Query 007310
Match_columns 608
No_of_seqs 291 out of 807
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fcw_B LDL receptor, low-densi 99.7 8.6E-18 2.9E-22 142.6 3.7 70 54-128 4-75 (80)
2 2fyj_A Low-density lipoprotein 99.7 2.9E-17 9.8E-22 139.8 6.7 70 54-128 6-79 (82)
3 3aih_A Protein OS-9; beta barr 99.4 4.5E-14 1.5E-18 128.3 4.6 66 543-608 2-89 (124)
4 1n7d_A LDL receptor, low-densi 99.3 1.9E-12 6.6E-17 146.1 7.3 70 55-128 49-121 (699)
5 3m0c_C LDL receptor, low-densi 99.3 4.3E-13 1.5E-17 154.1 0.0 72 54-128 25-100 (791)
6 1n7d_A LDL receptor, low-densi 99.2 8.2E-12 2.8E-16 140.9 7.2 68 54-126 89-158 (699)
7 2xrc_A Human complement factor 99.1 2.7E-11 9.4E-16 134.1 5.9 67 57-128 208-274 (565)
8 3m0c_C LDL receptor, low-densi 99.1 7.2E-12 2.4E-16 144.0 0.0 71 54-128 66-139 (791)
9 2kny_A LRP-1, linker, APO-E; l 98.9 3.4E-11 1.2E-15 102.2 -2.9 70 89-162 7-78 (80)
10 1jrf_A TVA LDL-A module, subgr 98.9 7.5E-10 2.6E-14 84.7 3.8 41 87-127 1-42 (47)
11 1cr8_A Protein (LOW density li 98.7 8.6E-09 3E-13 77.2 3.7 36 90-128 3-38 (42)
12 1j8e_A Low-density lipoprotein 98.6 1.1E-08 3.6E-13 77.4 2.8 38 87-128 1-38 (44)
13 2jm4_A Relaxin receptor 1; LDL 98.6 1.8E-08 6.3E-13 75.7 3.5 37 89-128 5-41 (43)
14 3dpr_E LDL-receptor class A 3; 98.6 2.4E-08 8.3E-13 73.6 3.5 36 91-128 1-36 (39)
15 2rl8_A Cation-dependent mannos 98.6 2.5E-08 8.6E-13 94.2 3.6 72 537-608 24-117 (154)
16 2kny_A LRP-1, linker, APO-E; l 98.5 1.5E-08 5.3E-13 85.9 1.3 58 54-113 10-73 (80)
17 2knx_A Prolow-density lipoprot 98.5 3.5E-08 1.2E-12 76.7 3.2 38 88-128 4-41 (50)
18 1ajj_A LR5, low-density lipopr 98.5 4.1E-08 1.4E-12 71.5 3.1 34 91-128 2-35 (37)
19 2gtl_O Extracellular hemoglobi 98.5 3.2E-09 1.1E-13 105.2 -4.3 50 75-128 39-90 (215)
20 2m0p_A Low-density lipoprotein 98.5 3.1E-08 1.1E-12 77.8 1.7 38 89-130 5-42 (52)
21 1d2l_A Lipoprotein receptor re 98.5 6.7E-08 2.3E-12 73.6 3.4 40 90-135 5-44 (45)
22 3a7q_B Low-density lipoprotein 98.5 6.7E-08 2.3E-12 73.0 3.1 35 90-128 7-41 (44)
23 2i1p_A Low-density lipoprotein 98.5 3.6E-08 1.2E-12 75.8 1.3 37 89-128 5-41 (48)
24 3dpr_E LDL-receptor class A 3; 98.4 1.2E-07 4E-12 69.9 3.8 33 55-87 3-36 (39)
25 1ajj_A LR5, low-density lipopr 98.4 8.1E-08 2.8E-12 69.9 2.8 33 54-87 3-35 (37)
26 1cr8_A Protein (LOW density li 98.4 1.5E-07 5.1E-12 70.4 4.2 34 54-87 5-38 (42)
27 2i1p_A Low-density lipoprotein 98.4 6.6E-08 2.2E-12 74.3 1.4 35 54-88 8-42 (48)
28 1k7b_A Subgroup A ROUS sarcoma 98.4 1.1E-07 3.8E-12 72.6 2.5 39 90-128 6-45 (47)
29 2jm4_A Relaxin receptor 1; LDL 98.4 1.7E-07 6E-12 70.4 3.5 34 54-87 8-41 (43)
30 1d2l_A Lipoprotein receptor re 98.4 2E-07 7E-12 70.9 3.9 33 55-88 8-40 (45)
31 2knx_A Prolow-density lipoprot 98.4 1.4E-07 4.7E-12 73.3 3.0 38 54-92 8-46 (50)
32 3a7q_B Low-density lipoprotein 98.4 2E-07 6.8E-12 70.4 3.2 33 54-87 9-41 (44)
33 2m0p_A Low-density lipoprotein 98.3 1.3E-07 4.3E-12 74.3 0.8 33 54-87 8-40 (52)
34 1k7b_A Subgroup A ROUS sarcoma 98.3 2.5E-07 8.5E-12 70.7 2.2 33 54-87 8-45 (47)
35 1jrf_A TVA LDL-A module, subgr 98.3 3.4E-07 1.2E-11 69.9 2.7 34 54-87 6-43 (47)
36 2fyj_A Low-density lipoprotein 98.3 3.9E-07 1.3E-11 77.3 3.3 35 89-127 3-37 (82)
37 1j8e_A Low-density lipoprotein 98.2 4.8E-07 1.6E-11 68.3 1.9 33 54-87 6-38 (44)
38 2fcw_B LDL receptor, low-densi 98.1 1.4E-06 4.8E-11 73.7 3.4 35 90-128 2-36 (80)
39 2kva_A Cation-independent mann 98.1 3.8E-06 1.3E-10 77.2 5.9 75 534-608 23-116 (148)
40 2gtl_M Hemoglobin linker chain 97.9 3.1E-06 1E-10 84.0 2.6 38 87-127 50-88 (217)
41 2gtl_O Extracellular hemoglobi 97.9 2.4E-06 8.2E-11 84.7 1.7 44 54-98 56-103 (215)
42 2gtl_M Hemoglobin linker chain 97.9 3.6E-06 1.2E-10 83.5 1.8 33 54-86 55-88 (217)
43 2gtl_N Extracellular hemoglobi 97.7 1.8E-05 6.3E-10 78.3 4.2 48 54-101 54-109 (220)
44 2xrc_A Human complement factor 97.6 2.1E-05 7.3E-10 87.1 2.5 65 55-128 173-237 (565)
45 2gtl_N Extracellular hemoglobi 97.6 3.2E-05 1.1E-09 76.6 3.4 35 90-127 52-87 (220)
46 1gp0_A Cation-independent mann 97.5 4.6E-05 1.6E-09 70.1 3.8 40 569-608 61-105 (143)
47 3ojy_B Complement component C8 97.2 0.00013 4.5E-09 80.7 3.6 42 56-101 69-111 (537)
48 3ojy_A Complement component C8 97.2 0.00021 7.2E-09 79.5 4.2 45 56-101 68-113 (554)
49 3ojy_B Complement component C8 96.9 0.00072 2.5E-08 74.9 5.3 31 94-128 69-100 (537)
50 3ojy_A Complement component C8 96.7 0.001 3.5E-08 74.0 4.8 33 91-128 66-99 (554)
51 3t5o_A Complement component C6 93.9 0.021 7.3E-07 66.8 2.7 41 56-100 121-161 (913)
52 3t5o_A Complement component C6 93.9 0.032 1.1E-06 65.3 4.0 33 91-128 119-151 (913)
53 2lla_A Mannose-6-phosphate/ins 84.7 0.9 3.1E-05 40.8 4.6 38 571-608 60-102 (140)
54 2l21_A Cation-independent mann 64.4 3 0.0001 38.6 2.3 44 565-608 60-108 (154)
55 3vkg_A Dynein heavy chain, cyt 63.5 1E+02 0.0034 41.4 16.5 36 143-178 1910-1945(3245)
56 3ghg_A Fibrinogen alpha chain; 62.1 95 0.0032 34.5 13.6 14 131-144 43-56 (562)
57 1q25_A CI, cation-independent 61.7 8.9 0.0003 40.9 5.6 37 572-608 357-397 (432)
58 1gmj_A ATPase inhibitor; coile 57.5 78 0.0027 27.0 9.5 37 162-198 35-71 (84)
59 3iv1_A Tumor susceptibility ge 53.6 1E+02 0.0034 26.0 11.2 33 174-206 28-60 (78)
60 1m1j_A Fibrinogen alpha subuni 52.3 1.6E+02 0.0056 32.2 13.2 19 124-143 38-56 (491)
61 1m1j_B Fibrinogen beta chain; 50.8 80 0.0027 34.5 10.8 12 131-142 79-90 (464)
62 2l2g_A IGF2R domain 11; insuli 49.6 11 0.00037 34.8 3.3 39 570-608 62-105 (151)
63 1m1j_C Fibrinogen gamma chain; 48.6 2.8E+02 0.0096 29.7 14.9 21 119-141 7-27 (409)
64 3ghg_C Fibrinogen gamma chain; 46.3 1.3E+02 0.0043 32.5 11.3 22 119-142 7-28 (411)
65 3mq7_A Bone marrow stromal ant 44.6 1.8E+02 0.0061 26.3 14.4 18 185-202 71-88 (121)
66 3mq7_A Bone marrow stromal ant 42.2 1.4E+02 0.0048 26.9 9.1 21 179-199 72-92 (121)
67 1deq_A Fibrinogen (alpha chain 41.7 2.8E+02 0.0095 29.6 12.8 12 131-142 46-57 (390)
68 2yy0_A C-MYC-binding protein; 36.2 64 0.0022 25.0 5.3 34 498-531 18-51 (53)
69 3nmd_A CGMP dependent protein 36.1 1.1E+02 0.0037 25.4 6.9 18 177-194 46-63 (72)
70 3mq9_A Bone marrow stromal ant 35.3 1.7E+02 0.0058 30.7 10.3 22 170-191 396-417 (471)
71 2i1j_A Moesin; FERM, coiled-co 35.0 39 0.0013 37.6 5.5 23 169-191 333-355 (575)
72 3hnw_A Uncharacterized protein 34.7 2.7E+02 0.0091 25.4 10.8 21 178-198 82-102 (138)
73 1uii_A Geminin; human, DNA rep 34.0 2.2E+02 0.0075 24.2 9.0 37 166-202 41-77 (83)
74 3ni0_A Bone marrow stromal ant 33.8 2.4E+02 0.0082 24.6 11.2 6 137-142 16-21 (99)
75 3vkg_A Dynein heavy chain, cyt 33.5 5.1E+02 0.017 35.0 15.9 39 159-197 1915-1953(3245)
76 2jee_A YIIU; FTSZ, septum, coi 32.9 2.2E+02 0.0076 24.0 10.0 24 176-199 25-48 (81)
77 3mq9_A Bone marrow stromal ant 31.8 4.4E+02 0.015 27.5 12.8 15 173-187 406-420 (471)
78 3nmd_A CGMP dependent protein 30.2 92 0.0031 25.8 5.5 31 159-189 35-65 (72)
79 1hjb_A Ccaat/enhancer binding 29.8 2.6E+02 0.0088 23.8 10.0 16 182-197 47-62 (87)
80 1rtm_1 Mannose-binding protein 27.7 63 0.0022 28.3 4.6 47 505-556 3-49 (149)
81 2v5o_A Cation-independent mann 27.7 32 0.0011 38.7 3.2 40 569-608 61-105 (627)
82 1a92_A Delta antigen; leucine 27.3 81 0.0028 24.3 4.3 30 499-528 7-36 (50)
83 2v4h_A NF-kappa-B essential mo 27.0 3.4E+02 0.012 24.2 11.9 23 148-170 29-51 (110)
84 1t3j_A Mitofusin 1; coiled coi 26.5 2E+02 0.0067 25.1 7.3 35 167-201 43-77 (96)
85 3twe_A Alpha4H; unknown functi 25.1 75 0.0026 21.2 3.3 21 510-530 5-25 (27)
86 3ghg_B Fibrinogen beta chain; 24.5 2.3E+02 0.0079 30.9 9.0 19 120-140 65-83 (461)
87 1gu4_A CAAT/enhancer binding p 23.6 3.2E+02 0.011 22.7 9.7 16 182-197 47-62 (78)
88 1hvw_A Omega-ACTX-HV1A, omega- 23.2 39 0.0013 22.8 1.7 18 107-124 1-18 (26)
89 2zxx_A Geminin; coiled-coil, c 23.2 3.3E+02 0.011 22.8 9.0 25 176-200 46-70 (79)
90 4dzn_A Coiled-coil peptide CC- 22.4 1.5E+02 0.0052 20.5 4.5 14 181-194 12-25 (33)
91 2v66_B Nuclear distribution pr 22.0 4.2E+02 0.014 23.5 12.1 39 169-207 33-71 (111)
92 1dl0_A J-atracotoxin-HV1C; neu 20.2 32 0.0011 24.6 0.9 24 112-135 8-34 (37)
93 2wvr_A Geminin; DNA replicatio 20.1 6.1E+02 0.021 24.8 10.0 59 144-206 99-157 (209)
No 1
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.68 E-value=8.6e-18 Score=142.56 Aligned_cols=70 Identities=34% Similarity=0.594 Sum_probs=63.8
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCCCC--CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTS--ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt~--aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
..+.|+|.+| .|||.++||||+.||+|||||.++. .|+.+.|+|.|+ .|||.+|||||+.||.|||||..
T Consensus 4 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~~ 75 (80)
T 2fcw_B 4 SQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEWP 75 (80)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS----CEEEGGGTTSSSCCSTTCGGGCG
T ss_pred CCCccCCCCC-CEEeeecccCCcccCCCcccccccccccCCceeeECCCC----CEEecccccCCCcCCCCCCCcCc
Confidence 3578999998 6999999999999999999999854 588899999985 69999999999999999999954
No 2
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.68 E-value=2.9e-17 Score=139.75 Aligned_cols=70 Identities=30% Similarity=0.412 Sum_probs=62.2
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCC-CCC--CCCC-CCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDE-PGT--SACP-NGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE-~gt--~aC~-~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
..+.|+|.+| .|||.+|||||+.||.||||| .++ ..|. .+.|+|.|+ .|||.++||||+.||.|||||.+
T Consensus 6 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g----~CI~~~~~CDG~~DC~DgSDE~~ 79 (82)
T 2fyj_A 6 PPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDNDCGDNSDEAG 79 (82)
T ss_dssp CTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTS----CEEETTCBSSSSBCCSSSSSCSC
T ss_pred CCCceEeCCC-CEEeccccCCCcccCCCccccccccccccCCCCCceECCCC----CeEcHHHccCCCCcCCCCccccC
Confidence 4678999998 699999999999999999999 554 3684 589999986 69999999999999999999964
No 3
>3aih_A Protein OS-9; beta barrel, lectin, sugar binding protein; HET: BMA MAN; 2.10A {Homo sapiens}
Probab=99.44 E-value=4.5e-14 Score=128.31 Aligned_cols=66 Identities=24% Similarity=0.524 Sum_probs=57.8
Q ss_pred cccceeeecCceeEeeccCCcccccC------CCCccccccccc---cc------------CcceeeeecCCCcC-CCCC
Q 007310 543 YGHCFESKQNKYVYKVCPYKKATQEE------GHSTTRLGSWDK---FE------------DSYHIMLFSNGDKC-WNGP 600 (608)
Q Consensus 543 ~~qCfe~~~~eY~Y~lCpF~~~tQk~------gg~~t~LG~w~~---w~------------~~ys~m~Y~~G~~C-WNGP 600 (608)
.++||....+.|+|++|+++.|.|.. ++..++||+|.+ |+ .+|.+|.|+||+.| ||||
T Consensus 2 ~~~C~~~~~g~wtYe~C~~k~v~Q~h~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~G~~Cd~~g~ 81 (124)
T 3aih_A 2 SAPCLLKTKDWWTYEFCYGRHIQQYHMEDSEIKGEVLYLGYYQSAFDWDDETAKASKQHRLKRYHSQTYGNGSKCDLNGR 81 (124)
T ss_dssp --CCEEEEETTEEEEEETTTEEEEECEETTEECSCCEEEEEEEEEEEEEC-----------CEEEEEEEECCSBCTTTSC
T ss_pred CCcceEcCCCEEEEEECCCCeEEEecccCCCCCCCEEECccccccccccccccccccccccceeEEEEcCCCCccCCCCC
Confidence 36899999999999999999999962 456788999999 84 36899999999999 9999
Q ss_pred CcceEEEC
Q 007310 601 DRSMKVTL 608 (608)
Q Consensus 601 ~RS~~V~L 608 (608)
+|||+|.|
T Consensus 82 ~Rst~V~~ 89 (124)
T 3aih_A 82 PREAEVRF 89 (124)
T ss_dssp BCEEEEEE
T ss_pred CcEEEEEE
Confidence 99999975
No 4
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.29 E-value=1.9e-12 Score=146.08 Aligned_cols=70 Identities=31% Similarity=0.548 Sum_probs=43.9
Q ss_pred CCceeeCCCC-ccccCCCccCCCCCCCCCCCCCCCC--CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 55 SNTIKCKDGS-KKFAKTQLNDDYCDCPDGTDEPGTS--ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 55 ~~~F~C~dgs-~~Ip~s~vcDg~cDC~DGSDE~gt~--aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
.+.|+|.+|+ .|||.+|+|||+.||.|||||.++. .|+.+.|+|.|+ .|||.++||||+.||.|||||.+
T Consensus 49 ~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~dC~dgsDE~~ 121 (699)
T 1n7d_A 49 SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS 121 (699)
T ss_dssp SSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSCC--------CCCTTCSSCCSSSSCSSSS
T ss_pred CCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCCC----CEecHHHcCCCcCcCCCCCccCC
Confidence 4567776642 5777777777777777777776653 466677777664 47777777777777777777743
No 5
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.27 E-value=4.3e-13 Score=154.06 Aligned_cols=72 Identities=33% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC--C--CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG--T--SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g--t--~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
..+.|+|.|| .|||.+|+|||..||.|||||.. + ..|+.+.|.|.|.. ..|||.+|+|||+.||.|||||.+
T Consensus 25 ~~~~f~C~~g-~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~--~~Ci~~~~~CDg~~dC~dgsDE~~ 100 (791)
T 3m0c_C 25 ERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV--NRCIPQFWRCDGQVDCDNGSDEQG 100 (791)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcCccCCCCC-CEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCC--CCEeeccccCCCCcCcCCCcccCC
Confidence 4678999999 69999999999999999999976 3 35888999999831 269999999999999999999964
No 6
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=99.22 E-value=8.2e-12 Score=140.94 Aligned_cols=68 Identities=35% Similarity=0.607 Sum_probs=58.8
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCCCC--CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTS--ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDE 126 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt~--aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE 126 (608)
....|+|.+| .|||.+++|||..||+|||||.++. .|+.+.|+|.|+ .|||.+|+|||+.||.|||||
T Consensus 89 ~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE 158 (699)
T 1n7d_A 89 SQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDE 158 (699)
T ss_dssp CSSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSS----CCCCTTSTTCSSCCSSSSSSS
T ss_pred ccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCC----cccchhcccCCCCcCCCCccc
Confidence 3578999988 6999999999999999999998864 598899999875 699999999999999999999
No 7
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=134.05 Aligned_cols=67 Identities=31% Similarity=0.556 Sum_probs=62.5
Q ss_pred ceeeCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 57 TIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 57 ~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
.|.|.+| .|||..++|||..||+|||||.+|..|+.+.|+|.++ .|||..++|||+-||.|||||++
T Consensus 208 ~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~~C~~c~~~~~~C~~~----~C~~~~~~cdG~~dC~~gsDE~~ 274 (565)
T 2xrc_A 208 FFQCVNG-KYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSG----VCIPSQYQCNGEVDCITGEDEVG 274 (565)
T ss_dssp -CBCTTS-CBCCTTSTTSSSCCSSSSSSSSSBSSCSSSCEEETTT----EEECGGGTTSSSCCSSSCTTSSS
T ss_pred eeECCCC-CccCHHHcCCCcccCCCCcccccccccCCCceecCCC----cccCccccCCCcccCCCCccccC
Confidence 4999988 6999999999999999999999988899999999986 59999999999999999999965
No 8
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.11 E-value=7.2e-12 Score=143.97 Aligned_cols=71 Identities=31% Similarity=0.550 Sum_probs=0.0
Q ss_pred CCCceeeCCC-CccccCCCccCCCCCCCCCCCCCCCC--CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDG-SKKFAKTQLNDDYCDCPDGTDEPGTS--ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 54 ~~~~F~C~dg-s~~Ip~s~vcDg~cDC~DGSDE~gt~--aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
..+.|+|.++ ..|||.+|+|||..||.|||||.+|. .|+.+.|+|.|+ .|||.++||||+.||.|||||.+
T Consensus 66 ~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~dC~dgsDE~~ 139 (791)
T 3m0c_C 66 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS 139 (791)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CcCccccCCCCCCEeeccccCCCCcCcCCCcccCCccCccccCCeEECCCC----CEECHHHcCCCcccCCCCccccc
Confidence 3568999873 37999999999999999999998874 598899999986 69999999999999999999964
No 9
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.93 E-value=3.4e-11 Score=102.16 Aligned_cols=70 Identities=24% Similarity=0.410 Sum_probs=55.5
Q ss_pred CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCCCCCCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 89 SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCP--NTCWEAGKVARDKLKKKIATYQEGVLLR 162 (608)
Q Consensus 89 ~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~~~~~C~--n~C~e~g~~~r~~~~~~~e~~~~G~~~R 162 (608)
.+|+.+.|+|.|.| .|||.+|||||+.||.|||||.. -..|+ ++|.......+..+.+.+..+..|+++|
T Consensus 7 ~~C~~~~f~C~~~g---~CIp~~~~CDg~~DC~DgsDE~~-~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~gLrkr 78 (80)
T 2kny_A 7 KTCGPSSFSCPGTH---VCVPERWLCDGDKDCADGADESI-AAGCLYNSTGSGSGSGSTEELRVRLASHLRKLRKR 78 (80)
T ss_dssp CCCSSSEEECTTSS---CEEEHHHHTTSSCCSSSSTTTSG-GGTCSSSSTTTTCSSCHHHHHHHHTTTTTTTTSSS
T ss_pred CCCCCCceecCCCC---eEcChhhcCCCCCCCCCCCcccc-ccCCCCCcccCcccchhhhHHHHHHHHHHHHHHHH
Confidence 46999999999755 69999999999999999999965 23587 7888877777776666666666665544
No 10
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.90 E-value=7.5e-10 Score=84.65 Aligned_cols=41 Identities=39% Similarity=0.728 Sum_probs=35.2
Q ss_pred CCCCCCCCceeccC-CCCCCcccccCccccCCCCCCCCCCCC
Q 007310 87 GTSACPNGKFYCQN-AGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 87 gt~aC~~~~F~C~n-~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
|+.+|+.+.|+|.+ .++...|||.+|||||+.||.|||||.
T Consensus 1 g~~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~ 42 (47)
T 1jrf_A 1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEW 42 (47)
T ss_dssp CCCCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTH
T ss_pred CCCCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccc
Confidence 56789999999996 233347999999999999999999995
No 11
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.69 E-value=8.6e-09 Score=77.16 Aligned_cols=36 Identities=39% Similarity=0.596 Sum_probs=32.5
Q ss_pred CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 90 ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 90 aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
.|+.+.|+|.|.| .|||.+|+|||+.||.|||||.+
T Consensus 3 ~C~~~~F~C~~~g---~CI~~~~~CDg~~DC~DgSDE~~ 38 (42)
T 1cr8_A 3 GCHTDEFQCRLDG---LCIPLRWRCDGDTDCMDSSDEKS 38 (42)
T ss_dssp CSSTTCEECTTTC---CEECGGGSSSSSCCSSSSTTTTT
T ss_pred CCCCCceEeCCCC---eEcChhhcCCCCcCCCCCCcccC
Confidence 5999999999755 69999999999999999999953
No 12
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.64 E-value=1.1e-08 Score=77.40 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=34.4
Q ss_pred CCCCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 87 GTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 87 gt~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
|+..|+.+.|+|.|+ .|||.+|+|||+.||.|||||..
T Consensus 1 G~~~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 1 GSHSCSSTQFKCNSG----RCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp CCSSSCTTEEECTTS----CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCCCCCCceEeCCC----CeEecCcccCCCCCCCCCCCCCC
Confidence 456799999999986 69999999999999999999965
No 13
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.62 E-value=1.8e-08 Score=75.73 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=33.1
Q ss_pred CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 89 SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 89 ~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
..|+.+.|+|.|.| .|||.+|||||+.||.|||||.+
T Consensus 5 ~~C~~~~f~C~~~g---~CI~~~~~CDg~~DC~DgSDE~~ 41 (43)
T 2jm4_A 5 VKCSLGYFPCGNIT---KCLPQLLHCNGVDDCGNQADEDN 41 (43)
T ss_dssp CSCCTTEEECSSSS---CEEEGGGTTSSCCCSSSCCTTSS
T ss_pred CCCCCCeeECCCCC---eEcCHhhccCCCCCCCCCcccCC
Confidence 46999999999944 69999999999999999999953
No 14
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.59 E-value=2.4e-08 Score=73.58 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=31.1
Q ss_pred CCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 91 CPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 91 C~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
|+.+.|+|.|. ...|||.+|+|||+.||.|||||.+
T Consensus 1 C~~~~f~C~~~--~g~Cip~~~~CDg~~DC~dgsDE~~ 36 (39)
T 3dpr_E 1 CRIHEISCGAH--STQCIPVSWRCDGENDCDSGEDEEN 36 (39)
T ss_dssp CCTTTCCCSSS--SSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred CCCCceecCCC--CCCEeCccccCCCcccCcCCccccc
Confidence 77889999982 1279999999999999999999953
No 15
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin, lectin, glycop lysosome, membrane, transmembrane, transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP: b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A* 3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A*
Probab=98.56 E-value=2.5e-08 Score=94.18 Aligned_cols=72 Identities=18% Similarity=0.392 Sum_probs=58.0
Q ss_pred hhhhhccccceeeec----CceeEeeccCCc---------ccccC--CCCccccccccccc---C-cceeeeecCCCc--
Q 007310 537 KEFYSFYGHCFESKQ----NKYVYKVCPYKK---------ATQEE--GHSTTRLGSWDKFE---D-SYHIMLFSNGDK-- 595 (608)
Q Consensus 537 ~ef~~L~~qCfe~~~----~eY~Y~lCpF~~---------~tQk~--gg~~t~LG~w~~w~---~-~ys~m~Y~~G~~-- 595 (608)
-.|.+|.++||+... ++|+|.||..+. +.|.. ++..++||+|..|. . ..-.|.|++|++
T Consensus 24 ~~L~pL~~~~f~~~~~~~~~~Y~Y~~nVCg~~~~~~~~ag~cQ~~~~~~~~~~iG~~~~~~~~~g~d~i~L~Y~~G~~~~ 103 (154)
T 2rl8_A 24 KRLTPLFQKSFESTVGQSPDMYSYVFRVCREAGQHSSGAGLVQIQKSNGKETVVGRFNETQIFQGSNWIMLIYKGGDEYD 103 (154)
T ss_dssp HHTGGGTTCCEECCCC---CCEEEEECSSSCCSSSSSCEEEEEEETTTCCEEEEEEEEEEEEEECSSEEEEEEEECCBCS
T ss_pred eccccccCCeeEEeeccCCCceEEEEEEecCCCCCCCCccEEEEecCCCceEEeeeccceEEEcCCceEEEEECCCcccc
Confidence 357789999999744 899999999999 77764 33456799999984 1 134579999999
Q ss_pred -CCCCCCcceEEEC
Q 007310 596 -CWNGPDRSMKVTL 608 (608)
Q Consensus 596 -CWNGP~RS~~V~L 608 (608)
||||++||+.|.|
T Consensus 104 s~c~~~~Rst~I~f 117 (154)
T 2rl8_A 104 NHCGREQRRAVVMI 117 (154)
T ss_dssp SSGGGCBCCEEEEE
T ss_pred cccCCCcceEEEEE
Confidence 8999999999975
No 16
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.54 E-value=1.5e-08 Score=85.86 Aligned_cols=58 Identities=19% Similarity=0.174 Sum_probs=44.2
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC---C---CCCCCCceeccCCCCCCcccccCcc
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG---T---SACPNGKFYCQNAGHSPLMIFSSKV 113 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g---t---~aC~~~~F~C~n~g~~~~~Ip~s~V 113 (608)
.++.|+|.++..|||.+|+|||..||.|||||.. + ..|....|.|.+.- -.+|+..+.
T Consensus 10 ~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~--~~ci~~~~~ 73 (80)
T 2kny_A 10 GPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEEL--RVRLASHLR 73 (80)
T ss_dssp SSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHH--HHHTTTTTT
T ss_pred CCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHH--HHHHHHHHH
Confidence 4678999854479999999999999999999973 2 35777888888830 146665543
No 17
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.53 E-value=3.5e-08 Score=76.68 Aligned_cols=38 Identities=29% Similarity=0.511 Sum_probs=33.1
Q ss_pred CCCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 88 TSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 88 t~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
...|+.+.|+|.+.| .|||.+|||||+.||.|||||..
T Consensus 4 ~~~C~~~~F~C~~~g---~CI~~~~~CDG~~DC~DgSDE~~ 41 (50)
T 2knx_A 4 GKTCGPSSFSCPGTH---VCVPERWLCDGDKDCADGADESI 41 (50)
T ss_dssp TCTTCTTEEEETTTT---EEEETTTTTSSSCCSTTCGGGSG
T ss_pred CCCCCCCcEEcCCCC---eEcChhhcCCCCCCCCCCCcccc
Confidence 456999999997433 79999999999999999999975
No 18
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=98.52 E-value=4.1e-08 Score=71.50 Aligned_cols=34 Identities=41% Similarity=0.508 Sum_probs=31.3
Q ss_pred CCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 91 CPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 91 C~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
|+.+.|+|.|+ .|||.+++|||+.||.|||||.+
T Consensus 2 C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~ 35 (37)
T 1ajj_A 2 CSAFEFHCLSG----ECIHSSWRCDGGPDCKDKSDEEN 35 (37)
T ss_dssp CCTTCEECTTS----CEECGGGTTSSSCCSTTCGGGTT
T ss_pred CCCCceEcCCC----CeechhhccCCCCCCCCCccccC
Confidence 88899999986 69999999999999999999953
No 19
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.51 E-value=3.2e-09 Score=105.15 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCceec--cCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 75 DYCDCPDGTDEPGTSACPNGKFYC--QNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 75 g~cDC~DGSDE~gt~aC~~~~F~C--~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
++.+|.|+|||.++..|+.+.|.| .|+ .|||.+|+|||..||.|||||.+
T Consensus 39 ~~~~c~d~sDE~~C~~C~~~~F~C~~~~g----~CIp~~~~CDG~~DC~DgSDE~~ 90 (215)
T 2gtl_O 39 KAGSLRHRVEELEDPSCDEHEHQCGGDDP----QCISKLFVCDGHNDCRNGEDEKD 90 (215)
T ss_dssp HHHHHHHHHHHHSCCSSCTTEEECCSSSC----CEEEGGGTTSSSCCSSSCHHHHC
T ss_pred ccccCCcchhhccCCCCCCcceeeCCCCC----cCccccccCCCCCcCCCcccccC
Confidence 456999999999998999999999 454 69999999999999999999965
No 20
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.48 E-value=3.1e-08 Score=77.79 Aligned_cols=38 Identities=34% Similarity=0.556 Sum_probs=33.9
Q ss_pred CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCCCC
Q 007310 89 SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGK 130 (608)
Q Consensus 89 ~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~~~ 130 (608)
..|+.+.|.|.|+ .|||.+|+|||+.||.|||||.+..
T Consensus 5 ~~C~~~~F~C~nG----~CIp~~~~CDG~~DC~DgSDE~~~~ 42 (52)
T 2m0p_A 5 ASCLDTQYTCDNH----QCISKNWVCDTDNDCGDGSDEKNCN 42 (52)
T ss_dssp CSSCSSEEECTTC----CEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred CCCCCCceECCCC----CEEecCccCCCCCCCCCCCccccch
Confidence 3599999999986 6999999999999999999997643
No 21
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.48 E-value=6.7e-08 Score=73.57 Aligned_cols=40 Identities=38% Similarity=0.608 Sum_probs=34.8
Q ss_pred CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCCCCCCCch
Q 007310 90 ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPN 135 (608)
Q Consensus 90 aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~~~~~C~n 135 (608)
.|+.+.|+|.|+ .|||.+|+|||+.||.|||||..- .|.+
T Consensus 5 ~C~~~~F~C~~g----~CI~~~~~CDG~~DC~DgSDE~~c--~C~~ 44 (45)
T 1d2l_A 5 QCQPGEFACANS----RCIQERWKCDGDNDCLDNSDEAPA--LCHQ 44 (45)
T ss_dssp BTTBTCEEETTT----EEECGGGTTTSSCTTTTCSTTSTT--TCCC
T ss_pred cCCCCceEcCCC----CeEehhhccCCCCCCCCCCCCCCC--cCCC
Confidence 588899999986 799999999999999999999763 4543
No 22
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.47 E-value=6.7e-08 Score=72.99 Aligned_cols=35 Identities=40% Similarity=0.513 Sum_probs=31.6
Q ss_pred CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 90 ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 90 aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
.|+.+.|.|.|+ .|||.+|+|||+.||.|||||.+
T Consensus 7 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 41 (44)
T 3a7q_B 7 ECEKDQFQCRNE----RCIPSVWRCDEDDDCLDHSDEDD 41 (44)
T ss_dssp -CCTTEEECTTS----CEEEGGGTTSSSCCSSSSTTTSC
T ss_pred CCCCCceEcCCC----CEeChhhccCCCCCCCCCccccC
Confidence 599899999995 69999999999999999999953
No 23
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.45 E-value=3.6e-08 Score=75.78 Aligned_cols=37 Identities=35% Similarity=0.602 Sum_probs=33.0
Q ss_pred CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 89 SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 89 ~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
..|+.+.|+|.|++ .|||.+|+|||+.||.|||||.+
T Consensus 5 ~~C~~~~F~C~~g~---~CI~~~~~CDG~~DC~DgSDE~~ 41 (48)
T 2i1p_A 5 LNCTSAQFKCADGS---SCINSRYRCDGVYDCRDNSDEAG 41 (48)
T ss_dssp CCCCSSSEECSSSS---CEECGGGSSSSSCCSSSSHHHHS
T ss_pred CCCCCCeeECCCCC---EeCCHhhcCCCCCCCCCCccccc
Confidence 35888999999974 59999999999999999999964
No 24
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.44 E-value=1.2e-07 Score=69.88 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.6
Q ss_pred CCceeeCC-CCccccCCCccCCCCCCCCCCCCCC
Q 007310 55 SNTIKCKD-GSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 55 ~~~F~C~d-gs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
...|+|.+ ...|||.+|+|||..||.|||||.+
T Consensus 3 ~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~ 36 (39)
T 3dpr_E 3 IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN 36 (39)
T ss_dssp TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred CCceecCCCCCCEeCccccCCCcccCcCCccccc
Confidence 56899998 2379999999999999999999987
No 25
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=98.44 E-value=8.1e-08 Score=69.92 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=30.2
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
....|+|.+| .|||.+++|||..||.|||||.+
T Consensus 3 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~ 35 (37)
T 1ajj_A 3 SAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEEN 35 (37)
T ss_dssp CTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTT
T ss_pred CCCceEcCCC-CeechhhccCCCCCCCCCccccC
Confidence 3578999998 69999999999999999999987
No 26
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.43 E-value=1.5e-07 Score=70.42 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=30.0
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
..+.|+|.++..|||.+++|||..||.|||||.+
T Consensus 5 ~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~ 38 (42)
T 1cr8_A 5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38 (42)
T ss_dssp STTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred CCCceEeCCCCeEcChhhcCCCCcCCCCCCcccC
Confidence 4678999863379999999999999999999976
No 27
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.39 E-value=6.6e-08 Score=74.33 Aligned_cols=35 Identities=37% Similarity=0.612 Sum_probs=31.6
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGT 88 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt 88 (608)
....|+|.+|..|||.+++|||..||.|||||.++
T Consensus 8 ~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C 42 (48)
T 2i1p_A 8 TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42 (48)
T ss_dssp CSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSS
T ss_pred CCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccC
Confidence 45789999986799999999999999999999873
No 28
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.38 E-value=1.1e-07 Score=72.60 Aligned_cols=39 Identities=36% Similarity=0.693 Sum_probs=32.0
Q ss_pred CCCCCceeccCC-CCCCcccccCccccCCCCCCCCCCCCC
Q 007310 90 ACPNGKFYCQNA-GHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 90 aC~~~~F~C~n~-g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
.|+.+.|+|.+. +....|||.+|+|||+.||.|||||.+
T Consensus 6 ~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~ 45 (47)
T 1k7b_A 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 45 (47)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred CCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence 598899999951 011279999999999999999999953
No 29
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.38 E-value=1.7e-07 Score=70.38 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=30.3
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
..+.|+|.++..|||.+++|||..||.|||||.+
T Consensus 8 ~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~ 41 (43)
T 2jm4_A 8 SLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN 41 (43)
T ss_dssp CTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred CCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence 3578999993379999999999999999999987
No 30
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.38 E-value=2e-07 Score=70.89 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=30.5
Q ss_pred CCceeeCCCCccccCCCccCCCCCCCCCCCCCCC
Q 007310 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGT 88 (608)
Q Consensus 55 ~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt 88 (608)
...|+|.+| .|||.+++|||.-||.|||||..+
T Consensus 8 ~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 8 PGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp BTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred CCceEcCCC-CeEehhhccCCCCCCCCCCCCCCC
Confidence 578999998 799999999999999999999874
No 31
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.38 E-value=1.4e-07 Score=73.33 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=33.2
Q ss_pred CCCceeeC-CCCccccCCCccCCCCCCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCK-DGSKKFAKTQLNDDYCDCPDGTDEPGTSACP 92 (608)
Q Consensus 54 ~~~~F~C~-dgs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~ 92 (608)
....|+|. +| .|||.+|+|||..||.|||||..+..|+
T Consensus 8 ~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~C~~C~ 46 (50)
T 2knx_A 8 GPSSFSCPGTH-VCVPERWLCDGDKDCADGADESIAAGCL 46 (50)
T ss_dssp CTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred CCCcEEcCCCC-eEcChhhcCCCCCCCCCCCccccccCCC
Confidence 46789996 66 7999999999999999999998866675
No 32
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.35 E-value=2e-07 Score=70.40 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
....|+|.+| .|||.+++|||..||.|||||.+
T Consensus 9 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~ 41 (44)
T 3a7q_B 9 EKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDD 41 (44)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSC
T ss_pred CCCceEcCCC-CEeChhhccCCCCCCCCCccccC
Confidence 3578999998 69999999999999999999987
No 33
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.29 E-value=1.3e-07 Score=74.33 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.3
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
..+.|+|.|| .|||.+|+|||.-||.|||||.+
T Consensus 8 ~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~ 40 (52)
T 2m0p_A 8 LDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKN 40 (52)
T ss_dssp CSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHS
T ss_pred CCCceECCCC-CEEecCccCCCCCCCCCCCcccc
Confidence 3578999998 69999999999999999999976
No 34
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.28 E-value=2.5e-07 Score=70.68 Aligned_cols=33 Identities=33% Similarity=0.650 Sum_probs=29.6
Q ss_pred CCCceeeC-----CCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCK-----DGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~-----dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
....|+|. +| .|||.+|+|||..||+|||||.+
T Consensus 8 ~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~~ 45 (47)
T 1k7b_A 8 PPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEWG 45 (47)
T ss_dssp STTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTGG
T ss_pred CCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccCC
Confidence 46789998 45 79999999999999999999976
No 35
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.26 E-value=3.4e-07 Score=69.86 Aligned_cols=34 Identities=29% Similarity=0.579 Sum_probs=29.6
Q ss_pred CCCceeeCC----CCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKD----GSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~d----gs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
..+.|+|.+ ...|||.+|+|||+.||.|||||.+
T Consensus 6 ~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~ 43 (47)
T 1jrf_A 6 PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 43 (47)
T ss_dssp CCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred CCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence 467899984 3379999999999999999999976
No 36
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=98.26 E-value=3.9e-07 Score=77.25 Aligned_cols=35 Identities=37% Similarity=0.480 Sum_probs=31.9
Q ss_pred CCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCC
Q 007310 89 SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 89 ~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
..|+.+.|+|.|+ .|||.+|||||+.||.|||||.
T Consensus 3 ~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~ 37 (82)
T 2fyj_A 3 RTCPPNQFSCASG----RCIPISWTCDLDDDCGDRSDES 37 (82)
T ss_dssp SSSCTTEEETTSS----CEEETTSSSSCSSSSCSTTTTT
T ss_pred CCCCCCceEeCCC----CEEeccccCCCcccCCCccccc
Confidence 3589899999985 6999999999999999999993
No 37
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.18 E-value=4.8e-07 Score=68.29 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=30.2
Q ss_pred CCCceeeCCCCccccCCCccCCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (608)
Q Consensus 54 ~~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~g 87 (608)
....|+|.+| .|||.+++|||..||.|||||..
T Consensus 6 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~ 38 (44)
T 1j8e_A 6 SSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETH 38 (44)
T ss_dssp CTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred CCCceEeCCC-CeEecCcccCCCCCCCCCCCCCC
Confidence 4678999998 69999999999999999999976
No 38
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=98.10 E-value=1.4e-06 Score=73.68 Aligned_cols=35 Identities=37% Similarity=0.628 Sum_probs=32.2
Q ss_pred CCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 90 ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 90 aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
.|+.+.|+|.|+ .|||.+|||||+.||.|||||.+
T Consensus 2 ~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~ 36 (80)
T 2fcw_B 2 TCSQAEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS 36 (80)
T ss_dssp CCCTTEEECTTS----CEEEGGGTTSSSCCSTTCTTTTT
T ss_pred CCCCCccCCCCC----CEEeeecccCCcccCCCcccccc
Confidence 488899999985 69999999999999999999965
No 39
>2kva_A Cation-independent mannose-6-phosphate receptor; transport, lysosome, sugar binding, glyco membrane, phosphoprotein, transmembrane, disulfide bond; NMR {Bos taurus} PDB: 2kvb_A
Probab=98.06 E-value=3.8e-06 Score=77.21 Aligned_cols=75 Identities=17% Similarity=0.351 Sum_probs=55.8
Q ss_pred CCchhhhhccccc-eeeecCceeEee----------ccCCccc-ccC--CCCccccccccc---ccCcceeeeecCCCcC
Q 007310 534 GPEKEFYSFYGHC-FESKQNKYVYKV----------CPYKKAT-QEE--GHSTTRLGSWDK---FEDSYHIMLFSNGDKC 596 (608)
Q Consensus 534 G~~~ef~~L~~qC-fe~~~~eY~Y~l----------CpF~~~t-Qk~--gg~~t~LG~w~~---w~~~ys~m~Y~~G~~C 596 (608)
|-.--|.+|.+.= |.....+|+|.| ||++... |.. ++...+||.|.. |.+.+.+|.|.+|+.|
T Consensus 23 g~~yDLs~L~~~~~y~~~~~~y~y~~niC~~~~~~~C~~~~~~Cq~~~~~~~~~~lG~~~~~~~~~~~~l~l~Y~~G~~C 102 (148)
T 2kva_A 23 GFSFDLTPLTKKDAYKVETDKYEFHINVCGPVSVGACPPDSGACQVSRSDRKSWNLGRSNAKLSYYDGMIQLTYRDGTPY 102 (148)
T ss_dssp TEEEECGGGCCTTCEEEECSSEEEEECSSBCCCCTTSCTTEEEEEEESSSCCEEEEEECBCCEEEETTEEEEEEBCCCCC
T ss_pred CCEEEChhccCCCCEEEeCCCeEEEEEeCCCCCcCccCCCCeEEEEcCCCCceEEeeecCCCcEEcCCeEEEEECCCCcC
Confidence 3334455666554 666677788764 6665544 663 456889999988 7778899999999999
Q ss_pred CCCC--CcceEEEC
Q 007310 597 WNGP--DRSMKVTL 608 (608)
Q Consensus 597 WNGP--~RS~~V~L 608 (608)
|||| .|||.|.|
T Consensus 103 ~~~~~~~rst~I~f 116 (148)
T 2kva_A 103 NNEKRTPRATLITF 116 (148)
T ss_dssp SCTTCCCCEEEEEE
T ss_pred CCCCCceeEEEEEE
Confidence 9998 69999875
No 40
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.92 E-value=3.1e-06 Score=83.98 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=33.0
Q ss_pred CCCCCCCCceeccC-CCCCCcccccCccccCCCCCCCCCCCC
Q 007310 87 GTSACPNGKFYCQN-AGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 87 gt~aC~~~~F~C~n-~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
....|+.+.|.|.| .| .|||.+|+|||..||.|||||.
T Consensus 50 ~~~~C~~~~F~C~~~~g---~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 50 EEHHCDEHESECRGDVP---ECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp SCCCCCTTEEECSSSSC---CEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCCCCCCCceecCCCCC---cEechhhccCCCCCCCCCCccc
Confidence 34459989999986 44 6999999999999999999996
No 41
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.92 E-value=2.4e-06 Score=84.67 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=36.9
Q ss_pred CCCceee--CCCCccccCCCccCCCCCCCCCCCCCCCC--CCCCCceec
Q 007310 54 SSNTIKC--KDGSKKFAKTQLNDDYCDCPDGTDEPGTS--ACPNGKFYC 98 (608)
Q Consensus 54 ~~~~F~C--~dgs~~Ip~s~vcDg~cDC~DGSDE~gt~--aC~~~~F~C 98 (608)
..+.|+| .+| .|||.+|+|||..||.|||||.+|. .|+...|.|
T Consensus 56 ~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c 103 (215)
T 2gtl_O 56 DEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG 103 (215)
T ss_dssp CTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEE
T ss_pred CCcceeeCCCCC-cCccccccCCCCCcCCCcccccCCCCCCcCCCceee
Confidence 4678999 567 7999999999999999999997653 587777776
No 42
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.86 E-value=3.6e-06 Score=83.49 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=29.0
Q ss_pred CCCceeeCC-CCccccCCCccCCCCCCCCCCCCC
Q 007310 54 SSNTIKCKD-GSKKFAKTQLNDDYCDCPDGTDEP 86 (608)
Q Consensus 54 ~~~~F~C~d-gs~~Ip~s~vcDg~cDC~DGSDE~ 86 (608)
.++.|+|.| +..|||.+|+|||..||+|||||.
T Consensus 55 ~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~ 88 (217)
T 2gtl_M 55 DEHESECRGDVPECIHDLLFCDGEKDCRDGSDED 88 (217)
T ss_dssp CTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred CCCceecCCCCCcEechhhccCCCCCCCCCCccc
Confidence 467899975 237999999999999999999996
No 43
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.71 E-value=1.8e-05 Score=78.33 Aligned_cols=48 Identities=17% Similarity=0.145 Sum_probs=36.4
Q ss_pred CCCceeeC-CCCccccCCCccCCCCCCCCCCCCC--CC--C-CCCC--CceeccCC
Q 007310 54 SSNTIKCK-DGSKKFAKTQLNDDYCDCPDGTDEP--GT--S-ACPN--GKFYCQNA 101 (608)
Q Consensus 54 ~~~~F~C~-dgs~~Ip~s~vcDg~cDC~DGSDE~--gt--~-aC~~--~~F~C~n~ 101 (608)
..+.|+|. ++..|||.+|+|||..||+|||||. .| . .|++ .++.|.+.
T Consensus 54 ~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d 109 (220)
T 2gtl_N 54 EKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWH 109 (220)
T ss_dssp CTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEEC
T ss_pred CCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCC
Confidence 46789995 3337999999999999999999995 43 2 4543 35667765
No 44
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=97.57 E-value=2.1e-05 Score=87.07 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=47.4
Q ss_pred CCceeeCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 55 ~~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
...|.|..+. +++-++.||+.-+|.+++++. |++..|.|.|+ .|||..++|||+.||.|||||.+
T Consensus 173 ~sl~~C~~~~-~~~~~h~~DagV~C~~~~~~c----~~~~~~~C~~~----~ci~~~~~Cdg~~dC~d~sDE~~ 237 (565)
T 2xrc_A 173 TSLAECTFTK-RRTMGYQDFADVVCYTQKADS----PMDDFFQCVNG----KYISQMKACDGINDCGDQSDELC 237 (565)
T ss_dssp SCGGGSEEEC-CCCCSSCCCCEEEBCCC-------------CBCTTS----CBCCTTSTTSSSCCSSSSSSSSS
T ss_pred CchhhcccCc-ccccccccCCceeccccccCC----CCcCeeECCCC----CccCHHHcCCCcccCCCCccccc
Confidence 4567786543 677778889888898776541 34456999886 69999999999999999999975
No 45
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.56 E-value=3.2e-05 Score=76.64 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=30.9
Q ss_pred CCCCCceeccC-CCCCCcccccCccccCCCCCCCCCCCC
Q 007310 90 ACPNGKFYCQN-AGHSPLMIFSSKVNDGICDCCDGSDEY 127 (608)
Q Consensus 90 aC~~~~F~C~n-~g~~~~~Ip~s~VcDGicDCcDGSDE~ 127 (608)
.|+.+.|.|.+ .| .|||.+|||||..||.|||||.
T Consensus 52 ~C~~~eFqC~~~~g---~CIp~~wvCDG~~DC~DGSDE~ 87 (220)
T 2gtl_N 52 HCEKRTFQCGGNEQ---ECISDLLVCDGHKDCHNAHDED 87 (220)
T ss_dssp SSCTTEEECCSSSC---CEEETTTTTSSSCCSTTCTTSC
T ss_pred CCCCCccCcCCCCC---cEeCcceecCCCCCCCCCCccC
Confidence 48889999963 33 6999999999999999999996
No 46
>1gp0_A Cation-independent mannose-6-phosphate receptor; insulin-like growth factor, transport, beta barrel; 1.4A {Homo sapiens} SCOP: b.64.1.1 PDB: 1e6f_A 1gp3_A 1gqb_A 2cnj_D 2l29_A 2l2a_A
Probab=97.53 E-value=4.6e-05 Score=70.07 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=35.1
Q ss_pred CCCcccccccccc---cCcceeeeecCCCcCCC--CCCcceEEEC
Q 007310 569 GHSTTRLGSWDKF---EDSYHIMLFSNGDKCWN--GPDRSMKVTL 608 (608)
Q Consensus 569 gg~~t~LG~w~~w---~~~ys~m~Y~~G~~CWN--GP~RS~~V~L 608 (608)
++..++||.|..| .+.+.+|.|.+|+.||| |+.|||.|.|
T Consensus 61 ~~~~~slG~~~~~~~~~~~~l~L~Y~~G~~C~~~~g~~rst~I~f 105 (143)
T 1gp0_A 61 GQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISF 105 (143)
T ss_dssp TTTCCBSCBCCCCCEEETTEEEEEECCCSBCSSSTTCBCEEEEEE
T ss_pred CCCcEEcccccceEEEECCEEEEEECCCCcCCCCCCceeEEEEEE
Confidence 4568899999998 36889999999999997 8999999975
No 47
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.23 E-value=0.00013 Score=80.74 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=36.3
Q ss_pred CceeeC-CCCccccCCCccCCCCCCCCCCCCCCCCCCCCCceeccCC
Q 007310 56 NTIKCK-DGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNA 101 (608)
Q Consensus 56 ~~F~C~-dgs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~F~C~n~ 101 (608)
..|+|. || .|||.+++|||..||.|||||.+ |+...+.|...
T Consensus 69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~---c~~~~~~C~~~ 111 (537)
T 3ojy_B 69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEAN---CRRIYKKCQHE 111 (537)
T ss_dssp SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSS---CSSCSSCCSSC
T ss_pred CccCcCCCC-cEeeccccCCCCCCCCCcccccc---CCCCCCccccC
Confidence 689998 78 69999999999999999999987 55556688764
No 48
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.15 E-value=0.00021 Score=79.46 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=35.9
Q ss_pred CceeeC-CCCccccCCCccCCCCCCCCCCCCCCCCCCCCCceeccCC
Q 007310 56 NTIKCK-DGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNA 101 (608)
Q Consensus 56 ~~F~C~-dgs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~F~C~n~ 101 (608)
..|+|. +| .|||.+++|||..||.|||||.+|..++...+.|.+.
T Consensus 68 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~~ 113 (554)
T 3ojy_A 68 QDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQY 113 (554)
T ss_dssp SSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCSCCCCCTTTTTS
T ss_pred CcCccCCCC-EEcccccccCCcccCCCccccccCCCCCCCccccccc
Confidence 689998 78 6999999999999999999998754433234567553
No 49
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=96.88 E-value=0.00072 Score=74.86 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=28.7
Q ss_pred Cceecc-CCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 94 GKFYCQ-NAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 94 ~~F~C~-n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
..|.|. |+ +|||..|+|||..||.|||||.+
T Consensus 69 ~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sdE~~ 100 (537)
T 3ojy_B 69 EGFVCAQTG----RCVNRRLLCNGDNDCGDQSDEAN 100 (537)
T ss_dssp SSEECTTTC----CEECGGGTTSSSCCSSSSCTTSS
T ss_pred CccCcCCCC----cEeeccccCCCCCCCCCcccccc
Confidence 799999 75 69999999999999999999965
No 50
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=96.70 E-value=0.001 Score=73.96 Aligned_cols=33 Identities=39% Similarity=0.659 Sum_probs=29.9
Q ss_pred CCCCceecc-CCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 91 CPNGKFYCQ-NAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 91 C~~~~F~C~-n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
|+ ..|.|. |+ +|||..++|||..||.|||||.+
T Consensus 66 c~-~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sDE~~ 99 (554)
T 3ojy_A 66 CG-QDFQCKETG----RCLKRHLVCNGDQDCLDGSDEDD 99 (554)
T ss_dssp CS-SSEECSSSC----CEECGGGTTSSSCCSSSCTTSSS
T ss_pred CC-CcCccCCCC----EEcccccccCCcccCCCcccccc
Confidence 66 799999 65 69999999999999999999965
No 51
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=93.92 E-value=0.021 Score=66.79 Aligned_cols=41 Identities=29% Similarity=0.601 Sum_probs=33.8
Q ss_pred CceeeCCCCccccCCCccCCCCCCCCCCCCCCCCCCCCCceeccC
Q 007310 56 NTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQN 100 (608)
Q Consensus 56 ~~F~C~dgs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~F~C~n 100 (608)
..|+|.+| .||+.+++|||..||.|||||.+ |+...--|..
T Consensus 121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~---C~~~~~~C~~ 161 (913)
T 3t5o_A 121 NKFRCDSG-RCIARKLECNGENDCGDNSDERD---CGRTKAVCTR 161 (913)
T ss_dssp SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTT---CSSCCCSSSS
T ss_pred cccccCCC-ceEccceecCCcccCCCcccccc---CCCCCCcccc
Confidence 56999998 69999999999999999999977 5544445643
No 52
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=93.87 E-value=0.032 Score=65.33 Aligned_cols=33 Identities=39% Similarity=0.639 Sum_probs=29.3
Q ss_pred CCCCceeccCCCCCCcccccCccccCCCCCCCCCCCCC
Q 007310 91 CPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYD 128 (608)
Q Consensus 91 C~~~~F~C~n~g~~~~~Ip~s~VcDGicDCcDGSDE~~ 128 (608)
|+ ..|.|.|+ +||+..++|||..||.|||||.+
T Consensus 119 C~-~~F~C~~g----~ci~~~~~c~g~~dC~d~sde~~ 151 (913)
T 3t5o_A 119 CK-NKFRCDSG----RCIARKLECNGENDCGDNSDERD 151 (913)
T ss_dssp CS-SEEECTTS----CEEEGGGSSSSSCCSSSSGGGTT
T ss_pred cc-cccccCCC----ceEccceecCCcccCCCcccccc
Confidence 54 67999985 69999999999999999999954
No 53
>2lla_A Mannose-6-phosphate/insulin-like growth factor II; monotreme, IGF-II, domain 11, transport; NMR {Tachyglossus aculeatus}
Probab=84.75 E-value=0.9 Score=40.80 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=28.3
Q ss_pred Ccccccccccc---cCcceeeeecCCCcCCCCC--CcceEEEC
Q 007310 571 STTRLGSWDKF---EDSYHIMLFSNGDKCWNGP--DRSMKVTL 608 (608)
Q Consensus 571 ~~t~LG~w~~w---~~~ys~m~Y~~G~~CWNGP--~RS~~V~L 608 (608)
...+||.+..= .+.--+|.|.+|+.|.+|+ +||+.|.+
T Consensus 60 ~~~~~G~~~~~~~~~~~~l~L~Y~~G~~C~~~~~~~~st~I~F 102 (140)
T 2lla_A 60 TGIKAGKWNQKLSYVDQVLQLVYEDGDPCPANLHLKYKSVISF 102 (140)
T ss_dssp TTEEEEECCCCEEEETTEEEEEEBCCCBCTTTSSCBCEEEEEE
T ss_pred CCcccceeccccEEeCCEEEEEEcCCCcCCCCCCceeEEEEEE
Confidence 46778887541 3445689999999999986 47888764
No 54
>2l21_A Cation-independent mannose-6-phosphate receptor; genomic imprinting, insulin-like growth factor 2, mannose 6 receptor, protein evolution; NMR {Gallus gallus}
Probab=64.36 E-value=3 Score=38.57 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=30.2
Q ss_pred cccCCCCccccccccc---ccCcceeeeecCCCcCC--CCCCcceEEEC
Q 007310 565 TQEEGHSTTRLGSWDK---FEDSYHIMLFSNGDKCW--NGPDRSMKVTL 608 (608)
Q Consensus 565 tQk~gg~~t~LG~w~~---w~~~ys~m~Y~~G~~CW--NGP~RS~~V~L 608 (608)
-|..++..++||.... |.+.--++.|.+|+.|- +|-.|||.|.+
T Consensus 60 C~~~~~~~~slG~~~~~l~~~~~~l~L~Y~~Gs~C~~~~~~~rsT~I~F 108 (154)
T 2l21_A 60 CITDGPKTLNAGKLSKTLTYEDQVLKLVYEDGDPCPTDLKMKHKSYFSF 108 (154)
T ss_dssp EEEETTEEEEEEECCCCCEEETTEEEEEEECCCCCSSCSSSCCEEEEEE
T ss_pred EEECCCCeEEcccccceEEEeCCEEEEEECCCCcCCCCCCCEEEEEEEE
Confidence 3433445678898663 12444588999999995 45689998864
No 55
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.52 E-value=1e+02 Score=41.38 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 143 VARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEA 178 (608)
Q Consensus 143 ~~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~ 178 (608)
+-|..+..+...++.|+..=.+-.++...++.++..
T Consensus 1910 ~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~ 1945 (3245)
T 3vkg_A 1910 EKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQ 1945 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666666544444444444333333
No 56
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.12 E-value=95 Score=34.51 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=10.9
Q ss_pred CCCchhhHHHHHHH
Q 007310 131 VKCPNTCWEAGKVA 144 (608)
Q Consensus 131 ~~C~n~C~e~g~~~ 144 (608)
+.||+.|.-.+-.-
T Consensus 43 vkCPSGCrLQglLd 56 (562)
T 3ghg_A 43 YKCPSGCRMKGLID 56 (562)
T ss_dssp TEEECHHHHHHHHH
T ss_pred CCCCcccchhhhHH
Confidence 68999998877533
No 57
>1q25_A CI, cation-independent mannose 6-phosphate receptor, MAN-6-P receptor, CI-MPR; P-lectin, protein transport,S binding protein; HET: MAN BMA NAG; 1.80A {Bos taurus} SCOP: b.64.1.1 b.64.1.1 b.64.1.1 PDB: 1syo_A* 1sz0_A*
Probab=61.68 E-value=8.9 Score=40.93 Aligned_cols=37 Identities=16% Similarity=0.350 Sum_probs=28.0
Q ss_pred cccccccc--cc--cCcceeeeecCCCcCCCCCCcceEEEC
Q 007310 572 TTRLGSWD--KF--EDSYHIMLFSNGDKCWNGPDRSMKVTL 608 (608)
Q Consensus 572 ~t~LG~w~--~w--~~~ys~m~Y~~G~~CWNGP~RS~~V~L 608 (608)
..+||.+. .+ .+.--+|.|.+|+.|-||-.||+.|.|
T Consensus 357 ~~~~G~~~~~~~~~~~~~l~L~Y~~G~~C~~~~~rst~I~f 397 (432)
T 1q25_A 357 VKVAGRPQNLTLRYSDGDLTLIYFGGEECSSGFQRMSVINF 397 (432)
T ss_dssp EEECCCTTSEEEEEETTEEEEEECCCCBCTTSCBCEEEEEE
T ss_pred eEEeeEecccCEEEeCCeEEEEECCCCcCCCCCeeEEEEEE
Confidence 35688773 22 233368999999999999999999874
No 58
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=57.47 E-value=78 Score=26.99 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007310 162 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLK 198 (608)
Q Consensus 162 R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le 198 (608)
|+...++..++|..+..+|..-+.+++.++..++..+
T Consensus 35 rqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENEISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555554555555555544444444433
No 59
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=53.59 E-value=1e+02 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 174 VKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (608)
Q Consensus 174 ~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~ 206 (608)
..+..--.+|+.....|+..+.+|+.+..++++
T Consensus 28 ~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ 60 (78)
T 3iv1_A 28 NALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 333334445556666666666666665555544
No 60
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.30 E-value=1.6e+02 Score=32.15 Aligned_cols=19 Identities=37% Similarity=0.744 Sum_probs=12.8
Q ss_pred CCCCCCCCCCchhhHHHHHH
Q 007310 124 SDEYDGKVKCPNTCWEAGKV 143 (608)
Q Consensus 124 SDE~~~~~~C~n~C~e~g~~ 143 (608)
+||--+ +.||+.|.=.+-.
T Consensus 38 aDeDwG-vkCPSGCrLqglL 56 (491)
T 1m1j_A 38 VDDDWG-TKCPSGCRMQGII 56 (491)
T ss_dssp CTTSTT-TEECCSTTHHHHH
T ss_pred cccccc-CCCCCccchhhHH
Confidence 455333 6899999877753
No 61
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.77 E-value=80 Score=34.51 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=9.3
Q ss_pred CCCchhhHHHHH
Q 007310 131 VKCPNTCWEAGK 142 (608)
Q Consensus 131 ~~C~n~C~e~g~ 142 (608)
++||.+|.-+..
T Consensus 79 ~~CPTtC~l~D~ 90 (464)
T 1m1j_B 79 VLCPTGCELQTT 90 (464)
T ss_dssp EEEECTTHHHHH
T ss_pred CcCCCccHHHHH
Confidence 689999987544
No 62
>2l2g_A IGF2R domain 11; insulin-like growth factor 2, mannose 6 phosphate receptor, imprinting, protein evolution, signaling protein; NMR {Monodelphis domestica}
Probab=49.57 E-value=11 Score=34.78 Aligned_cols=39 Identities=15% Similarity=0.372 Sum_probs=27.8
Q ss_pred CCcccccccccc---cCcceeeeecCCCcCCCC--CCcceEEEC
Q 007310 570 HSTTRLGSWDKF---EDSYHIMLFSNGDKCWNG--PDRSMKVTL 608 (608)
Q Consensus 570 g~~t~LG~w~~w---~~~ys~m~Y~~G~~CWNG--P~RS~~V~L 608 (608)
+..++||....= .+.--+|.|.+|+.|-++ -.|||.|.+
T Consensus 62 ~~~~s~G~~~~~l~~~~~~l~L~Y~~Gs~C~~~~~~~rst~I~F 105 (151)
T 2l2g_A 62 LTKINAGSWNSQLMYVDQVLQLVYDDGAPCPSKNALKYKSVISF 105 (151)
T ss_dssp SSCCEEEECCCCEEEETTEEEEEECSCSBCCSSSSSBCEEEEEE
T ss_pred CCceEeeecccceEEECCEEEEEECCCCCCCCCCCceeEEEEEE
Confidence 456788877642 234458899999999764 468888864
No 63
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.56 E-value=2.8e+02 Score=29.68 Aligned_cols=21 Identities=33% Similarity=0.827 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCchhhHHHH
Q 007310 119 DCCDGSDEYDGKVKCPNTCWEAG 141 (608)
Q Consensus 119 DCcDGSDE~~~~~~C~n~C~e~g 141 (608)
.||-..++.+ ++||.+|.-.-
T Consensus 7 ~c~~~~~~~G--~~CPT~C~i~d 27 (409)
T 1m1j_C 7 NCCILDERFG--SYCPTTCGIAD 27 (409)
T ss_dssp TSSSCCGGGC--CEEECTTHHHH
T ss_pred CcccCCcccC--CcCCCcccHHH
Confidence 4777777766 58999997543
No 64
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.34 E-value=1.3e+02 Score=32.46 Aligned_cols=22 Identities=32% Similarity=0.739 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCCCchhhHHHHH
Q 007310 119 DCCDGSDEYDGKVKCPNTCWEAGK 142 (608)
Q Consensus 119 DCcDGSDE~~~~~~C~n~C~e~g~ 142 (608)
.||-.+++.+ ++||.+|.=.-.
T Consensus 7 ~c~~~~~~fG--~~CPTtCgl~d~ 28 (411)
T 3ghg_C 7 NCCILDERFG--SYCPTTCGIADF 28 (411)
T ss_dssp -------CCS--CEEECSHHHHHH
T ss_pred CceecCcccC--CcCCCcchHHHH
Confidence 4777777765 699999976543
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.57 E-value=1.8e+02 Score=26.26 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007310 185 NEEKILKGLVQQLKERKE 202 (608)
Q Consensus 185 ~e~~~le~~ve~le~~k~ 202 (608)
+.+++|+.++..|.....
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555555544433
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=42.15 E-value=1.4e+02 Score=26.92 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 007310 179 ELSNLKNEEKILKGLVQQLKE 199 (608)
Q Consensus 179 ~l~~Lk~e~~~le~~ve~le~ 199 (608)
++.+|+.+|+.|...+..+.+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~a 92 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASA 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.70 E-value=2.8e+02 Score=29.64 Aligned_cols=12 Identities=42% Similarity=0.947 Sum_probs=9.7
Q ss_pred CCCchhhHHHHH
Q 007310 131 VKCPNTCWEAGK 142 (608)
Q Consensus 131 ~~C~n~C~e~g~ 142 (608)
+.||+.|.=.+-
T Consensus 46 ~kCPsGCrLqg~ 57 (390)
T 1deq_A 46 TKCPSGCRMKGL 57 (390)
T ss_pred CCCCccchHHHH
Confidence 689999987664
No 68
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.21 E-value=64 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007310 498 KSDAARVRKEYDESSDKLSKIQSRISSLTQKLKH 531 (608)
Q Consensus 498 ~~~a~~aR~~~~eae~~l~~le~~I~~le~~L~~ 531 (608)
..++..+|.+..+.+.++..|..++.++..+|..
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999988863
No 69
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.08 E-value=1.1e+02 Score=25.38 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=6.8
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 007310 177 EAELSNLKNEEKILKGLV 194 (608)
Q Consensus 177 ~~~l~~Lk~e~~~le~~v 194 (608)
+++|.++..++..|+.++
T Consensus 46 Ek~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 46 ELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 70
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=35.31 E-value=1.7e+02 Score=30.73 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 007310 170 KQNLVKDEAELSNLKNEEKILK 191 (608)
Q Consensus 170 k~~r~e~~~~l~~Lk~e~~~le 191 (608)
......++.+|.++++....++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~ 417 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVE 417 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHH
Confidence 3334444444555544444433
No 71
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.02 E-value=39 Score=37.60 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 007310 169 AKQNLVKDEAELSNLKNEEKILK 191 (608)
Q Consensus 169 gk~~r~e~~~~l~~Lk~e~~~le 191 (608)
+.+.+.+++.++..++.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQEEMERSQ 355 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444445555544444444333
No 72
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.67 E-value=2.7e+02 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=8.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 007310 178 AELSNLKNEEKILKGLVQQLK 198 (608)
Q Consensus 178 ~~l~~Lk~e~~~le~~ve~le 198 (608)
.++.++..++..|+..+..++
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~ 102 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444433333333
No 73
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.98 E-value=2.2e+02 Score=24.21 Aligned_cols=37 Identities=27% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 007310 166 IEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 202 (608)
Q Consensus 166 ie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~ 202 (608)
+..+..--..+..++..|+.++..++...++|+...+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555666677777666666666666533
No 74
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=33.80 E-value=2.4e+02 Score=24.60 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.7
Q ss_pred hHHHHH
Q 007310 137 CWEAGK 142 (608)
Q Consensus 137 C~e~g~ 142 (608)
|.+.-+
T Consensus 16 CrNvT~ 21 (99)
T 3ni0_A 16 CRNTTH 21 (99)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 444443
No 75
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.54 E-value=5.1e+02 Score=35.01 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007310 159 VLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQL 197 (608)
Q Consensus 159 ~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~l 197 (608)
+..++..+..|..+..+-...+.+|+.++..++.++++.
T Consensus 1915 l~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1915 LEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445566666666666666666666555544444
No 76
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.94 E-value=2.2e+02 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 007310 176 DEAELSNLKNEEKILKGLVQQLKE 199 (608)
Q Consensus 176 ~~~~l~~Lk~e~~~le~~ve~le~ 199 (608)
++-++.+|+.+...|....++++.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444433
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.83 E-value=4.4e+02 Score=27.47 Aligned_cols=15 Identities=7% Similarity=0.317 Sum_probs=6.5
Q ss_pred HHHHHHHHHhHHHHH
Q 007310 173 LVKDEAELSNLKNEE 187 (608)
Q Consensus 173 r~e~~~~l~~Lk~e~ 187 (608)
..+.++.+.++++.-
T Consensus 406 ~~~~~~~~~~~~~~~ 420 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQA 420 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHh
Confidence 344444444444443
No 78
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.18 E-value=92 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007310 159 VLLRKKEIEQAKQNLVKDEAELSNLKNEEKI 189 (608)
Q Consensus 159 ~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~ 189 (608)
++.|..+|..-.+...++...+..|+.++..
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 79
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=29.85 E-value=2.6e+02 Score=23.75 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 007310 182 NLKNEEKILKGLVQQL 197 (608)
Q Consensus 182 ~Lk~e~~~le~~ve~l 197 (608)
.|+.+-..|+.+|++|
T Consensus 47 ~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 47 ELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 80
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=27.70 E-value=63 Score=28.33 Aligned_cols=47 Identities=4% Similarity=0.062 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhhhccccceeeecCceeE
Q 007310 505 RKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVY 556 (608)
Q Consensus 505 R~~~~eae~~l~~le~~I~~le~~L~~dfG~~~ef~~L~~qCfe~~~~eY~Y 556 (608)
++++...+++++.|+.++..+...+.. ..|..+.+.||-+.....+|
T Consensus 3 ~~~l~~l~~~~~~l~~~l~~l~~~~~~-----~~w~~~~~~Cy~~~~~~~tw 49 (149)
T 1rtm_1 3 EVKLANMEAEINTLKSKLELTNKLHAF-----SMGKKSGKKFFVTNHERMPF 49 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTTCCTTSCEEEEEEEEEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcC-----CCeEEeCCEEEEEeCCCCCH
Confidence 455666667777777777777665432 34666788899887654443
No 81
>2v5o_A Cation-independent mannose-6-phosphate receptor; membrane, lysosome, transport, beta barrel, phosphorylation, fibronec II; HET: NAG; 2.91A {Homo sapiens} PDB: 2v5p_A* 2v5n_A*
Probab=27.66 E-value=32 Score=38.67 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=30.2
Q ss_pred CCCccccccccc---ccCcceeeeecCCCcCC--CCCCcceEEEC
Q 007310 569 GHSTTRLGSWDK---FEDSYHIMLFSNGDKCW--NGPDRSMKVTL 608 (608)
Q Consensus 569 gg~~t~LG~w~~---w~~~ys~m~Y~~G~~CW--NGP~RS~~V~L 608 (608)
++..++||.+.+ |.+.-.++.|.+|+.|= +|..||+.|.+
T Consensus 61 ~~~~~slG~~~~~l~~~~~~l~L~Y~~G~~C~~~~~~~~sT~I~f 105 (627)
T 2v5o_A 61 GQTRISVGKANKRLRYVDQVLQLVYKDGSPCPSKSGLSYKSVISF 105 (627)
T ss_dssp STTCCEEEBCCCCEEEETTEEEEEEBSCSBCSSSTTCBCEEEEEE
T ss_pred cCccEecccccceeEEECCEEEEEECCCCcCCCCCCceEEEEEEE
Confidence 456788998763 34555688999999997 46789998864
No 82
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=27.27 E-value=81 Score=24.33 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007310 499 SDAARVRKEYDESSDKLSKIQSRISSLTQK 528 (608)
Q Consensus 499 ~~a~~aR~~~~eae~~l~~le~~I~~le~~ 528 (608)
.+--.+|+..++.++.|+.+...|..|++.
T Consensus 7 eqWv~~Rkk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 7 EQWVSGRKKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344578999999999999999999999875
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.98 E-value=3.4e+02 Score=24.18 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007310 148 LKKKIATYQEGVLLRKKEIEQAK 170 (608)
Q Consensus 148 ~~~~~e~~~~G~~~R~elie~gk 170 (608)
++.+.....+.+..|+..|.+.+
T Consensus 29 L~~~L~~AEeaL~~Kq~~idelk 51 (110)
T 2v4h_A 29 LRQQLQQAEEALVAKQELIDKLK 51 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444454555444433
No 84
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.51 E-value=2e+02 Score=25.06 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007310 167 EQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERK 201 (608)
Q Consensus 167 e~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k 201 (608)
..+-....+++.+|..|..++..|+.....++..+
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LR 77 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLR 77 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444555556666666666655555555554443
No 85
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.10 E-value=75 Score=21.16 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 007310 510 ESSDKLSKIQSRISSLTQKLK 530 (608)
Q Consensus 510 eae~~l~~le~~I~~le~~L~ 530 (608)
+.=+.|.+||..++.++++|.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344556778888888887774
No 86
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.55 E-value=2.3e+02 Score=30.91 Aligned_cols=19 Identities=26% Similarity=0.686 Sum_probs=13.9
Q ss_pred CCCCCCCCCCCCCCchhhHHH
Q 007310 120 CCDGSDEYDGKVKCPNTCWEA 140 (608)
Q Consensus 120 CcDGSDE~~~~~~C~n~C~e~ 140 (608)
||-.+++.+ ++||.+|.-.
T Consensus 65 c~~~~~~fG--~yCPTtCgla 83 (461)
T 3ghg_B 65 CLHADPDLG--VLCPTGCQLQ 83 (461)
T ss_dssp CBCSSTTTC--BCEECHHHHH
T ss_pred ccccCcccC--CcCCCcchHH
Confidence 666666655 6999999754
No 87
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.60 E-value=3.2e+02 Score=22.70 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 007310 182 NLKNEEKILKGLVQQL 197 (608)
Q Consensus 182 ~Lk~e~~~le~~ve~l 197 (608)
.|+.+-..|+.+|..|
T Consensus 47 ~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 47 ELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 88
>1hvw_A Omega-ACTX-HV1A, omega-atracotoxin-HV1A; cystine knot, beta-hairpin; NMR {Synthetic} SCOP: g.3.6.2
Probab=23.24 E-value=39 Score=22.81 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=14.1
Q ss_pred ccccCccccCCCCCCCCC
Q 007310 107 MIFSSKVNDGICDCCDGS 124 (608)
Q Consensus 107 ~Ip~s~VcDGicDCcDGS 124 (608)
|||+.+.|-+--.||-||
T Consensus 1 C~psgq~Cp~~e~CCSGs 18 (26)
T 1hvw_A 1 CIPSGQPCPYNENCCSQS 18 (26)
T ss_dssp CBCTTSBCSSTTSBSSCC
T ss_pred CccCCCcCCCCccccccc
Confidence 577788888877788877
No 89
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.21 E-value=3.3e+02 Score=22.84 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 007310 176 DEAELSNLKNEEKILKGLVQQLKER 200 (608)
Q Consensus 176 ~~~~l~~Lk~e~~~le~~ve~le~~ 200 (608)
++.+|..|+.+...|+......+..
T Consensus 46 ~~eEi~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 46 KDSEIARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444444443
No 90
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.37 E-value=1.5e+02 Score=20.53 Aligned_cols=14 Identities=36% Similarity=0.259 Sum_probs=5.3
Q ss_pred HhHHHHHHHHHHHH
Q 007310 181 SNLKNEEKILKGLV 194 (608)
Q Consensus 181 ~~Lk~e~~~le~~v 194 (608)
..|++++..|+-++
T Consensus 12 aalkkeiaalkfei 25 (33)
T 4dzn_A 12 AALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 91
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.97 E-value=4.2e+02 Score=23.50 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 169 AKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKA 207 (608)
Q Consensus 169 gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~~ 207 (608)
+......++.++..|+.....+...+..|+..-...+++
T Consensus 33 ~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 445566777788888888888888888888777777764
No 92
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=20.25 E-value=32 Score=24.58 Aligned_cols=24 Identities=29% Similarity=0.792 Sum_probs=13.7
Q ss_pred ccccCCCCCCCCCC---CCCCCCCCch
Q 007310 112 KVNDGICDCCDGSD---EYDGKVKCPN 135 (608)
Q Consensus 112 ~VcDGicDCcDGSD---E~~~~~~C~n 135 (608)
+-|-.-|-||.|+. |.++.+||.|
T Consensus 8 rpcaaccpccpgtsck~e~ngv~ycr~ 34 (37)
T 1dl0_A 8 RPCAACCPCCPGTSCKAESNGVSYCRK 34 (37)
T ss_dssp SBCCSSCCCCTTEEEEECTTSCEEEEE
T ss_pred CccccccCCCCCcccccCcCCceeecc
Confidence 34444455555543 6667777765
No 93
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.11 E-value=6.1e+02 Score=24.84 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007310 144 ARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (608)
Q Consensus 144 ~r~~~~~~~e~~~~G~~~R~elie~gk~~r~e~~~~l~~Lk~e~~~le~~ve~le~~k~~~e~ 206 (608)
|...+.+|.......+.-=.+|..+ ...++.++..|+.+...|+.+++.++....-+++
T Consensus 99 Wk~lAE~RR~AL~eaLeEN~~Lh~~----ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~ 157 (209)
T 2wvr_A 99 WKEVAEKRRKALYEALKENEKLHKE----IEQKDNEIARLKKENKELAEVAEHVQYMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!