BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007312
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 121/546 (22%), Positives = 219/546 (40%), Gaps = 95/546 (17%)
Query: 13 DEVILEIFRHLDSKASRDACSLVCXXXXXXXXXXXXXXXIG--ASGSPDLFVKLLSRRFA 70
D+VI ++ ++ RD+ SLVC + + +PD LSRRF
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDR----LSRRFP 73
Query: 71 NVKSIHIDERLSVS----IPVQHGRRRGDQSKLSALQLHYLTK---KTGSEDGQFQSESY 123
N++S+ + + + IP G Y+T + + Q +S +
Sbjct: 74 NLRSLKLKGKPRAAMFNLIPENWG--------------GYVTPWVTEISNNLRQLKSVHF 119
Query: 124 Y---LSDSGLNALADGFSK-LEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD- 178
+SD L+ LA + LE L L CS ++ GL+S+ C +K+L ++ +
Sbjct: 120 RRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179
Query: 179 --QGLAAVGKVCNQLEDLNLRFCE--GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSL 234
+ L + + LE LN E ++ L +A C +SL S+ + + V
Sbjct: 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC-RSLVSVKVGDFEILELVGF 238
Query: 235 EAVGSHCKSL------ETLSLDSEFIH-------------NKGVHAVAQGCPL---LRVL 272
++ + E + + ++++ G + + P +R L
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298
Query: 273 KLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLS------ 326
L + E + +C +LE+L + D+GL + + CK+LK L +
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQ 356
Query: 327 ----DCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQR 382
+ +S GL A+A GC+EL ++ + +I LESIG + +NL + L+ R
Sbjct: 357 GMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDR 415
Query: 383 IGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIR-RCYKIGNNGIV 441
+ L + G +SL GC+ L++ R + + G+
Sbjct: 416 EERITDLPLDNGVRSLLI-------------------GCKKLRRFAFYLRQGGLTDLGLS 456
Query: 442 AVGEHCNSLTELSLRFCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPE 500
+G++ ++ + L + DE L+ +GC +LQ L + GC + I A P
Sbjct: 457 YIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPS 514
Query: 501 LNYLDV 506
L YL V
Sbjct: 515 LRYLWV 520
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/420 (22%), Positives = 164/420 (39%), Gaps = 89/420 (21%)
Query: 202 LTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLD-SEFIHNKG-- 258
++D L LA L++L + C T L ++ +HC+ ++TL ++ S F G
Sbjct: 124 VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183
Query: 259 VHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALY--SFQQFTDKGLHAVGKG 316
+H +AQ SLE+L Y F + + K L + +
Sbjct: 184 LHELAQ-------------------------HNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 376
C+ L ++ + D L +G A +E +N +IG F R L L
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN--EDIGMPEKYMNLVFPRKLCRLG 276
Query: 377 LLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG 436
L Y L + L L+ + + + C++ + C NL+ L R IG
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYAL----LETEDHCTLIQKCPNLEVLETRNV--IG 330
Query: 437 NNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAK 496
+ G+ + ++C L L + +R DE + +G + G++A+A+
Sbjct: 331 DRGLEVLAQYCKQLKRLRI---ERGADEQGMEDEEGL------------VSQRGLIALAQ 375
Query: 497 GCPELNYLDVSV--------------LQNLGDQAMVELGK------------------GC 524
GC EL Y+ V V L+NL D +V L + GC
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 525 PLLKDVVLSHCRQ--ITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKV 582
L+ + RQ +TD+GLS++ + + + Y G + G+ GC N++K+
Sbjct: 436 KKLRRFAF-YLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKL 493
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 125 LSDSGLNALADGFSKLEKLSLIWCSN----------ISSLGLMSLAQKCIHLKSLDLQGC 174
+ D GL LA +L++L + ++ +S GL++LAQ C L+ + +
Sbjct: 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388
Query: 175 YVGDQGLAAVGKVCNQLEDLNL-------RFCEGLTDTGLVDLAHGCGKSLKSLGIAACV 227
+ ++ L ++G L D L R + D G+ L GC K +
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448
Query: 228 KITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAV 287
+TD+ L +G + ++ + L ++G+ ++GCP L+ L+++ ++ A+ A
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508
Query: 288 GNQCLSLELLALYSFQ 303
+ SL L + ++
Sbjct: 509 VTKLPSLRYLWVQGYR 524
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 496 KGCPELNYLDVSVLQNLG---DQAMVELGKGCPLLKDVVLSHCRQ--ITDVGLSHLVK-N 549
KG P ++ + +N G + E+ LK V H R+ ++D+ L L K
Sbjct: 81 KGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSV---HFRRMIVSDLDLDRLAKAR 136
Query: 550 CRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 592
LE+ + C G T G+ ++V+ C IK +++E+ SE+
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK 179
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 122/531 (22%), Positives = 197/531 (37%), Gaps = 92/531 (17%)
Query: 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCXXXXXXXXXXXXXXXIG--ASGSPDLF 61
RI P+EV+ +F + R++ SLVC IG + SP
Sbjct: 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATV 61
Query: 62 VKLLSRRFANVKSIHIDERLSVSIP--VQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQ 119
+ RRF V+S+ + + + V G + A+ Y T E+ + +
Sbjct: 62 I----RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY----TWLEEIRLK 113
Query: 120 SESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGD- 178
++D L +A F + L L C S+ GL ++A C +LK LDL+ V D
Sbjct: 114 R--MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171
Query: 179 --QGLAAVGKVCNQLEDLNLR-FCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDV-SL 234
L+ L LN+ ++ + L L C +LKSL + V + + +L
Sbjct: 172 SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-PNLKSLKLNRAVPLEKLATL 230
Query: 235 EAVGSHCKSLETLSLDSEFIHN--KGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292
+ L T +E + G+ GC LR L + L AV + C
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCS 289
Query: 293 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEIN 352
L L L S+ L + C KL+ L + D ++ D GLE +A+ CK+L L +
Sbjct: 290 RLTTLNL-SYATVQSYDLVKLLCQCPKLQRLWVLD--YIEDAGLEVLASTCKDLRELRVF 346
Query: 353 GCH------------------NIGTMGLESIGKFCRNLTELALLYCQR------------ 382
++G LES+ FCR +T AL+ R
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406
Query: 383 -------IGNLALLEVGRG-----CKSL---------------------QALHLVDCSSI 409
L L++G G CK L + + ++ +
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466
Query: 410 GDD--AICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC 458
GD + + GC +L+KL IR C G+ ++A ++ L + C
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSC 516
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 129/315 (40%), Gaps = 36/315 (11%)
Query: 257 KGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKG 316
+ A++ L ++L+ + VTD+ L + + ++L L S + F+ GL A+
Sbjct: 95 PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT 154
Query: 317 CKKLKNLTL--SDCYFLSDMGLEAIATGCKELTHLEIN-GCHNIGTMGLESIGKFCRNLT 373
C+ LK L L SD +S L L L I+ + LE + C NL
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214
Query: 374 ELALLYCQRIGNLALL--------EVGRGCKSLQALHLVDCSSIGDDAICSIA---EGCQ 422
L L + LA L E+G G + + + D ++ GC+
Sbjct: 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYT---------AEVRPDVYSGLSVALSGCK 265
Query: 423 NLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 482
L+ L + + AV C+ LT L+L + + + + Q LQ L V
Sbjct: 266 ELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV-- 321
Query: 483 CHQIGDAGIMAIAKGCPELNYLDVSVLQN--------LGDQAMVELGKGCPLLKDVVLSH 534
I DAG+ +A C +L L V + L +Q +V + GCP L+ VL
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES-VLYF 380
Query: 535 CRQITDVGLSHLVKN 549
CRQ+T+ L + +N
Sbjct: 381 CRQMTNAALITIARN 395
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 5/176 (2%)
Query: 233 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168
Query: 293 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 350
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 351 INGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLV 404
++ + + + L L+L C I LLE+G K+LQ +V
Sbjct: 229 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 283
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGI-VAVGEHCNSLTELSL 455
+L L+L CS + A+ ++ C L +L++ C+ + VAV ++T+L+L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Query: 456 R-FCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD---VSVLQ 510
+ + L ++ + C +L HL++S + + +LNYL +S
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCY 258
Query: 511 NLGDQAMVELGKGCPLLKD-----VVLSHCRQITDVGLSHLVKNC 550
++ + ++ELG+ P LK +V Q+ L HL NC
Sbjct: 259 DIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 302
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD 505
C+ L LSL R+ D + ++ + +L LN+SGC + + + C L+ L+
Sbjct: 116 QCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174
Query: 506 VS 507
+S
Sbjct: 175 LS 176
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 165 HLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHGCGKSLKSLG 222
+L L+L GC + L + C++L++LNL +C T+ + V +AH +++ L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLN 201
Query: 223 IAACVK-ITDVSLEAVGSHCKSLETLSL-DSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280
++ K + L + C +L L L DS + N Q L + +C ++
Sbjct: 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261
Query: 281 DEALVAVGNQCLSLELLALYSFQQF 305
E L+ +G E+ L + Q F
Sbjct: 262 PETLLELG------EIPTLKTLQVF 280
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 5/176 (2%)
Query: 233 SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292
+L + S C L+ LSL+ + + V+ +A+ L+R+ C ++ AL + + C
Sbjct: 71 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 130
Query: 293 SLELLALYSFQQFTDKGLH-AVGKGCKKLKNLTLSDCY-FLSDMGLEAIATGCKELTHLE 350
L+ L L FT+K + AV + + L LS L L + C L HL+
Sbjct: 131 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 190
Query: 351 INGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLV 404
++ + + + L L+L C I LLE+G K+LQ +V
Sbjct: 191 LSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 245
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGI-VAVGEHCNSLTELSL 455
+L L+L CS + A+ ++ C L +L++ C+ + VAV ++T+L+L
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 164
Query: 456 R-FCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD---VSVLQ 510
+ + L ++ + C +L HL++S + + +LNYL +S
Sbjct: 165 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCY 220
Query: 511 NLGDQAMVELGKGCPLLKD-----VVLSHCRQITDVGLSHLVKNC 550
++ + ++ELG+ P LK +V Q+ L HL NC
Sbjct: 221 DIIPETLLELGE-IPTLKTLQVFGIVPDGTLQLLKEALPHLQINC 264
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD 505
C+ L LSL R+ D + ++ + +L LN+SGC + + + C L+ L+
Sbjct: 78 QCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 136
Query: 506 VS 507
+S
Sbjct: 137 LS 138
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 165 HLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGL-VDLAHGCGKSLKSLG 222
+L L+L GC + L + C++L++LNL +C T+ + V +AH +++ L
Sbjct: 105 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH-VSETITQLN 163
Query: 223 IAACVK-ITDVSLEAVGSHCKSLETLSL-DSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280
++ K + L + C +L L L DS + N Q L + +C ++
Sbjct: 164 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 223
Query: 281 DEALVAVGNQCLSLELLALYSFQQF 305
E L+ +G E+ L + Q F
Sbjct: 224 PETLLELG------EIPTLKTLQVF 242
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 19/242 (7%)
Query: 124 YLSDSGLNALADGF---SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
+LS+S +N GF + L L L S + ++ C LK L++ + G
Sbjct: 80 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 181 LAAVGKVCNQLE--DLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238
+ G N LE DL+ G G V L+ GCG+ LK L I+ DV +
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDGCGE-LKHLAISGNKISGDVDV---- 193
Query: 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298
S C +LE L + S + G+ + C L+ L + ++ + A+ + C L+LL
Sbjct: 194 SRCVNLEFLDVSSNNF-STGIPFLGD-CSALQHLDISGNKLSGDFSRAI-STCTELKLLN 250
Query: 299 LYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358
+ S QF K L+ L+L++ F ++ + ++ C LT L+++G H G
Sbjct: 251 ISS-NQFVGP---IPPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYG 305
Query: 359 TM 360
+
Sbjct: 306 AV 307
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 19/242 (7%)
Query: 124 YLSDSGLNALADGF---SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG 180
+LS+S +N GF + L L L S + ++ C LK L++ + G
Sbjct: 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 181 LAAVGKVCNQLE--DLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG 238
+ G N LE DL+ G G V L+ GCG+ LK L I+ DV +
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWV-LSDGCGE-LKHLAISGNKISGDVDV---- 196
Query: 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298
S C +LE L + S G+ + C L+ L + ++ + A+ + C L+LL
Sbjct: 197 SRCVNLEFLDVSSNNFS-TGIPFLGD-CSALQHLDISGNKLSGDFSRAI-STCTELKLLN 253
Query: 299 LYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIG 358
+ S QF K L+ L+L++ F ++ + ++ C LT L+++G H G
Sbjct: 254 ISS-NQFVGP---IPPLPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYG 308
Query: 359 TM 360
+
Sbjct: 309 AV 310
>pdb|3CWZ|B Chain B, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 384
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 358 GTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDA 413
G +G I + RN+ E+ CQ +G L +++G L A LV+C + ++
Sbjct: 275 GELGETQILQIPRNVLEMTF-ECQNLGKLTTVQIGHDNSGLYAKWLVECVMVRNEV 329
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 107 LTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLI-------------------- 146
L +T S+ + ++ ++ L L D F +LE LS I
Sbjct: 11 LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLE 70
Query: 147 WCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE 200
N S GL LA+KC +L L+L G + D K L+ L+L CE
Sbjct: 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 335 GLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQ 381
GLE +A C LTHL ++G +E + K NL L L C+
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL-ENLKSLDLFNCE 124
>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
Length = 113
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 429 IRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCS 474
I+ CY+ G G V V E+C L + CDR + +G G S
Sbjct: 38 IKYCYRNGFEGYVFVPEYCRDLVD-----CDRKDHYVIGVLGNGVS 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,237,405
Number of Sequences: 62578
Number of extensions: 636893
Number of successful extensions: 1325
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1250
Number of HSP's gapped (non-prelim): 47
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)