Query 007312
Match_columns 608
No_of_seqs 380 out of 3458
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 21:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2.9E-32 6.4E-37 244.8 14.7 386 6-507 70-460 (483)
2 KOG4341 F-box protein containi 100.0 9.2E-29 2E-33 222.5 10.4 321 268-589 139-464 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 2.6E-25 5.6E-30 191.2 12.7 289 9-374 99-391 (419)
4 PLN00113 leucine-rich repeat r 99.9 6.1E-24 1.3E-28 235.2 17.1 422 137-591 139-585 (968)
5 PLN00113 leucine-rich repeat r 99.9 9.5E-24 2.1E-28 233.7 17.1 399 135-564 161-584 (968)
6 KOG4194 Membrane glycoprotein 99.8 4.6E-21 1E-25 180.2 -2.5 374 139-547 79-461 (873)
7 KOG4194 Membrane glycoprotein 99.8 2.1E-20 4.5E-25 175.9 0.0 367 165-560 79-448 (873)
8 KOG2120 SCF ubiquitin ligase, 99.7 1E-16 2.2E-21 138.7 10.2 202 320-528 187-390 (419)
9 cd00116 LRR_RI Leucine-rich re 99.7 5.4E-15 1.2E-19 142.6 21.4 281 297-589 3-319 (319)
10 cd00116 LRR_RI Leucine-rich re 99.7 1E-14 2.2E-19 140.7 23.0 284 246-562 2-318 (319)
11 PLN03210 Resistant to P. syrin 99.6 1.2E-14 2.7E-19 161.3 13.3 131 395-539 777-907 (1153)
12 KOG0444 Cytoskeletal regulator 99.6 3.6E-17 7.8E-22 155.7 -5.7 370 137-565 6-376 (1255)
13 KOG0444 Cytoskeletal regulator 99.6 4.3E-17 9.3E-22 155.2 -6.0 347 135-512 29-375 (1255)
14 PLN03210 Resistant to P. syrin 99.6 1.2E-14 2.5E-19 161.5 12.1 343 187-566 556-908 (1153)
15 KOG1947 Leucine rich repeat pr 99.6 4.5E-14 9.8E-19 145.0 14.5 266 283-573 179-449 (482)
16 KOG1947 Leucine rich repeat pr 99.5 4.5E-14 9.7E-19 145.1 13.8 286 240-549 159-451 (482)
17 KOG0618 Serine/threonine phosp 99.4 2.4E-14 5.2E-19 143.1 -2.1 271 267-564 219-489 (1081)
18 KOG0618 Serine/threonine phosp 99.4 3.7E-14 8E-19 141.7 -1.7 405 130-588 38-487 (1081)
19 KOG1909 Ran GTPase-activating 99.4 1.2E-11 2.7E-16 110.3 13.4 245 310-562 22-309 (382)
20 KOG1909 Ran GTPase-activating 99.3 1.3E-10 2.7E-15 104.1 16.3 195 156-354 22-251 (382)
21 KOG3207 Beta-tubulin folding c 99.3 1.8E-12 3.8E-17 119.0 1.9 188 341-534 118-310 (505)
22 KOG0472 Leucine-rich repeat pr 99.2 1.3E-13 2.9E-18 124.7 -7.1 253 125-407 52-308 (565)
23 KOG3207 Beta-tubulin folding c 99.2 1.3E-11 2.7E-16 113.5 2.4 134 395-534 196-335 (505)
24 PF12937 F-box-like: F-box-lik 99.1 7E-11 1.5E-15 75.8 2.1 41 9-50 2-42 (47)
25 PRK15387 E3 ubiquitin-protein 98.9 3.5E-10 7.5E-15 116.9 3.0 256 242-562 201-456 (788)
26 PRK15387 E3 ubiquitin-protein 98.9 3.2E-09 6.9E-14 110.0 6.6 242 216-518 222-463 (788)
27 KOG3665 ZYG-1-like serine/thre 98.9 1.2E-08 2.5E-13 105.4 10.7 159 370-534 122-284 (699)
28 KOG0472 Leucine-rich repeat pr 98.8 3.1E-11 6.8E-16 109.6 -7.6 403 138-591 114-542 (565)
29 KOG2982 Uncharacterized conser 98.8 1.3E-08 2.9E-13 89.1 7.8 84 519-604 193-278 (418)
30 KOG3665 ZYG-1-like serine/thre 98.8 3.3E-08 7.1E-13 102.1 10.7 157 216-377 122-282 (699)
31 KOG2982 Uncharacterized conser 98.7 5.9E-09 1.3E-13 91.3 1.4 109 218-328 47-156 (418)
32 PF00646 F-box: F-box domain; 98.6 1.4E-08 3E-13 65.7 1.5 38 9-47 4-41 (48)
33 COG5238 RNA1 Ran GTPase-activa 98.6 4.1E-07 9E-12 78.9 10.7 254 317-592 29-318 (388)
34 KOG4237 Extracellular matrix p 98.6 6.6E-09 1.4E-13 94.7 -0.2 88 444-536 270-357 (498)
35 smart00256 FBOX A Receptor for 98.6 2.8E-08 6.2E-13 61.9 2.8 37 11-48 1-37 (41)
36 PF14580 LRR_9: Leucine-rich r 98.5 4.8E-08 1E-12 82.1 3.2 108 164-280 19-126 (175)
37 COG5238 RNA1 Ran GTPase-activa 98.5 3.1E-06 6.8E-11 73.6 12.9 38 158-195 24-61 (388)
38 PF14580 LRR_9: Leucine-rich r 98.3 2.9E-07 6.2E-12 77.5 2.6 58 447-509 41-98 (175)
39 PRK15370 E3 ubiquitin-protein 98.3 1.6E-06 3.5E-11 90.8 6.8 95 292-406 199-293 (754)
40 KOG4237 Extracellular matrix p 98.2 1.6E-07 3.5E-12 85.9 -0.5 91 392-487 270-360 (498)
41 KOG3864 Uncharacterized conser 98.2 1.8E-06 3.9E-11 71.9 5.5 90 474-566 102-191 (221)
42 KOG1259 Nischarin, modulator o 98.2 2.6E-07 5.7E-12 81.3 -0.6 13 343-355 213-225 (490)
43 PRK15370 E3 ubiquitin-protein 98.2 9.1E-06 2E-10 85.3 10.3 18 11-28 25-43 (754)
44 KOG3864 Uncharacterized conser 98.2 2.5E-06 5.4E-11 71.0 4.7 90 449-540 102-191 (221)
45 KOG1259 Nischarin, modulator o 98.0 6.6E-07 1.4E-11 78.8 -0.9 55 242-301 284-338 (490)
46 KOG4658 Apoptotic ATPase [Sign 98.0 4.8E-06 1E-10 88.8 3.8 15 342-356 715-729 (889)
47 KOG4658 Apoptotic ATPase [Sign 97.8 1.4E-05 3E-10 85.4 2.8 15 498-512 769-783 (889)
48 KOG1859 Leucine-rich repeat pr 97.5 1.6E-05 3.4E-10 79.1 -0.8 204 310-536 76-290 (1096)
49 KOG0617 Ras suppressor protein 97.4 1E-06 2.2E-11 70.9 -8.6 38 550-590 149-186 (264)
50 KOG0617 Ras suppressor protein 97.3 2.2E-06 4.9E-11 69.0 -7.3 86 239-329 99-184 (264)
51 KOG1859 Leucine-rich repeat pr 97.0 8.6E-05 1.9E-09 74.1 -2.0 209 362-593 76-295 (1096)
52 PF13855 LRR_8: Leucine rich r 96.9 0.00013 2.9E-09 49.8 -0.9 59 217-278 2-60 (61)
53 PF13855 LRR_8: Leucine rich r 96.8 0.00022 4.8E-09 48.7 -0.5 33 449-482 2-34 (61)
54 KOG2123 Uncharacterized conser 96.7 0.00048 1E-08 60.7 0.2 102 422-531 19-123 (388)
55 smart00367 LRR_CC Leucine-rich 96.6 0.0021 4.6E-08 34.7 2.6 22 525-546 2-23 (26)
56 PRK15386 type III secretion pr 96.5 0.002 4.2E-08 61.8 3.3 139 393-561 49-187 (426)
57 KOG2739 Leucine-rich acidic nu 96.4 0.00043 9.2E-09 60.7 -1.7 41 216-256 65-105 (260)
58 KOG2123 Uncharacterized conser 96.4 0.0016 3.5E-08 57.5 1.7 101 474-583 20-123 (388)
59 smart00367 LRR_CC Leucine-rich 96.4 0.0046 9.9E-08 33.4 2.9 24 498-521 1-24 (26)
60 PLN03150 hypothetical protein; 96.4 0.0048 1E-07 64.7 5.4 61 446-509 440-500 (623)
61 KOG0281 Beta-TrCP (transducin 96.2 0.0015 3.1E-08 59.0 0.3 47 2-50 70-120 (499)
62 PRK15386 type III secretion pr 96.1 0.0028 6E-08 60.8 1.9 166 367-567 49-216 (426)
63 KOG2739 Leucine-rich acidic nu 96.1 0.0036 7.9E-08 55.1 2.4 36 163-199 64-101 (260)
64 KOG4308 LRR-containing protein 96.1 0.0017 3.6E-08 64.8 0.3 193 372-572 89-310 (478)
65 KOG1644 U2-associated snRNP A' 95.9 0.0032 7E-08 52.9 1.1 33 164-199 42-74 (233)
66 PLN03150 hypothetical protein; 95.9 0.02 4.3E-07 60.2 7.0 82 244-329 420-501 (623)
67 KOG2997 F-box protein FBX9 [Ge 95.8 0.0056 1.2E-07 55.0 2.2 43 6-49 104-152 (366)
68 KOG4308 LRR-containing protein 95.5 0.0099 2.1E-07 59.4 3.1 59 140-199 89-154 (478)
69 PF12799 LRR_4: Leucine Rich r 95.5 0.014 3E-07 36.3 2.7 36 552-590 2-37 (44)
70 PF12799 LRR_4: Leucine Rich r 95.5 0.019 4E-07 35.8 3.1 15 240-254 22-36 (44)
71 PLN03215 ascorbic acid mannose 95.2 0.015 3.3E-07 55.2 2.9 36 9-44 5-40 (373)
72 COG4886 Leucine-rich repeat (L 94.5 0.028 6E-07 56.0 3.2 171 163-354 115-287 (394)
73 PF13516 LRR_6: Leucine Rich r 94.1 0.048 1E-06 28.6 2.0 23 163-185 1-23 (24)
74 PF13013 F-box-like_2: F-box-l 94.0 0.046 9.9E-07 41.7 2.5 33 9-42 23-57 (109)
75 KOG1644 U2-associated snRNP A' 93.9 0.048 1E-06 46.2 2.7 110 474-591 43-154 (233)
76 KOG4579 Leucine-rich repeat (L 93.5 0.026 5.7E-07 44.4 0.5 112 139-260 28-141 (177)
77 KOG0531 Protein phosphatase 1, 93.4 0.0083 1.8E-07 59.8 -3.1 179 393-594 92-272 (414)
78 PF13516 LRR_6: Leucine Rich r 93.2 0.11 2.4E-06 27.2 2.5 21 525-546 2-22 (24)
79 COG4886 Leucine-rich repeat (L 92.9 0.12 2.5E-06 51.5 4.3 147 139-302 141-287 (394)
80 KOG4579 Leucine-rich repeat (L 92.7 0.041 8.9E-07 43.4 0.5 135 448-593 27-162 (177)
81 smart00368 LRR_RI Leucine rich 91.8 0.26 5.7E-06 27.0 3.0 24 164-187 2-25 (28)
82 KOG0274 Cdc4 and related F-box 88.9 0.15 3.3E-06 51.9 0.6 45 3-49 104-148 (537)
83 KOG0531 Protein phosphatase 1, 88.2 0.16 3.5E-06 50.7 0.3 36 162-199 93-128 (414)
84 smart00368 LRR_RI Leucine rich 87.4 0.8 1.7E-05 25.1 2.6 9 501-509 4-12 (28)
85 KOG3763 mRNA export factor TAP 84.9 2.2 4.7E-05 42.6 5.9 86 420-505 216-307 (585)
86 PF13504 LRR_7: Leucine rich r 84.7 0.72 1.6E-05 21.7 1.4 14 577-590 1-14 (17)
87 KOG3763 mRNA export factor TAP 81.8 2.5 5.4E-05 42.1 5.0 16 237-252 239-254 (585)
88 KOG0532 Leucine-rich repeat (L 78.7 0.38 8.3E-06 47.8 -1.5 37 160-199 117-153 (722)
89 PF09372 PRANC: PRANC domain; 71.9 2.8 6.1E-05 31.6 1.9 26 6-32 70-95 (97)
90 PF00560 LRR_1: Leucine Rich R 65.2 4.5 9.9E-05 20.5 1.3 13 578-590 1-13 (22)
91 KOG0532 Leucine-rich repeat (L 65.1 1.1 2.4E-05 44.7 -1.8 14 497-510 232-245 (722)
92 PF03382 DUF285: Mycoplasma pr 65.0 4 8.7E-05 32.3 1.6 14 519-533 55-68 (120)
93 PF07723 LRR_2: Leucine Rich R 61.2 6 0.00013 21.2 1.3 8 527-534 2-9 (26)
94 KOG3926 F-box proteins [Amino 60.0 8.1 0.00017 34.6 2.6 38 9-46 203-240 (332)
95 smart00369 LRR_TYP Leucine-ric 56.1 11 0.00023 20.0 1.8 15 163-177 1-15 (26)
96 smart00370 LRR Leucine-rich re 56.1 11 0.00023 20.0 1.8 15 163-177 1-15 (26)
97 PF13306 LRR_5: Leucine rich r 53.5 1.8 3.8E-05 34.8 -2.4 10 524-533 80-89 (129)
98 PF03382 DUF285: Mycoplasma pr 53.3 6.5 0.00014 31.1 0.9 9 571-579 80-88 (120)
99 KOG3735 Tropomodulin and leiom 43.3 46 0.00099 31.4 4.8 91 487-578 186-281 (353)
100 smart00365 LRR_SD22 Leucine-ri 40.6 27 0.00058 18.8 1.8 14 164-177 2-15 (26)
101 KOG3735 Tropomodulin and leiom 34.7 91 0.002 29.5 5.3 84 180-263 189-276 (353)
102 smart00364 LRR_BAC Leucine-ric 29.3 28 0.00061 18.7 0.7 15 577-591 2-16 (26)
103 KOG4408 Putative Mg2+ and Co2+ 21.6 27 0.0006 32.6 -0.3 42 8-50 8-49 (386)
104 KOG2502 Tub family proteins [G 21.1 64 0.0014 30.5 1.9 36 8-43 45-87 (355)
105 PF07735 FBA_2: F-box associat 20.6 2.9E+02 0.0063 18.9 5.7 8 500-507 12-19 (70)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.98 E-value=2.9e-32 Score=244.85 Aligned_cols=386 Identities=28% Similarity=0.496 Sum_probs=224.3
Q ss_pred CcccCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccceeeccCCCchHHHHHHHhhcCCceEEEecccccccc
Q 007312 6 RINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSVSI 85 (608)
Q Consensus 6 ~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~ 85 (608)
.++-.||+|++..||+||+ ++.+.+++.+|+.|+..+-.-.-|-+++.. ....+
T Consensus 70 ~~~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~-----------------------t~~rD-- 123 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLF-----------------------TFQRD-- 123 (483)
T ss_pred cccccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehh-----------------------cchhc--
Confidence 3444699999999999999 999999999999999986443333333221 11100
Q ss_pred ccccCccccccccchhhhhhhhcccCCCCcccccccccccCcccHHHHHhcC-CCCceeeccccCCCChhhHHHHHHhCC
Q 007312 86 PVQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGF-SKLEKLSLIWCSNISSLGLMSLAQKCI 164 (608)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~ 164 (608)
+...+...+.+.+ ..|++|++++|..+....+.....++|
T Consensus 124 ---------------------------------------v~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~Cp 164 (483)
T KOG4341|consen 124 ---------------------------------------VDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCP 164 (483)
T ss_pred ---------------------------------------CCCcceehHhhhhccccccccccccccCCcchhhHHhhhCC
Confidence 0111111222222 378888888888777777777777888
Q ss_pred CccEEEccCCc-cChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCC
Q 007312 165 HLKSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (608)
Q Consensus 165 ~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 243 (608)
++++|.+.++. +++..+..+++.|++|+.|++..|..+++..+..+..++ ++|++|++++|+.+...++..+.+.+..
T Consensus 165 nIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC-~kL~~lNlSwc~qi~~~gv~~~~rG~~~ 243 (483)
T KOG4341|consen 165 NIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC-RKLKYLNLSWCPQISGNGVQALQRGCKE 243 (483)
T ss_pred chhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh-hhHHHhhhccCchhhcCcchHHhccchh
Confidence 88888887774 777777777777888888888777677776666666666 6777777777655554444444443333
Q ss_pred CCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeE
Q 007312 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (608)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 323 (608)
++.+.+.+ +.....+.+......++-+.++++..|+.+++.++..+..++..|+.|
T Consensus 244 l~~~~~kG------------------------C~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 244 LEKLSLKG------------------------CLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred hhhhhhcc------------------------cccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 33332221 222333444444444445555555555555555555555555555555
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEe
Q 007312 324 TLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHL 403 (608)
Q Consensus 324 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 403 (608)
..+++..+++..+..+.+++++|+.|.+.+|..+++.++..+...|+.|+.+++..|..+.+..
T Consensus 300 ~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t---------------- 363 (483)
T KOG4341|consen 300 CYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT---------------- 363 (483)
T ss_pred cccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh----------------
Confidence 5555554555555555555555555555555544444455555444455544444443333333
Q ss_pred ccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHh---cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEe
Q 007312 404 VDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGE---HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNV 480 (608)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 480 (608)
+..+..+|+.|+.+.++.|..+++.++..+.. ....|+.+.+++|+.+++...+.+...++|+.+++
T Consensus 364 ----------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 364 ----------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred ----------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 33334444444444444444444443333221 23456666666666666666666666666666666
Q ss_pred cCCcccCHHHHHHHHhhCCCCcEEeec
Q 007312 481 SGCHQIGDAGIMAIAKGCPELNYLDVS 507 (608)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~L~~L~l~ 507 (608)
.+|..++.+++..+..++|+++...+-
T Consensus 434 ~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 434 IDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred echhhhhhhhhHHHHhhCccceehhhc
Confidence 666666666666666666666655443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=9.2e-29 Score=222.49 Aligned_cols=321 Identities=29% Similarity=0.552 Sum_probs=274.0
Q ss_pred ccceeeecc-cCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCC
Q 007312 268 LLRVLKLQC-INVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 346 (608)
Q Consensus 268 ~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 346 (608)
.|+.|.+++ -.+.+..+..+...||++++|.+.+|.++++.....+...|++|++|.+..|..+++..+..+...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566666653 3456667777777889999999988888888888888888999999999998888888888888899999
Q ss_pred cEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcE
Q 007312 347 THLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKK 426 (608)
Q Consensus 347 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 426 (608)
++|++++|..+...+++.+.+.|..++++.+.+|.+.....+......++-+.++++.+|..++++++-.+..++..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 99999999888888888888888888888888888888888888877788888888889888999888888888889999
Q ss_pred EecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCC-CccEEEecCCcccCHHHHHHHHhhCCCCcEEe
Q 007312 427 LHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD 505 (608)
Q Consensus 427 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 505 (608)
|+.++|..+++..+..+..++++|+.|.++.|.++++.++..++..+ .|+.+++.+|..+++..+..+..+|+.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 99999988999999999999999999999999989998888888765 59999999988888777888888899999999
Q ss_pred ecCCCCCChHHHHHHhc---cCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEE
Q 007312 506 VSVLQNLGDQAMVELGK---GCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKV 582 (608)
Q Consensus 506 l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l 582 (608)
++.|..++|.++..+.. ++..|+.+.+.+|+.+++..++++. .|++||.+++.+|..++..++..+...+|+++..
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 99998899988777643 5678999999999988888887775 7899999999999999999999999899998887
Q ss_pred Eecceee
Q 007312 583 MVEKWKV 589 (608)
Q Consensus 583 ~l~~~~~ 589 (608)
....-.-
T Consensus 458 a~~a~~t 464 (483)
T KOG4341|consen 458 AYFAPVT 464 (483)
T ss_pred hhccCCC
Confidence 6654433
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-25 Score=191.21 Aligned_cols=289 Identities=24% Similarity=0.348 Sum_probs=188.5
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccceeeccCCC--chHHHHHHHhhcCCceEEEeccccccccc
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGS--PDLFVKLLSRRFANVKSIHIDERLSVSIP 86 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~l~~~~~~~~~~~ 86 (608)
+.|||||+..||+.|+ .+++++++.|||||+++....+.|.+.+..+. .+.....+.+| .+..+++....
T Consensus 99 ~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~~----- 170 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARSF----- 170 (419)
T ss_pred ccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcchhh-----
Confidence 3599999999999999 99999999999999999999999999888765 33344444433 22222222111
Q ss_pred cccCccccccccchhhhhhhhcccCCCCcccccccccccCcccHHHHHh-cCCCCceeeccccCCCChhhHHHHHHhCCC
Q 007312 87 VQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALAD-GFSKLEKLSLIWCSNISSLGLMSLAQKCIH 165 (608)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 165 (608)
..+..+..... .-.+|+.|+++.. .+....+..++..|.+
T Consensus 171 --------------------------------------~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 171 --------------------------------------MDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSK 211 (419)
T ss_pred --------------------------------------hcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHh
Confidence 11221211111 1136888888753 6667777778888888
Q ss_pred ccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHH-hcCCCC
Q 007312 166 LKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVG-SHCKSL 244 (608)
Q Consensus 166 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L 244 (608)
|+.|.|.|..+.+.....+++ ..+|+.|+++.|.+++..++.-+...+ ..|.+|++++|...++. +..+. .--++|
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~sc-s~L~~LNlsWc~l~~~~-Vtv~V~hise~l 288 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSC-SRLDELNLSWCFLFTEK-VTVAVAHISETL 288 (419)
T ss_pred hhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhh-hhHhhcCchHhhccchh-hhHHHhhhchhh
Confidence 888888888888888888887 467777777777777666666555555 66666666666322222 22211 112344
Q ss_pred CEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEe
Q 007312 245 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 324 (608)
Q Consensus 245 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 324 (608)
+.|+++++. -.+....+..+...||+|.+|+++++..+++..+..+.+ ++.|++|.
T Consensus 289 ~~LNlsG~r-----------------------rnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lS 344 (419)
T KOG2120|consen 289 TQLNLSGYR-----------------------RNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLS 344 (419)
T ss_pred hhhhhhhhH-----------------------hhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeee
Confidence 444444321 013334566677778888888888877777755555554 78888888
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccce
Q 007312 325 LSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (608)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (608)
++.|+.+..+.+-.+ ...|.|.+|++.+| +++..++.+.+.||+|+.
T Consensus 345 lsRCY~i~p~~~~~l-~s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 345 LSRCYDIIPETLLEL-NSKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred hhhhcCCChHHeeee-ccCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 888887666555444 35688888888875 344456666666777653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=6.1e-24 Score=235.22 Aligned_cols=422 Identities=18% Similarity=0.073 Sum_probs=203.2
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCC--chHHHHHHhhc
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAHGC 214 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 214 (608)
+++|++|+++++. +.. .++..+..+++|++|++++|.+.......+.. +++|++|+++++.... ...+. .
T Consensus 139 l~~L~~L~Ls~n~-~~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~-----~ 210 (968)
T PLN00113 139 IPNLETLDLSNNM-LSG-EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELG-----Q 210 (968)
T ss_pred cCCCCEEECcCCc-ccc-cCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHc-----C
Confidence 4556666665442 211 12333445666666666666554333333433 5666666666543211 11111 1
Q ss_pred CCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCC
Q 007312 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (608)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 294 (608)
.++|+.|+++++ .+....... ...+++|++|++++|.+...... .+..+++|+.|+++.+.+.......+. .+++|
T Consensus 211 l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L 286 (968)
T PLN00113 211 MKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKL 286 (968)
T ss_pred cCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeeccCchhHh-hccCc
Confidence 155666666655 222111111 23456666666665554432222 223455666666655544332222222 24556
Q ss_pred cEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccce
Q 007312 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (608)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (608)
++|+++++. +..... .....+++|+.|++.++.. ... .......+++|+.|++.++.. .......+ ..+++|+.
T Consensus 287 ~~L~Ls~n~-l~~~~p-~~~~~l~~L~~L~l~~n~~-~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~~~~L~~ 360 (968)
T PLN00113 287 ISLDLSDNS-LSGEIP-ELVIQLQNLEILHLFSNNF-TGK-IPVALTSLPRLQVLQLWSNKF-SGEIPKNL-GKHNNLTV 360 (968)
T ss_pred CEEECcCCe-eccCCC-hhHcCCCCCcEEECCCCcc-CCc-CChhHhcCCCCCEEECcCCCC-cCcCChHH-hCCCCCcE
Confidence 666655422 221111 1122355555555555442 111 111123345555555555321 11111111 22345555
Q ss_pred Eecccc-----------------------cccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEeccc
Q 007312 375 LALLYC-----------------------QRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRR 431 (608)
Q Consensus 375 L~l~~~-----------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 431 (608)
|+++++ +.+.... ......+++|+.|++++|. ++.. ....+..+++|+.|++++
T Consensus 361 L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~-p~~~~~~~~L~~L~L~~n~-l~~~-~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI-PKSLGACRSLRRVRLQDNS-FSGE-LPSEFTKLPLVYFLDISN 437 (968)
T ss_pred EECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC-CHHHhCCCCCCEEECcCCE-eeeE-CChhHhcCCCCCEEECcC
Confidence 555442 1111111 1112345555555555542 2211 122233455666666655
Q ss_pred ccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCC
Q 007312 432 CYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQN 511 (608)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 511 (608)
+. +... .......+++|+.|++++|...+ .. .......+|+.|++++|. ++..... .+.++++|+.|++++| .
T Consensus 438 N~-l~~~-~~~~~~~l~~L~~L~L~~n~~~~-~~-p~~~~~~~L~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N-~ 510 (968)
T PLN00113 438 NN-LQGR-INSRKWDMPSLQMLSLARNKFFG-GL-PDSFGSKRLENLDLSRNQ-FSGAVPR-KLGSLSELMQLKLSEN-K 510 (968)
T ss_pred Cc-ccCc-cChhhccCCCCcEEECcCceeee-ec-CcccccccceEEECcCCc-cCCccCh-hhhhhhccCEEECcCC-c
Confidence 42 2211 11112245667777777654221 11 112233567788887753 4332222 2335788888888888 3
Q ss_pred CChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 512 LGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 512 l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
+.......+ ..+++|+.|++++|. ++......+ ..+++|+.|++++|+.... ++..+..+++|+.+++++|+++.
T Consensus 511 l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 511 LSGEIPDEL-SSCKKLVSLDLSHNQ-LSGQIPASF-SEMPVLSQLDLSQNQLSGE--IPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ceeeCChHH-cCccCCCEEECCCCc-ccccCChhH-hCcccCCEEECCCCccccc--CChhHhcCcccCEEeccCCccee
Confidence 443322333 357889999999865 655444444 4688999999998765432 33445678899999999998874
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=9.5e-24 Score=233.67 Aligned_cols=399 Identities=19% Similarity=0.124 Sum_probs=235.9
Q ss_pred hcCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCC--CchHHHHHHh
Q 007312 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL--TDTGLVDLAH 212 (608)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~ 212 (608)
..+++|+.|++.++. +.. .++..+.++++|++|++++|.+....+..+.. +++|+.|+++++... ....+.
T Consensus 161 ~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~---- 233 (968)
T PLN00113 161 GSFSSLKVLDLGGNV-LVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIG---- 233 (968)
T ss_pred hcCCCCCEEECccCc-ccc-cCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHh----
Confidence 357788999888753 221 23344567888888888888766544555544 778888888766321 111121
Q ss_pred hcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCC
Q 007312 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292 (608)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 292 (608)
..++|++|++++| .+.... +.....+++|++|++++|.+.......+ ..+++|+.|+++.+.+.......+ ..++
T Consensus 234 -~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~ 308 (968)
T PLN00113 234 -GLTSLNHLDLVYN-NLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELV-IQLQ 308 (968)
T ss_pred -cCCCCCEEECcCc-eecccc-ChhHhCCCCCCEEECcCCeeeccCchhH-hhccCcCEEECcCCeeccCCChhH-cCCC
Confidence 2267788887776 333221 2223456777777777766554322222 245667777776665544322222 2356
Q ss_pred CCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCC-----------------
Q 007312 293 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCH----------------- 355 (608)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------- 355 (608)
+|+.|++.++ .+.......+ ..+++|+.|++.++.. .. .+......+++|+.|+++++.
T Consensus 309 ~L~~L~l~~n-~~~~~~~~~~-~~l~~L~~L~L~~n~l-~~-~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 309 NLEILHLFSN-NFTGKIPVAL-TSLPRLQVLQLWSNKF-SG-EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred CCcEEECCCC-ccCCcCChhH-hcCCCCCEEECcCCCC-cC-cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 6666666542 2222111222 2355666666655542 11 111112234455555554422
Q ss_pred ------CCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEec
Q 007312 356 ------NIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHI 429 (608)
Q Consensus 356 ------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 429 (608)
.+... +......+++|+.|+++++ .+.... ......+++|+.|+++++. +... .......+++|+.|++
T Consensus 385 L~l~~n~l~~~-~p~~~~~~~~L~~L~L~~n-~l~~~~-p~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 385 LILFSNSLEGE-IPKSLGACRSLRRVRLQDN-SFSGEL-PSEFTKLPLVYFLDISNNN-LQGR-INSRKWDMPSLQMLSL 459 (968)
T ss_pred EECcCCEeccc-CCHHHhCCCCCCEEECcCC-EeeeEC-ChhHhcCCCCCEEECcCCc-ccCc-cChhhccCCCCcEEEC
Confidence 11111 1122235789999999884 343322 2223578999999999864 3321 2233346899999999
Q ss_pred ccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCC
Q 007312 430 RRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 509 (608)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (608)
++|...+. +... ...++|+.|++++|. +.......+..+++|+.|++++|. +....... +.++++|+.|++++|
T Consensus 460 ~~n~~~~~--~p~~-~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~l~~L~~L~Ls~N 533 (968)
T PLN00113 460 ARNKFFGG--LPDS-FGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENK-LSGEIPDE-LSSCKKLVSLDLSHN 533 (968)
T ss_pred cCceeeee--cCcc-cccccceEEECcCCc-cCCccChhhhhhhccCEEECcCCc-ceeeCChH-HcCccCCCEEECCCC
Confidence 98843221 1111 134789999999965 555556667778899999999964 44322223 346899999999999
Q ss_pred CCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 510 QNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 510 ~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
.++......+ ..+++|+.|++++|. ++......+ ..+++|+.|++++|+..
T Consensus 534 -~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~l-~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 534 -QLSGQIPASF-SEMPVLSQLDLSQNQ-LSGEIPKNL-GNVESLVQVNISHNHLH 584 (968)
T ss_pred -cccccCChhH-hCcccCCEEECCCCc-ccccCChhH-hcCcccCEEeccCCcce
Confidence 4554433333 358999999999975 654444444 46899999999998754
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=4.6e-21 Score=180.23 Aligned_cols=374 Identities=21% Similarity=0.207 Sum_probs=190.2
Q ss_pred CCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCC--CCCchHHHHHHhhcCC
Q 007312 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCE--GLTDTGLVDLAHGCGK 216 (608)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~ 216 (608)
.-+.|+++++ .+...++. .+.++++|+++++..|.++ .+..+.....+|+.|+|.++. .++...+..+ +
T Consensus 79 ~t~~LdlsnN-kl~~id~~-~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l-----~ 149 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFE-FFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL-----P 149 (873)
T ss_pred ceeeeecccc-ccccCcHH-HHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhH-----h
Confidence 5566777654 33333322 2346777777777777653 333333434567777777642 2222333322 6
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcE
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 296 (608)
.|++|+++.+ .+.......+ ..-+++++|++++|.++......|. .+.+|-.|.++.|.++.-....+ ..+++|+.
T Consensus 150 alrslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~F-k~L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSF-KRLPKLES 225 (873)
T ss_pred hhhhhhhhhc-hhhcccCCCC-CCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHh-hhcchhhh
Confidence 7777777775 3332222222 2235677777777777666555554 45577777777766665444333 23667777
Q ss_pred EEeccccCCChHHHHHHhhcCCCCCeEecCCCCC--CCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccce
Q 007312 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF--LSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (608)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (608)
|++.. +.+....... ++++++|+.|.+..+.. +.+.. +-.+.++++|+++.+ .+....-..+ -.+..|+.
T Consensus 226 LdLnr-N~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N-~l~~vn~g~l-fgLt~L~~ 297 (873)
T KOG4194|consen 226 LDLNR-NRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETN-RLQAVNEGWL-FGLTSLEQ 297 (873)
T ss_pred hhccc-cceeeehhhh-hcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccc-hhhhhhcccc-cccchhhh
Confidence 77764 3332222222 23466777666665441 22211 123456777776652 2221111111 13466777
Q ss_pred EecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEe
Q 007312 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (608)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (608)
|++++ +.+.......+ .-+++|+.|+++.+ .++.-.-.. +..+..|+.|+++.+ .+... ....+..+++|+.|+
T Consensus 298 L~lS~-NaI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~s-f~~L~~Le~LnLs~N-si~~l-~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 298 LDLSY-NAIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGS-FRVLSQLEELNLSHN-SIDHL-AEGAFVGLSSLHKLD 371 (873)
T ss_pred hccch-hhhheeecchh-hhcccceeEecccc-ccccCChhH-HHHHHHhhhhccccc-chHHH-HhhHHHHhhhhhhhc
Confidence 77766 44443333333 23577777777764 233211111 122556777777665 22211 111223456777777
Q ss_pred cccCCc---CChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCC--CCChHHHHHHhccCCCcce
Q 007312 455 LRFCDR---VGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQ--NLGDQAMVELGKGCPLLKD 529 (608)
Q Consensus 455 l~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~L~~ 529 (608)
+..+.- ++| ....+..+++|++|++.++ ++....-.++ ..+++|+.|+|.+|. .|...++.. + +|++
T Consensus 372 Lr~N~ls~~IED-aa~~f~gl~~LrkL~l~gN-qlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAFe~----m-~Lk~ 443 (873)
T KOG4194|consen 372 LRSNELSWCIED-AAVAFNGLPSLRKLRLTGN-QLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAFEP----M-ELKE 443 (873)
T ss_pred CcCCeEEEEEec-chhhhccchhhhheeecCc-eeeecchhhh-ccCcccceecCCCCcceeeccccccc----c-hhhh
Confidence 766421 222 4445555667777777763 4443333333 346777777777664 122222222 2 6666
Q ss_pred eecccccCccHHHHHHHH
Q 007312 530 VVLSHCRQITDVGLSHLV 547 (608)
Q Consensus 530 L~l~~c~~l~~~~~~~~~ 547 (608)
|.+...+.+-+..++-+.
T Consensus 444 Lv~nSssflCDCql~Wl~ 461 (873)
T KOG4194|consen 444 LVMNSSSFLCDCQLKWLA 461 (873)
T ss_pred hhhcccceEEeccHHHHH
Confidence 666654444444444444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=2.1e-20 Score=175.86 Aligned_cols=367 Identities=19% Similarity=0.133 Sum_probs=201.8
Q ss_pred CccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCC
Q 007312 165 HLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 244 (608)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 244 (608)
.-+.|++++|.+.+..+..+.. +|+|+++++..+.--. +.. +.+...+|+.|++..+ .++...-+.+ +..|.|
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~n-l~nLq~v~l~~N~Lt~---IP~-f~~~sghl~~L~L~~N-~I~sv~se~L-~~l~al 151 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYN-LPNLQEVNLNKNELTR---IPR-FGHESGHLEKLDLRHN-LISSVTSEEL-SALPAL 151 (873)
T ss_pred ceeeeeccccccccCcHHHHhc-CCcceeeeeccchhhh---ccc-ccccccceeEEeeecc-ccccccHHHH-HhHhhh
Confidence 4567788887777666666655 7778887777542111 111 1111156777777776 3433333333 345777
Q ss_pred CEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEe
Q 007312 245 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 324 (608)
Q Consensus 245 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 324 (608)
+.|+++.|.++......+. .-+++++|++.+|.++......+.. +.+|..|.++. +.++......+. .+++|+.|+
T Consensus 152 rslDLSrN~is~i~~~sfp-~~~ni~~L~La~N~It~l~~~~F~~-lnsL~tlkLsr-NrittLp~r~Fk-~L~~L~~Ld 227 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFP-AKVNIKKLNLASNRITTLETGHFDS-LNSLLTLKLSR-NRITTLPQRSFK-RLPKLESLD 227 (873)
T ss_pred hhhhhhhchhhcccCCCCC-CCCCceEEeeccccccccccccccc-cchheeeeccc-CcccccCHHHhh-hcchhhhhh
Confidence 8888877766654444333 2356788888777776654444433 44777777765 444443333333 377777777
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEec
Q 007312 325 LSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLV 404 (608)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (608)
+..+.. .... ..-++++++|+.|.+..+ .+.... ...+..+.++++|+|.. +++....- ..+.+++.|+.|+++
T Consensus 228 LnrN~i-rive-~ltFqgL~Sl~nlklqrN-~I~kL~-DG~Fy~l~kme~l~L~~-N~l~~vn~-g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 228 LNRNRI-RIVE-GLTFQGLPSLQNLKLQRN-DISKLD-DGAFYGLEKMEHLNLET-NRLQAVNE-GWLFGLTSLEQLDLS 301 (873)
T ss_pred ccccce-eeeh-hhhhcCchhhhhhhhhhc-Cccccc-Ccceeeecccceeeccc-chhhhhhc-ccccccchhhhhccc
Confidence 776542 1110 111345677777777653 222110 01122356777777776 54544332 223467777777777
Q ss_pred cCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCc
Q 007312 405 DCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCH 484 (608)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 484 (608)
.+ .+.......+ +.+++|+.|+++++ .++...-..+ ..+..|++|.++.+ .+....-..+..+.+|++|+++.+
T Consensus 302 ~N-aI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N- 375 (873)
T KOG4194|consen 302 YN-AIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSN- 375 (873)
T ss_pred hh-hhheeecchh-hhcccceeEecccc-ccccCChhHH-HHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCC-
Confidence 64 2332222222 33677888888765 3332211111 22467777777774 355444455555667777777764
Q ss_pred ccC---HHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeeccc
Q 007312 485 QIG---DAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVY 560 (608)
Q Consensus 485 ~~~---~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 560 (608)
.++ +++. ..+..+++|+.|.+.+| ++....-++ +.++++|++|+|.++. |.+....+|- .+ .|++|.+..
T Consensus 376 ~ls~~IEDaa-~~f~gl~~LrkL~l~gN-qlk~I~krA-fsgl~~LE~LdL~~Na-iaSIq~nAFe-~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 376 ELSWCIEDAA-VAFNGLPSLRKLRLTGN-QLKSIPKRA-FSGLEALEHLDLGDNA-IASIQPNAFE-PM-ELKELVMNS 448 (873)
T ss_pred eEEEEEecch-hhhccchhhhheeecCc-eeeecchhh-hccCcccceecCCCCc-ceeecccccc-cc-hhhhhhhcc
Confidence 332 1222 23334777888888777 344333233 2357788888887743 6555555553 23 666666543
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1e-16 Score=138.68 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=97.3
Q ss_pred CCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCc
Q 007312 320 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQ 399 (608)
Q Consensus 320 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 399 (608)
|+++++++.. ++...+..+...|.+|+.|.+.+ ..+.+.....++++ .+|+.|+++.|++++..++..++.+|+.|.
T Consensus 187 lq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 187 LQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hHHhhcchhh-eeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4444444333 33334444444444444444444 22333333333333 444444444444444444444444444444
Q ss_pred EEEeccCCCCChHHHHHHH-hcCccCcEEeccccc-ccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccE
Q 007312 400 ALHLVDCSSIGDDAICSIA-EGCQNLKKLHIRRCY-KIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQH 477 (608)
Q Consensus 400 ~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 477 (608)
.|+++.|...++. +.... .--++|+.|+++++. ++....+..+.+.||+|.+|++++|..+++..+..+.+++-|++
T Consensus 264 ~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 4444444322222 22111 113455555555543 23333455555566666666666666666655666666666666
Q ss_pred EEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcc
Q 007312 478 LNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLK 528 (608)
Q Consensus 478 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 528 (608)
|.++.|..+....+..+. ..|.|.+|++.+| ++|..++-+.+.+|+|+
T Consensus 343 lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~--vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELN-SKPSLVYLDVFGC--VSDTTMELLKEMLSHLK 390 (419)
T ss_pred eehhhhcCCChHHeeeec-cCcceEEEEeccc--cCchHHHHHHHhCcccc
Confidence 666666555544333332 2566666666665 45555554444455544
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=5.4e-15 Score=142.63 Aligned_cols=281 Identities=21% Similarity=0.205 Sum_probs=177.8
Q ss_pred EEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHH---HHHHhcCCCCcEEEecCCCCCC--hhHHHH---HHhc
Q 007312 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGL---EAIATGCKELTHLEINGCHNIG--TMGLES---IGKF 368 (608)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~~~~---l~~~ 368 (608)
|++.+ ..+....+..+...+++|+.+.+.++. +++.+. .......++++++.+.++. +. ...+.. ....
T Consensus 3 l~L~~-~~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 3 LSLKG-ELLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccc-CcccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHh
Confidence 44433 444445555665567889999999887 544443 3334456779999998754 33 233332 2233
Q ss_pred CcccceEecccccccChH---HHHHHHhcCCCCcEEEeccCCCCChHHHHHH---HhcC-ccCcEEecccccccChHHH-
Q 007312 369 CRNLTELALLYCQRIGNL---ALLEVGRGCKSLQALHLVDCSSIGDDAICSI---AEGC-QNLKKLHIRRCYKIGNNGI- 440 (608)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~- 440 (608)
+++|+.|+++++. +... .+..+... ++|++|++++|. +++.+...+ ...+ ++|+.|++++|. +...+.
T Consensus 80 ~~~L~~L~l~~~~-~~~~~~~~~~~l~~~-~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~ 155 (319)
T cd00116 80 GCGLQELDLSDNA-LGPDGCGVLESLLRS-SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCE 155 (319)
T ss_pred cCceeEEEccCCC-CChhHHHHHHHHhcc-CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHH
Confidence 6799999998843 3322 22233333 569999999864 554444433 2345 788999998874 443333
Q ss_pred --HHHHhcCCCCcEEecccCCcCChHHHHh----hhcCCCccEEEecCCcccCHHHHHHH---HhhCCCCcEEeecCCCC
Q 007312 441 --VAVGEHCNSLTELSLRFCDRVGDEALIS----IGQGCSLQHLNVSGCHQIGDAGIMAI---AKGCPELNYLDVSVLQN 511 (608)
Q Consensus 441 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 511 (608)
......+++|+.|++++|. +.+..... +...++|+.|++++| .+++.+...+ ...+++|+.|++++| .
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~ 232 (319)
T cd00116 156 ALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-N 232 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-c
Confidence 3334456789999998864 55444333 344567999999886 5665554433 345788999999988 5
Q ss_pred CChHHHHHHhccC----CCcceeecccccCccHHHHHHHHH---cCCccCeeecccCCCCCHHHHH---HHHHcC-CCCc
Q 007312 512 LGDQAMVELGKGC----PLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYCPGITAAGVA---TVVSGC-ANIK 580 (608)
Q Consensus 512 l~~~~~~~l~~~~----~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~~~~~~~~~---~~~~~~-~~L~ 580 (608)
+++.++..+...+ ++|++|++++|. +++.+...+.+ .+++|+++++++|+ ++..+.. ...... +.|+
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~ 310 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELE 310 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchh
Confidence 8877776665543 789999999874 76655544433 35678889998865 4443333 233444 6888
Q ss_pred EEEecceee
Q 007312 581 KVMVEKWKV 589 (608)
Q Consensus 581 ~l~l~~~~~ 589 (608)
.++|.++++
T Consensus 311 ~~~~~~~~~ 319 (319)
T cd00116 311 SLWVKDDSF 319 (319)
T ss_pred hcccCCCCC
Confidence 888887753
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1e-14 Score=140.69 Aligned_cols=284 Identities=25% Similarity=0.224 Sum_probs=147.3
Q ss_pred EEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHH---HhcCCCCcEEEeccccCCC--hHHHH---HHhhcC
Q 007312 246 TLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAV---GNQCLSLELLALYSFQQFT--DKGLH---AVGKGC 317 (608)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~--~~~~~---~~~~~~ 317 (608)
.|+|..+.++......++..++.|+.+.++++.+++.....+ ....++++++.+.+.. +. ...+. .....+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhc
Confidence 456666666666666666667778888887777765443333 2334556666665422 11 11111 111123
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHH---HHhc
Q 007312 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLE---VGRG 394 (608)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~ 394 (608)
++|+.|+++++... .. ....+..+... ++|++|++++| .+.+.+... ....
T Consensus 81 ~~L~~L~l~~~~~~-~~-----------------------~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~ 134 (319)
T cd00116 81 CGLQELDLSDNALG-PD-----------------------GCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKD 134 (319)
T ss_pred CceeEEEccCCCCC-hh-----------------------HHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHh
Confidence 44555555444321 10 11111222222 33555555542 233222221 1123
Q ss_pred C-CCCcEEEeccCCCCChHH---HHHHHhcCccCcEEecccccccChHHHHHHHh---cCCCCcEEecccCCcCChHHHH
Q 007312 395 C-KSLQALHLVDCSSIGDDA---ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGE---HCNSLTELSLRFCDRVGDEALI 467 (608)
Q Consensus 395 ~-~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~ 467 (608)
+ ++|+.|++++|. ++... +...+..+++|++|++++| .+.+.++..+.. .+++|++|++++|. +++....
T Consensus 135 ~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 211 (319)
T cd00116 135 LPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS 211 (319)
T ss_pred CCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH
Confidence 3 556666666643 33221 2222334556666666665 444444443332 23477777777653 4444333
Q ss_pred h----hhcCCCccEEEecCCcccCHHHHHHHHhhC----CCCcEEeecCCCCCChHHHHHHh---ccCCCcceeeccccc
Q 007312 468 S----IGQGCSLQHLNVSGCHQIGDAGIMAIAKGC----PELNYLDVSVLQNLGDQAMVELG---KGCPLLKDVVLSHCR 536 (608)
Q Consensus 468 ~----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~c~ 536 (608)
. +..+++|++|++++| .+++.++..+...+ +.|++|++++| .+++.+...+. ..+++|++++++++.
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 2 233456778888775 46665665555443 68888888888 57655554442 345678888888854
Q ss_pred CccHHHHHHHHHc---C-CccCeeecccCC
Q 007312 537 QITDVGLSHLVKN---C-RMLESCHMVYCP 562 (608)
Q Consensus 537 ~l~~~~~~~~~~~---~-~~L~~L~l~~c~ 562 (608)
+++.+...+.+. . +.|+++++.+++
T Consensus 290 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 290 -FGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred -CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 777665544432 2 567888777654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.57 E-value=1.2e-14 Score=161.27 Aligned_cols=131 Identities=24% Similarity=0.301 Sum_probs=64.1
Q ss_pred CCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCC
Q 007312 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCS 474 (608)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 474 (608)
+++|+.|++++|..+.. ++..+.++++|+.|++++|..+.... .. ..+++|+.|++++|..+.... . ...+
T Consensus 777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP--~~-~~L~sL~~L~Ls~c~~L~~~p--~--~~~n 847 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLP--TG-INLESLESLDLSGCSRLRTFP--D--ISTN 847 (1153)
T ss_pred cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeC--CC-CCccccCEEECCCCCcccccc--c--cccc
Confidence 35666666666543332 23334456666666666664433211 00 135566666666665443210 0 1135
Q ss_pred ccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCcc
Q 007312 475 LQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQIT 539 (608)
Q Consensus 475 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~ 539 (608)
|+.|+++++ .++. +......+++|+.|++++|.++..... ....+++|+.+++++|..++
T Consensus 848 L~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 848 ISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred cCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 666666653 3332 222233466666666666655443211 12235666666666666554
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=3.6e-17 Score=155.71 Aligned_cols=370 Identities=15% Similarity=0.128 Sum_probs=185.5
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCch-HHHHHHhhcC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDT-GLVDLAHGCG 215 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~ 215 (608)
+|.++-.+++++ .++...++.-...++.++-|.|....+. ..++.++. +.+|++|.+.++.-.+.. .+..+
T Consensus 6 LpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~vhGELs~L----- 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLISVHGELSDL----- 77 (1255)
T ss_pred cceeecccccCC-cCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHhhhhhhccc-----
Confidence 567777787765 5555566666777888888888776653 34455544 677888888765322211 11111
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCc
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 295 (608)
|.|+++.+..+ ++...+++.-+-.+..|+.|+++.|++.+- +.-....+++-.|++++|.+.... ..+..++..|-
T Consensus 78 p~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~AKn~iVLNLS~N~IetIP-n~lfinLtDLL 153 (1255)
T KOG0444|consen 78 PRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREV--PTNLEYAKNSIVLNLSYNNIETIP-NSLFINLTDLL 153 (1255)
T ss_pred hhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhc--chhhhhhcCcEEEEcccCccccCC-chHHHhhHhHh
Confidence 66777776665 344434333334566777777777665432 222223456666677666554321 22222344445
Q ss_pred EEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceE
Q 007312 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (608)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (608)
.|++++ +.+.. ....+ ..+.+|++|.+++++ +....+..+. ++++|+.|++++...
T Consensus 154 fLDLS~-NrLe~-LPPQ~-RRL~~LqtL~Ls~NP-L~hfQLrQLP-smtsL~vLhms~TqR------------------- 209 (1255)
T KOG0444|consen 154 FLDLSN-NRLEM-LPPQI-RRLSMLQTLKLSNNP-LNHFQLRQLP-SMTSLSVLHMSNTQR------------------- 209 (1255)
T ss_pred hhcccc-chhhh-cCHHH-HHHhhhhhhhcCCCh-hhHHHHhcCc-cchhhhhhhcccccc-------------------
Confidence 555543 22211 11111 224555555555554 1111111111 122333333333211
Q ss_pred ecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEec
Q 007312 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (608)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (608)
+...+......+.||..++++.+ +++. ++...-.+++|+.|+++++ .++...+. .....+|++|++
T Consensus 210 --------Tl~N~Ptsld~l~NL~dvDlS~N-~Lp~--vPecly~l~~LrrLNLS~N-~iteL~~~--~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 210 --------TLDNIPTSLDDLHNLRDVDLSEN-NLPI--VPECLYKLRNLRRLNLSGN-KITELNMT--EGEWENLETLNL 275 (1255)
T ss_pred --------hhhcCCCchhhhhhhhhcccccc-CCCc--chHHHhhhhhhheeccCcC-ceeeeecc--HHHHhhhhhhcc
Confidence 11111111123445555555543 2222 3333334556666666654 23321110 111246667777
Q ss_pred ccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccc
Q 007312 456 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 535 (608)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 535 (608)
+.+ +++ ..+..++++++|++|.+.+ +.++-+|+..-+..+.+|+.+..++|. + +.....+. .|+.|+.|.++.+
T Consensus 276 SrN-QLt-~LP~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-L-ElVPEglc-RC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 276 SRN-QLT-VLPDAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-L-ELVPEGLC-RCVKLQKLKLDHN 349 (1255)
T ss_pred ccc-hhc-cchHHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-c-ccCchhhh-hhHHHHHhccccc
Confidence 663 233 2455666667777777766 456656655555556677777777652 2 11222222 3777777777765
Q ss_pred cCccHHHHHHHHHcCCccCeeecccCCCCC
Q 007312 536 RQITDVGLSHLVKNCRMLESCHMVYCPGIT 565 (608)
Q Consensus 536 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~ 565 (608)
.-+|-- ....-++.|+.|++++++++.
T Consensus 350 rLiTLP---eaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 350 RLITLP---EAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ceeech---hhhhhcCCcceeeccCCcCcc
Confidence 444321 212235777777777777663
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.56 E-value=4.3e-17 Score=155.22 Aligned_cols=347 Identities=16% Similarity=0.108 Sum_probs=228.4
Q ss_pred hcCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhc
Q 007312 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (608)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (608)
+.+.+++-|.+... ....++.-+..+.+|++|.+.+|.+. ...-.+.. +|.|+.+.+..+. +...++..-+...
T Consensus 29 ~qMt~~~WLkLnrt---~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRsv~~R~N~-LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRT---KLEQVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRSVIVRDNN-LKNSGIPTDIFRL 102 (1255)
T ss_pred HHhhheeEEEechh---hhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHHHhhhccc-cccCCCCchhccc
Confidence 34567888888632 23346677888999999999999864 23333333 7889999888753 2222222111111
Q ss_pred CCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCC
Q 007312 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (608)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 294 (608)
..|+.|+++.+ .+... +.-..+.+++-.|++++|++....-.- +-++..|-.|+++.|.+..-. .-...+..|
T Consensus 103 -~dLt~lDLShN-qL~Ev--P~~LE~AKn~iVLNLS~N~IetIPn~l-finLtDLLfLDLS~NrLe~LP--PQ~RRL~~L 175 (1255)
T KOG0444|consen 103 -KDLTILDLSHN-QLREV--PTNLEYAKNSIVLNLSYNNIETIPNSL-FINLTDLLFLDLSNNRLEMLP--PQIRRLSML 175 (1255)
T ss_pred -ccceeeecchh-hhhhc--chhhhhhcCcEEEEcccCccccCCchH-HHhhHhHhhhccccchhhhcC--HHHHHHhhh
Confidence 78999999987 44432 122245688999999999886654333 335677778888888765422 222346789
Q ss_pred cEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccce
Q 007312 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (608)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (608)
++|.+++ +.+....+..+.. +++|+.|.+++... +-..++.-...+.+|..++++. ++++.. ...+ ..+++|+.
T Consensus 176 qtL~Ls~-NPL~hfQLrQLPs-mtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~v-Pecl-y~l~~Lrr 249 (1255)
T KOG0444|consen 176 QTLKLSN-NPLNHFQLRQLPS-MTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLPIV-PECL-YKLRNLRR 249 (1255)
T ss_pred hhhhcCC-ChhhHHHHhcCcc-chhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCCcc-hHHH-hhhhhhhe
Confidence 9999987 3333333333322 56677777777652 2222333334567888899886 334331 2223 34689999
Q ss_pred EecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEe
Q 007312 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (608)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (608)
|+|++ +.++......- .-.+|+.|+++.+ .++. ++...-.+++|++|.+.++ .++-+++..-...+..|+.+.
T Consensus 250 LNLS~-N~iteL~~~~~--~W~~lEtLNlSrN-QLt~--LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 250 LNLSG-NKITELNMTEG--EWENLETLNLSRN-QLTV--LPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred eccCc-CceeeeeccHH--HHhhhhhhccccc-hhcc--chHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHH
Confidence 99999 66765443221 2368999999985 3433 5555556899999988775 677777777777788899988
Q ss_pred cccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCC
Q 007312 455 LRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNL 512 (608)
Q Consensus 455 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 512 (608)
.+++. -+..++.++.+.+|+.|.++.+..++ +...+.-++.|+.|++..|+++
T Consensus 323 aanN~--LElVPEglcRC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 323 AANNK--LELVPEGLCRCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhccc--cccCchhhhhhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcCc
Confidence 88743 34567888888899999999977776 3333344799999999999875
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=1.2e-14 Score=161.45 Aligned_cols=343 Identities=16% Similarity=0.169 Sum_probs=210.4
Q ss_pred hCCCCceeecCCCCCCC--c--hHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHH
Q 007312 187 VCNQLEDLNLRFCEGLT--D--TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAV 262 (608)
Q Consensus 187 ~~~~L~~L~l~~~~~~~--~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 262 (608)
.+++|+.|.+....... . ..+..-+....++|+.|++.++. +...+ ..+ ...+|++|++.++.+... ...
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP-~~f--~~~~L~~L~L~~s~l~~L--~~~ 629 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMP-SNF--RPENLVKLQMQGSKLEKL--WDG 629 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCC-CcC--CccCCcEEECcCcccccc--ccc
Confidence 37788888875431000 0 00000011222568888887762 22111 111 347888999988766432 112
Q ss_pred HhcCCccceeeecccC-CChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHh
Q 007312 263 AQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT 341 (608)
Q Consensus 263 ~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 341 (608)
...+++|+.|+++.+. +.. ++.+ ..+++|++|++.+|..+.. +......+++|+.|++++|..+... +.. .
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~--ip~l-s~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~L--p~~-i 701 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKE--IPDL-SMATNLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEIL--PTG-I 701 (1153)
T ss_pred cccCCCCCEEECCCCCCcCc--CCcc-ccCCcccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCcc--CCc-C
Confidence 2457889999987543 221 1122 3478999999988766543 2223345889999999988654321 111 1
Q ss_pred cCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCC--h--HH-HHH
Q 007312 342 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIG--D--DA-ICS 416 (608)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~--~~-~~~ 416 (608)
.+++|+.|.+++|..+.. +....++|+.|++.+ +.+...+. . ..+++|+.|.+.++.... . .. ...
T Consensus 702 ~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~-n~i~~lP~--~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDE-TAIEEFPS--N-LRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CCCCCCEEeCCCCCCccc-----cccccCCcCeeecCC-Cccccccc--c-ccccccccccccccchhhccccccccchh
Confidence 468899999998865432 222346899999987 44433221 1 146788888887642100 0 00 011
Q ss_pred HHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHh
Q 007312 417 IAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAK 496 (608)
Q Consensus 417 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 496 (608)
....+++|+.|++++|..... +.....++++|+.|++++|..+.... ....+++|+.|++++|..+.. +..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~~L~sL~~L~Ls~c~~L~~-----~p~ 843 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLP--TGINLESLESLDLSGCSRLRT-----FPD 843 (1153)
T ss_pred hhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeC--CCCCccccCEEECCCCCcccc-----ccc
Confidence 122357899999998865443 22234578999999999998765422 122567899999999876542 222
Q ss_pred hCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCH
Q 007312 497 GCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITA 566 (608)
Q Consensus 497 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 566 (608)
..++|+.|+++++ .++... .. ...+++|+.|++.+|+.++.... -...+++|+.+++++|+.+..
T Consensus 844 ~~~nL~~L~Ls~n-~i~~iP-~s-i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 844 ISTNISDLNLSRT-GIEEVP-WW-IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred cccccCEeECCCC-CCccCh-HH-HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccc
Confidence 3578999999998 465322 12 24589999999999998876443 233578899999999988763
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.55 E-value=4.5e-14 Score=145.03 Aligned_cols=266 Identities=25% Similarity=0.427 Sum_probs=118.9
Q ss_pred HHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCC-CCCCH--HHHHHHHhcCCCCcEEEecCCCCCCh
Q 007312 283 ALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC-YFLSD--MGLEAIATGCKELTHLEINGCHNIGT 359 (608)
Q Consensus 283 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~ 359 (608)
....+...++.|+.+.+.++..+.+.....+...+++|+.|+++++ ..... .........+++|+.|+++.+..+++
T Consensus 179 ~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd 258 (482)
T KOG1947|consen 179 ILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD 258 (482)
T ss_pred HHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc
Confidence 3333443455555555555555544444444444555555555541 11111 11122333344455555554444444
Q ss_pred hHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHH
Q 007312 360 MGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNG 439 (608)
Q Consensus 360 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 439 (608)
.++..++..|++|++|.+..|..+++.++..+...+++|++|++++|..+++.++.....++++++.|.+..+..
T Consensus 259 ~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----- 333 (482)
T KOG1947|consen 259 IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----- 333 (482)
T ss_pred hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----
Confidence 444444444455555554444444444444444444445555554444444444444444444444433322211
Q ss_pred HHHHHhcCCCCcEEecccCCcCChHHHHhhhcCC--CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHH
Q 007312 440 IVAVGEHCNSLTELSLRFCDRVGDEALISIGQGC--SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAM 517 (608)
Q Consensus 440 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 517 (608)
|..+++..+..+.... .+..+.+.+|+.+++..+.... .......+.+.+|+.++ ..+
T Consensus 334 ------------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l 393 (482)
T KOG1947|consen 334 ------------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESL 393 (482)
T ss_pred ------------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHH
Confidence 1122222222222221 2333333333333333332222 11111133344444444 333
Q ss_pred HHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHH
Q 007312 518 VELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVV 573 (608)
Q Consensus 518 ~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 573 (608)
......+..++.|.+..|...+...+......+..++.+.+.+|+.++......+.
T Consensus 394 ~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (482)
T KOG1947|consen 394 ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFA 449 (482)
T ss_pred HHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhh
Confidence 33333334467777777766666666665544666777777777777666555443
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.55 E-value=4.5e-14 Score=145.07 Aligned_cols=286 Identities=31% Similarity=0.516 Sum_probs=217.7
Q ss_pred cCCCCCEEECC--CCccchhhHHHHHhcCCccceeeec-ccCCChHHHHHHHhcCCCCcEEEeccc-cCCCh--HHHHHH
Q 007312 240 HCKSLETLSLD--SEFIHNKGVHAVAQGCPLLRVLKLQ-CINVTDEALVAVGNQCLSLELLALYSF-QQFTD--KGLHAV 313 (608)
Q Consensus 240 ~~~~L~~L~l~--~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~--~~~~~~ 313 (608)
.+..++.+... ...........+...++.|+.+.+. +..+.+.....+...++.|+.|++.++ ..... .....+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 238 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL 238 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh
Confidence 34455555554 3345555566666668999999997 456777677788888999999999872 22222 223345
Q ss_pred hhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHh
Q 007312 314 GKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR 393 (608)
Q Consensus 314 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 393 (608)
...+++|+.|++..+..+++.++..+...+++|+.|.+.+|..+++.++..++..|++|++|++++|..+++..+..+..
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHH
Confidence 66689999999999988899999999988999999999988889999999999999999999999999998888888888
Q ss_pred cCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccC-hHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcC
Q 007312 394 GCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIG-NNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG 472 (608)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 472 (608)
++++++.|.+..+.. ++.++.+.+.++.... +.........++.++.+.+.+|. ..+.+.
T Consensus 319 ~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~------ 379 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNG------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGL------ 379 (482)
T ss_pred hCcchhhhhhhhcCC------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcch------
Confidence 899999987766432 5555555555554444 45666667778888888888876 554443
Q ss_pred CCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHc
Q 007312 473 CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKN 549 (608)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 549 (608)
.+.+.+|+.++ ..+......+..++.|+++.|..+++..+......+.+++.+++.+|..++......+...
T Consensus 380 ----~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 380 ----ELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred ----HHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 34556777776 6666666656669999999998888888887765578899999999998888777666543
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.39 E-value=2.4e-14 Score=143.06 Aligned_cols=271 Identities=17% Similarity=0.138 Sum_probs=143.6
Q ss_pred CccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCC
Q 007312 267 PLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKEL 346 (608)
Q Consensus 267 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 346 (608)
++|+.|..+.+.+..... .....+|++++++. +.+.. +..+...+++|+.+.+..+.. + .+..-.....+|
T Consensus 219 ~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~-n~l~~--lp~wi~~~~nle~l~~n~N~l-~--~lp~ri~~~~~L 289 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDV---HPVPLNLQYLDISH-NNLSN--LPEWIGACANLEALNANHNRL-V--ALPLRISRITSL 289 (1081)
T ss_pred cchheeeeccCcceeecc---ccccccceeeecch-hhhhc--chHHHHhcccceEecccchhH-H--hhHHHHhhhhhH
Confidence 455555555554441111 11235677777765 33322 224444477777777776652 1 111111223455
Q ss_pred cEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcE
Q 007312 347 THLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKK 426 (608)
Q Consensus 347 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 426 (608)
+.|.+..+. +.. +.........|++|+|.. +.+...+...+..-...|+.|..+... +... ...-...++.|+.
T Consensus 290 ~~l~~~~ne-l~y--ip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~l-p~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 290 VSLSAAYNE-LEY--IPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNK-LSTL-PSYEENNHAALQE 363 (1081)
T ss_pred HHHHhhhhh-hhh--CCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhcc-cccc-ccccchhhHHHHH
Confidence 555554421 100 111122246677777766 444443321111001113333333211 1100 0001122456677
Q ss_pred EecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEee
Q 007312 427 LHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDV 506 (608)
Q Consensus 427 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 506 (608)
|.+.++ .+++..+..+. +.++|+.|+++|+ .+.......+.++..|++|++++| .++.-. .-..+|+.|+.|..
T Consensus 364 LylanN-~Ltd~c~p~l~-~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp--~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 364 LYLANN-HLTDSCFPVLV-NFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLP--DTVANLGRLHTLRA 437 (1081)
T ss_pred HHHhcC-cccccchhhhc-cccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhh--HHHHhhhhhHHHhh
Confidence 777765 57776665554 5688999999984 455555556666777899999985 454332 22235788888888
Q ss_pred cCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 507 SVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 507 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
.+| .+... .++. .+|.|+.++++. ++++...+..... .|+||+|+++++..+
T Consensus 438 hsN-~l~~f--Pe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 438 HSN-QLLSF--PELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNTRL 489 (1081)
T ss_pred cCC-ceeec--hhhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCccc
Confidence 777 33322 2333 378888888886 5577766655432 378999999887753
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=3.7e-14 Score=141.70 Aligned_cols=405 Identities=18% Similarity=0.130 Sum_probs=191.2
Q ss_pred HHHHHhcCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCC-chHHH
Q 007312 130 LNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT-DTGLV 208 (608)
Q Consensus 130 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~ 208 (608)
+..+-+..+ |++|++++... . .++.-+...++|+.|+++.|.+.. ....+ ..+.+|+.|.|.+..... +.++.
T Consensus 38 l~~~~~~v~-L~~l~lsnn~~-~--~fp~~it~l~~L~~ln~s~n~i~~-vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 38 LEFVEKRVK-LKSLDLSNNQI-S--SFPIQITLLSHLRQLNLSRNYIRS-VPSSC-SNMRNLQYLNLKNNRLQSLPASIS 111 (1081)
T ss_pred hHHhhheee-eEEeecccccc-c--cCCchhhhHHHHhhcccchhhHhh-Cchhh-hhhhcchhheeccchhhcCchhHH
Confidence 344444333 88888875422 1 122233356677778887776542 22222 236677777777654222 22333
Q ss_pred HHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCC-------------------ccchhhHHHHHhcCCcc
Q 007312 209 DLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSE-------------------FIHNKGVHAVAQGCPLL 269 (608)
Q Consensus 209 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~~~~~L 269 (608)
.+ .+|+.|+++++...... .....+..++.+..++| .+...... ....+
T Consensus 112 ~l-----knl~~LdlS~N~f~~~P---l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~----~i~~l 179 (1081)
T KOG0618|consen 112 EL-----KNLQYLDLSFNHFGPIP---LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI----DIYNL 179 (1081)
T ss_pred hh-----hcccccccchhccCCCc---hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc----chhhh
Confidence 33 67777887776332211 11122233333333332 11111111 11122
Q ss_pred ce-eeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcE
Q 007312 270 RV-LKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (608)
Q Consensus 270 ~~-L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 348 (608)
++ |++.++.+..... ..+++|+.+.... +.+ ..+-..-++++.|....+.. +. ..... .-.+|++
T Consensus 180 ~~~ldLr~N~~~~~dl----s~~~~l~~l~c~r-n~l-----s~l~~~g~~l~~L~a~~n~l-~~-~~~~p--~p~nl~~ 245 (1081)
T KOG0618|consen 180 THQLDLRYNEMEVLDL----SNLANLEVLHCER-NQL-----SELEISGPSLTALYADHNPL-TT-LDVHP--VPLNLQY 245 (1081)
T ss_pred heeeecccchhhhhhh----hhccchhhhhhhh-ccc-----ceEEecCcchheeeeccCcc-ee-ecccc--cccccee
Confidence 22 4444443331111 1133333333321 111 11111135566666665552 21 00000 1136777
Q ss_pred EEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEe
Q 007312 349 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLH 428 (608)
Q Consensus 349 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 428 (608)
++++.. .... ++.+...|++|+.+.... +.+...+... ....+|+.|.+..|. +. -+....+++..|++|+
T Consensus 246 ~dis~n-~l~~--lp~wi~~~~nle~l~~n~-N~l~~lp~ri--~~~~~L~~l~~~~ne-l~--yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 246 LDISHN-NLSN--LPEWIGACANLEALNANH-NRLVALPLRI--SRITSLVSLSAAYNE-LE--YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred eecchh-hhhc--chHHHHhcccceEecccc-hhHHhhHHHH--hhhhhHHHHHhhhhh-hh--hCCCcccccceeeeee
Confidence 777663 2222 223334567777777766 4443322211 233455555554431 11 1222333456666676
Q ss_pred cccccccChHH--HHHH----------------------HhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCc
Q 007312 429 IRRCYKIGNNG--IVAV----------------------GEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCH 484 (608)
Q Consensus 429 l~~~~~~~~~~--~~~~----------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 484 (608)
+..+ ++.... +..+ ....+.|+.|.+.+ +.+++..+..+.....|+.|++++|
T Consensus 317 L~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyN- 393 (1081)
T KOG0618|consen 317 LQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYN- 393 (1081)
T ss_pred ehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhccccceeeeeeccc-
Confidence 6654 222110 0000 01123455566665 3466667777777777777777774
Q ss_pred ccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 485 QIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 485 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
.++.-. .....+++.|+.|++|+| .++.-. ..+ ..++.|+.|...++ .+.... +++ .++.|+.++++ |+++
T Consensus 394 rL~~fp-as~~~kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL~ahsN-~l~~fP--e~~-~l~qL~~lDlS-~N~L 464 (1081)
T KOG0618|consen 394 RLNSFP-ASKLRKLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTLRAHSN-QLLSFP--ELA-QLPQLKVLDLS-CNNL 464 (1081)
T ss_pred ccccCC-HHHHhchHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHHhhcCC-ceeech--hhh-hcCcceEEecc-cchh
Confidence 333211 112234566777777777 343322 222 23677777766663 344333 454 47888888886 4567
Q ss_pred CHHHHHHHHHcCCCCcEEEeccee
Q 007312 565 TAAGVATVVSGCANIKKVMVEKWK 588 (608)
Q Consensus 565 ~~~~~~~~~~~~~~L~~l~l~~~~ 588 (608)
+...++... -.|+|++|+++||.
T Consensus 465 ~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 465 SEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhC-CCcccceeeccCCc
Confidence 766665433 23788888888886
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=1.2e-11 Score=110.34 Aligned_cols=245 Identities=20% Similarity=0.230 Sum_probs=118.0
Q ss_pred HHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhc---CCCCcEEEecCCC--CCChhH---HHHH---HhcCcccceEecc
Q 007312 310 LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATG---CKELTHLEINGCH--NIGTMG---LESI---GKFCRNLTELALL 378 (608)
Q Consensus 310 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~--~~~~~~---~~~l---~~~~~~L~~L~l~ 378 (608)
+.........+++++++++. +..+....+... -++|+..++++.- ...... +..+ ...||+|++|+|+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNT-FGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCc-hhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 33444456788888888876 555555544433 3456665555421 111111 1111 1235677777777
Q ss_pred cccccCh---HHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHh------------cCccCcEEecccccccChHHHH--
Q 007312 379 YCQRIGN---LALLEVGRGCKSLQALHLVDCSSIGDDAICSIAE------------GCQNLKKLHIRRCYKIGNNGIV-- 441 (608)
Q Consensus 379 ~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------------~~~~L~~L~l~~~~~~~~~~~~-- 441 (608)
+ +.+.. .++..+..++..|++|.+.+| .++..+-..+.. .-+.|+.+...++ ++.+.+..
T Consensus 101 D-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~ 177 (382)
T KOG1909|consen 101 D-NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATAL 177 (382)
T ss_pred c-cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHH
Confidence 7 44433 234455566777777777776 344333222211 2345666665554 33333322
Q ss_pred -HHHhcCCCCcEEecccCCcCChHHH----HhhhcCCCccEEEecCCcccCHHHHHHHH---hhCCCCcEEeecCCCCCC
Q 007312 442 -AVGEHCNSLTELSLRFCDRVGDEAL----ISIGQGCSLQHLNVSGCHQIGDAGIMAIA---KGCPELNYLDVSVLQNLG 513 (608)
Q Consensus 442 -~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~ 513 (608)
..++.+|.|+.+.+.++. +...+. ..+..++.|+.|+++.| ..+..+-..+. ..+|+|+.|++++| .+.
T Consensus 178 A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dc-ll~ 254 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDC-LLE 254 (382)
T ss_pred HHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeeccccc-ccc
Confidence 223444566666665532 332222 23333445666666553 34433333332 23455555555555 444
Q ss_pred hHHHHHH----hccCCCcceeecccccCccHHHHHHHHH---cCCccCeeecccCC
Q 007312 514 DQAMVEL----GKGCPLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYCP 562 (608)
Q Consensus 514 ~~~~~~l----~~~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~ 562 (608)
+.+..++ ....|+|+.|.+.+|. ++..+...+.. ..|.|+.|++.+|.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4333222 2234555555555543 44444332221 13455555555543
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.30 E-value=1.3e-10 Score=104.05 Aligned_cols=195 Identities=24% Similarity=0.291 Sum_probs=103.2
Q ss_pred HHHHHHhCCCccEEEccCCccChHHHHHHHhhC---CCCceeecCCCC--CCCch---HH---HHHHhhcCCCccEEecC
Q 007312 156 LMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVC---NQLEDLNLRFCE--GLTDT---GL---VDLAHGCGKSLKSLGIA 224 (608)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~--~~~~~---~~---~~~~~~~~~~L~~L~l~ 224 (608)
+......+..+++++|++|.++.+....+++.+ ++|+..+++... ...+. .+ .+-..++ |+|++++|+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~-~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGC-PKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcC-CceeEeecc
Confidence 445555678899999999988877777766543 456666666431 11111 11 1112233 578888887
Q ss_pred CCCCcC---hHHHHHHHhcCCCCCEEECCCCccchhhHHHHHh------------cCCccceeeecccCCChHH---HHH
Q 007312 225 ACVKIT---DVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQ------------GCPLLRVLKLQCINVTDEA---LVA 286 (608)
Q Consensus 225 ~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------~~~~L~~L~l~~~~~~~~~---~~~ 286 (608)
.+ -+. ..++..+.++|..|++|.|.+|.++..+-..+.+ .-++|+.+....|.+.+.. +..
T Consensus 101 DN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 101 DN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 76 222 2345566677788888888777776655333221 2346666666665554432 233
Q ss_pred HHhcCCCCcEEEeccccCCChHHHH---HHhhcCCCCCeEecCCCCCCCHHHHHH---HHhcCCCCcEEEecCC
Q 007312 287 VGNQCLSLELLALYSFQQFTDKGLH---AVGKGCKKLKNLTLSDCYFLSDMGLEA---IATGCKELTHLEINGC 354 (608)
Q Consensus 287 l~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~ 354 (608)
..+..+.|+.+.+.. +.+...+.. .-..++++|+.|++..+. ++..+-.. ....+++|+.|++++|
T Consensus 180 ~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred HHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccc
Confidence 334445666666654 333222221 113345666666665554 22222222 2223445555555554
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.8e-12 Score=118.99 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=120.3
Q ss_pred hcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhc
Q 007312 341 TGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEG 420 (608)
Q Consensus 341 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 420 (608)
+.+.+|+.+.+.++ .+...+.....+.||+++.|+|+.+--....++..++..+|+|+.|+++.+. +....-......
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhh
Confidence 34567888888874 4555555567778999999999884333456777888899999999998752 211000111124
Q ss_pred CccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCC
Q 007312 421 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 500 (608)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 500 (608)
+++|+.|.+++| .++...+..+...+|+|+.|.+.+++.+... .....-++.|++|+|++++.+........ ..+|.
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~-~~~~~i~~~L~~LdLs~N~li~~~~~~~~-~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIK-ATSTKILQTLQELDLSNNNLIDFDQGYKV-GTLPG 272 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccccccee-cchhhhhhHHhhccccCCccccccccccc-ccccc
Confidence 788999999999 6888888888888999999999886422111 11112234588888888766654433333 35788
Q ss_pred CcEEeecCCCCCChHHHH-----HHhccCCCcceeeccc
Q 007312 501 LNYLDVSVLQNLGDQAMV-----ELGKGCPLLKDVVLSH 534 (608)
Q Consensus 501 L~~L~l~~~~~l~~~~~~-----~l~~~~~~L~~L~l~~ 534 (608)
|+.|+++.|+ +.+.... .....+|+|++|++..
T Consensus 273 L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~ 310 (505)
T KOG3207|consen 273 LNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE 310 (505)
T ss_pred hhhhhccccC-cchhcCCCccchhhhcccccceeeeccc
Confidence 8888887773 3322211 1122355555555555
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.22 E-value=1.3e-13 Score=124.70 Aligned_cols=253 Identities=20% Similarity=0.170 Sum_probs=125.7
Q ss_pred cCcccHHHHHhc---CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCC
Q 007312 125 LSDSGLNALADG---FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG 201 (608)
Q Consensus 125 ~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 201 (608)
+....+..+... ++.+.+|.+.+. .-..++..+..+..++.|+.+.+.+. +.++.+.. .+.|..|+.+....
T Consensus 52 ls~N~l~~l~~dl~nL~~l~vl~~~~n---~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s-~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 52 LSHNDLEVLREDLKNLACLTVLNVHDN---KLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGS-LISLVKLDCSSNEL 126 (565)
T ss_pred hccCchhhccHhhhcccceeEEEeccc---hhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhh-hhhhhhhhccccce
Confidence 444444444333 334444444432 12234445556667777777777654 34444444 56677777665432
Q ss_pred CC-chHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 202 LT-DTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 202 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
.. ..++... -.|+.++..++ ++...+ .-...+.++..+++.++.+.......+. ++.|++++...+-+.
T Consensus 127 ~el~~~i~~~-----~~l~dl~~~~N-~i~slp--~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 127 KELPDSIGRL-----LDLEDLDATNN-QISSLP--EDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLE 196 (565)
T ss_pred eecCchHHHH-----hhhhhhhcccc-ccccCc--hHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccchhhhh
Confidence 21 1122222 34555555554 232211 1112355666677777666554433333 566777766544332
Q ss_pred hHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChh
Q 007312 281 DEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTM 360 (608)
Q Consensus 281 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 360 (608)
.. ++.++ .+.+|+.|++.. +++.. +..+ .+|..|++|+++.+.. ...-.+..+.++++..|++.+ +.+...
T Consensus 197 tl-P~~lg-~l~~L~~LyL~~-Nki~~--lPef-~gcs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRd-Nklke~ 267 (565)
T KOG0472|consen 197 TL-PPELG-GLESLELLYLRR-NKIRF--LPEF-PGCSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRD-NKLKEV 267 (565)
T ss_pred cC-Chhhc-chhhhHHHHhhh-ccccc--CCCC-CccHHHHHHHhcccHH--HhhHHHHhcccccceeeeccc-cccccC
Confidence 21 11111 134444444443 22211 2222 2366777777776541 111223445678888888887 444443
Q ss_pred HHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCC
Q 007312 361 GLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCS 407 (608)
Q Consensus 361 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (608)
..+.. .+.+|++|++++ +.++..+. -..++ +|+.|.+.|++
T Consensus 268 Pde~c--lLrsL~rLDlSN-N~is~Lp~--sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 268 PDEIC--LLRSLERLDLSN-NDISSLPY--SLGNL-HLKFLALEGNP 308 (565)
T ss_pred chHHH--HhhhhhhhcccC-CccccCCc--ccccc-eeeehhhcCCc
Confidence 22222 247888999988 55554432 22344 67777777753
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.3e-11 Score=113.52 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCC
Q 007312 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCS 474 (608)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 474 (608)
+++|+.|.++.| .++...+......+|+|+.|.+.++..+..... -...+..|++|+|++++.+........+.++.
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccccccccccccccc
Confidence 455566666655 244555555555566666666655421111100 01123456666666655555544555555566
Q ss_pred ccEEEecCCcccCHHHHHHH-----HhhCCCCcEEeecCCCCCChHH-HHHHhccCCCcceeeccc
Q 007312 475 LQHLNVSGCHQIGDAGIMAI-----AKGCPELNYLDVSVLQNLGDQA-MVELGKGCPLLKDVVLSH 534 (608)
Q Consensus 475 L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~ 534 (608)
|+.|+++.| .+++...... ...+|+|++|+++.| ++.+.. +.++. .+++|+.|.+..
T Consensus 273 L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~-~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 273 LNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLR-TLENLKHLRITL 335 (505)
T ss_pred hhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchhh-ccchhhhhhccc
Confidence 666666653 3332221111 234667777777666 343321 22222 245666665443
No 24
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.06 E-value=7e-11 Score=75.84 Aligned_cols=41 Identities=41% Similarity=0.638 Sum_probs=34.0
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccce
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTL 50 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~ 50 (608)
+.||+||+.+||+||+ .+|+.++++|||+|++++.....|.
T Consensus 2 ~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred hHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHCChhhhh
Confidence 3799999999999999 9999999999999999975544443
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.94 E-value=3.5e-10 Score=116.94 Aligned_cols=256 Identities=18% Similarity=0.082 Sum_probs=117.8
Q ss_pred CCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCC
Q 007312 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (608)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 321 (608)
..-..|+++.+.++.. +... .++|+.|.+..|.++.. ....++|++|++++ +.++.. . ...++|+
T Consensus 201 ~~~~~LdLs~~~LtsL--P~~l--~~~L~~L~L~~N~Lt~L-----P~lp~~Lk~LdLs~-N~LtsL--P---~lp~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGLTTL--PDCL--PAHITTLVIPDNNLTSL-----PALPPELRTLEVSG-NQLTSL--P---VLPPGLL 265 (788)
T ss_pred CCCcEEEcCCCCCCcC--Ccch--hcCCCEEEccCCcCCCC-----CCCCCCCcEEEecC-CccCcc--c---Ccccccc
Confidence 4466788877766532 1111 24678888877766541 12246777777765 334321 1 1235677
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEE
Q 007312 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQAL 401 (608)
Q Consensus 322 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 401 (608)
.|++.++. +. .+.. ..++|+.|+++++. +.. +....++|+.|++++ +.+...+ ....+|+.|
T Consensus 266 ~L~Ls~N~-L~--~Lp~---lp~~L~~L~Ls~N~-Lt~-----LP~~p~~L~~LdLS~-N~L~~Lp-----~lp~~L~~L 327 (788)
T PRK15387 266 ELSIFSNP-LT--HLPA---LPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSD-NQLASLP-----ALPSELCKL 327 (788)
T ss_pred eeeccCCc-hh--hhhh---chhhcCEEECcCCc-ccc-----ccccccccceeECCC-CccccCC-----CCccccccc
Confidence 77776654 21 1221 22456677766632 222 111235677777766 3443321 012355666
Q ss_pred EeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEec
Q 007312 402 HLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVS 481 (608)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 481 (608)
.+++|. ++. ++ ...++|+.|+++++ .+.. +....++|+.|++++| .+... ..+ ..+|+.|+++
T Consensus 328 ~Ls~N~-L~~--LP---~lp~~Lq~LdLS~N-~Ls~-----LP~lp~~L~~L~Ls~N-~L~~L--P~l--~~~L~~LdLs 390 (788)
T PRK15387 328 WAYNNQ-LTS--LP---TLPSGLQELSVSDN-QLAS-----LPTLPSELYKLWAYNN-RLTSL--PAL--PSGLKELIVS 390 (788)
T ss_pred ccccCc-ccc--cc---ccccccceEecCCC-ccCC-----CCCCCcccceehhhcc-ccccC--ccc--ccccceEEec
Confidence 666542 221 11 11135666666654 2221 1111245555655553 23321 111 1246666666
Q ss_pred CCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccC
Q 007312 482 GCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYC 561 (608)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 561 (608)
+| .++. +....++|+.|++++| .++. +.....+|+.|+++++ .++... ..+ ..+++|+.|++++|
T Consensus 391 ~N-~Lt~-----LP~l~s~L~~LdLS~N-~Lss-----IP~l~~~L~~L~Ls~N-qLt~LP-~sl-~~L~~L~~LdLs~N 455 (788)
T PRK15387 391 GN-RLTS-----LPVLPSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRN-QLTRLP-ESL-IHLSSETTVNLEGN 455 (788)
T ss_pred CC-cccC-----CCCcccCCCEEEccCC-cCCC-----CCcchhhhhhhhhccC-cccccC-hHH-hhccCCCeEECCCC
Confidence 53 2321 1111245666666665 2331 1111234555555553 244221 122 23555666666554
Q ss_pred C
Q 007312 562 P 562 (608)
Q Consensus 562 ~ 562 (608)
+
T Consensus 456 ~ 456 (788)
T PRK15387 456 P 456 (788)
T ss_pred C
Confidence 4
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=3.2e-09 Score=109.95 Aligned_cols=242 Identities=18% Similarity=0.127 Sum_probs=109.3
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCc
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 295 (608)
++|+.|.+.++ .++..+ ...++|++|++++|.++... ...++|+.|+++.+.+.. +.. ..++|+
T Consensus 222 ~~L~~L~L~~N-~Lt~LP-----~lp~~Lk~LdLs~N~LtsLP-----~lp~sL~~L~Ls~N~L~~--Lp~---lp~~L~ 285 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLP-----ALPPELRTLEVSGNQLTSLP-----VLPPGLLELSIFSNPLTH--LPA---LPSGLC 285 (788)
T ss_pred cCCCEEEccCC-cCCCCC-----CCCCCCcEEEecCCccCccc-----CcccccceeeccCCchhh--hhh---chhhcC
Confidence 46777777665 333211 22466777777766655321 123566677666655542 111 234566
Q ss_pred EEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceE
Q 007312 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (608)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (608)
.|++.+ +.+.. +....++|+.|+++++. +.. +.. ..++|+.|.+.++. +.. ++ ...++|+.|
T Consensus 286 ~L~Ls~-N~Lt~-----LP~~p~~L~~LdLS~N~-L~~--Lp~---lp~~L~~L~Ls~N~-L~~--LP---~lp~~Lq~L 347 (788)
T PRK15387 286 KLWIFG-NQLTS-----LPVLPPGLQELSVSDNQ-LAS--LPA---LPSELCKLWAYNNQ-LTS--LP---TLPSGLQEL 347 (788)
T ss_pred EEECcC-Ccccc-----ccccccccceeECCCCc-ccc--CCC---CcccccccccccCc-ccc--cc---ccccccceE
Confidence 666655 22321 11123566666666654 211 111 11345566555532 221 11 111356666
Q ss_pred ecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEec
Q 007312 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (608)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (608)
++++ +.+...+ ...++|+.|.++++ .++. +. ...++|+.|+++++ .+.. +....++|+.|++
T Consensus 348 dLS~-N~Ls~LP-----~lp~~L~~L~Ls~N-~L~~--LP---~l~~~L~~LdLs~N-~Lt~-----LP~l~s~L~~LdL 409 (788)
T PRK15387 348 SVSD-NQLASLP-----TLPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGN-RLTS-----LPVLPSELKELMV 409 (788)
T ss_pred ecCC-CccCCCC-----CCCcccceehhhcc-cccc--Cc---ccccccceEEecCC-cccC-----CCCcccCCCEEEc
Confidence 6665 4444322 11245556665553 2221 11 11235666666654 2221 1111245666666
Q ss_pred ccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHH
Q 007312 456 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMV 518 (608)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 518 (608)
++|. +.... .+ ..+|+.|++++| .++. +..-+.++++|+.|++++| .++.....
T Consensus 410 S~N~-LssIP--~l--~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N-~Ls~~~~~ 463 (788)
T PRK15387 410 SGNR-LTSLP--ML--PSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGN-PLSERTLQ 463 (788)
T ss_pred cCCc-CCCCC--cc--hhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCC-CCCchHHH
Confidence 6643 33211 00 124556666553 3331 2111224566666666666 35444333
No 27
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=105.38 Aligned_cols=159 Identities=23% Similarity=0.236 Sum_probs=93.3
Q ss_pred cccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCC
Q 007312 370 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 449 (608)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 449 (608)
.+|++|++++...+.......+..-+|+|++|.+.+- .+....+..+..++|+|..|+|+++ ++++. ...+.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCC-CccCc---HHHhcccc
Confidence 4666777766544555555555556677777777663 3333345666666777777777765 33322 22334667
Q ss_pred CcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHH-HHH---HHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 450 LTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDA-GIM---AIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
|+.|.+.+.+......+..+..+.+|+.||++........ .+. .....+|+|+.||.|+. .+.+..+..+....|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 7777766655444455666677777777777753332222 111 12234677777777776 466666666666666
Q ss_pred Ccceeeccc
Q 007312 526 LLKDVVLSH 534 (608)
Q Consensus 526 ~L~~L~l~~ 534 (608)
+|+.+...+
T Consensus 276 ~L~~i~~~~ 284 (699)
T KOG3665|consen 276 NLQQIAALD 284 (699)
T ss_pred cHhhhhhhh
Confidence 666665443
No 28
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.84 E-value=3.1e-11 Score=109.63 Aligned_cols=403 Identities=18% Similarity=0.181 Sum_probs=188.7
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCC--CCchHHHHHHhhcC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG--LTDTGLVDLAHGCG 215 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~ 215 (608)
+++++++++++.. ..+++-+..+..|..++-.+|.+. ..+..+.. +.+|..|++.+... .+...+ .+
T Consensus 114 ~~l~~l~~s~n~~---~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i-~m----- 182 (565)
T KOG0472|consen 114 ISLVKLDCSSNEL---KELPDSIGRLLDLEDLDATNNQIS-SLPEDMVN-LSKLSKLDLEGNKLKALPENHI-AM----- 182 (565)
T ss_pred hhhhhhhccccce---eecCchHHHHhhhhhhhccccccc-cCchHHHH-HHHHHHhhccccchhhCCHHHH-HH-----
Confidence 3455555543321 112233345556666666666554 12222222 34455666655421 112111 12
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCc
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 295 (608)
..|++|+...+ .+. .-++.+ ..+.+|+.|++..|.+.... -+.+|..|++++++.+.+..-. .+....++++.
T Consensus 183 ~~L~~ld~~~N-~L~-tlP~~l-g~l~~L~~LyL~~Nki~~lP---ef~gcs~L~Elh~g~N~i~~lp-ae~~~~L~~l~ 255 (565)
T KOG0472|consen 183 KRLKHLDCNSN-LLE-TLPPEL-GGLESLELLYLRRNKIRFLP---EFPGCSLLKELHVGENQIEMLP-AEHLKHLNSLL 255 (565)
T ss_pred HHHHhcccchh-hhh-cCChhh-cchhhhHHHHhhhcccccCC---CCCccHHHHHHHhcccHHHhhH-HHHhcccccce
Confidence 56777765543 111 111122 34556666666666554321 2335666777777666554322 23334566777
Q ss_pred EEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChh-------HHHHHHhc
Q 007312 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTM-------GLESIGKF 368 (608)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~l~~~ 368 (608)
.|++.+ +++... ...+.. +.+|++|+++++. ++ ++..-..++ .|+.|.+.|.. +... +-..+.++
T Consensus 256 vLDLRd-Nklke~-Pde~cl-LrsL~rLDlSNN~-is--~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 256 VLDLRD-NKLKEV-PDEICL-LRSLERLDLSNND-IS--SLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY 327 (565)
T ss_pred eeeccc-cccccC-chHHHH-hhhhhhhcccCCc-cc--cCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence 777765 333321 111111 5667777777765 21 112222233 56666666532 1100 01111111
Q ss_pred Ccc-cceEecccc--cccC-----hHHHHHHHhcCCCCcEEEeccC--CCCChHHHHHHHhcCccCcEEecccccccChH
Q 007312 369 CRN-LTELALLYC--QRIG-----NLALLEVGRGCKSLQALHLVDC--SSIGDDAICSIAEGCQNLKKLHIRRCYKIGNN 438 (608)
Q Consensus 369 ~~~-L~~L~l~~~--~~~~-----~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 438 (608)
+.. .+.=.++.. ...+ ...+... ....+.+.|++++- ..+.++.+...-+ .-....+++.+
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~-~~~i~tkiL~~s~~qlt~VPdEVfea~~~--~~Vt~VnfskN------ 398 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDI-YAIITTKILDVSDKQLTLVPDEVFEAAKS--EIVTSVNFSKN------ 398 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccch-hhhhhhhhhcccccccccCCHHHHHHhhh--cceEEEecccc------
Confidence 000 000001100 0000 0000110 12345666666652 1223332222211 22456666654
Q ss_pred HHHHHHhcCCCC----cEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCCh
Q 007312 439 GIVAVGEHCNSL----TELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGD 514 (608)
Q Consensus 439 ~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 514 (608)
.+..+.+.++.+ +.+.+++ + ..+-....+..+++|..|+++++ .+.+-..+ + ..+..|+.|+++.++ +
T Consensus 399 qL~elPk~L~~lkelvT~l~lsn-n-~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e-~-~~lv~Lq~LnlS~Nr-F-- 470 (565)
T KOG0472|consen 399 QLCELPKRLVELKELVTDLVLSN-N-KISFVPLELSQLQKLTFLDLSNN-LLNDLPEE-M-GSLVRLQTLNLSFNR-F-- 470 (565)
T ss_pred hHhhhhhhhHHHHHHHHHHHhhc-C-ccccchHHHHhhhcceeeecccc-hhhhcchh-h-hhhhhhheecccccc-c--
Confidence 222222222222 2233333 3 23334556677788999999874 34332222 2 235669999999873 2
Q ss_pred HHHHHHhcc---CCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 515 QAMVELGKG---CPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 515 ~~~~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
+.+.+. ...++.+-.++ +++.......+ +++.+|..|++.+++ + ..++..+++|.+|++|.++||++..
T Consensus 471 ---r~lP~~~y~lq~lEtllas~-nqi~~vd~~~l-~nm~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 471 ---RMLPECLYELQTLETLLASN-NQIGSVDPSGL-KNMRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ---ccchHHHhhHHHHHHHHhcc-ccccccChHHh-hhhhhcceeccCCCc-h--hhCChhhccccceeEEEecCCccCC
Confidence 221111 22333333333 45665555544 367899999998765 3 4466678899999999999998873
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.3e-08 Score=89.12 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=59.7
Q ss_pred HHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecce--ecc
Q 007312 519 ELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERT--KRR 596 (608)
Q Consensus 519 ~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~ 596 (608)
.+.+-+|++..+.+..|+ +.+.....-...+|.+-.|++...+.-+=.++++ +.++|+|..|.++.|++.+.. ..|
T Consensus 193 ~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~~er 270 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPLRGGER 270 (418)
T ss_pred hHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccccCCcc
Confidence 344567888888888887 6655555544556777778887654333344544 478999999999999999863 446
Q ss_pred CCeEEeee
Q 007312 597 AGTVISYL 604 (608)
Q Consensus 597 ~~~~~~~~ 604 (608)
..+.|++|
T Consensus 271 r~llIaRL 278 (418)
T KOG2982|consen 271 RFLLIARL 278 (418)
T ss_pred eEEEEeec
Confidence 67888877
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.78 E-value=3.3e-08 Score=102.08 Aligned_cols=157 Identities=21% Similarity=0.236 Sum_probs=92.9
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCc
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 295 (608)
.+|++|+++|...+....+..+...+|.|++|.+.+..+....+..+...+|+|..|+++++.++.- .. ...+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SG-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HH-HhccccHH
Confidence 5677777777655555555666667777777777776666666666666777777777776666553 11 22356677
Q ss_pred EEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHH-HHH---HHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcc
Q 007312 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDM-GLE---AIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 371 (608)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 371 (608)
.|.+.+.+-.+...+..+.. +.+|+.|+++........ .+. +....+|+|+.|+.++ +.+....++.+...-|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 77666544333344555555 677777777765433222 111 1122456777777776 55555555555554455
Q ss_pred cceEec
Q 007312 372 LTELAL 377 (608)
Q Consensus 372 L~~L~l 377 (608)
|+.+..
T Consensus 277 L~~i~~ 282 (699)
T KOG3665|consen 277 LQQIAA 282 (699)
T ss_pred Hhhhhh
Confidence 555543
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=5.9e-09 Score=91.29 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=56.9
Q ss_pred ccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchh-hHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcE
Q 007312 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNK-GVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (608)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 296 (608)
++.+.+.+|.--+...+..+...+..++++++.+|.+++. .+..+.+.+|.|+.|++++|.+... +..+.....+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence 3344444542222233455556677777777777777654 3556666777777777777766431 1112112345555
Q ss_pred EEeccccCCChHHHHHHhhcCCCCCeEecCCC
Q 007312 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDC 328 (608)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 328 (608)
|.+.+ ..+.-.....+...+|.++.|+++.+
T Consensus 126 lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 55554 33333333344444555555554443
No 32
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.62 E-value=1.4e-08 Score=65.74 Aligned_cols=38 Identities=39% Similarity=0.571 Sum_probs=31.6
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcc
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSR 47 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~ 47 (608)
++||+|++.+||+||+ ..|+.+++.|||+|++++....
T Consensus 4 ~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 4 SDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTTHH
T ss_pred HHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcCCC
Confidence 3699999999999999 9999999999999999975543
No 33
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.61 E-value=4.1e-07 Score=78.92 Aligned_cols=254 Identities=14% Similarity=0.135 Sum_probs=113.6
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCC---CCcEEEecCC--CCCChhH-------HHHHHhcCcccceEecccccccC
Q 007312 317 CKKLKNLTLSDCYFLSDMGLEAIATGCK---ELTHLEINGC--HNIGTMG-------LESIGKFCRNLTELALLYCQRIG 384 (608)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~---~L~~L~l~~~--~~~~~~~-------~~~l~~~~~~L~~L~l~~~~~~~ 384 (608)
+..++.++++++. +..+...++..... +|+..+++.. ....+.. ++++. .||+|+..+|++ +.+.
T Consensus 29 ~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSD-NAfg 105 (388)
T COG5238 29 MDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSD-NAFG 105 (388)
T ss_pred hcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeeccc-cccC
Confidence 6777888888776 55666666554443 3333333321 0111111 11122 356666666665 3222
Q ss_pred h---HHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcC
Q 007312 385 N---LALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRV 461 (608)
Q Consensus 385 ~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 461 (608)
. ..+..+....+.|++|.+++|. +...+-..+...+..| +...-+..-|.|++..+..+. +
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~l--------------a~nKKaa~kp~Le~vicgrNR-l 169 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHL--------------AYNKKAADKPKLEVVICGRNR-L 169 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHH--------------HHHhhhccCCCceEEEeccch-h
Confidence 2 2334444555666666666542 2211111111000000 000001223555555555432 2
Q ss_pred ChHH---HHhhhcC-CCccEEEecCCcccCHHHHHHHH----hhCCCCcEEeecCCCCCChHHHHHHhc---cCCCccee
Q 007312 462 GDEA---LISIGQG-CSLQHLNVSGCHQIGDAGIMAIA----KGCPELNYLDVSVLQNLGDQAMVELGK---GCPLLKDV 530 (608)
Q Consensus 462 ~~~~---~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L 530 (608)
.... .....+. ..|+.+.+.. +.|...|+..+. ..+++|+.|++.+| .++-.+-..++. ..+.|++|
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhc
Confidence 1111 1111111 2466666665 345544443332 23566666666666 344443333322 34566667
Q ss_pred ecccccCccHHHHHHHHHc-----CCccCeeecccCCCCC----HHHHHHHH-HcCCCCcEEEecceeeecc
Q 007312 531 VLSHCRQITDVGLSHLVKN-----CRMLESCHMVYCPGIT----AAGVATVV-SGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 531 ~l~~c~~l~~~~~~~~~~~-----~~~L~~L~l~~c~~~~----~~~~~~~~-~~~~~L~~l~l~~~~~~~~ 592 (608)
.+.+|- ++..|...+.+. .|+|..|...++..-. ..++..+. ...|-|..+.+.+|++++.
T Consensus 248 ~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 248 RLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 776663 555555554433 3555555554432111 12222222 2356666666677776654
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.61 E-value=6.6e-09 Score=94.67 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=53.9
Q ss_pred HhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhcc
Q 007312 444 GEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKG 523 (608)
Q Consensus 444 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 523 (608)
++.+|+|+.|++++ +.++.....++.....+++|.+..+ .+... -..+++++..|+.|++.+| +|+-.....+. .
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v-~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~-~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRN-KLEFV-SSGMFQGLSGLKTLSLYDN-QITTVAPGAFQ-T 344 (498)
T ss_pred HhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcc-hHHHH-HHHhhhccccceeeeecCC-eeEEEeccccc-c
Confidence 55677777777777 4466666666666677777777774 33221 2334456777888888777 45544433332 2
Q ss_pred CCCcceeeccccc
Q 007312 524 CPLLKDVVLSHCR 536 (608)
Q Consensus 524 ~~~L~~L~l~~c~ 536 (608)
...|.+|.+-.++
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 4566667666544
No 35
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.61 E-value=2.8e-08 Score=61.94 Aligned_cols=37 Identities=32% Similarity=0.432 Sum_probs=33.5
Q ss_pred CChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhccc
Q 007312 11 LPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRT 48 (608)
Q Consensus 11 LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~ 48 (608)
||+|++.+||.||+ ..|+.+++.|||+|+.++.....
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~~~~ 37 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDSHDF 37 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcChhh
Confidence 79999999999999 99999999999999999755433
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=4.8e-08 Score=82.12 Aligned_cols=108 Identities=27% Similarity=0.374 Sum_probs=26.3
Q ss_pred CCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCC
Q 007312 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKS 243 (608)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 243 (608)
.++++|+|+++.++ .++.+...+.+|+.|+++++.-..-.++..+ ++|++|+++++ .++..+ ..+...+|+
T Consensus 19 ~~~~~L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L-----~~L~~L~L~~N-~I~~i~-~~l~~~lp~ 89 (175)
T PF14580_consen 19 VKLRELNLRGNQIS--TIENLGATLDKLEVLDLSNNQITKLEGLPGL-----PRLKTLDLSNN-RISSIS-EGLDKNLPN 89 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT---------TT--EEE--SS----S-C-HHHHHH-TT
T ss_pred cccccccccccccc--cccchhhhhcCCCEEECCCCCCccccCccCh-----hhhhhcccCCC-CCCccc-cchHHhCCc
Confidence 34555555555543 2233332344555555555432222222222 56666666665 333221 112234566
Q ss_pred CCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
|++|.+++|.+.+..-......+|+|+.|++.+|.+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666666554332222234556666666555443
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.49 E-value=3.1e-06 Score=73.64 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=28.1
Q ss_pred HHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceee
Q 007312 158 SLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLN 195 (608)
Q Consensus 158 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 195 (608)
..+.-+..+++++||||.++.+....++....+-+.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~ 61 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLR 61 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhccee
Confidence 33445889999999999999999888887554433333
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=2.9e-07 Score=77.46 Aligned_cols=58 Identities=22% Similarity=0.217 Sum_probs=14.6
Q ss_pred CCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCC
Q 007312 447 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 509 (608)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (608)
+.+|+.|++++|. +.. +..+..++.|+.|++++| .++..+ ..+...+|+|+.|++++|
T Consensus 41 l~~L~~L~Ls~N~-I~~--l~~l~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITK--LEGLPGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -TT--EEE-TTS---S----TT----TT--EEE--SS----S-C-HHHHHH-TT--EEE-TTS
T ss_pred hcCCCEEECCCCC-Ccc--ccCccChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcCC
Confidence 3455555555532 321 223333445555555552 333211 112223555555555555
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.25 E-value=1.6e-06 Score=90.82 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=45.5
Q ss_pred CCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcc
Q 007312 292 LSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRN 371 (608)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 371 (608)
++|+.|++.+ +.++... ..+ .++|+.|+++++. ++. +... ..++|+.|+++++. +.... ..+ ..+
T Consensus 199 ~~L~~L~Ls~-N~LtsLP-~~l---~~nL~~L~Ls~N~-Lts--LP~~--l~~~L~~L~Ls~N~-L~~LP-~~l---~s~ 263 (754)
T PRK15370 199 EQITTLILDN-NELKSLP-ENL---QGNIKTLYANSNQ-LTS--IPAT--LPDTIQEMELSINR-ITELP-ERL---PSA 263 (754)
T ss_pred cCCcEEEecC-CCCCcCC-hhh---ccCCCEEECCCCc-ccc--CChh--hhccccEEECcCCc-cCcCC-hhH---hCC
Confidence 5677888776 3443211 111 2577777777665 221 1111 11367777777643 22210 111 145
Q ss_pred cceEecccccccChHHHHHHHhcCCCCcEEEeccC
Q 007312 372 LTELALLYCQRIGNLALLEVGRGCKSLQALHLVDC 406 (608)
Q Consensus 372 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (608)
|+.|++++ +.+...+- . -.++|+.|++++|
T Consensus 264 L~~L~Ls~-N~L~~LP~-~---l~~sL~~L~Ls~N 293 (754)
T PRK15370 264 LQSLDLFH-NKISCLPE-N---LPEELRYLSVYDN 293 (754)
T ss_pred CCEEECcC-CccCcccc-c---cCCCCcEEECCCC
Confidence 67777765 44443211 0 1246666666664
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.25 E-value=1.6e-07 Score=85.90 Aligned_cols=91 Identities=21% Similarity=0.092 Sum_probs=57.0
Q ss_pred HhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhc
Q 007312 392 GRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ 471 (608)
Q Consensus 392 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 471 (608)
+..+++|++|+++++ .++.. -...+++...++.|.+..+ .+.. .-..++..+..|+.|++++ ++++.....++..
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i-~~~aFe~~a~l~eL~L~~N-~l~~-v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRI-EDGAFEGAAELQELYLTRN-KLEF-VSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQT 344 (498)
T ss_pred HhhcccceEeccCCC-ccchh-hhhhhcchhhhhhhhcCcc-hHHH-HHHHhhhccccceeeeecC-CeeEEEecccccc
Confidence 456778888888774 44432 2234455677777777665 2221 1233445677888888887 4577777777777
Q ss_pred CCCccEEEecCCcccC
Q 007312 472 GCSLQHLNVSGCHQIG 487 (608)
Q Consensus 472 ~~~L~~L~l~~~~~~~ 487 (608)
+.+|.+|++-.++.-.
T Consensus 345 ~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 345 LFSLSTLNLLSNPFNC 360 (498)
T ss_pred cceeeeeehccCcccC
Confidence 7778888877655443
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.8e-06 Score=71.85 Aligned_cols=90 Identities=24% Similarity=0.373 Sum_probs=66.8
Q ss_pred CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCcc
Q 007312 474 SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRML 553 (608)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 553 (608)
.++.++-+++ .|..+|+..+- .++.++.|.+.+|..+.|.++..+....|+|+.|+|++|+.||+.++..+. .+++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 3667777663 56667777664 477888888888877888888877776788888888888888888877775 57888
Q ss_pred CeeecccCCCCCH
Q 007312 554 ESCHMVYCPGITA 566 (608)
Q Consensus 554 ~~L~l~~c~~~~~ 566 (608)
+.|.+++-+.+..
T Consensus 179 r~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 179 RRLHLYDLPYVAN 191 (221)
T ss_pred HHHHhcCchhhhc
Confidence 8888877665554
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=2.6e-07 Score=81.27 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=7.1
Q ss_pred CCCCcEEEecCCC
Q 007312 343 CKELTHLEINGCH 355 (608)
Q Consensus 343 ~~~L~~L~l~~~~ 355 (608)
+++|+.+.++.|.
T Consensus 213 f~~l~~~~~s~~~ 225 (490)
T KOG1259|consen 213 FRNLKTLKFSALS 225 (490)
T ss_pred hhhhheeeeeccc
Confidence 3456666665543
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.17 E-value=9.1e-06 Score=85.29 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=10.3
Q ss_pred CCh-HHHHHHHhhcCChhh
Q 007312 11 LPD-EVILEIFRHLDSKAS 28 (608)
Q Consensus 11 LP~-eil~~If~~L~~~~d 28 (608)
-|. .+|..|=.|...+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~ 43 (754)
T PRK15370 25 PLKEEIWNKISAFFSSEHQ 43 (754)
T ss_pred CchhHHHHHHHHHhccchH
Confidence 344 466677777663443
No 44
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=2.5e-06 Score=71.01 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcc
Q 007312 449 SLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLK 528 (608)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 528 (608)
.++.++-+++ .+..+++..+..+.+++.|.+.+|..+.+.++..+..-.++|+.|+|++|+.|++.++..+.+ +++|+
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 4566777664 366778888888888888888888888888888888778899999999998899988888875 88999
Q ss_pred eeecccccCccH
Q 007312 529 DVVLSHCRQITD 540 (608)
Q Consensus 529 ~L~l~~c~~l~~ 540 (608)
.|.+.+-+.+..
T Consensus 180 ~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 180 RLHLYDLPYVAN 191 (221)
T ss_pred HHHhcCchhhhc
Confidence 998888654443
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.04 E-value=6.6e-07 Score=78.82 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=26.4
Q ss_pred CCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEecc
Q 007312 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYS 301 (608)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 301 (608)
+.|+++++++|.++..+- -.+-.|.++.|+++.|.+.... .+ ..+++|++|++++
T Consensus 284 q~LtelDLS~N~I~~iDE--SvKL~Pkir~L~lS~N~i~~v~--nL-a~L~~L~~LDLS~ 338 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDE--SVKLAPKLRRLILSQNRIRTVQ--NL-AELPQLQLLDLSG 338 (490)
T ss_pred hhhhhccccccchhhhhh--hhhhccceeEEeccccceeeeh--hh-hhcccceEeeccc
Confidence 456666666665543221 2223556666666655543311 11 1245555555554
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.97 E-value=4.8e-06 Score=88.82 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=10.2
Q ss_pred cCCCCcEEEecCCCC
Q 007312 342 GCKELTHLEINGCHN 356 (608)
Q Consensus 342 ~~~~L~~L~l~~~~~ 356 (608)
.+++|+.|.+.+|..
T Consensus 715 ~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 715 SLGNLEELSILDCGI 729 (889)
T ss_pred cccCcceEEEEcCCC
Confidence 456777777777653
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.76 E-value=1.4e-05 Score=85.44 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=9.5
Q ss_pred CCCCcEEeecCCCCC
Q 007312 498 CPELNYLDVSVLQNL 512 (608)
Q Consensus 498 ~~~L~~L~l~~~~~l 512 (608)
.|+|+.|.+..|+.+
T Consensus 769 ~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLL 783 (889)
T ss_pred cCcccEEEEeccccc
Confidence 466777777766543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=1.6e-05 Score=79.12 Aligned_cols=204 Identities=20% Similarity=0.149 Sum_probs=102.0
Q ss_pred HHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHH
Q 007312 310 LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALL 389 (608)
Q Consensus 310 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 389 (608)
+..+...+++++.|.+-....-...+.-.+ ..+..|+.|.+.+|+.-...++..+- ..|++|.-.+ . ...+.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~i-fpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~--S--l~Al~ 147 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISI-FPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHN--S--LDALR 147 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCcee-ccccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhc--c--HHHHH
Confidence 334444456666666554332111111111 24578999999887644444444443 3444443221 1 11122
Q ss_pred HHHhcC----------CCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCC
Q 007312 390 EVGRGC----------KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD 459 (608)
Q Consensus 390 ~~~~~~----------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 459 (608)
.++..| ..|...+++.+ .+. .+....+-++.+++|+++++ .+.+.. ..+.|++|++|+|++|.
T Consensus 148 ~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~--~mD~SLqll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 148 HVFASCGGDISNSPVWNKLATASFSYN-RLV--LMDESLQLLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHHHHhccccccchhhhhHhhhhcchh-hHH--hHHHHHHHHHHhhhhccchh-hhhhhH---HHHhcccccccccccch
Confidence 221111 13333444432 222 13334445678888888876 343322 34568888888888843
Q ss_pred cCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChH-HHHHHhccCCCcceeeccccc
Q 007312 460 RVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQ-AMVELGKGCPLLKDVVLSHCR 536 (608)
Q Consensus 460 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~c~ 536 (608)
+.... ..-...+.|+.|.+++|. ++. +..+ .++.+|+.||+++| -+.+. .+..+. .+..|+.|.|.|++
T Consensus 221 -L~~vp-~l~~~gc~L~~L~lrnN~-l~t--L~gi-e~LksL~~LDlsyN-ll~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 221 -LRHVP-QLSMVGCKLQLLNLRNNA-LTT--LRGI-ENLKSLYGLDLSYN-LLSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred -hcccc-ccchhhhhheeeeecccH-HHh--hhhH-HhhhhhhccchhHh-hhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 32211 111122458888888753 221 2222 34678888888876 23322 222222 25677888888755
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.41 E-value=1e-06 Score=70.90 Aligned_cols=38 Identities=3% Similarity=0.093 Sum_probs=16.9
Q ss_pred CCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeee
Q 007312 550 CRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 590 (608)
Q Consensus 550 ~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 590 (608)
+.+|+.|.+++++-++ ++.-++.+..|++|.+++|+++
T Consensus 149 lt~lqil~lrdndll~---lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLLS---LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hcceeEEeeccCchhh---CcHHHHHHHHHHHHhcccceee
Confidence 4455555555443221 2222333445555555555544
No 50
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.35 E-value=2.2e-06 Score=69.00 Aligned_cols=86 Identities=17% Similarity=0.160 Sum_probs=44.0
Q ss_pred hcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCC
Q 007312 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCK 318 (608)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 318 (608)
..+|.|+.|++.+|.+.+..+..-+..+..|+.|.++.+.+... +..+ ..+.+|+.|.+.+.+-++- ...+.. +.
T Consensus 99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~l-p~dv-g~lt~lqil~lrdndll~l--pkeig~-lt 173 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEIL-PPDV-GKLTNLQILSLRDNDLLSL--PKEIGD-LT 173 (264)
T ss_pred CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccC-Chhh-hhhcceeEEeeccCchhhC--cHHHHH-HH
Confidence 35677777777777766665544444556677777765544321 1111 2245566666554322211 112222 45
Q ss_pred CCCeEecCCCC
Q 007312 319 KLKNLTLSDCY 329 (608)
Q Consensus 319 ~L~~L~l~~~~ 329 (608)
.|++|+|.++.
T Consensus 174 ~lrelhiqgnr 184 (264)
T KOG0617|consen 174 RLRELHIQGNR 184 (264)
T ss_pred HHHHHhcccce
Confidence 55666665543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.99 E-value=8.6e-05 Score=74.12 Aligned_cols=209 Identities=20% Similarity=0.219 Sum_probs=117.4
Q ss_pred HHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHH
Q 007312 362 LESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIV 441 (608)
Q Consensus 362 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 441 (608)
+..+...+++++.|.+-....-.......+ ..+..|++|.+.+|+--+..++..+- .+|++|.-.+. . ..+.
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~i-fpF~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~S---l-~Al~ 147 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISI-FPFRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHNS---L-DALR 147 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCcee-ccccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhcc---H-HHHH
Confidence 444555667777777654322221111222 25789999999998644444444333 24555443221 1 1222
Q ss_pred HHHhcC----------CCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCC
Q 007312 442 AVGEHC----------NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQN 511 (608)
Q Consensus 442 ~~~~~~----------~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 511 (608)
.++..| ..|...+.++|. +. ..-..+.-++.|++|++++| .++. +..+ .-|+.|++|||+.|.
T Consensus 148 ~v~ascggd~~ns~~Wn~L~~a~fsyN~-L~-~mD~SLqll~ale~LnLshN-k~~~--v~~L-r~l~~LkhLDlsyN~- 220 (1096)
T KOG1859|consen 148 HVFASCGGDISNSPVWNKLATASFSYNR-LV-LMDESLQLLPALESLNLSHN-KFTK--VDNL-RRLPKLKHLDLSYNC- 220 (1096)
T ss_pred HHHHHhccccccchhhhhHhhhhcchhh-HH-hHHHHHHHHHHhhhhccchh-hhhh--hHHH-Hhcccccccccccch-
Confidence 222211 245555555533 21 11233334457999999995 4443 3333 448999999999873
Q ss_pred CChHHHHHHh-ccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeee
Q 007312 512 LGDQAMVELG-KGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 590 (608)
Q Consensus 512 l~~~~~~~l~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 590 (608)
+.-. ..+. .+| +|+.|.+.++. ++. +..+ .++++|+.|++++|= +....--..+..+..|+.|++.||++-
T Consensus 221 L~~v--p~l~~~gc-~L~~L~lrnN~-l~t--L~gi-e~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 221 LRHV--PQLSMVGC-KLQLLNLRNNA-LTT--LRGI-ENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccc--cccchhhh-hheeeeecccH-HHh--hhhH-HhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3221 1111 123 49999999854 442 3333 356899999998742 333222234566789999999999987
Q ss_pred cce
Q 007312 591 ERT 593 (608)
Q Consensus 591 ~~~ 593 (608)
-.-
T Consensus 293 c~p 295 (1096)
T KOG1859|consen 293 CAP 295 (1096)
T ss_pred cCH
Confidence 543
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.95 E-value=0.00013 Score=49.82 Aligned_cols=59 Identities=29% Similarity=0.314 Sum_probs=29.0
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccC
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN 278 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 278 (608)
+|++|++++| .+..... ..+..+++|++|++++|.+...... .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i~~~-~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNNNLTSIPPD-AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECT-TTTTTGTTESEEEETSSSESEEETT-TTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCCccCccCHH-HHcCCCCCCEEeCcCCc
Confidence 4555555555 3332211 1224456666666666655433222 23355666666665543
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.84 E-value=0.00022 Score=48.74 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=15.5
Q ss_pred CCcEEecccCCcCChHHHHhhhcCCCccEEEecC
Q 007312 449 SLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 482 (608)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 482 (608)
+|++|++++| .+.......+..+++|++|++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~ 34 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN 34 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC
Confidence 4555555553 24433334444444555555554
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.00048 Score=60.71 Aligned_cols=102 Identities=22% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCC
Q 007312 422 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPEL 501 (608)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 501 (608)
.+.++|+..+| .+++. .++..+|.|+.|.++-+ .++ .+..+..+.+|++|.|+.| .|.+..-....+++|+|
T Consensus 19 ~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvN-kIs--sL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVN-KIS--SLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCC-CccHH---HHHHhcccceeEEeecc-ccc--cchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence 34555555555 34332 23344566666666553 232 2334444445666666652 34433322333456666
Q ss_pred cEEeecCCCCCChHH---HHHHhccCCCcceee
Q 007312 502 NYLDVSVLQNLGDQA---MVELGKGCPLLKDVV 531 (608)
Q Consensus 502 ~~L~l~~~~~l~~~~---~~~l~~~~~~L~~L~ 531 (608)
+.|+|..|+-.+..+ -....+.+|+|+.|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666554222222 122233456666654
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.65 E-value=0.0021 Score=34.67 Aligned_cols=22 Identities=50% Similarity=0.803 Sum_probs=9.7
Q ss_pred CCcceeecccccCccHHHHHHH
Q 007312 525 PLLKDVVLSHCRQITDVGLSHL 546 (608)
Q Consensus 525 ~~L~~L~l~~c~~l~~~~~~~~ 546 (608)
|+|++|+|++|+.+++.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 3444444444444444444433
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.52 E-value=0.002 Score=61.84 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=81.0
Q ss_pred hcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcC
Q 007312 393 RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG 472 (608)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 472 (608)
..+++++.|++++| .+.. ++ .-.++|++|.+++|..+.... .. -.++|+.|++++|..+... .
T Consensus 49 ~~~~~l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP--~~--LP~nLe~L~Ls~Cs~L~sL-------P 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIES--LP---VLPNELTEITIENCNNLTTLP--GS--IPEGLEKLTVCHCPEISGL-------P 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCCCcccCC--ch--hhhhhhheEccCccccccc-------c
Confidence 45799999999998 3433 22 213479999999887653211 11 1358999999998655311 1
Q ss_pred CCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCc
Q 007312 473 CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRM 552 (608)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 552 (608)
.+|+.|++..+ .... +..+ -++|+.|.+.++........... --++|+.|.+.+|..+.. ...+. .+
T Consensus 112 ~sLe~L~L~~n-~~~~--L~~L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L--P~~LP---~S 178 (426)
T PRK15386 112 ESVRSLEIKGS-ATDS--IKNV---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL--PEKLP---ES 178 (426)
T ss_pred cccceEEeCCC-CCcc--cccC---cchHhheeccccccccccccccc--cCCcccEEEecCCCcccC--ccccc---cc
Confidence 35888988753 2221 2222 25688888754321111111111 126899999999875421 11222 57
Q ss_pred cCeeecccC
Q 007312 553 LESCHMVYC 561 (608)
Q Consensus 553 L~~L~l~~c 561 (608)
|+.|.+..+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 888888764
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.00043 Score=60.72 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccch
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHN 256 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (608)
|+|++|.++.+..-...++..++..+|+|++|++++|++..
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 45555555554222223334444455666666666665554
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.0016 Score=57.50 Aligned_cols=101 Identities=27% Similarity=0.380 Sum_probs=46.6
Q ss_pred CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCcc
Q 007312 474 SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRML 553 (608)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 553 (608)
+.++|+..+| .+++.. +...+|.|+.|.|+-| +|+. +..+. .|.+|++|+|.. +.|.+..-....+++|+|
T Consensus 20 ~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvN-kIss--L~pl~-rCtrLkElYLRk-N~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVN-KISS--LAPLQ-RCTRLKELYLRK-NCIESLDELEYLKNLPSL 90 (388)
T ss_pred HhhhhcccCC-CccHHH---HHHhcccceeEEeecc-cccc--chhHH-HHHHHHHHHHHh-cccccHHHHHHHhcCchh
Confidence 3455555554 233321 2233555666666555 2322 11111 255666666655 235544444444456666
Q ss_pred CeeecccCCCCCHHHHH---HHHHcCCCCcEEE
Q 007312 554 ESCHMVYCPGITAAGVA---TVVSGCANIKKVM 583 (608)
Q Consensus 554 ~~L~l~~c~~~~~~~~~---~~~~~~~~L~~l~ 583 (608)
+.|+|..+|-....|-. .++.-+|+|++|+
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666554444332222 2334456666553
No 59
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.38 E-value=0.0046 Score=33.37 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=17.1
Q ss_pred CCCCcEEeecCCCCCChHHHHHHh
Q 007312 498 CPELNYLDVSVLQNLGDQAMVELG 521 (608)
Q Consensus 498 ~~~L~~L~l~~~~~l~~~~~~~l~ 521 (608)
|++|+.|++++|++++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467777777777777777776654
No 60
>PLN03150 hypothetical protein; Provisional
Probab=96.36 E-value=0.0048 Score=64.73 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=28.6
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 509 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (608)
.+++|+.|++++|. +.......+..+++|+.|++++| .++..... .+.++++|+.|++++|
T Consensus 440 ~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~-~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 440 KLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYN-SFNGSIPE-SLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCC-CCCCCCch-HHhcCCCCCEEECcCC
Confidence 34555666665532 33333334445555555665553 23322111 1223555555555555
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.17 E-value=0.0015 Score=59.04 Aligned_cols=47 Identities=34% Similarity=0.463 Sum_probs=39.7
Q ss_pred CCCCCcccCCC----hHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccce
Q 007312 2 RGHDRINTCLP----DEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTL 50 (608)
Q Consensus 2 ~~~~~~~~~LP----~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~ 50 (608)
-..|.| +.|| ++|-+.||+||+ ..++.++-+|||+|+++....-.|.
T Consensus 70 LqrDFi-~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l~dg~~WK 120 (499)
T KOG0281|consen 70 LQRDFI-TALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVLSDGMLWK 120 (499)
T ss_pred HHHHHH-HhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHhccchHHH
Confidence 345777 5899 999999999999 8999999999999999976554443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.12 E-value=0.0028 Score=60.84 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=96.8
Q ss_pred hcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhc
Q 007312 367 KFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEH 446 (608)
Q Consensus 367 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 446 (608)
..|++++.|++++| .+...+ . -.++|+.|.+++|..++. +.... .++|++|.+++|..+. .-
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP--~---LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~--------sL 110 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP--V---LPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS--------GL 110 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC--C---CCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc--------cc
Confidence 34799999999986 455443 1 125799999999876533 22211 3589999999986443 12
Q ss_pred CCCCcEEecccCCcCChHHHHhhhcCC-CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 447 CNSLTELSLRFCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
.++|+.|++..+. .. .+..++ +|++|.+.+++.......... --++|++|++++|..+.. ...+ .+
T Consensus 111 P~sLe~L~L~~n~-~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~L--P~~L---P~ 177 (426)
T PRK15386 111 PESVRSLEIKGSA-TD-----SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIIL--PEKL---PE 177 (426)
T ss_pred ccccceEEeCCCC-Cc-----ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccC--cccc---cc
Confidence 3579999986522 22 234455 599999865332211111111 126799999999964321 0111 25
Q ss_pred CcceeecccccCcc-HHHHHHHHHcCCccCeeecccCCCCCHH
Q 007312 526 LLKDVVLSHCRQIT-DVGLSHLVKNCRMLESCHMVYCPGITAA 567 (608)
Q Consensus 526 ~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 567 (608)
+|+.|.++.+...+ ......+. +++ .|.+.+|-.+...
T Consensus 178 SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL~~~ 216 (426)
T PRK15386 178 SLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLLSPD 216 (426)
T ss_pred cCcEEEecccccccccCcccccc---ccc-EechhhhcccCHH
Confidence 89999987642111 11112222 445 7777777555443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.11 E-value=0.0036 Score=55.06 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=15.9
Q ss_pred CCCccEEEccCCc--cChHHHHHHHhhCCCCceeecCCC
Q 007312 163 CIHLKSLDLQGCY--VGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 163 ~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
+++|++|.++.|. +. ..+..++..+|+|++|+++++
T Consensus 64 Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCccccc-ccceehhhhCCceeEEeecCC
Confidence 3455555555542 21 223333334455555555544
No 64
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.10 E-value=0.0017 Score=64.83 Aligned_cols=193 Identities=26% Similarity=0.402 Sum_probs=123.9
Q ss_pred cceEecccccccChHHHHHH---HhcCCCCcEEEeccCCCCChHHHHHHHhcCc----cCcEEecccccccChHHHHHHH
Q 007312 372 LTELALLYCQRIGNLALLEV---GRGCKSLQALHLVDCSSIGDDAICSIAEGCQ----NLKKLHIRRCYKIGNNGIVAVG 444 (608)
Q Consensus 372 L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~ 444 (608)
+..|.+.+ +.+.+.+...+ ....+.|+.|+++++ .+++.+...+...++ .++.|.+..| .++..+...+.
T Consensus 89 l~~L~L~~-~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLAN-NRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhh-CccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 66777777 34444444443 345688999999995 466877777776554 4567777777 45555554444
Q ss_pred h---cCCCCcEEecccCCcCChHHHH----hhh----cCCCccEEEecCCcccCHHHHHHHHh---hCCC-CcEEeecCC
Q 007312 445 E---HCNSLTELSLRFCDRVGDEALI----SIG----QGCSLQHLNVSGCHQIGDAGIMAIAK---GCPE-LNYLDVSVL 509 (608)
Q Consensus 445 ~---~~~~L~~L~l~~~~~~~~~~~~----~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~-L~~L~l~~~ 509 (608)
. ....++.++++.|... ..+.. .+. ...++++|++.+| .++......+.. ..+. +..|++..|
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 3 3578888888886533 32222 222 2346999999986 466555444432 3344 666888887
Q ss_pred CCCChHHHHHHhccC----CCcceeecccccCccHHHHHHHHH---cCCccCeeecccCCCCCHHHHHHH
Q 007312 510 QNLGDQAMVELGKGC----PLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYCPGITAAGVATV 572 (608)
Q Consensus 510 ~~l~~~~~~~l~~~~----~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~~~~~~~~~~~ 572 (608)
.+.|.++..+.+.+ +.++.++++.|+ +++.+...+.+ .++.++.+.+++++ +.+.+....
T Consensus 244 -~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~ 310 (478)
T KOG4308|consen 244 -KLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELL 310 (478)
T ss_pred -CcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHH
Confidence 68888887776544 456899999975 77776655443 46778888888765 445444443
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.89 E-value=0.0032 Score=52.94 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=15.5
Q ss_pred CCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
.+...++|++|.+.. ...+ ..+++|.+|.+.++
T Consensus 42 d~~d~iDLtdNdl~~--l~~l-p~l~rL~tLll~nN 74 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNL-PHLPRLHTLLLNNN 74 (233)
T ss_pred cccceecccccchhh--cccC-CCccccceEEecCC
Confidence 345566666665421 1111 12455555555543
No 66
>PLN03150 hypothetical protein; Provisional
Probab=95.86 E-value=0.02 Score=60.16 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=42.5
Q ss_pred CCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeE
Q 007312 244 LETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNL 323 (608)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 323 (608)
++.|+|+++.+....... +..+++|+.|+++.+.+.......+ ..+++|+.|++++ +.+.......+. .+++|+.|
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~-N~lsg~iP~~l~-~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSY-NSFNGSIPESLG-QLTSLRIL 495 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCC-CCCCCCCchHHh-cCCCCCEE
Confidence 555666665554332222 2245666666666665544333333 2356666666665 333322222333 36677777
Q ss_pred ecCCCC
Q 007312 324 TLSDCY 329 (608)
Q Consensus 324 ~l~~~~ 329 (608)
+++++.
T Consensus 496 ~Ls~N~ 501 (623)
T PLN03150 496 NLNGNS 501 (623)
T ss_pred ECcCCc
Confidence 776664
No 67
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.79 E-value=0.0056 Score=55.02 Aligned_cols=43 Identities=42% Similarity=0.614 Sum_probs=35.3
Q ss_pred Ccc-cCCChHHHHHHHhh-----cCChhhhhhhhhccHhHHHhhhhcccc
Q 007312 6 RIN-TCLPDEVILEIFRH-----LDSKASRDACSLVCRRWLTLERLSRTT 49 (608)
Q Consensus 6 ~~~-~~LP~eil~~If~~-----L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (608)
++. +.|||||+..||.. |+ .+++.++++|||.|+..++.+..|
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d-~rsL~~~s~vCr~F~~~~R~~~lw 152 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLD-LRSLEQLSLVCRGFYKCARDPELW 152 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcc-hhhHHHhHhhHHHHHHHHcChHHH
Confidence 444 68999999999985 45 799999999999999987665444
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.52 E-value=0.0099 Score=59.43 Aligned_cols=59 Identities=31% Similarity=0.377 Sum_probs=33.3
Q ss_pred CceeeccccCCCChhh---HHHHHHhCCCccEEEccCCccChHHHHHHHhhCCC----CceeecCCC
Q 007312 140 LEKLSLIWCSNISSLG---LMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQ----LEDLNLRFC 199 (608)
Q Consensus 140 L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~----L~~L~l~~~ 199 (608)
+..|.+.+| .+...+ +...+...+.|..|++++|.+.+.....+...++. |+.|.+..|
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c 154 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC 154 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc
Confidence 555666655 233222 33444556777778888777777776666554332 344455444
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.51 E-value=0.014 Score=36.31 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=18.1
Q ss_pred ccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeee
Q 007312 552 MLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 590 (608)
Q Consensus 552 ~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 590 (608)
+|++|++.+|. +++ ++..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCCCCC
Confidence 45556665543 332 2222455666666666666655
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.47 E-value=0.019 Score=35.77 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=6.6
Q ss_pred cCCCCCEEECCCCcc
Q 007312 240 HCKSLETLSLDSEFI 254 (608)
Q Consensus 240 ~~~~L~~L~l~~~~~ 254 (608)
++++|++|++++|.+
T Consensus 22 ~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 22 NLPNLETLNLSNNPI 36 (44)
T ss_dssp TCTTSSEEEETSSCC
T ss_pred CCCCCCEEEecCCCC
Confidence 444444444444433
No 71
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.17 E-value=0.015 Score=55.24 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=33.0
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhh
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLER 44 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~ 44 (608)
++||+|++..|..+|+...|+++.+.|||.||..+.
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 469999999999999878999999999999999753
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.53 E-value=0.028 Score=55.96 Aligned_cols=171 Identities=20% Similarity=0.171 Sum_probs=81.4
Q ss_pred CCCccEEEccCCccChHHHHHHHhhC-CCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcC
Q 007312 163 CIHLKSLDLQGCYVGDQGLAAVGKVC-NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (608)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (608)
.+.++.|++.++.+.+-. ...... ++|+.|++++... ... . -.....++|+.|+++.+ .+.+.... ....
T Consensus 115 ~~~l~~L~l~~n~i~~i~--~~~~~~~~nL~~L~l~~N~i-~~l--~-~~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~ 185 (394)
T COG4886 115 LTNLTSLDLDNNNITDIP--PLIGLLKSNLKELDLSDNKI-ESL--P-SPLRNLPNLKNLDLSFN-DLSDLPKL--LSNL 185 (394)
T ss_pred ccceeEEecCCcccccCc--cccccchhhcccccccccch-hhh--h-hhhhccccccccccCCc-hhhhhhhh--hhhh
Confidence 356666666666554211 111112 2566666665421 111 0 01112266777777666 33332211 1145
Q ss_pred CCCCEEECCCCccchhhHHHHHhcCCccceeeecccC-CChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCC
Q 007312 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKL 320 (608)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 320 (608)
++|+.|+++++.+....... .....|+++.++.+. +... .......++..+.+.+ +.+.. +......++++
T Consensus 186 ~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~-n~~~~--~~~~~~~l~~l 257 (394)
T COG4886 186 SNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSN-NKLED--LPESIGNLSNL 257 (394)
T ss_pred hhhhheeccCCccccCchhh--hhhhhhhhhhhcCCcceecc---hhhhhcccccccccCC-ceeee--ccchhcccccc
Confidence 67777777776665432221 123346777776653 2111 1111234455554332 22211 12333346778
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 007312 321 KNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (608)
Q Consensus 321 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 354 (608)
++|++.++.. ++.. . .....+++.|++++.
T Consensus 258 ~~L~~s~n~i-~~i~--~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 258 ETLDLSNNQI-SSIS--S-LGSLTNLRELDLSGN 287 (394)
T ss_pred ceeccccccc-cccc--c-ccccCccCEEeccCc
Confidence 8888887762 2211 1 335578888888774
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.06 E-value=0.048 Score=28.64 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=15.4
Q ss_pred CCCccEEEccCCccChHHHHHHH
Q 007312 163 CIHLKSLDLQGCYVGDQGLAAVG 185 (608)
Q Consensus 163 ~~~L~~L~l~~~~~~~~~~~~l~ 185 (608)
+++|++|+|++|.++++++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788888888888877777664
No 74
>PF13013 F-box-like_2: F-box-like domain
Probab=93.97 E-value=0.046 Score=41.65 Aligned_cols=33 Identities=30% Similarity=0.217 Sum_probs=28.5
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccH--hHHHh
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCR--RWLTL 42 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr--~W~~~ 42 (608)
.+||+||+..||+|.+ ..+...+..+|+ +|++-
T Consensus 23 ~DLP~ELl~~I~~~C~-~~~l~~l~~~~~~~r~~r~ 57 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCN-DPILLALSRTCRAYRSWRD 57 (109)
T ss_pred hhChHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999 899999999998 55443
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.90 E-value=0.048 Score=46.20 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=67.5
Q ss_pred CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHH-HHHHHHcCCc
Q 007312 474 SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVG-LSHLVKNCRM 552 (608)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~ 552 (608)
+...++++++.... +..+ ..++.|..|.+++| .|++.. ..+...+|+|+.|.+.+++ +...+ +..++ .||+
T Consensus 43 ~~d~iDLtdNdl~~---l~~l-p~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa-~~p~ 114 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK---LDNL-PHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNS-IQELGDLDPLA-SCPK 114 (233)
T ss_pred ccceecccccchhh---cccC-CCccccceEEecCC-cceeec-cchhhhccccceEEecCcc-hhhhhhcchhc-cCCc
Confidence 57778887754322 1122 34678888889888 465432 2223346889999888843 55443 33343 6888
Q ss_pred cCeeecccCCCCCHHHHH-HHHHcCCCCcEEEecceeeec
Q 007312 553 LESCHMVYCPGITAAGVA-TVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 553 L~~L~l~~c~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~ 591 (608)
|++|.+-+++--...... .++..+|+|+.|+.++-...+
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 999888887644332222 234557888888877665443
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.47 E-value=0.026 Score=44.44 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=58.0
Q ss_pred CCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCch--HHHHHHhhcCC
Q 007312 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDT--GLVDLAHGCGK 216 (608)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~ 216 (608)
.+..++++.|.-....+....+.....|+..+|++|.+. ...+.+...+|.++.|++.+.. +++. .+..+ +
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam-----~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNE-ISDVPEELAAM-----P 100 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhh-hhhchHHHhhh-----H
Confidence 455667776643334444445556677888888888765 2344444446667777777542 1111 12222 6
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHH
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVH 260 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 260 (608)
.|+.|+++.+. +... +..+.. +.++-.|+..++.....+..
T Consensus 101 aLr~lNl~~N~-l~~~-p~vi~~-L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 101 ALRSLNLRFNP-LNAE-PRVIAP-LIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred HhhhcccccCc-cccc-hHHHHH-HHhHHHhcCCCCccccCcHH
Confidence 67777766652 2211 111211 44555555555544444444
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.36 E-value=0.0083 Score=59.84 Aligned_cols=179 Identities=19% Similarity=0.073 Sum_probs=91.9
Q ss_pred hcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcC
Q 007312 393 RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG 472 (608)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 472 (608)
..+.+|+.|++.++ .+.. +......+++|+.|+++++.-....++. .++.|+.|++++|. +. .+..+..+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~-i~--~~~~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNL-IS--DISGLESL 161 (414)
T ss_pred ccccceeeeecccc-chhh--cccchhhhhcchheeccccccccccchh----hccchhhheeccCc-ch--hccCCccc
Confidence 45678888888874 3332 3232445788888888876322222222 24558888887743 32 23333335
Q ss_pred CCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCC-
Q 007312 473 CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCR- 551 (608)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~- 551 (608)
..|+.++++++. +....... ...+.+++.+.++++.......+... ..+..+++... .++... .+. .++
T Consensus 162 ~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~----~~l~~~~l~~n-~i~~~~--~l~-~~~~ 231 (414)
T KOG0531|consen 162 KSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIREIEGLDLL----KKLVLLSLLDN-KISKLE--GLN-ELVM 231 (414)
T ss_pred hhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchhcccchHHH----HHHHHhhcccc-cceecc--Ccc-cchh
Confidence 567777777743 33222111 24567777777777742221222211 12222233331 122111 000 111
Q ss_pred -ccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeeccee
Q 007312 552 -MLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTK 594 (608)
Q Consensus 552 -~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 594 (608)
.|+.+.+.+++..... ..+..++.+..+++.+++++....
T Consensus 232 ~~L~~l~l~~n~i~~~~---~~~~~~~~l~~l~~~~n~~~~~~~ 272 (414)
T KOG0531|consen 232 LHLRELYLSGNRISRSP---EGLENLKNLPVLDLSSNRISNLEG 272 (414)
T ss_pred HHHHHHhcccCcccccc---ccccccccccccchhhcccccccc
Confidence 3677777776533221 223456888888888888775443
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.21 E-value=0.11 Score=27.22 Aligned_cols=21 Identities=48% Similarity=0.570 Sum_probs=9.9
Q ss_pred CCcceeecccccCccHHHHHHH
Q 007312 525 PLLKDVVLSHCRQITDVGLSHL 546 (608)
Q Consensus 525 ~~L~~L~l~~c~~l~~~~~~~~ 546 (608)
++|+.|+|++|. +++.++..+
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHh
Confidence 455555555543 555555444
No 79
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=92.91 E-value=0.12 Score=51.51 Aligned_cols=147 Identities=20% Similarity=0.099 Sum_probs=91.5
Q ss_pred CCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCc
Q 007312 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSL 218 (608)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 218 (608)
+|+.|++.+.. + ..++.-+..+++|+.|++++|.+.+-. ......++|+.|++++...-.-..... ....|
T Consensus 141 nL~~L~l~~N~-i--~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~L~ls~N~i~~l~~~~~----~~~~L 211 (394)
T COG4886 141 NLKELDLSDNK-I--ESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLNNLDLSGNKISDLPPEIE----LLSAL 211 (394)
T ss_pred hcccccccccc-h--hhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhhheeccCCccccCchhhh----hhhhh
Confidence 78888887642 2 223234568999999999999876322 222136789999999763221111111 11458
Q ss_pred cEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEE
Q 007312 219 KSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLA 298 (608)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 298 (608)
+++.++++..+... .....+.++..+.+..+.+... ......++.++.|+++.+.+..... .....+++.|+
T Consensus 212 ~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~ 283 (394)
T COG4886 212 EELDLSNNSIIELL---SSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELD 283 (394)
T ss_pred hhhhhcCCcceecc---hhhhhcccccccccCCceeeec--cchhccccccceecccccccccccc---ccccCccCEEe
Confidence 88888887322221 2224567777777777665442 2333456779999998888776443 33468899999
Q ss_pred eccc
Q 007312 299 LYSF 302 (608)
Q Consensus 299 l~~~ 302 (608)
+++.
T Consensus 284 ~s~n 287 (394)
T COG4886 284 LSGN 287 (394)
T ss_pred ccCc
Confidence 8863
No 80
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.65 E-value=0.041 Score=43.41 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=73.9
Q ss_pred CCCcEEecccCCcC-ChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCC
Q 007312 448 NSLTELSLRFCDRV-GDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPL 526 (608)
Q Consensus 448 ~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 526 (608)
..+..+++++|.-+ -...+..+.....|+..++++| .... ....+...+|.++.|+++++ .+.+...+ ++ .+|.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~-fp~kft~kf~t~t~lNl~~n-eisdvPeE-~A-am~a 101 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKK-FPKKFTIKFPTATTLNLANN-EISDVPEE-LA-AMPA 101 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhh-CCHHHhhccchhhhhhcchh-hhhhchHH-Hh-hhHH
Confidence 35667778887533 2234455555567888888874 3221 12234445677888888887 46655444 43 4788
Q ss_pred cceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecce
Q 007312 527 LKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERT 593 (608)
Q Consensus 527 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 593 (608)
|+.|++..++ +... ..-+++ +.+|-.|+..++. ..+..++.+....+.|..+ .++++..+.
T Consensus 102 Lr~lNl~~N~-l~~~-p~vi~~-L~~l~~Lds~~na-~~eid~dl~~s~~~al~~l--gnepl~~~~ 162 (177)
T KOG4579|consen 102 LRSLNLRFNP-LNAE-PRVIAP-LIKLDMLDSPENA-RAEIDVDLFYSSLPALIKL--GNEPLGDET 162 (177)
T ss_pred hhhcccccCc-cccc-hHHHHH-HHhHHHhcCCCCc-cccCcHHHhccccHHHHHh--cCCcccccC
Confidence 8888888855 3322 222332 4556666665543 2233333333334444443 455555543
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.85 E-value=0.26 Score=26.98 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.0
Q ss_pred CCccEEEccCCccChHHHHHHHhh
Q 007312 164 IHLKSLDLQGCYVGDQGLAAVGKV 187 (608)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~~ 187 (608)
++|++|+|++|.+.+++...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578999999999988888887764
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.88 E-value=0.15 Score=51.94 Aligned_cols=45 Identities=31% Similarity=0.441 Sum_probs=38.2
Q ss_pred CCCCcccCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccc
Q 007312 3 GHDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTT 49 (608)
Q Consensus 3 ~~~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (608)
..|.+ +.||.|+-.+||.||+ .++.+.+++||+.|+.+.....-|
T Consensus 104 ~~dfi-~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 104 QRDFL-SLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred ccchh-hcccchhcccccccCC-HHHhhhhhhhcchhhhhhhccchh
Confidence 35666 5899999999999999 899999999999999996554433
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.24 E-value=0.16 Score=50.74 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=16.7
Q ss_pred hCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
.+.+|+.|++.++.+.. +..+...+++|+.|++++.
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheecccc
Confidence 45556666665555431 1121122455555555544
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.38 E-value=0.8 Score=25.07 Aligned_cols=9 Identities=44% Similarity=0.338 Sum_probs=3.5
Q ss_pred CcEEeecCC
Q 007312 501 LNYLDVSVL 509 (608)
Q Consensus 501 L~~L~l~~~ 509 (608)
|++|+|++|
T Consensus 4 L~~LdL~~N 12 (28)
T smart00368 4 LRELDLSNN 12 (28)
T ss_pred cCEEECCCC
Confidence 333344333
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.91 E-value=2.2 Score=42.56 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=42.4
Q ss_pred cCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCC-cCChHHHHhhhcCCCccEEEecCCcccC-----HHHHHH
Q 007312 420 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCD-RVGDEALISIGQGCSLQHLNVSGCHQIG-----DAGIMA 493 (608)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~ 493 (608)
+.|.+..++++++....-..+..+....|+|..|+|+++. .+....-..-.+...|++|.+.+|+..+ .+.+.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 3455555555554333334444555555666666666541 1111111111123457777777755433 223344
Q ss_pred HHhhCCCCcEEe
Q 007312 494 IAKGCPELNYLD 505 (608)
Q Consensus 494 ~~~~~~~L~~L~ 505 (608)
+-+.+|+|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 445678877776
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.68 E-value=0.72 Score=21.75 Aligned_cols=14 Identities=7% Similarity=0.328 Sum_probs=6.6
Q ss_pred CCCcEEEecceeee
Q 007312 577 ANIKKVMVEKWKVS 590 (608)
Q Consensus 577 ~~L~~l~l~~~~~~ 590 (608)
++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.84 E-value=2.5 Score=42.15 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=7.0
Q ss_pred HHhcCCCCCEEECCCC
Q 007312 237 VGSHCKSLETLSLDSE 252 (608)
Q Consensus 237 ~~~~~~~L~~L~l~~~ 252 (608)
+....|+|++|+|++|
T Consensus 239 lsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 239 LSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHHhcchhheeecccc
Confidence 3334444444444444
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=78.69 E-value=0.38 Score=47.81 Aligned_cols=37 Identities=16% Similarity=-0.009 Sum_probs=19.9
Q ss_pred HHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 160 AQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 160 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
+.++..|+.|+|+.|.++ -....++. +| |+.|-+++.
T Consensus 117 i~~L~~lt~l~ls~NqlS-~lp~~lC~-lp-Lkvli~sNN 153 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLS-HLPDGLCD-LP-LKVLIVSNN 153 (722)
T ss_pred hhhhhHHHHhhhccchhh-cCChhhhc-Cc-ceeEEEecC
Confidence 345566777777766654 12223332 44 666666654
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=71.90 E-value=2.8 Score=31.64 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.3
Q ss_pred CcccCCChHHHHHHHhhcCChhhhhhh
Q 007312 6 RINTCLPDEVILEIFRHLDSKASRDAC 32 (608)
Q Consensus 6 ~~~~~LP~eil~~If~~L~~~~d~~~~ 32 (608)
..+..||.||-.+|++||+ ..|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~-~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLS-NKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCC-HHHHHHH
Confidence 3456799999999999999 8887543
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=65.19 E-value=4.5 Score=20.47 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=10.7
Q ss_pred CCcEEEecceeee
Q 007312 578 NIKKVMVEKWKVS 590 (608)
Q Consensus 578 ~L~~l~l~~~~~~ 590 (608)
+|++|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 5788889888887
No 91
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=65.15 E-value=1.1 Score=44.74 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=6.3
Q ss_pred hCCCCcEEeecCCC
Q 007312 497 GCPELNYLDVSVLQ 510 (608)
Q Consensus 497 ~~~~L~~L~l~~~~ 510 (608)
++..|++|-|.+|+
T Consensus 232 ~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 232 KMRHLQVLQLENNP 245 (722)
T ss_pred hhhhheeeeeccCC
Confidence 34444444444443
No 92
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=64.96 E-value=4 Score=32.28 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.3
Q ss_pred HHhccCCCcceeecc
Q 007312 519 ELGKGCPLLKDVVLS 533 (608)
Q Consensus 519 ~l~~~~~~L~~L~l~ 533 (608)
.+..++++|.. +|+
T Consensus 55 ~mF~~~~~l~~-dls 68 (120)
T PF03382_consen 55 GMFAGCSSLNQ-DLS 68 (120)
T ss_pred HHHhhhhhcCC-Ccc
Confidence 33344455555 443
No 93
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=61.23 E-value=6 Score=21.17 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=3.5
Q ss_pred cceeeccc
Q 007312 527 LKDVVLSH 534 (608)
Q Consensus 527 L~~L~l~~ 534 (608)
|+.|+|.+
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 34444444
No 94
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=60.04 E-value=8.1 Score=34.60 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.6
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhc
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLS 46 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~ 46 (608)
.+||.|+...|+..|++.+|+.+++.|--....++...
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~ 240 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER 240 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH
Confidence 58999999999999998999999999977777665443
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=56.05 E-value=11 Score=19.95 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=10.1
Q ss_pred CCCccEEEccCCccC
Q 007312 163 CIHLKSLDLQGCYVG 177 (608)
Q Consensus 163 ~~~L~~L~l~~~~~~ 177 (608)
+++|++|+|++|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 356777777777654
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=56.05 E-value=11 Score=19.95 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=10.1
Q ss_pred CCCccEEEccCCccC
Q 007312 163 CIHLKSLDLQGCYVG 177 (608)
Q Consensus 163 ~~~L~~L~l~~~~~~ 177 (608)
+++|++|+|++|.+.
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 356777777777654
No 97
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=53.46 E-value=1.8 Score=34.78 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=4.7
Q ss_pred CCCcceeecc
Q 007312 524 CPLLKDVVLS 533 (608)
Q Consensus 524 ~~~L~~L~l~ 533 (608)
+++|+.+.+.
T Consensus 80 ~~~l~~i~~~ 89 (129)
T PF13306_consen 80 CTNLKNIDIP 89 (129)
T ss_dssp -TTECEEEET
T ss_pred cccccccccC
Confidence 4555555554
No 98
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=53.33 E-value=6.5 Score=31.10 Aligned_cols=9 Identities=33% Similarity=1.010 Sum_probs=3.8
Q ss_pred HHHHcCCCC
Q 007312 571 TVVSGCANI 579 (608)
Q Consensus 571 ~~~~~~~~L 579 (608)
.++.+|.++
T Consensus 80 ~mF~~~~~l 88 (120)
T PF03382_consen 80 NMFSGCSSL 88 (120)
T ss_pred HHHhhhHHc
Confidence 334444444
No 99
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=43.32 E-value=46 Score=31.36 Aligned_cols=91 Identities=12% Similarity=0.217 Sum_probs=58.3
Q ss_pred CHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccC---CCcceeeccccc--CccHHHHHHHHHcCCccCeeecccC
Q 007312 487 GDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGC---PLLKDVVLSHCR--QITDVGLSHLVKNCRMLESCHMVYC 561 (608)
Q Consensus 487 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~c~--~l~~~~~~~~~~~~~~L~~L~l~~c 561 (608)
....+..+-.+=|.++..++.+...|+...+..+...+ ...+...+.+-. ......+..+...++.|++|++.+
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnves- 264 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVES- 264 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccc-
Confidence 34455666566789999999988888877777665433 344444444421 122334455666688899999987
Q ss_pred CCCCHHHHHHHHHcCCC
Q 007312 562 PGITAAGVATVVSGCAN 578 (608)
Q Consensus 562 ~~~~~~~~~~~~~~~~~ 578 (608)
+.++..++..++..+..
T Consensus 265 nFItg~gi~a~~~al~~ 281 (353)
T KOG3735|consen 265 NFITGLGIMALLRALQS 281 (353)
T ss_pred cccccHHHHHHHHHHhc
Confidence 46777777766544433
No 100
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=40.64 E-value=27 Score=18.76 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=9.9
Q ss_pred CCccEEEccCCccC
Q 007312 164 IHLKSLDLQGCYVG 177 (608)
Q Consensus 164 ~~L~~L~l~~~~~~ 177 (608)
.+|+.|+++.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777777777653
No 101
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=34.74 E-value=91 Score=29.51 Aligned_cols=84 Identities=19% Similarity=0.272 Sum_probs=37.6
Q ss_pred HHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhc--CCCccEEecCCCCCc--ChHHHHHHHhcCCCCCEEECCCCccc
Q 007312 180 GLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC--GKSLKSLGIAACVKI--TDVSLEAVGSHCKSLETLSLDSEFIH 255 (608)
Q Consensus 180 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (608)
.+..+...-|.++..++.+...++...+..+..+. ....+.+.+.+...- ....+......++.|++|++++|.|+
T Consensus 189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFIt 268 (353)
T KOG3735|consen 189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFIT 268 (353)
T ss_pred HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccc
Confidence 34444444456666666665555555444443322 122333333332111 11122233344455555555555555
Q ss_pred hhhHHHHH
Q 007312 256 NKGVHAVA 263 (608)
Q Consensus 256 ~~~~~~~~ 263 (608)
..++..+.
T Consensus 269 g~gi~a~~ 276 (353)
T KOG3735|consen 269 GLGIMALL 276 (353)
T ss_pred cHHHHHHH
Confidence 55554444
No 102
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=29.33 E-value=28 Score=18.69 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=10.1
Q ss_pred CCCcEEEecceeeec
Q 007312 577 ANIKKVMVEKWKVSE 591 (608)
Q Consensus 577 ~~L~~l~l~~~~~~~ 591 (608)
++|+.|.+++|+++.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 456777777777654
No 103
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=21.61 E-value=27 Score=32.57 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=35.8
Q ss_pred ccCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccce
Q 007312 8 NTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTL 50 (608)
Q Consensus 8 ~~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~ 50 (608)
.+.+|..++..|.+++. .+++.+++.|++|-.++...-..|-
T Consensus 8 le~~~~~~l~~vls~~~-~~~~~~~a~vs~rLk~~~s~~~lw~ 49 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLL-YRDLINCAYVSRRLKELGSHLPLWN 49 (386)
T ss_pred hhhcccccceeeecccc-hhhhhcceeechHHhhhhhcccccc
Confidence 35699999999999999 9999999999999999865544443
No 104
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=21.13 E-value=64 Score=30.55 Aligned_cols=36 Identities=19% Similarity=0.570 Sum_probs=29.7
Q ss_pred ccCCChHHHHHHHhhcCCh-------hhhhhhhhccHhHHHhh
Q 007312 8 NTCLPDEVILEIFRHLDSK-------ASRDACSLVCRRWLTLE 43 (608)
Q Consensus 8 ~~~LP~eil~~If~~L~~~-------~d~~~~~~vcr~W~~~~ 43 (608)
+++||.|.+..|.....+. +..++++-||+.|+++.
T Consensus 45 ~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 45 WAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred hhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 3579999999999998632 35788899999999974
No 105
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=20.65 E-value=2.9e+02 Score=18.86 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=3.4
Q ss_pred CCcEEeec
Q 007312 500 ELNYLDVS 507 (608)
Q Consensus 500 ~L~~L~l~ 507 (608)
+++.+.+.
T Consensus 12 ~~~~l~i~ 19 (70)
T PF07735_consen 12 NLEKLSIS 19 (70)
T ss_pred CCCEEEEc
Confidence 34444444
Done!