCccccCCCccCCCCCCCCCCCCCCC-CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKD---GSKKFAKTQLNDDYCDCPDGTDEPGT-SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDG 129 (608)
Q Consensus 54 ~~~~F~C~d---gs~~Ip~s~vcDg~cDC~DGSDE~gt-~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~~ 129 (608)
.++.|+|.| ++..||.++||||+|||+|||||..+ ..||| .|...|.. +.+
T Consensus 79 pngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c~n---tC~e~gR~-------------------~r~--- 133 (480)
T KOG2397|consen 79 PNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDCPN---TCIELGRA-------------------ARI--- 133 (480)
T ss_pred CCCceeeeecCCCceeeechhccCcccccccCCCCccCCCCCcc---hHHHHHHH-------------------HHH---
Confidence 467899987 35789999999999999999999765 57887 77765421 010
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007310 130 KVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQL 197 (608)
Q Consensus 130 ~~~C~n~C~e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~l 197 (608)
.=......++.+.+.+.+.+.+|...|.+.... ...+..++.-|+.....|+..+++.
T Consensus 134 ------~~~~~~~~yk~G~e~R~~~i~e~k~~~~~~e~~----l~~l~~e~~~l~~~~~~l~~~~e~~ 191 (480)
T KOG2397|consen 134 ------MLEKDAEIYKPGKEIREELLDESKTAREAFEAP----LDKLSDELKVLEGDGEQLRSTKEKG 191 (480)
T ss_pred ------HHHHHHHHhcccHHHHHHHHhcccccchhhhcc----hhhhhhHHhhccchHHHHHHHHHHH
Confidence 123555678888888888888888666653333 3344445555666666666666633
No 6
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.45 E-value=1.3e-07 Score=70.15 Aligned_cols=34 Identities=56% Similarity=0.883 Sum_probs=31.6
Q ss_pred CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCC
Q 007310 90 ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 90 aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
.|+.+.|+|.++ .|||.++||||+.||.|||||.
T Consensus 2 ~C~~~~f~C~~~----~CI~~~~~CDg~~DC~dgsDE~ 35 (37)
T PF00057_consen 2 TCPPGEFRCGNG----QCIPKSWVCDGIPDCPDGSDEQ 35 (37)
T ss_dssp SSSTTEEEETTS----SEEEGGGTTSSSCSSSSSTTTS
T ss_pred cCcCCeeEcCCC----CEEChHHcCCCCCCCCCCcccc
Confidence 588999999997 4999999999999999999994
No 7
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.41 E-value=1.3e-07 Score=69.31 Aligned_cols=33 Identities=55% Similarity=0.797 Sum_probs=30.4
Q ss_pred CCCCceeccCCCCCCcccccCccccCCCCCCCCCCCC
Q 007310 91 CPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 91 C~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
|+.+.|+|.|+ .|||.+++|||+.||.|||||.
T Consensus 1 C~~~~f~C~~~----~Ci~~~~~CDg~~DC~dgsDE~ 33 (35)
T cd00112 1 CPPNEFRCANG----RCIPSSWVCDGEDDCGDGSDEE 33 (35)
T ss_pred CCCCeEEcCCC----CeeCHHHcCCCccCCCCCcccc
Confidence 67789999994 6999999999999999999995
No 8
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.30 E-value=3.5e-07 Score=66.96 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=29.4
Q ss_pred CCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 55 ~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
.+.|+|.+| .|||.+++|||+.||+|||||.+
T Consensus 3 ~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~ 34 (35)
T cd00112 3 PNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN 34 (35)
T ss_pred CCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence 468999997 79999999999999999999975
No 9
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.30 E-value=3.9e-07 Score=65.80 Aligned_cols=32 Identities=56% Similarity=0.964 Sum_probs=29.2
Q ss_pred CCCCceeccCCCCCCcccccCccccCCCCCCCCCCC
Q 007310 91 CPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDE 126 (608)
Q Consensus 91 C~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE 126 (608)
|+.+.|+|.++ .|||.+++|||+.||.|||||
T Consensus 2 C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNG----RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCC----CEECchhhCCCcCcCcCCCCC
Confidence 67679999975 599999999999999999998
No 10
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.26 E-value=5.4e-07 Score=66.93 Aligned_cols=33 Identities=33% Similarity=0.715 Sum_probs=29.9
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
..+.|+|.+|. |||.+++|||+.||.|||||.+
T Consensus 4 ~~~~f~C~~~~-CI~~~~~CDg~~DC~dgsDE~~ 36 (37)
T PF00057_consen 4 PPGEFRCGNGQ-CIPKSWVCDGIPDCPDGSDEQN 36 (37)
T ss_dssp STTEEEETTSS-EEEGGGTTSSSCSSSSSTTTSS
T ss_pred cCCeeEcCCCC-EEChHHcCCCCCCCCCCccccc
Confidence 35789999985 9999999999999999999965
No 11
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.07 E-value=2.3e-06 Score=61.77 Aligned_cols=29 Identities=31% Similarity=0.686 Sum_probs=27.0
Q ss_pred CceeeCCCCccccCCCccCCCCCCCCCCCC
Q 007310 56 NTIKCKDGSKKFAKTQLNDDYCDCPDGTDE 85 (608)
Q Consensus 56 ~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE 85 (608)
..|+|.+| .|||..++|||+.||+|||||
T Consensus 5 ~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 5 GEFQCDNG-RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence 48999987 599999999999999999998
No 12
>PF07915 PRKCSH: Glucosidase II beta subunit-like protein; InterPro: IPR012913 The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II (P14314 from SWISSPROT), which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyses the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing []. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum []. Mutations in the gene coding for PRKCSH have been found to be involved in the development of autosomal dominant polycystic liver disease (ADPLD), but the precise role the protein has in the pathogenesis of this disease is unknown []. ; PDB: 3AIH_A.
Probab=97.99 E-value=3.3e-06 Score=71.46 Aligned_cols=53 Identities=25% Similarity=0.500 Sum_probs=39.4
Q ss_pred ccceeeecCceeEeeccCCccccc----C--CCCccccccc-----cccc-----------------CcceeeeecCCCc
Q 007310 544 GHCFESKQNKYVYKVCPYKKATQE----E--GHSTTRLGSW-----DKFE-----------------DSYHIMLFSNGDK 595 (608)
Q Consensus 544 ~qCfe~~~~eY~Y~lCpF~~~tQk----~--gg~~t~LG~w-----~~w~-----------------~~ys~m~Y~~G~~ 595 (608)
|+|+....+-|+|++|+++.|.|- . ......||+| .+|. ..|-+|.|+||+.
T Consensus 1 ~~C~~~~~g~WtYe~C~g~~v~QfH~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~Gt~ 80 (81)
T PF07915_consen 1 GQCLYRSEGWWTYEFCYGKHVRQFHEEEKDKPGQEYSLGRFDNESHFSWRDSNVDSSPPTRKSEDGSQRYISQVYSNGTI 80 (81)
T ss_dssp --EEEEEETTEEEEEETTTEEEEE-EETTEE-S--EEEEEE--EEEEEEE----------S-------EEEEEEEEE-SB
T ss_pred CcceecCCCEEEEEECCCCcEEEecccCCCCCcceEEeeeEecccchhhhccccccCccccccccCCccEEEEEeCCCcC
Confidence 589999999999999999999997 1 4568889999 3341 2688999999999
Q ss_pred C
Q 007310 596 C 596 (608)
Q Consensus 596 C 596 (608)
|
T Consensus 81 C 81 (81)
T PF07915_consen 81 C 81 (81)
T ss_dssp -
T ss_pred C
Confidence 9
No 13
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.80 E-value=0.0014 Score=77.79 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=65.7
Q ss_pred CCCcccccccCCC---CCceeeCCCCccccCCCccCCCCCCCCCCCCC--C--CCCCCCCceeccCCCCCCcccccCccc
Q 007310 42 GISPQDENYYKTS---SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP--G--TSACPNGKFYCQNAGHSPLMIFSSKVN 114 (608)
Q Consensus 42 GV~~~~~~~Y~~~---~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~--g--t~aC~~~~F~C~n~g~~~~~Ip~s~Vc 114 (608)
|..+.....|-+. ...|.|..++.||+.+++|||.-||.|++||- . -.+|....|.|.++ .|++...+|
T Consensus 204 ~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~ 279 (877)
T KOG1215|consen 204 DYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG----DCSDRQKLC 279 (877)
T ss_pred ccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC----CCccceEEe
Confidence 4444455555322 36788987779999999999999999999994 2 23577789999776 599999999
Q ss_pred cCCCCCCCCCCCC
Q 007310 115 DGICDCCDGSDEY 127 (608)
Q Consensus 115 DGicDCcDGSDE~ 127 (608)
||.-||.||+||-
T Consensus 280 ~g~~d~pdg~de~ 292 (877)
T KOG1215|consen 280 DGDLDCPDGLDED 292 (877)
T ss_pred cCccCCCCccccc
Confidence 9999999999995
No 14
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.61 E-value=0.0013 Score=78.02 Aligned_cols=70 Identities=36% Similarity=0.620 Sum_probs=54.4
Q ss_pred CCceeeCCC-CccccCCCccCCCCCCCCCCCCCCCCC------------------------CC-----------------
Q 007310 55 SNTIKCKDG-SKKFAKTQLNDDYCDCPDGTDEPGTSA------------------------CP----------------- 92 (608)
Q Consensus 55 ~~~F~C~dg-s~~Ip~s~vcDg~cDC~DGSDE~gt~a------------------------C~----------------- 92 (608)
...|.|..+ .+|||..|.|||-.||.|||||-.+.. |.
T Consensus 140 ~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~ 219 (877)
T KOG1215|consen 140 LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDSR 219 (877)
T ss_pred CCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCcc
Confidence 457899842 379999999999999999999976431 11
Q ss_pred CCceeccCCCCCCcccccCccccCCCCCCCCCCCC
Q 007310 93 NGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 93 ~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
...|+|... ..||..+++|||..||.|++||-
T Consensus 220 ~~~~~c~g~---~~~i~~~~~~Dg~~dc~~~~de~ 251 (877)
T KOG1215|consen 220 IEVTRCDGS---SRCILISEVCDGPRDCVDGPDEG 251 (877)
T ss_pred eeEEEecCC---CcEEeehhccCCCcccccCCcCc
Confidence 133455543 27999999999999999999983
No 15
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.49 E-value=9.7 Score=37.99 Aligned_cols=37 Identities=38% Similarity=0.459 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 171 QNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKA 207 (608)
Q Consensus 171 ~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~~ 207 (608)
..+.++..++..|+.++..|+..+..++...+.+++.
T Consensus 120 ~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 120 QGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888888877766653
No 16
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=85.11 E-value=17 Score=45.01 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCchhhhhccc-cceeeecCceeEeeccCCcccc
Q 007310 501 AARVRKEYDESSDKLSKIQSRISSLTQKLK-HEFGPEKEFYSFYG-HCFESKQNKYVYKVCPYKKATQ 566 (608)
Q Consensus 501 a~~aR~~~~eae~~l~~le~~I~~le~~L~-~dfG~~~ef~~L~~-qCfe~~~~eY~Y~lCpF~~~tQ 566 (608)
+.+-|.=+-+..+-|.+.+..|-.+.+.-+ ..|-+-..|-.--+ +--++.-++-...+|+-+...-
T Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1021)
T PTZ00266 905 LEKDREYLLEKRKMLMEKEKGIYDRLRHNNDYAYAPARAFDRGEDKKPNELDRRNRSLSMCMNEQEKR 972 (1021)
T ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHhccCcccchhHHHhhhccccCcchhccccchhhhhhChHhhc
Confidence 344444444444444444444444322211 13444444433211 1333334444456777655443
No 17
>KOG3394 consensus Protein OS-9 [General function prediction only]
Probab=85.07 E-value=0.82 Score=51.61 Aligned_cols=89 Identities=22% Similarity=0.390 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhhccccCCchhhhhcccc--ceeeecCceeEeeccCCcccccC----CC-----Cccccccccccc----
Q 007310 518 IQSRISSLTQKLKHEFGPEKEFYSFYGH--CFESKQNKYVYKVCPYKKATQEE----GH-----STTRLGSWDKFE---- 582 (608)
Q Consensus 518 le~~I~~le~~L~~dfG~~~ef~~L~~q--Cfe~~~~eY~Y~lCpF~~~tQk~----gg-----~~t~LG~w~~w~---- 582 (608)
++....+-.+.+..-.|+ ....+|+.. |.-....=++|++|.-..|-|-. ++ ..--||.|.+=.
T Consensus 80 ~e~~~~E~~~~~k~~~g~-eLl~pl~~~~~C~~r~~~yWtYe~ChG~hVrQyH~E~~~~~~i~~qe~yLg~~~~~~~~~~ 158 (502)
T KOG3394|consen 80 IEHSKEEETKDLKEPQGD-ELLQPLYNDKLCLYRGEGYWTYEYCHGQHVRQYHEEPETKTGIVNQEFYLGNFLGKFTASL 158 (502)
T ss_pred cccccccchhhhcCCChh-hhhhhhhhcchheeeccceEEEEeeCCeeeeeeeccccccCcceeeeeeeeeccccchhhh
Confidence 344444444444445454 444566655 77666667899999999998873 22 123388876531
Q ss_pred ------------CcceeeeecCCCcC-CCCCCcceEEE
Q 007310 583 ------------DSYHIMLFSNGDKC-WNGPDRSMKVT 607 (608)
Q Consensus 583 ------------~~ys~m~Y~~G~~C-WNGP~RS~~V~ 607 (608)
..|-.+.|+||+.| =+|-+|.+.|+
T Consensus 159 ke~~~~~~~~~~~~Y~s~ty~nGT~CDltg~PR~~~Vr 196 (502)
T KOG3394|consen 159 KEREAEASTDDRKPYHSETYGNGTMCDLTGRPRMVEVR 196 (502)
T ss_pred hhhhhhhhhccccceeEEEecCCCccccCCCCceEEEE
Confidence 16889999999999 57899999886
No 18
>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.46 E-value=1.9 Score=52.35 Aligned_cols=72 Identities=29% Similarity=0.407 Sum_probs=59.1
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCCC------CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGT------SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt------~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
+...|.|+++ ++.-.-++||...+|.++|+..++ +.|..+.++|.+.- ++-+.+..|||..||.|+++|+
T Consensus 33 ~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~---~~~~~~~~~~g~~~~~~~~~~~ 108 (964)
T KOG3509|consen 33 SPNEFKCNNP-RCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRL---RCNPQSFQCDGTNDCKDGSDEV 108 (964)
T ss_pred CcchhccCCc-cccCchhhhccccccCCCCCcCCccccccccccCCcccccccch---hcCCccccccCCCCCCccchhc
Confidence 4678889888 577777899999999999977664 23666889999862 6778899999999999999998
Q ss_pred CC
Q 007310 128 DG 129 (608)
Q Consensus 128 ~~ 129 (608)
..
T Consensus 109 ~~ 110 (964)
T KOG3509|consen 109 GC 110 (964)
T ss_pred cc
Confidence 73
No 19
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=76.62 E-value=94 Score=31.80 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=7.2
Q ss_pred CCCCCchhhHHHH
Q 007310 129 GKVKCPNTCWEAG 141 (608)
Q Consensus 129 ~~~~C~n~C~e~g 141 (608)
.+|+|++ |....
T Consensus 10 ~~~~C~~-C~~~~ 21 (302)
T PF10186_consen 10 RRFYCAN-CVNNR 21 (302)
T ss_pred CCeECHH-HHHHH
Confidence 4578874 55543
No 20
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.62 E-value=1e+02 Score=31.61 Aligned_cols=8 Identities=50% Similarity=1.327 Sum_probs=5.1
Q ss_pred CCceeccC
Q 007310 93 NGKFYCQN 100 (608)
Q Consensus 93 ~~~F~C~n 100 (608)
...|||.+
T Consensus 9 ~~~~~C~~ 16 (302)
T PF10186_consen 9 RRRFYCAN 16 (302)
T ss_pred CCCeECHH
Confidence 35677765
No 21
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=72.71 E-value=60 Score=38.51 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=4.4
Q ss_pred Hhhhhhhhc
Q 007310 367 ELGRLVASR 375 (608)
Q Consensus 367 dl~~f~~~~ 375 (608)
-|-.|-.++
T Consensus 482 KlLqF~~Nr 490 (811)
T KOG4364|consen 482 KLLQFDKNR 490 (811)
T ss_pred HHhhhcccc
Confidence 455555444
No 22
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=69.52 E-value=1.1e+02 Score=31.47 Aligned_cols=54 Identities=26% Similarity=0.243 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 159 VLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQ 214 (608)
Q Consensus 159 ~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~~e~~Ere~ 214 (608)
+-+|+.+... ..+.....+.+.|+.+++.|+.++.+++...+..++..+.+|+-
T Consensus 175 fGmRKALqae--~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~i 228 (259)
T KOG4001|consen 175 FGMRKALQAE--NEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREI 228 (259)
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3345555433 23334455677888888999999999988877777754444444
No 23
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.97 E-value=1.3e+02 Score=36.45 Aligned_cols=6 Identities=67% Similarity=1.425 Sum_probs=2.8
Q ss_pred EeeccC
Q 007310 556 YKVCPY 561 (608)
Q Consensus 556 Y~lCpF 561 (608)
|.+-|+
T Consensus 909 ya~~~~ 914 (1118)
T KOG1029|consen 909 YAVYPY 914 (1118)
T ss_pred EEEecc
Confidence 444443
No 24
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.82 E-value=90 Score=37.73 Aligned_cols=57 Identities=16% Similarity=0.090 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007310 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQI 204 (608)
Q Consensus 148 ~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~ 204 (608)
.....+++..+...-.++|++..+.+.+++.++.+++..+.+++.+.++++..++..
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555555555555555555555555554444433
No 25
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.90 E-value=94 Score=37.54 Aligned_cols=53 Identities=19% Similarity=0.050 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007310 152 IATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQI 204 (608)
Q Consensus 152 ~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~ 204 (608)
.+++......-.++|++-...+.+++.++.+++..+.+++...++|+...++.
T Consensus 503 ~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555544444444444444444333
No 26
>PRK11637 AmiB activator; Provisional
Probab=65.36 E-value=1.9e+02 Score=32.07 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007310 162 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 162 R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
++.++.+-...+.++.....+|+..+..++.++.+++..
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~ 206 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQ 206 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444333333433333333333333333
No 27
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.11 E-value=1.6e+02 Score=35.82 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.2
Q ss_pred eEeeccCCc
Q 007310 555 VYKVCPYKK 563 (608)
Q Consensus 555 ~Y~lCpF~~ 563 (608)
.|=-|||.+
T Consensus 1150 RyFri~F~~ 1158 (1259)
T KOG0163|consen 1150 RYFRIPFMR 1158 (1259)
T ss_pred heeecceec
Confidence 344455544
No 28
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.73 E-value=1.9e+02 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=12.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007310 174 VKDEAELSNLKNEEKILKGLVQQLKERKEQ 203 (608)
Q Consensus 174 ~e~~~~l~~Lk~e~~~le~~ve~le~~k~~ 203 (608)
.+.++.+.+++..+..++.+.++++..+..
T Consensus 532 ~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 532 EHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444443
No 29
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=61.68 E-value=2.8 Score=38.54 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=29.1
Q ss_pred cCceeEeeccCCcccccC---CCCcccccccccccCcceeeeecCCCcCCCCCCcceEEE
Q 007310 551 QNKYVYKVCPYKKATQEE---GHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGPDRSMKVT 607 (608)
Q Consensus 551 ~~eY~Y~lCpF~~~tQk~---gg~~t~LG~w~~w~~~ys~m~Y~~G~~CWNGP~RS~~V~ 607 (608)
..+|+| --|.+-.|-+ .|+..+||.=+.+-.+ ==+-..||||-+|-+-|.
T Consensus 40 ~pNYvf--~~FEnG~tvsv~~~gs~~kI~~~Dd~r~R-----DLgTHPcwnG~nRk~Lvk 92 (121)
T PF06919_consen 40 TPNYVF--MRFENGITVSVTYNGSIFKIGLDDDHRER-----DLGTHPCWNGVNRKLLVK 92 (121)
T ss_pred CCCEEE--EEecCCCEEEEEecCcEEEEEecCchhhc-----ccCCCcCccCcchhhHHH
Confidence 455666 4566555553 4556666655543110 112358999999987664
No 30
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=60.78 E-value=61 Score=39.19 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=11.2
Q ss_pred eecCceeEeeccCCcc
Q 007310 549 SKQNKYVYKVCPYKKA 564 (608)
Q Consensus 549 ~~~~eY~Y~lCpF~~~ 564 (608)
..++=|-|+-||+..+
T Consensus 601 KiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 601 KIDRLYGWKSCPNAPI 616 (1064)
T ss_pred hhhhhcccccCCCchH
Confidence 3446788888887654
No 31
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.77 E-value=1.2e+02 Score=36.84 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=14.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007310 173 LVKDEAELSNLKNEEKILKGLVQQLKERKEQI 204 (608)
Q Consensus 173 r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~ 204 (608)
+.+.++.+.+++..+..++.+.++++..+..+
T Consensus 536 ~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 536 AEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444455555554444433
No 32
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.06 E-value=44 Score=27.63 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=9.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 007310 176 DEAELSNLKNEEKILKGLVQQL 197 (608)
Q Consensus 176 ~~~~l~~Lk~e~~~le~~ve~l 197 (608)
+++++..++.+...|+.+++.|
T Consensus 29 l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 29 LQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444
No 33
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=56.51 E-value=1.1e+02 Score=29.43 Aligned_cols=21 Identities=24% Similarity=0.765 Sum_probs=13.6
Q ss_pred CCCCCCCCCCCCCCchhhHHHHH
Q 007310 120 CCDGSDEYDGKVKCPNTCWEAGK 142 (608)
Q Consensus 120 CcDGSDE~~~~~~C~n~C~e~g~ 142 (608)
||=..++++ .+||.+|.=.+-
T Consensus 6 c~~~de~~G--~~CPTgC~i~~~ 26 (146)
T PF08702_consen 6 CCCADEDFG--SYCPTGCGIQDF 26 (146)
T ss_dssp EECSSTTTT--EEEE-HHHHHHH
T ss_pred ccccCcccc--CCCCCcchHHHH
Confidence 444445555 589999988775
No 34
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=55.44 E-value=2.9e+02 Score=29.51 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=28.8
Q ss_pred CccCCCCCCCCCCCCC---------------CCCCCCCCceeccCC-CCCCcccccCcccc----CCCCCCCCC
Q 007310 71 QLNDDYCDCPDGTDEP---------------GTSACPNGKFYCQNA-GHSPLMIFSSKVND----GICDCCDGS 124 (608)
Q Consensus 71 ~vcDg~cDC~DGSDE~---------------gt~aC~~~~F~C~n~-g~~~~~Ip~s~VcD----GicDCcDGS 124 (608)
.+..+.-+|.=|+-+. .+|. .+-+|.|... +....+|-++-..| -|-||-.+-
T Consensus 55 ~~~~~~k~C~iG~g~~k~mtn~t~mk~IeeVq~S~-~~LrlTC~~~~~s~Gv~l~fnGlddepG~~IVDC~~~~ 127 (264)
T PF07246_consen 55 MMPGFNKKCRIGSGDLKEMTNKTMMKIIEEVQLSI-SNLRLTCIGSLGSEGVSLDFNGLDDEPGHNIVDCDTFK 127 (264)
T ss_pred cCCccccCcccCCcchhhcchhhHHHHHHHHhccc-ccceeeecCCCCcceeEEecCCCCCCCCCeeEecCCCC
Confidence 3667678898884332 1222 3478999743 33345555544432 133566543
No 35
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=55.01 E-value=35 Score=36.60 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007310 158 GVLLRKKEIEQAKQNLVKDEAELSNL 183 (608)
Q Consensus 158 G~~~R~elie~gk~~r~e~~~~l~~L 183 (608)
-++++.+...++.+.|++..+++.+.
T Consensus 249 ~~~l~~e~~~K~~k~R~~~~~~~~K~ 274 (321)
T PF07946_consen 249 RFKLSPEAKKKAKKNREEEEEKILKE 274 (321)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777776655544333
No 36
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=53.60 E-value=32 Score=31.89 Aligned_cols=45 Identities=13% Similarity=0.356 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHhhcccCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 474 WLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRI 522 (608)
Q Consensus 474 yde~~q~~~~~ll~~~n~f~~~~d~~~a~~aR~~~~eae~~l~~le~~I 522 (608)
+.+++++.++.+++..++|.. +++...+..+++.+++|++|++++
T Consensus 62 ~e~K~~r~i~~ml~~~~~~r~----~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 62 LEEKIPRKIEEMLSDLEVARQ----SEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHhhhHHHHHHHhhcccccc----chHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788889999988887755 346788888988888888888775
No 37
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=53.37 E-value=2.2e+02 Score=27.66 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
...+.+|.+.+..++..=.+...++..++.+.+..+.+.+.+..
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~ 91 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAE 91 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777777777777777777777777776666666544
No 38
>PRK12704 phosphodiesterase; Provisional
Probab=52.46 E-value=4.3e+02 Score=30.62 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=7.8
Q ss_pred CcChHHH-HHHHHHHH
Q 007310 495 PVDKSDA-ARVRKEYD 509 (608)
Q Consensus 495 ~~d~~~a-~~aR~~~~ 509 (608)
|..+.++ .++++.++
T Consensus 281 P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 281 PARIEEMVEKARKEVD 296 (520)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4445443 55666554
No 39
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=52.06 E-value=4.1e+02 Score=31.22 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=8.5
Q ss_pred ccCCchhhhhccccce
Q 007310 532 EFGPEKEFYSFYGHCF 547 (608)
Q Consensus 532 dfG~~~ef~~L~~qCf 547 (608)
++|. --|++|+..|-
T Consensus 422 dv~d-lllA~l~KkCP 436 (591)
T KOG2412|consen 422 DVGD-LLLARLHKKCP 436 (591)
T ss_pred hHHH-HHHHHHHhcCC
Confidence 4443 45666666664
No 40
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=51.92 E-value=3e+02 Score=28.66 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIE 205 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e 205 (608)
+..+..++..+..-.+..+.-+.+.......+..++..++.+...|+....+++..+..++
T Consensus 7 k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 7 KQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555555555555555555555544444
No 41
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=50.82 E-value=2.8e+02 Score=28.02 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 144 ARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 144 ~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
....+..|.+.+...+..=.+..+++..+..+.+.++.+.+.+..
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~ 117 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAK 117 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666677777777776666665544
No 42
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=50.64 E-value=2.6e+02 Score=32.29 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=6.5
Q ss_pred CCCCCcccccC
Q 007310 101 AGHSPLMIFSS 111 (608)
Q Consensus 101 ~g~~~~~Ip~s 111 (608)
.|..-+.||..
T Consensus 151 pG~tqI~IPL~ 161 (489)
T PF05262_consen 151 PGKTQIVIPLS 161 (489)
T ss_pred CCCceEEEecc
Confidence 44455667765
No 43
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=50.43 E-value=1.9e+02 Score=25.97 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007310 174 VKDEAELSNLKNEEKILKGLVQQLKERK 201 (608)
Q Consensus 174 ~e~~~~l~~Lk~e~~~le~~ve~le~~k 201 (608)
..+++++.+|+.++..+...++.|+...
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888888888777777754
No 44
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=50.13 E-value=1.4e+02 Score=36.28 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007310 155 YQEGVLLRKKEIEQAKQ 171 (608)
Q Consensus 155 ~~~G~~~R~elie~gk~ 171 (608)
...|++..++++++.+.
T Consensus 212 ~~Kgv~~~qe~La~~qe 228 (1064)
T KOG1144|consen 212 KPKGVRAMQEALAKRQE 228 (1064)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 34455555555544333
No 45
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=49.20 E-value=2.9e+02 Score=31.93 Aligned_cols=6 Identities=0% Similarity=-0.169 Sum_probs=3.8
Q ss_pred ccccCC
Q 007310 65 KKFAKT 70 (608)
Q Consensus 65 ~~Ip~s 70 (608)
..||..
T Consensus 156 I~IPL~ 161 (489)
T PF05262_consen 156 IVIPLS 161 (489)
T ss_pred EEEecc
Confidence 567765
No 46
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=48.24 E-value=2.3e+02 Score=34.14 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 159 VLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIE 205 (608)
Q Consensus 159 ~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e 205 (608)
..+|.+++.+..+.+.+++.++..|+..+...-..+.+++..++.+.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777888888777777777666666666666555554
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=48.14 E-value=3.8e+02 Score=32.30 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=6.4
Q ss_pred hhHHHhhhhhhhh
Q 007310 236 SGEKAMQEKNKAE 248 (608)
Q Consensus 236 ~~~~~~~d~~~~~ 248 (608)
++....+|.|.++
T Consensus 612 aEtriKldLfsaL 624 (697)
T PF09726_consen 612 AETRIKLDLFSAL 624 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445555544
No 48
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=47.03 E-value=5.4e+02 Score=30.25 Aligned_cols=9 Identities=44% Similarity=0.955 Sum_probs=5.5
Q ss_pred ceeEeeccC
Q 007310 553 KYVYKVCPY 561 (608)
Q Consensus 553 eY~Y~lCpF 561 (608)
.|.|+-|||
T Consensus 429 A~l~KkCP~ 437 (591)
T KOG2412|consen 429 ARLHKKCPY 437 (591)
T ss_pred HHHHhcCCc
Confidence 356677774
No 49
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.03 E-value=3.3e+02 Score=30.89 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=7.7
Q ss_pred HHhHHHHHHHHHHHHHHHHH
Q 007310 180 LSNLKNEEKILKGLVQQLKE 199 (608)
Q Consensus 180 l~~Lk~e~~~le~~ve~le~ 199 (608)
+.+|..++...+..+++|+.
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~ 231 (420)
T COG4942 212 LAQLNSELSADQKKLEELRA 231 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333
No 50
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=45.49 E-value=7.9 Score=25.12 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 007310 8 FRFTYAIVLSLLWVSS 23 (608)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (608)
|.|+.+++++|++++.
T Consensus 2 Mk~vIIlvvLLliSf~ 17 (19)
T PF13956_consen 2 MKLVIILVVLLLISFP 17 (19)
T ss_pred ceehHHHHHHHhcccc
Confidence 5666777777777554
No 51
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=44.91 E-value=1.3e+02 Score=31.79 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007310 142 KVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQL 197 (608)
Q Consensus 142 ~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~l 197 (608)
.+|++.+++-...++.-...|+....+.......+.++...|+.++..|+.++..+
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555444455554444444443333333333333333333333333333333
No 52
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.76 E-value=5.7e+02 Score=30.83 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007310 499 SDAARVRKEYDESSDKLSKIQSRISSLTQKLKH 531 (608)
Q Consensus 499 ~~a~~aR~~~~eae~~l~~le~~I~~le~~L~~ 531 (608)
.++-.||.+++-++..|+.-+.+|.+|+.+|..
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999999999999875
No 53
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=43.31 E-value=3e+02 Score=26.28 Aligned_cols=43 Identities=16% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 146 DKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 146 ~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
..+.+|.+.+...+..=.+.-.++..++.+.+.++.+.+.+..
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~ 91 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQ 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666666665555555666666666666665555443
No 54
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=42.79 E-value=3.9e+02 Score=30.38 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=6.1
Q ss_pred CcccccCccccCC
Q 007310 105 PLMIFSSKVNDGI 117 (608)
Q Consensus 105 ~~~Ip~s~VcDGi 117 (608)
|.-|-.+|+..++
T Consensus 248 PaallLYWv~snl 260 (429)
T PRK00247 248 PTAIALYWVANNL 260 (429)
T ss_pred hHHHHHHHHHhhH
Confidence 4444445554443
No 55
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=42.42 E-value=3.4e+02 Score=26.61 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 146 DKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 146 ~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
..+.+|.+.+...+.-=.+...++..++.+.++++...+.+..
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~ 93 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEAD 93 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555556655555555556666666666666555555443
No 56
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=42.23 E-value=4.2e+02 Score=27.60 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 147 KLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 147 ~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
.+.+|.+.+..++.-=.+..+++.+.+.+.+.++..++.+..
T Consensus 33 ~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (250)
T PRK14474 33 VMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRA 74 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555566666666666666555443
No 57
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=41.82 E-value=5.6e+02 Score=28.95 Aligned_cols=12 Identities=33% Similarity=0.781 Sum_probs=8.3
Q ss_pred hhhhhhhccccC
Q 007310 368 LGRLVASRWTGE 379 (608)
Q Consensus 368 l~~f~~~~w~~~ 379 (608)
+...+..+|...
T Consensus 253 ~~~~~~~rws~~ 264 (445)
T PRK13428 253 LRTAVSQRWSAN 264 (445)
T ss_pred HHHHHhCccCcc
Confidence 556777888664
No 58
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=41.81 E-value=1.2e+02 Score=28.76 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 169 AKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIE 205 (608)
Q Consensus 169 gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e 205 (608)
+..-|++++++|+.|+.+.+.++.....|....+-+|
T Consensus 23 WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 23 WEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666666655555443333
No 59
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=41.34 E-value=1.1e+02 Score=29.37 Aligned_cols=58 Identities=21% Similarity=0.433 Sum_probs=27.0
Q ss_pred CCceeeCCCCccccCCCccCCCCCCCC-CCCCCCCC----CCCCCceeccCCCCCCcccc--cCccccCCCC
Q 007310 55 SNTIKCKDGSKKFAKTQLNDDYCDCPD-GTDEPGTS----ACPNGKFYCQNAGHSPLMIF--SSKVNDGICD 119 (608)
Q Consensus 55 ~~~F~C~dgs~~Ip~s~vcDg~cDC~D-GSDE~gt~----aC~~~~F~C~n~g~~~~~Ip--~s~VcDGicD 119 (608)
.....|..+...-|...-|.+ .|-| ++|..++. .|+.+..-| ++ .|+. .+..+=|-|.
T Consensus 55 ~~~~iC~~~~~~~~~~~CC~~--~Cvdv~~d~~nCG~Cg~~C~~g~~cC-~G----~Cvd~~~d~~~CG~Cg 119 (136)
T PF04885_consen 55 KDPWICSAKGKCSPGPTCCNN--KCVDVSSDRNNCGACGNKCPYGQTCC-GG----QCVDLNSDPRHCGACG 119 (136)
T ss_pred CCchhhcCCCCCCCCCcccCC--cCCccCCCccccHhhcCCCCCCceec-CC----EeECCCCCccccCCCC
Confidence 345556654322233334443 4665 55765543 456554333 33 3433 3345555553
No 60
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=40.66 E-value=20 Score=47.70 Aligned_cols=57 Identities=26% Similarity=0.599 Sum_probs=33.1
Q ss_pred CceeeCCCCccccCCCccCCC-CCCCCCCCC----CCCCCCC-CCceeccCCCCCCcccccCccccCCCCCCC
Q 007310 56 NTIKCKDGSKKFAKTQLNDDY-CDCPDGTDE----PGTSACP-NGKFYCQNAGHSPLMIFSSKVNDGICDCCD 122 (608)
Q Consensus 56 ~~F~C~dgs~~Ip~s~vcDg~-cDC~DGSDE----~gt~aC~-~~~F~C~n~g~~~~~Ip~s~VcDGicDCcD 122 (608)
..-.|.+|..|++. ---|| |-|+----- .+--+|. | -|.++| .|||.. |+-+|.|..
T Consensus 3868 ~~npCqhgG~C~~~--~~ggy~CkCpsqysG~~CEi~~epC~sn---PC~~Gg---tCip~~--n~f~CnC~~ 3930 (4289)
T KOG1219|consen 3868 NDNPCQHGGTCISQ--PKGGYKCKCPSQYSGNHCEIDLEPCASN---PCLTGG---TCIPFY--NGFLCNCPN 3930 (4289)
T ss_pred ccCcccCCCEecCC--CCCceEEeCcccccCcccccccccccCC---CCCCCC---EEEecC--CCeeEeCCC
Confidence 34458887788876 33455 888753322 2223453 3 577776 588764 445555543
No 61
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=40.04 E-value=3.7e+02 Score=26.31 Aligned_cols=40 Identities=30% Similarity=0.283 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007310 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEE 187 (608)
Q Consensus 148 ~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~ 187 (608)
+.+|...+..++..-.+.-+++..++++.+..|.+.+.+-
T Consensus 33 LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA 72 (154)
T PRK06568 33 LDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLR 72 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666665555555556666666666555555444
No 62
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.81 E-value=3.3e+02 Score=29.00 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=8.2
Q ss_pred cCCCCCCCCCCcccc
Q 007310 34 SLLNDPFYGISPQDE 48 (608)
Q Consensus 34 ~~~~~p~rGV~~~~~ 48 (608)
....++..|++|.-+
T Consensus 33 ~l~a~~e~a~~~~aq 47 (299)
T KOG3054|consen 33 MLLAREEVAEPPQAQ 47 (299)
T ss_pred hhhhhhhccCCcccC
Confidence 344556567666543
No 63
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.56 E-value=3.8e+02 Score=28.23 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007310 173 LVKDEAELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 173 r~e~~~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
+.+++.++.++++++.+|-...++|+.+
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 64
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.54 E-value=3.8e+02 Score=26.03 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
...+.+|.+.+..++.-=.+..+++..++.+.+.++...+.+..
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666666666666666666677777776666666665544
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.81 E-value=4.5e+02 Score=26.82 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007310 171 QNLVKDEAELSNLKNEEKILKGLVQQLKE 199 (608)
Q Consensus 171 ~~r~e~~~~l~~Lk~e~~~le~~ve~le~ 199 (608)
....+++.++..+...+..|+.+..+|+.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 66
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=36.16 E-value=4.7e+02 Score=28.18 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=8.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 007310 179 ELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 179 ~l~~Lk~e~~~le~~ve~le~~ 200 (608)
+|.+|+.+...+..++..|+.+
T Consensus 65 eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 67
>smart00030 CLb CLUSTERIN Beta chain.
Probab=35.97 E-value=4.6e+02 Score=27.03 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007310 138 WEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNL 183 (608)
Q Consensus 138 ~e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~L 183 (608)
.++..+-..-+.+.++-+-.|++..+.++++..+.++.+-..|++-
T Consensus 10 k~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~ 55 (206)
T smart00030 10 QEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEA 55 (206)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3343333444566666677788887777777666655554443333
No 68
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.96 E-value=5e+02 Score=26.69 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 147 KLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 147 ~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
.+.+|.+.+..++.-=.+...++..++.+.+.++.+.+.+..
T Consensus 33 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 33 AMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555566666666666665555443
No 69
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.69 E-value=4.3e+02 Score=25.77 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
...+.+|.+.+...+.-=.+..+++..++.+.+.++...+.+..
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 87 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQ 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666556666666666666666666665544
No 70
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=35.21 E-value=1.1e+02 Score=25.49 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007310 174 VKDEAELSNLKNEEKILKGLVQQLKERK 201 (608)
Q Consensus 174 ~e~~~~l~~Lk~e~~~le~~ve~le~~k 201 (608)
.++..+|..|+.||..++..+...++.+
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444444444433
No 71
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.16 E-value=4e+02 Score=28.76 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 007310 178 AELSNLKNEEKILKGLVQQLKERKE 202 (608)
Q Consensus 178 ~~l~~Lk~e~~~le~~ve~le~~k~ 202 (608)
.++..|+.+...+..++.+|+.+.+
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~ 74 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKERE 74 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 72
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=34.67 E-value=2.5e+02 Score=31.97 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 148 ~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
..+.++.+-.|++.-+.|+++-.+....+-+.|++.+++++
T Consensus 14 vdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~Ke 54 (436)
T PF01093_consen 14 VDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKE 54 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44555666678888888888877777776665555555444
No 73
>PRK10040 hypothetical protein; Provisional
Probab=34.35 E-value=60 Score=26.29 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=9.2
Q ss_pred CCCceeeCCCC
Q 007310 54 SSNTIKCKDGS 64 (608)
Q Consensus 54 ~~~~F~C~dgs 64 (608)
..+.|.|+||+
T Consensus 32 ~g~~FvCnDGS 42 (52)
T PRK10040 32 TGGKFVCNDGS 42 (52)
T ss_pred cCCEEEeCCCc
Confidence 46889999996
No 74
>PRK00106 hypothetical protein; Provisional
Probab=34.29 E-value=8.2e+02 Score=28.65 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 007310 516 SKIQSRISSLTQK 528 (608)
Q Consensus 516 ~~le~~I~~le~~ 528 (608)
.+++..|.+.-+.
T Consensus 308 ~e~~~~i~~~Ge~ 320 (535)
T PRK00106 308 LEMDNRIREYGEA 320 (535)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 75
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.15 E-value=1.4e+02 Score=24.60 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=20.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007310 173 LVKDEAELSNLKNEEKILKGLVQQLKERKEQI 204 (608)
Q Consensus 173 r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~ 204 (608)
...+..++..|+.++..++...+.|+...+..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566777777777777777766665544
No 76
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=33.21 E-value=1.6e+02 Score=26.35 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=9.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 007310 178 AELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 178 ~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
+++...+.++...+..+..|+..
T Consensus 8 ~e~e~~~~kl~q~e~~~k~L~nr 30 (86)
T PF12958_consen 8 AEIEKAEKKLEQAEHKIKQLENR 30 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443334444444443
No 77
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=32.91 E-value=5.2e+02 Score=25.98 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=17.6
Q ss_pred cccccCccccCCCCCCCCCCCC
Q 007310 106 LMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 106 ~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
..||....|..+-||...-.|.
T Consensus 57 l~ip~gl~N~S~~DC~k~dPe~ 78 (176)
T PF06364_consen 57 LSIPPGLSNLSFTDCGKHDPEV 78 (176)
T ss_pred HHhcccccccchHhhccCChhh
Confidence 6788888999999998765553
No 78
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.83 E-value=3.5e+02 Score=23.95 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 169 AKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIE 205 (608)
Q Consensus 169 gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e 205 (608)
|...+.-++-++.+|+.+...|...++.++..+..+.
T Consensus 16 AvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~ 52 (79)
T PRK15422 16 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3334444444555555555555555555544444444
No 79
>PHA01750 hypothetical protein
Probab=32.66 E-value=1.8e+02 Score=24.99 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007310 499 SDAARVRKEYDESSDKLSKIQSRISSLTQKLK 530 (608)
Q Consensus 499 ~~a~~aR~~~~eae~~l~~le~~I~~le~~L~ 530 (608)
.++..+|.++++...+.-++++++.++.+++.
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 56788899999988888899999999988775
No 80
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=3.5e+02 Score=23.58 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 168 QAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIE 205 (608)
Q Consensus 168 ~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e 205 (608)
+|...+.-++-++.+|+.+...|...+..++...++.+
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 34444445555666666666666666665555544444
No 81
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=31.52 E-value=1.5e+02 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=14.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 177 EAELSNLKNEEKILKGLVQQLKERKEQIE 205 (608)
Q Consensus 177 ~~~l~~Lk~e~~~le~~ve~le~~k~~~e 205 (608)
.++|.+.+..+.+++..+..|+..|.++|
T Consensus 7 ~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 7 RAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444433
No 82
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=31.30 E-value=7.2e+02 Score=28.45 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 137 CWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQN 172 (608)
Q Consensus 137 C~e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~ 172 (608)
|.+-....+..+....+.+..-...-+++++.....
T Consensus 137 C~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~ 172 (447)
T KOG2751|consen 137 CEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQ 172 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444445555555555555555555555554443
No 83
>smart00030 CLb CLUSTERIN Beta chain.
Probab=31.10 E-value=6.1e+02 Score=26.18 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 150 KKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIE 205 (608)
Q Consensus 150 ~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e 205 (608)
...++-..|-+--.+-|+.|.....+++.-+++-..+.+.|-..+++.+..|++|-
T Consensus 8 ~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAl 63 (206)
T smart00030 8 ELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEAL 63 (206)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667877778888888888777776666666666555555555444444443
No 84
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.85 E-value=4.6e+02 Score=28.42 Aligned_cols=12 Identities=17% Similarity=0.063 Sum_probs=6.0
Q ss_pred ccCCCcc---CCCCC
Q 007310 67 FAKTQLN---DDYCD 78 (608)
Q Consensus 67 Ip~s~vc---Dg~cD 78 (608)
||-.|.| ||+.|
T Consensus 157 ip~kwf~lkedg~~d 171 (445)
T KOG2891|consen 157 IPCKWFALKEDGSED 171 (445)
T ss_pred Ccceeeeeccccccc
Confidence 4555555 44444
No 85
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.44 E-value=53 Score=29.59 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhcc
Q 007310 9 RFTYAIVLSLLWVSSSV 25 (608)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (608)
+|..|++++|||+++.+
T Consensus 7 llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34444444445555544
No 86
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=29.70 E-value=5.6e+02 Score=25.28 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 143 VARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 143 ~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
-.+..+.+|...+...+..=.+.-.++..++.+++..|.+.+.+-.
T Consensus 55 PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~ 100 (181)
T PRK13454 55 RIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQ 100 (181)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777776666666666677777777776666665543
No 87
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=29.65 E-value=29 Score=31.62 Aligned_cols=11 Identities=18% Similarity=0.232 Sum_probs=5.0
Q ss_pred CCChhHHHHHH
Q 007310 471 SPSWLEKIQQT 481 (608)
Q Consensus 471 ~p~yde~~q~~ 481 (608)
.|+|-+.++-+
T Consensus 43 ~p~fgea~~~~ 53 (101)
T PF09026_consen 43 VPEFGEAMAYF 53 (101)
T ss_dssp ---HHHHHHHH
T ss_pred chhHHHHHhhc
Confidence 37787775543
No 88
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=29.24 E-value=5.6e+02 Score=25.20 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007310 147 KLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKIL 190 (608)
Q Consensus 147 ~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~l 190 (608)
.+..|...+..++..-.+.-+++..++++.+.+|.+.+.+...+
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555544433
No 89
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=28.03 E-value=9.2e+02 Score=27.28 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007310 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKN 185 (608)
Q Consensus 148 ~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~ 185 (608)
+.+|.+.+...+.-=.+...++...++++++.+.+.+.
T Consensus 30 l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ 67 (445)
T PRK13428 30 MAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKA 67 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333344444444444444443
No 90
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.01 E-value=6.5e+02 Score=26.58 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007310 170 KQNLVKDEAELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 170 k~~r~e~~~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
+.+..+.+++..+|..+..+|+..+++++..
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~er 171 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQER 171 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443
No 91
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=27.90 E-value=3.1e+02 Score=25.12 Aligned_cols=30 Identities=37% Similarity=0.334 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007310 161 LRKKEIEQAKQNLVKDEAELSNLKNEEKIL 190 (608)
Q Consensus 161 ~R~elie~gk~~r~e~~~~l~~Lk~e~~~l 190 (608)
.|+.-.++-++++.++..++...+++++.+
T Consensus 66 ~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~l 95 (100)
T PF04568_consen 66 FRKKEKEQLKKLKEKLKEEIEHHRKEIDEL 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344434444444444444333344433333
No 92
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.78 E-value=5.1e+02 Score=28.80 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 007310 183 LKNEEKILKGLVQQLK 198 (608)
Q Consensus 183 Lk~e~~~le~~ve~le 198 (608)
|+..+++|+..++.|+
T Consensus 244 L~~G~~kL~~~~etLE 259 (365)
T KOG2391|consen 244 LNIGKQKLVAMKETLE 259 (365)
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3333333333333333
No 93
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=27.52 E-value=1.9e+02 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 499 SDAARVRKEYDESSDKLSKIQSRISSLT 526 (608)
Q Consensus 499 ~~a~~aR~~~~eae~~l~~le~~I~~le 526 (608)
.+....+.-+..++.+|..|+.+|..|+
T Consensus 50 EEFd~q~~~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 50 EEFDAQKAVLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444445555555555555555554
No 94
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=26.29 E-value=2.9e+02 Score=23.25 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 007310 178 AELSNLKNEEKILKGLVQQLKERKEQ 203 (608)
Q Consensus 178 ~~l~~Lk~e~~~le~~ve~le~~k~~ 203 (608)
.++..++.++..++.+-.+|+.+...
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544333
No 95
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=25.97 E-value=5.3e+02 Score=23.79 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
...+.+|...+..++..=.+...++..++.+.+.++...+.+..
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~ 74 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQ 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466666777777777667777777777777777666666554
No 96
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=25.91 E-value=45 Score=44.79 Aligned_cols=39 Identities=33% Similarity=0.738 Sum_probs=25.8
Q ss_pred eCCCCccccCCCccCCCCCCCCCCCC-----CCCCCCCCCceeccCCC
Q 007310 60 CKDGSKKFAKTQLNDDYCDCPDGTDE-----PGTSACPNGKFYCQNAG 102 (608)
Q Consensus 60 C~dgs~~Ip~s~vcDg~cDC~DGSDE-----~gt~aC~~~~F~C~n~g 102 (608)
|++|..|||+ -|+-.|.|+.|--- .|++-|. +=-|.++|
T Consensus 3911 C~~GgtCip~--~n~f~CnC~~gyTG~~Ce~~Gi~eCs--~n~C~~gg 3954 (4289)
T KOG1219|consen 3911 CLTGGTCIPF--YNGFLCNCPNGYTGKRCEARGISECS--KNVCGTGG 3954 (4289)
T ss_pred CCCCCEEEec--CCCeeEeCCCCccCceeecccccccc--cccccCCc
Confidence 8888789999 45555999986543 2445565 12677766
No 97
>COG4499 Predicted membrane protein [Function unknown]
Probab=25.89 E-value=1.4e+02 Score=33.59 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=8.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 007310 177 EAELSNLKNEEKILKGLVQQL 197 (608)
Q Consensus 177 ~~~l~~Lk~e~~~le~~ve~l 197 (608)
+.++.++..+++.+...+.++
T Consensus 368 ~e~lk~~n~~lqd~~k~~~e~ 388 (434)
T COG4499 368 QELLKEYNKKLQDYTKKLGEV 388 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444433333
No 98
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=25.87 E-value=5.9e+02 Score=24.33 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEE 187 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~ 187 (608)
...+.+|...+..++..=.+.-+++..++.+.+..+...+.+.
T Consensus 34 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea 76 (164)
T PRK14471 34 LGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAER 76 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666655566666666666666666555544
No 99
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.82 E-value=4e+02 Score=26.62 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007310 166 IEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 166 ie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
+.-+++..+..+.++..|+.++.+++..+..+.+.
T Consensus 14 ~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~Ae 48 (178)
T PRK14161 14 NDIAEEIVETANPEITALKAEIEELKDKLIRTTAE 48 (178)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555556666665555554444443
No 100
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.49 E-value=2.7e+02 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=10.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 007310 175 KDEAELSNLKNEEKILKGLVQQLKE 199 (608)
Q Consensus 175 e~~~~l~~Lk~e~~~le~~ve~le~ 199 (608)
+++.++..++.+...++...+.|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 101
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.39 E-value=7.2e+02 Score=25.17 Aligned_cols=45 Identities=9% Similarity=0.108 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 144 ARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 144 ~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
....+.+|...+..++..=..+..++..++.+.+.+|.+.+.+-.
T Consensus 78 I~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~ 122 (204)
T PRK09174 78 IGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAH 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666666666666666666666666666666655555443
No 102
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.28 E-value=5.7e+02 Score=23.97 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
...+..|...+..++..=.+..+++...+.+.+.++.+.+.+..
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~ 73 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAA 73 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666677777777666666666554
No 103
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.91 E-value=5e+02 Score=25.96 Aligned_cols=10 Identities=40% Similarity=0.674 Sum_probs=4.9
Q ss_pred CccccCCCCC
Q 007310 111 SKVNDGICDC 120 (608)
Q Consensus 111 s~VcDGicDC 120 (608)
+.|+||.-+|
T Consensus 38 ~LvDDglV~~ 47 (188)
T PF03962_consen 38 SLVDDGLVHV 47 (188)
T ss_pred HHhccccchh
Confidence 3455555543
No 104
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.81 E-value=1.4e+03 Score=29.44 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007310 499 SDAARVRKEYDESSDKLSKIQSR 521 (608)
Q Consensus 499 ~~a~~aR~~~~eae~~l~~le~~ 521 (608)
+..+++|.++.++.++++.-.++
T Consensus 577 ~~~~~~rqrveE~ks~~~~~~s~ 599 (1293)
T KOG0996|consen 577 SQLNKLRQRVEEAKSSLSSSRSR 599 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 34455555555555555444444
No 105
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=24.72 E-value=3.2e+02 Score=29.42 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=4.8
Q ss_pred Hhhcccccc
Q 007310 21 VSSSVIGRS 29 (608)
Q Consensus 21 ~~~~~~~~~ 29 (608)
++...|||+
T Consensus 18 ~~~y~~G~~ 26 (321)
T PF07946_consen 18 VVNYFIGKS 26 (321)
T ss_pred HHHHHHHHH
Confidence 344556665
No 106
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=24.37 E-value=6.6e+02 Score=24.36 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 145 r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
...+.+|...+...+..=.+...++...+.+.+.++...+.+..
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 85 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEAN 85 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666665544
No 107
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=24.20 E-value=50 Score=35.25 Aligned_cols=69 Identities=20% Similarity=0.387 Sum_probs=37.0
Q ss_pred hhhccccceeeec----CceeEe--eccC-Cc------ccccC--CCCcccccccccc---c-CcceeeeecCCCcCCCC
Q 007310 539 FYSFYGHCFESKQ----NKYVYK--VCPY-KK------ATQEE--GHSTTRLGSWDKF---E-DSYHIMLFSNGDKCWNG 599 (608)
Q Consensus 539 f~~L~~qCfe~~~----~eY~Y~--lCpF-~~------~tQk~--gg~~t~LG~w~~w---~-~~ys~m~Y~~G~~CWNG 599 (608)
+.+|.++=|+.+. ++|+|. ||-= ++ +.|.+ .+-.|+||+...= . .+.-...|.+|+.+=+-
T Consensus 53 l~pl~~~~f~~~~~~g~d~ytY~f~vC~~v~~~ss~~G~vq~d~~t~K~~vIG~~n~T~vf~G~kwvmltY~gGd~yd~~ 132 (278)
T PF02157_consen 53 LEPLFNKSFESTVGQGSDNYTYIFRVCRDVGNNSSGAGLVQIDKKTGKYTVIGRYNSTPVFRGSKWVMLTYKGGDKYDSH 132 (278)
T ss_dssp TGGGTT-EEEEEESSTTSEEEEEEESSS--SSSSSTEEEEEEETTTTEEEEEEEEEEEEEEEESSEEEEEEEEEEB-SSS
T ss_pred cccccCCceEeeecccCcceEEEEEEeccCCCCCCcceEEEecCCCCceEEEEeeeeeEEecCceEEEEEcCCCCccCCc
Confidence 4556666666444 345554 6751 22 23443 2457889988763 1 24444568888765443
Q ss_pred C---CcceEEE
Q 007310 600 P---DRSMKVT 607 (608)
Q Consensus 600 P---~RS~~V~ 607 (608)
. .|++.|.
T Consensus 133 ~~~~~Rka~i~ 143 (278)
T PF02157_consen 133 CGKERRKAIIM 143 (278)
T ss_dssp GGG-BEEEEEE
T ss_pred cccccceeEEE
Confidence 2 4666664
No 108
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=24.19 E-value=1e+03 Score=29.91 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=4.8
Q ss_pred CceeeCCCC
Q 007310 56 NTIKCKDGS 64 (608)
Q Consensus 56 ~~F~C~dgs 64 (608)
...+|.||.
T Consensus 644 kN~yAANGI 652 (1018)
T KOG2002|consen 644 KNMYAANGI 652 (1018)
T ss_pred chhhhccch
Confidence 344566664
No 109
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.11 E-value=1e+02 Score=37.17 Aligned_cols=59 Identities=25% Similarity=0.530 Sum_probs=30.2
Q ss_pred ccCCCCCCCCCCCCCCC--------CCCCCCceeccCCCCCCcccccCccccCCCCCCC----CCCCCCCCCCCchhhH
Q 007310 72 LNDDYCDCPDGTDEPGT--------SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCD----GSDEYDGKVKCPNTCW 138 (608)
Q Consensus 72 vcDg~cDC~DGSDE~gt--------~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcD----GSDE~~~~~~C~n~C~ 138 (608)
-|...|.|..-.=+|.| |+|-. -|.+..- +.....+=-.|-|-. +..... .-+|+++|.
T Consensus 513 ~Cn~~C~C~~~~~~PVCg~~G~tY~SpChA---GC~~~~~----~~~~~~~ytnCsCv~~~~~~~~~a~-~G~C~~~c~ 583 (735)
T KOG3626|consen 513 SCNSDCSCDTSEYEPVCGENGITYFSPCHA---GCTESSG----TSDGNTIYTNCSCVPTNKNGNGSAK-KGYCPNDCC 583 (735)
T ss_pred hhhcCCCCCCcCcCcccCCCCCEEeChhhh---CCccccc----CCCCceeeccccccccccCCCceee-cCCCCCCcc
Confidence 47777777654444443 34543 3554421 112233334577776 333322 238999983
No 110
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.70 E-value=1.1e+03 Score=26.65 Aligned_cols=10 Identities=30% Similarity=1.026 Sum_probs=5.9
Q ss_pred cCCCCCCCCC
Q 007310 115 DGICDCCDGS 124 (608)
Q Consensus 115 DGicDCcDGS 124 (608)
.+.|.+|..+
T Consensus 284 ~~~Cp~C~~~ 293 (562)
T PHA02562 284 GGVCPTCTQQ 293 (562)
T ss_pred CCCCCCCCCc
Confidence 5577666543
No 111
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.53 E-value=7.1e+02 Score=27.74 Aligned_cols=24 Identities=38% Similarity=0.257 Sum_probs=9.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 007310 179 ELSNLKNEEKILKGLVQQLKERKE 202 (608)
Q Consensus 179 ~l~~Lk~e~~~le~~ve~le~~k~ 202 (608)
+++.|+....+|..-.++|+..++
T Consensus 233 eq~slkRt~EeL~~G~~kL~~~~e 256 (365)
T KOG2391|consen 233 EQESLKRTEEELNIGKQKLVAMKE 256 (365)
T ss_pred HHHHHHhhHHHHHhhHHHHHHHHH
Confidence 333333333333333334444333
No 112
>PRK09039 hypothetical protein; Validated
Probab=23.12 E-value=1e+03 Score=26.03 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 173 LVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (608)
Q Consensus 173 r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~ 206 (608)
..+...++..|+.++..|+.++..|+.....+++
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666666666666666666555554
No 113
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=22.83 E-value=1.6e+03 Score=28.80 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCchhhhhcc
Q 007310 512 SDKLSKIQSRISSLTQKLKHEFGPEKEFYSFY 543 (608)
Q Consensus 512 e~~l~~le~~I~~le~~L~~dfG~~~ef~~L~ 543 (608)
-..|.++.++|...-..|+.+++...-|..+.
T Consensus 998 ~~~l~~~~r~I~~~s~~l~~~v~~~~~~~~i~ 1029 (1201)
T PF12128_consen 998 YGVLEDFDRRIKSQSRRLSREVSEDLFFEAIS 1029 (1201)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhccccccc
Confidence 34455566666666666666666655555443
No 114
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=22.74 E-value=1.2e+03 Score=26.98 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 007310 142 KVARDKLKKKIATYQEGVLLRKKEIEQAKQN---LVKDEAELSNLKNEEKILKG----LVQQLKERKEQIEKAEEKERLQ 214 (608)
Q Consensus 142 ~~~r~~~~~~~e~~~~G~~~R~elie~gk~~---r~e~~~~l~~Lk~e~~~le~----~ve~le~~k~~~e~~e~~Ere~ 214 (608)
++.....-...+.|...++.|.+.+.+...+ ..++..++..|+..+.+|+. .++-|+.+|+..+..--.-.+.
T Consensus 421 kK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeE 500 (527)
T PF15066_consen 421 KKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEE 500 (527)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 007310 215 REKEEKERKEAEEN 228 (608)
Q Consensus 215 kek~~k~~~e~~~~ 228 (608)
.+||+++.-+...+
T Consensus 501 fQk~ekenl~ERqk 514 (527)
T PF15066_consen 501 FQKHEKENLEERQK 514 (527)
T ss_pred HHHHHHhhHHHHHH
No 115
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=22.63 E-value=4.3e+02 Score=21.64 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007310 152 IATYQEGVLLRKKEIEQAK 170 (608)
Q Consensus 152 ~e~~~~G~~~R~elie~gk 170 (608)
.......+..|..||++++
T Consensus 26 ~~~~~~n~~~K~~Li~~~~ 44 (77)
T PF03993_consen 26 DAEREENLEKKEALIEEAE 44 (77)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433
No 116
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=22.50 E-value=9.7e+02 Score=25.62 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 138 WEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREK 217 (608)
Q Consensus 138 ~e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~~e~~Ere~kek 217 (608)
...-..++..+.....+++.|+..+.++. .++......+.++..++.++..++..+..++........ ..+.....
T Consensus 171 ~~~l~~~~~~~~~~~~L~~~g~is~~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 246 (423)
T TIGR01843 171 RQQLEVISEELEARRKLKEKGLVSRLELL-ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQ---TFREEVLE 246 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhH
Q 007310 218 EEKERKEAEENERKEKSESGE 238 (608)
Q Consensus 218 ~~k~~~e~~~~~~~~~~~~~~ 238 (608)
...+.................
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 117
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=22.46 E-value=1.3e+03 Score=27.14 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=9.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 007310 178 AELSNLKNEEKILKGLVQQLKERK 201 (608)
Q Consensus 178 ~~l~~Lk~e~~~le~~ve~le~~k 201 (608)
.++.+|-..+..++.++..+.-+|
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ek 256 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEK 256 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444444443333
No 118
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=22.42 E-value=80 Score=37.52 Aligned_cols=78 Identities=26% Similarity=0.618 Sum_probs=46.1
Q ss_pred eCCCCccccCCCccCCCCCCCCCCCC----CCCCCCCCCceeccCCCCCCcccccCcccc-CCCCCCCCCCCCCC-CCCC
Q 007310 60 CKDGSKKFAKTQLNDDYCDCPDGTDE----PGTSACPNGKFYCQNAGHSPLMIFSSKVND-GICDCCDGSDEYDG-KVKC 133 (608)
Q Consensus 60 C~dgs~~Ip~s~vcDg~cDC~DGSDE----~gt~aC~~~~F~C~n~g~~~~~Ip~s~VcD-GicDCcDGSDE~~~-~~~C 133 (608)
|..|-.||.-..-|--+|-|. +|. |||. |+. .|..+. =.|.-..|=|| .+|-||-..|-+.+ .+.|
T Consensus 512 c~~~C~C~~n~~~CEk~C~C~--~dC~nrF~GC~-Ck~---QC~tkq--CpC~~A~rECdPd~Cl~cg~~~~~d~~~~~C 583 (739)
T KOG1079|consen 512 CGVGCPCIDNETFCEKFCYCS--PDCRNRFPGCR-CKA---QCNTKQ--CPCYLAVRECDPDVCLMCGNVDHFDSSKISC 583 (739)
T ss_pred CCCCCcccccCcchhhcccCC--HHHHhcCCCCC-ccc---ccccCc--CchhhhccccCchHHhccCcccccccCcccc
Confidence 333333454444455555552 222 3331 332 555542 24777889999 99999888777665 4589
Q ss_pred chhhHHHHHHHH
Q 007310 134 PNTCWEAGKVAR 145 (608)
Q Consensus 134 ~n~C~e~g~~~r 145 (608)
.|++..+|...|
T Consensus 584 ~N~~l~~~~qkr 595 (739)
T KOG1079|consen 584 KNTNLQRGEQKR 595 (739)
T ss_pred ccchhhhhhhcc
Confidence 998777655444
No 119
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.97 E-value=1.4e+03 Score=27.70 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 136 TCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAEL 180 (608)
Q Consensus 136 ~C~e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l 180 (608)
-|.+.-..+.+.+++ +.+...-+.|.++..++..++.+++.++
T Consensus 536 E~l~lL~~a~~vlre--eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql 578 (717)
T PF10168_consen 536 ECLELLSQATKVLRE--EYIEKQDLAREEIQRRVKLLKQQKEQQL 578 (717)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555444433332 2223344556666666666655555433
No 120
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.95 E-value=1.7e+03 Score=28.38 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=6.2
Q ss_pred Hhhhhhhhcccc
Q 007310 367 ELGRLVASRWTG 378 (608)
Q Consensus 367 dl~~f~~~~w~~ 378 (608)
++.+|+...|..
T Consensus 799 eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 799 EYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHh
Confidence 445555555544
No 121
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=21.69 E-value=2.1e+02 Score=22.79 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhh
Q 007310 9 RFTYAIVLSLLWVSS 23 (608)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (608)
.|+|+++++|.|...
T Consensus 6 KFvY~mIiflslflv 20 (54)
T PF07127_consen 6 KFVYAMIIFLSLFLV 20 (54)
T ss_pred hhHHHHHHHHHHHHh
Confidence 466666665555444
No 122
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.43 E-value=7.5e+02 Score=26.48 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=5.8
Q ss_pred cChHHHHHHHHHH
Q 007310 496 VDKSDAARVRKEY 508 (608)
Q Consensus 496 ~d~~~a~~aR~~~ 508 (608)
++|.++.+..++|
T Consensus 275 VSIaelAe~SN~l 287 (299)
T KOG3054|consen 275 VSIAELAEKSNQL 287 (299)
T ss_pred eeHHHHHHhhcch
Confidence 4455544444433
No 123
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=21.31 E-value=79 Score=22.01 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhh
Q 007310 9 RFTYAIVLSLLWVSS 23 (608)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (608)
.++..++++|.++++
T Consensus 7 alivVLFILLiIvG~ 21 (24)
T PF09680_consen 7 ALIVVLFILLIIVGA 21 (24)
T ss_pred hhHHHHHHHHHHhcc
Confidence 344444444444444
No 124
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.13 E-value=4.5e+02 Score=21.29 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=6.7
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 007310 180 LSNLKNEEKILKGLVQQL 197 (608)
Q Consensus 180 l~~Lk~e~~~le~~ve~l 197 (608)
+..|+..+..|+.....|
T Consensus 28 ~~~Le~~~~~L~~en~~L 45 (64)
T PF00170_consen 28 IEELEEKVEELESENEEL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 125
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=20.99 E-value=7.7e+02 Score=23.88 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007310 146 DKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (608)
Q Consensus 146 ~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~ 188 (608)
..+..|...+...+..=.+...++...+.+.+.+|...+.+..
T Consensus 46 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~ 88 (174)
T PRK07352 46 KILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAE 88 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555555555555555555566666666666555555443
No 126
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.94 E-value=6e+02 Score=30.00 Aligned_cols=7 Identities=43% Similarity=0.397 Sum_probs=2.8
Q ss_pred CCCCCcc
Q 007310 597 WNGPDRS 603 (608)
Q Consensus 597 WNGP~RS 603 (608)
|.||.|.
T Consensus 415 ~~i~l~~ 421 (567)
T PLN03086 415 HYIPSRS 421 (567)
T ss_pred CccchhH
Confidence 4444443
No 127
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.81 E-value=1.5e+03 Score=28.99 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 139 EAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKE 218 (608)
Q Consensus 139 e~g~~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~~e~~Ere~kek~ 218 (608)
++-.+++..++...+.-+.=-.+++++...-+..-.....++.+.+.+++.|+.+++.++.....+.. +...-+++.
T Consensus 355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~---e~~~~~~~~ 431 (1074)
T KOG0250|consen 355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE---ELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_pred HHHHHHHHH
Q 007310 219 EKERKEAEE 227 (608)
Q Consensus 219 ~k~~~e~~~ 227 (608)
....++...
T Consensus 432 ~~~~ee~~~ 440 (1074)
T KOG0250|consen 432 KEEEEEKEH 440 (1074)
T ss_pred HHhHHHHHH
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=20.76 E-value=9.1e+02 Score=28.82 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=10.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 007310 180 LSNLKNEEKILKGLVQQLKERKEQI 204 (608)
Q Consensus 180 l~~Lk~e~~~le~~ve~le~~k~~~ 204 (608)
++.|+.++-.|+-+.+.|+.++.+.
T Consensus 648 ~eRl~~erlrle~qRQrLERErmEr 672 (940)
T KOG4661|consen 648 LERLKAERLRLERQRQRLERERMER 672 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 129
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=20.73 E-value=2.7e+02 Score=24.63 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 007310 182 NLKNEEKILKGLVQQLK 198 (608)
Q Consensus 182 ~Lk~e~~~le~~ve~le 198 (608)
++..++...+..+.+++
T Consensus 5 Ki~~eieK~k~Kiae~Q 21 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQ 21 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 130
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.60 E-value=1.2e+02 Score=36.60 Aligned_cols=10 Identities=0% Similarity=0.062 Sum_probs=5.0
Q ss_pred hhhhhccccC
Q 007310 370 RLVASRWTGE 379 (608)
Q Consensus 370 ~f~~~~w~~~ 379 (608)
.++..+|..+
T Consensus 607 ~~~~~vf~~~ 616 (784)
T PF04931_consen 607 KVSEQVFEAF 616 (784)
T ss_pred HHHHHHHHHH
Confidence 4444555544
No 131
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.39 E-value=1e+03 Score=25.12 Aligned_cols=11 Identities=9% Similarity=0.160 Sum_probs=6.2
Q ss_pred HHHHHHHHHHH
Q 007310 501 AARVRKEYDES 511 (608)
Q Consensus 501 a~~aR~~~~ea 511 (608)
+...|+.|...
T Consensus 227 L~n~RsgFr~~ 237 (246)
T KOG4657|consen 227 LENKRSGFRVN 237 (246)
T ss_pred HHHHHHHHHHH
Confidence 45666666543
No 132
>PRK10698 phage shock protein PspA; Provisional
Probab=20.19 E-value=9.4e+02 Score=24.61 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 153 ATYQEGVLLRKKEIEQAKQNLVKDEA---ELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQRE 216 (608)
Q Consensus 153 e~~~~G~~~R~elie~gk~~r~e~~~---~l~~Lk~e~~~le~~ve~le~~k~~~e~~e~~Ere~ke 216 (608)
.+++..+..|..+.+.+..+..++.. .+..|+..+..|+..+.+++..+..+.......+.++.
T Consensus 85 dLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 85 DLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!