Query 007312
Match_columns 608
No_of_seqs 380 out of 3458
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 22:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2.6E-43 8.8E-48 369.9 47.0 519 4-587 3-541 (594)
2 3ogk_B Coronatine-insensitive 100.0 5.6E-44 1.9E-48 374.6 37.7 507 9-587 14-548 (592)
3 3ogk_B Coronatine-insensitive 100.0 7E-35 2.4E-39 305.6 35.5 403 179-594 102-530 (592)
4 2p1m_B Transport inhibitor res 100.0 6.3E-34 2.2E-38 298.6 39.1 399 181-593 97-522 (594)
5 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-28 9.6E-33 247.2 39.8 411 138-582 3-460 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 8.3E-28 2.8E-32 243.7 38.6 403 120-556 10-460 (461)
7 2ast_B S-phase kinase-associat 100.0 4.5E-27 1.6E-31 227.5 24.8 284 9-373 10-299 (336)
8 3rgz_A Protein brassinosteroid 99.9 1.4E-28 4.8E-33 263.7 -10.5 424 136-590 124-551 (768)
9 3t6q_A CD180 antigen; protein- 99.9 1.1E-27 3.7E-32 251.5 -6.4 283 291-592 277-562 (606)
10 3rgz_A Protein brassinosteroid 99.9 1.3E-27 4.4E-32 256.2 -7.9 425 136-591 98-528 (768)
11 3t6q_A CD180 antigen; protein- 99.9 1.4E-27 4.7E-32 250.7 -8.3 427 136-591 55-537 (606)
12 3vq2_A TLR4, TOLL-like recepto 99.9 6.4E-27 2.2E-31 245.6 -6.8 423 136-591 54-559 (606)
13 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-24 4.4E-29 225.3 6.9 425 135-592 47-512 (549)
14 3vq2_A TLR4, TOLL-like recepto 99.9 7.4E-26 2.5E-30 237.6 -4.4 281 265-572 283-566 (606)
15 1ziw_A TOLL-like receptor 3; i 99.9 2E-25 6.9E-30 237.4 -4.2 429 137-591 48-518 (680)
16 1o6v_A Internalin A; bacterial 99.9 1.4E-21 4.8E-26 197.3 20.7 210 162-406 44-253 (466)
17 2z63_A TOLL-like receptor 4, v 99.9 6.4E-26 2.2E-30 236.5 -11.8 421 136-592 50-533 (570)
18 2z7x_B TOLL-like receptor 1, v 99.9 6.3E-24 2.2E-28 218.4 2.5 418 138-592 21-483 (520)
19 2z81_A CD282 antigen, TOLL-lik 99.9 2.8E-23 9.5E-28 215.3 7.0 420 138-591 26-487 (549)
20 1o6v_A Internalin A; bacterial 99.9 3.5E-21 1.2E-25 194.4 20.7 345 137-540 45-389 (466)
21 4fmz_A Internalin; leucine ric 99.9 8.2E-21 2.8E-25 184.3 22.1 303 216-590 44-346 (347)
22 2z63_A TOLL-like receptor 4, v 99.9 4.8E-25 1.7E-29 229.8 -11.0 418 138-592 28-509 (570)
23 4fmz_A Internalin; leucine ric 99.9 1.6E-20 5.4E-25 182.3 21.2 104 446-562 241-344 (347)
24 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-23 4.6E-28 223.4 -0.5 215 369-593 404-625 (680)
25 2ast_B S-phase kinase-associat 99.8 1.2E-19 4.1E-24 175.3 22.8 243 269-522 49-293 (336)
26 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-24 3.9E-29 235.9 -16.4 138 136-279 46-186 (844)
27 2z7x_B TOLL-like receptor 1, v 99.8 2E-21 6.8E-26 199.7 3.7 395 135-569 42-486 (520)
28 3v47_A TOLL-like receptor 5B a 99.8 9.2E-22 3.2E-26 198.8 0.9 211 188-406 29-249 (455)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.4E-22 1.2E-26 207.1 -3.0 418 138-591 52-511 (562)
30 4ecn_A Leucine-rich repeat pro 99.8 1.5E-22 5E-27 215.1 -7.0 344 216-591 448-841 (876)
31 3j0a_A TOLL-like receptor 5; m 99.8 4.6E-23 1.6E-27 223.3 -12.1 426 137-591 23-494 (844)
32 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8.2E-22 2.8E-26 204.2 -3.4 418 137-591 30-487 (562)
33 4eco_A Uncharacterized protein 99.8 7.8E-23 2.7E-27 214.0 -11.4 345 216-591 206-601 (636)
34 4eco_A Uncharacterized protein 99.8 1.1E-22 3.7E-27 212.9 -10.7 103 449-562 489-598 (636)
35 3bz5_A Internalin-J, INLJ; leu 99.8 3.2E-20 1.1E-24 185.5 7.2 346 137-590 41-387 (457)
36 3bz5_A Internalin-J, INLJ; leu 99.8 3.3E-20 1.1E-24 185.4 7.0 322 136-561 62-384 (457)
37 3v47_A TOLL-like receptor 5B a 99.8 3.4E-21 1.2E-25 194.7 -0.4 156 138-301 30-189 (455)
38 4ecn_A Leucine-rich repeat pro 99.8 2.9E-21 9.9E-26 205.2 -2.7 320 216-564 491-840 (876)
39 2ca6_A RAN GTPase-activating p 99.8 2.1E-17 7.2E-22 162.5 24.1 266 314-587 28-340 (386)
40 2ca6_A RAN GTPase-activating p 99.8 9.1E-17 3.1E-21 158.0 25.3 125 156-281 24-173 (386)
41 3o6n_A APL1; leucine-rich repe 99.7 5E-19 1.7E-23 174.5 2.5 315 188-573 44-360 (390)
42 4g8a_A TOLL-like receptor 4; l 99.7 8.6E-21 2.9E-25 200.7 -10.9 440 128-592 41-582 (635)
43 3o6n_A APL1; leucine-rich repe 99.7 2.4E-18 8.2E-23 169.6 6.6 320 137-552 44-365 (390)
44 1jl5_A Outer protein YOPM; leu 99.7 3.8E-20 1.3E-24 184.8 -8.4 296 165-536 72-368 (454)
45 2id5_A Lingo-1, leucine rich r 99.7 8.9E-19 3.1E-23 177.8 -1.7 106 189-301 32-137 (477)
46 3oja_B Anopheles plasmodium-re 99.7 5.2E-18 1.8E-22 176.5 3.1 306 216-562 51-356 (597)
47 3oja_B Anopheles plasmodium-re 99.7 4.7E-18 1.6E-22 176.9 2.3 318 188-550 50-369 (597)
48 2id5_A Lingo-1, leucine rich r 99.7 1.7E-18 5.8E-23 175.7 -1.1 59 138-199 32-90 (477)
49 3goz_A Leucine-rich repeat-con 99.7 2E-15 6.9E-20 146.7 18.5 245 310-562 14-295 (362)
50 4g8a_A TOLL-like receptor 4; l 99.6 7.8E-19 2.7E-23 185.7 -8.4 408 164-592 52-557 (635)
51 1jl5_A Outer protein YOPM; leu 99.6 4.6E-17 1.6E-21 162.5 2.0 376 138-592 11-411 (454)
52 3goz_A Leucine-rich repeat-con 99.6 3E-14 1E-18 138.4 20.8 265 272-546 3-304 (362)
53 1xku_A Decorin; proteoglycan, 99.5 1.2E-16 3.9E-21 153.6 -4.1 204 370-588 121-330 (330)
54 1xku_A Decorin; proteoglycan, 99.5 6.7E-16 2.3E-20 148.3 -0.8 35 499-534 293-328 (330)
55 3o53_A Protein LRIM1, AGAP0063 99.5 2.9E-15 1E-19 142.6 1.4 129 421-560 143-271 (317)
56 2z80_A TOLL-like receptor 2, v 99.5 5.6E-15 1.9E-19 143.2 1.6 137 447-591 173-315 (353)
57 3o53_A Protein LRIM1, AGAP0063 99.5 4.1E-15 1.4E-19 141.6 0.0 149 162-329 32-180 (317)
58 2z80_A TOLL-like receptor 2, v 99.5 3.1E-14 1.1E-18 138.0 5.8 36 369-406 197-232 (353)
59 2ft3_A Biglycan; proteoglycan, 99.5 3.6E-16 1.2E-20 150.2 -7.9 86 446-535 239-330 (332)
60 2ft3_A Biglycan; proteoglycan, 99.5 1.3E-16 4.5E-21 153.3 -11.2 134 448-588 193-331 (332)
61 3e4g_A ATP synthase subunit S, 99.4 1.4E-13 4.8E-18 114.5 7.0 105 474-581 62-171 (176)
62 3e4g_A ATP synthase subunit S, 99.4 2.5E-13 8.5E-18 113.0 8.1 106 448-555 61-171 (176)
63 3g06_A SSPH2 (leucine-rich rep 99.4 4.2E-13 1.4E-17 138.0 10.3 114 139-280 41-154 (622)
64 3g06_A SSPH2 (leucine-rich rep 99.4 3.2E-14 1.1E-18 146.3 1.6 113 189-329 40-152 (622)
65 3un9_A NLR family member X1; l 99.4 6.9E-12 2.3E-16 121.1 17.0 171 370-547 72-260 (372)
66 2z66_A Variable lymphocyte rec 99.4 2.7E-15 9.1E-20 142.5 -7.1 134 369-509 100-233 (306)
67 1h6u_A Internalin H; cell adhe 99.4 1.3E-12 4.5E-17 123.4 10.9 127 446-591 105-231 (308)
68 3zyi_A Leucine-rich repeat-con 99.4 1.8E-14 6.1E-19 144.7 -2.2 202 318-535 75-276 (452)
69 3zyj_A Leucine-rich repeat-con 99.4 1.9E-14 6.6E-19 143.9 -2.6 227 318-562 64-290 (440)
70 4fcg_A Uncharacterized protein 99.4 1.9E-14 6.5E-19 137.4 -3.7 135 446-591 181-315 (328)
71 3un9_A NLR family member X1; l 99.3 1.4E-11 5E-16 118.8 15.9 191 343-541 71-285 (372)
72 3oja_A Leucine-rich immune mol 99.3 9.4E-14 3.2E-18 140.1 0.7 171 242-429 99-269 (487)
73 2z66_A Variable lymphocyte rec 99.3 5.9E-15 2E-19 140.1 -8.0 59 138-199 28-88 (306)
74 1ozn_A Reticulon 4 receptor; N 99.3 7E-14 2.4E-18 131.1 -1.2 207 344-564 32-238 (285)
75 3oja_A Leucine-rich immune mol 99.3 6.5E-14 2.2E-18 141.2 -1.5 59 266-329 33-91 (487)
76 1wwl_A Monocyte differentiatio 99.3 2.6E-14 8.9E-19 135.7 -4.7 33 448-483 274-306 (312)
77 1wwl_A Monocyte differentiatio 99.3 3E-14 1E-18 135.3 -5.3 259 317-592 42-311 (312)
78 1ogq_A PGIP-2, polygalacturona 99.3 3.9E-15 1.3E-19 141.3 -11.4 60 138-199 50-111 (313)
79 3zyj_A Leucine-rich repeat-con 99.3 1.6E-13 5.6E-18 137.1 -1.0 62 216-280 64-125 (440)
80 3zyi_A Leucine-rich repeat-con 99.3 1.9E-13 6.7E-18 137.1 -0.5 62 216-280 75-136 (452)
81 1ogq_A PGIP-2, polygalacturona 99.3 7.1E-15 2.4E-19 139.5 -10.5 87 446-539 219-305 (313)
82 4fcg_A Uncharacterized protein 99.3 1.2E-13 4E-18 131.9 -2.6 60 216-280 81-140 (328)
83 1ozn_A Reticulon 4 receptor; N 99.3 2.6E-13 8.9E-18 127.2 -0.9 206 317-536 31-236 (285)
84 1h6u_A Internalin H; cell adhe 99.3 2E-11 6.9E-16 115.3 11.0 187 137-379 40-226 (308)
85 4glp_A Monocyte differentiatio 99.3 4E-13 1.4E-17 127.4 -1.0 160 420-592 143-309 (310)
86 4glp_A Monocyte differentiatio 99.2 1.9E-12 6.4E-17 122.8 1.8 161 138-301 64-233 (310)
87 4ezg_A Putative uncharacterize 99.2 9.1E-12 3.1E-16 109.2 5.1 131 447-591 65-195 (197)
88 1h6t_A Internalin B; cell adhe 99.2 6.7E-11 2.3E-15 110.6 9.8 128 446-592 88-215 (291)
89 2z62_A TOLL-like receptor 4, v 99.1 6.8E-13 2.3E-17 123.7 -5.4 203 344-562 28-235 (276)
90 3rfs_A Internalin B, repeat mo 99.1 3.6E-12 1.2E-16 118.2 -1.8 56 343-406 40-95 (272)
91 4ezg_A Putative uncharacterize 99.1 6.4E-11 2.2E-15 103.8 5.5 129 420-562 64-192 (197)
92 3rfs_A Internalin B, repeat mo 99.1 1.4E-11 4.7E-16 114.3 1.2 197 369-591 40-236 (272)
93 1fs1_A SKP2 F-BOX, cyclin A/CD 99.1 1E-10 3.4E-15 76.6 4.1 43 9-52 10-52 (53)
94 2ra8_A Uncharacterized protein 99.1 5.8E-10 2E-14 106.6 11.0 86 498-588 251-341 (362)
95 1m9s_A Internalin B; cell inva 99.1 2.6E-10 8.8E-15 117.3 9.0 82 498-591 130-211 (605)
96 2ra8_A Uncharacterized protein 99.0 1.8E-09 6.1E-14 103.2 13.3 160 392-562 168-341 (362)
97 2o6q_A Variable lymphocyte rec 99.0 1.5E-11 5.3E-16 113.9 -2.3 180 370-562 37-216 (270)
98 1h6t_A Internalin B; cell adhe 99.0 7.2E-10 2.4E-14 103.6 8.7 101 240-354 110-210 (291)
99 2z62_A TOLL-like receptor 4, v 99.0 2E-11 6.7E-16 113.7 -2.7 40 240-280 50-89 (276)
100 2je0_A Acidic leucine-rich nuc 99.0 5.8E-10 2E-14 92.7 6.3 130 422-559 17-148 (149)
101 2o6q_A Variable lymphocyte rec 99.0 2.7E-11 9.3E-16 112.2 -2.2 200 319-536 17-216 (270)
102 1io0_A Tropomodulin; LRR prote 99.0 9.6E-09 3.3E-13 88.4 13.3 121 439-562 27-162 (185)
103 1p9a_G Platelet glycoprotein I 98.9 3.2E-11 1.1E-15 112.7 -3.1 201 342-564 8-208 (290)
104 2xwt_C Thyrotropin receptor; s 98.9 1.2E-11 4.2E-16 112.3 -6.4 11 319-329 32-42 (239)
105 1m9s_A Internalin B; cell inva 98.9 2.3E-09 7.9E-14 110.2 9.0 167 137-329 42-208 (605)
106 2ell_A Acidic leucine-rich nuc 98.9 6.2E-10 2.1E-14 94.7 3.0 133 422-562 24-158 (168)
107 1io0_A Tropomodulin; LRR prote 98.9 4.4E-08 1.5E-12 84.2 14.0 125 414-542 28-167 (185)
108 1p9a_G Platelet glycoprotein I 98.9 5.5E-10 1.9E-14 104.2 2.0 129 137-280 9-137 (290)
109 1xeu_A Internalin C; cellular 98.8 3.3E-09 1.1E-13 97.4 6.5 122 394-535 39-160 (263)
110 2je0_A Acidic leucine-rich nuc 98.8 1.5E-09 5.3E-14 90.1 3.5 58 138-199 17-74 (149)
111 2xwt_C Thyrotropin receptor; s 98.8 1.1E-10 3.7E-15 106.0 -4.3 82 447-536 154-237 (239)
112 2ell_A Acidic leucine-rich nuc 98.8 6.3E-10 2.2E-14 94.7 -0.6 139 446-592 22-162 (168)
113 3m19_A Variable lymphocyte rec 98.8 4.8E-10 1.7E-14 102.5 -1.5 178 370-563 14-191 (251)
114 3m19_A Variable lymphocyte rec 98.7 2.1E-09 7.3E-14 98.2 0.8 17 161-177 56-72 (251)
115 1xeu_A Internalin C; cellular 98.7 2.3E-08 7.8E-13 91.8 7.2 125 137-281 40-164 (263)
116 2o6s_A Variable lymphocyte rec 98.6 2.7E-09 9.4E-14 94.4 -3.1 82 396-482 28-109 (208)
117 1dce_A Protein (RAB geranylger 98.5 4.1E-09 1.4E-13 107.7 -2.5 36 137-175 348-383 (567)
118 1ds9_A Outer arm dynein; leuci 98.5 6.7E-09 2.3E-13 90.9 -1.3 134 447-593 47-188 (198)
119 1a9n_A U2A', U2A'; complex (nu 98.5 5.6E-08 1.9E-12 83.1 4.3 108 448-562 42-151 (176)
120 1a9n_A U2A', U2A'; complex (nu 98.5 1.3E-08 4.3E-13 87.2 0.0 137 446-592 17-155 (176)
121 4ay9_X Follicle-stimulating ho 98.5 1.2E-09 3.9E-14 105.4 -7.5 13 317-329 103-115 (350)
122 2v9t_B SLIT homolog 2 protein 98.5 1E-08 3.5E-13 91.3 -1.6 133 422-563 32-164 (220)
123 3e6j_A Variable lymphocyte rec 98.5 1.7E-08 5.7E-13 90.6 -0.3 134 421-564 39-172 (229)
124 2xot_A Amphoterin-induced prot 98.5 1.1E-08 3.6E-13 99.1 -1.7 162 396-566 39-204 (361)
125 1pgv_A TMD-1, tropomodulin TMD 98.4 1.6E-06 5.4E-11 73.6 11.2 120 439-560 32-166 (197)
126 2v70_A SLIT-2, SLIT homolog 2 98.4 1.3E-08 4.5E-13 90.6 -1.9 59 139-199 33-91 (220)
127 2o6s_A Variable lymphocyte rec 98.4 2.1E-08 7.3E-13 88.6 -1.0 153 421-591 27-179 (208)
128 3sb4_A Hypothetical leucine ri 98.4 1.8E-08 6.1E-13 96.2 -1.6 127 369-506 201-328 (329)
129 2v70_A SLIT-2, SLIT homolog 2 98.4 2E-08 6.8E-13 89.4 -1.5 132 396-535 32-163 (220)
130 3cvr_A Invasion plasmid antige 98.4 2.2E-08 7.4E-13 101.8 -1.5 185 344-567 59-245 (571)
131 3e6j_A Variable lymphocyte rec 98.4 4.7E-08 1.6E-12 87.6 0.5 59 138-199 40-98 (229)
132 3cvr_A Invasion plasmid antige 98.4 1.8E-07 6.1E-12 95.1 4.4 179 138-353 59-239 (571)
133 2xot_A Amphoterin-induced prot 98.4 5.5E-08 1.9E-12 94.0 0.3 41 239-280 109-149 (361)
134 1ds9_A Outer arm dynein; leuci 98.3 1.4E-07 4.7E-12 82.5 2.6 113 156-279 40-152 (198)
135 1pgv_A TMD-1, tropomodulin TMD 98.3 7.6E-06 2.6E-10 69.5 12.9 122 412-535 31-167 (197)
136 4ay9_X Follicle-stimulating ho 98.3 6.1E-09 2.1E-13 100.3 -7.3 79 448-534 177-255 (350)
137 1dce_A Protein (RAB geranylger 98.3 4.8E-08 1.7E-12 99.8 -1.7 125 216-351 441-567 (567)
138 2v9t_B SLIT homolog 2 protein 98.3 8.1E-08 2.8E-12 85.4 -0.4 57 139-198 33-89 (220)
139 3sb4_A Hypothetical leucine ri 98.2 2.1E-07 7.1E-12 88.7 -0.2 205 369-591 24-311 (329)
140 3l2o_B F-box only protein 4; s 98.1 5.7E-07 2E-11 79.9 2.1 40 9-49 6-45 (312)
141 2e31_A FBS1, F-box only protei 98.1 2.1E-06 7.3E-11 77.5 3.8 40 9-49 52-92 (297)
142 4b8c_D Glucose-repressible alc 97.9 1.1E-06 3.8E-11 92.8 -1.7 106 393-509 221-326 (727)
143 2wfh_A SLIT homolog 2 protein 97.8 6.4E-06 2.2E-10 71.2 2.1 34 396-432 31-64 (193)
144 1w8a_A SLIT protein; signaling 97.8 2.2E-06 7.6E-11 74.2 -1.0 82 397-482 30-111 (192)
145 2o6r_A Variable lymphocyte rec 97.7 3.6E-06 1.2E-10 71.8 -0.3 35 447-482 51-85 (177)
146 1w8a_A SLIT protein; signaling 97.7 3.7E-06 1.3E-10 72.8 -0.4 39 240-279 52-90 (192)
147 2wfh_A SLIT homolog 2 protein 97.7 9.6E-06 3.3E-10 70.1 2.0 40 240-280 52-91 (193)
148 2o6r_A Variable lymphocyte rec 97.7 8.3E-06 2.8E-10 69.6 1.6 39 240-279 98-136 (177)
149 3v7d_B Cell division control p 97.6 2.1E-05 7.1E-10 79.0 2.1 45 4-50 12-57 (464)
150 1p22_A F-BOX/WD-repeat protein 97.5 2E-05 7E-10 78.4 0.8 47 3-51 7-57 (435)
151 4b8c_D Glucose-repressible alc 97.4 4.5E-05 1.5E-09 80.6 2.4 116 157-284 217-333 (727)
152 2ovr_B FBW7, F-BOX/WD repeat p 97.4 8.4E-05 2.9E-09 74.1 3.8 44 4-49 16-59 (445)
153 4fs7_A Uncharacterized protein 97.1 2.1E-06 7.2E-11 84.0 -11.1 54 216-274 71-124 (394)
154 3rw6_A Nuclear RNA export fact 97.0 0.002 6.9E-08 57.9 8.8 84 419-505 167-257 (267)
155 3rw6_A Nuclear RNA export fact 96.9 0.0015 5.1E-08 58.8 7.0 63 216-280 170-233 (267)
156 2r9u_A Variable lymphocyte rec 96.9 0.0002 7E-09 60.4 1.0 34 448-482 33-66 (174)
157 3g39_A Variable lymphocyte rec 96.9 0.00025 8.6E-09 59.7 1.6 34 164-198 30-63 (170)
158 3g39_A Variable lymphocyte rec 96.9 0.00021 7.1E-09 60.2 1.0 34 448-482 30-63 (170)
159 2r9u_A Variable lymphocyte rec 96.9 0.00027 9.1E-09 59.7 1.6 35 164-199 33-67 (174)
160 4fdw_A Leucine rich hypothetic 96.8 2.9E-05 9.9E-10 75.6 -5.5 216 345-588 158-381 (401)
161 4fs7_A Uncharacterized protein 96.7 1.9E-05 6.5E-10 77.2 -7.7 10 163-172 70-79 (394)
162 4fdw_A Leucine rich hypothetic 96.4 9.5E-05 3.3E-09 71.9 -5.1 60 446-508 269-332 (401)
163 2ifg_A High affinity nerve gro 96.1 0.0007 2.4E-08 64.8 -1.1 88 444-536 27-114 (347)
164 2ifg_A High affinity nerve gro 95.8 0.0023 7.8E-08 61.1 1.1 88 418-510 27-114 (347)
165 4gt6_A Cell surface protein; l 92.4 0.02 6.7E-07 55.6 -0.6 11 420-430 263-273 (394)
166 4gt6_A Cell surface protein; l 84.9 0.28 9.4E-06 47.5 1.4 33 139-174 65-97 (394)
167 4h09_A Hypothetical leucine ri 80.2 0.078 2.7E-06 51.1 -4.6 125 420-560 215-342 (379)
168 4h09_A Hypothetical leucine ri 74.9 0.33 1.1E-05 46.6 -1.9 136 394-546 215-352 (379)
169 3rfe_A Platelet glycoprotein I 59.3 6 0.00021 30.7 2.9 13 498-510 54-66 (130)
170 3rfe_A Platelet glycoprotein I 53.4 6.7 0.00023 30.4 2.2 12 243-254 32-43 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.6e-43 Score=369.92 Aligned_cols=519 Identities=22% Similarity=0.338 Sum_probs=275.8
Q ss_pred CCCcccCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccceeeccCCCchHHHHHHHhhcCCceEEEecccccc
Q 007312 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSV 83 (608)
Q Consensus 4 ~~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~ 83 (608)
+|.+ ++||+|||.+||+||+..+|++++++|||+|+++....+..+.+...+... ...+..+|++++.+++.+....
T Consensus 3 ~d~~-~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~ 79 (594)
T 2p1m_B 3 KRIA-LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS--PATVIRRFPKVRSVELKGKPHF 79 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC--HHHHHHHCTTCCEEEEECSCGG
T ss_pred ccch-hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC--HHHHHhhCCCceEEeccCCCch
Confidence 4666 589999999999999977999999999999999966666666665554321 2356788999999998875432
Q ss_pred ccccccCccccccccchhhhhhhhcccCCCCcccccccccccCcccHHHHHhcCCCCceeeccccCCCChhhHHHHHHhC
Q 007312 84 SIPVQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKC 163 (608)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 163 (608)
... .+. +..+ .......+..+...+++|++|+++++ .+....+..+...+
T Consensus 80 ~~~----------------~l~--~~~~-----------~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~ 129 (594)
T 2p1m_B 80 ADF----------------NLV--PDGW-----------GGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSF 129 (594)
T ss_dssp GGG----------------TCS--CTTS-----------CCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHC
T ss_pred hhc----------------ccc--cccc-----------cchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhC
Confidence 100 000 0000 00233456666777888888888876 46666666666678
Q ss_pred CCccEEEccCC-ccChHHHHHHHhhCCCCceeecCCCCCCCchH---HHHHHhhcCCCccEEecCCCC-CcChHHHHHHH
Q 007312 164 IHLKSLDLQGC-YVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTG---LVDLAHGCGKSLKSLGIAACV-KITDVSLEAVG 238 (608)
Q Consensus 164 ~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~ 238 (608)
++|++|++++| .+++..+..+...+++|++|+++++. +.+.+ +..+... .++|++|++++|. .+....+..+.
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~-~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDT-YTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTT-CCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhc-CCcCcEEEecccCCcCCHHHHHHHH
Confidence 88888888888 56666677777678888888888764 22211 2222112 2678888887764 35556666666
Q ss_pred hcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccC--CChHHHHH---HHhcCCCCcEEEeccccCCChHHHHHH
Q 007312 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN--VTDEALVA---VGNQCLSLELLALYSFQQFTDKGLHAV 313 (608)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~~~ 313 (608)
..+++|++|+++++. ...++......+++|+.|.++... +....+.. ....+++|+.|. +........+..+
T Consensus 208 ~~~~~L~~L~L~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls--~~~~~~~~~l~~~ 284 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS--GFWDAVPAYLPAV 284 (594)
T ss_dssp HHCTTCCEEECCTTS-CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE--CCBTCCGGGGGGG
T ss_pred HhCCCCcEEecCCCC-cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc--CCcccchhhHHHH
Confidence 667778888777662 222255555567777777765332 22222211 123355555552 1111222222222
Q ss_pred hhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHh
Q 007312 314 GKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGR 393 (608)
Q Consensus 314 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 393 (608)
...+++|++|+++++. +++..+..+...+++|++|++.++ +.+.++..+...+++|++|++..|....
T Consensus 285 ~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g--------- 352 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFV--------- 352 (594)
T ss_dssp HHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTC---------
T ss_pred HHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccc---------
Confidence 2234555555555554 444444444444455555555543 3333444444444555555441100000
Q ss_pred cCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecc-----cCCcCC----hH
Q 007312 394 GCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLR-----FCDRVG----DE 464 (608)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~~~----~~ 464 (608)
..++..+++.++..+..++++|++|.+ +|..+++.++..+...+++|+.|+++ +|+.++ +.
T Consensus 353 ---------~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 353 ---------MEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp ---------SSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred ---------cccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 022233444444444444455555533 22344444444444444555555554 333344 22
Q ss_pred HHHhh-hcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHH
Q 007312 465 ALISI-GQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGL 543 (608)
Q Consensus 465 ~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~ 543 (608)
++..+ ..+++|++|++++ .+++.++..+...+++|+.|++++| .+++.++..+..++++|+.|++++|+ +++.++
T Consensus 423 ~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~ 498 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKAL 498 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHH
T ss_pred HHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHH
Confidence 32222 2334455555543 3455555555444555555555555 35555555554445555555555554 355555
Q ss_pred HHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecce
Q 007312 544 SHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKW 587 (608)
Q Consensus 544 ~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~ 587 (608)
..+...+++|+.|++++|+. +..++..+...+|+|+...+..+
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHHHHhCCCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecCC
Confidence 44444455555555555543 44555544455555554444433
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=5.6e-44 Score=374.62 Aligned_cols=507 Identities=19% Similarity=0.278 Sum_probs=273.2
Q ss_pred cCCChHHHHHHHhhc-CChhhhhhhhhccHhHHHhhhhcccceeeccCCCchHHHHHHHhhcCCceEEEecccccccccc
Q 007312 9 TCLPDEVILEIFRHL-DSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRFANVKSIHIDERLSVSIPV 87 (608)
Q Consensus 9 ~~LP~eil~~If~~L-~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~~~ 87 (608)
++||+|||.+||+|| + .+|+.++++|||+|+++....+..+.+...+. .....+..++++++.+++.+.......
T Consensus 14 ~~LPdeil~~I~~~L~~-~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~- 89 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITD-PKDRDSASLVCRRWFKIDSETREHVTMALCYT--ATPDRLSRRFPNLRSLKLKGKPRAAMF- 89 (592)
T ss_dssp CCCGGGTHHHHHTTCCC-HHHHHHHTTSCHHHHHHHHHHCCEEEESCGGG--SCHHHHHHHCTTCSEEEEECSCGGGGG-
T ss_pred CCCCHHHHHHHHHhcCC-HHHHHHHHHHhHHHHHhhhccccEEEEeeccc--cChHHHHHhCCCCeEEEecCCcchhhc-
Confidence 379999999999999 7 99999999999999999766655555544322 123456677888888888764332100
Q ss_pred ccCccccccccchhhhhhhhcccCCCCcccccccccccCcccHHHHHhcCCCCceeeccccCCCChhhHHHHHHhCCC-c
Q 007312 88 QHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIH-L 166 (608)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L 166 (608)
+.. +. .........+..+...+++|++|+++++ .+....+..+...+++ |
T Consensus 90 --~~~---------------~~-----------~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L 140 (592)
T 3ogk_B 90 --NLI---------------PE-----------NWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDL 140 (592)
T ss_dssp --TCS---------------CT-----------TSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGC
T ss_pred --ccc---------------cc-----------cccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccC
Confidence 000 00 0000122333444444555555555544 3333333333322333 5
Q ss_pred cEEEccCCc-cChHHHHHHHhhCCCCceeecCCCCCCCch---HHHHHHhhcCCCccEEecCCCCC--cChHHHHHHHhc
Q 007312 167 KSLDLQGCY-VGDQGLAAVGKVCNQLEDLNLRFCEGLTDT---GLVDLAHGCGKSLKSLGIAACVK--ITDVSLEAVGSH 240 (608)
Q Consensus 167 ~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~ 240 (608)
++|++++|. +.+..+..+...+++|++|+++++. +.+. .+..+...+ ++|++|+++++.. +....+..+...
T Consensus 141 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 141 ETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHN-TSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHC-CCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcC-CCccEEEeeccCCCccCHHHHHHHHhh
Confidence 555555543 3334444444445555555555442 1111 122222222 4455554444311 122333333444
Q ss_pred CCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCCh-HHHHHHhhcCCC
Q 007312 241 CKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTD-KGLHAVGKGCKK 319 (608)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~ 319 (608)
+++|++|+++++.+.. +...+.. +++|++|.+..+..... .........+++
T Consensus 219 ~~~L~~L~L~~~~~~~--l~~~~~~-------------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE--LVGFFKA-------------------------AANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CTTCCEEECSSCBGGG--GHHHHHH-------------------------CTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCCCcEEeccCccHHH--HHHHHhh-------------------------hhHHHhhcccccccccchHHHHHHhhcccc
Confidence 4444444444443322 2222333 44444444442111100 000011122455
Q ss_pred CCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCc
Q 007312 320 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQ 399 (608)
Q Consensus 320 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 399 (608)
|+.|.+.+.. ...+......+++|++|++++|. +....+..+...+++|++|++. +.+.+..+..+...+++|+
T Consensus 272 L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 272 LCRLGLSYMG---PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCEEEETTCC---TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCC
T ss_pred ccccCccccc---hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCCCCC
Confidence 6666555432 22233333445566666666644 5555554555556666666665 2344455555555666666
Q ss_pred EEEecc----------CCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEeccc---CCcCChH--
Q 007312 400 ALHLVD----------CSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRF---CDRVGDE-- 464 (608)
Q Consensus 400 ~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~~~~~-- 464 (608)
+|++++ |..+++.++..+...+++|++|++ +|..+++..+..+...+++|++|++++ |+.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 666663 556666666666666666666666 334566666666666666677776652 3445431
Q ss_pred --HHHh-hhcCCCccEEEecCCc-ccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccH
Q 007312 465 --ALIS-IGQGCSLQHLNVSGCH-QIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITD 540 (608)
Q Consensus 465 --~~~~-l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~ 540 (608)
++.. +..+++|++|+++.|. .+++.++..+...+++|++|++++| .+++.++..+..++++|+.|++++|+ +++
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 502 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSE 502 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcH
Confidence 2222 3345567777776543 3566666666666777777777776 46666666666667777777777765 666
Q ss_pred HHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecce
Q 007312 541 VGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKW 587 (608)
Q Consensus 541 ~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~ 587 (608)
.++..+...+++|++|++++|+ ++..++..+...+|.+....+..+
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 6666666667777777777766 666566555566666666655543
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=7e-35 Score=305.58 Aligned_cols=403 Identities=21% Similarity=0.332 Sum_probs=312.1
Q ss_pred HHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhh
Q 007312 179 QGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG 258 (608)
Q Consensus 179 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (608)
..+..+...+++|++|+++++ .+.+.....+...+..+|++|++++|..+...++..+...|++|++|+++++.+.+.+
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred HHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc
Confidence 344555555666666666665 3444444444443323377777777765666666777777888888888888765444
Q ss_pred ---HHHHHhcCCccceeeecccCCC---hHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCC-
Q 007312 259 ---VHAVAQGCPLLRVLKLQCINVT---DEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFL- 331 (608)
Q Consensus 259 ---~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 331 (608)
+..+...+++|++|+++++.+. ...+..+...+++|++|++.++. +.. +......+++|++|.+......
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~--l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILE--LVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG--GHHHHHHCTTCCEEEECBCCCCT
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHH--HHHHHhhhhHHHhhccccccccc
Confidence 5556667888888888877765 56677777779999999998743 222 3455556899999999853211
Q ss_pred CHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCCh
Q 007312 332 SDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGD 411 (608)
Q Consensus 332 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (608)
...........+++|+.|.+.++ ....+..+...+++|++|++++|. ++...+..+...+++|+.|++.+ .+.+
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~ 331 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGD 331 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHH
T ss_pred chHHHHHHhhccccccccCcccc---chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCH
Confidence 11111112245679999999873 333455566678999999999965 88888777778999999999995 4777
Q ss_pred HHHHHHHhcCccCcEEeccc----------ccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhc-CCCccEEEe
Q 007312 412 DAICSIAEGCQNLKKLHIRR----------CYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ-GCSLQHLNV 480 (608)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l 480 (608)
.++..+...+++|++|++++ |..+++.++..+...+++|++|++ +|+.+++..+..+.. +++|++|++
T Consensus 332 ~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEE
Confidence 88888888899999999995 778999999998889999999999 557799999888887 778999999
Q ss_pred c---CCcccCH----HHHHHHHhhCCCCcEEeecCCC-CCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCc
Q 007312 481 S---GCHQIGD----AGIMAIAKGCPELNYLDVSVLQ-NLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRM 552 (608)
Q Consensus 481 ~---~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 552 (608)
+ .|+.+++ .++..+...+++|++|+++.|. .+++.++..+...+++|+.|++++|. +++.++..+...+++
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~ 489 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPN 489 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTT
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcc
Confidence 7 3567775 5788888889999999998764 38999999998889999999999975 999999999889999
Q ss_pred cCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeeccee
Q 007312 553 LESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERTK 594 (608)
Q Consensus 553 L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 594 (608)
|++|++++|+ ++..++..+...+++|+.|++++|+++..+.
T Consensus 490 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~ 530 (592)
T 3ogk_B 490 LQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQ 530 (592)
T ss_dssp CCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCT
T ss_pred cCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHH
Confidence 9999999998 8888888888899999999999999998743
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=6.3e-34 Score=298.59 Aligned_cols=399 Identities=23% Similarity=0.385 Sum_probs=301.8
Q ss_pred HHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhh--
Q 007312 181 LAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG-- 258 (608)
Q Consensus 181 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-- 258 (608)
+..+...+++|++|+++++. +.+..+..+...+ ++|++|++.+|..++..++..+...+++|++|+++++.+++.+
T Consensus 97 l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~ 174 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH 174 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred HHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH
Confidence 34444456666666666552 4444444444333 6677777766655666566666667777777777777655433
Q ss_pred -HHHHHhcCCccceeeecccC--CChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCC-CCHH
Q 007312 259 -VHAVAQGCPLLRVLKLQCIN--VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYF-LSDM 334 (608)
Q Consensus 259 -~~~~~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~ 334 (608)
+..+...+++|++|+++++. +....+..+...+++|++|++.++..+. .+..+...+++|++|.+..+.. +...
T Consensus 175 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 175 WLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--HHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred HHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--HHHHHHhcCCcceEcccccccCccchh
Confidence 23333456788888887664 6667777776778888888888764332 3566666688999998876542 2222
Q ss_pred ---HHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCCh
Q 007312 335 ---GLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGD 411 (608)
Q Consensus 335 ---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 411 (608)
.+......+++|+.|. +........+..+...+++|++|++++|. ++...+..+...+++|+.|++.+| +++
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEE--CCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hHHHHHHHHhcCCCccccc--CCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 2233346788999883 22334455555555567999999999966 888877777788999999999987 667
Q ss_pred HHHHHHHhcCccCcEEec--------ccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhc-CCCccEEEec-
Q 007312 412 DAICSIAEGCQNLKKLHI--------RRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ-GCSLQHLNVS- 481 (608)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~- 481 (608)
.++..+...+++|++|++ .++..+++.++..+...+++|++|.+ +|+.+++..+..+.. +++|++|+++
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeec
Confidence 778888888999999999 34567888899888888999999965 456789888888874 7789999999
Q ss_pred ----CCcccC----HHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCcc
Q 007312 482 ----GCHQIG----DAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRML 553 (608)
Q Consensus 482 ----~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 553 (608)
+|+.++ +.++..+...+++|+.|++++ .+++.++..+...+++|+.|++++|. +++.++..+...+++|
T Consensus 407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSL 483 (594)
T ss_dssp SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTC
T ss_pred ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCc
Confidence 677888 788888888999999999977 69999999988889999999999986 8999999988889999
Q ss_pred CeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecce
Q 007312 554 ESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERT 593 (608)
Q Consensus 554 ~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 593 (608)
++|++++|+. +..++..+...+++|+.|++++|+++.++
T Consensus 484 ~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 484 RKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred CEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 9999999986 88888877788999999999999997654
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.8e-28 Score=247.15 Aligned_cols=411 Identities=20% Similarity=0.301 Sum_probs=219.8
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHH---hhCCCCceeecCCCCCCCchHHHHHHhhc
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVG---KVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (608)
++|++|+++++ .+.......++..+++|++|++++|.+++.....+. ..+++|++|+++++ .+.+.+...+....
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence 45666666544 444545555555666666666666666554333322 22455666666554 23333333333322
Q ss_pred CC---CccEEecCCCCCcChH---HHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHH
Q 007312 215 GK---SLKSLGIAACVKITDV---SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVG 288 (608)
Q Consensus 215 ~~---~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 288 (608)
.. +|++|++++| .+++. .+......+++|++|++++|.+++.+...+...+ .
T Consensus 81 ~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---------------------~ 138 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL---------------------L 138 (461)
T ss_dssp CSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH---------------------T
T ss_pred hhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH---------------------h
Confidence 10 4555555554 33322 1222234445555555555554444333332210 0
Q ss_pred hcCCCCcEEEeccccCCChHHH---HHHhhcCCCCCeEecCCCCCCCHHHHHHHHh----cCCCCcEEEecCCCCCChhH
Q 007312 289 NQCLSLELLALYSFQQFTDKGL---HAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT----GCKELTHLEINGCHNIGTMG 361 (608)
Q Consensus 289 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~ 361 (608)
...++|++|++.++ .++.... ......+++|++|+++++. +++.+...+.. ..++|++|+++++. +...+
T Consensus 139 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~ 215 (461)
T 1z7x_W 139 DPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDN 215 (461)
T ss_dssp STTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTH
T ss_pred cCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHH
Confidence 11234555555442 2332221 2222335666666666655 44444333332 24467777776643 33333
Q ss_pred H---HHHHhcCcccceEecccccccChHHHHHHHh----cCCCCcEEEeccCCCCChHHH---HHHHhcCccCcEEeccc
Q 007312 362 L---ESIGKFCRNLTELALLYCQRIGNLALLEVGR----GCKSLQALHLVDCSSIGDDAI---CSIAEGCQNLKKLHIRR 431 (608)
Q Consensus 362 ~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~ 431 (608)
. ......+++|++|++++ +.+.+.+...+.. .+++|++|++++| .++..+. ...+..+++|++|++++
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGS-NKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCccEEeccC-CcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 2 22233457777777776 3555554433322 4677777777775 4665543 33334577777777777
Q ss_pred ccccChHHHHHHHhc----CCCCcEEecccCCcCChHHH----HhhhcCCCccEEEecCCcccCHHHHHHHHhh----CC
Q 007312 432 CYKIGNNGIVAVGEH----CNSLTELSLRFCDRVGDEAL----ISIGQGCSLQHLNVSGCHQIGDAGIMAIAKG----CP 499 (608)
Q Consensus 432 ~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~ 499 (608)
+ .+++.+...+... .++|++|++++|. +++.+. ..+...++|++|++++| .+++.+...+... .+
T Consensus 294 n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~ 370 (461)
T 1z7x_W 294 N-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGS 370 (461)
T ss_dssp C-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTC
T ss_pred C-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCC
Confidence 6 4555554444432 2578888887765 554432 33445567888888775 5666666555432 56
Q ss_pred CCcEEeecCCCCCChHHHHHHh---ccCCCcceeecccccCccHHHHHHHHHcCC----ccCeeecccCCCCC--HHHHH
Q 007312 500 ELNYLDVSVLQNLGDQAMVELG---KGCPLLKDVVLSHCRQITDVGLSHLVKNCR----MLESCHMVYCPGIT--AAGVA 570 (608)
Q Consensus 500 ~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~----~L~~L~l~~c~~~~--~~~~~ 570 (608)
+|++|++++| .+++.+...+. ..+++|++|++++|+ +++.++..+.+.++ +|+.|.+.++..-. ...+.
T Consensus 371 ~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~ 448 (461)
T 1z7x_W 371 VLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448 (461)
T ss_dssp CCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHH
T ss_pred ceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHH
Confidence 7888888888 57775544443 246888888888864 77777777665443 47777776654322 23444
Q ss_pred HHHHcCCCCcEE
Q 007312 571 TVVSGCANIKKV 582 (608)
Q Consensus 571 ~~~~~~~~L~~l 582 (608)
.+.+..|+|+.+
T Consensus 449 ~l~~~~p~l~i~ 460 (461)
T 1z7x_W 449 ALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHCTTSEEE
T ss_pred HHhccCCCcEee
Confidence 555667777654
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.3e-28 Score=243.70 Aligned_cols=403 Identities=22% Similarity=0.253 Sum_probs=251.1
Q ss_pred ccccccCcccHHHHHhcCCCCceeeccccCCCChh---hHHHHHHhCCCccEEEccCCccChHHHHHHHhhCC----CCc
Q 007312 120 SESYYLSDSGLNALADGFSKLEKLSLIWCSNISSL---GLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCN----QLE 192 (608)
Q Consensus 120 l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~----~L~ 192 (608)
+....+++..+..+...+++|++|++.+| .+... .+...+..+++|++|++++|.+.+..+..+...++ +|+
T Consensus 10 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~ 88 (461)
T 1z7x_W 10 IQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88 (461)
T ss_dssp EESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCC
T ss_pred hhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCcee
Confidence 33445666677777778999999999988 45544 45667778999999999999998888888887777 799
Q ss_pred eeecCCCCCCCchHHHHHHh--hcCCCccEEecCCCCCcChHHHHHHHhc----CCCCCEEECCCCccchhhHHH---HH
Q 007312 193 DLNLRFCEGLTDTGLVDLAH--GCGKSLKSLGIAACVKITDVSLEAVGSH----CKSLETLSLDSEFIHNKGVHA---VA 263 (608)
Q Consensus 193 ~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~---~~ 263 (608)
+|+++++ .+.+.++..+.. ...++|++|+++++ .+.+.++..+... .++|++|++++|.++..+... .+
T Consensus 89 ~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 89 KLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp EEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred EEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 9999998 466554433332 23489999999998 5776666555443 467999999999888766433 33
Q ss_pred hcCCccceeeecccCCChHHHHHHHh----cCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHH
Q 007312 264 QGCPLLRVLKLQCINVTDEALVAVGN----QCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAI 339 (608)
Q Consensus 264 ~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 339 (608)
..+++|++|+++++.+.+..+..+.. ..++|++|+++++ .++..+... +...
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~-----------------------l~~~ 222 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRD-----------------------LCGI 222 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHH-----------------------HHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHH-----------------------HHHH
Confidence 45678888888877776655544433 2335555555542 232222111 1222
Q ss_pred HhcCCCCcEEEecCCCCCChhHHHHHHh----cCcccceEecccccccChHHH---HHHHhcCCCCcEEEeccCCCCChH
Q 007312 340 ATGCKELTHLEINGCHNIGTMGLESIGK----FCRNLTELALLYCQRIGNLAL---LEVGRGCKSLQALHLVDCSSIGDD 412 (608)
Q Consensus 340 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~ 412 (608)
...+++|++|+++++ .+...++..+.. .+++|++|++++ +.++..+. ......+++|++|+++++ .+++.
T Consensus 223 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~ 299 (461)
T 1z7x_W 223 VASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDE 299 (461)
T ss_dssp HHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHH
T ss_pred HHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcC-CCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchH
Confidence 223445555555442 233333332221 245566666655 24444432 222334566666666664 34444
Q ss_pred HHHHHHhc----CccCcEEecccccccChHHH---HHHHhcCCCCcEEecccCCcCChHHHHhhhc-----CCCccEEEe
Q 007312 413 AICSIAEG----CQNLKKLHIRRCYKIGNNGI---VAVGEHCNSLTELSLRFCDRVGDEALISIGQ-----GCSLQHLNV 480 (608)
Q Consensus 413 ~~~~~~~~----~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l 480 (608)
+...+... .++|++|++++| .++..+. ......+++|++|++++| .+++.++..+.. .++|++|++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L 377 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWL 377 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEEC
Confidence 44333332 257777777776 3544433 333345678888888875 466666655543 457888888
Q ss_pred cCCcccCHHHHHHHH---hhCCCCcEEeecCCCCCChHHHHHHhccC----CCcceeecccccC--ccHHHHHHHHHcCC
Q 007312 481 SGCHQIGDAGIMAIA---KGCPELNYLDVSVLQNLGDQAMVELGKGC----PLLKDVVLSHCRQ--ITDVGLSHLVKNCR 551 (608)
Q Consensus 481 ~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~c~~--l~~~~~~~~~~~~~ 551 (608)
++| .+++.++..+. ..+++|++|++++| .+++.++..+...+ ++|+.|.+.++.. .....+..+.+..|
T Consensus 378 ~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p 455 (461)
T 1z7x_W 378 ADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 455 (461)
T ss_dssp TTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCT
T ss_pred CCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCC
Confidence 885 57765544433 45788999999888 58888777665433 3588887776531 22334555655677
Q ss_pred ccCee
Q 007312 552 MLESC 556 (608)
Q Consensus 552 ~L~~L 556 (608)
+|+.+
T Consensus 456 ~l~i~ 460 (461)
T 1z7x_W 456 SLRVI 460 (461)
T ss_dssp TSEEE
T ss_pred CcEee
Confidence 77654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=4.5e-27 Score=227.51 Aligned_cols=284 Identities=20% Similarity=0.276 Sum_probs=156.3
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccceeeccCCCchHHHHHHHhhc--CCceEEEeccccccccc
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRIGASGSPDLFVKLLSRRF--ANVKSIHIDERLSVSIP 86 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~l~~l~~~~~~~~~~~ 86 (608)
++||+||+.+||+||+ .+|+.+++.|||+|++++..+..|..++..+.... .....++ ++++.+++.+.....
T Consensus 10 ~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~-- 84 (336)
T 2ast_B 10 DSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQ-- 84 (336)
T ss_dssp SSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECS--
T ss_pred hhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCC--HHHHHhhhhccceEEEcCCccccc--
Confidence 5899999999999999 99999999999999999766555555544322100 0111111 333433333211000
Q ss_pred cccCccccccccchhhhhhhhcccCCCCcccccccccccCcccHHHHHhcCCCCceeeccccCCCChhhHHHHHHhCCCc
Q 007312 87 VQHGRRRGDQSKLSALQLHYLTKKTGSEDGQFQSESYYLSDSGLNALADGFSKLEKLSLIWCSNISSLGLMSLAQKCIHL 166 (608)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 166 (608)
.... ...+++|++|+++++ .+....++..+..+++|
T Consensus 85 --------------------------------------~~~~-----~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L 120 (336)
T 2ast_B 85 --------------------------------------PLAE-----HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKL 120 (336)
T ss_dssp --------------------------------------CCCS-----CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCC
T ss_pred --------------------------------------cchh-----hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCC
Confidence 0000 002344555555443 23333344444444555
Q ss_pred cEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCE
Q 007312 167 KSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLET 246 (608)
Q Consensus 167 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 246 (608)
++|++++|.+.+..+..+.. + ++|++|++++|..+++..+......+++|++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~-~---------------------------~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAK-N---------------------------SNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTT-C---------------------------TTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CEEeCcCcccCHHHHHHHhc-C---------------------------CCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 55555544444444443333 4 4555555555544444444444455566666
Q ss_pred EECCCC-ccchhhHHHHHhcCC-ccceeeeccc--CCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCe
Q 007312 247 LSLDSE-FIHNKGVHAVAQGCP-LLRVLKLQCI--NVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKN 322 (608)
Q Consensus 247 L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~~--~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 322 (608)
|+++++ .+++.++......++ +|++|+++++ .+++..+......+++|++|++.++..+++..+..+.. +++|++
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-CCCCCE
Confidence 666555 555554455455555 6666666555 45545555555556677777776654455444444433 677777
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccc
Q 007312 323 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 373 (608)
Q Consensus 323 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 373 (608)
|++++|..+++.++..+ ..+++|++|++++| +++.++..+...++.|+
T Consensus 252 L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 252 LSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp EECTTCTTCCGGGGGGG-GGCTTCCEEECTTS--SCTTCHHHHHHHSTTSE
T ss_pred eeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc--cCHHHHHHHHhhCcceE
Confidence 77777755555544333 34778888888876 66666666654344443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.4e-28 Score=263.68 Aligned_cols=424 Identities=16% Similarity=0.163 Sum_probs=239.0
Q ss_pred cCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHH--HhhCCCCceeecCCCCCCCchHHHHHHhh
Q 007312 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAV--GKVCNQLEDLNLRFCEGLTDTGLVDLAHG 213 (608)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 213 (608)
.+++|++|+++++. +..........++++|++|++++|.+.......+ ...+++|++|+++++........ .
T Consensus 124 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-----~ 197 (768)
T 3rgz_A 124 SCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-----S 197 (768)
T ss_dssp GCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-----T
T ss_pred CCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-----c
Confidence 45677777776542 1111001111356677777777776654333331 23466777777776532111111 2
Q ss_pred cCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCC
Q 007312 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (608)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 293 (608)
..++|++|++++|. +.... +. ...+++|++|++++|.+...... .+..+++|+.|+++.+.+....... .+++
T Consensus 198 ~l~~L~~L~Ls~n~-l~~~~-~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~ 270 (768)
T 3rgz_A 198 RCVNLEFLDVSSNN-FSTGI-PF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKS 270 (768)
T ss_dssp TCTTCCEEECCSSC-CCSCC-CB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTT
T ss_pred cCCcCCEEECcCCc-CCCCC-cc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCC
Confidence 22677777777762 22211 11 35567777777777766544333 3345677777777766553211111 3567
Q ss_pred CcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccc
Q 007312 294 LELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLT 373 (608)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 373 (608)
|++|++.++. +.......+...+++|++|+++++.. .. .+......+++|++|+++++...+......+ ..+++|+
T Consensus 271 L~~L~L~~n~-l~~~ip~~~~~~~~~L~~L~Ls~n~l-~~-~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~ 346 (768)
T 3rgz_A 271 LQYLSLAENK-FTGEIPDFLSGACDTLTGLDLSGNHF-YG-AVPPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLK 346 (768)
T ss_dssp CCEEECCSSE-EEESCCCCSCTTCTTCSEEECCSSEE-EE-CCCGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCC
T ss_pred CCEEECcCCc-cCCccCHHHHhhcCcCCEEECcCCcC-CC-ccchHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCC
Confidence 7777776532 22111112222247777777777652 11 1112234567778887777532212212222 3467788
Q ss_pred eEecccccccChHHHHHHHhcCC-CCcEEEeccCCCCChHHHHHHH-hcCccCcEEecccccccChHHHHHHHhcCCCCc
Q 007312 374 ELALLYCQRIGNLALLEVGRGCK-SLQALHLVDCSSIGDDAICSIA-EGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLT 451 (608)
Q Consensus 374 ~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 451 (608)
+|+++++ .+.......+ ..++ +|+.|+++++. ++......+. ..+++|+.|++++|. +... +......+++|+
T Consensus 347 ~L~Ls~n-~l~~~~p~~l-~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~ 421 (768)
T 3rgz_A 347 VLDLSFN-EFSGELPESL-TNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNG-FTGK-IPPTLSNCSELV 421 (768)
T ss_dssp EEECCSS-EEEECCCTTH-HHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSE-EEEE-CCGGGGGCTTCC
T ss_pred EEeCcCC-ccCccccHHH-HhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCc-cccc-cCHHHhcCCCCC
Confidence 8887774 3321111111 1233 78888887752 2211111111 115678888888773 2211 112234678999
Q ss_pred EEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceee
Q 007312 452 ELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVV 531 (608)
Q Consensus 452 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 531 (608)
+|++++|. +.......+..+++|+.|++++|. ++.... ..+..+++|++|++++| .++...... ...+++|+.|+
T Consensus 422 ~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~ 496 (768)
T 3rgz_A 422 SLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNM-LEGEIP-QELMYVKTLETLILDFN-DLTGEIPSG-LSNCTNLNWIS 496 (768)
T ss_dssp EEECCSSE-EESCCCGGGGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEE
T ss_pred EEECcCCc-ccCcccHHHhcCCCCCEEECCCCc-ccCcCC-HHHcCCCCceEEEecCC-cccCcCCHH-HhcCCCCCEEE
Confidence 99999864 555556677788899999999864 442212 22346899999999998 455332222 23589999999
Q ss_pred cccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeee
Q 007312 532 LSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 590 (608)
Q Consensus 532 l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 590 (608)
+++|. ++......+ ..+++|++|++++|..... ++..+..+++|+.|++++|+++
T Consensus 497 L~~N~-l~~~~p~~~-~~l~~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 497 LSNNR-LTGEIPKWI-GRLENLAILKLSNNSFSGN--IPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSC-CCSCCCGGG-GGCTTCCEEECCSSCCEEE--CCGGGGGCTTCCEEECCSSEEE
T ss_pred ccCCc-cCCcCChHH-hcCCCCCEEECCCCcccCc--CCHHHcCCCCCCEEECCCCccC
Confidence 99975 654433334 3689999999999864322 2234578999999999999887
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=1.1e-27 Score=251.53 Aligned_cols=283 Identities=19% Similarity=0.159 Sum_probs=159.5
Q ss_pred CCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCc
Q 007312 291 CLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCR 370 (608)
Q Consensus 291 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 370 (608)
+++|++|++.++ .+.. +......+++|++|+++++.. .... ......+++|++|+++++....... ......++
T Consensus 277 l~~L~~L~l~~n-~l~~--lp~~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~ 350 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSANKF-ENLC-QISASNFPSLTHLSIKGNTKRLELG-TGCLENLE 350 (606)
T ss_dssp CTTCSEEECTTS-CCSC--CCSSCCSCTTCCEEECTTCCC-SBGG-GGCGGGCTTCSEEECCSCSSCCBCC-SSTTTTCT
T ss_pred ccCCCEEeccCC-ccCC--CChhhcccccCCEEECccCCc-CcCc-hhhhhccCcCCEEECCCCCcccccc-hhhhhccC
Confidence 456666666553 2221 111123356666666666542 2111 1122345667777776643221111 11122457
Q ss_pred ccceEecccccccChHH-HHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCC
Q 007312 371 NLTELALLYCQRIGNLA-LLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 449 (608)
Q Consensus 371 ~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 449 (608)
+|++|++++ +.+.... .......+++|+.|+++++. +... ....+..+++|+.|+++++. +...........+++
T Consensus 351 ~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 351 NLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSL-KTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHL 426 (606)
T ss_dssp TCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCS-CEEE-CTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTT
T ss_pred cCCEEECCC-CccccccCcchhcccCCCCCEEECCCCc-CCcC-CHHHhcCCccCCeEECCCCc-CCCcccchhhhCccc
Confidence 777777766 3333221 01112456777777777753 2211 11223456778888887763 221111122345788
Q ss_pred CcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHH--HHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCc
Q 007312 450 LTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGI--MAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLL 527 (608)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 527 (608)
|++|++++|. +.......+..+++|++|++++|. ++...+ ...+..+++|+.|++++| .++......+ ..+++|
T Consensus 427 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L 502 (606)
T 3t6q_A 427 LKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF-TSLKMM 502 (606)
T ss_dssp CCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTT-TTCTTC
T ss_pred CCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccChhhh-ccccCC
Confidence 8888888854 554455566677788888888864 432111 122356888999999988 4554332222 357899
Q ss_pred ceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecc
Q 007312 528 KDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 528 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
+.|++++|. ++......+. .+++| .|++++|..... .+..+..+++|+.|++++|++...
T Consensus 503 ~~L~Ls~N~-l~~~~~~~l~-~l~~L-~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 503 NHVDLSHNR-LTSSSIEALS-HLKGI-YLNLASNHISII--LPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CEEECCSSC-CCGGGGGGGT-TCCSC-EEECCSSCCCCC--CGGGHHHHHTSSEEECTTCCEECS
T ss_pred CEEECCCCc-cCcCChhHhC-ccccc-EEECcCCccccc--CHhhcccCCCCCEEeCCCCCcccc
Confidence 999999864 7766555553 67888 888888754321 122345678999999999988753
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.3e-27 Score=256.22 Aligned_cols=425 Identities=20% Similarity=0.179 Sum_probs=265.9
Q ss_pred cCCCCceeeccccCCCChhhHHH--HHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHH-HHh
Q 007312 136 GFSKLEKLSLIWCSNISSLGLMS--LAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVD-LAH 212 (608)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~ 212 (608)
.+++|++|+++++. +.. .++. .+.++++|++|++++|.+.......+...+++|++|+++++.. ....... ...
T Consensus 98 ~l~~L~~L~Ls~n~-l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~ 174 (768)
T 3rgz_A 98 CSASLTSLDLSRNS-LSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI-SGANVVGWVLS 174 (768)
T ss_dssp CCTTCCEEECCSSE-EEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC-EEETHHHHHHT
T ss_pred cCCCCCEEECCCCc-CCC-cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc-CCcCChhhhhh
Confidence 46788888888763 221 1222 4567888889998888764333333323478888888887743 2222111 112
Q ss_pred hcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCC
Q 007312 213 GCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCL 292 (608)
Q Consensus 213 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 292 (608)
...++|++|++++|. +.... . ...+++|++|++++|.+...... +..+++|++|+++.+.+.......+ ..++
T Consensus 175 ~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~ 247 (768)
T 3rgz_A 175 DGCGELKHLAISGNK-ISGDV--D-VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI-STCT 247 (768)
T ss_dssp TCCTTCCEEECCSSE-EESCC--B-CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT-TTCS
T ss_pred ccCCCCCEEECCCCc-ccccC--C-cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHH-hcCC
Confidence 334788899888873 22111 0 15678899999988877653222 4567889999998888876555544 3478
Q ss_pred CCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCccc
Q 007312 293 SLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNL 372 (608)
Q Consensus 293 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 372 (608)
+|++|+++++. +...... . .+++|++|++.++.. +......+...+++|++|+++++.. ... .......+++|
T Consensus 248 ~L~~L~Ls~n~-l~~~~~~--~-~l~~L~~L~L~~n~l-~~~ip~~~~~~~~~L~~L~Ls~n~l-~~~-~p~~~~~l~~L 320 (768)
T 3rgz_A 248 ELKLLNISSNQ-FVGPIPP--L-PLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLSGNHF-YGA-VPPFFGSCSLL 320 (768)
T ss_dssp SCCEEECCSSC-CEESCCC--C-CCTTCCEEECCSSEE-EESCCCCSCTTCTTCSEEECCSSEE-EEC-CCGGGGGCTTC
T ss_pred CCCEEECCCCc-ccCccCc--c-ccCCCCEEECcCCcc-CCccCHHHHhhcCcCCEEECcCCcC-CCc-cchHHhcCCCc
Confidence 89999988753 2211110 1 478899999888752 1111111222348899999988542 211 11122357899
Q ss_pred ceEecccccccC-hHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCc-cCcEEecccccccChHHHHHHH-hcCCC
Q 007312 373 TELALLYCQRIG-NLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQ-NLKKLHIRRCYKIGNNGIVAVG-EHCNS 449 (608)
Q Consensus 373 ~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~~ 449 (608)
++|+++++ .+. ..+ ......+++|+.|++++|. ++......+ ..++ +|+.|+++++. +.......+. ..+++
T Consensus 321 ~~L~L~~n-~l~~~ip-~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 321 ESLALSSN-NFSGELP-MDTLLKMRGLKVLDLSFNE-FSGELPESL-TNLSASLLTLDLSSNN-FSGPILPNLCQNPKNT 395 (768)
T ss_dssp CEEECCSS-EEEEECC-HHHHTTCTTCCEEECCSSE-EEECCCTTH-HHHTTTCSEEECCSSE-EEEECCTTTTCSTTCC
T ss_pred cEEECCCC-cccCcCC-HHHHhcCCCCCEEeCcCCc-cCccccHHH-HhhhcCCcEEEccCCC-cCCCcChhhhhcccCC
Confidence 99999884 333 222 2223578899999998863 221111112 2244 89999998873 2211111111 12578
Q ss_pred CcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcce
Q 007312 450 LTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKD 529 (608)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~ 529 (608)
|++|++++|. +.......+..+++|+.|++++|. ++.... ..+..+++|+.|++++|. +.......+ ..+++|+.
T Consensus 396 L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p-~~l~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~ 470 (768)
T 3rgz_A 396 LQELYLQNNG-FTGKIPPTLSNCSELVSLHLSFNY-LSGTIP-SSLGSLSKLRDLKLWLNM-LEGEIPQEL-MYVKTLET 470 (768)
T ss_dssp CCEEECCSSE-EEEECCGGGGGCTTCCEEECCSSE-EESCCC-GGGGGCTTCCEEECCSSC-CCSCCCGGG-GGCTTCCE
T ss_pred ccEEECCCCc-cccccCHHHhcCCCCCEEECcCCc-ccCccc-HHHhcCCCCCEEECCCCc-ccCcCCHHH-cCCCCceE
Confidence 9999999965 555556677888899999999964 432211 223568999999999994 553322222 35899999
Q ss_pred eecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 530 VVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 530 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
|++++|. ++......+ ..+++|++|++++|..... ++..+..+++|+.|++++|+++.
T Consensus 471 L~L~~N~-l~~~~p~~l-~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 471 LILDFND-LTGEIPSGL-SNCTNLNWISLSNNRLTGE--IPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp EECCSSC-CCSCCCGGG-GGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCEE
T ss_pred EEecCCc-ccCcCCHHH-hcCCCCCEEEccCCccCCc--CChHHhcCCCCCEEECCCCcccC
Confidence 9999975 654333333 4789999999999874422 22345689999999999998873
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=1.4e-27 Score=250.71 Aligned_cols=427 Identities=17% Similarity=0.119 Sum_probs=192.1
Q ss_pred cCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcC
Q 007312 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (608)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (608)
.+++|++|+++++. +.. ..+..+..+++|++|++++|.+.......+. .+++|++|+++++.. ....... ....
T Consensus 55 ~l~~L~~L~Ls~n~-i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i-~~l~~~~--~~~l 128 (606)
T 3t6q_A 55 RLINLTFLDLTRCQ-IYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQTGI-SSIDFIP--LHNQ 128 (606)
T ss_dssp TCTTCSEEECTTCC-CCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTSCC-SCGGGSC--CTTC
T ss_pred cCccceEEECCCCc-cce-eChhhccCccccCeeeCCCCcccccChhhhc-ccccccEeeccccCc-ccCCcch--hccC
Confidence 46677777777652 221 1123345677777777777766533333333 367777777776532 2110000 1223
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccc--eeeecccCCChHHHHHHHhcCCC
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLR--VLKLQCINVTDEALVAVGNQCLS 293 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~~l~~~~~~ 293 (608)
++|++|+++++ .+.......+. .+++|++|++++|.+.......+. .+++|+ .|+++.+.+.......+. ..+
T Consensus 129 ~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~ 203 (606)
T 3t6q_A 129 KTLESLYLGSN-HISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFD--SAV 203 (606)
T ss_dssp TTCCEEECCSS-CCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTT--TCE
T ss_pred CcccEEECCCC-cccccCccccc-CCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhh--hcc
Confidence 67777777776 33322212222 267777888777776654333333 567777 666666655432221111 123
Q ss_pred CcEEEecccc---------------------------------------------------CCChHHHHHHhhcCCCCCe
Q 007312 294 LELLALYSFQ---------------------------------------------------QFTDKGLHAVGKGCKKLKN 322 (608)
Q Consensus 294 L~~L~l~~~~---------------------------------------------------~~~~~~~~~~~~~~~~L~~ 322 (608)
|++|++.++. .+..... .....+++|++
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 282 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQE 282 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT-TTTTTCTTCSE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH-HHhccccCCCE
Confidence 4444443322 1111000 00122445555
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEE
Q 007312 323 LTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALH 402 (608)
Q Consensus 323 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 402 (608)
|+++++. ++ .+......+++|++|+++++. +....... ...+++|++|+++++......+ ......+++|+.|+
T Consensus 283 L~l~~n~-l~--~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 283 LDLTATH-LS--ELPSGLVGLSTLKKLVLSANK-FENLCQIS-ASNFPSLTHLSIKGNTKRLELG-TGCLENLENLRELD 356 (606)
T ss_dssp EECTTSC-CS--CCCSSCCSCTTCCEEECTTCC-CSBGGGGC-GGGCTTCSEEECCSCSSCCBCC-SSTTTTCTTCCEEE
T ss_pred EeccCCc-cC--CCChhhcccccCCEEECccCC-cCcCchhh-hhccCcCCEEECCCCCcccccc-hhhhhccCcCCEEE
Confidence 5555443 11 011112234455555555532 22211111 1234555555555531110100 01113455555555
Q ss_pred eccCCCCChHH-HHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEec
Q 007312 403 LVDCSSIGDDA-ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVS 481 (608)
Q Consensus 403 l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 481 (608)
++++. +.... ....+..+++|++|+++++. +.... ......+++|++|++++|..........+..+++|+.|+++
T Consensus 357 l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 357 LSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLK-TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp CCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEEC-TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred CCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCC-HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 55542 22110 01122345566666665542 11110 11122355666666665432111111224445556666666
Q ss_pred CCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHH--HHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecc
Q 007312 482 GCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMV--ELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMV 559 (608)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 559 (608)
+|. ++.... ..+..+++|++|++++| .+++..+. .....+++|+.|++++|. ++......+ ..+++|++|+++
T Consensus 434 ~n~-l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls 508 (606)
T 3t6q_A 434 HSL-LDISSE-QLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAF-TSLKMMNHVDLS 508 (606)
T ss_dssp TCC-CBTTCT-TTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECC
T ss_pred CCc-cCCcCH-HHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc-cCccChhhh-ccccCCCEEECC
Confidence 642 222111 11234566666666666 23321110 112345666666666653 443332223 246666666666
Q ss_pred cCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 560 YCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 560 ~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
+|. ++.... ..+..+++| .|++++|+++.
T Consensus 509 ~N~-l~~~~~-~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 509 HNR-LTSSSI-EALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp SSC-CCGGGG-GGGTTCCSC-EEECCSSCCCC
T ss_pred CCc-cCcCCh-hHhCccccc-EEECcCCcccc
Confidence 654 332222 223456666 66666666653
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=6.4e-27 Score=245.64 Aligned_cols=423 Identities=17% Similarity=0.117 Sum_probs=198.0
Q ss_pred cCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCC--CchHHHHHHhh
Q 007312 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL--TDTGLVDLAHG 213 (608)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~ 213 (608)
.+++|++|+++++ .+... .+..+.++++|++|++++|.+.......+.. +++|++|+++++... ....+ .
T Consensus 54 ~l~~L~~L~Ls~n-~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~-----~ 125 (606)
T 3vq2_A 54 NFSELQWLDLSRC-EIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPI-----G 125 (606)
T ss_dssp TCTTCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCC-----T
T ss_pred CCccCcEEeCCCC-ccccc-CHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCcccccccccc-----C
Confidence 4677778877765 22221 1223456777888888777765433333333 677777777766321 11111 1
Q ss_pred cCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhH---HHHH-----------------------hcCC
Q 007312 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGV---HAVA-----------------------QGCP 267 (608)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~-----------------------~~~~ 267 (608)
..++|++|++++| .+....++.....+++|++|++++|.+..... ..+. ....
T Consensus 126 ~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc
Confidence 2267777777776 33321222233567777777777766543221 1111 0112
Q ss_pred ccceeeecccCCChHHHHHHHhcCCCCcEEEec--------------------------------cccCCChHHHHHHhh
Q 007312 268 LLRVLKLQCINVTDEALVAVGNQCLSLELLALY--------------------------------SFQQFTDKGLHAVGK 315 (608)
Q Consensus 268 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~--------------------------------~~~~~~~~~~~~~~~ 315 (608)
+|+.|+++++.+...........+++|+.+.+. ..+.+...... ..
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~ 282 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FH 282 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cc
Confidence 566666666666544444444445555554442 11111111111 22
Q ss_pred cCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccc---------------
Q 007312 316 GCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYC--------------- 380 (608)
Q Consensus 316 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--------------- 380 (608)
.+++|+.|++.++.. ... . ....+++|++|+++++.. ... +.+ .+++|++|+++++
T Consensus 283 ~l~~L~~L~l~~~~~-~~l--~-~l~~~~~L~~L~l~~n~l-~~l--p~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~ 353 (606)
T 3vq2_A 283 CLANVSAMSLAGVSI-KYL--E-DVPKHFKWQSLSIIRCQL-KQF--PTL--DLPFLKSLTLTMNKGSISFKKVALPSLS 353 (606)
T ss_dssp GGTTCSEEEEESCCC-CCC--C-CCCTTCCCSEEEEESCCC-SSC--CCC--CCSSCCEEEEESCSSCEECCCCCCTTCC
T ss_pred cCCCCCEEEecCccc-hhh--h-hccccccCCEEEcccccC-ccc--ccC--CCCccceeeccCCcCccchhhccCCCCC
Confidence 245555555554432 110 0 112334555555555332 111 111 2344444444443
Q ss_pred ------cccChHH-HHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEE
Q 007312 381 ------QRIGNLA-LLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTEL 453 (608)
Q Consensus 381 ------~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 453 (608)
+.+.... .......+++|+.|++++|. +.. +...+..+++|+.|+++++. +...........+++|++|
T Consensus 354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEE
T ss_pred EEECcCCccCCCcchhhhhccCCcccEeECCCCc-ccc--chhhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEE
Confidence 2221110 00111234555555555432 111 11112234555555555542 1111110122345666666
Q ss_pred ecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecc
Q 007312 454 SLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLS 533 (608)
Q Consensus 454 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 533 (608)
++++|. +.......+..+++|++|++++| .++...+...+..+++|+.|++++| .++......+ ..+++|+.|+++
T Consensus 430 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls 505 (606)
T 3vq2_A 430 DISYTN-TKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVF-DTLHRLQLLNMS 505 (606)
T ss_dssp ECTTSC-CEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECC
T ss_pred ECcCCC-CCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhh-cccccCCEEECC
Confidence 666643 33333344555566666666664 2332111222334667777777776 3443222222 246777777777
Q ss_pred cccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCC-CCcEEEecceeeec
Q 007312 534 HCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCA-NIKKVMVEKWKVSE 591 (608)
Q Consensus 534 ~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~ 591 (608)
+|. ++......+ ..+++|+.|++++|+ ++. ++..+..++ +|+.|++++|++..
T Consensus 506 ~N~-l~~~~~~~~-~~l~~L~~L~l~~N~-l~~--~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 506 HNN-LLFLDSSHY-NQLYSLSTLDCSFNR-IET--SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SSC-CSCEEGGGT-TTCTTCCEEECTTSC-CCC--EESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCc-CCCcCHHHc-cCCCcCCEEECCCCc-Ccc--cCHhHhhhcccCcEEEccCCCccc
Confidence 753 544332233 346677777777765 332 222234555 47777777776653
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.3e-24 Score=225.33 Aligned_cols=425 Identities=16% Similarity=0.119 Sum_probs=251.0
Q ss_pred hcCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhc
Q 007312 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGC 214 (608)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 214 (608)
..+++|++|+++++ .+... .+..+..+++|++|++++|.+.......+.. +++|++|+++++.... ...... ...
T Consensus 47 ~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~-~~~~~~-~~~ 121 (549)
T 2z81_A 47 RACANLQVLILKSS-RINTI-EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNLMGNPYQT-LGVTSL-FPN 121 (549)
T ss_dssp SSCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTSCCCSCCHHHHTT-CTTCCEEECTTCCCSS-SCSSCS-CTT
T ss_pred hcCCcccEEECCCC-CcCcc-ChhhccccccCCEEECCCCccCccCHHHhcc-CCCCcEEECCCCcccc-cchhhh-hhc
Confidence 35678888888765 23221 1223456788888888888776544444544 7888888888764211 000000 112
Q ss_pred CCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCC
Q 007312 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (608)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 294 (608)
.++|++|+++++..+...... ....+++|++|+++++.+....... +..+++|++|+++.+..... ...+...+++|
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L 198 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESAFL-LEIFADILSSV 198 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBSTTH-HHHHHHSTTTB
T ss_pred cCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhh-hhccccCceEecccCccccc-chhhHhhcccc
Confidence 267888888877433322111 2245788888888877766533222 33567888888877766442 22333457888
Q ss_pred cEEEeccccCCChHH--HHHHhhcCCCCCeEecCCCCCCCHHHHHHHH---hcCCCCcEEEecCCCCCC-----------
Q 007312 295 ELLALYSFQQFTDKG--LHAVGKGCKKLKNLTLSDCYFLSDMGLEAIA---TGCKELTHLEINGCHNIG----------- 358 (608)
Q Consensus 295 ~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~----------- 358 (608)
++|++.++. +.... ...+...+++|+.|++.++. +++.....+. ..+++|+.+++.+|...+
T Consensus 199 ~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 199 RYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp SEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cEEEccCCc-cccccccccchhhhhhcccceeccccc-cchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 888887632 32210 00112235677777777665 3444333332 334566666665542111
Q ss_pred ------------------hh----HHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHH
Q 007312 359 ------------------TM----GLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICS 416 (608)
Q Consensus 359 ------------------~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 416 (608)
.. .+..+....++|++|++++ +.+...+ ..+...+++|+.|+++++ .+.......
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~-n~l~~ip-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 353 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKVFLVP-CSFSQHLKSLEFLDLSEN-LMVEEYLKN 353 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES-SCCCCCC-HHHHHHCTTCCEEECCSS-CCCHHHHHH
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc-CccccCC-HHHHhcCccccEEEccCC-ccccccccc
Confidence 00 0111222346777777777 3444333 223346788999999886 355433221
Q ss_pred --HHhcCccCcEEecccccccChHH-HHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHH
Q 007312 417 --IAEGCQNLKKLHIRRCYKIGNNG-IVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMA 493 (608)
Q Consensus 417 --~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 493 (608)
....+++|+.|++++| .+.... .......+++|++|++++|. +.. ....+...++|++|++++|. ++.. ..
T Consensus 354 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-lp~~~~~~~~L~~L~Ls~N~-l~~l--~~ 427 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHP-MPDSCQWPEKMRFLNLSSTG-IRVV--KT 427 (549)
T ss_dssp HTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCC-CCSCCCCCTTCCEEECTTSC-CSCC--CT
T ss_pred hhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-Ccc-CChhhcccccccEEECCCCC-cccc--cc
Confidence 1345788999999887 444332 22445678889999998864 442 22344556679999998864 4321 00
Q ss_pred HHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHH
Q 007312 494 IAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVV 573 (608)
Q Consensus 494 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 573 (608)
...++|+.|++++| .++.. ...+++|++|++++|. ++.. ... ..+++|++|++++|. ++.. .+..+
T Consensus 428 --~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N~-l~~i--p~~-~~l~~L~~L~Ls~N~-l~~~-~~~~~ 493 (549)
T 2z81_A 428 --CIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRNK-LKTL--PDA-SLFPVLLVMKISRNQ-LKSV-PDGIF 493 (549)
T ss_dssp --TSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSSC-CSSC--CCG-GGCTTCCEEECCSSC-CCCC-CTTGG
T ss_pred --hhcCCceEEECCCC-Chhhh-----cccCChhcEEECCCCc-cCcC--CCc-ccCccCCEEecCCCc-cCCc-CHHHH
Confidence 11368999999988 46542 2468999999999974 6632 222 357899999999875 4321 12235
Q ss_pred HcCCCCcEEEecceeeecc
Q 007312 574 SGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 574 ~~~~~L~~l~l~~~~~~~~ 592 (608)
..+++|+.|++++|++...
T Consensus 494 ~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp GGCTTCCEEECCSSCBCCC
T ss_pred hcCcccCEEEecCCCccCC
Confidence 6889999999999987643
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=7.4e-26 Score=237.55 Aligned_cols=281 Identities=15% Similarity=0.038 Sum_probs=179.4
Q ss_pred cCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 007312 265 GCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCK 344 (608)
Q Consensus 265 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 344 (608)
.+++|+.|+++++.+.... ....+++|++|++.++.. .. +..+ .+++|+.|+++++...... ....++
T Consensus 283 ~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~--lp~~--~l~~L~~L~l~~n~~~~~~----~~~~l~ 350 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQ--FPTL--DLPFLKSLTLTMNKGSISF----KKVALP 350 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SS--CCCC--CCSSCCEEEEESCSSCEEC----CCCCCT
T ss_pred cCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cc--cccC--CCCccceeeccCCcCccch----hhccCC
Confidence 4566666776665554322 123356788888877543 22 1122 5788888888887533322 123578
Q ss_pred CCcEEEecCCCCCChhH-HHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCcc
Q 007312 345 ELTHLEINGCHNIGTMG-LESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (608)
Q Consensus 345 ~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (608)
+|++|+++++. +.... .......+++|++|+++++ .+...+ .....+++|+.|+++++. +........+..+++
T Consensus 351 ~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 351 SLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS--ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEK 425 (606)
T ss_dssp TCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC-SEEEEC--CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTT
T ss_pred CCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC-ccccch--hhccCCCCCCeeECCCCc-cCCccChhhhhcccc
Confidence 99999998854 32211 1223345799999999984 344322 223568999999999863 322111123456899
Q ss_pred CcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCCh-HHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCc
Q 007312 424 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGD-EALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELN 502 (608)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 502 (608)
|+.|++++|. +.... ......+++|++|++++|. +.+ .....+..+++|+.|++++| .++..... .+..+++|+
T Consensus 426 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~ 500 (606)
T 3vq2_A 426 LLYLDISYTN-TKIDF-DGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQ 500 (606)
T ss_dssp CCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCC
T ss_pred CCEEECcCCC-CCccc-hhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCC
Confidence 9999999874 32211 1223468999999999975 444 24556677889999999996 45532222 235689999
Q ss_pred EEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCC-ccCeeecccCCCCCHHHHHHH
Q 007312 503 YLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCR-MLESCHMVYCPGITAAGVATV 572 (608)
Q Consensus 503 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~-~L~~L~l~~c~~~~~~~~~~~ 572 (608)
+|++++| .++......+ ..+++|+.|++++|. ++..... ...++ +|+.|++++|+...+-....+
T Consensus 501 ~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~-l~~~p~~--~~~l~~~L~~l~l~~N~~~c~c~~~~~ 566 (606)
T 3vq2_A 501 LLNMSHN-NLLFLDSSHY-NQLYSLSTLDCSFNR-IETSKGI--LQHFPKSLAFFNLTNNSVACICEHQKF 566 (606)
T ss_dssp EEECCSS-CCSCEEGGGT-TTCTTCCEEECTTSC-CCCEESC--GGGSCTTCCEEECCSCCCCCSSTTHHH
T ss_pred EEECCCC-cCCCcCHHHc-cCCCcCCEEECCCCc-CcccCHh--HhhhcccCcEEEccCCCcccCCccHHH
Confidence 9999999 5665432332 358999999999975 7643322 34566 599999999886654333333
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=2e-25 Score=237.44 Aligned_cols=429 Identities=18% Similarity=0.157 Sum_probs=194.2
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCC--CCchHHHHHHhhc
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG--LTDTGLVDLAHGC 214 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~ 214 (608)
+++|++|+++++. +... .+..+..+++|++|++++|.+.......+. .+++|++|+++++.. +....+ ..
T Consensus 48 l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~-----~~ 119 (680)
T 1ziw_A 48 YSQLTSLDVGFNT-ISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKIKNNPF-----VK 119 (680)
T ss_dssp GTTCSEEECCSSC-CCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCCSCTT-----TT
T ss_pred CCcCcEEECCCCc-cCcc-CHHHHhcccCcCEEECCCCccCccChhhhc-cCCCCCEEECCCCccCccChhHc-----cc
Confidence 4566666665442 2111 122344566666666666654421111222 255666666665421 111111 11
Q ss_pred CCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHH-hcCCccceeeecccCCChHHHHHHHhcCCC
Q 007312 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVA-QGCPLLRVLKLQCINVTDEALVAVGNQCLS 293 (608)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 293 (608)
.++|++|++++| .+...... ....+++|++|++++|.+.......+. ..+++|+.|+++.+.+.......+ ..+++
T Consensus 120 l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~ 196 (680)
T 1ziw_A 120 QKNLITLDLSHN-GLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGR 196 (680)
T ss_dssp CTTCCEEECCSS-CCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSE
T ss_pred cCCCCEEECCCC-cccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhh
Confidence 256666666665 22211111 113456666666666655443333321 134566666666555443222222 22455
Q ss_pred CcEEEeccccCCChHHHHHHh--hcCCCCCeEecCCCCCCCHHHHHHHHhcC--CCCcEEEecCCCCCChhHHHHHHhcC
Q 007312 294 LELLALYSFQQFTDKGLHAVG--KGCKKLKNLTLSDCYFLSDMGLEAIATGC--KELTHLEINGCHNIGTMGLESIGKFC 369 (608)
Q Consensus 294 L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~ 369 (608)
|+.|.+.+. .+.......+. -..++|+.|+++++.. .......+ ..+ ++|+.|+++++. +....... ...+
T Consensus 197 L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l-~~~~~~~~-~~l~~~~L~~L~Ls~n~-l~~~~~~~-~~~l 271 (680)
T 1ziw_A 197 LFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQL-STTSNTTF-LGLKWTNLTMLDLSYNN-LNVVGNDS-FAWL 271 (680)
T ss_dssp ECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCC-CEECTTTT-GGGGGSCCCEEECTTSC-CCEECTTT-TTTC
T ss_pred hhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcc-cccChhHh-hccCcCCCCEEECCCCC-cCccCccc-ccCc
Confidence 666665542 22222222211 1236777777776652 21111111 122 358888887743 32221111 2346
Q ss_pred cccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHH---HH----HHHhcCccCcEEecccccccChHHHHH
Q 007312 370 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDA---IC----SIAEGCQNLKKLHIRRCYKIGNNGIVA 442 (608)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~ 442 (608)
++|++|++++ +.+..... .....+++|+.|+++++....... +. ..+..+++|++|+++++. +.... ..
T Consensus 272 ~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~-~~ 347 (680)
T 1ziw_A 272 PQLEYFFLEY-NNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIK-SN 347 (680)
T ss_dssp TTCCEEECCS-CCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCC-TT
T ss_pred ccccEeeCCC-CccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCC-hh
Confidence 7888888877 34433221 122457888888887642111100 00 023457888888888763 33211 11
Q ss_pred HHhcCCCCcEEecccCCc-CChHHHHhhhc--CCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHH
Q 007312 443 VGEHCNSLTELSLRFCDR-VGDEALISIGQ--GCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVE 519 (608)
Q Consensus 443 ~~~~~~~L~~L~l~~~~~-~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 519 (608)
....+++|++|++++|.. ........+.. .++|+.|++++|. ++.... ..+..+++|+.|++++|. ++......
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~ 424 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIES-DAFSWLGHLEVLDLGLNE-IGQELTGQ 424 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC-CEEECCSG
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeECh-hhhhCCCCCCEEeCCCCc-CccccCcc
Confidence 224567888888876531 11000001111 1245555555432 221111 111234555555555542 22110001
Q ss_pred Hhcc------------------------CCCcceeecccccCccHHH-HHHHHHcCCccCeeecccCCCCCHHHHHHHHH
Q 007312 520 LGKG------------------------CPLLKDVVLSHCRQITDVG-LSHLVKNCRMLESCHMVYCPGITAAGVATVVS 574 (608)
Q Consensus 520 l~~~------------------------~~~L~~L~l~~c~~l~~~~-~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~ 574 (608)
...+ +|+|+.|++++|. ++..+ .......+++|+.|++++|. ++.. ....+.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i-~~~~~~ 501 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNN-IANI-NDDMLE 501 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSC-CCCC-CTTTTT
T ss_pred cccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCCC-CCcC-Chhhhc
Confidence 1122 4555555555432 22111 11112356777888887764 3221 112245
Q ss_pred cCCCCcEEEecceeeec
Q 007312 575 GCANIKKVMVEKWKVSE 591 (608)
Q Consensus 575 ~~~~L~~l~l~~~~~~~ 591 (608)
++++|+.|++++|+++.
T Consensus 502 ~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLAR 518 (680)
T ss_dssp TCTTCCEEECCSSCCGG
T ss_pred cccccCEEeCCCCCccc
Confidence 77888888888888765
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.4e-21 Score=197.33 Aligned_cols=210 Identities=19% Similarity=0.138 Sum_probs=117.4
Q ss_pred hCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcC
Q 007312 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (608)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (608)
.+++|++|++.++.+.. +..+ ..+++|++|+++++....... ....++|++|+++++ .+..... ...+
T Consensus 44 ~l~~l~~L~l~~~~i~~--l~~~-~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~---~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS--IDGV-EYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNN-QIADITP---LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCCCC--CTTG-GGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSS-CCCCCGG---GTTC
T ss_pred HhccccEEecCCCCCcc--Ccch-hhhcCCCEEECCCCccCCchh-----hhccccCCEEECCCC-ccccChh---hcCC
Confidence 35789999999987653 2233 348889999998874322221 223378888888887 3443221 4678
Q ss_pred CCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCC
Q 007312 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (608)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 321 (608)
++|++|+++++.+..... +..+++|++|+++.+.+.... . ...+++|++|.+.+ .+... .. ...+++|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~--~~~~~--~~-~~~l~~L~ 180 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSFGN--QVTDL--KP-LANLTTLE 180 (466)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEEEE--SCCCC--GG-GTTCTTCC
T ss_pred CCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCCh--h-hccCCcccEeecCC--cccCc--hh-hccCCCCC
Confidence 888888888887765432 456788888888776655421 1 23467777777753 12111 11 23366677
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEE
Q 007312 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQAL 401 (608)
Q Consensus 322 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 401 (608)
.|+++++.. ... . ....+++|++|+++++....... ...+++|++|+++++ .+...+ ....+++|+.|
T Consensus 181 ~L~l~~n~l-~~~--~-~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L 248 (466)
T 1o6v_A 181 RLDISSNKV-SDI--S-VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGN-QLKDIG---TLASLTNLTDL 248 (466)
T ss_dssp EEECCSSCC-CCC--G-GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEE
T ss_pred EEECcCCcC-CCC--h-hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCC-Ccccch---hhhcCCCCCEE
Confidence 777766652 211 1 12345666666666543222111 223455666666552 232211 12344555555
Q ss_pred EeccC
Q 007312 402 HLVDC 406 (608)
Q Consensus 402 ~l~~~ 406 (608)
++++|
T Consensus 249 ~l~~n 253 (466)
T 1o6v_A 249 DLANN 253 (466)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55554
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=6.4e-26 Score=236.49 Aligned_cols=421 Identities=17% Similarity=0.136 Sum_probs=231.9
Q ss_pred cCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcC
Q 007312 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (608)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (608)
.+++|++|+++++. +... .+..+..+++|++|++++|.+.......+.. +++|++|+++++........ .....
T Consensus 50 ~l~~L~~L~Ls~n~-i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~---~~~~l 123 (570)
T 2z63_A 50 SFPELQVLDLSRCE-IQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENF---PIGHL 123 (570)
T ss_dssp TCSSCCEEECTTCC-CCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTSCCCCSTTC---SCTTC
T ss_pred CCCCceEEECCCCc-CCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcC-ccccccccccccccccCCCc---ccccc
Confidence 46788888887662 3221 1223456788888888888765433333333 77788888876532111100 01223
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCcc----ceeeecccCCChHHHHHHHhcC
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL----RVLKLQCINVTDEALVAVGNQC 291 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~ 291 (608)
++|++|+++++ .+....++..+..+++|++|+++++.+.......+. .+++| +.++++.+.+.......+. .
T Consensus 124 ~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~ 199 (570)
T 2z63_A 124 KTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK--E 199 (570)
T ss_dssp TTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCEECTTTTT--T
T ss_pred ccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHcc-chhccchhhhhcccCCCCceecCHHHhc--c
Confidence 67888888776 333211122235677888888887766543211111 12233 4555555444332111111 1
Q ss_pred CCCcEEEeccccCCChHHHH---------------------------------------------------------HHh
Q 007312 292 LSLELLALYSFQQFTDKGLH---------------------------------------------------------AVG 314 (608)
Q Consensus 292 ~~L~~L~l~~~~~~~~~~~~---------------------------------------------------------~~~ 314 (608)
.+|++|++.++.. ....+. ...
T Consensus 200 ~~L~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~ 278 (570)
T 2z63_A 200 IRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278 (570)
T ss_dssp CEEEEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT
T ss_pred CcceeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh
Confidence 1344444433110 000011 112
Q ss_pred hcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhc
Q 007312 315 KGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 394 (608)
Q Consensus 315 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 394 (608)
..+++|+.|++.++.. . .+......+ +|++|+++++.. ... .. ..+++|+.|+++++......+. ..
T Consensus 279 ~~l~~L~~L~l~~~~l-~--~l~~~~~~~-~L~~L~l~~n~~-~~l--~~--~~l~~L~~L~l~~n~~~~~~~~----~~ 345 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTI-E--RVKDFSYNF-GWQHLELVNCKF-GQF--PT--LKLKSLKRLTFTSNKGGNAFSE----VD 345 (570)
T ss_dssp GGGTTCSEEEEESCEE-C--SCCBCCSCC-CCSEEEEESCBC-SSC--CB--CBCSSCCEEEEESCBSCCBCCC----CB
T ss_pred cCcCcccEEEecCccc-h--hhhhhhccC-CccEEeeccCcc-ccc--Cc--ccccccCEEeCcCCcccccccc----cc
Confidence 2256666776666542 1 111112233 677777776432 211 11 2467888888877432211111 46
Q ss_pred CCCCcEEEeccCCCCChHH-HHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHH-HHhhhcC
Q 007312 395 CKSLQALHLVDCSSIGDDA-ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEA-LISIGQG 472 (608)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~ 472 (608)
+++|+.|+++++. ++... .......+++|+.|++++|. +...... ...+++|++|++++|. +.... ...+..+
T Consensus 346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 420 (570)
T 2z63_A 346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 420 (570)
T ss_dssp CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTTTTC
T ss_pred CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCc-cccccchhhhhcC
Confidence 7888888888863 33211 12334568889999888873 2211111 3457889999998865 33222 2345667
Q ss_pred CCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCc
Q 007312 473 CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRM 552 (608)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 552 (608)
++|++|++++|. +... ....+..+++|+.|++++|. +++..+......+++|+.|++++|. ++......+ ..+++
T Consensus 421 ~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~ 495 (570)
T 2z63_A 421 RNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF-NSLSS 495 (570)
T ss_dssp TTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT-TTCTT
T ss_pred CCCCEEeCcCCc-cccc-chhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccCChhhh-hcccC
Confidence 789999998864 3321 12233458899999999983 4432222233458999999999975 665444344 36889
Q ss_pred cCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecc
Q 007312 553 LESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 553 L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
|++|++++|. ++.. ....+..+++|+.|++++|+++..
T Consensus 496 L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 496 LQVLNMASNQ-LKSV-PDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSC-CSCC-CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEeCCCCc-CCCC-CHHHhhcccCCcEEEecCCcccCC
Confidence 9999999875 3322 122356789999999999988754
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=6.3e-24 Score=218.38 Aligned_cols=418 Identities=15% Similarity=0.068 Sum_probs=248.5
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (608)
++|++|+++++. +... .+..+..+++|++|++++|.+.......+.. +++|++|+++++.- ...... ..++
T Consensus 21 ~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l-~~lp~~-----~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNY-ISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKL-VKISCH-----PTVN 91 (520)
T ss_dssp TTCSEEECCSSC-CCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCC-CEEECC-----CCCC
T ss_pred ccccEEECCCCc-cccc-ChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCce-eecCcc-----ccCC
Confidence 689999998763 3322 2345678999999999999887544444444 88999999998742 211110 2388
Q ss_pred ccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCcc--ceeeecccCC--ChHHHHHHHh----
Q 007312 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL--RVLKLQCINV--TDEALVAVGN---- 289 (608)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~~---- 289 (608)
|++|++++| .+....++.....+++|++|++++|.+.... +..+++| +.|+++.+.+ ....+..+..
T Consensus 92 L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 92 LKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred ccEEeccCC-ccccccchhhhccCCcceEEEecCcccchhh----ccccccceeeEEEeecccccccccccccccccccc
Confidence 999999998 4443222233467899999999998887632 3346677 9999987766 2222211111
Q ss_pred ---------------------cCCCCcEEEeccccC---C--ChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHh--
Q 007312 290 ---------------------QCLSLELLALYSFQQ---F--TDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT-- 341 (608)
Q Consensus 290 ---------------------~~~~L~~L~l~~~~~---~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 341 (608)
.+++|+.+++.++.. . ....+. ....+++|+.|++.++. ++...+..+..
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE-TTWNSFIRILQLV 244 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE-EEHHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc-cCHHHHHHHHHHh
Confidence 234555555554210 0 001112 22346777777776654 33333332221
Q ss_pred cCCCCcEEEecCCCCCChhHHHHH----HhcCcccceEecccccc-cChHHHHHHHhcCCCCcEEEeccCCCCChHHHHH
Q 007312 342 GCKELTHLEINGCHNIGTMGLESI----GKFCRNLTELALLYCQR-IGNLALLEVGRGCKSLQALHLVDCSSIGDDAICS 416 (608)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 416 (608)
..++|++|+++++...+.. ...+ ...+++|+.++++++.- +....+.... ..++|+.|+++++. +....
T Consensus 245 ~~~~L~~L~l~~n~l~~~~-p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~-~~~~L~~L~l~~n~-l~~~~--- 318 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQL-DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF-SNMNIKNFTVSGTR-MVHML--- 318 (520)
T ss_dssp HTSSCSEEEEEEEEEESCC-CCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHH-HTCCCSEEEEESSC-CCCCC---
T ss_pred hhCcccEEEeecccccCcc-ccchhhcccccCceeEeccccccceecchhhhhccc-ccCceeEEEcCCCc-ccccc---
Confidence 2357777777764311110 0001 02356677777766321 1112222221 23578888888864 22211
Q ss_pred HHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCCh--HHHHhhhcCCCccEEEecCCcccCHHHHHHH
Q 007312 417 IAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGD--EALISIGQGCSLQHLNVSGCHQIGDAGIMAI 494 (608)
Q Consensus 417 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 494 (608)
....+++|++|+++++ .+..... .....+++|++|++++|. +.. .....+..+++|+.|++++|. ++.......
T Consensus 319 ~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~ 394 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNN-LLTDTVF-ENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGD 394 (520)
T ss_dssp CCSSCCCCCEEECCSS-CCCTTTT-TTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCS
T ss_pred chhhCCcccEEEeECC-ccChhhh-hhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc-CCcccccch
Confidence 0145788999999887 3443221 122467889999998865 554 333557778889999998864 442111112
Q ss_pred HhhCCCCcEEeecCCCCCChHHHHHHhccC-CCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHH-H
Q 007312 495 AKGCPELNYLDVSVLQNLGDQAMVELGKGC-PLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVAT-V 572 (608)
Q Consensus 495 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~-~ 572 (608)
+..+++|+.|++++| .++..... .+ ++|+.|++++|. ++... ..+. .+++|++|++++|. ++. ++. .
T Consensus 395 ~~~l~~L~~L~Ls~N-~l~~~~~~----~l~~~L~~L~Ls~N~-l~~ip-~~~~-~l~~L~~L~L~~N~-l~~--l~~~~ 463 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSN-ILTDTIFR----CLPPRIKVLDLHSNK-IKSIP-KQVV-KLEALQELNVASNQ-LKS--VPDGI 463 (520)
T ss_dssp CCCCTTCCEEECCSS-CCCGGGGG----SCCTTCCEEECCSSC-CCCCC-GGGG-GCTTCCEEECCSSC-CCC--CCTTT
T ss_pred hccCccCCEEECcCC-CCCcchhh----hhcccCCEEECCCCc-ccccc-hhhh-cCCCCCEEECCCCc-CCc--cCHHH
Confidence 345788999999988 46543322 23 689999999974 66322 2233 68999999999875 432 222 3
Q ss_pred HHcCCCCcEEEecceeeecc
Q 007312 573 VSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 573 ~~~~~~L~~l~l~~~~~~~~ 592 (608)
+..+++|+.|++++|+++.+
T Consensus 464 ~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TTTCTTCCEEECCSSCBCCC
T ss_pred hccCCcccEEECcCCCCccc
Confidence 56789999999999988753
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2.8e-23 Score=215.32 Aligned_cols=420 Identities=13% Similarity=0.098 Sum_probs=245.0
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (608)
++|++|+++++. +.... +..+..+++|++|++++|.+.......+.. +++|++|+++++.. ....... + ...++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l-~~~~~~~-~-~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHL-SSLSSSW-F-GPLSS 99 (549)
T ss_dssp TTCCEEECCSSC-CCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCC-CSCCHHH-H-TTCTT
T ss_pred CCccEEECcCCc-cCccC-hhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCcc-CccCHHH-h-ccCCC
Confidence 689999999863 33211 223567899999999999887544444444 89999999998742 2211111 1 22389
Q ss_pred ccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEE
Q 007312 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (608)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 297 (608)
|++|+++++ .+...........+++|++|++++|..........+..+++|++|+++.+.+.......+. .+++|++|
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L 177 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHL 177 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEE
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceE
Confidence 999999998 4443222223467899999999988732222222344689999999998887664433333 47889999
Q ss_pred EeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHH--HHHHhcCCCCcEEEecCCCCCChhHHHHHH---hcCccc
Q 007312 298 ALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGL--EAIATGCKELTHLEINGCHNIGTMGLESIG---KFCRNL 372 (608)
Q Consensus 298 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L 372 (608)
++..+. ... ....+...+++|++|+++++.. ....+ ..+...+++|+.|++.++ .+....+..+. ..+++|
T Consensus 178 ~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 178 TLHLSE-SAF-LLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEECSB-STT-HHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTC
T ss_pred ecccCc-ccc-cchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccc
Confidence 998643 322 2233345589999999998763 22100 011234679999999984 45555455443 356889
Q ss_pred ceEecccccccC--hH---H----------------------------HHHHHhcCCCCcEEEeccCCCCChHHHHHHHh
Q 007312 373 TELALLYCQRIG--NL---A----------------------------LLEVGRGCKSLQALHLVDCSSIGDDAICSIAE 419 (608)
Q Consensus 373 ~~L~l~~~~~~~--~~---~----------------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 419 (608)
+.+++++|.... .. . +..+....++|+.|+++++. +... ...+..
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~i-p~~~~~ 331 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLV-PCSFSQ 331 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCC-CHHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccC-CHHHHh
Confidence 999988753111 00 0 00001123455555555532 2210 112223
Q ss_pred cCccCcEEecccccccChHHHHHH--HhcCCCCcEEecccCCcCChHHH--HhhhcCCCccEEEecCCcccCHHHHHHHH
Q 007312 420 GCQNLKKLHIRRCYKIGNNGIVAV--GEHCNSLTELSLRFCDRVGDEAL--ISIGQGCSLQHLNVSGCHQIGDAGIMAIA 495 (608)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 495 (608)
.+++|+.|+++++ .+........ ...+++|++|++++|. +..... ..+..+++|+.|++++| .++. +....
T Consensus 332 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~ 406 (549)
T 2z81_A 332 HLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSC 406 (549)
T ss_dssp HCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCC
T ss_pred cCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCcc--CChhh
Confidence 4666666666665 3433222111 2345666666666643 433321 33555566666666664 3331 11112
Q ss_pred hhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHc
Q 007312 496 KGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSG 575 (608)
Q Consensus 496 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~ 575 (608)
..+++|++|++++|. ++... ....++|+.|++++|. ++.. ...+++|++|++++|. ++ .++. ...
T Consensus 407 ~~~~~L~~L~Ls~N~-l~~l~----~~~~~~L~~L~Ls~N~-l~~~-----~~~l~~L~~L~Ls~N~-l~--~ip~-~~~ 471 (549)
T 2z81_A 407 QWPEKMRFLNLSSTG-IRVVK----TCIPQTLEVLDVSNNN-LDSF-----SLFLPRLQELYISRNK-LK--TLPD-ASL 471 (549)
T ss_dssp CCCTTCCEEECTTSC-CSCCC----TTSCTTCSEEECCSSC-CSCC-----CCCCTTCCEEECCSSC-CS--SCCC-GGG
T ss_pred cccccccEEECCCCC-ccccc----chhcCCceEEECCCCC-hhhh-----cccCChhcEEECCCCc-cC--cCCC-ccc
Confidence 335666666666663 33210 0012577777777753 5432 2367889999998875 43 2222 246
Q ss_pred CCCCcEEEecceeeec
Q 007312 576 CANIKKVMVEKWKVSE 591 (608)
Q Consensus 576 ~~~L~~l~l~~~~~~~ 591 (608)
+++|+.|++++|+++.
T Consensus 472 l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 472 FPVLLVMKISRNQLKS 487 (549)
T ss_dssp CTTCCEEECCSSCCCC
T ss_pred CccCCEEecCCCccCC
Confidence 7899999999998875
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3.5e-21 Score=194.41 Aligned_cols=345 Identities=20% Similarity=0.164 Sum_probs=233.9
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (608)
+++++.|++.++. +.. ++. +..+++|++|++++|.+..... ...+++|++|+++++....... ....+
T Consensus 45 l~~l~~L~l~~~~-i~~--l~~-~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-----~~~l~ 112 (466)
T 1o6v_A 45 LDQVTTLQADRLG-IKS--IDG-VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-----LANLT 112 (466)
T ss_dssp HHTCCEEECCSSC-CCC--CTT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GTTCT
T ss_pred hccccEEecCCCC-Ccc--Ccc-hhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh-----hcCCC
Confidence 4689999998763 222 222 4578999999999998765332 3458999999999875333222 22348
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcE
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 296 (608)
+|++|++++| .+..... ...+++|++|++++|.+.... ....+++|+.|+++.. +.... . ...+++|++
T Consensus 113 ~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~-~~~~~--~-~~~l~~L~~ 181 (466)
T 1o6v_A 113 NLTGLTLFNN-QITDIDP---LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQ-VTDLK--P-LANLTTLER 181 (466)
T ss_dssp TCCEEECCSS-CCCCCGG---GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEES-CCCCG--G-GTTCTTCCE
T ss_pred CCCEEECCCC-CCCCChH---HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCCc-ccCch--h-hccCCCCCE
Confidence 9999999998 4544322 478999999999998876643 2457899999999643 22211 1 345899999
Q ss_pred EEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEe
Q 007312 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 376 (608)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 376 (608)
|+++++. +... .. ...+++|++|+++++....... ...+++|++|+++++. +... .. ...+++|+.|+
T Consensus 182 L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~ 249 (466)
T 1o6v_A 182 LDISSNK-VSDI--SV-LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDI--GT-LASLTNLTDLD 249 (466)
T ss_dssp EECCSSC-CCCC--GG-GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEE
T ss_pred EECcCCc-CCCC--hh-hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccc--hh-hhcCCCCCEEE
Confidence 9998754 3332 12 3458999999999887322221 3467999999999864 3332 22 23579999999
Q ss_pred cccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecc
Q 007312 377 LLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLR 456 (608)
Q Consensus 377 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 456 (608)
++++ .+..... ...+++|+.|+++++. ++.. .. ...+++|+.|++++|. +..... ...+++|+.|+++
T Consensus 250 l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 250 LANN-QISNLAP---LSGLTKLTELKLGANQ-ISNI--SP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLY 317 (466)
T ss_dssp CCSS-CCCCCGG---GTTCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECC
T ss_pred CCCC-ccccchh---hhcCCCCCEEECCCCc-cCcc--cc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECc
Confidence 9984 4443322 4578999999999864 3331 11 4568899999998874 332221 4568899999998
Q ss_pred cCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccccc
Q 007312 457 FCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCR 536 (608)
Q Consensus 457 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~ 536 (608)
+|. +.+.. .+..+++|+.|++++| .++.. . ....+++|+.|++++| .+++... ...+++|+.|++++|+
T Consensus 318 ~n~-l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 318 FNN-ISDIS--PVSSLTKLQRLFFYNN-KVSDV--S-SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp SSC-CSCCG--GGGGCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred CCc-CCCch--hhccCccCCEeECCCC-ccCCc--h-hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 865 44332 2567778999999886 44432 2 2346888888988888 4554432 3458888888888875
Q ss_pred CccH
Q 007312 537 QITD 540 (608)
Q Consensus 537 ~l~~ 540 (608)
++.
T Consensus 387 -~~~ 389 (466)
T 1o6v_A 387 -WTN 389 (466)
T ss_dssp -EEC
T ss_pred -ccC
Confidence 443
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=8.2e-21 Score=184.32 Aligned_cols=303 Identities=15% Similarity=0.113 Sum_probs=164.5
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCc
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 295 (608)
++|++|+++++ .+... .. ...+++|++|+++++.+..... +..+++|++|+++++.+... .. ...+++|+
T Consensus 44 ~~L~~L~l~~~-~i~~~--~~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~ 113 (347)
T 4fmz_A 44 ESITKLVVAGE-KVASI--QG-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SA-LQNLTNLR 113 (347)
T ss_dssp TTCSEEECCSS-CCCCC--TT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCS
T ss_pred ccccEEEEeCC-ccccc--hh-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc--hH-HcCCCcCC
Confidence 78888888876 33322 11 3567888888888777665432 44567777777776655442 11 22345555
Q ss_pred EEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceE
Q 007312 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (608)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (608)
+|++.+ +....... ...+++|++|+++++....... . ...+++|++|
T Consensus 114 ~L~l~~--------------------------n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L 160 (347)
T 4fmz_A 114 ELYLNE--------------------------DNISDISP----LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYL 160 (347)
T ss_dssp EEECTT--------------------------SCCCCCGG----GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEE
T ss_pred EEECcC--------------------------CcccCchh----hccCCceeEEECCCCCCccccc--c-hhhCCCCcEE
Confidence 555554 33111100 2234445555544432222211 1 2234555555
Q ss_pred ecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEec
Q 007312 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (608)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (608)
+++++ .+..... ...+++|+.|++++|. +... .. ...+++|+.|+++++. +..... ...+++|++|++
T Consensus 161 ~l~~~-~~~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l 228 (347)
T 4fmz_A 161 TVTES-KVKDVTP---IANLTDLYSLSLNYNQ-IEDI--SP-LASLTSLHYFTAYVNQ-ITDITP---VANMTRLNSLKI 228 (347)
T ss_dssp ECCSS-CCCCCGG---GGGCTTCSEEECTTSC-CCCC--GG-GGGCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEEC
T ss_pred EecCC-CcCCchh---hccCCCCCEEEccCCc-cccc--cc-ccCCCccceeecccCC-CCCCch---hhcCCcCCEEEc
Confidence 55542 2222111 2345666666666542 2221 11 3446666666666652 222111 345677777777
Q ss_pred ccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccc
Q 007312 456 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 535 (608)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 535 (608)
++|. +.+... +..+++|++|++++| .++.. . ....+++|++|++++| .+++. .....+++|+.|++++|
T Consensus 229 ~~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 229 GNNK-ITDLSP--LANLSQLTWLEIGTN-QISDI--N-AVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNN 297 (347)
T ss_dssp CSSC-CCCCGG--GTTCTTCCEEECCSS-CCCCC--G-GGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS
T ss_pred cCCc-cCCCcc--hhcCCCCCEEECCCC-ccCCC--h-hHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCC
Confidence 7754 333222 556667777777775 34331 1 2345778888888887 45543 12345788888888886
Q ss_pred cCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeee
Q 007312 536 RQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 590 (608)
Q Consensus 536 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 590 (608)
. ++......+. .+++|++|++++|+...... +..+++|++|++++|+++
T Consensus 298 ~-l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 Q-LGNEDMEVIG-GLTNLTTLFLSQNHITDIRP----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C-CCGGGHHHHH-TCTTCSEEECCSSSCCCCGG----GGGCTTCSEESSSCC---
T ss_pred c-CCCcChhHhh-ccccCCEEEccCCccccccC----hhhhhccceeehhhhccc
Confidence 4 6665555554 67888888888876443222 467888888888888875
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=4.8e-25 Score=229.85 Aligned_cols=418 Identities=16% Similarity=0.122 Sum_probs=251.8
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCC--CchHHHHHHhhcC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL--TDTGLVDLAHGCG 215 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~ 215 (608)
++++.|+++++. +.... ...+..+++|++|++++|.+.......+. .+++|++|+++++... ....+. ..
T Consensus 28 ~~l~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-----~l 99 (570)
T 2z63_A 28 FSTKNLDLSFNP-LRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLALGAFS-----GL 99 (570)
T ss_dssp SSCCEEECCSCC-CCEEC-TTTTTTCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTT-----TC
T ss_pred ccccEEEccCCc-cCccC-hhHhhCCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCCccCHhhhc-----Cc
Confidence 479999998763 32211 12356799999999999987653333344 4899999999987421 111221 23
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCC-
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL- 294 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L- 294 (608)
++|++|+++++ .+....... ...+++|++|++++|.+....+...+..+++|++|+++++.+.......+. .+++|
T Consensus 100 ~~L~~L~L~~n-~l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 176 (570)
T 2z63_A 100 SSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMP 176 (570)
T ss_dssp TTCCEEECTTS-CCCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHTCT
T ss_pred ccccccccccc-ccccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHcc-chhccc
Confidence 89999999998 444322111 357899999999999877644444455789999999998887653222221 13445
Q ss_pred ---cEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhc-----------------------------
Q 007312 295 ---ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATG----------------------------- 342 (608)
Q Consensus 295 ---~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------------------------- 342 (608)
+++++.++ .+.......+ . ..+|+.|++.++.. ....+......
T Consensus 177 ~~~~~L~l~~n-~l~~~~~~~~-~-~~~L~~L~l~~n~~-~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 177 LLNLSLDLSLN-PMNFIQPGAF-K-EIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp TCCCEEECTTC-CCCEECTTTT-T-TCEEEEEEEESCCS-CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred hhhhhcccCCC-CceecCHHHh-c-cCcceeEecccccc-cccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 78888763 3332222222 2 23788888876531 11222222222
Q ss_pred ----------------------------CCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhc
Q 007312 343 ----------------------------CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRG 394 (608)
Q Consensus 343 ----------------------------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 394 (608)
+++|++|+++++. +.. +......+ +|++|+++++ .+...+. ..
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~--l~~~~~~~-~L~~L~l~~n-~~~~l~~----~~ 323 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IER--VKDFSYNF-GWQHLELVNC-KFGQFPT----LK 323 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECS--CCBCCSCC-CCSEEEEESC-BCSSCCB----CB
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chh--hhhhhccC-CccEEeeccC-cccccCc----cc
Confidence 3445555554432 111 11111222 5566666553 2221111 24
Q ss_pred CCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHH-HHHHHhcCCCCcEEecccCCcCChHHHHhhhcCC
Q 007312 395 CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNG-IVAVGEHCNSLTELSLRFCDRVGDEALISIGQGC 473 (608)
Q Consensus 395 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 473 (608)
+++|+.|++.++........ ..+++|+.|+++++. +.... .......+++|++|++++|. +...... +..++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~l~ 396 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN-FLGLE 396 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEE-EETCT
T ss_pred ccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-ccccccc-ccccC
Confidence 67777777777532221111 457889999988773 33211 12233467899999999865 3332222 66777
Q ss_pred CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCcc
Q 007312 474 SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRML 553 (608)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 553 (608)
+|++|++++|. ++.......+..+++|++|++++|. +..... .....+++|+.|++++|. +++..+......+++|
T Consensus 397 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 397 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNL 472 (570)
T ss_dssp TCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC
T ss_pred CCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCc-CccccchhhhhcccCC
Confidence 89999999864 3322111233568999999999984 443222 223458999999999975 5532222334568999
Q ss_pred CeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecc
Q 007312 554 ESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 554 ~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
++|++++|. ++... +..+..+++|+.|++++|+++..
T Consensus 473 ~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 473 TFLDLSQCQ-LEQLS-PTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp CEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSCCSCC
T ss_pred CEEECCCCc-cccCC-hhhhhcccCCCEEeCCCCcCCCC
Confidence 999999986 33221 22346789999999999988754
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=1.6e-20 Score=182.33 Aligned_cols=104 Identities=25% Similarity=0.306 Sum_probs=50.5
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
.+++|++|++++|. +.+. ..+..+++|+.|++++| .++.. ..+..+++|+.|++++| .+++.....+. .++
T Consensus 241 ~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~ 311 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQ-ISDI--NAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEVIG-GLT 311 (347)
T ss_dssp TCTTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCGGGHHHHH-TCT
T ss_pred cCCCCCEEECCCCc-cCCC--hhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCC-cCCCcChhHhh-ccc
Confidence 34555555555532 2221 23444455555555554 23321 11234566666666666 35444433333 356
Q ss_pred CcceeecccccCccHHHHHHHHHcCCccCeeecccCC
Q 007312 526 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 526 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 562 (608)
+|+.|++++|+ +++... ...+++|++|++++|+
T Consensus 312 ~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 312 NLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp TCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred cCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 66666666654 443322 2345666666666654
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.4e-23 Score=223.38 Aligned_cols=215 Identities=16% Similarity=0.053 Sum_probs=123.5
Q ss_pred CcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCC
Q 007312 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (608)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (608)
+++|+.|++++ +.+..........++++|+.|++++|. +... ....+..+++|+.|+++++.-............++
T Consensus 404 l~~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 404 LGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYNK-YLQL-TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp CTTCCEEECCS-SCCEEECCSGGGTTCTTCCEEECCSCS-EEEC-CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred CCCCCEEeCCC-CcCccccCcccccCcccccEEecCCCC-ccee-ChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 45666666655 222211000112345666666666542 1110 01112346667777776653111111112234578
Q ss_pred CCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHH-------HHHhhCCCCcEEeecCCCCCChHHHHHHh
Q 007312 449 SLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIM-------AIAKGCPELNYLDVSVLQNLGDQAMVELG 521 (608)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 521 (608)
+|+.|++++|. +.......+..+++|+.|++++|. ++..... ..+..+++|+.|++++| .++.... ...
T Consensus 481 ~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~ 556 (680)
T 1ziw_A 481 NLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV-EVF 556 (680)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT-TTT
T ss_pred CCCEEECCCCC-CCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCH-HHc
Confidence 89999998854 665555566777889999999863 4321100 11356789999999988 4553211 123
Q ss_pred ccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecce
Q 007312 522 KGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSERT 593 (608)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 593 (608)
.++++|+.|+++++ .++..... .+..+++|+.|++++|. ++......+...+++|+.+++++|++....
T Consensus 557 ~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 557 KDLFELKIIDLGLN-NLNTLPAS-VFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ccccCcceeECCCC-CCCcCCHh-HhCCCCCCCEEECCCCc-CCccChhHhcccccccCEEEccCCCcccCC
Confidence 45899999999885 47654333 23468999999999974 443222222125699999999999887644
No 25
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.2e-19 Score=175.32 Aligned_cols=243 Identities=18% Similarity=0.249 Sum_probs=144.6
Q ss_pred cceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcE
Q 007312 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (608)
Q Consensus 269 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 348 (608)
++.++++.+.+.+..+..+.. ++++.|++.+. .+..... . ...+++|++|+++++. ++...+......+++|++
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n-~l~~~~~-~-~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRS-FMDQPLA-E-HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHH--TTCSEEECTTC-EECSCCC-S-CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSE
T ss_pred heeeccccccCCHHHHHhhhh--ccceEEEcCCc-cccccch-h-hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCE
Confidence 455555554444433333221 45555555542 1111100 0 1135777777777765 555556666666777777
Q ss_pred EEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCc-cCcEE
Q 007312 349 LEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQ-NLKKL 427 (608)
Q Consensus 349 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L 427 (608)
|+++++ .+.......+.. +++|++|++++|..+++..+......+++|++|++++|..+++.++......++ +|++|
T Consensus 123 L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 123 LSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 777774 355544444443 677777777775566665566656667777777777765566666666666677 77777
Q ss_pred eccccc-ccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEee
Q 007312 428 HIRRCY-KIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDV 506 (608)
Q Consensus 428 ~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 506 (608)
++++|. .+++..+......+++|++|++++|..+++..+..+..+++|++|++++|..+++.++..+. .+++|+.|++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l 279 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQV 279 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEEC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEec
Confidence 777765 45656666666667777777777765566666666666666777777666555554443332 3666666666
Q ss_pred cCCCCCChHHHHHHhc
Q 007312 507 SVLQNLGDQAMVELGK 522 (608)
Q Consensus 507 ~~~~~l~~~~~~~l~~ 522 (608)
++| +++.++..+..
T Consensus 280 ~~~--i~~~~~~~l~~ 293 (336)
T 2ast_B 280 FGI--VPDGTLQLLKE 293 (336)
T ss_dssp TTS--SCTTCHHHHHH
T ss_pred cCc--cCHHHHHHHHh
Confidence 665 55555555443
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-24 Score=235.92 Aligned_cols=138 Identities=20% Similarity=0.101 Sum_probs=75.0
Q ss_pred cCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcC
Q 007312 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (608)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (608)
.+++|+.|+++++..... .-+..+.++++|++|+|++|.+.......+.. +++|++|+++++... ............
T Consensus 46 ~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~-~~~~~~~~~~~L 122 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLS-DAVLKDGYFRNL 122 (844)
T ss_dssp SCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCS-SCCSTTCCCSSC
T ss_pred ccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCC-cccccCcccccc
Confidence 467888888876632211 11233457788888888888766443344433 778888888876322 100000001122
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchh---hHHHHHhcCCccceeeecccCC
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNK---GVHAVAQGCPLLRVLKLQCINV 279 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~ 279 (608)
++|++|++++| .+........+..+++|++|++++|.+... .+..+. .++|+.|+++.+.+
T Consensus 123 ~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 123 KALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSL 186 (844)
T ss_dssp SSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBS
T ss_pred CCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc--CCccceEECCCCcc
Confidence 77888888877 333322222335678888888877766442 222221 14555555554443
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=2e-21 Score=199.74 Aligned_cols=395 Identities=15% Similarity=0.089 Sum_probs=254.3
Q ss_pred hcCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCC---chHHHHHH
Q 007312 135 DGFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT---DTGLVDLA 211 (608)
Q Consensus 135 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---~~~~~~~~ 211 (608)
..+++|++|+++++ .+... .+..+..+++|++|++++|.+.. .... .+++|++|+++++.... ...+.
T Consensus 42 ~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~--- 112 (520)
T 2z7x_B 42 LSLSKLRILIISHN-RIQYL-DISVFKFNQELEYLDLSHNKLVK-ISCH---PTVNLKHLDLSFNAFDALPICKEFG--- 112 (520)
T ss_dssp TTCTTCCEEECCSS-CCCEE-EGGGGTTCTTCCEEECCSSCCCE-EECC---CCCCCSEEECCSSCCSSCCCCGGGG---
T ss_pred cccccccEEecCCC-ccCCc-ChHHhhcccCCCEEecCCCceee-cCcc---ccCCccEEeccCCccccccchhhhc---
Confidence 45899999999976 33321 13446689999999999998763 1111 48999999999875322 12222
Q ss_pred hhcCCCccEEecCCCCCcChHHHHHHHhcCCCC--CEEECCCCcc--chhhHHHH-------------------------
Q 007312 212 HGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL--ETLSLDSEFI--HNKGVHAV------------------------- 262 (608)
Q Consensus 212 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~------------------------- 262 (608)
..++|++|+++++ .+.... ...+++| ++|++++|.+ .......+
T Consensus 113 --~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 113 --NMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp --GCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred --cCCcceEEEecCc-ccchhh----ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence 2389999999997 555432 2456788 9999988776 22221111
Q ss_pred HhcCCccceeeecccC-------CChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhh--cCCCCCeEecCCCCCCCH
Q 007312 263 AQGCPLLRVLKLQCIN-------VTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGK--GCKKLKNLTLSDCYFLSD 333 (608)
Q Consensus 263 ~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~ 333 (608)
+..+++|+.++++.+. +.. .+.. ...+++|+.|++.++ .+....+..+.. ..++|++|+++++.. ..
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~-l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~ 261 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLS-ILAK-LQTNPKLSNLTLNNI-ETTWNSFIRILQLVWHTTVWYFSISNVKL-QG 261 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHH-HHHG-GGGCTTCCEEEEEEE-EEEHHHHHHHHHHHHTSSCSEEEEEEEEE-ES
T ss_pred hhcccceeeccccccccccccceeec-chhh-hccccchhhcccccc-ccCHHHHHHHHHHhhhCcccEEEeecccc-cC
Confidence 1236778888887664 211 2222 245789999999863 344433333321 257999999987752 10
Q ss_pred HHHHHHH-----hcCCCCcEEEecCCCC-CChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCC
Q 007312 334 MGLEAIA-----TGCKELTHLEINGCHN-IGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCS 407 (608)
Q Consensus 334 ~~~~~~~-----~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 407 (608)
. +.... ..+++|+.++++++.. ++...+..+... ++|+.|+++++ .+..... ...+++|+.|+++++.
T Consensus 262 ~-~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~-~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 262 Q-LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN-MNIKNFTVSGT-RMVHMLC---PSKISPFLHLDFSNNL 335 (520)
T ss_dssp C-CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHT-CCCSEEEEESS-CCCCCCC---CSSCCCCCEEECCSSC
T ss_pred c-cccchhhcccccCceeEeccccccceecchhhhhccccc-CceeEEEcCCC-ccccccc---hhhCCcccEEEeECCc
Confidence 0 11111 3567888888877543 221233333332 67999999984 3433221 1468999999999964
Q ss_pred CCChHHHHHHHhcCccCcEEecccccccCh-HHHHHHHhcCCCCcEEecccCCcCCh-HHHHhhhcCCCccEEEecCCcc
Q 007312 408 SIGDDAICSIAEGCQNLKKLHIRRCYKIGN-NGIVAVGEHCNSLTELSLRFCDRVGD-EALISIGQGCSLQHLNVSGCHQ 485 (608)
Q Consensus 408 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~ 485 (608)
++... ...+..+++|+.|++++| .+.. ..+......+++|++|++++|. +.. .....+..+++|++|++++| .
T Consensus 336 -l~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N-~ 410 (520)
T 2z7x_B 336 -LTDTV-FENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSN-I 410 (520)
T ss_dssp -CCTTT-TTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSS-C
T ss_pred -cChhh-hhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCC-C
Confidence 44321 223356899999999988 4553 2344456678999999999965 544 33334666778999999996 4
Q ss_pred cCHHHHHHHHhhC-CCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 486 IGDAGIMAIAKGC-PELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 486 ~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
++... ...+ ++|+.|++++| .++.. ...+. .+++|+.|++++|. ++..... ....+++|++|++++|+..
T Consensus 411 l~~~~----~~~l~~~L~~L~Ls~N-~l~~i-p~~~~-~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 411 LTDTI----FRCLPPRIKVLDLHSN-KIKSI-PKQVV-KLEALQELNVASNQ-LKSVPDG-IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCGGG----GGSCCTTCCEEECCSS-CCCCC-CGGGG-GCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CCcch----hhhhcccCCEEECCCC-ccccc-chhhh-cCCCCCEEECCCCc-CCccCHH-HhccCCcccEEECcCCCCc
Confidence 55322 2223 69999999999 56621 12223 68999999999974 7743332 2346899999999998866
Q ss_pred CHHHH
Q 007312 565 TAAGV 569 (608)
Q Consensus 565 ~~~~~ 569 (608)
.+-.+
T Consensus 482 c~c~~ 486 (520)
T 2z7x_B 482 CSCPR 486 (520)
T ss_dssp CCHHH
T ss_pred ccCCc
Confidence 54333
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=9.2e-22 Score=198.78 Aligned_cols=211 Identities=16% Similarity=0.063 Sum_probs=112.0
Q ss_pred CCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCC
Q 007312 188 CNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCP 267 (608)
Q Consensus 188 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 267 (608)
.++|++|+++++. +....... ....++|++|+++++....... ...+..+++|++|++++|.+....... +..++
T Consensus 29 ~~~l~~L~Ls~n~-i~~~~~~~--~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~ 103 (455)
T 3v47_A 29 PAHVNYVDLSLNS-IAELNETS--FSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQFLQLETGA-FNGLA 103 (455)
T ss_dssp CTTCCEEECCSSC-CCEECTTT--TSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCTTCEECTTT-TTTCT
T ss_pred CCccCEEEecCCc-cCcCChhH--hccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCccCccChhh-ccCcc
Confidence 3678999998763 22211101 1123788888888873211111 122356788888888888776543222 33578
Q ss_pred ccceeeecccCCChHHHHH-HHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHh-cCCC
Q 007312 268 LLRVLKLQCINVTDEALVA-VGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT-GCKE 345 (608)
Q Consensus 268 ~L~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~ 345 (608)
+|++|+++++.+....+.. ....+++|++|+++++ .+.......+...+++|++|+++++.. .......+.. ..++
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcc-cccChhhhhcccccc
Confidence 8888888888776544332 2334678888888763 333322222234477888888877652 1111111110 1256
Q ss_pred CcEEEecCCCCCChh--H--HHHH--HhcCcccceEecccccccChHHHHHHHh--cCCCCcEEEeccC
Q 007312 346 LTHLEINGCHNIGTM--G--LESI--GKFCRNLTELALLYCQRIGNLALLEVGR--GCKSLQALHLVDC 406 (608)
Q Consensus 346 L~~L~l~~~~~~~~~--~--~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~ 406 (608)
|+.|+++++...... . .... ...+++|++|++++ +.+.......+.. ..++|+.|+++++
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG-NGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT-SCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCC-CcccccchhhhhccccccceeeEeeccc
Confidence 777777764321110 0 0000 01235677777776 4454443333322 2366777777665
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=3.4e-22 Score=207.10 Aligned_cols=418 Identities=14% Similarity=0.048 Sum_probs=224.0
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (608)
++|++|+++++. +... .+..+..+++|++|++++|.++......+.. +++|++|+++++.- ...... ..++
T Consensus 52 ~~L~~L~Ls~N~-i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l-~~lp~~-----~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNS-ISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRL-QNISCC-----PMAS 122 (562)
T ss_dssp TTCCEEECCSSC-CCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCC-CEECSC-----CCTT
T ss_pred CCcCEEECCCCC-cccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcC-CccCcc-----cccc
Confidence 588888888763 2221 1123557888999999988876443344433 78899999887642 211100 2378
Q ss_pred ccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCcc--ceeeecccCC--ChHHHHHHH-----
Q 007312 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLL--RVLKLQCINV--TDEALVAVG----- 288 (608)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~----- 288 (608)
|++|+++++ .+.....+..+..+++|++|++++|.+....+. .+++| +.|+++.+.+ .......+.
T Consensus 123 L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 123 LRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL----PVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp CSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTG----GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred CCEEECCCC-CccccCchHhhcccCcccEEecCCCccccCchh----hhhhceeeEEEeecccccccccCcccccccCcc
Confidence 889988887 444322222335778889998888887654322 34455 8888877665 221111110
Q ss_pred --------------------hcCCCCcEEEeccccCCC--hHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHh--cCC
Q 007312 289 --------------------NQCLSLELLALYSFQQFT--DKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIAT--GCK 344 (608)
Q Consensus 289 --------------------~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~ 344 (608)
..+++|+.+++.+..... -.........+++|+.+.+.++. +....+..+.. ..+
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHHHHHHHhhhcc
Confidence 012344455554321000 00111112335666666665544 33333222221 224
Q ss_pred CCcEEEecCCCCCChhHHHHHH-hcCcccceEecccc--cc--cChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHh
Q 007312 345 ELTHLEINGCHNIGTMGLESIG-KFCRNLTELALLYC--QR--IGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAE 419 (608)
Q Consensus 345 ~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~--~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 419 (608)
+|++|+++++...+.. ...+. ...++|+.|.+.+. .. +....+..+. ..++|+.|+++++. +.... ...
T Consensus 277 ~L~~L~l~~n~l~~~i-p~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~-~~~~L~~L~l~~n~-~~~~~---~~~ 350 (562)
T 3a79_B 277 PVEYLNIYNLTITERI-DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTP-FIHMV---CPP 350 (562)
T ss_dssp SEEEEEEEEEEECSCC-CCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH-HTCCCSEEEEESSC-CCCCC---CCS
T ss_pred cccEEEEeccEeeccc-cchhhhcccccchheehhhcccceeecChhhhhhhh-ccCcceEEEccCCC-ccccc---Ccc
Confidence 6677766654311110 00000 00133333333221 11 1112222222 23567888887763 22111 013
Q ss_pred cCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCCh--HHHHhhhcCCCccEEEecCCcccCHHHHHHHHhh
Q 007312 420 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGD--EALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKG 497 (608)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 497 (608)
.+++|++|+++++ .+..... .....+++|++|++++|. +.. .....+..+++|+.|++++|. ++.......+..
T Consensus 351 ~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 426 (562)
T 3a79_B 351 SPSSFTFLNFTQN-VFTDSVF-QGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAW 426 (562)
T ss_dssp SCCCCCEEECCSS-CCCTTTT-TTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCC
T ss_pred CCCCceEEECCCC-ccccchh-hhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcC
Confidence 5778888888876 3433111 122457888888888854 554 233456677788888888754 332111112335
Q ss_pred CCCCcEEeecCCCCCChHHHHHHhccC-CCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHH-HHHc
Q 007312 498 CPELNYLDVSVLQNLGDQAMVELGKGC-PLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVAT-VVSG 575 (608)
Q Consensus 498 ~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~-~~~~ 575 (608)
+++|+.|++++| .+++..+ ..+ ++|+.|++++| .++... ..+. .+++|++|++++|. ++. ++. .+..
T Consensus 427 l~~L~~L~l~~n-~l~~~~~----~~l~~~L~~L~L~~N-~l~~ip-~~~~-~l~~L~~L~L~~N~-l~~--l~~~~~~~ 495 (562)
T 3a79_B 427 AESILVLNLSSN-MLTGSVF----RCLPPKVKVLDLHNN-RIMSIP-KDVT-HLQALQELNVASNQ-LKS--VPDGVFDR 495 (562)
T ss_dssp CTTCCEEECCSS-CCCGGGG----SSCCTTCSEEECCSS-CCCCCC-TTTT-SSCCCSEEECCSSC-CCC--CCTTSTTT
T ss_pred cccCCEEECCCC-CCCcchh----hhhcCcCCEEECCCC-cCcccC-hhhc-CCCCCCEEECCCCC-CCC--CCHHHHhc
Confidence 688888888888 4654322 234 58888888886 466322 1222 67888888888865 332 222 2467
Q ss_pred CCCCcEEEecceeeec
Q 007312 576 CANIKKVMVEKWKVSE 591 (608)
Q Consensus 576 ~~~L~~l~l~~~~~~~ 591 (608)
+++|+.|++++|++..
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 7888888888887764
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=1.5e-22 Score=215.12 Aligned_cols=344 Identities=13% Similarity=0.043 Sum_probs=209.1
Q ss_pred CCccEEecCCCCCcChH----------------HHHHHHh--cCCCCCEEECCCCccchhhHHHHHhcCCccceeeeccc
Q 007312 216 KSLKSLGIAACVKITDV----------------SLEAVGS--HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCI 277 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 277 (608)
++|++|+++++ .++.. .++.... .+++|++|++++|.+..... ..+..+++|+.|+++.+
T Consensus 448 ~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTC
T ss_pred CCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCC
Confidence 78999999887 45541 1222223 78889999998887554333 33446889999999888
Q ss_pred C-CCh-HHHHHHH------hcCCCCcEEEeccccCCChHHHHH--HhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCc
Q 007312 278 N-VTD-EALVAVG------NQCLSLELLALYSFQQFTDKGLHA--VGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELT 347 (608)
Q Consensus 278 ~-~~~-~~~~~l~------~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 347 (608)
. ++. ..+..+. ..+++|++|+++++ .+.. +.. ....+++|+.|+++++. +. .++ ....+++|+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEE--FPASASLQKMVKLGLLDCVHNK-VR--HLE-AFGTNVKLT 598 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCB--CCCHHHHTTCTTCCEEECTTSC-CC--BCC-CCCTTSEES
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCc--cCChhhhhcCCCCCEEECCCCC-cc--cch-hhcCCCcce
Confidence 7 766 3333332 23468999999874 3432 222 33448899999998876 33 222 334568889
Q ss_pred EEEecCCCCCChhHHHHHHhcCcc-cceEecccccccChHHHHHHHhcC--CCCcEEEeccCCCCChHHHHHH---Hh--
Q 007312 348 HLEINGCHNIGTMGLESIGKFCRN-LTELALLYCQRIGNLALLEVGRGC--KSLQALHLVDCSSIGDDAICSI---AE-- 419 (608)
Q Consensus 348 ~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~---~~-- 419 (608)
.|+++++. +.. +......+++ |+.|++++ +.+...+ ...... ++|+.|+++++. +... +..+ ..
T Consensus 599 ~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~-N~L~~lp--~~~~~~~~~~L~~L~Ls~N~-l~g~-ip~l~~~l~~~ 670 (876)
T 4ecn_A 599 DLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSH-NKLKYIP--NIFNAKSVYVMGSVDFSYNK-IGSE-GRNISCSMDDY 670 (876)
T ss_dssp EEECCSSC-CSC--CCTTSCEECTTCCEEECCS-SCCCSCC--SCCCTTCSSCEEEEECCSSC-TTTT-SSSCSSCTTTC
T ss_pred EEECcCCc-ccc--chHHHhhccccCCEEECcC-CCCCcCc--hhhhccccCCCCEEECcCCc-CCCc-cccchhhhccc
Confidence 99998854 331 2221234567 99999988 4454222 111222 448899998863 3221 0000 01
Q ss_pred cCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhc-------CCCccEEEecCCcccCHHHHH
Q 007312 420 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ-------GCSLQHLNVSGCHQIGDAGIM 492 (608)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~~ 492 (608)
.+++|+.|++++| .+... ...+...+++|+.|++++|. +.......+.. +++|+.|++++| .++. +.
T Consensus 671 ~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~--lp 744 (876)
T 4ecn_A 671 KGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS--LS 744 (876)
T ss_dssp CCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC--CC
T ss_pred cCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCcc--ch
Confidence 2358899999887 34422 22334567899999999864 44222222211 227999999986 4552 22
Q ss_pred HHHh--hCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccccc-----CccHHHHHHHHHcCCccCeeecccCCCCC
Q 007312 493 AIAK--GCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCR-----QITDVGLSHLVKNCRMLESCHMVYCPGIT 565 (608)
Q Consensus 493 ~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~~~ 565 (608)
.... .+++|+.|++++| .++. +..-...+++|+.|++++++ .+.......+ ..+++|+.|++++|.. .
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l-~~L~~L~~L~Ls~N~L-~ 819 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGI-TTCPSLIQLQIGSNDI-R 819 (876)
T ss_dssp GGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSCC-C
T ss_pred HHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHH-hcCCCCCEEECCCCCC-C
Confidence 2222 6889999999998 4554 22222368999999997632 2332222233 3689999999998864 3
Q ss_pred HHHHHHHHHcCCCCcEEEecceeeec
Q 007312 566 AAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 566 ~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
. ++.. -.++|+.|++++|++..
T Consensus 820 ~--Ip~~--l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 820 K--VDEK--LTPQLYILDIADNPNIS 841 (876)
T ss_dssp B--CCSC--CCSSSCEEECCSCTTCE
T ss_pred c--cCHh--hcCCCCEEECCCCCCCc
Confidence 2 2211 23789999999998764
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=4.6e-23 Score=223.33 Aligned_cols=426 Identities=16% Similarity=0.077 Sum_probs=218.4
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHH-HHHHHhhCCCCceeecCCCCCCC--chHHHHHHhh
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG-LAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAHG 213 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~ 213 (608)
.+++++|+++++ .+... .+..+.++++|++|++++|...... ...+ ..+++|++|+++++.... ...+ .
T Consensus 23 p~~l~~LdLs~N-~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~l~~~~p~~~-----~ 94 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSKIYFLHPDAF-----Q 94 (844)
T ss_dssp CTTCCEEEEESC-CCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCCCCEECTTSS-----C
T ss_pred CCCcCEEECCCC-cCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCcCcccCHhHc-----c
Confidence 469999999976 33321 1223567899999999999533222 2233 348999999999874221 1122 1
Q ss_pred cCCCccEEecCCCCCcChHHH-HHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCCh---HHHHHHHh
Q 007312 214 CGKSLKSLGIAACVKITDVSL-EAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD---EALVAVGN 289 (608)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~ 289 (608)
..++|++|++++| .+....+ ......+++|++|++++|.+........+..+++|+.|+++.+.+.. ..+..+..
T Consensus 95 ~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 2389999999998 4443111 11236789999999999988765554456689999999999887654 33333322
Q ss_pred cCCCCcEEEeccccCCChHHHHHHhhcCC------CCCeEecCCCCCCCHHHHHHHHh--cCCCCcEEEecCC-------
Q 007312 290 QCLSLELLALYSFQQFTDKGLHAVGKGCK------KLKNLTLSDCYFLSDMGLEAIAT--GCKELTHLEINGC------- 354 (608)
Q Consensus 290 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~------- 354 (608)
++|+.|++.++. +.......+. .++ +|+.|+++++. ++......+.. ..++++.|.+...
T Consensus 174 --~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 174 --KTLSFFSLAANS-LYSRVSVDWG-KCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp --CSSCCCEECCSB-SCCCCCCCCC-SSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred --CccceEECCCCc-cccccccchh-hcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceeccccccccccc
Confidence 789999998743 3221111111 122 49999999875 22221111111 1245566655421
Q ss_pred -CCCChhHHHHHHh-cCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccc
Q 007312 355 -HNIGTMGLESIGK-FCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRC 432 (608)
Q Consensus 355 -~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 432 (608)
..+.......+.. ..++|+.|++++ +.+.... ......+++|+.|+++++. ++.. ....+.++++|+.|+++++
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~-n~l~~~~-~~~~~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSH-GFVFSLN-SRVFETLKDLKVLNLAYNK-INKI-ADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTT-CCCCEEC-SCCSSSCCCCCEEEEESCC-CCEE-CTTTTTTCSSCCEEEEESC
T ss_pred ccccCCCChhhhhccccCCccEEECCC-CcccccC-hhhhhcCCCCCEEECCCCc-CCCC-ChHHhcCCCCCCEEECCCC
Confidence 0011110001100 125666666665 2332221 1112345666666666642 3221 1112244666666666665
Q ss_pred cccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCC--
Q 007312 433 YKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQ-- 510 (608)
Q Consensus 433 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-- 510 (608)
. +.... ......+++|+.|++++|. +.......+..+++|+.|++++|. ++.. ..+++|+.|++++|.
T Consensus 325 ~-l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i------~~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 325 L-LGELY-SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA-LTTI------HFIPSIPDIFLSGNKLV 394 (844)
T ss_dssp C-CSCCC-SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC-SCCC------SSCCSCSEEEEESCCCC
T ss_pred C-CCccC-HHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC-CCcc------cCCCCcchhccCCCCcc
Confidence 2 22110 0112245666666666643 443333344555566666666642 3210 114555555555542
Q ss_pred -----------------CCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCH---HHHH
Q 007312 511 -----------------NLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITA---AGVA 570 (608)
Q Consensus 511 -----------------~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~---~~~~ 570 (608)
.+++.........+|+|+.|+++++. ++..........+++|+.|++++|..... ....
T Consensus 395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccch
Confidence 22222112222245666666666543 33221111122345566666655432100 0000
Q ss_pred HHHHcCCCCcEEEecceeeec
Q 007312 571 TVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 571 ~~~~~~~~L~~l~l~~~~~~~ 591 (608)
..+.++++|+.|++++|.++.
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTT
T ss_pred hhhcCcccccEEECCCCcccc
Confidence 113345666666666666553
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=8.2e-22 Score=204.19 Aligned_cols=418 Identities=14% Similarity=0.051 Sum_probs=251.6
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (608)
|...+.++++++ .+.. ++.. -.++|++|++++|.+.......+. .+++|++|+++++. +....... ....+
T Consensus 30 ~~~~~~l~ls~~-~L~~--ip~~--~~~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~-l~~~~~~~--~~~l~ 100 (562)
T 3a79_B 30 NELESMVDYSNR-NLTH--VPKD--LPPRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNR-IRSLDFHV--FLFNQ 100 (562)
T ss_dssp ---CCEEECTTS-CCCS--CCTT--SCTTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCC-CCEECTTT--TTTCT
T ss_pred cCCCcEEEcCCC-CCcc--CCCC--CCCCcCEEECCCCCccccChhhhc-cCCCccEEECCCCC-CCcCCHHH--hCCCC
Confidence 345578888765 3322 2211 137999999999988754434444 48999999999874 22211111 11238
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCC--
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL-- 294 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L-- 294 (608)
+|++|+++++ .++..+.. .+++|++|++++|.+........+..+++|+.|+++.+.+....+.. +++|
T Consensus 101 ~L~~L~Ls~N-~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~L~L 171 (562)
T 3a79_B 101 DLEYLDVSHN-RLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP----VAHLHL 171 (562)
T ss_dssp TCCEEECTTS-CCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGG----GTTSCE
T ss_pred CCCEEECCCC-cCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhh----hhhcee
Confidence 9999999998 45532211 68999999999998876544345557899999999999887644332 4555
Q ss_pred cEEEeccccCC-ChHHHHHH-------------------------hhcCCCCCeEecCCCCCCCHH---HHHHHHhcCCC
Q 007312 295 ELLALYSFQQF-TDKGLHAV-------------------------GKGCKKLKNLTLSDCYFLSDM---GLEAIATGCKE 345 (608)
Q Consensus 295 ~~L~l~~~~~~-~~~~~~~~-------------------------~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~ 345 (608)
++|++.++... .......+ ...+++|+.++++++.. ... ........+++
T Consensus 172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE-NCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCST-THHHHHHHHHHHHSCSS
T ss_pred eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccccc-ccchHHHHHHHHhccCc
Confidence 99999874320 11100000 11234566666665431 111 11122345677
Q ss_pred CcEEEecCCCCCChhHHHHHHh--cCcccceEecccccccC-hHHHHHHHhcCCCCcEEEec---cCC-CCChHHHHHHH
Q 007312 346 LTHLEINGCHNIGTMGLESIGK--FCRNLTELALLYCQRIG-NLALLEVGRGCKSLQALHLV---DCS-SIGDDAICSIA 418 (608)
Q Consensus 346 L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~---~~~-~~~~~~~~~~~ 418 (608)
|+.|.+.++. +....+..+.. ..++|++|+++++. +. ..+...+....++|+.|.+. .+. .+....+..+.
T Consensus 251 L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~ 328 (562)
T 3a79_B 251 LLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328 (562)
T ss_dssp CEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH
T ss_pred ceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccE-eeccccchhhhcccccchheehhhcccceeecChhhhhhhh
Confidence 7777776632 33333332221 23578888877642 22 11100000001444444443 321 12223333333
Q ss_pred hcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCH-HHHHHHHhh
Q 007312 419 EGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGD-AGIMAIAKG 497 (608)
Q Consensus 419 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~ 497 (608)
. .++|++|+++++. +....+ ...+++|++|++++|. +.+..+..+..+++|+.|++++| .++. ..+...+..
T Consensus 329 ~-~~~L~~L~l~~n~-~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 329 A-EMNIKMLSISDTP-FIHMVC---PPSPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKN 401 (562)
T ss_dssp H-TCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTT
T ss_pred c-cCcceEEEccCCC-cccccC---ccCCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcC
Confidence 3 4679999998874 322111 1467999999999964 66666677788889999999996 5553 223344467
Q ss_pred CCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcC-CccCeeecccCCCCCHHHHHHHHHcC
Q 007312 498 CPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNC-RMLESCHMVYCPGITAAGVATVVSGC 576 (608)
Q Consensus 498 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~~~~~~ 576 (608)
+++|+.|++++|. ++..........+++|+.|++++|. ++... ...+ ++|+.|++++|. ++. ++..+..+
T Consensus 402 l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----~~~l~~~L~~L~L~~N~-l~~--ip~~~~~l 472 (562)
T 3a79_B 402 MSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNM-LTGSV----FRCLPPKVKVLDLHNNR-IMS--IPKDVTHL 472 (562)
T ss_dssp CTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSC-CCGGG----GSSCCTTCSEEECCSSC-CCC--CCTTTTSS
T ss_pred CCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCC-CCcch----hhhhcCcCCEEECCCCc-Ccc--cChhhcCC
Confidence 8999999999994 5432122223457999999999975 76432 2334 689999999985 542 33333488
Q ss_pred CCCcEEEecceeeec
Q 007312 577 ANIKKVMVEKWKVSE 591 (608)
Q Consensus 577 ~~L~~l~l~~~~~~~ 591 (608)
++|+.|++++|+++.
T Consensus 473 ~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 473 QALQELNVASNQLKS 487 (562)
T ss_dssp CCCSEEECCSSCCCC
T ss_pred CCCCEEECCCCCCCC
Confidence 999999999999884
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=7.8e-23 Score=213.98 Aligned_cols=345 Identities=10% Similarity=0.027 Sum_probs=207.6
Q ss_pred CCccEEecCCCCCcChH----------------HHHHHHh--cCCCCCEEECCCCccchhhHHHHHhcCCccceeeeccc
Q 007312 216 KSLKSLGIAACVKITDV----------------SLEAVGS--HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCI 277 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 277 (608)
++|++|+++++ .++.. .++.... .+++|++|++++|.+..... ..+..+++|+.|+++.+
T Consensus 206 ~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 206 TKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLINVACN 283 (636)
T ss_dssp TTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEECTTC
T ss_pred cCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEECcCC
Confidence 78888888887 35541 0222223 67888999998887654332 33346788999999888
Q ss_pred C-CCh-HHHHHHHh-----cCCCCcEEEeccccCCChHHHHH--HhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcE
Q 007312 278 N-VTD-EALVAVGN-----QCLSLELLALYSFQQFTDKGLHA--VGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTH 348 (608)
Q Consensus 278 ~-~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 348 (608)
. ++. ..+..+.. .+++|++|++.++ .+.. +.. ....+++|+.|+++++..... +. ....+++|++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~--ip-~~~~l~~L~~ 357 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYNQLEGK--LP-AFGSEIKLAS 357 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSCCCEEE--CC-CCEEEEEESE
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCCcCccc--hh-hhCCCCCCCE
Confidence 7 776 44444432 2478899988874 3432 222 334488899999888763101 11 2345678888
Q ss_pred EEecCCCCCChhHHHHHHhcCcc-cceEecccccccChHHHHHHHhc--CCCCcEEEeccCCCCChHHHHHHHh------
Q 007312 349 LEINGCHNIGTMGLESIGKFCRN-LTELALLYCQRIGNLALLEVGRG--CKSLQALHLVDCSSIGDDAICSIAE------ 419 (608)
Q Consensus 349 L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~------ 419 (608)
|+++++. +.. +......+++ |++|++++ +.+...+ ..... +++|+.|+++++. +..... ..+.
T Consensus 358 L~L~~N~-l~~--lp~~l~~l~~~L~~L~Ls~-N~l~~lp--~~~~~~~l~~L~~L~Ls~N~-l~~~~p-~~l~~~~~~~ 429 (636)
T 4eco_A 358 LNLAYNQ-ITE--IPANFCGFTEQVENLSFAH-NKLKYIP--NIFDAKSVSVMSAIDFSYNE-IGSVDG-KNFDPLDPTP 429 (636)
T ss_dssp EECCSSE-EEE--CCTTSEEECTTCCEEECCS-SCCSSCC--SCCCTTCSSCEEEEECCSSC-TTTTTT-CSSCTTCSSC
T ss_pred EECCCCc-ccc--ccHhhhhhcccCcEEEccC-CcCcccc--hhhhhcccCccCEEECcCCc-CCCcch-hhhccccccc
Confidence 8888753 221 1111234567 99999988 4454322 11122 3478899998863 322111 1111
Q ss_pred -cCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcC-------CCccEEEecCCcccCHHHH
Q 007312 420 -GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG-------CSLQHLNVSGCHQIGDAGI 491 (608)
Q Consensus 420 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~ 491 (608)
.+++|+.|+++++ .+... ...+...+++|++|++++|. +.......+... ++|+.|++++| .++. +
T Consensus 430 ~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--l 503 (636)
T 4eco_A 430 FKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTK--L 503 (636)
T ss_dssp CCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCB--C
T ss_pred ccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCc--c
Confidence 3568899999887 34421 12334457899999998864 443222222222 27999999985 4552 2
Q ss_pred HHHH--hhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccccc-----CccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 492 MAIA--KGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCR-----QITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 492 ~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
.... ..+++|+.|++++| .++. +..-...+++|+.|+++++. .+.......+ ..+++|++|++++|..
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l- 578 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-TLCPSLTQLQIGSNDI- 578 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG-GGCSSCCEEECCSSCC-
T ss_pred ChhhhhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHH-hcCCCCCEEECCCCcC-
Confidence 2222 26889999999998 4654 22222358999999996432 2332222233 3688999999998764
Q ss_pred CHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 565 TAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 565 ~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
+. ++.. -.++|+.|++++|++..
T Consensus 579 ~~--ip~~--~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 RK--VNEK--ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CB--CCSC--CCTTCCEEECCSCTTCE
T ss_pred Cc--cCHh--HhCcCCEEECcCCCCcc
Confidence 32 2211 23889999999997764
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.1e-22 Score=212.89 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=48.1
Q ss_pred CCcEEecccCCcCChHHHHhhh--cCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCC-----CCChHHHHHHh
Q 007312 449 SLTELSLRFCDRVGDEALISIG--QGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQ-----NLGDQAMVELG 521 (608)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~l~~~~~~~l~ 521 (608)
+|+.|++++|. +.. ....+. .+++|+.|++++| .++. +...+..+++|+.|++++|+ .+.......+
T Consensus 489 ~L~~L~Ls~N~-l~~-lp~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l- 562 (636)
T 4eco_A 489 LLTSIDLRFNK-LTK-LSDDFRATTLPYLVGIDLSYN-SFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI- 562 (636)
T ss_dssp GCCEEECCSSC-CCB-CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG-
T ss_pred CccEEECcCCc-CCc-cChhhhhccCCCcCEEECCCC-CCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHH-
Confidence 66666666643 332 222333 4556666666664 3332 22222346666666664332 1111111111
Q ss_pred ccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCC
Q 007312 522 KGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 562 (608)
..+++|+.|++++|. ++.... .+ .++|+.|++++|+
T Consensus 563 ~~l~~L~~L~Ls~N~-l~~ip~-~~---~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 563 TLCPSLTQLQIGSND-IRKVNE-KI---TPNISVLDIKDNP 598 (636)
T ss_dssp GGCSSCCEEECCSSC-CCBCCS-CC---CTTCCEEECCSCT
T ss_pred hcCCCCCEEECCCCc-CCccCH-hH---hCcCCEEECcCCC
Confidence 235666666666653 432211 11 2566666666664
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=3.2e-20 Score=185.48 Aligned_cols=346 Identities=16% Similarity=0.118 Sum_probs=157.9
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (608)
+++|++|+++++ .+... + .+..+++|++|++++|.++... + ..+++|++|+++++. +.... ....+
T Consensus 41 l~~L~~L~Ls~n-~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~-l~~~~-----~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDM--T-GIEKLTGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNK-LTNLD-----VTPLT 106 (457)
T ss_dssp HTTCCEEECCSS-CCCCC--T-TGGGCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSC-CSCCC-----CTTCT
T ss_pred cCCCCEEEccCC-CcccC--h-hhcccCCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCC-Cceee-----cCCCC
Confidence 466777777655 22221 1 2446677777777777655421 2 235666666666553 22111 11225
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccC-CChHHHHHHHhcCCCCc
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCIN-VTDEALVAVGNQCLSLE 295 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~ 295 (608)
+|++|+++++ .+.... ...+++|++|++++|.++... ...+++|+.|+++.+. +.... ...+++|+
T Consensus 107 ~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~ 173 (457)
T 3bz5_A 107 KLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLT 173 (457)
T ss_dssp TCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCC
T ss_pred cCCEEECCCC-cCCeec----CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc----cccCCcCC
Confidence 5666666655 233221 244555666666555554421 2234555555555442 11110 11234445
Q ss_pred EEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceE
Q 007312 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (608)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (608)
+|+++++ .++... ...+++|+.|+++++.. +... ...+++|++|+++++. +... + ...+++|+.|
T Consensus 174 ~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N~l-~~~~----l~~l~~L~~L~Ls~N~-l~~i--p--~~~l~~L~~L 238 (457)
T 3bz5_A 174 TLDCSFN-KITELD----VSQNKLLNRLNCDTNNI-TKLD----LNQNIQLTFLDCSSNK-LTEI--D--VTPLTQLTYF 238 (457)
T ss_dssp EEECCSS-CCCCCC----CTTCTTCCEEECCSSCC-SCCC----CTTCTTCSEEECCSSC-CSCC--C--CTTCTTCSEE
T ss_pred EEECCCC-ccceec----cccCCCCCEEECcCCcC-Ceec----cccCCCCCEEECcCCc-cccc--C--ccccCCCCEE
Confidence 5544432 222111 12244444444444431 1110 1223444444444421 1111 0 1123444444
Q ss_pred ecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEec
Q 007312 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (608)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (608)
++++ +.+...+ ...+++|+.|.+++ .+|+.|++++|...+... ...+++|+.|++
T Consensus 239 ~l~~-N~l~~~~----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~L 293 (457)
T 3bz5_A 239 DCSV-NPLTELD----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDV 293 (457)
T ss_dssp ECCS-SCCSCCC----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCC
T ss_pred EeeC-CcCCCcC----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEEC
Confidence 4443 2222211 12233444443332 134444444443222211 134566667766
Q ss_pred ccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccc
Q 007312 456 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 535 (608)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 535 (608)
++|..++... ....+|+.|++++ +++|++|++++| .++.. . ...+++|+.|+++++
T Consensus 294 s~n~~l~~l~----~~~~~L~~L~l~~---------------~~~L~~L~L~~N-~l~~l---~-l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 294 THNTQLYLLD----CQAAGITELDLSQ---------------NPKLVYLYLNNT-ELTEL---D-VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCTTCCEEE----CTTCCCSCCCCTT---------------CTTCCEEECTTC-CCSCC---C-CTTCTTCSEEECCSS
T ss_pred CCCcccceec----cCCCcceEechhh---------------cccCCEEECCCC-ccccc---c-cccCCcCcEEECCCC
Confidence 6655333211 1223455554443 367888888887 45542 1 335788888888874
Q ss_pred cCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeee
Q 007312 536 RQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVS 590 (608)
Q Consensus 536 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 590 (608)
.+++ ++.|+.|.+.++. +... ..+..|+.+++++|.++
T Consensus 350 -~l~~---------l~~L~~L~l~~n~-l~g~------~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 350 -HIQD---------FSSVGKIPALNNN-FEAE------GQTITMPKETLTNNSLT 387 (457)
T ss_dssp -CCCB---------CTTGGGSSGGGTS-EEEE------EEEEECCCBCCBTTBEE
T ss_pred -CCCC---------ccccccccccCCc-EEec------ceeeecCccccccCcEE
Confidence 4653 3566666555432 1110 24566777788888766
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=3.3e-20 Score=185.38 Aligned_cols=322 Identities=17% Similarity=0.124 Sum_probs=166.8
Q ss_pred cCCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcC
Q 007312 136 GFSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCG 215 (608)
Q Consensus 136 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 215 (608)
.+++|++|+++++ .+.... +..+++|++|++++|.+.... + ..+++|++|+++++. +.... ....
T Consensus 62 ~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N~l~~~~---~-~~l~~L~~L~L~~N~-l~~l~-----~~~l 126 (457)
T 3bz5_A 62 KLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSNKLTNLD---V-TPLTKLTYLNCDTNK-LTKLD-----VSQN 126 (457)
T ss_dssp GCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSCCSCCC---C-TTCTTCCEEECCSSC-CSCCC-----CTTC
T ss_pred ccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCCCCceee---c-CCCCcCCEEECCCCc-CCeec-----CCCC
Confidence 4567777777655 232221 445667777777777655421 2 236677777777653 22211 1223
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCc-cchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCC
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 294 (608)
++|++|+++++ .++... ...+++|++|++++|. ++.. .+..+++|+.|+++.+.+.... ...+++|
T Consensus 127 ~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L 193 (457)
T 3bz5_A 127 PLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITELD----VSQNKLL 193 (457)
T ss_dssp TTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCCC----CTTCTTC
T ss_pred CcCCEEECCCC-ccceec----cccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccceec----cccCCCC
Confidence 66777777766 333321 2456677777776663 2222 1234567777777766655522 2345667
Q ss_pred cEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccce
Q 007312 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (608)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (608)
+.|++.++ .++... ...+++|+.|+++++.. +. ++ ...+++|+.|+++++. +.... ...+++|+.
T Consensus 194 ~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l-~~--ip--~~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~ 258 (457)
T 3bz5_A 194 NRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKL-TE--ID--VTPLTQLTYFDCSVNP-LTELD----VSTLSKLTT 258 (457)
T ss_dssp CEEECCSS-CCSCCC----CTTCTTCSEEECCSSCC-SC--CC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCE
T ss_pred CEEECcCC-cCCeec----cccCCCCCEEECcCCcc-cc--cC--ccccCCCCEEEeeCCc-CCCcC----HHHCCCCCE
Confidence 77777653 333221 23366777777776652 22 11 3355677777776643 22211 123566666
Q ss_pred EecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEe
Q 007312 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (608)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (608)
|+++. .+|+.|++++|....... ...+++|+.|++++|...+... ...+.|+.|+
T Consensus 259 L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~-----~~~~~L~~L~ 313 (457)
T 3bz5_A 259 LHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLD-----CQAAGITELD 313 (457)
T ss_dssp EECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEE-----CTTCCCSCCC
T ss_pred EeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceec-----cCCCcceEec
Confidence 66543 245566666554332211 1345667777776664333211 1234555555
Q ss_pred cccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccc
Q 007312 455 LRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSH 534 (608)
Q Consensus 455 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 534 (608)
+++| ++|+.|++++| .++.. . +..+++|+.|++++| .+++ ++.|..|.+.+
T Consensus 314 l~~~--------------~~L~~L~L~~N-~l~~l--~--l~~l~~L~~L~l~~N-~l~~---------l~~L~~L~l~~ 364 (457)
T 3bz5_A 314 LSQN--------------PKLVYLYLNNT-ELTEL--D--VSHNTKLKSLSCVNA-HIQD---------FSSVGKIPALN 364 (457)
T ss_dssp CTTC--------------TTCCEEECTTC-CCSCC--C--CTTCTTCSEEECCSS-CCCB---------CTTGGGSSGGG
T ss_pred hhhc--------------ccCCEEECCCC-ccccc--c--cccCCcCcEEECCCC-CCCC---------ccccccccccC
Confidence 5443 35666777664 34331 1 345667777777766 3443 34555555554
Q ss_pred ccCccHHHHHHHHHcCCccCeeecccC
Q 007312 535 CRQITDVGLSHLVKNCRMLESCHMVYC 561 (608)
Q Consensus 535 c~~l~~~~~~~~~~~~~~L~~L~l~~c 561 (608)
. .+... ..+..|+.++++++
T Consensus 365 n-~l~g~------~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 365 N-NFEAE------GQTITMPKETLTNN 384 (457)
T ss_dssp T-SEEEE------EEEEECCCBCCBTT
T ss_pred C-cEEec------ceeeecCccccccC
Confidence 2 23322 13445566666553
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=3.4e-21 Score=194.66 Aligned_cols=156 Identities=19% Similarity=0.111 Sum_probs=90.0
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCC--chHHHHHHhhcC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLT--DTGLVDLAHGCG 215 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~ 215 (608)
++|++|+++++ .+... .+..+..+++|++|++++|.+...........+++|++|+++++.... ...+. ..
T Consensus 30 ~~l~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l 102 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN-----GL 102 (455)
T ss_dssp TTCCEEECCSS-CCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT-----TC
T ss_pred CccCEEEecCC-ccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc-----Cc
Confidence 68889998875 33321 123456788899999988876422222222337888888888763211 11121 12
Q ss_pred CCccEEecCCCCCcChHHHH-HHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHh-cCCC
Q 007312 216 KSLKSLGIAACVKITDVSLE-AVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGN-QCLS 293 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~~ 293 (608)
++|++|++++| .+....+. .....+++|++|++++|.+.......++..+++|+.|+++++.+.......+.. ..++
T Consensus 103 ~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 103 ANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred ccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 67888888877 44432222 223567788888888777765544444556777777777776654422222211 1245
Q ss_pred CcEEEecc
Q 007312 294 LELLALYS 301 (608)
Q Consensus 294 L~~L~l~~ 301 (608)
|+.|++.+
T Consensus 182 L~~L~l~~ 189 (455)
T 3v47_A 182 FTLLRLSS 189 (455)
T ss_dssp EEEEECTT
T ss_pred cccccccc
Confidence 56666654
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.9e-21 Score=205.21 Aligned_cols=320 Identities=14% Similarity=0.119 Sum_probs=188.2
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCc-cchhhHHHHH-------hcCCccceeeecccCCChHHHH-H
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEF-IHNKGVHAVA-------QGCPLLRVLKLQCINVTDEALV-A 286 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~-~ 286 (608)
++|++|++++|...... +..+..+++|++|++++|. ++...++..+ ..+++|+.|+++.+.+.. ... .
T Consensus 491 ~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~ 567 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASA 567 (876)
T ss_dssp TTCCEEEEESCTTCCSC--CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHH
T ss_pred CCCCEEECcCCCCCccC--hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCChh
Confidence 78888888887322221 1333577888888888887 6651222211 234588888888887762 221 1
Q ss_pred HHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCC-CcEEEecCCCCCChhHHHHH
Q 007312 287 VGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE-LTHLEINGCHNIGTMGLESI 365 (608)
Q Consensus 287 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l 365 (608)
....+++|+.|+++++ .+.. +. ....+++|+.|+++++.. . .+......+++ |+.|+++++. +.. ++..
T Consensus 568 ~l~~L~~L~~L~Ls~N-~l~~--lp-~~~~L~~L~~L~Ls~N~l-~--~lp~~l~~l~~~L~~L~Ls~N~-L~~--lp~~ 637 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHN-KVRH--LE-AFGTNVKLTDLKLDYNQI-E--EIPEDFCAFTDQVEGLGFSHNK-LKY--IPNI 637 (876)
T ss_dssp HHTTCTTCCEEECTTS-CCCB--CC-CCCTTSEESEEECCSSCC-S--CCCTTSCEECTTCCEEECCSSC-CCS--CCSC
T ss_pred hhhcCCCCCEEECCCC-Cccc--ch-hhcCCCcceEEECcCCcc-c--cchHHHhhccccCCEEECcCCC-CCc--Cchh
Confidence 3345788888888863 3432 22 234478888888888762 2 22222345567 8888888854 332 1111
Q ss_pred HhcC--cccceEecccccccChHHHHHH---H--hcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChH
Q 007312 366 GKFC--RNLTELALLYCQRIGNLALLEV---G--RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNN 438 (608)
Q Consensus 366 ~~~~--~~L~~L~l~~~~~~~~~~~~~~---~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 438 (608)
.... ++|+.|++++ +.+.... ..+ . ..+++|+.|++++|. ++. ....+...+++|+.|++++| .+...
T Consensus 638 ~~~~~~~~L~~L~Ls~-N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~-L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~i 712 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSY-NKIGSEG-RNISCSMDDYKGINASTVTLSYNE-IQK-FPTELFATGSPISTIILSNN-LMTSI 712 (876)
T ss_dssp CCTTCSSCEEEEECCS-SCTTTTS-SSCSSCTTTCCCCCEEEEECCSSC-CCS-CCHHHHHTTCCCSEEECCSC-CCSCC
T ss_pred hhccccCCCCEEECcC-CcCCCcc-ccchhhhccccCCCcCEEEccCCc-CCc-cCHHHHccCCCCCEEECCCC-cCCcc
Confidence 1112 3488888887 4443211 000 0 123588899998863 442 12334456888999999886 33311
Q ss_pred H---HHHH---HhcCCCCcEEecccCCcCChHHHHhhh--cCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCC
Q 007312 439 G---IVAV---GEHCNSLTELSLRFCDRVGDEALISIG--QGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQ 510 (608)
Q Consensus 439 ~---~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 510 (608)
. +... ..++++|+.|++++|. +.. ....+. .+++|+.|++++| .++. +...+..+++|+.|++++|+
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~-lp~~l~~~~l~~L~~L~Ls~N-~L~~--lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNK-LTS-LSDDFRATTLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSC-CCC-CCGGGSTTTCTTCCEEECCSS-CCSS--CCCGGGGCTTCCEEECCCCB
T ss_pred ChHHhccccccccccCCccEEECCCCC-Ccc-chHHhhhccCCCcCEEEeCCC-CCCc--cchhhhcCCCCCEEECCCCC
Confidence 1 1000 1123489999998864 553 334444 6778999999986 4543 33233468999999997743
Q ss_pred -----CCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 511 -----NLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 511 -----~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
.+.......+ ..+++|+.|++++|. ++..... + .++|+.|++++|+..
T Consensus 788 ~ls~N~l~~~ip~~l-~~L~~L~~L~Ls~N~-L~~Ip~~-l---~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 788 DAEGNRILRQWPTGI-TTCPSLIQLQIGSND-IRKVDEK-L---TPQLYILDIADNPNI 840 (876)
T ss_dssp CTTCCBCCCCCCTTG-GGCSSCCEEECCSSC-CCBCCSC-C---CSSSCEEECCSCTTC
T ss_pred CcccccccccChHHH-hcCCCCCEEECCCCC-CCccCHh-h---cCCCCEEECCCCCCC
Confidence 2222211222 358899999999975 5432211 2 368999999998754
No 39
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=2.1e-17 Score=162.54 Aligned_cols=266 Identities=15% Similarity=0.114 Sum_probs=173.1
Q ss_pred hhcCCCCCeEecCCCCCCCHHHHHHHH---hcCCCCcEEEecCCC--CCC---hhHHHHH---HhcCcccceEecccccc
Q 007312 314 GKGCKKLKNLTLSDCYFLSDMGLEAIA---TGCKELTHLEINGCH--NIG---TMGLESI---GKFCRNLTELALLYCQR 382 (608)
Q Consensus 314 ~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~---~~~~~~l---~~~~~~L~~L~l~~~~~ 382 (608)
...+++|++|+++++. ++......+. ..+++|++|+++++. .+. +.++..+ ...+++|++|++++ +.
T Consensus 28 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~ 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD-NA 105 (386)
T ss_dssp HHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS-CC
T ss_pred HhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC-Cc
Confidence 3447899999999886 6666555443 357899999998852 222 1233322 24578999999988 55
Q ss_pred cChH---HHHHHHhcCCCCcEEEeccCCCCChHHHHHHH---hcC---------ccCcEEecccccccChHHHHH---HH
Q 007312 383 IGNL---ALLEVGRGCKSLQALHLVDCSSIGDDAICSIA---EGC---------QNLKKLHIRRCYKIGNNGIVA---VG 444 (608)
Q Consensus 383 ~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~---------~~L~~L~l~~~~~~~~~~~~~---~~ 444 (608)
+... .+...+..+++|++|++++|. ++..+...+. ..+ ++|++|++++| .+++.++.. ..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTF 183 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHH
Confidence 6553 233444678999999998864 5544333333 223 88899999887 566555553 34
Q ss_pred hcCCCCcEEecccCCcCChHHH----H-hhhcCCCccEEEecCCcccCHHHHHHH---HhhCCCCcEEeecCCCCCChHH
Q 007312 445 EHCNSLTELSLRFCDRVGDEAL----I-SIGQGCSLQHLNVSGCHQIGDAGIMAI---AKGCPELNYLDVSVLQNLGDQA 516 (608)
Q Consensus 445 ~~~~~L~~L~l~~~~~~~~~~~----~-~l~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~ 516 (608)
..+++|++|++++|. +++.+. . .+..+++|+.|++++| .+++.+...+ +..+++|+.|++++| .+++.+
T Consensus 184 ~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 260 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARG 260 (386)
T ss_dssp HHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHH
T ss_pred HhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhh
Confidence 467889999998864 665432 2 4556678899998885 4665444333 356788889999888 587776
Q ss_pred HHHHhc-----cCCCcceeecccccCccHHHHHHHH----HcCCccCeeecccCCCCCHHH-HHHHHHcCCCCcEEEecc
Q 007312 517 MVELGK-----GCPLLKDVVLSHCRQITDVGLSHLV----KNCRMLESCHMVYCPGITAAG-VATVVSGCANIKKVMVEK 586 (608)
Q Consensus 517 ~~~l~~-----~~~~L~~L~l~~c~~l~~~~~~~~~----~~~~~L~~L~l~~c~~~~~~~-~~~~~~~~~~L~~l~l~~ 586 (608)
...++. .+++|+.|++++|. ++..++..+. .++++|+.|++++|+...... +..+...+++++.+.+..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 555443 27888888888864 7775443333 347888888888876443322 344444556666555544
Q ss_pred e
Q 007312 587 W 587 (608)
Q Consensus 587 ~ 587 (608)
.
T Consensus 340 ~ 340 (386)
T 2ca6_A 340 L 340 (386)
T ss_dssp C
T ss_pred c
Confidence 3
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=9.1e-17 Score=157.98 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=71.5
Q ss_pred HHHHHHhCCCccEEEccCCccChHHHHHHHh---hCCCCceeecCCCC--CCC---chHHHHHHh--hcCCCccEEecCC
Q 007312 156 LMSLAQKCIHLKSLDLQGCYVGDQGLAAVGK---VCNQLEDLNLRFCE--GLT---DTGLVDLAH--GCGKSLKSLGIAA 225 (608)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~--~~~---~~~~~~~~~--~~~~~L~~L~l~~ 225 (608)
+...+..+++|++|++++|.++......++. .+++|++|+++++. .+. +.++..+.. ...++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3345667888888888888888776666543 46788888887753 121 123332222 1236677777777
Q ss_pred CCCcChH---HHHHHHhcCCCCCEEECCCCccchhhHHHHHhc---C---------CccceeeecccCCCh
Q 007312 226 CVKITDV---SLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG---C---------PLLRVLKLQCINVTD 281 (608)
Q Consensus 226 ~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~---------~~L~~L~l~~~~~~~ 281 (608)
+ .+... .+......+++|++|++++|.++..+...+... + ++|++|+++++.+.+
T Consensus 104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp C-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred C-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 6 34432 223333566777777777776655444333321 2 555555555555543
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=5e-19 Score=174.50 Aligned_cols=315 Identities=16% Similarity=0.140 Sum_probs=136.4
Q ss_pred CCCCceeecCCCCC--CCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhc
Q 007312 188 CNQLEDLNLRFCEG--LTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG 265 (608)
Q Consensus 188 ~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 265 (608)
+++++.|++.++.. ++...+..+ ++|++|+++++ .+....... +..+++|++|+++++.+...... .+..
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l-----~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSF-----RQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPH-VFQN 115 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHC-----CCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCCCCTT-TTTT
T ss_pred cCCceEEEecCCchhhCChhHhccc-----ccCcEEECCCC-cccccChhh-ccCCCCcCEEECCCCCCCcCCHH-HhcC
Confidence 46677777766421 222112221 66777777665 333222111 24556666666666655443221 2234
Q ss_pred CCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 007312 266 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE 345 (608)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 345 (608)
+++|+.|+++++.+..... .+...+++|++|+++++ .+....... ...+++|++|+++++.
T Consensus 116 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~---------------- 176 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNR---------------- 176 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTT-TSSCTTCCEEECCSSC----------------
T ss_pred CCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCC-ccCccChhh-ccCCCCCCEEECCCCc----------------
Confidence 5666666666555442111 11122445555555442 121111111 1223444444444433
Q ss_pred CcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCc
Q 007312 346 LTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLK 425 (608)
Q Consensus 346 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 425 (608)
+.... ...+++|+.|++++ +.+... ...++|+.|+++++. +.... ...+++|+
T Consensus 177 -----------l~~~~----~~~l~~L~~L~l~~-n~l~~~------~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~ 229 (390)
T 3o6n_A 177 -----------LTHVD----LSLIPSLFHANVSY-NLLSTL------AIPIAVEELDASHNS-INVVR----GPVNVELT 229 (390)
T ss_dssp -----------CSBCC----GGGCTTCSEEECCS-SCCSEE------ECCSSCSEEECCSSC-CCEEE----CCCCSSCC
T ss_pred -----------CCccc----cccccccceeeccc-cccccc------CCCCcceEEECCCCe-eeecc----cccccccc
Confidence 11111 11234455555444 222211 122445555555432 22110 01134555
Q ss_pred EEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEe
Q 007312 426 KLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD 505 (608)
Q Consensus 426 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 505 (608)
.|+++++. +... .....+++|++|++++|. +.......+..+++|++|++++| .++.. ......+++|+.|+
T Consensus 230 ~L~l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 230 ILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNN-RLVAL--NLYGQPIPTLKVLD 301 (390)
T ss_dssp EEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSS-CCCEE--ECSSSCCTTCCEEE
T ss_pred EEECCCCC-Cccc---HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCC-cCccc--CcccCCCCCCCEEE
Confidence 55555542 2221 122345566666666542 44444444555556666666654 23221 11112356666666
Q ss_pred ecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHH
Q 007312 506 VSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVV 573 (608)
Q Consensus 506 l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~ 573 (608)
+++| .++.... .+ ..+++|+.|++++|+ ++... ...+++|+.|++++|+ +.......++
T Consensus 302 L~~n-~l~~~~~-~~-~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~-~~~~~~~~~~ 360 (390)
T 3o6n_A 302 LSHN-HLLHVER-NQ-PQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND-WDCNSLRALF 360 (390)
T ss_dssp CCSS-CCCCCGG-GH-HHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC-EEHHHHHHHT
T ss_pred CCCC-cceecCc-cc-cccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC-ccchhHHHHH
Confidence 6666 2332110 01 124566666666643 44332 2245566666666654 3333444333
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=8.6e-21 Score=200.75 Aligned_cols=440 Identities=15% Similarity=0.071 Sum_probs=212.1
Q ss_pred ccHHHHHhcCC-CCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCC--CCc
Q 007312 128 SGLNALADGFS-KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG--LTD 204 (608)
Q Consensus 128 ~~l~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~ 204 (608)
..+..++..+| ++++|+++++ .+... .+..+.++++|++|+|++|.++.-....+. .+++|++|+++++.- ++.
T Consensus 41 ~~l~~vP~~lp~~~~~LdLs~N-~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~-~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 41 LNFYKIPDNLPFSTKNLDLSFN-PLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSSCCSSSCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCEECG
T ss_pred CCcCccCCCCCcCCCEEEeeCC-CCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhc-CCCCCCEEEccCCcCCCCCH
Confidence 33444444454 7888888765 33321 112345778888888888876532222233 377888888887632 111
Q ss_pred hHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCCh---
Q 007312 205 TGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD--- 281 (608)
Q Consensus 205 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--- 281 (608)
..+. ..++|++|++++| .++.... ..+..+++|++|++++|.+........+..+++|++|+++.+.+..
T Consensus 118 ~~f~-----~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 118 GAFS-----GLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp GGGT-----TCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred HHhc-----CCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 1121 1277888888887 3433211 1125678888888888877655444555567888888888776543
Q ss_pred HHHHHHHhcCCCC-----------------------cEEEeccccCCChHHHHHHhhcCCCCCeEecCCCC-----CC--
Q 007312 282 EALVAVGNQCLSL-----------------------ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY-----FL-- 331 (608)
Q Consensus 282 ~~~~~l~~~~~~L-----------------------~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~~-- 331 (608)
..+..+....... +.+.+.+ +.............++.++...+.... .+
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~-n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN-NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES-CCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhc-ccccccccchhhcCCccccccccccccccccccccc
Confidence 2333332211112 2233322 111122233333445555544432110 00
Q ss_pred -CHHHHH-----------------------HHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHH
Q 007312 332 -SDMGLE-----------------------AIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLA 387 (608)
Q Consensus 332 -~~~~~~-----------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 387 (608)
....+. .......+++.+.+.+...... ..+ ..+..++.|++.++. +....
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~-~~~~~L~~L~l~~~~-~~~~~ 344 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---KDF-SYNFGWQHLELVNCK-FGQFP 344 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---GGG-GSCCCCSEEEEESCE-ESSCC
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc---ccc-ccchhhhhhhccccc-ccCcC
Confidence 000000 0001112233333222110000 000 112333444333310 00000
Q ss_pred ---HH---------------HHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcE-----------------------
Q 007312 388 ---LL---------------EVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKK----------------------- 426 (608)
Q Consensus 388 ---~~---------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~----------------------- 426 (608)
+. .....+++|+.|+++++..............+.+|+.
T Consensus 345 ~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 345 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEH 424 (635)
T ss_dssp CCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCE
T ss_pred cccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccc
Confidence 00 0001345666666655321110001111122344444
Q ss_pred EecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEee
Q 007312 427 LHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDV 506 (608)
Q Consensus 427 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 506 (608)
+++..+...... .......+++++.++++++. +.......+...++|+.|++++|..... .....+..+++|+.|++
T Consensus 425 l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~L 501 (635)
T 4g8a_A 425 LDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDL 501 (635)
T ss_dssp EECTTSEEESTT-SSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEEC
T ss_pred hhhhhccccccc-cccccccccccccccccccc-cccccccccccchhhhhhhhhhcccccc-cCchhhhhccccCEEEC
Confidence 444433211110 01112345667777776643 3333334445556788888887643221 11123345788999999
Q ss_pred cCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcC-CCCcEEEec
Q 007312 507 SVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGC-ANIKKVMVE 585 (608)
Q Consensus 507 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~-~~L~~l~l~ 585 (608)
++| .++...... ..++++|++|+|+++ .++......+ ..+++|++|++++|... .... ..+..+ ++|+.|+++
T Consensus 502 s~N-~L~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~Ls~N~l~-~~~~-~~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 502 SQC-QLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFPY-KCLNSLQVLDYSLNHIM-TSKK-QELQHFPSSLAFLNLT 575 (635)
T ss_dssp TTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCBCCCGGG-TTCTTCCEEECTTSCCC-BCCS-SCTTCCCTTCCEEECT
T ss_pred CCC-ccCCcChHH-HcCCCCCCEEECCCC-cCCCCChhHH-hCCCCCCEEECCCCcCC-CCCH-HHHHhhhCcCCEEEee
Confidence 988 455432222 235788999999986 4665443333 46788999999887533 2111 123345 579999999
Q ss_pred ceeeecc
Q 007312 586 KWKVSER 592 (608)
Q Consensus 586 ~~~~~~~ 592 (608)
+|+++-+
T Consensus 576 ~Np~~C~ 582 (635)
T 4g8a_A 576 QNDFACT 582 (635)
T ss_dssp TCCBCCS
T ss_pred CCCCccc
Confidence 8888754
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=2.4e-18 Score=169.62 Aligned_cols=320 Identities=14% Similarity=0.055 Sum_probs=149.1
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCC--CchHHHHHHhhc
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGL--TDTGLVDLAHGC 214 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~ 214 (608)
+++++.|++.++. +... ...++..+++|++|+++++.+.......+.. +++|++|+++++... ....+ ..
T Consensus 44 l~~l~~l~l~~~~-l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-----~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVF-----QN 115 (390)
T ss_dssp GCCCSEEEEESCE-ESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTT-----TT
T ss_pred cCCceEEEecCCc-hhhC-ChhHhcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHh-----cC
Confidence 4678888887652 2211 1234567888888888888765433333333 677777777765311 11111 11
Q ss_pred CCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCC
Q 007312 215 GKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSL 294 (608)
Q Consensus 215 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 294 (608)
.++|++|+++++ .+.... ..+...+++|++|++++|.+...... .+..+++|+.|+++.+.+...
T Consensus 116 l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~------------ 180 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV------------ 180 (390)
T ss_dssp CTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC------------
T ss_pred CCCCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc------------
Confidence 255666666655 232211 11123455555555555544332111 112344444444444433321
Q ss_pred cEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccce
Q 007312 295 ELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTE 374 (608)
Q Consensus 295 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 374 (608)
. ...+++|+.|+++++. ++.. ...++|++|+++++. +..... ...++|+.
T Consensus 181 --------------~----~~~l~~L~~L~l~~n~-l~~~------~~~~~L~~L~l~~n~-l~~~~~----~~~~~L~~ 230 (390)
T 3o6n_A 181 --------------D----LSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNS-INVVRG----PVNVELTI 230 (390)
T ss_dssp --------------C----GGGCTTCSEEECCSSC-CSEE------ECCSSCSEEECCSSC-CCEEEC----CCCSSCCE
T ss_pred --------------c----cccccccceeeccccc-cccc------CCCCcceEEECCCCe-eeeccc----cccccccE
Confidence 1 1124555666655543 1110 112355555555532 111100 11244555
Q ss_pred EecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEe
Q 007312 375 LALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELS 454 (608)
Q Consensus 375 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 454 (608)
|++++ +.+... ..... +++|++|+++++ .+..... .....+++|++|+
T Consensus 231 L~l~~-n~l~~~---~~l~~--------------------------l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 231 LKLQH-NNLTDT---AWLLN--------------------------YPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLY 278 (390)
T ss_dssp EECCS-SCCCCC---GGGGG--------------------------CTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEE
T ss_pred EECCC-CCCccc---HHHcC--------------------------CCCccEEECCCC-cCCCcCh-hHccccccCCEEE
Confidence 55544 222221 11223 444444444443 1221100 1112345566666
Q ss_pred cccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccc
Q 007312 455 LRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSH 534 (608)
Q Consensus 455 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 534 (608)
+++|. +... ......+++|+.|++++|. ++. +......+++|+.|++++|. ++... ...+++|+.|++++
T Consensus 279 L~~n~-l~~~-~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 279 ISNNR-LVAL-NLYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSH 348 (390)
T ss_dssp CCSSC-CCEE-ECSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCS
T ss_pred CCCCc-Cccc-CcccCCCCCCCEEECCCCc-cee--cCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCC
Confidence 65532 3321 1112334567777777653 332 11112346778888888773 54432 23578888888888
Q ss_pred ccCccHHHHHHHHHcCCc
Q 007312 535 CRQITDVGLSHLVKNCRM 552 (608)
Q Consensus 535 c~~l~~~~~~~~~~~~~~ 552 (608)
++ ++......+...++.
T Consensus 349 N~-~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 349 ND-WDCNSLRALFRNVAR 365 (390)
T ss_dssp SC-EEHHHHHHHTTTCCT
T ss_pred CC-ccchhHHHHHHHHHh
Confidence 64 777776666544443
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=3.8e-20 Score=184.78 Aligned_cols=296 Identities=18% Similarity=0.116 Sum_probs=154.5
Q ss_pred CccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCC
Q 007312 165 HLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSL 244 (608)
Q Consensus 165 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 244 (608)
++++|+++++.++. +....++|++|+++++....-. ...++|++|+++++ .+...+ ...++|
T Consensus 72 ~l~~L~l~~~~l~~-----lp~~~~~L~~L~l~~n~l~~lp-------~~~~~L~~L~l~~n-~l~~l~-----~~~~~L 133 (454)
T 1jl5_A 72 QAHELELNNLGLSS-----LPELPPHLESLVASCNSLTELP-------ELPQSLKSLLVDNN-NLKALS-----DLPPLL 133 (454)
T ss_dssp TCSEEECTTSCCSC-----CCSCCTTCSEEECCSSCCSSCC-------CCCTTCCEEECCSS-CCSCCC-----SCCTTC
T ss_pred CCCEEEecCCcccc-----CCCCcCCCCEEEccCCcCCccc-------cccCCCcEEECCCC-ccCccc-----CCCCCC
Confidence 45777777766542 1112356777777665321110 01256777777776 333210 112577
Q ss_pred CEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEe
Q 007312 245 ETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLT 324 (608)
Q Consensus 245 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 324 (608)
++|++++|.+.... . +..+++|++|+++++.+.. +....++|++|++.++ .+.. +.. ...+++|+.|+
T Consensus 134 ~~L~L~~n~l~~lp--~-~~~l~~L~~L~l~~N~l~~-----lp~~~~~L~~L~L~~n-~l~~--l~~-~~~l~~L~~L~ 201 (454)
T 1jl5_A 134 EYLGVSNNQLEKLP--E-LQNSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNN-QLEE--LPE-LQNLPFLTAIY 201 (454)
T ss_dssp CEEECCSSCCSSCC--C-CTTCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSS--CCC-CTTCTTCCEEE
T ss_pred CEEECcCCCCCCCc--c-cCCCCCCCEEECCCCcCcc-----cCCCcccccEEECcCC-cCCc--Ccc-ccCCCCCCEEE
Confidence 77777777665422 2 4456777777777666543 1112356777777663 3322 112 23467777777
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEec
Q 007312 325 LSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLV 404 (608)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 404 (608)
++++.. .. +....++|++|+++++. +.. +.. ...+++|++|++++ +.+...+ ...++|+.|+++
T Consensus 202 l~~N~l-~~-----l~~~~~~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~l~~-N~l~~l~-----~~~~~L~~L~l~ 265 (454)
T 1jl5_A 202 ADNNSL-KK-----LPDLPLSLESIVAGNNI-LEE--LPE-LQNLPFLTTIYADN-NLLKTLP-----DLPPSLEALNVR 265 (454)
T ss_dssp CCSSCC-SS-----CCCCCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCS-SCCSSCC-----SCCTTCCEEECC
T ss_pred CCCCcC-Cc-----CCCCcCcccEEECcCCc-CCc--ccc-cCCCCCCCEEECCC-CcCCccc-----ccccccCEEECC
Confidence 776652 11 11122467777777643 221 112 22457777777776 3343211 124677777777
Q ss_pred cCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcC-CCccEEEecCC
Q 007312 405 DCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG-CSLQHLNVSGC 483 (608)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~ 483 (608)
++. ++. + ....++|+.|++++|. +... ....++|+.|++++|. +.. +... .+|+.|++++|
T Consensus 266 ~N~-l~~--l---~~~~~~L~~L~ls~N~-l~~l-----~~~~~~L~~L~l~~N~-l~~-----i~~~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 266 DNY-LTD--L---PELPQSLTFLDVSENI-FSGL-----SELPPNLYYLNASSNE-IRS-----LCDLPPSLEELNVSNN 327 (454)
T ss_dssp SSC-CSC--C---CCCCTTCCEEECCSSC-CSEE-----SCCCTTCCEEECCSSC-CSE-----ECCCCTTCCEEECCSS
T ss_pred CCc-ccc--c---CcccCcCCEEECcCCc-cCcc-----cCcCCcCCEEECcCCc-CCc-----ccCCcCcCCEEECCCC
Confidence 653 222 1 1124667777777652 3321 0112577777777653 332 2233 36777777774
Q ss_pred cccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccccc
Q 007312 484 HQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCR 536 (608)
Q Consensus 484 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~ 536 (608)
.++. +...+++|+.|++++| .++.. ...+++|+.|+++++.
T Consensus 328 -~l~~-----lp~~~~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 328 -KLIE-----LPALPPRLERLIASFN-HLAEV-----PELPQNLKQLHVEYNP 368 (454)
T ss_dssp -CCSC-----CCCCCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSC
T ss_pred -cccc-----ccccCCcCCEEECCCC-ccccc-----cchhhhccEEECCCCC
Confidence 3332 1223567777777777 34421 1135777777777753
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=8.9e-19 Score=177.79 Aligned_cols=106 Identities=16% Similarity=0.059 Sum_probs=52.4
Q ss_pred CCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCc
Q 007312 189 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 268 (608)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 268 (608)
++++.|+++++. +....... + ...++|++|+++++ .+....... +..+++|++|++++|.+...... .+..+++
T Consensus 32 ~~l~~L~L~~n~-l~~~~~~~-~-~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~ 105 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLNQDE-F-ASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPLG-VFTGLSN 105 (477)
T ss_dssp TTCSEEECCSSC-CCEECTTT-T-TTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCSCCTT-SSTTCTT
T ss_pred CCCcEEECCCCc-cceECHhH-c-cCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCCcCCccCcc-cccCCCC
Confidence 467778877653 22110000 0 11266777777766 333322112 24566777777776665533221 2234566
Q ss_pred cceeeecccCCChHHHHHHHhcCCCCcEEEecc
Q 007312 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYS 301 (608)
Q Consensus 269 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 301 (608)
|+.|+++.+.+.......+ ..+++|++|++.+
T Consensus 106 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~l~~ 137 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMF-QDLYNLKSLEVGD 137 (477)
T ss_dssp CCEEECTTSCCCEECTTTT-TTCTTCCEEEECC
T ss_pred CCEEECCCCccccCChhHc-cccccCCEEECCC
Confidence 6666666665543221111 2355666666654
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=5.2e-18 Score=176.51 Aligned_cols=306 Identities=14% Similarity=0.126 Sum_probs=176.6
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCc
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 295 (608)
++++.+++.++ .+...+ ..++..+++|++|+++++.+....... +..+++|+.|+++++.+.......+ ..+++|+
T Consensus 51 ~~l~~l~l~~~-~l~~lp-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 126 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVF-QNVPLLT 126 (597)
T ss_dssp CCCSEEEESSC-EESEEC-THHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCC
T ss_pred CCceEEEeeCC-CCCCcC-HHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHH-cCCCCCC
Confidence 78999999887 344332 233367899999999998877543333 3468899999998887765333222 3478888
Q ss_pred EEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceE
Q 007312 296 LLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTEL 375 (608)
Q Consensus 296 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 375 (608)
+|+++++ .+... ...+...+++|++|+++++.. .... ...+..+++|++|+++++. +.... ...+++|+.|
T Consensus 127 ~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L 197 (597)
T 3oja_B 127 VLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNNL-ERIE-DDTFQATTSLQNLQLSSNR-LTHVD----LSLIPSLFHA 197 (597)
T ss_dssp EEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCC-CBCC-TTTTTTCTTCCEEECTTSC-CSBCC----GGGCTTCSEE
T ss_pred EEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCCcC-CCCC-hhhhhcCCcCcEEECcCCC-CCCcC----hhhhhhhhhh
Confidence 8888874 33321 112233477888888887752 2111 1122356778888887743 33221 2235777777
Q ss_pred ecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEec
Q 007312 376 ALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSL 455 (608)
Q Consensus 376 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 455 (608)
++++ +.+... ...++|+.|+++++. +.... ....++|+.|++++|. ++.. .....+++|+.|++
T Consensus 198 ~l~~-n~l~~l------~~~~~L~~L~ls~n~-l~~~~----~~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~L 261 (597)
T 3oja_B 198 NVSY-NLLSTL------AIPIAVEELDASHNS-INVVR----GPVNVELTILKLQHNN-LTDT---AWLLNYPGLVEVDL 261 (597)
T ss_dssp ECCS-SCCSEE------ECCTTCSEEECCSSC-CCEEE----CSCCSCCCEEECCSSC-CCCC---GGGGGCTTCSEEEC
T ss_pred hccc-Cccccc------cCCchhheeeccCCc-ccccc----cccCCCCCEEECCCCC-CCCC---hhhccCCCCCEEEC
Confidence 7776 334321 234677777777753 32210 0113567777777663 3321 22345677777777
Q ss_pred ccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccc
Q 007312 456 RFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 535 (608)
Q Consensus 456 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 535 (608)
++|. +....+..+..+++|+.|++++| .++. +......+++|+.|++++|. ++... ..+ ..+++|+.|++++|
T Consensus 262 s~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~-~~l~~L~~L~L~~N 334 (597)
T 3oja_B 262 SYNE-LEKIMYHPFVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNH-LLHVE-RNQ-PQFDRLENLYLDHN 334 (597)
T ss_dssp CSSC-CCEEESGGGTTCSSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSC-CCCCG-GGH-HHHTTCSEEECCSS
T ss_pred CCCc-cCCCCHHHhcCccCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCC-CCccC-ccc-ccCCCCCEEECCCC
Confidence 7743 55555556666667777777774 3332 11122346677777777763 43211 111 23567777777775
Q ss_pred cCccHHHHHHHHHcCCccCeeecccCC
Q 007312 536 RQITDVGLSHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 536 ~~l~~~~~~~~~~~~~~L~~L~l~~c~ 562 (608)
. ++... ...+++|+.|++++|+
T Consensus 335 ~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 335 S-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp C-CCCCC----CCTTCCCSEEECCSSC
T ss_pred C-CCCcC----hhhcCCCCEEEeeCCC
Confidence 4 44332 2345667777776655
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=4.7e-18 Score=176.88 Aligned_cols=318 Identities=16% Similarity=0.099 Sum_probs=216.3
Q ss_pred CCCCceeecCCCC--CCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhc
Q 007312 188 CNQLEDLNLRFCE--GLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQG 265 (608)
Q Consensus 188 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 265 (608)
+++++.|++.++. .++...+..+ ++|++|+++++ .+....... +..+++|++|++++|.+...... .+..
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l-----~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~-~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSF-----RQVELLNLNDL-QIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPH-VFQN 121 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHC-----CCCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCCCCTT-TTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccC-----CCCcEEECCCC-CCCCCChHH-hcCCCCCCEEECCCCcCCCCCHH-HHcC
Confidence 5789999998763 2333223222 89999999998 455432222 35789999999999988764332 3347
Q ss_pred CCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 007312 266 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKE 345 (608)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 345 (608)
+++|+.|+++++.+..... .+...+++|++|+++++ .+....... ...+++|+.|+++++. ++... ...+++
T Consensus 122 l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~----~~~l~~ 193 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNN-NLERIEDDT-FQATTSLQNLQLSSNR-LTHVD----LSLIPS 193 (597)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECTTSC-CSBCC----GGGCTT
T ss_pred CCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCC-cCCCCChhh-hhcCCcCcEEECcCCC-CCCcC----hhhhhh
Confidence 8999999999988774322 22345899999999974 343322222 3448999999999987 33321 345789
Q ss_pred CcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCc
Q 007312 346 LTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLK 425 (608)
Q Consensus 346 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 425 (608)
|+.|+++++. +... ...++|+.|++++ +.+...+. ...++|+.|+++++. ++.. ..+..+++|+
T Consensus 194 L~~L~l~~n~-l~~l------~~~~~L~~L~ls~-n~l~~~~~----~~~~~L~~L~L~~n~-l~~~---~~l~~l~~L~ 257 (597)
T 3oja_B 194 LFHANVSYNL-LSTL------AIPIAVEELDASH-NSINVVRG----PVNVELTILKLQHNN-LTDT---AWLLNYPGLV 257 (597)
T ss_dssp CSEEECCSSC-CSEE------ECCTTCSEEECCS-SCCCEEEC----SCCSCCCEEECCSSC-CCCC---GGGGGCTTCS
T ss_pred hhhhhcccCc-cccc------cCCchhheeeccC-Cccccccc----ccCCCCCEEECCCCC-CCCC---hhhccCCCCC
Confidence 9999999843 3331 2347899999998 44443221 224799999999974 4432 3345689999
Q ss_pred EEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEe
Q 007312 426 KLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLD 505 (608)
Q Consensus 426 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 505 (608)
.|++++| .+..... .....+++|+.|++++|. +... ......+++|+.|++++|. ++. +......+++|+.|+
T Consensus 258 ~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l-~~~~~~l~~L~~L~Ls~N~-l~~--i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 258 EVDLSYN-ELEKIMY-HPFVKMQRLERLYISNNR-LVAL-NLYGQPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLY 330 (597)
T ss_dssp EEECCSS-CCCEEES-GGGTTCSSCCEEECTTSC-CCEE-ECSSSCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEE
T ss_pred EEECCCC-ccCCCCH-HHhcCccCCCEEECCCCC-CCCC-CcccccCCCCcEEECCCCC-CCc--cCcccccCCCCCEEE
Confidence 9999987 4443221 123468999999999964 5442 2233456789999999964 442 222224589999999
Q ss_pred ecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcC
Q 007312 506 VSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNC 550 (608)
Q Consensus 506 l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 550 (608)
+++|. ++... ...+++|+.|++++++ ++......+...+
T Consensus 331 L~~N~-l~~~~----~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~ 369 (597)
T 3oja_B 331 LDHNS-IVTLK----LSTHHTLKNLTLSHND-WDCNSLRALFRNV 369 (597)
T ss_dssp CCSSC-CCCCC----CCTTCCCSEEECCSSC-EEHHHHHHHTTTC
T ss_pred CCCCC-CCCcC----hhhcCCCCEEEeeCCC-CCChhHHHHHHHH
Confidence 99994 55432 3458999999999976 7777776665443
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=1.7e-18 Score=175.72 Aligned_cols=59 Identities=24% Similarity=0.159 Sum_probs=34.4
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
++++.|+++++ .+... .+..+..+++|++|+|++|.+.......+.. +++|++|+++++
T Consensus 32 ~~l~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n 90 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSN 90 (477)
T ss_dssp TTCSEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSS
T ss_pred CCCcEEECCCC-ccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCC
Confidence 47778887765 22221 1223456777888888777765433333333 667777777664
No 49
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=2e-15 Score=146.70 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=157.8
Q ss_pred HHHHhhcCCCCCeEecCCCCCCCHHHH---HHHHhcCC-CCcEEEecCCCCCChhHHHHHHh---c-CcccceEeccccc
Q 007312 310 LHAVGKGCKKLKNLTLSDCYFLSDMGL---EAIATGCK-ELTHLEINGCHNIGTMGLESIGK---F-CRNLTELALLYCQ 381 (608)
Q Consensus 310 ~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~---~-~~~L~~L~l~~~~ 381 (608)
+..+....++|++|+++++. +++... ......++ +|++|+++++ .+...+...+.. . +++|++|++++|
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 90 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN- 90 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-
Confidence 44555545669999999887 444333 23345667 8999999985 455443443332 2 388999999884
Q ss_pred ccChH---HHHHHHhcC-CCCcEEEeccCCCCChHHHHHH---Hhc-CccCcEEecccccccChHHHHHHH---hcCC-C
Q 007312 382 RIGNL---ALLEVGRGC-KSLQALHLVDCSSIGDDAICSI---AEG-CQNLKKLHIRRCYKIGNNGIVAVG---EHCN-S 449 (608)
Q Consensus 382 ~~~~~---~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~~~~~~---~~~~-~ 449 (608)
.++.. .+......+ ++|+.|++++|. +++.....+ ... .++|++|++++| .+++.+...+. ...+ +
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTT
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcc
Confidence 45443 333334445 799999999864 554444333 333 358999999887 56654444432 3444 8
Q ss_pred CcEEecccCCcCChHHHHhh----hcC-CCccEEEecCCcccCHHHHHHHH---hh-CCCCcEEeecCCCCCChHHH---
Q 007312 450 LTELSLRFCDRVGDEALISI----GQG-CSLQHLNVSGCHQIGDAGIMAIA---KG-CPELNYLDVSVLQNLGDQAM--- 517 (608)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~l~~~~~--- 517 (608)
|++|++++|. +++.+...+ ... ++|++|++++| .+++.+...+. .. .++|++|++++| .+++.+.
T Consensus 169 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 245 (362)
T 3goz_A 169 VNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL 245 (362)
T ss_dssp CCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred ccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence 9999999864 555544433 334 48999999985 56654433332 22 468999999998 5766444
Q ss_pred HHHhccCCCcceeeccccc--CccHHHHHHHHHc---CCccCeeecccCC
Q 007312 518 VELGKGCPLLKDVVLSHCR--QITDVGLSHLVKN---CRMLESCHMVYCP 562 (608)
Q Consensus 518 ~~l~~~~~~L~~L~l~~c~--~l~~~~~~~~~~~---~~~L~~L~l~~c~ 562 (608)
..+...+++|+.|++++|. .++..+...+... +++|++|++++++
T Consensus 246 ~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4444567899999999874 3666666665543 5567788888865
No 50
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.65 E-value=7.8e-19 Score=185.74 Aligned_cols=408 Identities=16% Similarity=0.052 Sum_probs=220.8
Q ss_pred CCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCC--CCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcC
Q 007312 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEG--LTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (608)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (608)
+++++|+|++|.++.-....+. .+++|++|+++++.- +.+..+.. .++|++|++++| .+..... ..+..+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~-----L~~L~~L~Ls~N-~l~~l~~-~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQS-----LSHLSTLILTGN-PIQSLAL-GAFSGL 123 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTT-----CTTCCEEECTTC-CCCEECG-GGGTTC
T ss_pred cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcC-----CCCCCEEEccCC-cCCCCCH-HHhcCC
Confidence 4799999999998743333444 489999999998742 22222222 289999999998 4554332 233678
Q ss_pred CCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCC---hHHHHHHhhcCC
Q 007312 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFT---DKGLHAVGKGCK 318 (608)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~ 318 (608)
++|++|++++|.+...... .+..+++|++|+++++.+...........+++|++|++.++ .+. ...+..+.....
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred CCCCEEECCCCcCCCCChh-hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhh
Confidence 9999999999987654322 23468999999999988765444444456899999999874 332 233333332112
Q ss_pred CCCeEecCCCCC----------------------CCHHHHHHHHhcCCCCcEEEecCCCC-----CC---hhHHHH----
Q 007312 319 KLKNLTLSDCYF----------------------LSDMGLEAIATGCKELTHLEINGCHN-----IG---TMGLES---- 364 (608)
Q Consensus 319 ~L~~L~l~~~~~----------------------~~~~~~~~~~~~~~~L~~L~l~~~~~-----~~---~~~~~~---- 364 (608)
....++++.+.. ............++.++...+..... +. ...+..
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 222333332210 11222333344555555554432110 00 000000
Q ss_pred -------------------HHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCC--CChHHHH--------
Q 007312 365 -------------------IGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSS--IGDDAIC-------- 415 (608)
Q Consensus 365 -------------------l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~-------- 415 (608)
....+.+++.+.+... .+... .. ...+.+++.|++.++.. +....+.
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~--~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSV-TIERV--KD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESC-EEEEC--GG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred hhhhhhhhhhcccccchhhhhhhhccccccccccc-ccccc--cc-cccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 0011233444444331 11110 01 12345677777765411 0000000
Q ss_pred -------HHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccC-----------------------CcCChHH
Q 007312 416 -------SIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFC-----------------------DRVGDEA 465 (608)
Q Consensus 416 -------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------------------~~~~~~~ 465 (608)
.....+++|+.|+++++..............+.+|+.+++..+ +......
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 0012367889998887532111111111223455555555443 2222222
Q ss_pred HHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHH
Q 007312 466 LISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSH 545 (608)
Q Consensus 466 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~ 545 (608)
...+..+.+++.++++.+. +... .......+++|+.|++++|.... .........+++|+.|++++|. ++......
T Consensus 438 ~~~~~~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~ 513 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA 513 (635)
T ss_dssp SCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC-CCEECTTT
T ss_pred ccccccccccccccccccc-cccc-cccccccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCc-cCCcChHH
Confidence 2233344456666666542 2211 11223456888888888873221 1111223457999999999974 76554433
Q ss_pred HHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecc
Q 007312 546 LVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 546 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
+ ..+++|++|++++|. ++.... ..+..+++|+.|++++|+++..
T Consensus 514 f-~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 514 F-NSLSSLQVLNMSHNN-FFSLDT-FPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp T-TTCTTCCEEECTTSC-CCBCCC-GGGTTCTTCCEEECTTSCCCBC
T ss_pred H-cCCCCCCEEECCCCc-CCCCCh-hHHhCCCCCCEEECCCCcCCCC
Confidence 4 468999999999975 432211 2246789999999999998754
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=4.6e-17 Score=162.50 Aligned_cols=376 Identities=17% Similarity=0.107 Sum_probs=211.1
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHh------------hCCCCceeecCCCCCCCch
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGK------------VCNQLEDLNLRFCEGLTDT 205 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------------~~~~L~~L~l~~~~~~~~~ 205 (608)
..|++|.++++ .+ ..++..+.++++|++|++++|.+.......+.. ..+++++|+++++.-..-.
T Consensus 11 ~~L~~L~l~~n-~l--~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSS-NL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccchhhhcccC-ch--hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 68899999865 44 356777789999999999987643221111111 1235789999887422111
Q ss_pred HHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHH
Q 007312 206 GLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALV 285 (608)
Q Consensus 206 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 285 (608)
. ..++|++|+++++ .++.. + ...++|++|++++|.+.... ...++|++|+++++.+... +
T Consensus 88 ~-------~~~~L~~L~l~~n-~l~~l--p---~~~~~L~~L~l~~n~l~~l~-----~~~~~L~~L~L~~n~l~~l--p 147 (454)
T 1jl5_A 88 E-------LPPHLESLVASCN-SLTEL--P---ELPQSLKSLLVDNNNLKALS-----DLPPLLEYLGVSNNQLEKL--P 147 (454)
T ss_dssp S-------CCTTCSEEECCSS-CCSSC--C---CCCTTCCEEECCSSCCSCCC-----SCCTTCCEEECCSSCCSSC--C
T ss_pred C-------CcCCCCEEEccCC-cCCcc--c---cccCCCcEEECCCCccCccc-----CCCCCCCEEECcCCCCCCC--c
Confidence 1 2278999999887 34431 1 23578999999988776421 1226899999998877652 2
Q ss_pred HHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHH
Q 007312 286 AVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESI 365 (608)
Q Consensus 286 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 365 (608)
. ...+++|++|+++++ .+.. +....++|++|+++++.. .. +.. ...+++|++|+++++. +.. +
T Consensus 148 ~-~~~l~~L~~L~l~~N-~l~~-----lp~~~~~L~~L~L~~n~l-~~--l~~-~~~l~~L~~L~l~~N~-l~~-----l 210 (454)
T 1jl5_A 148 E-LQNSSFLKIIDVDNN-SLKK-----LPDLPPSLEFIAAGNNQL-EE--LPE-LQNLPFLTAIYADNNS-LKK-----L 210 (454)
T ss_dssp C-CTTCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCC-SS--CCC-CTTCTTCCEEECCSSC-CSS-----C
T ss_pred c-cCCCCCCCEEECCCC-cCcc-----cCCCcccccEEECcCCcC-Cc--Ccc-ccCCCCCCEEECCCCc-CCc-----C
Confidence 3 345789999999874 3332 112346899999998863 22 222 3567899999998854 222 1
Q ss_pred HhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHh
Q 007312 366 GKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGE 445 (608)
Q Consensus 366 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 445 (608)
....++|++|+++++ .+...+ . ...+++|+.|+++++. ++. + ....++|+.|++++|. +.. +..
T Consensus 211 ~~~~~~L~~L~l~~n-~l~~lp--~-~~~l~~L~~L~l~~N~-l~~--l---~~~~~~L~~L~l~~N~-l~~-----l~~ 274 (454)
T 1jl5_A 211 PDLPLSLESIVAGNN-ILEELP--E-LQNLPFLTTIYADNNL-LKT--L---PDLPPSLEALNVRDNY-LTD-----LPE 274 (454)
T ss_dssp CCCCTTCCEEECCSS-CCSSCC--C-CTTCTTCCEEECCSSC-CSS--C---CSCCTTCCEEECCSSC-CSC-----CCC
T ss_pred CCCcCcccEEECcCC-cCCccc--c-cCCCCCCCEEECCCCc-CCc--c---cccccccCEEECCCCc-ccc-----cCc
Confidence 122368999999884 454332 2 3578999999999863 332 1 1235789999998873 332 122
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
..++|+.|++++|. +.... . ..++|+.|++++| .++. +....++|+.|++++| .++. +...++
T Consensus 275 ~~~~L~~L~ls~N~-l~~l~--~--~~~~L~~L~l~~N-~l~~-----i~~~~~~L~~L~Ls~N-~l~~-----lp~~~~ 337 (454)
T 1jl5_A 275 LPQSLTFLDVSENI-FSGLS--E--LPPNLYYLNASSN-EIRS-----LCDLPPSLEELNVSNN-KLIE-----LPALPP 337 (454)
T ss_dssp CCTTCCEEECCSSC-CSEES--C--CCTTCCEEECCSS-CCSE-----ECCCCTTCCEEECCSS-CCSC-----CCCCCT
T ss_pred ccCcCCEEECcCCc-cCccc--C--cCCcCCEEECcCC-cCCc-----ccCCcCcCCEEECCCC-cccc-----ccccCC
Confidence 35789999999864 44311 1 1147999999986 4442 1121258999999998 4553 233468
Q ss_pred CcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHc-------------CCCCcEEEecceeeecc
Q 007312 526 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSG-------------CANIKKVMVEKWKVSER 592 (608)
Q Consensus 526 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~-------------~~~L~~l~l~~~~~~~~ 592 (608)
+|+.|++++|. ++... . .+++|++|++++|+......++..+.. .++|+.|++++|+++..
T Consensus 338 ~L~~L~L~~N~-l~~lp--~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 338 RLERLIASFNH-LAEVP--E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp TCCEEECCSSC-CSCCC--C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred cCCEEECCCCc-ccccc--c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 99999999974 66322 1 468999999998764431011111122 38899999999998864
No 52
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=3e-14 Score=138.39 Aligned_cols=265 Identities=14% Similarity=0.069 Sum_probs=173.8
Q ss_pred eeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHH---HHHhhcCC-CCCeEecCCCCCCCHH---HHHHHHhcC-
Q 007312 272 LKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGL---HAVGKGCK-KLKNLTLSDCYFLSDM---GLEAIATGC- 343 (608)
Q Consensus 272 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~- 343 (608)
+.++.+.++.. +..+....++|++|+++++ .+++... ......++ +|++|+++++. ++.. .+.......
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSC
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccC
Confidence 45566666653 3444555667999999984 3554443 23334477 89999999986 4443 333333333
Q ss_pred CCCcEEEecCCCCCChhHHH---HHHhcC-cccceEecccccccChHHHHHH---Hhc-CCCCcEEEeccCCCCChHHHH
Q 007312 344 KELTHLEINGCHNIGTMGLE---SIGKFC-RNLTELALLYCQRIGNLALLEV---GRG-CKSLQALHLVDCSSIGDDAIC 415 (608)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~---~l~~~~-~~L~~L~l~~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~~~~ 415 (608)
++|++|+++++. +...+.. .....+ ++|++|++++ +.++..+...+ ... .++|++|++++| .+++.+..
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~ 156 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSD 156 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHH
Confidence 899999999964 4433333 333344 7999999998 55655544433 333 469999999996 45543333
Q ss_pred ---HHHhcCc-cCcEEecccccccChHHH---HHHHhcC-CCCcEEecccCCcCChHHHH----hhhcC-CCccEEEecC
Q 007312 416 ---SIAEGCQ-NLKKLHIRRCYKIGNNGI---VAVGEHC-NSLTELSLRFCDRVGDEALI----SIGQG-CSLQHLNVSG 482 (608)
Q Consensus 416 ---~~~~~~~-~L~~L~l~~~~~~~~~~~---~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~ 482 (608)
.....++ +|++|++++| .+++.+. ......+ ++|++|++++|. +++.+.. .+... ++|++|++++
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcC
Confidence 3344455 9999999998 4554443 3334455 499999999965 6664333 34443 4899999999
Q ss_pred CcccCHHHH---HHHHhhCCCCcEEeecCCC--CCChHHHHHHhc---cCCCcceeecccccCccHHHHHHH
Q 007312 483 CHQIGDAGI---MAIAKGCPELNYLDVSVLQ--NLGDQAMVELGK---GCPLLKDVVLSHCRQITDVGLSHL 546 (608)
Q Consensus 483 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~--~l~~~~~~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~ 546 (608)
| .+++.+. ..+...+++|+.|++++|. .+++..+..+.. .+++|+.|++++++ +.+.....+
T Consensus 235 N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~-l~~~~~~~~ 304 (362)
T 3goz_A 235 N-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE-IHPSHSIPI 304 (362)
T ss_dssp S-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB-CCGGGCHHH
T ss_pred C-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc-CCCcchHHH
Confidence 6 5766444 4444668999999999984 377777777654 45778889999964 665543333
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.54 E-value=1.2e-16 Score=153.65 Aligned_cols=204 Identities=16% Similarity=0.072 Sum_probs=101.0
Q ss_pred cccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChH-HHHHHHhcCccCcEEecccccccChHHHHHHHhcCC
Q 007312 370 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDD-AICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (608)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (608)
++|++|++++ +.+...... ....+++|+.|+++++. +... .....+..+++|+.|+++++. +..... ...+
T Consensus 121 ~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~----~~~~ 192 (330)
T 1xku_A 121 KTLQELRVHE-NEITKVRKS-VFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ----GLPP 192 (330)
T ss_dssp TTCCEEECCS-SCCCBBCHH-HHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----SCCT
T ss_pred ccccEEECCC-CcccccCHh-HhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-cccCCc----cccc
Confidence 4555555555 233322211 12345566666665542 2210 111223446666666666552 221100 1125
Q ss_pred CCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcc
Q 007312 449 SLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLK 528 (608)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 528 (608)
+|++|++++|. +.......+..+++|++|++++| .++..... .+..+++|++|++++| .++.. ......+++|+
T Consensus 193 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L~ 266 (330)
T 1xku_A 193 SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNN-KLVKV--PGGLADHKYIQ 266 (330)
T ss_dssp TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSS-CCSSC--CTTTTTCSSCC
T ss_pred cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChh-hccCCCCCCEEECCCC-cCccC--ChhhccCCCcC
Confidence 67777777743 55544555666667777777774 34322111 2234677777777777 34421 11123467777
Q ss_pred eeecccccCccHHHHHHHHH-----cCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEeccee
Q 007312 529 DVVLSHCRQITDVGLSHLVK-----NCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWK 588 (608)
Q Consensus 529 ~L~l~~c~~l~~~~~~~~~~-----~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~ 588 (608)
+|++++|+ ++..+...+.. ..+.|+.|++.+++.......+..+..+++++.+++++|+
T Consensus 267 ~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77777754 55444333321 1356777777776643211111234567778888877764
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=6.7e-16 Score=148.30 Aligned_cols=35 Identities=6% Similarity=-0.109 Sum_probs=16.4
Q ss_pred CCCcEEeecCCCCCChHHH-HHHhccCCCcceeeccc
Q 007312 499 PELNYLDVSVLQNLGDQAM-VELGKGCPLLKDVVLSH 534 (608)
Q Consensus 499 ~~L~~L~l~~~~~l~~~~~-~~l~~~~~~L~~L~l~~ 534 (608)
+.|+.|++++|+ +....+ ......+++++.+++++
T Consensus 293 ~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 293 ASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ccccceEeecCc-ccccccCccccccccceeEEEecc
Confidence 556667776664 222111 11123356677776665
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.50 E-value=2.9e-15 Score=142.60 Aligned_cols=129 Identities=11% Similarity=0.062 Sum_probs=59.2
Q ss_pred CccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCC
Q 007312 421 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 500 (608)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 500 (608)
+++|+.|+++++ .+.......+...+++|++|++++|. +... .....+++|++|++++| .++.... .+..+++
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~ 215 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQVVFAKLKTLDLSSN-KLAFMGP--EFQSAAG 215 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECCCCCTTCCEEECCSS-CCCEECG--GGGGGTT
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Cccc--ccccccccCCEEECCCC-cCCcchh--hhcccCc
Confidence 455555555554 33322222233344556666665543 3322 12223445666666653 3332111 1234566
Q ss_pred CcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeeccc
Q 007312 501 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVY 560 (608)
Q Consensus 501 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 560 (608)
|+.|++++| .++.. ......+++|+.|++++++ ++...+......+++|+.|++.+
T Consensus 216 L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 216 VTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccEEECcCC-cccch--hhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCC
Confidence 666666665 34321 1112335666666666643 44334444444555566555543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.47 E-value=5.6e-15 Score=143.24 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=61.4
Q ss_pred CCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHH--hccC
Q 007312 447 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVEL--GKGC 524 (608)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~ 524 (608)
+++|++|++++|. +.......+..+++|++|++++|. ++... ......+++|+.|++++| .++......+ ....
T Consensus 173 l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 173 LTFLEELEIDASD-LQSYEPKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDT-DLDTFHFSELSTGETN 248 (353)
T ss_dssp CCEEEEEEEEETT-CCEECTTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESC-BCTTCCCC------CC
T ss_pred CCCCCEEECCCCC-cCccCHHHHhccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCC-cccccccccccccccc
Confidence 4555555555532 333333444444556666665532 33221 222233556666666655 2332111111 1124
Q ss_pred CCcceeecccccCccHHHHHHH---HHcCCccCeeecccCCCCCHHHHH-HHHHcCCCCcEEEecceeeec
Q 007312 525 PLLKDVVLSHCRQITDVGLSHL---VKNCRMLESCHMVYCPGITAAGVA-TVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 525 ~~L~~L~l~~c~~l~~~~~~~~---~~~~~~L~~L~l~~c~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~ 591 (608)
+.++.+++.++. +++.++..+ ...+++|++|++++|. ++. ++ .++..+++|++|++++|++..
T Consensus 249 ~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~--i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 249 SLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQ-LKS--VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSC-CCC--CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred chhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCC-CCc--cCHHHHhcCCCCCEEEeeCCCccC
Confidence 455555555542 444433322 2245566666666553 221 11 112455666666666665553
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.47 E-value=4.1e-15 Score=141.58 Aligned_cols=149 Identities=17% Similarity=0.132 Sum_probs=60.0
Q ss_pred hCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcC
Q 007312 162 KCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHC 241 (608)
Q Consensus 162 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 241 (608)
.+++|++|++++|.+.......+.. +++|++|+++++....... ....++|++|++++| .++.. ...
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~-----~~~l~~L~~L~Ls~n-~l~~l------~~~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNN-YVQEL------LVG 98 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTT-CTTCCEEECTTSCCEEEEE-----ETTCTTCCEEECCSS-EEEEE------EEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhC-CCcCCEEECCCCcCCcchh-----hhhcCCCCEEECcCC-ccccc------cCC
Confidence 3445555555555544333333322 4555555555442111110 111144555555554 22211 123
Q ss_pred CCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCC
Q 007312 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (608)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 321 (608)
++|++|++++|.+..... ..+++|+.|+++.+.+.......+ ..+++|++|++++ +.+.......+...+++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccchhh-hccCCCCEEECCC-CCCCcccHHHHhhccCcCC
Confidence 555555555555443221 124455555555554443211111 1234455555544 2222222222222345555
Q ss_pred eEecCCCC
Q 007312 322 NLTLSDCY 329 (608)
Q Consensus 322 ~L~l~~~~ 329 (608)
+|+++++.
T Consensus 173 ~L~L~~N~ 180 (317)
T 3o53_A 173 HLNLQYNF 180 (317)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 55555543
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.46 E-value=3.1e-14 Score=138.01 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=16.0
Q ss_pred CcccceEecccccccChHHHHHHHhcCCCCcEEEeccC
Q 007312 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDC 406 (608)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (608)
+++|++|++++ +.+...+ ..+...+++|+.|+++++
T Consensus 197 l~~L~~L~l~~-n~l~~~~-~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 197 IQNVSHLILHM-KQHILLL-EIFVDVTSSVECLELRDT 232 (353)
T ss_dssp CSEEEEEEEEC-SCSTTHH-HHHHHHTTTEEEEEEESC
T ss_pred cccCCeecCCC-Cccccch-hhhhhhcccccEEECCCC
Confidence 45555555555 3333322 112233455555555553
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=3.6e-16 Score=150.21 Aligned_cols=86 Identities=10% Similarity=-0.032 Sum_probs=36.7
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHh-----hCCCCcEEeecCCCCCChHH-HHH
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAK-----GCPELNYLDVSVLQNLGDQA-MVE 519 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~l~~~~-~~~ 519 (608)
.+++|++|++++|. +.. ....+..+++|+.|++++| .++..+...+.. ..+.|+.|++++|+ +.... ...
T Consensus 239 ~l~~L~~L~L~~N~-l~~-lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~ 314 (332)
T 2ft3_A 239 FLPTLRELHLDNNK-LSR-VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPA 314 (332)
T ss_dssp GCTTCCEEECCSSC-CCB-CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGG
T ss_pred CCCCCCEEECCCCc-Cee-cChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCcc
Confidence 34555555555532 331 1222444455556665553 333222211111 13556677776664 22111 111
Q ss_pred HhccCCCcceeecccc
Q 007312 520 LGKGCPLLKDVVLSHC 535 (608)
Q Consensus 520 l~~~~~~L~~L~l~~c 535 (608)
....+++|+.++++++
T Consensus 315 ~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGTTBCCSTTEEC---
T ss_pred cccccchhhhhhcccc
Confidence 2234567777776664
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=1.3e-16 Score=153.31 Aligned_cols=134 Identities=17% Similarity=0.078 Sum_probs=68.1
Q ss_pred CCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCc
Q 007312 448 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLL 527 (608)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 527 (608)
++|++|++++|. +.......+..+++|+.|++++| .++..... .+..+++|+.|++++| .++.. ......+++|
T Consensus 193 ~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~l--p~~l~~l~~L 266 (332)
T 2ft3_A 193 ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNN-KLSRV--PAGLPDLKLL 266 (332)
T ss_dssp SSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSS-CCCBC--CTTGGGCTTC
T ss_pred CCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCC-cCeec--ChhhhcCccC
Confidence 566666666643 44444445555666777777664 33321111 1234667777777766 34421 1112346777
Q ss_pred ceeecccccCccHHHHHHHHHc-----CCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEeccee
Q 007312 528 KDVVLSHCRQITDVGLSHLVKN-----CRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWK 588 (608)
Q Consensus 528 ~~L~l~~c~~l~~~~~~~~~~~-----~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~ 588 (608)
+.|+++++. ++..+...+... .++|+.|++.+|+.......+..+..+++|+.+++++|+
T Consensus 267 ~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 267 QVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777643 555443333211 355677777776633111122234566777777777663
No 61
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.4e-13 Score=114.46 Aligned_cols=105 Identities=15% Similarity=0.263 Sum_probs=67.6
Q ss_pred CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhcc---CCCcceeecccccCccHHHHHHHHHcC
Q 007312 474 SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKG---CPLLKDVVLSHCRQITDVGLSHLVKNC 550 (608)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~ 550 (608)
.|++|++++|. +++.++..+ ..|++|+.|+|++|..++|.++..+... +++|++|+|++|+.+|+.++..+. .+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 46666666664 666666655 3567777777777766777777666542 356777777777777777776665 46
Q ss_pred CccCeeecccCCCCCHHH--HHHHHHcCCCCcE
Q 007312 551 RMLESCHMVYCPGITAAG--VATVVSGCANIKK 581 (608)
Q Consensus 551 ~~L~~L~l~~c~~~~~~~--~~~~~~~~~~L~~ 581 (608)
++|++|++++|+.+++.+ ...+.+.+|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 777777777777776644 2334455666543
No 62
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=2.5e-13 Score=112.98 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=85.1
Q ss_pred CCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhh---CCCCcEEeecCCCCCChHHHHHHhccC
Q 007312 448 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKG---CPELNYLDVSVLQNLGDQAMVELGKGC 524 (608)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~~~~ 524 (608)
..|++|++++|. +++.++..+..+++|++|++++|..+++.++..+... +++|++|+|++|.+|+|.++..+. .+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 368888888876 8888888888888888888888888888888888752 467999999998889999888886 48
Q ss_pred CCcceeecccccCccHHH--HHHHHHcCCccCe
Q 007312 525 PLLKDVVLSHCRQITDVG--LSHLVKNCRMLES 555 (608)
Q Consensus 525 ~~L~~L~l~~c~~l~~~~--~~~~~~~~~~L~~ 555 (608)
++|++|++++|+.+++.+ ...+-..+|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999999999998888876 3455556777653
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=4.2e-13 Score=138.04 Aligned_cols=114 Identities=13% Similarity=0.021 Sum_probs=60.7
Q ss_pred CCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCc
Q 007312 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSL 218 (608)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L 218 (608)
+++.|+++++ .+.. ++.. -.++|++|++++|.+.. +...+++|++|+++++....-.. ..++|
T Consensus 41 ~l~~L~ls~n-~L~~--lp~~--l~~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l~~lp~-------~l~~L 103 (622)
T 3g06_A 41 GNAVLNVGES-GLTT--LPDC--LPAHITTLVIPDNNLTS-----LPALPPELRTLEVSGNQLTSLPV-------LPPGL 103 (622)
T ss_dssp CCCEEECCSS-CCSC--CCSC--CCTTCSEEEECSCCCSC-----CCCCCTTCCEEEECSCCCSCCCC-------CCTTC
T ss_pred CCcEEEecCC-CcCc--cChh--hCCCCcEEEecCCCCCC-----CCCcCCCCCEEEcCCCcCCcCCC-------CCCCC
Confidence 6788888765 2221 1111 12678888888887652 11136677777777663211110 22667
Q ss_pred cEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 219 KSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 219 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
++|++++| .++... ..+++|+.|++++|.++... ..+++|++|+++.|.+.
T Consensus 104 ~~L~Ls~N-~l~~l~-----~~l~~L~~L~L~~N~l~~lp-----~~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 104 LELSIFSN-PLTHLP-----ALPSGLCKLWIFGNQLTSLP-----VLPPGLQELSVSDNQLA 154 (622)
T ss_dssp CEEEECSC-CCCCCC-----CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCS
T ss_pred CEEECcCC-cCCCCC-----CCCCCcCEEECCCCCCCcCC-----CCCCCCCEEECcCCcCC
Confidence 77777766 333211 13466666666666554311 12355666666555443
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=3.2e-14 Score=146.31 Aligned_cols=113 Identities=20% Similarity=0.079 Sum_probs=62.4
Q ss_pred CCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCc
Q 007312 189 NQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPL 268 (608)
Q Consensus 189 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 268 (608)
.+++.|+++++.-..- .....++|++|++++| .++... ..+++|++|++++|.++.... .+++
T Consensus 40 ~~l~~L~ls~n~L~~l------p~~l~~~L~~L~L~~N-~l~~lp-----~~l~~L~~L~Ls~N~l~~lp~-----~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL------PDCLPAHITTLVIPDN-NLTSLP-----ALPPELRTLEVSGNQLTSLPV-----LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCSCC------CSCCCTTCSEEEECSC-CCSCCC-----CCCTTCCEEEECSCCCSCCCC-----CCTT
T ss_pred CCCcEEEecCCCcCcc------ChhhCCCCcEEEecCC-CCCCCC-----CcCCCCCEEEcCCCcCCcCCC-----CCCC
Confidence 3588888887532111 0111267888888887 344211 246778888888777653221 4667
Q ss_pred cceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCC
Q 007312 269 LRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (608)
Q Consensus 269 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 329 (608)
|++|++++|.+.... ..+++|+.|++.++ .++. +...+++|++|+++++.
T Consensus 103 L~~L~Ls~N~l~~l~-----~~l~~L~~L~L~~N-~l~~-----lp~~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 103 LLELSIFSNPLTHLP-----ALPSGLCKLWIFGN-QLTS-----LPVLPPGLQELSVSDNQ 152 (622)
T ss_dssp CCEEEECSCCCCCCC-----CCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSC
T ss_pred CCEEECcCCcCCCCC-----CCCCCcCEEECCCC-CCCc-----CCCCCCCCCEEECcCCc
Confidence 777777766654411 13466666666652 2221 11124566666666554
No 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=6.9e-12 Score=121.11 Aligned_cols=171 Identities=19% Similarity=0.266 Sum_probs=79.0
Q ss_pred cccceEecccccccChHHHHHHHhc----CCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHh
Q 007312 370 RNLTELALLYCQRIGNLALLEVGRG----CKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGE 445 (608)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 445 (608)
++|++|++++ +.++......+... .++|+.|++++| .+++.++..+...+++|++|++++| .+++.+...+..
T Consensus 72 ~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 4556666655 33444433332211 245555555554 3555555554444555555555554 455444444332
Q ss_pred ----cCCCCcEEecccCCcCChHHHHhh----hcCCCccEEEecCCcccCHHHHHHHH---hhCCCCcEEeecCCCCCCh
Q 007312 446 ----HCNSLTELSLRFCDRVGDEALISI----GQGCSLQHLNVSGCHQIGDAGIMAIA---KGCPELNYLDVSVLQNLGD 514 (608)
Q Consensus 446 ----~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~ 514 (608)
..++|++|++++|. +++.+...+ ...++|++|++++| .+++.+...+. ..+++|+.|++++| .+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 23455555555542 444333332 23344555555553 34444433322 23345555555555 3554
Q ss_pred HHHHHHhc---cCCCcceeecccccCccHHHHHHHH
Q 007312 515 QAMVELGK---GCPLLKDVVLSHCRQITDVGLSHLV 547 (608)
Q Consensus 515 ~~~~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~ 547 (608)
.+...++. ..++|++|++++|+ +++.+...+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~ 260 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE-LSSEGRQVLR 260 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHH
Confidence 44433322 23555555555532 5555544443
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.39 E-value=2.7e-15 Score=142.47 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=55.7
Q ss_pred CcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCC
Q 007312 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (608)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (608)
+++|++|++++ +.+...+.......+++|+.|+++++. +... ....+..+++|++|+++++. +...........++
T Consensus 100 l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 100 LEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELR 175 (306)
T ss_dssp CTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCT
T ss_pred CCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCCc-cccccchhHHhhCc
Confidence 45555555554 222222111112345555566555542 1110 11112335555555555542 22111111223345
Q ss_pred CCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCC
Q 007312 449 SLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 509 (608)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (608)
+|++|++++|. +.......+..+++|++|++++|. ++...... +..+++|+.|++++|
T Consensus 176 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 176 NLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLN 233 (306)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTS
T ss_pred CCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCC
Confidence 56666665542 443333444445555566555532 22111111 123555555555555
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=1.3e-12 Score=123.44 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=68.4
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
.+++|++|++++|. +.+. ..+..+++|++|++++|. ++... . +..+++|+.|++++| .+++... ...++
T Consensus 105 ~l~~L~~L~l~~n~-l~~~--~~l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~ 173 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-ITDV--TPLAGLSNLQVLYLDLNQ-ITNIS--P-LAGLTNLQYLSIGNA-QVSDLTP---LANLS 173 (308)
T ss_dssp TCTTCCEEECTTSC-CCCC--GGGTTCTTCCEEECCSSC-CCCCG--G-GGGCTTCCEEECCSS-CCCCCGG---GTTCT
T ss_pred CCCCCCEEECCCCC-CCCc--hhhcCCCCCCEEECCCCc-cCcCc--c-ccCCCCccEEEccCC-cCCCChh---hcCCC
Confidence 34556666665543 3321 224455556666666642 33211 1 334666666666666 3443221 23466
Q ss_pred CcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 526 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 526 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
+|+.|++++|. +++... ...+++|++|++++|...... . +..+++|+.|++++|+++.
T Consensus 174 ~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 174 KLTTLKADDNK-ISDISP---LASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEEEEEEC
T ss_pred CCCEEECCCCc-cCcChh---hcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccCCeeec
Confidence 77777776653 443322 235677777777776433222 1 3567777777777777765
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.38 E-value=1.8e-14 Score=144.68 Aligned_cols=202 Identities=16% Similarity=0.120 Sum_probs=84.3
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCC
Q 007312 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (608)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (608)
++++.|+++++. +.... ...+..+++|++|+++++ .+.......+ ..+++|++|+|++ +.+...+. ..+..+++
T Consensus 75 ~~l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~ 148 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQ-ADTFRHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFD-NWLTVIPS-GAFEYLSK 148 (452)
T ss_dssp TTCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCS-SCCSBCCT-TTSSSCTT
T ss_pred CCccEEECcCCc-CceEC-HHHcCCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCC-CcCCccCh-hhhcccCC
Confidence 467777777665 22211 111234566777777663 2322211111 2346666666665 33332221 11234556
Q ss_pred CcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccE
Q 007312 398 LQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQH 477 (608)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 477 (608)
|+.|+++++. +... ....+..+++|+.|+++++..+..... .....+++|++|++++|. +... ..+..+++|+.
T Consensus 149 L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L~~ 222 (452)
T 3zyi_A 149 LRELWLRNNP-IESI-PSYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCN-IKDM--PNLTPLVGLEE 222 (452)
T ss_dssp CCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSC-CSSC--CCCTTCTTCCE
T ss_pred CCEEECCCCC-ccee-CHhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCc-cccc--ccccccccccE
Confidence 6666666542 2211 011223355555555555433322111 011234555555555532 2221 22333444555
Q ss_pred EEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccc
Q 007312 478 LNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 535 (608)
Q Consensus 478 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 535 (608)
|++++| .++.... ..+..+++|+.|++++| .++...... ...+++|+.|+++++
T Consensus 223 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 223 LEMSGN-HFPEIRP-GSFHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHN 276 (452)
T ss_dssp EECTTS-CCSEECG-GGGTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS
T ss_pred EECcCC-cCcccCc-ccccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCC
Confidence 555553 2222111 11223455555555554 233221111 123455555555553
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.37 E-value=1.9e-14 Score=143.91 Aligned_cols=227 Identities=17% Similarity=0.152 Sum_probs=104.5
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCC
Q 007312 318 KKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKS 397 (608)
Q Consensus 318 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 397 (608)
++++.|+++++. +..... ..+..+++|++|+++++. +....... ...+++|++|+|++ +.+...+. ..+..+++
T Consensus 64 ~~l~~L~L~~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~ 137 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKV-NSFKHLRHLEILQLSRNH-IRTIEIGA-FNGLANLNTLELFD-NRLTTIPN-GAFVYLSK 137 (440)
T ss_dssp TTCSEEECCSCC-CCEECT-TTTSSCSSCCEEECCSSC-CCEECGGG-GTTCSSCCEEECCS-SCCSSCCT-TTSCSCSS
T ss_pred CCCcEEEccCCc-CCeeCH-HHhhCCCCCCEEECCCCc-CCccChhh-ccCCccCCEEECCC-CcCCeeCH-hHhhcccc
Confidence 567777777765 222111 112356777777777642 33221112 22356777777766 34433221 11234566
Q ss_pred CcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccE
Q 007312 398 LQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQH 477 (608)
Q Consensus 398 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 477 (608)
|+.|+++++. +... ....+..+++|++|+++++..+..... .....+++|++|++++|. +... ..+..+.+|+.
T Consensus 138 L~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L~~ 211 (440)
T 3zyj_A 138 LKELWLRNNP-IESI-PSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCN-LREI--PNLTPLIKLDE 211 (440)
T ss_dssp CCEEECCSCC-CCEE-CTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSC-CSSC--CCCTTCSSCCE
T ss_pred CceeeCCCCc-cccc-CHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCc-Cccc--cccCCCcccCE
Confidence 6777766642 2211 111223456666666665433322111 112335666666666643 3321 23444445666
Q ss_pred EEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeee
Q 007312 478 LNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCH 557 (608)
Q Consensus 478 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 557 (608)
|++++| .++.... ..+..+++|+.|++++| .++......+ ..+++|+.|+++++ .++......+ ..+++|+.|+
T Consensus 212 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~ 285 (440)
T 3zyj_A 212 LDLSGN-HLSAIRP-GSFQGLMHLQKLWMIQS-QIQVIERNAF-DNLQSLVEINLAHN-NLTLLPHDLF-TPLHHLERIH 285 (440)
T ss_dssp EECTTS-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTSS-TTCTTCCEEECTTS-CCCCCCTTTT-SSCTTCCEEE
T ss_pred EECCCC-ccCccCh-hhhccCccCCEEECCCC-ceeEEChhhh-cCCCCCCEEECCCC-CCCccChhHh-ccccCCCEEE
Confidence 666654 3332111 11234556666666655 3433221111 23556666666654 2443222212 2355555555
Q ss_pred cccCC
Q 007312 558 MVYCP 562 (608)
Q Consensus 558 l~~c~ 562 (608)
+.+|+
T Consensus 286 L~~Np 290 (440)
T 3zyj_A 286 LHHNP 290 (440)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 55543
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.35 E-value=1.9e-14 Score=137.36 Aligned_cols=135 Identities=16% Similarity=0.215 Sum_probs=87.4
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
.+++|++|++++|. +. .....+..+++|++|++++|. ++. +...+..+++|++|++++|...+ .... ....++
T Consensus 181 ~l~~L~~L~L~~n~-l~-~lp~~l~~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~-~~p~-~~~~l~ 253 (328)
T 4fcg_A 181 GLVNLQSLRLEWTG-IR-SLPASIANLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALR-NYPP-IFGGRA 253 (328)
T ss_dssp ESTTCCEEEEEEEC-CC-CCCGGGGGCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCC-BCCC-CTTCCC
T ss_pred cCCCCCEEECcCCC-cC-cchHhhcCCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchh-hhHH-HhcCCC
Confidence 46788888888754 44 233456677788888888853 442 22224568888888888874322 2111 123578
Q ss_pred CcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 526 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 526 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
+|+.|++++|+..... ... ...+++|++|++++|+.+.. ++..+..+++|+.+.+..+.+..
T Consensus 254 ~L~~L~L~~n~~~~~~-p~~-~~~l~~L~~L~L~~n~~~~~--iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTL-PLD-IHRLTQLEKLDLRGCVNLSR--LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCCEEECTTCTTCCBC-CTT-GGGCTTCCEEECTTCTTCCC--CCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCEEECCCCCchhhc-chh-hhcCCCCCEEeCCCCCchhh--ccHHHhhccCceEEeCCHHHHHH
Confidence 8899999887644322 222 34688899999998877654 33446788899998888765543
No 71
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.4e-11 Score=118.84 Aligned_cols=191 Identities=20% Similarity=0.243 Sum_probs=127.7
Q ss_pred CCCCcEEEecCCCCCChhHHHHHHhc----CcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHH
Q 007312 343 CKELTHLEINGCHNIGTMGLESIGKF----CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIA 418 (608)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 418 (608)
.+.|++|+++++. ++......+... +++|++|+|++ +.+++.+...+...+++|+.|++++| .+++.+...+.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 3678888888844 666555554432 35888888888 56777777766666778888888886 57776666554
Q ss_pred h----cCccCcEEecccccccChHHHHHHH---hcCCCCcEEecccCCcCChHHHHh----hhcCCCccEEEecCCcccC
Q 007312 419 E----GCQNLKKLHIRRCYKIGNNGIVAVG---EHCNSLTELSLRFCDRVGDEALIS----IGQGCSLQHLNVSGCHQIG 487 (608)
Q Consensus 419 ~----~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~ 487 (608)
. ..++|++|++++| .+++.+...++ ..+++|++|++++|. +++.+... +...++|++|++++| .++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 3 3577888888887 56666655543 456788888888854 77666443 344567888888885 678
Q ss_pred HHHHHHHHh---hCCCCcEEeecCCCCCChHHHHHHhccC-CC---cceee--cccccCccHH
Q 007312 488 DAGIMAIAK---GCPELNYLDVSVLQNLGDQAMVELGKGC-PL---LKDVV--LSHCRQITDV 541 (608)
Q Consensus 488 ~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~---L~~L~--l~~c~~l~~~ 541 (608)
+.+...+.. .+++|++|++++| .+++.+...+.... +. |+.+. +..+ .++..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~~ 285 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCHH
Confidence 776655543 4688888888888 58888877765421 12 66666 5553 24443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=9.4e-14 Score=140.05 Aligned_cols=171 Identities=13% Similarity=0.117 Sum_probs=69.1
Q ss_pred CCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCC
Q 007312 242 KSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLK 321 (608)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 321 (608)
++|++|++++|.+..... ..+++|+.|+++++.+.......+ ..+++|+.|++++ +.+.......+...+++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 99 PSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp TTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCC-CCCCCcChHHHhhhCCccc
Confidence 455555555544433211 123455555555444443221111 1234555555544 2232222223332345555
Q ss_pred eEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEE
Q 007312 322 NLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQAL 401 (608)
Q Consensus 322 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 401 (608)
.|+++++. ++.. .. ...+++|+.|+++++. +..... . ...+++|+.|++++ +.+...+ .....+++|+.|
T Consensus 173 ~L~Ls~N~-l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~-~-~~~l~~L~~L~Ls~-N~l~~lp--~~l~~l~~L~~L 242 (487)
T 3oja_A 173 HLNLQYNF-IYDV--KG-QVVFAKLKTLDLSSNK-LAFMGP-E-FQSAAGVTWISLRN-NKLVLIE--KALRFSQNLEHF 242 (487)
T ss_dssp EEECTTSC-CCEE--EC-CCCCTTCCEEECCSSC-CCEECG-G-GGGGTTCSEEECTT-SCCCEEC--TTCCCCTTCCEE
T ss_pred EEecCCCc-cccc--cc-cccCCCCCEEECCCCC-CCCCCH-h-HcCCCCccEEEecC-CcCcccc--hhhccCCCCCEE
Confidence 55555554 1111 00 0124555666655532 222111 1 12345566666655 3333211 112334555566
Q ss_pred EeccCCCCChHHHHHHHhcCccCcEEec
Q 007312 402 HLVDCSSIGDDAICSIAEGCQNLKKLHI 429 (608)
Q Consensus 402 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l 429 (608)
+++++. +....+......+++|+.+.+
T Consensus 243 ~l~~N~-l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 243 DLRGNG-FHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp ECTTCC-BCHHHHHHHHTTCHHHHHHHH
T ss_pred EcCCCC-CcCcchHHHHHhCCCCcEEec
Confidence 665542 332233344444444444443
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.34 E-value=5.9e-15 Score=140.08 Aligned_cols=59 Identities=24% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHH--HHHHHhhCCCCceeecCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQG--LAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~ 199 (608)
++|++|++.++. +... ....+..+++|++|++++|.+.... ...+.. +++|++|+++++
T Consensus 28 ~~l~~L~L~~n~-l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n 88 (306)
T 2z66_A 28 SSATRLELESNK-LQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFN 88 (306)
T ss_dssp TTCCEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSC
T ss_pred CCCCEEECCCCc-cCcc-CHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCC
Confidence 366666666542 2210 1122345666666666666654221 122222 455666666544
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.33 E-value=7e-14 Score=131.10 Aligned_cols=207 Identities=19% Similarity=0.172 Sum_probs=112.1
Q ss_pred CCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCcc
Q 007312 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (608)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (608)
++|++|+++++ .+.......+ ..+++|++|++++ +.+...... .+..+++|+.|+++++..+.... ...+..+++
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~-~~~~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~ 106 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASF-RACRNLTILWLHS-NVLARIDAA-AFTGLALLEQLDLSDNAQLRSVD-PATFHGLGR 106 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCS-SCCCEECTT-TTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTT
T ss_pred CCceEEEeeCC-cCCccCHHHc-ccCCCCCEEECCC-CccceeCHh-hcCCccCCCEEeCCCCCCccccC-HHHhcCCcC
Confidence 57888888874 3433222222 3467888888877 344432211 12456778888887764233211 122344677
Q ss_pred CcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcE
Q 007312 424 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNY 503 (608)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 503 (608)
|++|+++++. +.... ......+++|++|++++|. +.......+..+++|++|++++| .++..... .+..+++|+.
T Consensus 107 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~ 181 (285)
T 1ozn_A 107 LHTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDR 181 (285)
T ss_dssp CCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCE
T ss_pred CCEEECCCCc-CCEEC-HhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHH-HhcCccccCE
Confidence 7777777663 32211 1112346777777777743 44444444555667777777764 34321111 1234677777
Q ss_pred EeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 504 LDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 504 L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
|++++| .++......+ ..+++|+.|+++++. ++......+ ..+++|+.|++++|+..
T Consensus 182 L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 182 LLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN-LSALPTEAL-APLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CSCCCHHHH-TTCTTCCEEECCSSCEE
T ss_pred EECCCC-cccccCHhHc-cCcccccEeeCCCCc-CCcCCHHHc-ccCcccCEEeccCCCcc
Confidence 777776 3443322222 236677777777753 554433333 35667777777666544
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=6.5e-14 Score=141.24 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=28.2
Q ss_pred CCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCCCCeEecCCCC
Q 007312 266 CPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (608)
Q Consensus 266 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 329 (608)
+++|+.|+++++.+.......+ ..+++|++|+++++. ++.... ...+++|++|+++++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~ 91 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNY 91 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSE
T ss_pred CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCc
Confidence 3467777776666554322222 235566666665422 221110 2235555555555543
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.33 E-value=2.6e-14 Score=135.71 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=20.0
Q ss_pred CCCcEEecccCCcCChHHHHhhhcCCCccEEEecCC
Q 007312 448 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGC 483 (608)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 483 (608)
++|++|++++|. +++. ..+..+++|++|++++|
T Consensus 274 ~~L~~L~Ls~N~-l~~~--p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 274 AKLSVLDLSYNR-LDRN--PSPDELPQVGNLSLKGN 306 (312)
T ss_dssp SEEEEEECCSSC-CCSC--CCTTTSCEEEEEECTTC
T ss_pred CCceEEECCCCC-CCCC--hhHhhCCCCCEEeccCC
Confidence 567777777643 4433 22555666777777774
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.31 E-value=3e-14 Score=135.31 Aligned_cols=259 Identities=17% Similarity=0.074 Sum_probs=156.6
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHH--HhcCcccceEecccccccChHHHHHH-Hh
Q 007312 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESI--GKFCRNLTELALLYCQRIGNLALLEV-GR 393 (608)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 393 (608)
.++|+.|++.++.......+......+ .|....+... .+........ ...+++|++|++++ +.+.......+ ..
T Consensus 42 ~~~L~~l~l~~n~l~~p~~~~~~L~~L-~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 42 GRSLEYLLKRVDTEADLGQFTDIIKSL-SLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLEN-LEVTGTAPPPLLEA 118 (312)
T ss_dssp EEECTTHHHHCCTTCCCHHHHHHHHHC-CCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEE-EBCBSCCCCCSSSC
T ss_pred CCCceeEeecccccccHHHHHHHHhhc-ccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccC-CcccchhHHHHHHh
Confidence 567888888777641122222222211 3344444221 1222111111 11468999999998 44443211111 25
Q ss_pred cCCCCcEEEeccCCCCChH--HHHHHHh-cCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChH-HHHhh
Q 007312 394 GCKSLQALHLVDCSSIGDD--AICSIAE-GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDE-ALISI 469 (608)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l 469 (608)
.+++|+.|+++++. ++.. .+..+.. .+++|++|+++++. +..... .....+++|++|++++|...+.. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC-EQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH-HHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 68999999999863 4432 1222211 13899999999873 432221 12246799999999997533222 23334
Q ss_pred --hcCCCccEEEecCCcccCH--HHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHH
Q 007312 470 --GQGCSLQHLNVSGCHQIGD--AGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSH 545 (608)
Q Consensus 470 --~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~ 545 (608)
..+++|++|++++| .++. .....++..+++|++|++++| .+++.........+++|+.|++++|. ++... ..
T Consensus 196 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip-~~ 271 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP-KG 271 (312)
T ss_dssp CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCC-SS
T ss_pred HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhh-hh
Confidence 66788999999996 5653 223355567899999999999 46553311222346899999999964 66221 11
Q ss_pred HHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecc
Q 007312 546 LVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 546 ~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
+ .++|++|++++|. ++.. +. +..+++|+.|++++|+++..
T Consensus 272 ~---~~~L~~L~Ls~N~-l~~~--p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 L---PAKLSVLDLSYNR-LDRN--PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C---CSEEEEEECCSSC-CCSC--CC-TTTSCEEEEEECTTCTTTCC
T ss_pred c---cCCceEEECCCCC-CCCC--hh-HhhCCCCCEEeccCCCCCCC
Confidence 1 1689999999975 4432 22 56889999999999998764
No 78
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.31 E-value=3.9e-15 Score=141.30 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=34.1
Q ss_pred CCCceeeccccCCCCh-hhHHHHHHhCCCccEEEccC-CccChHHHHHHHhhCCCCceeecCCC
Q 007312 138 SKLEKLSLIWCSNISS-LGLMSLAQKCIHLKSLDLQG-CYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
.++++|++.++ .+.. ..++..+..+++|++|++++ +.+.......+.. +++|++|+++++
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEE
T ss_pred ceEEEEECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCC
Confidence 47778888765 2221 02334455677888888874 5544333333333 666777777654
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.30 E-value=1.6e-13 Score=137.14 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=35.6
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
++++.|+++++ .+....... +..+++|++|++++|.+....... +..+++|+.|+++.+.+.
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNRLT 125 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSSCCS
T ss_pred CCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCCcCC
Confidence 67788888776 344332222 245677777777777665433222 234566666666655544
No 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.30 E-value=1.9e-13 Score=137.13 Aligned_cols=62 Identities=24% Similarity=0.216 Sum_probs=36.5
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
++++.|+++++ .+....... +..+++|++|++++|.+....... +..+++|+.|+++.+.+.
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNWLT 136 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCS
T ss_pred CCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCCCcCC
Confidence 67888888876 444322222 246777888888777665433222 234666666666665544
No 81
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=7.1e-15 Score=139.48 Aligned_cols=87 Identities=13% Similarity=0.040 Sum_probs=43.7
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
.+++|+.|++++|. +... +..+...++|++|++++|. ++.. +...+..+++|++|++++|. ++..... . ..++
T Consensus 219 ~l~~L~~L~L~~N~-l~~~-~~~~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L~Ls~N~-l~~~ip~-~-~~l~ 291 (313)
T 1ogq_A 219 SDKNTQKIHLAKNS-LAFD-LGKVGLSKNLNGLDLRNNR-IYGT-LPQGLTQLKFLHSLNVSFNN-LCGEIPQ-G-GNLQ 291 (313)
T ss_dssp TTSCCSEEECCSSE-ECCB-GGGCCCCTTCCEEECCSSC-CEEC-CCGGGGGCTTCCEEECCSSE-EEEECCC-S-TTGG
T ss_pred cCCCCCEEECCCCc-eeee-cCcccccCCCCEEECcCCc-ccCc-CChHHhcCcCCCEEECcCCc-ccccCCC-C-cccc
Confidence 34556666665543 2211 1123444566666666643 3211 11122346777777777763 3321111 1 3467
Q ss_pred CcceeecccccCcc
Q 007312 526 LLKDVVLSHCRQIT 539 (608)
Q Consensus 526 ~L~~L~l~~c~~l~ 539 (608)
+|+.+++.+++.+.
T Consensus 292 ~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 292 RFDVSAYANNKCLC 305 (313)
T ss_dssp GSCGGGTCSSSEEE
T ss_pred ccChHHhcCCCCcc
Confidence 77778777765443
No 82
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.2e-13 Score=131.90 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=33.0
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
+++++|+++++ .+... +.....+++|++|++++|.+.. +...+..+++|++|+++++.+.
T Consensus 81 ~~l~~L~L~~n-~l~~l--p~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~ 140 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQF--PDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLR 140 (328)
T ss_dssp TTCCEEEEESS-CCSSC--CSCGGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCC
T ss_pred cceeEEEccCC-Cchhc--ChhhhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCCccc
Confidence 67778887776 33321 1112346777777777766552 2222334566666666655544
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.28 E-value=2.6e-13 Score=127.19 Aligned_cols=206 Identities=17% Similarity=0.097 Sum_probs=120.6
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCC
Q 007312 317 CKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCK 396 (608)
Q Consensus 317 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 396 (608)
.++|++|+++++. ++.... .....+++|++|+++++ .+.......+ ..+++|++|+++++..+...... ....++
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~-~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPA-ASFRACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPA-TFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSC-CCEECT-TTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTT-TTTTCT
T ss_pred CCCceEEEeeCCc-CCccCH-HHcccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCCCccccCHH-HhcCCc
Confidence 4678888888775 322111 12245678888888774 3333212222 34678888888774324433211 224578
Q ss_pred CCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCcc
Q 007312 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQ 476 (608)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 476 (608)
+|+.|+++++. ++.. ....+..+++|++|+++++. +..... .....+++|++|++++| .++......+..+++|+
T Consensus 106 ~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 106 RLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNA-LQALPD-DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLD 180 (285)
T ss_dssp TCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCc-CCEE-CHhHhhCCcCCCEEECCCCc-ccccCH-hHhccCCCccEEECCCC-cccccCHHHhcCccccC
Confidence 88888888753 3321 12223457788888888763 332111 11245678888888885 35554445566677788
Q ss_pred EEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccccc
Q 007312 477 HLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCR 536 (608)
Q Consensus 477 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~ 536 (608)
.|++++| .++...... +..+++|+.|++++| .+++.....+ ..+++|+.|++++++
T Consensus 181 ~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 181 RLLLHQN-RVAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEAL-APLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHH-TTCTTCCEEECCSSC
T ss_pred EEECCCC-cccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHc-ccCcccCEEeccCCC
Confidence 8888875 344322222 235788888888887 4554333333 357888888888765
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.26 E-value=2e-11 Score=115.29 Aligned_cols=187 Identities=20% Similarity=0.172 Sum_probs=87.7
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (608)
+++|++|++.++. +.. ++ .+..+++|++|++++|.+.+... ...+++|++|+++++.-..... ....+
T Consensus 40 l~~L~~L~l~~~~-i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IE-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSA-----IAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGG-----GTTCT
T ss_pred cCCcCEEEeeCCC-ccC--ch-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchh-----hcCCC
Confidence 3566677766552 221 11 13456677777777666543222 2335666666666553111111 11124
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcE
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 296 (608)
+|++|++++| .+.... . ...+++|++|++++|.+..... + ..+++|++
T Consensus 108 ~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~---l-------------------------~~l~~L~~ 155 (308)
T 1h6u_A 108 SIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLNQITNISP---L-------------------------AGLTNLQY 155 (308)
T ss_dssp TCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSSCCCCCGG---G-------------------------GGCTTCCE
T ss_pred CCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCCccCcCcc---c-------------------------cCCCCccE
Confidence 5555555554 222211 1 2344455555555444433211 2 23455555
Q ss_pred EEeccccCCChHHHHHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEe
Q 007312 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELA 376 (608)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 376 (608)
|+++++ .+..... ...+++|+.|+++++.. .... . ...+++|++|+++++. +.... . ...+++|+.|+
T Consensus 156 L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~l-~~~~--~-l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~ 223 (308)
T 1h6u_A 156 LSIGNA-QVSDLTP---LANLSKLTTLKADDNKI-SDIS--P-LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVT 223 (308)
T ss_dssp EECCSS-CCCCCGG---GTTCTTCCEEECCSSCC-CCCG--G-GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEE
T ss_pred EEccCC-cCCCChh---hcCCCCCCEEECCCCcc-CcCh--h-hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEE
Confidence 555542 2222111 23356666666666552 2111 1 3456677777777643 32221 1 23467777777
Q ss_pred ccc
Q 007312 377 LLY 379 (608)
Q Consensus 377 l~~ 379 (608)
+++
T Consensus 224 l~~ 226 (308)
T 1h6u_A 224 LTN 226 (308)
T ss_dssp EEE
T ss_pred ccC
Confidence 776
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.25 E-value=4e-13 Score=127.45 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=91.9
Q ss_pred cCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHH---hhhcCCCccEEEecCCcccCH--HHHHHH
Q 007312 420 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALI---SIGQGCSLQHLNVSGCHQIGD--AGIMAI 494 (608)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~~~~--~~~~~~ 494 (608)
.+++|++|++++|. +.... ......+++|++|++++|...++..+. .+..+++|++|++++| .++. .....+
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAAL 219 (310)
T ss_dssp BCSCCCEEEEECCS-SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHH
T ss_pred hccCCCEEEeeCCC-cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHH
Confidence 35555555555542 21111 011234567777777775433222221 1235567888888875 4542 222334
Q ss_pred HhhCCCCcEEeecCCCCCChHHHHHHhc--cCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHH
Q 007312 495 AKGCPELNYLDVSVLQNLGDQAMVELGK--GCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATV 572 (608)
Q Consensus 495 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~ 572 (608)
+..+++|++|++++| .+++.....+.. .+++|++|++++|. ++... ..+ .++|++|++++|. ++.. + .
T Consensus 220 ~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp-~~~---~~~L~~L~Ls~N~-l~~~--~-~ 289 (310)
T 4glp_A 220 AAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVP-KGL---PAKLRVLDLSSNR-LNRA--P-Q 289 (310)
T ss_dssp HHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCC-SCC---CSCCSCEECCSCC-CCSC--C-C
T ss_pred HhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCC-CCchh-hhh---cCCCCEEECCCCc-CCCC--c-h
Confidence 456788888888888 455432111111 13789999998864 66321 111 3789999998875 3321 1 1
Q ss_pred HHcCCCCcEEEecceeeecc
Q 007312 573 VSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 573 ~~~~~~L~~l~l~~~~~~~~ 592 (608)
...+++|+.|++++|++++.
T Consensus 290 ~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp TTSCCCCSCEECSSTTTSCC
T ss_pred hhhCCCccEEECcCCCCCCC
Confidence 35789999999999998764
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=1.9e-12 Score=122.79 Aligned_cols=161 Identities=17% Similarity=0.114 Sum_probs=89.6
Q ss_pred CCCceeeccccCCCChhhHHHHHH--hCCCccEEEccCCccChHHHHHHH-hhCCCCceeecCCCCCCCch-HHHHHHhh
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQ--KCIHLKSLDLQGCYVGDQGLAAVG-KVCNQLEDLNLRFCEGLTDT-GLVDLAHG 213 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 213 (608)
..++.+.+..+ .+....+..+.. .+++|++|++++|.+.......+. ..+++|++|+++++...... ........
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 35777777765 444444433322 356799999988876544433332 34788888888876432211 11122222
Q ss_pred cCCCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhh-HH--HHHhcCCccceeeecccCCCh--HHHHHHH
Q 007312 214 CGKSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKG-VH--AVAQGCPLLRVLKLQCINVTD--EALVAVG 288 (608)
Q Consensus 214 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~--~~~~~l~ 288 (608)
..++|++|++++| .+..... .....+++|++|++++|.+.... +. .....+++|++|+++++.++. .....+.
T Consensus 143 ~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred hccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence 3478888888877 3332211 12245678888888877754322 11 112356777777777776652 2222233
Q ss_pred hcCCCCcEEEecc
Q 007312 289 NQCLSLELLALYS 301 (608)
Q Consensus 289 ~~~~~L~~L~l~~ 301 (608)
..+++|++|++++
T Consensus 221 ~~l~~L~~L~Ls~ 233 (310)
T 4glp_A 221 AAGVQPHSLDLSH 233 (310)
T ss_dssp HHTCCCSSEECTT
T ss_pred hcCCCCCEEECCC
Confidence 3456666666655
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.20 E-value=9.1e-12 Score=109.24 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=64.4
Q ss_pred CCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCC
Q 007312 447 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPL 526 (608)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 526 (608)
+++|++|++++| .+.+ +..+..+++|++|++++| .++......+ ..+++|++|++++| .+++.....+. .+++
T Consensus 65 l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~ 137 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGK-DVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTKIN-TLPK 137 (197)
T ss_dssp CTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECT-TCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSS
T ss_pred CCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECC-ccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCC
Confidence 445555555444 2222 123444445555555553 3332222222 23566666666666 35543333333 3566
Q ss_pred cceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 527 LKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 527 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
|++|++++|..+++.. . ...+++|+.|++++|... ... .+..+++|+.|++++|++..
T Consensus 138 L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~i~-~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 138 VNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFDGVH-DYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTBCCC-CCT---TGGGCSSCCEEEECBC----
T ss_pred CCEEEccCCCCccccH--h-hcCCCCCCEEECCCCCCc-ChH---HhccCCCCCEEEeeCcccCC
Confidence 6666666654344432 2 235667777777666432 211 24567888888888887754
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=6.7e-11 Score=110.61 Aligned_cols=128 Identities=18% Similarity=0.131 Sum_probs=64.6
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCP 525 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 525 (608)
.+++|+.|++++|. +.+ +..+..+++|++|++++| .++.. . ....+++|+.|++++| .+++. .....++
T Consensus 88 ~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~n-~l~~~---~~l~~l~ 156 (291)
T 1h6t_A 88 NLKNLGWLFLDENK-VKD--LSSLKDLKKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNN-KITDI---TVLSRLT 156 (291)
T ss_dssp TCTTCCEEECCSSC-CCC--GGGGTTCTTCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCSS-CCCCC---GGGGGCT
T ss_pred cCCCCCEEECCCCc-CCC--ChhhccCCCCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccCC-cCCcc---hhhccCC
Confidence 44555555555533 332 223444555666666554 23321 1 1234566666666665 34432 1223456
Q ss_pred CcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeecc
Q 007312 526 LLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 526 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
+|+.|++++|. +++... ...+++|+.|++++|. ++.. .. +..+++|+.|++++|+++..
T Consensus 157 ~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 157 KLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCBC--GG-GTTCTTCSEEEEEEEEEECC
T ss_pred CCCEEEccCCc-cccchh---hcCCCccCEEECCCCc-CCCC--hh-hccCCCCCEEECcCCcccCC
Confidence 66666666643 443322 3356666666666653 3221 11 35667777777777766653
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=6.8e-13 Score=123.66 Aligned_cols=203 Identities=18% Similarity=0.119 Sum_probs=105.1
Q ss_pred CCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCcc
Q 007312 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (608)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (608)
++|++|+++++ .+.......+ ..+++|++|++++ +.+...... ....+++|+.|+++++. ++... ...+..+++
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSF-FSFPELQVLDLSR-CEIQTIEDG-AYQSLSHLSTLILTGNP-IQSLA-LGAFSGLSS 101 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTT-TTCTTCSEEECTT-CCCCEECTT-TTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTT
T ss_pred CCccEEECCCC-cccccCHhHh-ccccCCcEEECCC-CcCCccCHH-HccCCcCCCEEECCCCc-cCccC-hhhhcCCcc
Confidence 46888888874 3433222222 3467888888877 344432211 12456788888887753 33211 122344677
Q ss_pred CcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChH-HHHhhhcCCCccEEEecCCcccCH---HHHHHHHhhCC
Q 007312 424 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDE-ALISIGQGCSLQHLNVSGCHQIGD---AGIMAIAKGCP 499 (608)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~ 499 (608)
|++|+++++. +...... ....+++|++|++++|. +... ....+..+++|++|++++| .++. ..+..+. .++
T Consensus 102 L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~L~ 176 (276)
T 2z62_A 102 LQKLVAVETN-LASLENF-PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH-QMP 176 (276)
T ss_dssp CCEEECTTSC-CCCSTTC-CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH-TCT
T ss_pred ccEEECCCCC-ccccCch-hcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh-hcc
Confidence 7777777653 2211100 12346777777777754 3332 2345556667777777774 3332 1222221 233
Q ss_pred CCc-EEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCC
Q 007312 500 ELN-YLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 500 ~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 562 (608)
.|. .|++++| .++......+ ..++|+.|+++++. ++.... .....+++|+.|++++|+
T Consensus 177 ~l~l~L~ls~n-~l~~~~~~~~--~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 177 LLNLSLDLSLN-PMNFIQPGAF--KEIRLKELALDTNQ-LKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp TCCEEEECCSS-CCCEECTTSS--CSCCEEEEECCSSC-CSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred ccceeeecCCC-cccccCcccc--CCCcccEEECCCCc-eeecCH-hHhcccccccEEEccCCc
Confidence 333 6777776 3443211111 23467777777753 553322 222346677777776554
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.11 E-value=3.6e-12 Score=118.21 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=27.3
Q ss_pred CCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccC
Q 007312 343 CKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDC 406 (608)
Q Consensus 343 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 406 (608)
+++|+.|.+.++. +... ..+ ..+++|+.|++++ +.+.... ....+++|+.|+++++
T Consensus 40 l~~L~~L~l~~~~-i~~~--~~l-~~l~~L~~L~l~~-n~l~~~~---~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSV--QGI-QYLPNVRYLALGG-NKLHDIS---ALKELTNLTYLILTGN 95 (272)
T ss_dssp HTTCCEEECTTSC-CCCC--TTG-GGCTTCCEEECTT-SCCCCCG---GGTTCTTCCEEECTTS
T ss_pred ccceeeeeeCCCC-cccc--ccc-ccCCCCcEEECCC-CCCCCch---hhcCCCCCCEEECCCC
Confidence 3567777776643 2211 112 2356666666665 3333211 1234556666666554
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=6.4e-11 Score=103.80 Aligned_cols=129 Identities=20% Similarity=0.169 Sum_probs=67.7
Q ss_pred cCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCC
Q 007312 420 GCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCP 499 (608)
Q Consensus 420 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 499 (608)
.+++|++|++++| .+.... ....+++|++|++++|. +.+..+..+..+++|+.|++++| .++......+ ..++
T Consensus 64 ~l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l-~~l~ 136 (197)
T 4ezg_A 64 YAHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKI-NTLP 136 (197)
T ss_dssp GCTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHH-TTCS
T ss_pred cCCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCC-ccCcHhHHHH-hhCC
Confidence 3455555555544 222111 12235666666666632 44444455555666666666664 4444333333 3466
Q ss_pred CCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCC
Q 007312 500 ELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 500 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 562 (608)
+|++|++++|..+++.. ....+++|+.|++++|. +++.. ....+++|++|++++++
T Consensus 137 ~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 137 KVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred CCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 77777777663244432 12346777777777754 55422 22356777777777654
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.09 E-value=1.4e-11 Score=114.29 Aligned_cols=197 Identities=17% Similarity=0.077 Sum_probs=133.9
Q ss_pred CcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCC
Q 007312 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (608)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (608)
+++|+.|.+.++ .+.... . ...+++|+.|+++++. +.. +. ....+++|++|++++| .+.... ......++
T Consensus 40 l~~L~~L~l~~~-~i~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~ 109 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSVQ--G-IQYLPNVRYLALGGNK-LHD--IS-ALKELTNLTYLILTGN-QLQSLP-NGVFDKLT 109 (272)
T ss_dssp HTTCCEEECTTS-CCCCCT--T-GGGCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECTTS-CCCCCC-TTTTTTCT
T ss_pred ccceeeeeeCCC-Cccccc--c-cccCCCCcEEECCCCC-CCC--ch-hhcCCCCCCEEECCCC-ccCccC-hhHhcCCc
Confidence 488999999884 444322 1 3568999999999864 443 22 3456899999999987 343211 11234678
Q ss_pred CCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcc
Q 007312 449 SLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLK 528 (608)
Q Consensus 449 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 528 (608)
+|++|++++|. +.......+..+++|++|++++| .++... ...+..+++|+.|++++| .++.... .....+++|+
T Consensus 110 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~ 184 (272)
T 3rfs_A 110 NLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLP-KGVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLK 184 (272)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCC
T ss_pred CCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccC-HHHhccCccCCEEECCCC-CcCccCH-HHhcCCccCC
Confidence 99999999964 66555555677788999999986 454221 122346899999999998 4654322 2223579999
Q ss_pred eeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 529 DVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 529 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
.|++++|. ++..... ....+++|+.|++++|+.. ..||+|+.++++.|.++.
T Consensus 185 ~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 185 DLRLYQNQ-LKSVPDG-VFDRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHSG 236 (272)
T ss_dssp EEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTGG
T ss_pred EEECCCCc-CCccCHH-HHhCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCCC
Confidence 99999965 6653332 2346899999999988643 357888888888776654
No 93
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.06 E-value=1e-10 Score=76.61 Aligned_cols=43 Identities=33% Similarity=0.466 Sum_probs=37.1
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccceee
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLRI 52 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~~ 52 (608)
+.||+||+.+||+||+ .+|+.+++.|||+|++++.....|..+
T Consensus 10 ~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 10 DSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp CSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred HHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 5899999999999999 999999999999999998776666543
No 94
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=5.8e-10 Score=106.55 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCCCcEEeecCCCCCChHHHHHHhc--cCCCcceeecccccCccHHHHHHHHH---cCCccCeeecccCCCCCHHHHHHH
Q 007312 498 CPELNYLDVSVLQNLGDQAMVELGK--GCPLLKDVVLSHCRQITDVGLSHLVK---NCRMLESCHMVYCPGITAAGVATV 572 (608)
Q Consensus 498 ~~~L~~L~l~~~~~l~~~~~~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~~~~~~~~~~~ 572 (608)
+|+|+.|++.+| .+++.+...++. .+|+|+.|+|+.+ .+++.+...+.. .+++|+.|++++|. +++.++..+
T Consensus 251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l 327 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKEL 327 (362)
T ss_dssp CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHH
T ss_pred CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHH
Confidence 566666666666 355544444432 3566777777653 466666555542 35667777776653 666666555
Q ss_pred HHcCCCCcEEEeccee
Q 007312 573 VSGCANIKKVMVEKWK 588 (608)
Q Consensus 573 ~~~~~~L~~l~l~~~~ 588 (608)
.+.+ ...++++.++
T Consensus 328 ~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHC--CSEEECCSBC
T ss_pred HHHc--CCEEEecCCc
Confidence 4323 2345555554
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=2.6e-10 Score=117.28 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCC
Q 007312 498 CPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCA 577 (608)
Q Consensus 498 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~ 577 (608)
+++|+.|+|++| .+++. .....+++|+.|+|++|. +++... ...+++|+.|++++|. ++.. + .+..++
T Consensus 130 l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~-i~~l--~-~l~~l~ 197 (605)
T 1m9s_A 130 LPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKNH-ISDL--R-ALAGLK 197 (605)
T ss_dssp CTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCBC--G-GGTTCT
T ss_pred CCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCCC-CCCC--h-HHccCC
Confidence 455555555554 23322 112234555555555542 332221 2244555555555543 2211 1 134455
Q ss_pred CCcEEEecceeeec
Q 007312 578 NIKKVMVEKWKVSE 591 (608)
Q Consensus 578 ~L~~l~l~~~~~~~ 591 (608)
+|+.|++++|++..
T Consensus 198 ~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 198 NLDVLELFSQECLN 211 (605)
T ss_dssp TCSEEECCSEEEEC
T ss_pred CCCEEEccCCcCcC
Confidence 55555555555554
No 96
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=1.8e-09 Score=103.18 Aligned_cols=160 Identities=16% Similarity=0.058 Sum_probs=94.2
Q ss_pred HhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHh-cCCCCcEEecccCC--cCChH---H
Q 007312 392 GRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGE-HCNSLTELSLRFCD--RVGDE---A 465 (608)
Q Consensus 392 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~--~~~~~---~ 465 (608)
...+|+|+.|.+.++..+.. .. . ..++|++|++..| .++...+..+.. .+|+|++|+++.+. ...+. .
T Consensus 168 l~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HhcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 34455666666655421111 01 1 2566777776655 455555555543 46777777764311 01111 1
Q ss_pred HHh-h--hcCCCccEEEecCCcccCHHHHHHHHh--hCCCCcEEeecCCCCCChHHHHHHhc---cCCCcceeecccccC
Q 007312 466 LIS-I--GQGCSLQHLNVSGCHQIGDAGIMAIAK--GCPELNYLDVSVLQNLGDQAMVELGK---GCPLLKDVVLSHCRQ 537 (608)
Q Consensus 466 ~~~-l--~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~ 537 (608)
+.. + ..+++|+.|++++| .+++.+...++. .+|+|++|+|+.| .+++.+...+.. .+++|+.|++++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~- 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY- 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-
T ss_pred HHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-
Confidence 111 1 13567888888875 455555555543 4678889998887 688877766653 46888999998874
Q ss_pred ccHHHHHHHHHcCCccCeeecccCC
Q 007312 538 ITDVGLSHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 538 l~~~~~~~~~~~~~~L~~L~l~~c~ 562 (608)
+++.++..+.+.+ ...+++++..
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 8888888887544 3456776544
No 97
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.01 E-value=1.5e-11 Score=113.88 Aligned_cols=180 Identities=16% Similarity=0.077 Sum_probs=105.4
Q ss_pred cccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCC
Q 007312 370 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 449 (608)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 449 (608)
+++++|++++ +.+...+.. .+..+++|+.|+++++. ++.. ....+..+++|++|+++++. +..... .....+++
T Consensus 37 ~~l~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSLPSK-AFHRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETLWVTDNK-LQALPI-GVFDQLVN 110 (270)
T ss_dssp TTCSEEECCS-SCCSCCCTT-SSSSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEEECCSSC-CCCCCT-TTTTTCSS
T ss_pred CCCCEEECcC-CCCCeeCHH-HhcCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEEECCCCc-CCcCCH-hHcccccC
Confidence 5788888887 445433211 22467888888888753 3321 11223457888888888763 332111 12245678
Q ss_pred CcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcce
Q 007312 450 LTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKD 529 (608)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~ 529 (608)
|++|+++++. +.......+..+++|++|++++| .++.... ..+..+++|+.|++++| .++...... ...+++|+.
T Consensus 111 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~ 185 (270)
T 2o6q_A 111 LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKT 185 (270)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCE
T ss_pred CCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCC-cCCccCH-hHccCCcccceeEecCC-cCcEeChhH-hccCCCcCE
Confidence 8888888753 55544455666777888888875 3442211 12345778888888877 344322111 234678888
Q ss_pred eecccccCccHHHHHHHHHcCCccCeeecccCC
Q 007312 530 VVLSHCRQITDVGLSHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 530 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 562 (608)
|+++++. ++......+ ..+++|+.|++++|+
T Consensus 186 L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNNQ-LKRVPEGAF-DSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSC-CSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred EECCCCc-CCcCCHHHh-ccccCCCEEEecCCC
Confidence 8888753 554332222 356778888887665
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.00 E-value=7.2e-10 Score=103.60 Aligned_cols=101 Identities=33% Similarity=0.296 Sum_probs=49.5
Q ss_pred cCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEEEeccccCCChHHHHHHhhcCCC
Q 007312 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELLALYSFQQFTDKGLHAVGKGCKK 319 (608)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 319 (608)
.+++|++|++++|.+... .....+++|+.|+++.+.+... . ....+++|++|+++++ .+..... ...+++
T Consensus 110 ~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--T-VLSRLTKLDTLSLEDN-QISDIVP---LAGLTK 179 (291)
T ss_dssp TCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSS-CCCCCGG---GTTCTT
T ss_pred cCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc--h-hhccCCCCCEEEccCC-ccccchh---hcCCCc
Confidence 445555555555544432 1122345555555555544432 1 1223556666666553 2222111 334667
Q ss_pred CCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCC
Q 007312 320 LKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGC 354 (608)
Q Consensus 320 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 354 (608)
|+.|+++++. ++.. .. ...+++|+.|+++++
T Consensus 180 L~~L~L~~N~-i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 180 LQNLYLSKNH-ISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp CCEEECCSSC-CCBC--GG-GTTCTTCSEEEEEEE
T ss_pred cCEEECCCCc-CCCC--hh-hccCCCCCEEECcCC
Confidence 7777777665 2221 11 345677777777764
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.98 E-value=2e-11 Score=113.72 Aligned_cols=40 Identities=20% Similarity=0.084 Sum_probs=18.3
Q ss_pred cCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
.+++|++|++++|.+...... .+..+++|++|+++++.+.
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCC
T ss_pred cccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccC
Confidence 345555555555544332211 1223455555555554443
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.97 E-value=5.8e-10 Score=92.72 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=69.2
Q ss_pred ccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCC
Q 007312 422 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPEL 501 (608)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 501 (608)
++|+.|++++|. +.+..+......+++|+.|++++|. +... ..+..+++|+.|++++| .++.. +......+++|
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTC
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCC
Confidence 455666665542 2211112222345677777776653 4433 44555666777777764 34332 23333446777
Q ss_pred cEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHH--HHHHHcCCccCeeecc
Q 007312 502 NYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGL--SHLVKNCRMLESCHMV 559 (608)
Q Consensus 502 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~ 559 (608)
++|++++| .+++.........+++|++|++++|+ ++.... ......+++|+.|+++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 77777777 46553322333456777777777753 554332 1233456666666654
No 101
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.97 E-value=2.7e-11 Score=112.23 Aligned_cols=200 Identities=16% Similarity=0.094 Sum_probs=123.7
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCC
Q 007312 319 KLKNLTLSDCYFLSDMGLEAIATGCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSL 398 (608)
Q Consensus 319 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 398 (608)
+.+.+++++.. ++. ++. ...+++++|+++++. +....... ...+++|++|++++ +.+...+ ...+..+++|
T Consensus 17 ~~~~l~~~~~~-l~~--ip~--~~~~~l~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~-n~l~~i~-~~~~~~l~~L 87 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTA--IPS--NIPADTKKLDLQSNK-LSSLPSKA-FHRLTKLRLLYLND-NKLQTLP-AGIFKELKNL 87 (270)
T ss_dssp TTTEEECTTSC-CSS--CCS--CCCTTCSEEECCSSC-CSCCCTTS-SSSCTTCCEEECCS-SCCSCCC-TTTTSSCTTC
T ss_pred CCCEEEccCCC-CCc--cCC--CCCCCCCEEECcCCC-CCeeCHHH-hcCCCCCCEEECCC-CccCeeC-hhhhcCCCCC
Confidence 45666666554 221 110 112579999998853 33322112 23468999999988 4454332 1223467899
Q ss_pred cEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEE
Q 007312 399 QALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHL 478 (608)
Q Consensus 399 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 478 (608)
+.|+++++. +... ....+..+++|++|+++++. +..... .....+++|++|++++|. +.......+..+++|++|
T Consensus 88 ~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 88 ETLWVTDNK-LQAL-PIGVFDQLVNLAELRLDRNQ-LKSLPP-RVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp CEEECCSSC-CCCC-CTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CEEECCCCc-CCcC-CHhHcccccCCCEEECCCCc-cCeeCH-HHhCcCcCCCEEECCCCc-CCccCHhHccCCccccee
Confidence 999999863 3321 11233568899999998863 332211 123467899999999964 665555556777889999
Q ss_pred EecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeeccccc
Q 007312 479 NVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCR 536 (608)
Q Consensus 479 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~ 536 (608)
++++| .++.... ..+..+++|+.|++++| .++..... ....+++|+.|++++++
T Consensus 163 ~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNN-QLKRVPE-GAFDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSS-CCSCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred EecCC-cCcEeCh-hHhccCCCcCEEECCCC-cCCcCCHH-HhccccCCCEEEecCCC
Confidence 99986 4443211 12345789999999998 45532222 22357899999998865
No 102
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=9.6e-09 Score=88.41 Aligned_cols=121 Identities=12% Similarity=0.122 Sum_probs=67.7
Q ss_pred HHHHHHhcCCCCcEEecccCCcCChHHHHhhhc----CCCccEEEecCCcccCHHHHHHHHh---hCCCCcEEeecCCCC
Q 007312 439 GIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ----GCSLQHLNVSGCHQIGDAGIMAIAK---GCPELNYLDVSVLQN 511 (608)
Q Consensus 439 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 511 (608)
.+.......++|++|++++|..+++.+...+.. .++|++|++++| .+++.+...+.. ..++|++|+|++| .
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~ 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-F 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-c
Confidence 344455566777777777753566665554433 345777777664 466665544432 3456666666666 4
Q ss_pred CChHHHHHHhc---cCCCcceeec--ccccCccHHHHHHHHH---cCCccCeeecccCC
Q 007312 512 LGDQAMVELGK---GCPLLKDVVL--SHCRQITDVGLSHLVK---NCRMLESCHMVYCP 562 (608)
Q Consensus 512 l~~~~~~~l~~---~~~~L~~L~l--~~c~~l~~~~~~~~~~---~~~~L~~L~l~~c~ 562 (608)
+++.+...++. ..++|++|++ +++ .+++.+...+.+ ..++|++|++++|.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 66666555533 2356666666 443 366655443332 23556666665543
No 103
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.94 E-value=3.2e-11 Score=112.65 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=126.5
Q ss_pred cCCCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcC
Q 007312 342 GCKELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGC 421 (608)
Q Consensus 342 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 421 (608)
.+++++++++.+. .+.... . ...++++.|++++ +.+...... .+..+++|+.|+++++. ++.... . ..+
T Consensus 8 ~l~~l~~l~~~~~-~l~~ip-~---~~~~~l~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~--~-~~l 76 (290)
T 1p9a_G 8 KVASHLEVNCDKR-NLTALP-P---DLPKDTTILHLSE-NLLYTFSLA-TLMPYTRLTQLNLDRAE-LTKLQV--D-GTL 76 (290)
T ss_dssp CSTTCCEEECTTS-CCSSCC-S---CCCTTCCEEECTT-SCCSEEEGG-GGTTCTTCCEEECTTSC-CCEEEC--C-SCC
T ss_pred ccCCccEEECCCC-CCCcCC-C---CCCCCCCEEEcCC-CcCCccCHH-HhhcCCCCCEEECCCCc-cCcccC--C-CCC
Confidence 4678999998873 333211 0 1236899999988 555543322 23568999999999863 443111 1 468
Q ss_pred ccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCC
Q 007312 422 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPEL 501 (608)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 501 (608)
++|+.|+++++ .+.. +......+++|++|++++|. ++......+..+++|++|++++| .++... ...+..+++|
T Consensus 77 ~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 150 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLP-PGLLTPTPKL 150 (290)
T ss_dssp TTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTC
T ss_pred CcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCccC-hhhcccccCC
Confidence 89999999887 3331 11223467889999998854 66555556677788999999885 444221 1223457889
Q ss_pred cEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 502 NYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 502 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
+.|++++| .++.... .....+++|+.|+++++. ++... .-....++|+.|.+.+++-.
T Consensus 151 ~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~ip--~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 151 EKLSLANN-NLTELPA-GLLNGLENLDTLLLQENS-LYTIP--KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSSC-CCCCC--TTTTTTCCCSEEECCSCCBC
T ss_pred CEEECCCC-cCCccCH-HHhcCcCCCCEEECCCCc-CCccC--hhhcccccCCeEEeCCCCcc
Confidence 99999888 4543221 223357889999998854 65322 11224567888888876644
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.92 E-value=1.2e-11 Score=112.33 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=5.3
Q ss_pred CCCeEecCCCC
Q 007312 319 KLKNLTLSDCY 329 (608)
Q Consensus 319 ~L~~L~l~~~~ 329 (608)
++++|+++++.
T Consensus 32 ~l~~L~l~~n~ 42 (239)
T 2xwt_C 32 STQTLKLIETH 42 (239)
T ss_dssp TCCEEEEESCC
T ss_pred cccEEEEeCCc
Confidence 45555554443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.90 E-value=2.3e-09 Score=110.21 Aligned_cols=167 Identities=23% Similarity=0.124 Sum_probs=94.3
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (608)
+++|+.|++.++. +... + -+..+++|+.|+|++|.+..... + ..+++|+.|+++++....... ...++
T Consensus 42 L~~L~~L~l~~n~-i~~l--~-~l~~l~~L~~L~Ls~N~l~~~~~--l-~~l~~L~~L~Ls~N~l~~l~~-----l~~l~ 109 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--L-TNLKNLGWLFLDENKIKDLSS-----LKDLK 109 (605)
T ss_dssp HTTCCCCBCTTCC-CCCC--T-TGGGCTTCCEEECTTSCCCCCGG--G-GGCTTCCEEECCSSCCCCCTT-----STTCT
T ss_pred CCCCCEEECcCCC-CCCC--h-HHccCCCCCEEEeeCCCCCCChh--h-ccCCCCCEEECcCCCCCCChh-----hccCC
Confidence 4678888887653 2221 1 24568888888888887654322 3 347788888888763222111 11236
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcE
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLEL 296 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 296 (608)
+|+.|++++| .+... .. ...+++|+.|++++|.+... ..+..+++|+.|+++.+.+..... ...+++|++
T Consensus 110 ~L~~L~Ls~N-~l~~l--~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~ 179 (605)
T 1m9s_A 110 KLKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQN 179 (605)
T ss_dssp TCCEEECTTS-CCCCC--GG-GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred CCCEEEecCC-CCCCC--cc-ccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCE
Confidence 7777777776 33332 11 34567777777777766553 233456677777776666554322 334566666
Q ss_pred EEeccccCCChHHHHHHhhcCCCCCeEecCCCC
Q 007312 297 LALYSFQQFTDKGLHAVGKGCKKLKNLTLSDCY 329 (608)
Q Consensus 297 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 329 (608)
|+++++ .+... .. ...+++|+.|+++++.
T Consensus 180 L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 180 LYLSKN-HISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp EECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred EECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence 666653 23221 11 2235666666666554
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=6.2e-10 Score=94.72 Aligned_cols=133 Identities=20% Similarity=0.170 Sum_probs=63.4
Q ss_pred ccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCC
Q 007312 422 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPEL 501 (608)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 501 (608)
++|+.|++++|. +.+..+......+++|+.|++++|. +... ..+..+++|+.|++++|. ++.. +......+++|
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCC
Confidence 445555555542 2211111122345666666666643 4433 444555566666666643 3321 22333446667
Q ss_pred cEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHH--HHHHHcCCccCeeecccCC
Q 007312 502 NYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGL--SHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 502 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c~ 562 (608)
++|++++| .+++.........+++|+.|++++|+ ++.... ......+++|++|++.+|.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 77777766 34442111122345666666666653 443221 1223345555555555543
No 107
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=4.4e-08 Score=84.23 Aligned_cols=125 Identities=17% Similarity=0.204 Sum_probs=70.8
Q ss_pred HHHHHhcCccCcEEecccccccChHHHHHHHh---cCCCCcEEecccCCcCChHHHHhhhc----CCCccEEEecCCccc
Q 007312 414 ICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGE---HCNSLTELSLRFCDRVGDEALISIGQ----GCSLQHLNVSGCHQI 486 (608)
Q Consensus 414 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~ 486 (608)
+.......++|++|++++|..+++.+...+.. ..++|++|++++|. +++.+...++. .++|++|++++| .+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 44455556667777776654566655554442 34566677776643 66655444332 345677777663 56
Q ss_pred CHHHHHHHHh---hCCCCcEEee--cCCCCCChHHHHHHhc---cCCCcceeecccccCccHHH
Q 007312 487 GDAGIMAIAK---GCPELNYLDV--SVLQNLGDQAMVELGK---GCPLLKDVVLSHCRQITDVG 542 (608)
Q Consensus 487 ~~~~~~~~~~---~~~~L~~L~l--~~~~~l~~~~~~~l~~---~~~~L~~L~l~~c~~l~~~~ 542 (608)
++.+...+.. ..++|++|++ ++| .+++.+...+.. ..++|++|++++|. +++.+
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 6666555543 3456667776 555 466666544432 34666777766653 55444
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.85 E-value=5.5e-10 Score=104.25 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=66.5
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (608)
+++++.+++.++ .+.. ++.- -.+++++|++++|.+.......+.. +++|+.|+++++. +...... ...+
T Consensus 9 l~~l~~l~~~~~-~l~~--ip~~--~~~~l~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~n~-l~~~~~~----~~l~ 77 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTA--LPPD--LPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRAE-LTKLQVD----GTLP 77 (290)
T ss_dssp STTCCEEECTTS-CCSS--CCSC--CCTTCCEEECTTSCCSEEEGGGGTT-CTTCCEEECTTSC-CCEEECC----SCCT
T ss_pred cCCccEEECCCC-CCCc--CCCC--CCCCCCEEEcCCCcCCccCHHHhhc-CCCCCEEECCCCc-cCcccCC----CCCC
Confidence 467777777654 2221 1110 1357888888888765433333333 6778888877653 2211100 1236
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
+|++|+++++ .+... +.....+++|++|++++|.++.... ..+..+++|+.|+++.+.+.
T Consensus 78 ~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 78 VLGTLDLSHN-QLQSL--PLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELK 137 (290)
T ss_dssp TCCEEECCSS-CCSSC--CCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCC
T ss_pred cCCEEECCCC-cCCcC--chhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCC
Confidence 6777777665 33311 1122455666777776666553221 11224556666666655544
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=3.3e-09 Score=97.40 Aligned_cols=122 Identities=17% Similarity=0.112 Sum_probs=56.6
Q ss_pred cCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCC
Q 007312 394 GCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGC 473 (608)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 473 (608)
.+++|+.|+++++. ++. +. ....+++|+.|+++++ .+..... ...+++|+.|++++|. +.+. ..+.. .
T Consensus 39 ~l~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~-l~~l--~~~~~-~ 106 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQS--LA-GMQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNR-LKNL--NGIPS-A 106 (263)
T ss_dssp HHTTCSEEECTTSC-CCC--CT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSC-CSCC--TTCCC-S
T ss_pred hcCcCcEEECcCCC-ccc--ch-HHhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCc-cCCc--Ccccc-C
Confidence 45677777777752 332 11 2344666677766665 3332211 3455666666666643 3321 11222 4
Q ss_pred CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccc
Q 007312 474 SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 535 (608)
Q Consensus 474 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 535 (608)
+|+.|++++| .++.. .. +..+++|+.|++++| .+++.. ....+++|+.|++++|
T Consensus 107 ~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEECTTS
T ss_pred cccEEEccCC-ccCCC--hh-hcCcccccEEECCCC-cCCCCh---HHccCCCCCEEECCCC
Confidence 4555555553 23321 11 233555555555555 233321 1123445555555543
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=1.5e-09 Score=90.14 Aligned_cols=58 Identities=21% Similarity=0.115 Sum_probs=28.9
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
++|+.|++.++ .+....++..+..+++|++|++++|.+... ..+ ..+++|++|+++++
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANL-PKLNKLKKLELSDN 74 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTC-CCCTTCCEEECCSS
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhh-hcCCCCCEEECCCC
Confidence 56777777665 232112233344566666666666665432 111 12444555555443
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.81 E-value=1.1e-10 Score=106.04 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=38.8
Q ss_pred CCCCc-EEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhC-CCCcEEeecCCCCCChHHHHHHhccC
Q 007312 447 CNSLT-ELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGC-PELNYLDVSVLQNLGDQAMVELGKGC 524 (608)
Q Consensus 447 ~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~ 524 (608)
+++|+ +|+++++. +.......+.. .+|++|++++|..++.... ..+..+ ++|+.|++++| .++.... ..+
T Consensus 154 l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N-~l~~l~~----~~~ 225 (239)
T 2xwt_C 154 LCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQT-SVTALPS----KGL 225 (239)
T ss_dssp TBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTC-CCCCCCC----TTC
T ss_pred hhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCC-ccccCCh----hHh
Confidence 45555 55555532 33222222222 4566666666432332111 122335 67777777766 3432111 136
Q ss_pred CCcceeeccccc
Q 007312 525 PLLKDVVLSHCR 536 (608)
Q Consensus 525 ~~L~~L~l~~c~ 536 (608)
++|+.|++.++.
T Consensus 226 ~~L~~L~l~~~~ 237 (239)
T 2xwt_C 226 EHLKELIARNTW 237 (239)
T ss_dssp TTCSEEECTTC-
T ss_pred ccCceeeccCcc
Confidence 677777777654
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.77 E-value=6.3e-10 Score=94.68 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=99.2
Q ss_pred cCCCCcEEecccCCcCC-hHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccC
Q 007312 446 HCNSLTELSLRFCDRVG-DEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGC 524 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 524 (608)
..++|++|++++|. +. ......+..+++|+.|++++|. ++.. ..+..+++|++|++++| .++.. +......+
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l 94 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKL 94 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHC
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhC
Confidence 45789999999975 54 2223345667789999999964 5543 33456899999999999 46543 23334458
Q ss_pred CCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHH-HHHHHcCCCCcEEEecceeeecc
Q 007312 525 PLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGV-ATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 525 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
++|+.|++++|. +++.........+++|+.|++++|+....... ...+..+++|+.|++.+|++.+.
T Consensus 95 ~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 95 PNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp TTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 999999999974 77643323334789999999999864332221 23567899999999999987653
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.76 E-value=4.8e-10 Score=102.49 Aligned_cols=178 Identities=13% Similarity=0.066 Sum_probs=104.1
Q ss_pred cccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCC
Q 007312 370 RNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNS 449 (608)
Q Consensus 370 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 449 (608)
+..+++++++ ..+...+. .-.++++.|+++++. ++... ...+..+++|++|+++++ .+.... ......+++
T Consensus 14 ~~~~~l~~~~-~~l~~~p~----~~~~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~ 84 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPS----GIPADTEKLDLQSTG-LATLS-DATFRGLTKLTWLNLDYN-QLQTLS-AGVFDDLTE 84 (251)
T ss_dssp GGGTEEECTT-CCCSSCCS----CCCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTT
T ss_pred CCCeEEecCC-CCccccCC----CCCCCCCEEEccCCC-cCccC-HhHhcCcccCCEEECCCC-cCCccC-HhHhccCCc
Confidence 3456677665 33433221 112678899988863 33211 122345788888888876 333211 112245688
Q ss_pred CcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcce
Q 007312 450 LTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKD 529 (608)
Q Consensus 450 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~ 529 (608)
|++|++++|. +.......+..+++|++|++++| .++... ...+..+++|+.|++++| .++...... ...+++|+.
T Consensus 85 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~ 159 (251)
T 3m19_A 85 LGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTN-QLQSIPAGA-FDKLTNLQT 159 (251)
T ss_dssp CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCE
T ss_pred CCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCC-cCCccCHHH-cCcCcCCCE
Confidence 8888888854 55554555666778888888875 444211 112345788888888887 454322211 234678888
Q ss_pred eecccccCccHHHHHHHHHcCCccCeeecccCCC
Q 007312 530 VVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPG 563 (608)
Q Consensus 530 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 563 (608)
|+++++. ++......+ ..+++|+.|++.+|+.
T Consensus 160 L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 160 LSLSTNQ-LQSVPHGAF-DRLGKLQTITLFGNQF 191 (251)
T ss_dssp EECCSSC-CSCCCTTTT-TTCTTCCEEECCSCCB
T ss_pred EECCCCc-CCccCHHHH-hCCCCCCEEEeeCCce
Confidence 8888853 554333223 3577888888877654
No 114
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.71 E-value=2.1e-09 Score=98.18 Aligned_cols=17 Identities=18% Similarity=0.082 Sum_probs=9.3
Q ss_pred HhCCCccEEEccCCccC
Q 007312 161 QKCIHLKSLDLQGCYVG 177 (608)
Q Consensus 161 ~~~~~L~~L~l~~~~~~ 177 (608)
..+++|++|++++|.+.
T Consensus 56 ~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp TTCTTCCEEECTTSCCC
T ss_pred cCcccCCEEECCCCcCC
Confidence 34555556665555544
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.69 E-value=2.3e-08 Score=91.76 Aligned_cols=125 Identities=24% Similarity=0.195 Sum_probs=61.6
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCC
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGK 216 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 216 (608)
+++|+.|++.++ .+... + .+..+++|++|++++|.+.+... ...+++|+.|+++++.-...... .. +
T Consensus 40 l~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~-----~~-~ 106 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSL--A-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGI-----PS-A 106 (263)
T ss_dssp HTTCSEEECTTS-CCCCC--T-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTC-----CC-S
T ss_pred cCcCcEEECcCC-Ccccc--h-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcc-----cc-C
Confidence 456777777655 22221 1 23456677777777766553222 23366666666666532111100 01 4
Q ss_pred CccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCCh
Q 007312 217 SLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTD 281 (608)
Q Consensus 217 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 281 (608)
+|+.|++++| .++.. .. ...+++|++|++++|.++... .+..+++|+.|+++++.+.+
T Consensus 107 ~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCB
T ss_pred cccEEEccCC-ccCCC--hh-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcc
Confidence 5666666665 33322 11 244556666666655554432 23345555555555554443
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.55 E-value=2.7e-09 Score=94.35 Aligned_cols=82 Identities=17% Similarity=0.064 Sum_probs=35.3
Q ss_pred CCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCc
Q 007312 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSL 475 (608)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 475 (608)
++|+.|+++++. ++.. ....+..+++|++|+++++ .+.... ......+++|++|++++|. +.......+..+++|
T Consensus 28 ~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 102 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSL-PNGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQL 102 (208)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCcEEEcCCCc-cCcC-ChhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCC
Confidence 466677766642 2211 1112234556666666554 222111 0111234555555555532 332222233344445
Q ss_pred cEEEecC
Q 007312 476 QHLNVSG 482 (608)
Q Consensus 476 ~~L~l~~ 482 (608)
++|++++
T Consensus 103 ~~L~L~~ 109 (208)
T 2o6s_A 103 KELALNT 109 (208)
T ss_dssp CEEECCS
T ss_pred CEEEcCC
Confidence 5555554
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=4.1e-09 Score=107.67 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=24.6
Q ss_pred CCCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCc
Q 007312 137 FSKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCY 175 (608)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 175 (608)
++.|+.|+++++. ...++..+..+++|++|+++++.
T Consensus 348 ~~~L~~L~Ls~n~---L~~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 348 DEQLFRCELSVEK---STVLQSELESCKELQELEPENKW 383 (567)
T ss_dssp TTTSSSCCCCHHH---HHHHHHHHHHHHHHHHHCTTCHH
T ss_pred CccceeccCChhh---HHhhHHHHHHHHHHHHhccccch
Confidence 5677777777542 23566777778888888886654
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=6.7e-09 Score=90.90 Aligned_cols=134 Identities=18% Similarity=0.119 Sum_probs=61.6
Q ss_pred CCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCC
Q 007312 447 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPL 526 (608)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 526 (608)
+++|++|++++|. +.... .+..+++|+.|++++| .++. +......+++|+.|++++| .++... .+ ..+++
T Consensus 47 l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l~--~~-~~l~~ 116 (198)
T 1ds9_A 47 LKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASLS--GI-EKLVN 116 (198)
T ss_dssp TTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCHH--HH-HHHHH
T ss_pred CCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcCC--cc-ccCCC
Confidence 4444555544432 22211 3334444555555543 2221 1122223455666666655 344321 22 23456
Q ss_pred cceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCH--------HHHHHHHHcCCCCcEEEecceeeecce
Q 007312 527 LKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITA--------AGVATVVSGCANIKKVMVEKWKVSERT 593 (608)
Q Consensus 527 L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~--------~~~~~~~~~~~~L~~l~l~~~~~~~~~ 593 (608)
|+.|+++++. +++.........+++|++|++++|+.... ......+..+|+|+.|+ ++++++..
T Consensus 117 L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~e 188 (198)
T 1ds9_A 117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVDE 188 (198)
T ss_dssp SSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTTT
T ss_pred CCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHHH
Confidence 6666666643 44433212223456666666665532111 11123456778888775 67776544
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=5.6e-08 Score=83.14 Aligned_cols=108 Identities=10% Similarity=0.054 Sum_probs=53.9
Q ss_pred CCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCc
Q 007312 448 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLL 527 (608)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 527 (608)
++|+.|++++|. +... ..+..+++|+.|++++| .++... ..++..+++|++|++++| .+++.........+++|
T Consensus 42 ~~L~~L~Ls~N~-l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 42 DQFDAIDFSDNE-IRKL--DGFPLLRRLKTLLVNNN-RICRIG-EGLDQALPDLTELILTNN-SLVELGDLDPLASLKSL 115 (176)
T ss_dssp TCCSEEECCSSC-CCEE--CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTC
T ss_pred CCCCEEECCCCC-CCcc--cccccCCCCCEEECCCC-cccccC-cchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCC
Confidence 466666666643 4432 34445556666666664 343211 112234667777777766 34432211112246667
Q ss_pred ceeecccccCccHHHH--HHHHHcCCccCeeecccCC
Q 007312 528 KDVVLSHCRQITDVGL--SHLVKNCRMLESCHMVYCP 562 (608)
Q Consensus 528 ~~L~l~~c~~l~~~~~--~~~~~~~~~L~~L~l~~c~ 562 (608)
+.|++++++ ++.... ......+++|+.|+++++.
T Consensus 116 ~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 116 TYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777776654 432211 1123356666666666543
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.51 E-value=1.3e-08 Score=87.20 Aligned_cols=137 Identities=16% Similarity=0.140 Sum_probs=94.9
Q ss_pred cCCCCcEEecccCCcCChHHHHhhhcCC-CccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccC
Q 007312 446 HCNSLTELSLRFCDRVGDEALISIGQGC-SLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGC 524 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 524 (608)
.+++|++|++++|. +... ..+.... +|+.|++++| .++.. ..+..+++|++|++++| .++... ..+...+
T Consensus 17 ~~~~L~~L~l~~n~-l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIG-EGLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSC-CCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHC
T ss_pred CcCCceEEEeeCCC-Cchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccccC-cchhhcC
Confidence 45788889888864 5432 3455555 8999999996 56542 23346899999999999 465432 1122358
Q ss_pred CCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHH-HHHHHHcCCCCcEEEecceeeecc
Q 007312 525 PLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAG-VATVVSGCANIKKVMVEKWKVSER 592 (608)
Q Consensus 525 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~ 592 (608)
++|+.|+++++. +++.........+++|+.|++++|+...... -...+..+|+|+.|++++|...+.
T Consensus 88 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999974 6654321233478999999999987432211 122467899999999999987753
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.50 E-value=1.2e-09 Score=105.41 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=7.0
Q ss_pred CCCCCeEecCCCC
Q 007312 317 CKKLKNLTLSDCY 329 (608)
Q Consensus 317 ~~~L~~L~l~~~~ 329 (608)
+++|++|+++++.
T Consensus 103 l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 103 LPNLQYLLISNTG 115 (350)
T ss_dssp CTTCCEEEEEEEC
T ss_pred ccccccccccccc
Confidence 4555555555443
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.47 E-value=1e-08 Score=91.28 Aligned_cols=133 Identities=13% Similarity=0.103 Sum_probs=73.4
Q ss_pred ccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCC
Q 007312 422 QNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPEL 501 (608)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 501 (608)
++++.|+++++ .+..... .....+++|+.|++++| .+.......+..+++|+.|++++| .++.. ....+..+++|
T Consensus 32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITEL-PKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCcc-CHhHccCCCCC
Confidence 46778887775 3332111 11234677788887774 355554556666677777777774 34321 11223456777
Q ss_pred cEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCC
Q 007312 502 NYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPG 563 (608)
Q Consensus 502 ~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 563 (608)
+.|++++| .++...... ...+++|+.|+++++. ++......+ ..+++|+.|++.+|+.
T Consensus 107 ~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 107 QLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDNK-LQTIAKGTF-SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSSCE
T ss_pred CEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCCc-CCEECHHHH-hCCCCCCEEEeCCCCc
Confidence 77777777 344322221 2246777777777743 544332222 2466677777766553
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.47 E-value=1.7e-08 Score=90.59 Aligned_cols=134 Identities=16% Similarity=0.028 Sum_probs=81.7
Q ss_pred CccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCC
Q 007312 421 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 500 (608)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 500 (608)
.++|+.|+++++. +.... ......+++|++|++++|. +.......+..+++|+.|++++| .++... ...+..+++
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLE-PGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVH 113 (229)
T ss_dssp CTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCCCEEEcCCCc-cCccC-HHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccC-hhHhCcchh
Confidence 3678888888763 33211 1123456888888888854 55444455566778888888885 444221 122345788
Q ss_pred CcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCC
Q 007312 501 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGI 564 (608)
Q Consensus 501 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~ 564 (608)
|+.|++++| .++.. ..-...+++|+.|+++++ .++.... .....+++|+.|++.+|+..
T Consensus 114 L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 114 LKELFMCCN-KLTEL--PRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCEEECCSS-CCCSC--CTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred hCeEeccCC-ccccc--CcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 888888887 45421 111245788888888885 4654332 22345778888888776643
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.47 E-value=1.1e-08 Score=99.08 Aligned_cols=162 Identities=14% Similarity=0.014 Sum_probs=93.7
Q ss_pred CCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCc
Q 007312 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSL 475 (608)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 475 (608)
+.++.|+++++ .++......+...+++|+.|+++++ .+..... .....+++|++|++++|. +.......+..+.+|
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCC
Confidence 56888888885 3443211111125788888888876 3432211 112456888888888854 655545556667788
Q ss_pred cEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHH--hccCCCcceeecccccCccHHHHHHHHHcCCc-
Q 007312 476 QHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVEL--GKGCPLLKDVVLSHCRQITDVGLSHLVKNCRM- 552 (608)
Q Consensus 476 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~- 552 (608)
+.|++++| .++.... ..+..+++|+.|++++| .++......+ ...+++|+.|+++++ .++......+. .++.
T Consensus 115 ~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l~~~ 189 (361)
T 2xot_A 115 EVLLLYNN-HIVVVDR-NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-KLPAW 189 (361)
T ss_dssp CEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHH-HSCHH
T ss_pred CEEECCCC-cccEECH-HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhh-hccHh
Confidence 88888875 4443211 12345788888888887 3443211111 024678888888875 46654444443 4555
Q ss_pred -cCeeecccCCCCCH
Q 007312 553 -LESCHMVYCPGITA 566 (608)
Q Consensus 553 -L~~L~l~~c~~~~~ 566 (608)
++.|++.+|+..-+
T Consensus 190 ~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 190 VKNGLYLHNNPLECD 204 (361)
T ss_dssp HHTTEECCSSCEECC
T ss_pred hcceEEecCCCccCC
Confidence 47777777664433
No 125
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.44 E-value=1.6e-06 Score=73.64 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=70.5
Q ss_pred HHHHHHhcCCCCcEEecccCCcCChHHHHhhhc----CCCccEEEecCCcccCHHHHHHHH---hhCCCCcEEeecCCCC
Q 007312 439 GIVAVGEHCNSLTELSLRFCDRVGDEALISIGQ----GCSLQHLNVSGCHQIGDAGIMAIA---KGCPELNYLDVSVLQN 511 (608)
Q Consensus 439 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 511 (608)
.+..+...-+.|++|++++++.+++.+...++. .+.|+.|+|++| .+++.+...+. ..-+.|+.|+|+.| .
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~ 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-F 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-B
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-c
Confidence 455555556777777777654577666554433 445777777774 56666655444 23466777777777 5
Q ss_pred CChHHHHHHhccC---CCcceeeccccc--CccHHHHHHHH---HcCCccCeeeccc
Q 007312 512 LGDQAMVELGKGC---PLLKDVVLSHCR--QITDVGLSHLV---KNCRMLESCHMVY 560 (608)
Q Consensus 512 l~~~~~~~l~~~~---~~L~~L~l~~c~--~l~~~~~~~~~---~~~~~L~~L~l~~ 560 (608)
|++.+...+++.+ +.|++|+|+++. .+.+.+...++ +.-++|+.|+++.
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 7777766665433 457777776532 35555433332 2345566666654
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.43 E-value=1.3e-08 Score=90.56 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=26.2
Q ss_pred CCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
.++.|+++++ .+........+..+++|++|++++|.++......+. .+++|++|+++++
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N 91 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSN 91 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCC
Confidence 4556666544 222111111234556666666666655432221222 2455555555543
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.41 E-value=2.1e-08 Score=88.57 Aligned_cols=153 Identities=18% Similarity=0.060 Sum_probs=104.4
Q ss_pred CccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCC
Q 007312 421 CQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPE 500 (608)
Q Consensus 421 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 500 (608)
.++|+.|+++++ .+.... ......+++|++|+++++ .+.......+..+++|++|++++| .++... ...+..+++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLP-NGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTT
T ss_pred CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccC-HhHhcCccC
Confidence 468999999987 343211 122346799999999995 466554455667788999999986 454221 122346899
Q ss_pred CcEEeecCCCCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCCCCc
Q 007312 501 LNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCANIK 580 (608)
Q Consensus 501 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~~L~ 580 (608)
|++|++++| .++.... .....+++|+.|+++++. ++.... .....+++|++|++.+|+.. ..|++|+
T Consensus 102 L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~~---------~~~~~l~ 168 (208)
T 2o6s_A 102 LKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQNQ-LKSVPD-GVFDRLTSLQYIWLHDNPWD---------CTCPGIR 168 (208)
T ss_dssp CCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSCCBC---------CCTTTTH
T ss_pred CCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCCc-cceeCH-HHhccCCCccEEEecCCCee---------cCCCCHH
Confidence 999999998 4553221 122458999999999964 664332 22346889999999998643 3578888
Q ss_pred EEEecceeeec
Q 007312 581 KVMVEKWKVSE 591 (608)
Q Consensus 581 ~l~l~~~~~~~ 591 (608)
.+.++.|.++.
T Consensus 169 ~L~~~~n~~~g 179 (208)
T 2o6s_A 169 YLSEWINKHSG 179 (208)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHhCCc
Confidence 88888887664
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=1.8e-08 Score=96.17 Aligned_cols=127 Identities=14% Similarity=0.063 Sum_probs=79.0
Q ss_pred CcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCC
Q 007312 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCN 448 (608)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 448 (608)
..+++.+.+.+ .+.......+...+++|+.+++.++. ++.. -...+.+|++|+++++.++ +...+ ...+..|+
T Consensus 201 ~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~-~~aF~~~~ 273 (329)
T 3sb4_A 201 PRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTI-PDFTFAQKKYLLKIKLPHN--LKTIG-QRVFSNCG 273 (329)
T ss_dssp GGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEE-CTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCT
T ss_pred ccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-ccee-cHhhhhCCCCCCEEECCcc--cceeh-HHHhhCCh
Confidence 35667777655 24455555555568888888888742 3321 1123456888999988764 22211 11234678
Q ss_pred CCc-EEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEee
Q 007312 449 SLT-ELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDV 506 (608)
Q Consensus 449 ~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 506 (608)
+|+ .+++.+ .+...+..++..+.+|+.+++.++ .++..+-. .+.+|++|+.+..
T Consensus 274 ~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~-aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 274 RLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDE-LFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTT-TTCTTCCCCEEEC
T ss_pred hccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchh-hhcCCcchhhhcc
Confidence 898 999987 466666677777888999999763 44433222 3346888888763
No 129
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.40 E-value=2e-08 Score=89.38 Aligned_cols=132 Identities=15% Similarity=0.020 Sum_probs=56.2
Q ss_pred CCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCc
Q 007312 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSL 475 (608)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 475 (608)
+.++.|+++++ .++.......+..+++|+.|+++++ .+..... .....+++|++|++++|. +.......+..+++|
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNR-LENVQHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSC
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCC
Confidence 45666776664 2332111111234566666666554 2221110 112234556666665532 443333344445555
Q ss_pred cEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCcceeecccc
Q 007312 476 QHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLLKDVVLSHC 535 (608)
Q Consensus 476 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~c 535 (608)
++|++++| .++..... .+..+++|+.|++++| .++...... ...+++|+.|+++++
T Consensus 108 ~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 108 KTLMLRSN-RITCVGND-SFIGLSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLAN 163 (220)
T ss_dssp CEEECTTS-CCCCBCTT-SSTTCTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSC
T ss_pred CEEECCCC-cCCeECHh-HcCCCccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCc
Confidence 55555553 23211111 1123455555555555 233221111 113455555555553
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.40 E-value=2.2e-08 Score=101.77 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=114.3
Q ss_pred CCCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCcc
Q 007312 344 KELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQN 423 (608)
Q Consensus 344 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 423 (608)
.+|+.|+++++. +... +. ..+++|+.|++++ +.+...+ ..+++|+.|+++++ .++. +.. + ..+
T Consensus 59 ~~L~~L~Ls~n~-L~~l--p~--~l~~~L~~L~Ls~-N~l~~ip-----~~l~~L~~L~Ls~N-~l~~--ip~-l--~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSL--PD--NLPPQITVLEITQ-NALISLP-----ELPASLEYLDACDN-RLST--LPE-L--PAS 121 (571)
T ss_dssp TTCSEEECCSSC-CSCC--CS--CCCTTCSEEECCS-SCCSCCC-----CCCTTCCEEECCSS-CCSC--CCC-C--CTT
T ss_pred CCccEEEeCCCC-CCcc--CH--hHcCCCCEEECcC-CCCcccc-----cccCCCCEEEccCC-CCCC--cch-h--hcC
Confidence 589999999853 3321 11 1247899999998 5566433 35789999999986 3433 222 1 228
Q ss_pred CcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcE
Q 007312 424 LKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNY 503 (608)
Q Consensus 424 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 503 (608)
|+.|++++|. ++. +.. .+++|+.|++++|. ++... . .+++|+.|++++|. ++. +.. + .++|+.
T Consensus 122 L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~-l~~lp--~--~l~~L~~L~Ls~N~-L~~--lp~-l--~~~L~~ 184 (571)
T 3cvr_A 122 LKHLDVDNNQ-LTM--LPE---LPALLEYINADNNQ-LTMLP--E--LPTSLEVLSVRNNQ-LTF--LPE-L--PESLEA 184 (571)
T ss_dssp CCEEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSCCC--C--CCTTCCEEECCSSC-CSC--CCC-C--CTTCCE
T ss_pred CCEEECCCCc-CCC--CCC---cCccccEEeCCCCc-cCcCC--C--cCCCcCEEECCCCC-CCC--cch-h--hCCCCE
Confidence 9999999873 432 111 57899999999864 44321 1 34679999999864 443 222 2 288999
Q ss_pred EeecCCCCCChHHH--HHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHH
Q 007312 504 LDVSVLQNLGDQAM--VELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAA 567 (608)
Q Consensus 504 L~l~~~~~l~~~~~--~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~ 567 (608)
|++++| .++.... ..+....+.|+.|++++|. ++... ..+. .+++|+.|++++|+ ++..
T Consensus 185 L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~lp-~~l~-~l~~L~~L~L~~N~-l~~~ 245 (571)
T 3cvr_A 185 LDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITHIP-ENIL-SLDPTCTIILEDNP-LSSR 245 (571)
T ss_dssp EECCSS-CCSSCCCCC--------CCEEEECCSSC-CCCCC-GGGG-GSCTTEEEECCSSS-CCHH
T ss_pred EECcCC-CCCchhhHHHhhhcccccceEEecCCCc-ceecC-HHHh-cCCCCCEEEeeCCc-CCCc
Confidence 999998 4542111 0111112333999999864 66432 2233 48889999998876 4443
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.38 E-value=4.7e-08 Score=87.65 Aligned_cols=59 Identities=25% Similarity=0.161 Sum_probs=29.9
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
++|+.|+++++. +... .+..+..+++|++|+|++|.+..-.. .....+++|+.|+++++
T Consensus 40 ~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKL-EPGVFDSLINLKELYLGSNQLGALPV-GVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTCSEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCc-cCcc-CHHHhhCccCCcEEECCCCCCCCcCh-hhcccCCCcCEEECCCC
Confidence 467777776542 2211 11234456677777777766542211 11123556666666654
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.37 E-value=1.8e-07 Score=95.07 Aligned_cols=179 Identities=16% Similarity=0.064 Sum_probs=97.0
Q ss_pred CCCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCC
Q 007312 138 SKLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKS 217 (608)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 217 (608)
.+|+.|++.++ .+.. ++.- -+++|++|++++|.++. +. ..+++|+.|+++++. +.. +.. ...+
T Consensus 59 ~~L~~L~Ls~n-~L~~--lp~~--l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~----l~~~ 121 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSS--LPDN--LPPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LST--LPE----LPAS 121 (571)
T ss_dssp TTCSEEECCSS-CCSC--CCSC--CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSC--CCC----CCTT
T ss_pred CCccEEEeCCC-CCCc--cCHh--HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCC--cch----hhcC
Confidence 47888888865 3322 2211 14678888888888762 11 346788888888763 221 111 1137
Q ss_pred ccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCcEE
Q 007312 218 LKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLELL 297 (608)
Q Consensus 218 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 297 (608)
|++|++++| .++.. +. .+++|+.|++++|.++.... .+++|+.|++++|.++.. +.+ .++|+.|
T Consensus 122 L~~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~l--p~l---~~~L~~L 185 (571)
T 3cvr_A 122 LKHLDVDNN-QLTML--PE---LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFL--PEL---PESLEAL 185 (571)
T ss_dssp CCEEECCSS-CCSCC--CC---CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCC--CCC---CTTCCEE
T ss_pred CCEEECCCC-cCCCC--CC---cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCc--chh---hCCCCEE
Confidence 888888887 34331 11 46788888888877664221 456788888877766541 111 1677777
Q ss_pred EeccccCCChHHH--HHHhhcCCCCCeEecCCCCCCCHHHHHHHHhcCCCCcEEEecC
Q 007312 298 ALYSFQQFTDKGL--HAVGKGCKKLKNLTLSDCYFLSDMGLEAIATGCKELTHLEING 353 (608)
Q Consensus 298 ~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 353 (608)
+++++ .++.... ..+....+.|+.|+++++. ++. ++.....+++|+.|++++
T Consensus 186 ~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 186 DVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITH--IPENILSLDPTCTIILED 239 (571)
T ss_dssp ECCSS-CCSSCCCCC--------CCEEEECCSSC-CCC--CCGGGGGSCTTEEEECCS
T ss_pred ECcCC-CCCchhhHHHhhhcccccceEEecCCCc-cee--cCHHHhcCCCCCEEEeeC
Confidence 77763 3321100 0000111222666666654 221 111122356666666666
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.36 E-value=5.5e-08 Score=94.03 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=20.6
Q ss_pred hcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 239 SHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
..+++|++|++++|.+...... .+..+++|+.|+++.|.+.
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCC
T ss_pred CCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCC
Confidence 3455666666666555433221 1224556666666555544
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.35 E-value=1.4e-07 Score=82.45 Aligned_cols=113 Identities=18% Similarity=0.074 Sum_probs=65.7
Q ss_pred HHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCchHHHHHHhhcCCCccEEecCCCCCcChHHHH
Q 007312 156 LMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTDTGLVDLAHGCGKSLKSLGIAACVKITDVSLE 235 (608)
Q Consensus 156 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 235 (608)
++..+..+++|++|++++|.+.. +..+.. +++|+.|+++++.-..-... ... .++|++|++++| .+....
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~--l~~~~~-l~~L~~L~l~~n~l~~l~~~---~~~-~~~L~~L~L~~N-~l~~l~-- 109 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK--ISSLSG-MENLRILSLGRNLIKKIENL---DAV-ADTLEELWISYN-QIASLS-- 109 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC--CCCHHH-HTTCCEEEEEEEEECSCSSH---HHH-HHHCSEEEEEEE-ECCCHH--
T ss_pred hhHHHhcCCCCCEEECCCCCCcc--cccccc-CCCCCEEECCCCCcccccch---hhc-CCcCCEEECcCC-cCCcCC--
Confidence 34466778889999998887654 223333 67788888876532111111 111 156777777776 444322
Q ss_pred HHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCC
Q 007312 236 AVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (608)
Q Consensus 236 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (608)
. ...+++|++|++++|.+........+..+++|+.|+++++.+
T Consensus 110 ~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp H-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred c-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 2 234567777777777666543323344566677777766554
No 135
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.34 E-value=7.6e-06 Score=69.46 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=81.5
Q ss_pred HHHHHHHhcCccCcEEecccccccChHHHHHHHhc---CCCCcEEecccCCcCChHHHHhhh----cCCCccEEEecCCc
Q 007312 412 DAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEH---CNSLTELSLRFCDRVGDEALISIG----QGCSLQHLNVSGCH 484 (608)
Q Consensus 412 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~L~l~~~~ 484 (608)
+.+..+...-+.|++|+++++..+++.+...++.. -..|+.|++++| .+++.+...++ ....|++|+|++ +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 34555666667888888876546777776666543 357888888875 47777766555 345688888887 4
Q ss_pred ccCHHHHHHHHhhC---CCCcEEeecCCC--CCChHHHHHHh---ccCCCcceeecccc
Q 007312 485 QIGDAGIMAIAKGC---PELNYLDVSVLQ--NLGDQAMVELG---KGCPLLKDVVLSHC 535 (608)
Q Consensus 485 ~~~~~~~~~~~~~~---~~L~~L~l~~~~--~l~~~~~~~l~---~~~~~L~~L~l~~c 535 (608)
.+++.|...+.+.+ +.|+.|+|+++. .+++.+...++ ..-++|+.|+++.+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 68888877776543 568888887653 36666544443 23477888887753
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.32 E-value=6.1e-09 Score=100.32 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=40.8
Q ss_pred CCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCCc
Q 007312 448 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPLL 527 (608)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 527 (608)
++|++|.+.+++.++......+..+++|+.|++++| .++... ...+.+|+.|.+.++.++.... . ...+++|
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp----~~~~~~L~~L~~l~~~~l~~lP--~-l~~l~~L 248 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP----SYGLENLKKLRARSTYNLKKLP--T-LEKLVAL 248 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC----SSSCTTCCEEECTTCTTCCCCC--C-TTTCCSC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC----hhhhccchHhhhccCCCcCcCC--C-chhCcCh
Confidence 466666666655555544444555566777777764 333210 0124556666655553332211 1 1245666
Q ss_pred ceeeccc
Q 007312 528 KDVVLSH 534 (608)
Q Consensus 528 ~~L~l~~ 534 (608)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 6666654
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=4.8e-08 Score=99.78 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=72.1
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHHHHHHhcCCCCc
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEALVAVGNQCLSLE 295 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 295 (608)
..|+.|+++++ .++.. +. +..+++|+.|++++|.++. ++..+..+++|+.|++++|.++.. +. ...+++|+
T Consensus 441 ~~L~~L~Ls~n-~l~~l--p~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l--p~-l~~l~~L~ 511 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVL--CH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV--DG-VANLPRLQ 511 (567)
T ss_dssp TTCSEEECTTS-CCSSC--CC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCC
T ss_pred cCceEEEecCC-CCCCC--cC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCCC--cc-cCCCCCCc
Confidence 35777777776 34332 12 3556777777777776662 223344677777777777776652 22 23467778
Q ss_pred EEEeccccCCChHH-HHHHhhcCCCCCeEecCCCCCCCH-HHHHHHHhcCCCCcEEEe
Q 007312 296 LLALYSFQQFTDKG-LHAVGKGCKKLKNLTLSDCYFLSD-MGLEAIATGCKELTHLEI 351 (608)
Q Consensus 296 ~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l 351 (608)
.|++++ +.++... ...+ ..+++|+.|+++++..... .....+...+|+|+.|++
T Consensus 512 ~L~Ls~-N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCN-NRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCS-SCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCC-CCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 887776 3343322 2223 3478888888887762111 122233445788888753
No 138
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.28 E-value=8.1e-08 Score=85.42 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=24.8
Q ss_pred CCceeeccccCCCChhhHHHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCC
Q 007312 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRF 198 (608)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 198 (608)
+|+.|++.++ .+.... ...+..+++|++|+|++|.+.......+.. +++|++|++++
T Consensus 33 ~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~ 89 (220)
T 2v9t_B 33 TITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYG 89 (220)
T ss_dssp TCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCS
T ss_pred CCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCC
Confidence 5666666544 222110 112334556666666666554322222222 44455555544
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.18 E-value=2.1e-07 Score=88.75 Aligned_cols=205 Identities=19% Similarity=0.243 Sum_probs=121.4
Q ss_pred CcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCC----------h---------HHHHHHHhc--------C
Q 007312 369 CRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIG----------D---------DAICSIAEG--------C 421 (608)
Q Consensus 369 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------~---------~~~~~~~~~--------~ 421 (608)
.+++++|.+++ .+....+..+...+++|+.|+++++. +. . .-....+.+ |
T Consensus 24 ~~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEec--cccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhccccccccccc
Confidence 36899999986 35555555554448999999999863 32 0 000122345 7
Q ss_pred ccCcEEeccccc-ccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCc-------------------------
Q 007312 422 QNLKKLHIRRCY-KIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSL------------------------- 475 (608)
Q Consensus 422 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L------------------------- 475 (608)
++|++|.+.+.- .+++.. +..|++|+.|++..+. +...+...+....++
T Consensus 101 ~~L~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 101 QTLEKVILSEKIKNIEDAA----FKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp TTCCC-CBCTTCCEECTTT----TTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred CCCcEEECCccccchhHHH----hhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 888888887621 222222 3468899999998753 222111222222222
Q ss_pred -----------------------------cEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhccCCC
Q 007312 476 -----------------------------QHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKGCPL 526 (608)
Q Consensus 476 -----------------------------~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 526 (608)
+.+.+.+ .+.......+...|++|+.++++++ .++...-. ...+|++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-TFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-TTTTCTT
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-hhhCCCC
Confidence 2233322 1334445555556899999999886 34332211 2345889
Q ss_pred cceeecccccCccHHHHHHHHHcCCccC-eeecccCCCCCHHHHHHHHHcCCCCcEEEecceeeec
Q 007312 527 LKDVVLSHCRQITDVGLSHLVKNCRMLE-SCHMVYCPGITAAGVATVVSGCANIKKVMVEKWKVSE 591 (608)
Q Consensus 527 L~~L~l~~c~~l~~~~~~~~~~~~~~L~-~L~l~~c~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 591 (608)
|+.|++.+. ++..+-..| .+|++|+ .+.+.+ .++..+- ..+.+|++|+.|++.++.+..
T Consensus 252 L~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~-~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 252 LLKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA--SVTAIEF-GAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CCEEECCTT--CCEECTTTT-TTCTTCCEEEEECT--TCCEECT-TTTTTCTTEEEEEECSSCCCE
T ss_pred CCEEECCcc--cceehHHHh-hCChhccEEEEEcc--cceEEch-hhhhCCccCCEEEeCCCccCc
Confidence 999999872 665554444 4788898 898876 3433221 235689999999998876653
No 140
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.15 E-value=5.7e-07 Score=79.87 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=36.7
Q ss_pred cCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccc
Q 007312 9 TCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTT 49 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (608)
+.||+||+.+||+||+ ++|++++++|||+|+.++.....|
T Consensus 6 ~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D~~LW 45 (312)
T 3l2o_B 6 TRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRDPILW 45 (312)
T ss_dssp HHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhccchHH
Confidence 5799999999999999 999999999999999998776555
No 141
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.05 E-value=2.1e-06 Score=77.53 Aligned_cols=40 Identities=30% Similarity=0.532 Sum_probs=35.8
Q ss_pred cCCChHHHHHHHhhcCChhhhh-hhhhccHhHHHhhhhcccc
Q 007312 9 TCLPDEVILEIFRHLDSKASRD-ACSLVCRRWLTLERLSRTT 49 (608)
Q Consensus 9 ~~LP~eil~~If~~L~~~~d~~-~~~~vcr~W~~~~~~~~~~ 49 (608)
+.||+||+.+||+||| .++++ ++++|||+|+.++.....|
T Consensus 52 ~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~~~~~w 92 (297)
T 2e31_A 52 AELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVDGAPLW 92 (297)
T ss_dssp TSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHTSHHHH
T ss_pred hhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhcChHHH
Confidence 4799999999999999 99999 9999999999997665433
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.87 E-value=1.1e-06 Score=92.83 Aligned_cols=106 Identities=15% Similarity=0.069 Sum_probs=46.3
Q ss_pred hcCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcC
Q 007312 393 RGCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG 472 (608)
Q Consensus 393 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 472 (608)
..+++|+.|+++++. +.. +......+++|+.|+|++| .+. .+......+++|+.|+|++|. +. .....+..+
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~~~~l 292 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LT-SLPAELGSC 292 (727)
T ss_dssp -CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CS-SCCSSGGGG
T ss_pred ccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CC-ccChhhcCC
Confidence 345566666666542 221 1111113555666666554 222 111112345556666665543 33 223334445
Q ss_pred CCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCC
Q 007312 473 CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL 509 (608)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 509 (608)
.+|+.|+|++| .++. +...+..+++|+.|+|++|
T Consensus 293 ~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTS
T ss_pred CCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCC
Confidence 55555555553 2321 1111234555555555555
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.79 E-value=6.4e-06 Score=71.24 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=14.8
Q ss_pred CCCcEEEeccCCCCChHHHHHHHhcCccCcEEecccc
Q 007312 396 KSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRC 432 (608)
Q Consensus 396 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 432 (608)
++|+.|+++++ .++. +...+..+++|+.|+++++
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N 64 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNN 64 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSS
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCC
Confidence 45566666553 2221 1122233445555555443
No 144
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.78 E-value=2.2e-06 Score=74.19 Aligned_cols=82 Identities=18% Similarity=0.116 Sum_probs=33.6
Q ss_pred CCcEEEeccCCCCChHHHHHHHhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCcc
Q 007312 397 SLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQ 476 (608)
Q Consensus 397 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 476 (608)
+|+.|+++++ .++.......+..+++|++|+++++ .+.... ......+++|++|+++++. +.......+..+++|+
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIE-PNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCC
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcC-HhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCC
Confidence 6666666654 2222111111234555555555554 222110 0111234555555555532 3333333333444455
Q ss_pred EEEecC
Q 007312 477 HLNVSG 482 (608)
Q Consensus 477 ~L~l~~ 482 (608)
+|++++
T Consensus 106 ~L~L~~ 111 (192)
T 1w8a_A 106 TLNLYD 111 (192)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 555544
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.74 E-value=3.6e-06 Score=71.84 Aligned_cols=35 Identities=20% Similarity=0.069 Sum_probs=15.8
Q ss_pred CCCCcEEecccCCcCChHHHHhhhcCCCccEEEecC
Q 007312 447 CNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 482 (608)
Q Consensus 447 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 482 (608)
+++|++|+++++. +.......+..+++|+.|++++
T Consensus 51 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 51 LTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred cccccEEECCCCc-ceEeChhHccCCCccCEEECCC
Confidence 4555555555532 3332222333444455555554
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.73 E-value=3.7e-06 Score=72.76 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=16.6
Q ss_pred cCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCC
Q 007312 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (608)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (608)
.+++|++|++++|.++..... .+..+++|+.|+++.+.+
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKI 90 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCC
T ss_pred cCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcC
Confidence 344555555555444332111 122344555555544444
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.72 E-value=9.6e-06 Score=70.13 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=17.2
Q ss_pred cCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
.+++|++|++++|.++..... .+..+++|+.|+++.|.+.
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSNQ-SFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCC
T ss_pred cccCCCEEECCCCcCCEeCHh-HccCCCCCCEEECCCCccC
Confidence 445555555555544432211 1223445555555544443
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.72 E-value=8.3e-06 Score=69.57 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=17.8
Q ss_pred cCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCC
Q 007312 240 HCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINV 279 (608)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 279 (608)
.+++|++|++++|.+..... ..+..+++|+.|+++.|.+
T Consensus 98 ~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 98 KLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred CCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCe
Confidence 34555555555555442211 1222345555555554443
No 149
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.55 E-value=2.1e-05 Score=79.03 Aligned_cols=45 Identities=29% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCCcccCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhh-cccce
Q 007312 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERL-SRTTL 50 (608)
Q Consensus 4 ~~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~-~~~~~ 50 (608)
.|.+ +.||+||+.+||+||+ .++++++++|||+|++++.. ...|.
T Consensus 12 ~d~~-~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~~w~ 57 (464)
T 3v7d_B 12 RDLI-TSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRKSTSLWK 57 (464)
T ss_dssp CCHH-HHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTTCHHHHH
T ss_pred cCCh-HHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4666 4899999999999999 99999999999999999765 44443
No 150
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.48 E-value=2e-05 Score=78.35 Aligned_cols=47 Identities=30% Similarity=0.424 Sum_probs=40.3
Q ss_pred CCCCcccCCChH----HHHHHHhhcCChhhhhhhhhccHhHHHhhhhccccee
Q 007312 3 GHDRINTCLPDE----VILEIFRHLDSKASRDACSLVCRRWLTLERLSRTTLR 51 (608)
Q Consensus 3 ~~~~~~~~LP~e----il~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~~~ 51 (608)
..|.+ +.||+| |+.+||+||+ .+++.++++|||+|++++.....|..
T Consensus 7 ~~d~~-~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~~~~w~~ 57 (435)
T 1p22_A 7 QRDFI-TALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTSDGMLWKK 57 (435)
T ss_dssp CCCHH-HHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred hcChH-HHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 35666 489999 9999999999 99999999999999999876655543
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.41 E-value=4.5e-05 Score=80.63 Aligned_cols=116 Identities=14% Similarity=0.020 Sum_probs=67.2
Q ss_pred HHHHHhCCCccEEEccCCccChHHHHHHHhhCCCCceeecCCCCCCCc-hHHHHHHhhcCCCccEEecCCCCCcChHHHH
Q 007312 157 MSLAQKCIHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFCEGLTD-TGLVDLAHGCGKSLKSLGIAACVKITDVSLE 235 (608)
Q Consensus 157 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 235 (608)
...+..+++|+.|+|++|.+.. ....+. .+++|++|+|+++..... ..+ ..+++|+.|+|++| .++.. +
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~-----~~l~~L~~L~Ls~N-~l~~l--p 286 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFN-ISANIF-KYDFLTRLYLNGNSLTELPAEI-----KNLSNLRVLDLSHN-RLTSL--P 286 (727)
T ss_dssp -----CCCCCCEEECTTSCCSC-CCGGGG-GCCSCSCCBCTTSCCSCCCGGG-----GGGTTCCEEECTTS-CCSSC--C
T ss_pred hhhhccCCCCcEEECCCCCCCC-CChhhc-CCCCCCEEEeeCCcCcccChhh-----hCCCCCCEEeCcCC-cCCcc--C
Confidence 3445567788888888877652 222233 377888888887632111 111 12277888888877 34421 2
Q ss_pred HHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCChHHH
Q 007312 236 AVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVTDEAL 284 (608)
Q Consensus 236 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 284 (608)
..+..+++|++|+|++|.++.. ...+..+++|+.|++++|.+.....
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTL--PWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCC--CSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred hhhcCCCCCCEEECCCCCCCcc--ChhhhcCCCccEEeCCCCccCCCCh
Confidence 2235677888888888776532 2224467788888888777765443
No 152
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.37 E-value=8.4e-05 Score=74.12 Aligned_cols=44 Identities=25% Similarity=0.371 Sum_probs=38.0
Q ss_pred CCCcccCCChHHHHHHHhhcCChhhhhhhhhccHhHHHhhhhcccc
Q 007312 4 HDRINTCLPDEVILEIFRHLDSKASRDACSLVCRRWLTLERLSRTT 49 (608)
Q Consensus 4 ~~~~~~~LP~eil~~If~~L~~~~d~~~~~~vcr~W~~~~~~~~~~ 49 (608)
.|.+ +.||+|++.+||+||+ .+|+.++++|||+|++++.....|
T Consensus 16 ~d~~-~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~~~~~w 59 (445)
T 2ovr_B 16 RDFI-SLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAEDNLLW 59 (445)
T ss_dssp CSTT-TSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHTCSHHH
T ss_pred CChh-HHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcCchhHh
Confidence 5666 5899999999999999 999999999999999997554333
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.10 E-value=2.1e-06 Score=84.03 Aligned_cols=54 Identities=17% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCccEEecCCCCCcChHHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeee
Q 007312 216 KSLKSLGIAACVKITDVSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKL 274 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 274 (608)
.+|+++.+.. .++..+-. .+.+|++|+.+++..+ +...+- ..+.++++|+.+.+
T Consensus 71 ~~L~~i~lp~--~i~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~-~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 71 RKVTEIKIPS--TVREIGEF-AFENCSKLEIINIPDS-VKMIGR-CTFSGCYALKSILL 124 (394)
T ss_dssp TTEEEEECCT--TCCEECTT-TTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCCCCC
T ss_pred CCceEEEeCC--CccCcchh-HhhCCCCCcEEEeCCC-ceEccc-hhhcccccchhhcc
Confidence 6777777754 23322212 2256777888777532 221111 12234556666554
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.05 E-value=0.002 Score=57.94 Aligned_cols=84 Identities=24% Similarity=0.237 Sum_probs=38.6
Q ss_pred hcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChH-HHHhhhcCCCccEEEecCCcccCH------HHH
Q 007312 419 EGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDE-ALISIGQGCSLQHLNVSGCHQIGD------AGI 491 (608)
Q Consensus 419 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~------~~~ 491 (608)
+.+++|+.|+++++.-..-.++......+++|+.|++++|. +.+. .+..+..+ +|++|++++|+ ++. ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNS-LCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTST-TGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCc-CccccCcchhHH
Confidence 34555555555554211112222333456666666666643 3332 22222222 56666666643 321 112
Q ss_pred HHHHhhCCCCcEEe
Q 007312 492 MAIAKGCPELNYLD 505 (608)
Q Consensus 492 ~~~~~~~~~L~~L~ 505 (608)
..+...+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 23344566666665
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.94 E-value=0.0015 Score=58.78 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=27.3
Q ss_pred CCccEEecCCCCCcCh-HHHHHHHhcCCCCCEEECCCCccchhhHHHHHhcCCccceeeecccCCC
Q 007312 216 KSLKSLGIAACVKITD-VSLEAVGSHCKSLETLSLDSEFIHNKGVHAVAQGCPLLRVLKLQCINVT 280 (608)
Q Consensus 216 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 280 (608)
++|++|+|+++ .+.. .++......+++|+.|+|++|.+...........+ +|++|.+.+|.+.
T Consensus 170 ~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 170 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp TTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred CCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 55555555554 2222 11222223456666666665555443111111112 5555555555443
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.91 E-value=0.0002 Score=60.45 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=14.9
Q ss_pred CCCcEEecccCCcCChHHHHhhhcCCCccEEEecC
Q 007312 448 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 482 (608)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 482 (608)
++|+.|+++++. +.......+..+++|+.|++++
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 66 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNS 66 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCC
Confidence 344555554432 3333233344444455555554
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.91 E-value=0.00025 Score=59.66 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=14.9
Q ss_pred CCccEEEccCCccChHHHHHHHhhCCCCceeecCC
Q 007312 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRF 198 (608)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 198 (608)
++|++|++++|.+.......+. .+++|++|++++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~ 63 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDN 63 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCS
T ss_pred CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCC
Confidence 4555566655554422111222 244455555544
No 158
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.91 E-value=0.00021 Score=60.18 Aligned_cols=34 Identities=12% Similarity=0.018 Sum_probs=14.7
Q ss_pred CCCcEEecccCCcCChHHHHhhhcCCCccEEEecC
Q 007312 448 NSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSG 482 (608)
Q Consensus 448 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 482 (608)
++|+.|+++++ .+.......+..+.+|+.|++++
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~ 63 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN 63 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCC
Confidence 34444555442 23333333344444455555554
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.89 E-value=0.00027 Score=59.72 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=15.7
Q ss_pred CCccEEEccCCccChHHHHHHHhhCCCCceeecCCC
Q 007312 164 IHLKSLDLQGCYVGDQGLAAVGKVCNQLEDLNLRFC 199 (608)
Q Consensus 164 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 199 (608)
++|++|++++|.+.......+. .+++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N 67 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSN 67 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS
T ss_pred CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCC
Confidence 4566666666554422111221 2444555555443
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.84 E-value=2.9e-05 Score=75.56 Aligned_cols=216 Identities=15% Similarity=0.173 Sum_probs=102.5
Q ss_pred CCcEEEecCCCCCChhHHHHHHhcCcccceEecccccccChHHHHHHHhcCCCCcEEEeccCCCCChHHHHHHHhcCccC
Q 007312 345 ELTHLEINGCHNIGTMGLESIGKFCRNLTELALLYCQRIGNLALLEVGRGCKSLQALHLVDCSSIGDDAICSIAEGCQNL 424 (608)
Q Consensus 345 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 424 (608)
+|+.+.+.. .+...+-. ....|++|+.+++.. +.+...+-..+ .+.+|+.+.+... +...+ ...+.+|++|
T Consensus 158 ~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~-n~l~~I~~~aF--~~~~L~~l~lp~~--l~~I~-~~aF~~~~~L 228 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSK-TKITKLPASTF--VYAGIEEVLLPVT--LKEIG-SQAFLKTSQL 228 (401)
T ss_dssp CCCEEECCT--TCCEECSS-TTTTCTTCCEEECTT-SCCSEECTTTT--TTCCCSEEECCTT--CCEEC-TTTTTTCTTC
T ss_pred CceEEEeCC--CccEehHH-HhhCcccCCeeecCC-CcceEechhhE--eecccCEEEeCCc--hheeh-hhHhhCCCCC
Confidence 466666653 12111111 123578888888865 33333222222 2577888777642 22111 1223456777
Q ss_pred cEEecccc-cccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccC-----HHHHHHHHhhC
Q 007312 425 KKLHIRRC-YKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIG-----DAGIMAIAKGC 498 (608)
Q Consensus 425 ~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~ 498 (608)
+.+.+... ..++...+. . .+|+.+.+.. .+...+..++..+.+|+.+.+.++. +. .. -...+.+|
T Consensus 229 ~~l~l~~~l~~I~~~aF~----~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I-~~~aF~~c 299 (401)
T 4fdw_A 229 KTIEIPENVSTIGQEAFR----E-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMI-HPYCLEGC 299 (401)
T ss_dssp CCEECCTTCCEECTTTTT----T-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEE-CTTTTTTC
T ss_pred CEEecCCCccCccccccc----c-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEE-CHHHhhCC
Confidence 77777542 112222221 1 4677777743 2444444555556667777776532 11 00 01123456
Q ss_pred CCCcEEeecCC-CCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeecccCCCCCHHHHHHHHHcCC
Q 007312 499 PELNYLDVSVL-QNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVYCPGITAAGVATVVSGCA 577 (608)
Q Consensus 499 ~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~~~~ 577 (608)
++|+.+.+.+. ..+++.. ..+|++|+.+.+.. .++..+...| .+| +|+.+.+.++..... . ...+.+++
T Consensus 300 ~~L~~l~l~~~i~~I~~~a----F~~c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n~~~~l-~-~~~F~~~~ 369 (401)
T 4fdw_A 300 PKLARFEIPESIRILGQGL----LGGNRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGTTPPQV-F-EKVWYGFP 369 (401)
T ss_dssp TTCCEECCCTTCCEECTTT----TTTCCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEECCSSCCBC-C-CSSCCCSC
T ss_pred ccCCeEEeCCceEEEhhhh----hcCCCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEcCCCCccc-c-cccccCCC
Confidence 77777776642 1122222 22466777777654 2444333333 245 677776665421110 0 01123343
Q ss_pred -CCcEEEeccee
Q 007312 578 -NIKKVMVEKWK 588 (608)
Q Consensus 578 -~L~~l~l~~~~ 588 (608)
++..|++..+.
T Consensus 370 ~~l~~l~vp~~~ 381 (401)
T 4fdw_A 370 DDITVIRVPAES 381 (401)
T ss_dssp TTCCEEEECGGG
T ss_pred CCccEEEeCHHH
Confidence 56666666554
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.75 E-value=1.9e-05 Score=77.22 Aligned_cols=10 Identities=10% Similarity=0.591 Sum_probs=4.5
Q ss_pred CCCccEEEcc
Q 007312 163 CIHLKSLDLQ 172 (608)
Q Consensus 163 ~~~L~~L~l~ 172 (608)
|.+|+++.+.
T Consensus 70 c~~L~~i~lp 79 (394)
T 4fs7_A 70 CRKVTEIKIP 79 (394)
T ss_dssp CTTEEEEECC
T ss_pred CCCceEEEeC
Confidence 4444444443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.41 E-value=9.5e-05 Score=71.89 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=25.2
Q ss_pred cCCCCcEEecccCCcC----ChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecC
Q 007312 446 HCNSLTELSLRFCDRV----GDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSV 508 (608)
Q Consensus 446 ~~~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 508 (608)
.|++|+.+.+.++... .......+..+.+|+.+.+.+ .++..+-. .+.+|++|+.+.+.+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~-aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG-LLGGNRKVTQLTIPA 332 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTT-TTTTCCSCCEEEECT
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhh-hhcCCCCccEEEECc
Confidence 4556666655442210 012223334444566665553 12211111 123455666666543
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.07 E-value=0.0007 Score=64.76 Aligned_cols=88 Identities=19% Similarity=0.154 Sum_probs=60.5
Q ss_pred HhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCCCCCChHHHHHHhcc
Q 007312 444 GEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVLQNLGDQAMVELGKG 523 (608)
Q Consensus 444 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 523 (608)
...+++|+.|+|++++.+.......+..+.+|+.|+|++| .++... ...+.++++|+.|+|++| .++.... .....
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~ 102 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFN-ALESLSW-KTVQG 102 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSS-CCSCCCS-TTTCS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCC-ccceeCH-HHccc
Confidence 4456789999998645677766677888889999999985 555422 223356899999999998 4543211 11222
Q ss_pred CCCcceeeccccc
Q 007312 524 CPLLKDVVLSHCR 536 (608)
Q Consensus 524 ~~~L~~L~l~~c~ 536 (608)
++ |+.|++.+++
T Consensus 103 ~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 103 LS-LQELVLSGNP 114 (347)
T ss_dssp CC-CCEEECCSSC
T ss_pred CC-ceEEEeeCCC
Confidence 33 9999998854
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.77 E-value=0.0023 Score=61.13 Aligned_cols=88 Identities=18% Similarity=0.076 Sum_probs=61.0
Q ss_pred HhcCccCcEEecccccccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhh
Q 007312 418 AEGCQNLKKLHIRRCYKIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKG 497 (608)
Q Consensus 418 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 497 (608)
+..+++|+.|+++++..+..... ..+..+++|+.|+|++| .+.......+..+++|+.|+|++| .++... ...+..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~ 102 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN-ALESLS-WKTVQG 102 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS-CCSCCC-STTTCS
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC-ccceeC-HHHccc
Confidence 55678999999986224442211 12346899999999996 577766677888899999999995 454211 112222
Q ss_pred CCCCcEEeecCCC
Q 007312 498 CPELNYLDVSVLQ 510 (608)
Q Consensus 498 ~~~L~~L~l~~~~ 510 (608)
++ |+.|++.+|+
T Consensus 103 ~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 103 LS-LQELVLSGNP 114 (347)
T ss_dssp CC-CCEEECCSSC
T ss_pred CC-ceEEEeeCCC
Confidence 33 9999999985
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.36 E-value=0.02 Score=55.65 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=5.8
Q ss_pred cCccCcEEecc
Q 007312 420 GCQNLKKLHIR 430 (608)
Q Consensus 420 ~~~~L~~L~l~ 430 (608)
.|.+|+.+.+.
T Consensus 263 ~c~~L~~i~lp 273 (394)
T 4gt6_A 263 SCAYLASVKMP 273 (394)
T ss_dssp TCSSCCEEECC
T ss_pred ecccccEEecc
Confidence 35555555553
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=84.95 E-value=0.28 Score=47.46 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=16.3
Q ss_pred CCceeeccccCCCChhhHHHHHHhCCCccEEEccCC
Q 007312 139 KLEKLSLIWCSNISSLGLMSLAQKCIHLKSLDLQGC 174 (608)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 174 (608)
.|+++.+... +...+ ...+..|.+|+++.+.++
T Consensus 65 ~L~sI~iP~s--vt~Ig-~~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIG-SNAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp CCCEEEECTT--CCEEC-TTTTTTCTTCCEEEEGGG
T ss_pred cCEEEEECCC--eeEEh-HHHhhCCccCceEeecCC
Confidence 4677766531 11110 112345677777776543
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.21 E-value=0.078 Score=51.06 Aligned_cols=125 Identities=19% Similarity=0.284 Sum_probs=74.9
Q ss_pred cCccCcEEeccccc-ccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcCCCccEEEecCCcccCHHHHHHHHhhC
Q 007312 420 GCQNLKKLHIRRCY-KIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQGCSLQHLNVSGCHQIGDAGIMAIAKGC 498 (608)
Q Consensus 420 ~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 498 (608)
.+.+|+.+.+.... .+... ....+..|+.+.+... +...+...+....+|+.+.+... +...+. ..+..|
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~-~aF~~c 285 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPY-LLCSGC 285 (379)
T ss_dssp TCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECT-TTTTTC
T ss_pred cccccceeeeccceeEEccc----cccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccc-cccccc
Confidence 46788888875421 12211 1235788888888652 44444455566667888888652 322211 233568
Q ss_pred CCCcEEeecCC--CCCChHHHHHHhccCCCcceeecccccCccHHHHHHHHHcCCccCeeeccc
Q 007312 499 PELNYLDVSVL--QNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHLVKNCRMLESCHMVY 560 (608)
Q Consensus 499 ~~L~~L~l~~~--~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 560 (608)
++|+.+.+.++ ..|++..+ .+|++|+.+.|.. .++..+-.++ .+|.+|+.+.+..
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip~ 342 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTT----TTCTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCCT
T ss_pred cccccccccccccceehhhhh----cCCCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEECC
Confidence 88999988764 22444333 3578888888865 2554444444 3688888887753
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=74.88 E-value=0.33 Score=46.60 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=79.3
Q ss_pred cCCCCcEEEeccCCCCChHHHHHHHhcCccCcEEeccccc-ccChHHHHHHHhcCCCCcEEecccCCcCChHHHHhhhcC
Q 007312 394 GCKSLQALHLVDCSSIGDDAICSIAEGCQNLKKLHIRRCY-KIGNNGIVAVGEHCNSLTELSLRFCDRVGDEALISIGQG 472 (608)
Q Consensus 394 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 472 (608)
.+.+|+.+.+... +...+ ...+..+.+|+.+.+...- .++.. ....+.+|+.+.+.. .+...+...+..+
T Consensus 215 ~~~~l~~i~~~~~--~~~i~-~~~f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~--~i~~i~~~aF~~c 285 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLG-DGAFYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYA--KVKTVPYLLCSGC 285 (379)
T ss_dssp TCSSCSEEECCTT--CCEEC-TTTTTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECC--CCSEECTTTTTTC
T ss_pred cccccceeeeccc--eeEEc-cccccCCccceEEEcCCCccEeCcc----ccceeehhccccccc--cceeccccccccc
Confidence 4566777766542 11111 1122457889999886531 22221 234578899998865 2444455566677
Q ss_pred CCccEEEecCCcccCHHHHHHHHhhCCCCcEEeecCC-CCCChHHHHHHhccCCCcceeecccccCccHHHHHHH
Q 007312 473 CSLQHLNVSGCHQIGDAGIMAIAKGCPELNYLDVSVL-QNLGDQAMVELGKGCPLLKDVVLSHCRQITDVGLSHL 546 (608)
Q Consensus 473 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~~ 546 (608)
.+|+++.+.++ .++..+- ..+.+|.+|+.+.+... ..|++.++ .+|++|+.+.+.. .++..+-.++
T Consensus 286 ~~L~~i~l~~~-~i~~I~~-~aF~~c~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~ip~--~v~~I~~~aF 352 (379)
T 4h09_A 286 SNLTKVVMDNS-AIETLEP-RVFMDCVKLSSVTLPTALKTIQVYAF----KNCKALSTISYPK--SITLIESGAF 352 (379)
T ss_dssp TTCCEEEECCT-TCCEECT-TTTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCCCCCCT--TCCEECTTTT
T ss_pred ccccccccccc-ccceehh-hhhcCCCCCCEEEcCccccEEHHHHh----hCCCCCCEEEECC--ccCEEchhHh
Confidence 78999999763 2332111 23356899999999643 23444433 3588999998865 2544443333
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=59.31 E-value=6 Score=30.68 Aligned_cols=13 Identities=15% Similarity=0.176 Sum_probs=5.9
Q ss_pred CCCCcEEeecCCC
Q 007312 498 CPELNYLDVSVLQ 510 (608)
Q Consensus 498 ~~~L~~L~l~~~~ 510 (608)
+++|+.|+|++|+
T Consensus 54 l~~L~~L~L~~NP 66 (130)
T 3rfe_A 54 LPALRTAHLGANP 66 (130)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccccCEEEecCCC
Confidence 4444444444443
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=53.40 E-value=6.7 Score=30.42 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=5.4
Q ss_pred CCCEEECCCCcc
Q 007312 243 SLETLSLDSEFI 254 (608)
Q Consensus 243 ~L~~L~l~~~~~ 254 (608)
+|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l 43 (130)
T 3rfe_A 32 DTTELVLTGNNL 43 (130)
T ss_dssp TCSEEECTTSCC
T ss_pred CCCEEECCCCcC
Confidence 344444444443
Done!