BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007315
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 26/226 (11%)
Query: 10 GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 69
G P WL I+ R + + + F ++ + ++ ++GG II Q+ENE+G
Sbjct: 108 GLPWWLLKKKDIKLREQDPYYXERVKLFLNEVGKQLADLQI--SKGGNIIXVQVENEYGA 165
Query: 70 VEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK-----QDDAPDPVINTCN----GFYCE 120
+ I P + + + A G TGVP C +++A D ++ T N E
Sbjct: 166 --FGIDKPYISEIRDXVKQA-GF-TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDE 221
Query: 121 KFVPNQNYKPKM---WTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYH 177
+F + +P +E W+GWF +G+ TR AE+LV + SF + Y H
Sbjct: 222 QFKRLKELRPDTPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYXTH 280
Query: 178 GGTNFGRTSGGF------VATSYDYDAPIDEYGLLNEPKWGHLRDL 217
GGT+FG G TSYDYDAPI+E G + PK+ +R+L
Sbjct: 281 GGTSFGHWGGANFPNFSPTCTSYDYDAPINESGKVT-PKYLEVRNL 325
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 49/227 (21%)
Query: 371 QDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRP--GVNKISLLSTSVG 428
++ L I A QVF+NG+ T+ +L VKL P +++ +L + G
Sbjct: 396 KEQTLLITEAHDWAQVFLNGKKLATL------SRLKGEGVVKLPPLKEGDRLDILVEAXG 449
Query: 429 LPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEW 488
N G W G+ V L+ ++ ++ K Y I + S + ++
Sbjct: 450 RXNFGKGIYDWK-GITEKVELQ--SDKGVELVKDWQVYTIPVD--------YSFARDKQY 498
Query: 489 AQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPXXXXXXXX 548
Q + A+ QP +Y++TFN+ D L+ KG VW+NG +IGR+W
Sbjct: 499 KQQEN-AENQP-AYYRSTFNLNELGDTF-LNXXNWSKGXVWVNGHAIGRYWEIG------ 549
Query: 549 XXXXXXXTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWG 595
P Q Y VP WLK N +++ + G
Sbjct: 550 --------------------PQQTLY-VPGCWLKKGENEIIILDXAG 575
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 102/229 (44%), Gaps = 30/229 (13%)
Query: 10 GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 69
G P WL I R+ + + AA+ K+ ++ MK L GGP+I Q+ENE+G
Sbjct: 111 GLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKP--LLYQNGGPVITVQVENEYG- 167
Query: 70 VEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVIN--TCNGFYC-------- 119
A Y ++ Q + G V+ D A + G Y
Sbjct: 168 ---SYFACDFDYLRFL-QKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGS 223
Query: 120 ---EKFVPNQNYKPK---MWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINY 173
+ F+ + +PK + +E +TGW +G T E + S+ + G S +N
Sbjct: 224 NITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGAS-VNL 282
Query: 174 YMYHGGTNFGRTSGG---FVA--TSYDYDAPIDEYGLLNEPKWGHLRDL 217
YM+ GGTNF +G + A TSYDYDAP+ E G L E K+ LR++
Sbjct: 283 YMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTE-KYFALRNI 330
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 478 HTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAM----GKGMVWINGQ 533
H SG WA +S +Y F++P G L D KG VWING
Sbjct: 506 HRDSGHHDEAWAHNSS--NYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGF 563
Query: 534 SIGRHWP 540
++GR+WP
Sbjct: 564 NLGRYWP 570
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 8 FRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF 67
F G P WL + R+ + + A+ ++ ++++ + GG I++ Q+ENE+
Sbjct: 101 FGGLPAWL-LTKNMRIRSSDPAYIEAVGRYYDQLLPRLVPRL--LDNGGNILMMQVENEY 157
Query: 68 GPVEWDIGAPGKAYAKWAAQMAVG-------LNTGVPW-VMCKQDDAPDPVINTCNGF-- 117
G D KAY + Q+ + PW K + + F
Sbjct: 158 GSYGED-----KAYLRAIRQLMEECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGS 212
Query: 118 -------YCEKFVPNQNYK-PKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGS 169
++F K P M E W GWF + + TR ++L +V ++ G
Sbjct: 213 KAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGS- 271
Query: 170 FINYYMYHGGTNFGRTSGGFV--------ATSYDYDAPIDEYG 204
IN YM+HGGTNFG +G TSYDYDA +DE G
Sbjct: 272 -INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDEEG 313
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 104/259 (40%), Gaps = 58/259 (22%)
Query: 351 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKN 410
YL Y T+ N D+ E L+ I Q++++GQ T Y + + +
Sbjct: 385 YLLYRTETNWDAEEERLR--------IIDGRDRAQLYVDGQWVKTQYQTEIGEDIFYQGK 436
Query: 411 VKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGT-RDISKQKWTYKIG 469
K G++++ +L ++G N G F L KG+ G +D+ + +
Sbjct: 437 KK---GLSRLDILIENMGRVNYGHKF-------LADTQRKGIRTGVCKDLH-----FLLN 481
Query: 470 LKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVW 529
K L L +++++G + Q QP +Y F V D LD+ GKG+ +
Sbjct: 482 WKHYPLPL---DNPEKIDFSKGWT--QGQP-AFYAYDFTVEEPKDTY-LDLSEFGKGVAF 534
Query: 530 INGQSIGRHWPXXXXXXXXXXXXXXXTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLV 589
+NGQ++GR W P+ Y +P S+LK N ++
Sbjct: 535 VNGQNLGRFWNVG--------------------------PTLSLY-IPHSYLKEGANRII 567
Query: 590 VFEEWGGEPHWISLLKRTT 608
+FE G I L ++ T
Sbjct: 568 IFETEGQYKEEIHLTRKPT 586
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 101/262 (38%), Gaps = 46/262 (17%)
Query: 10 GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 69
GFP WL+ V G + RTD + A + I S++ ++ T GGP+IL Q ENE+
Sbjct: 127 GFPGWLQRVKG-KLRTDAPDYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSG 183
Query: 70 VEWDIGAPGKAYAKWAAQMAVGLNTGVPWV--------------------MCKQD----- 104
+ P K Y ++ A VP + + D
Sbjct: 184 AAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLG 243
Query: 105 -DAPDPVINTCNGFYCEKFVPNQNYKPKM---WTEAWTGWFTEFG-------SAVPTRPA 153
D P NG + N P E G F FG SA+
Sbjct: 244 FDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEF 303
Query: 154 EDLVFSVARFIQSGGSFINYYMYHGGTNFGRTS--GGFVATSYDYDAPIDEYGLLNEPKW 211
E + + + +G + N YM GGTN+G GG+ TSYDY A I E ++ K+
Sbjct: 304 ERVFYK--NNMAAGVTIFNIYMTFGGTNWGNLGHPGGY--TSYDYGASIREDRRIDREKY 359
Query: 212 GHLRDLHKAIKLCEPALVSVDP 233
L+ + +K+ P ++ P
Sbjct: 360 SELKLQGQFLKVS-PGYITATP 380
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 100/261 (38%), Gaps = 48/261 (18%)
Query: 10 GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF-G 68
GFP WL+ V GI RT + + A + I + + ++ T GGPIIL Q ENE+ G
Sbjct: 107 GFPGWLQRVDGI-LRTSDEAYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSG 163
Query: 69 PVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVM----CKQDDAPDPVINTCN--------- 115
G P +Y ++ A VP++ +AP +
Sbjct: 164 ACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPL 223
Query: 116 GFYC-------------------EKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDL 156
GF C E+ P+ P E G F +G + A L
Sbjct: 224 GFDCANPSTWPSGNLPTYFHTSHEQQSPS---TPYSLVEFQGGAFDPWGGVGFAKCAALL 280
Query: 157 VFSVARFIQS-----GGSFINYYMYHGGTNFGRTS--GGFVATSYDYDAPIDEYGLLNEP 209
R G +F+N YM GGTN+G GG+ TSYDY + I E +
Sbjct: 281 NHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGY--TSYDYGSAISESRNITRE 338
Query: 210 KWGHLRDLHKAIKLCEPALVS 230
K+ L+ L K+ LV+
Sbjct: 339 KYSELKLLGNFAKVSPGYLVA 359
>pdb|2WCD|A Chain A, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|B Chain B, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|C Chain C, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|D Chain D, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|E Chain E, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|F Chain F, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|G Chain G, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|H Chain H, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|I Chain I, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|J Chain J, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|K Chain K, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|L Chain L, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|M Chain M, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|N Chain N, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|O Chain O, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|P Chain P, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|Q Chain Q, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|R Chain R, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|S Chain S, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|T Chain T, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|U Chain U, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|V Chain V, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|W Chain W, Crystal Structure Of The Assembled Cytolysin A Pore
pdb|2WCD|X Chain X, Crystal Structure Of The Assembled Cytolysin A Pore
Length = 309
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 201 DEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLAN 260
DEY NE K +D+ IK+ + + ++ KSL + ++ FN+ SGK A +
Sbjct: 108 DEY---NEKKASAQKDI--LIKVLDDGITKLNEAQKSLLVSSQS--FNNASGKLLALDSQ 160
Query: 261 YDTTFSAKVSFGNAQYD 277
FS K S+ +Q D
Sbjct: 161 LTNDFSEKSSYFQSQVD 177
>pdb|1QOY|A Chain A, E.Coli Hemolysin E (Hlye, Clya, Shea)
Length = 318
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 201 DEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLAN 260
DEY NE K +D+ IK+ + + ++ KSL + ++ FN+ SGK A +
Sbjct: 117 DEY---NEKKASAQKDI--LIKVLDDGITKLNEAQKSLLVSSQS--FNNASGKLLALDSQ 169
Query: 261 YDTTFSAKVSFGNAQYD 277
FS K S+ +Q D
Sbjct: 170 LTNDFSEKSSYFQSQVD 186
>pdb|3U43|A Chain A, Crystal Structure Of The Colicin E2 Dnase-Im2 Complex
Length = 94
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 323 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 382
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATEEDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 383 ALQVFING 390
F G
Sbjct: 79 GKSGFKQG 86
>pdb|2WPT|A Chain A, The Crystal Structure Of Im2 In Complex With Colicin E9
Dnase
Length = 86
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 323 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 382
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATECDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 383 ALQVFING 390
F G
Sbjct: 79 GKSGFKQG 86
>pdb|2NO8|A Chain A, Nmr Structure Analysis Of The Colicin Immuntiy Protein Im2
Length = 86
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 323 ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGH 382
E A+ DDN ++ +E++ D SD ++Y D DS EG +K ++ W A +
Sbjct: 26 EGATEEDDNKLVRE--FERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKE-----WRAAN 78
Query: 383 ALQVFING 390
F G
Sbjct: 79 GKSGFKQG 86
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 321 IEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKN--GQDPLLTIW 378
++E D +T + L+EQ +L + I F+ N G+DP++ +
Sbjct: 26 VDERTGRLDPRIYTDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVR 85
Query: 379 SAGHALQVFIN 389
++VF+N
Sbjct: 86 QKNGEIRVFLN 96
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 314 AFSWQSYIE------ETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFL 367
+F W Y+E ST NTFT GL YL+ + T + +NE F+
Sbjct: 324 SFQWLKYLEYLNMDDNNIPSTKSNTFT--GLVSLKYLSLSKT-----FTSLQTLTNETFV 376
Query: 368 KNGQDPLLTIWSAGHALQVFINGQLS 393
PLLT+ + + NG S
Sbjct: 377 SLAHSPLLTLNLTKNHISKIANGTFS 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,389,648
Number of Sequences: 62578
Number of extensions: 897230
Number of successful extensions: 1982
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1939
Number of HSP's gapped (non-prelim): 52
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)