Query 007315
Match_columns 608
No_of_seqs 190 out of 1121
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 21:54:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 6E-153 1E-157 1288.9 54.0 606 2-608 122-728 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-116 2E-121 959.3 31.7 525 2-608 112-639 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.8E-58 3.9E-63 485.3 12.8 210 2-220 87-318 (319)
4 PF13364 BetaGal_dom4_5: Beta- 99.1 1.1E-10 2.4E-15 104.9 6.7 68 497-591 33-104 (111)
5 COG1874 LacA Beta-galactosidas 99.0 5.1E-11 1.1E-15 135.1 1.4 192 2-206 93-332 (673)
6 PF13364 BetaGal_dom4_5: Beta- 98.7 6E-08 1.3E-12 87.2 9.5 84 339-429 24-110 (111)
7 PF02837 Glyco_hydro_2_N: Glyc 98.2 7.7E-06 1.7E-10 78.0 10.4 99 346-450 64-164 (167)
8 PF02449 Glyco_hydro_42: Beta- 98.0 4.8E-05 1E-09 82.4 12.4 196 8-223 69-373 (374)
9 PRK10150 beta-D-glucuronidase; 96.9 0.0052 1.1E-07 70.9 10.8 100 347-452 62-179 (604)
10 PF02837 Glyco_hydro_2_N: Glyc 96.7 0.003 6.6E-08 60.1 6.1 67 497-591 66-136 (167)
11 PRK10340 ebgA cryptic beta-D-g 96.5 0.011 2.4E-07 72.1 10.1 95 349-452 108-206 (1021)
12 PRK09525 lacZ beta-D-galactosi 96.1 0.022 4.8E-07 69.5 10.0 95 349-452 119-218 (1027)
13 PRK10340 ebgA cryptic beta-D-g 93.4 0.19 4.1E-06 61.6 7.9 40 498-537 108-150 (1021)
14 PRK10150 beta-D-glucuronidase; 92.3 0.38 8.2E-06 55.7 8.1 41 498-538 64-107 (604)
15 PRK09525 lacZ beta-D-galactosi 91.8 0.23 5E-06 60.8 5.7 40 498-537 119-162 (1027)
16 PF14683 CBM-like: Polysacchar 76.0 2.5 5.5E-05 40.8 3.3 64 522-596 91-154 (167)
17 PF11324 DUF3126: Protein of u 72.6 11 0.00024 30.4 5.5 31 379-409 25-57 (63)
18 KOG0496 Beta-galactosidase [Ca 71.9 3.3 7.1E-05 47.6 3.3 36 189-224 324-360 (649)
19 PF06832 BiPBP_C: Penicillin-B 71.8 6.8 0.00015 33.3 4.6 49 374-430 35-84 (89)
20 PF08308 PEGA: PEGA domain; I 66.5 5.7 0.00012 32.2 2.8 39 374-422 3-41 (71)
21 smart00633 Glyco_10 Glycosyl h 58.6 20 0.00043 36.7 5.8 78 10-103 42-126 (254)
22 PF07691 PA14: PA14 domain; I 53.2 76 0.0016 28.7 8.3 70 351-428 47-122 (145)
23 PF08531 Bac_rhamnosid_N: Alph 53.1 64 0.0014 31.0 8.0 55 374-429 7-68 (172)
24 PLN03059 beta-galactosidase; P 52.3 60 0.0013 39.1 9.0 70 497-594 468-546 (840)
25 PF08531 Bac_rhamnosid_N: Alph 51.0 18 0.00038 35.0 3.7 54 517-592 7-63 (172)
26 KOG2024 Beta-Glucuronidase GUS 38.1 43 0.00094 34.7 4.3 52 346-398 84-135 (297)
27 COG1874 LacA Beta-galactosidas 36.3 28 0.00061 40.8 3.1 66 501-595 527-592 (673)
28 COG2884 FtsE Predicted ATPase 29.5 41 0.00089 33.6 2.5 17 524-540 55-71 (223)
29 cd02848 Chitinase_N_term Chiti 29.2 2.2E+02 0.0048 25.5 6.8 47 379-428 46-93 (106)
30 TIGR01676 GLDHase galactonolac 27.2 66 0.0014 36.9 4.0 41 57-97 375-418 (541)
31 PF09189 DUF1952: Domain of un 26.1 13 0.00027 30.9 -1.4 11 6-16 4-14 (78)
32 smart00633 Glyco_10 Glycosyl h 24.0 2.5E+02 0.0054 28.6 7.3 72 128-213 182-253 (254)
33 COG3693 XynA Beta-1,4-xylanase 23.6 2.1E+02 0.0046 30.7 6.6 81 10-104 108-195 (345)
34 PF11790 Glyco_hydro_cc: Glyco 23.5 5.5E+02 0.012 25.9 9.6 51 8-62 63-114 (239)
35 PF02836 Glyco_hydro_2_C: Glyc 22.4 3.4E+02 0.0075 28.1 8.1 124 2-142 75-212 (298)
36 smart00758 PA14 domain in bact 22.2 2.8E+02 0.0061 24.8 6.6 38 351-396 45-82 (136)
37 TIGR02148 Fibro_Slime fibro-sl 21.0 5.6E+02 0.012 22.3 8.3 26 374-400 21-46 (90)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=5.7e-153 Score=1288.90 Aligned_cols=606 Identities=80% Similarity=1.397 Sum_probs=552.5
Q ss_pred cccccCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccccCCCCcHHH
Q 007315 2 FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAY 81 (608)
Q Consensus 2 i~aEw~~GGlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~~~g~~d~~Y 81 (608)
|||||++||||+||+++|+|++||+||+||++|++|+++|+++|++++||+++||||||||||||||+|.+.++.+|++|
T Consensus 122 IcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Y 201 (840)
T PLN03059 122 ICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAY 201 (840)
T ss_pred eeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHH
Confidence 89999999999999999999999999999999999999999999877999999999999999999999987788889999
Q ss_pred HHHHHHHHHhcCCCcceEeecCCCCCCccccccCcccccccccCCCCCCceeeeeccccCCccCCCCCCCChHHHHHHHH
Q 007315 82 AKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVA 161 (608)
Q Consensus 82 ~~~L~~~~~~~g~~vp~~~~~~~~~~~~~~~t~ng~~~~~~~~~~p~~P~~~~Ef~~Gwf~~WG~~~~~~~~~~~~~~~~ 161 (608)
|+||++|++++|++||||||++.++++++++||||.+|+.|.+..+.+|+|++|||+|||+|||+++++++++|++.+++
T Consensus 202 l~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~ 281 (840)
T PLN03059 202 TKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVA 281 (840)
T ss_pred HHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHH
Confidence 99999999999999999999998788889999999888889887777999999999999999999999999999999999
Q ss_pred HHHHhCCceeeeeeeccCCCCCCCCCC-CccccCCCCCCCCcCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCccccCCC
Q 007315 162 RFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGK 240 (608)
Q Consensus 162 ~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~tSYDydAPi~E~G~~~t~ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~~ 240 (608)
++|++|+|++||||||||||||||+|+ +++|||||||||+|+|++|+|||.+||++|.+++.++++|+..+|....++.
T Consensus 282 ~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~ 361 (840)
T PLN03059 282 RFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGS 361 (840)
T ss_pred HHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCC
Confidence 999999998899999999999999998 5999999999999999995469999999999999888888777777777888
Q ss_pred CcceeEeccCCCceeeeeeccCCCceeEEEecCceecCCCCceeecCCcccccccccccccccccceeeeeccccccccc
Q 007315 241 NQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSY 320 (608)
Q Consensus 241 ~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 320 (608)
..++++|+... .|++|+.|++.+..++|+|++..|.||+|||+|||||+.++|+++++..|.+....++....+.|+.+
T Consensus 362 ~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~ 440 (840)
T PLN03059 362 NQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSY 440 (840)
T ss_pred ceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccceeecccccccccceee
Confidence 89999999766 79999999999999999999999999999999999999999999999777655544555555799999
Q ss_pred cccccCCCCCCCcccCchhhhhccCCCCcceEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEccc
Q 007315 321 IEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSL 400 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~Eql~~t~d~~GyvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~~~~~ 400 (608)
+|++...-...|++++.++||+++|+|.+||+||||+|.....+..++++..++|+|.+++|+++|||||+++|+.+++.
T Consensus 441 ~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~ 520 (840)
T PLN03059 441 NEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGEL 520 (840)
T ss_pred cccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeec
Confidence 99844332234889999999999999999999999999877665445666778899999999999999999999999987
Q ss_pred CCCceEEeeeeccCCCccEEEEEEecCCCccccccCCcccccccccEEEccccCCccccccCeeEEEecCcccccccccc
Q 007315 401 ENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTV 480 (608)
Q Consensus 401 ~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N~G~~~~~~~kGI~g~V~l~g~~~~~~~l~~~~W~~~~gl~ge~~~~~~~ 480 (608)
....++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|++.+.+..+|++|.|.|+++|.||.++++.+
T Consensus 521 ~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~ 600 (840)
T PLN03059 521 SNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTI 600 (840)
T ss_pred CCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCccceecccccc
Confidence 77788888888888999999999999999999999998999999999999987788899999999999999999998887
Q ss_pred CCCCCccccccCccCCCCCceEEEEEEECCCCCCCeEEecCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCccccc
Q 007315 481 SGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEK 560 (608)
Q Consensus 481 ~~~~~~~w~~~~~~~~~~~~~~Yr~~F~~~~~~d~~~Ld~~g~gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~ 560 (608)
++...++|.+.+..+..+|++|||++|++|++.||+||||++||||+|||||+||||||+.....+.|+.|+|+|.|+..
T Consensus 601 ~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~ 680 (840)
T PLN03059 601 TGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDK 680 (840)
T ss_pred CCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccch
Confidence 55567889765444445679999999999999999999999999999999999999999742113457999999999999
Q ss_pred ccccCCCCCceEEeecCcccccCCCcEEEEEEecCCCCCceEEEEEeC
Q 007315 561 KCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 608 (608)
Q Consensus 561 ~~~~~~~~PQqtlY~vP~~~L~~g~N~ivvfE~~g~~~~~i~l~~~~~ 608 (608)
||+||||+|||||||||++|||+|+|+||||||+|++|..|+|+++++
T Consensus 681 kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~ 728 (840)
T PLN03059 681 KCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTT 728 (840)
T ss_pred hhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeec
Confidence 999999999999999999999999999999999999999999999864
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-116 Score=959.32 Aligned_cols=525 Identities=58% Similarity=1.032 Sum_probs=472.4
Q ss_pred cccccCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccccCCCCcHHH
Q 007315 2 FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAY 81 (608)
Q Consensus 2 i~aEw~~GGlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~~~g~~d~~Y 81 (608)
|||||++||||.||..+|+|.+||+|++|+++|++|+++|+++++ ||+++|||||||+|||||||.+.+.|++..+.|
T Consensus 112 IcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y 189 (649)
T KOG0496|consen 112 ICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENEYGNYLRALGAEGKSY 189 (649)
T ss_pred EEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999 999999999999999999999888788888999
Q ss_pred HHHHHHHHHhcCCCcceEeecCCCCCCccccccCcccc-cccc-cCCCCCCceeeeeccccCCccCCCCCCCChHHHHHH
Q 007315 82 AKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFS 159 (608)
Q Consensus 82 ~~~L~~~~~~~g~~vp~~~~~~~~~~~~~~~t~ng~~~-~~~~-~~~p~~P~~~~Ef~~Gwf~~WG~~~~~~~~~~~~~~ 159 (608)
+.|-..|+...+.+|||++|.+.++|+.++++|||++| +.|. +++|++|+|+||||+|||++||++++.|++++++..
T Consensus 190 ~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~ 269 (649)
T KOG0496|consen 190 LKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGGPHPCRPVEDIALS 269 (649)
T ss_pred hccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhhCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999989999999999 8887 889999999999999999999999999999999999
Q ss_pred HHHHHHhCCceeeeeeeccCCCCCCCCCCCccccCCCCCCCCcCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCccccCC
Q 007315 160 VARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLG 239 (608)
Q Consensus 160 ~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDydAPi~E~G~~~t~ky~~lr~l~~~~~~~~~~l~~~~p~~~~~~ 239 (608)
+++++++|+|++||||||||||||++||.+.+|||||||||+ |..++|||.++|.+|..+..+++.+....+...
T Consensus 270 va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~--- 344 (649)
T KOG0496|consen 270 VARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTA--- 344 (649)
T ss_pred HHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhcCccccccCcccc---
Confidence 999999998889999999999999999999999999999999 999999999999999999988887765554332
Q ss_pred CCcceeEeccCCCceeeeeeccCCCceeEEEecCceecCCCCceeecCCcccccccccccccccccceeeeecccccccc
Q 007315 240 KNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQS 319 (608)
Q Consensus 240 ~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 319 (608)
.|....+.|..|+.|++......+.|.+..+.+++|+++|+++|++++|+|+++.. .|..
T Consensus 345 ------kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~--------------~~~~ 404 (649)
T KOG0496|consen 345 ------KYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA--------------QWIS 404 (649)
T ss_pred ------cccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc--------------cccc
Confidence 34443456999999999888888999998999999999999999999999987632 1545
Q ss_pred ccccccCCCCCCCcccCchhhhhccCCCCcceEEEEEEEecCCCcccccCCCCCceEec-CcceEEEEEECCEEEEEEEc
Q 007315 320 YIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIW-SAGHALQVFINGQLSGTVYG 398 (608)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~Eql~~t~d~~GyvlYrt~~~~~~~~~~~~~~~~~~L~v~-~~~d~a~vfvng~~~G~~~~ 398 (608)
+.|+++ +|..+ |.+||++|++.++.++.+ ...|+|. +++|++||||||+++|++++
T Consensus 405 ~~e~~~-------------~~~~~---~~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~~~hVfvNg~~~G~~~g 461 (649)
T KOG0496|consen 405 FTEPIP-------------SEAVG---QSFGGLLEQTNLTKDKSD-------TTSLKIPLSLGHALHVFVNGEFAGSLHG 461 (649)
T ss_pred ccCCCc-------------ccccc---CcceEEEEEEeeccccCC-------CceEeecccccceEEEEECCEEeeeEec
Confidence 545433 46664 488999999999866543 2458888 99999999999999999999
Q ss_pred ccCCCceEEeeeeccCCCccEEEEEEecCCCccccccCCcccccccccEEEccccCCccccccCeeEEEecCcccccccc
Q 007315 399 SLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLH 478 (608)
Q Consensus 399 ~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~N~G~~~~~~~kGI~g~V~l~g~~~~~~~l~~~~W~~~~gl~ge~~~~~ 478 (608)
+.....+.+..++.+..|.|+|+|||||+||+||| +++++.|||+|+|+|+|. ++++.++|.|+++|.+|....|
T Consensus 462 ~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~~~~ 536 (649)
T KOG0496|consen 462 NNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKLGLH 536 (649)
T ss_pred cccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccceeecceecccccchhhcc
Confidence 87777788888888899999999999999999999 778999999999999987 4777778999999999999999
Q ss_pred ccCCCCCccccccCccCCCCCceEEEEEEECCCCCCCeEEecCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCccc
Q 007315 479 TVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYT 558 (608)
Q Consensus 479 ~~~~~~~~~w~~~~~~~~~~~~~~Yr~~F~~~~~~d~~~Ld~~g~gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~ 558 (608)
.+++.++++|......+..+|.+||+ +|++|++.+|++|||.|||||+|||||+||||||++ .|
T Consensus 537 ~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~---~G------------ 600 (649)
T KOG0496|consen 537 TEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPS---FG------------ 600 (649)
T ss_pred ccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCC---CC------------
Confidence 99888889998775444346889999 999999988999999999999999999999999997 69
Q ss_pred ccccccCCCCCceEEeecCcccccCCCcEEEEEEecCCCCCceEEEEEeC
Q 007315 559 EKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 608 (608)
Q Consensus 559 ~~~~~~~~~~PQqtlY~vP~~~L~~g~N~ivvfE~~g~~~~~i~l~~~~~ 608 (608)
||+++| ||++|||++.|.||||||++++|..|+|+++.+
T Consensus 601 ----------~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~ 639 (649)
T KOG0496|consen 601 ----------PQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPV 639 (649)
T ss_pred ----------CceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEe
Confidence 987755 999999999999999999999999999998863
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.8e-58 Score=485.28 Aligned_cols=210 Identities=39% Similarity=0.652 Sum_probs=158.0
Q ss_pred cccccCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccccCCCCcHHH
Q 007315 2 FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAY 81 (608)
Q Consensus 2 i~aEw~~GGlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~~~g~~d~~Y 81 (608)
|||||++||||+||++++++++||+||.||++|++|+++|+++|+ ++|+++||||||||||||||++ .+|++|
T Consensus 87 i~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~-----~~~~~Y 159 (319)
T PF01301_consen 87 ICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY-----GTDRAY 159 (319)
T ss_dssp --TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----SS-HHH
T ss_pred ecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----cccHhH
Confidence 899999999999999999999999999999999999999999999 9999999999999999999965 469999
Q ss_pred HHHHHHHHHhcCCC-cceEeecCCC--------CCCccccccCcccccc--------cccCCCCCCceeeeeccccCCcc
Q 007315 82 AKWAAQMAVGLNTG-VPWVMCKQDD--------APDPVINTCNGFYCEK--------FVPNQNYKPKMWTEAWTGWFTEF 144 (608)
Q Consensus 82 ~~~L~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~t~ng~~~~~--------~~~~~p~~P~~~~Ef~~Gwf~~W 144 (608)
|+.|++++++.+++ +++++++... .++..+.+++++.+.+ ..+.+|++|+|++|||+|||++|
T Consensus 160 ~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~Gwf~~W 239 (319)
T PF01301_consen 160 MEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGGWFDHW 239 (319)
T ss_dssp HHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS---BT
T ss_pred HHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecccccccc
Confidence 99999999999998 6677776531 1222233344444421 23557899999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCCC-----ccccCCCCCCCCcCCCCCchhhHHHHHHHH
Q 007315 145 GSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGF-----VATSYDYDAPIDEYGLLNEPKWGHLRDLHK 219 (608)
Q Consensus 145 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~-----~~tSYDydAPi~E~G~~~t~ky~~lr~l~~ 219 (608)
|++++.+++++++..++++++.|.+ +||||||||||||+++|+. ++|||||+|||+|+|++ ||||++||+||.
T Consensus 240 G~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr~l~~ 317 (319)
T PF01301_consen 240 GGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYELRRLHQ 317 (319)
T ss_dssp TS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHHHHHHh
Confidence 9999999999999999999999966 7999999999999999983 35999999999999999 699999999986
Q ss_pred H
Q 007315 220 A 220 (608)
Q Consensus 220 ~ 220 (608)
+
T Consensus 318 ~ 318 (319)
T PF01301_consen 318 K 318 (319)
T ss_dssp T
T ss_pred c
Confidence 4
No 4
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.11 E-value=1.1e-10 Score=104.85 Aligned_cols=68 Identities=38% Similarity=0.754 Sum_probs=51.2
Q ss_pred CCCceEEEEEEECCCCCC-CeE-Eec--CCcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceE
Q 007315 497 KQPMTWYKTTFNVPPGND-PLA-LDM--GAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQR 572 (608)
Q Consensus 497 ~~~~~~Yr~~F~~~~~~d-~~~-Ld~--~g~gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PQqt 572 (608)
..+..|||++|+... .| .+. |+. +.+.+++|||||++|||||+. +| ||++
T Consensus 33 ~~g~~~Yrg~F~~~~-~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~---~g----------------------~q~t 86 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTG-QDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG---IG----------------------PQTT 86 (111)
T ss_dssp SSCEEEEEEEEETTT-EEEEEE-EEECSSTTEEEEEEETTEEEEEEETT---TE----------------------CCEE
T ss_pred CCCCEEEEEEEeCCC-cceeEEEEeccCCCceEEEEEECCEEeeeecCC---CC----------------------ccEE
Confidence 457899999996422 22 233 333 468999999999999999965 79 9999
Q ss_pred EeecCcccccCCCcEEEEE
Q 007315 573 WYHVPRSWLKPSGNLLVVF 591 (608)
Q Consensus 573 lY~vP~~~L~~g~N~ivvf 591 (608)
++ ||+++|+.++|.|+|+
T Consensus 87 f~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 87 FS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EE-E-BTTBTTCEEEEEEE
T ss_pred EE-eCceeecCCCEEEEEE
Confidence 88 9999999875555554
No 5
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.04 E-value=5.1e-11 Score=135.11 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=121.0
Q ss_pred cccccCCCCcccccccCCCceecc---------CChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccc
Q 007315 2 FGLCFCFRGFPVWLKYVPGIEFRT---------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 72 (608)
Q Consensus 2 i~aEw~~GGlP~WL~~~p~~~lRt---------~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~ 72 (608)
.|.+|..+++|+||..++.-.+|. ++|-|++++++ |+++|+ ++++++|++|||+|++||||.+
T Consensus 93 ~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v~~w~~dneY~~~-- 164 (673)
T COG1874 93 APPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAVITWQNDNEYGGH-- 164 (673)
T ss_pred CCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCceeEEEccCccCCc--
Confidence 478999999999998776423332 34556666666 666777 6667999999999999999985
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCCcceEeecC-CCC-------CC-ccccccC-----cccc--cccccCCCCC----Cce
Q 007315 73 DIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ-DDA-------PD-PVINTCN-----GFYC--EKFVPNQNYK----PKM 132 (608)
Q Consensus 73 ~~g~~d~~Y~~~L~~~~~~~g~~vp~~~~~~-~~~-------~~-~~~~t~n-----g~~~--~~~~~~~p~~----P~~ 132 (608)
.|+.+|.+.....+.+.+.+ .+-..+. +.. .+ ..+.+.+ +... -++.....++ +..
T Consensus 165 ---~~~~~~~~~~f~~wLk~~yg-~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e~~~~~~~~ 240 (673)
T COG1874 165 ---PCYCDYCQAAFRLWLKKGYG-SLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESEQILEFVRE 240 (673)
T ss_pred ---cccccccHHHHHHHHHhCcc-hHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhhhhHHHHHH
Confidence 35666766666644444443 2221111 100 00 1121222 1000 0122222223 556
Q ss_pred eeeeccccC-CccCCCCCCCC-hHHHHHHHHHHHHhCCceeeeeeeccCCCCC------CCCCC-----------Ccccc
Q 007315 133 WTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG-----------FVATS 193 (608)
Q Consensus 133 ~~Ef~~Gwf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~-----------~~~tS 193 (608)
..|.+-+|| +.|..+.-... .+.-...+++.|..... -||||||+|++|+ |.+++ +..++
T Consensus 241 ~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P~~vn 319 (673)
T COG1874 241 EGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLPSVVN 319 (673)
T ss_pred HHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCcchhh
Confidence 677778888 66665543333 33334456677777766 6999999999999 76665 36799
Q ss_pred CCCCCCCCcCCCC
Q 007315 194 YDYDAPIDEYGLL 206 (608)
Q Consensus 194 YDydAPi~E~G~~ 206 (608)
+++++.+.+.|.+
T Consensus 320 ~~~~n~~~~~G~~ 332 (673)
T COG1874 320 WALYNKLKRPGAL 332 (673)
T ss_pred hhhccCCCCCccc
Confidence 9999999999985
No 6
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.72 E-value=6e-08 Score=87.15 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=58.4
Q ss_pred hhhhccCCCCcceEEEEEEEecCCCcccccCCCCCc-eEec-CcceEEEEEECCEEEEEEEcccCCCceEEeeeec-cCC
Q 007315 339 WEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGTVYGSLENPKLTFSKNVK-LRP 415 (608)
Q Consensus 339 ~Eql~~t~d~~GyvlYrt~~~~~~~~~~~~~~~~~~-L~v~-~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~-l~~ 415 (608)
.+..+..+++.|++||||+|...+.+. ... |.+. +.+.+++|||||+++|..... ...+.+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~-~g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPG-IGPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETT-TECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCC-CCccEEEEeCceeecC
Confidence 455555678999999999997543221 123 4444 578999999999999998732 223356666653 555
Q ss_pred CccEEEEEEecCCC
Q 007315 416 GVNKISLLSTSVGL 429 (608)
Q Consensus 416 g~~~L~ILven~Gr 429 (608)
+.++|.||+++||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67889999999996
No 7
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.22 E-value=7.7e-06 Score=77.99 Aligned_cols=99 Identities=25% Similarity=0.372 Sum_probs=68.1
Q ss_pred CCCcceEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCceEEeeeeccCCCc-cEEEEEE
Q 007315 346 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLS 424 (608)
Q Consensus 346 ~d~~GyvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 424 (608)
....|+.|||++|.++... .+....|.+.++.+.+.|||||+++|...+.. ..+.+.+.-.++.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4588999999999886532 13345688889999999999999999986632 345555544578887 9999999
Q ss_pred ecCCCccccccC-CcccccccccEEEc
Q 007315 425 TSVGLPNVGTHF-EKWNAGVLGPVTLK 450 (608)
Q Consensus 425 en~Gr~N~G~~~-~~~~kGI~g~V~l~ 450 (608)
.+...-.+-... .-...||.++|.|-
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865433220111 12468999998883
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=98.00 E-value=4.8e-05 Score=82.40 Aligned_cols=196 Identities=17% Similarity=0.221 Sum_probs=105.7
Q ss_pred CCCccccccc-CCCcee------------c----cCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCc
Q 007315 8 FRGFPVWLKY-VPGIEF------------R----TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPV 70 (608)
Q Consensus 8 ~GGlP~WL~~-~p~~~l------------R----t~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~ 70 (608)
....|.||.+ .|++.. | .++|.|.+++++++++|++..+ +.-.||++||+||++..
T Consensus 69 ~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~-------~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 69 TAAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYG-------DHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp TTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT-------TTTTEEEEEECCSTTCT
T ss_pred ccccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcc-------ccceEEEEEeccccCcC
Confidence 3568999974 465432 1 2578899999999999977776 23469999999999873
Q ss_pred ccc---------------CC-------------------C----------------------------CcHHHHHHHHHH
Q 007315 71 EWD---------------IG-------------------A----------------------------PGKAYAKWAAQM 88 (608)
Q Consensus 71 ~~~---------------~g-------------------~----------------------------~d~~Y~~~L~~~ 88 (608)
.+. |+ . .-.+|++++++.
T Consensus 142 ~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ 221 (374)
T PF02449_consen 142 RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADI 221 (374)
T ss_dssp S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00 0 124556666666
Q ss_pred HHhcCCCcceEeecCCC---CCC--------ccccccCccccc-----------------cc-ccCCCCCCceeeeeccc
Q 007315 89 AVGLNTGVPWVMCKQDD---APD--------PVINTCNGFYCE-----------------KF-VPNQNYKPKMWTEAWTG 139 (608)
Q Consensus 89 ~~~~g~~vp~~~~~~~~---~~~--------~~~~t~ng~~~~-----------------~~-~~~~p~~P~~~~Ef~~G 139 (608)
+|+...+.|+.++.... ..+ +++. ++ .|.. ++ ....+++|.+++|.++|
T Consensus 222 ir~~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~-~d-~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g 299 (374)
T PF02449_consen 222 IREYDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVS-WD-SYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG 299 (374)
T ss_dssp HHHHSTT-EEE-EE-TT---SS-HHHHGGGSSSEE-EE-E-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S
T ss_pred HHHhCCCceEEeCccccccCcCCHHHHHhhCCcce-ec-cccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC
Confidence 66665555555443221 000 0000 00 0100 00 12247899999999999
Q ss_pred cCCccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCCCccccCCCCCCCCcCC-CCCchhhHHHHHHH
Q 007315 140 WFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLH 218 (608)
Q Consensus 140 wf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDydAPi~E~G-~~~t~ky~~lr~l~ 218 (608)
-..|+.......+..+....-..++.|+..+.|+-+ ....+|.-.. ..+.|+-+| .+ +++|.+++++.
T Consensus 300 -~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~ 368 (374)
T PF02449_consen 300 -PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLG 368 (374)
T ss_dssp ---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHH
T ss_pred -CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHH
Confidence 555766555566777777777889999998887776 3333443221 145677789 77 79999999998
Q ss_pred HHHHh
Q 007315 219 KAIKL 223 (608)
Q Consensus 219 ~~~~~ 223 (608)
..|+.
T Consensus 369 ~~l~~ 373 (374)
T PF02449_consen 369 RELKK 373 (374)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 87764
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.88 E-value=0.0052 Score=70.90 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCcceEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCceEEeeeeccCCCc-cEEEEEEe
Q 007315 347 DASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLST 425 (608)
Q Consensus 347 d~~GyvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILve 425 (608)
+..|..|||++|.++... .+....|.+.++.-.|.|||||++||...+. ...+.|.+.-.|+.|. |+|.|.|+
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~--~~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGG--YTPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCC--ccceEEeCchhccCCCceEEEEEEe
Confidence 367889999999976431 2345678899999999999999999987653 2344554443366675 49999998
Q ss_pred cCCCcc---ccccC-------------C-cccccccccEEEccc
Q 007315 426 SVGLPN---VGTHF-------------E-KWNAGVLGPVTLKGL 452 (608)
Q Consensus 426 n~Gr~N---~G~~~-------------~-~~~kGI~g~V~l~g~ 452 (608)
|.-+.. .|... . -...||.++|.|...
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742110 11100 0 135799999999543
No 10
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.70 E-value=0.003 Score=60.06 Aligned_cols=67 Identities=28% Similarity=0.567 Sum_probs=50.3
Q ss_pred CCCceEEEEEEECCCCC--CCeEEecCCc-ceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceEE
Q 007315 497 KQPMTWYKTTFNVPPGN--DPLALDMGAM-GKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW 573 (608)
Q Consensus 497 ~~~~~~Yr~~F~~~~~~--d~~~Ld~~g~-gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PQqtl 573 (608)
..+..|||.+|++|... ..++|.+.+. ....|||||+.+|+-...+ ....
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--------------------------~~~~- 118 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--------------------------TPFE- 118 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--------------------------S-EE-
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--------------------------CCeE-
Confidence 34679999999998643 3478998874 6999999999999965321 2333
Q ss_pred eecCcccccCCC-cEEEEE
Q 007315 574 YHVPRSWLKPSG-NLLVVF 591 (608)
Q Consensus 574 Y~vP~~~L~~g~-N~ivvf 591 (608)
+.|+. .|++|+ |+|.|.
T Consensus 119 ~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 119 FDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EECGG-GSSSEEEEEEEEE
T ss_pred EeChh-hccCCCCEEEEEE
Confidence 45865 889888 998884
No 11
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.45 E-value=0.011 Score=72.06 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=65.8
Q ss_pred cceEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCceEEeeeeccCCCccEEEEEEecCC
Q 007315 349 SDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVG 428 (608)
Q Consensus 349 ~GyvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~G 428 (608)
.|--|||++|.++..- .+....|.+.++...+.|||||++||...+.. ..+.|.+.--++.|.|+|.|.|.+..
T Consensus 108 n~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~ 181 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWA 181 (1021)
T ss_pred CCeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecC
Confidence 3567999999976532 23456788999999999999999999876532 33444443346778899999997543
Q ss_pred CccccccCCc----ccccccccEEEccc
Q 007315 429 LPNVGTHFEK----WNAGVLGPVTLKGL 452 (608)
Q Consensus 429 r~N~G~~~~~----~~kGI~g~V~l~g~ 452 (608)
. +..++. ...||.++|.|--.
T Consensus 182 d---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 182 D---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred C---CCccccCCccccccccceEEEEEe
Confidence 2 222221 24799999998544
No 12
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.11 E-value=0.022 Score=69.50 Aligned_cols=95 Identities=18% Similarity=0.216 Sum_probs=63.8
Q ss_pred cceEEEEEEEecCCCcccccCCC-CCceEecCcceEEEEEECCEEEEEEEcccCCCceEEeeeeccCCCccEEEEEEecC
Q 007315 349 SDYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 427 (608)
Q Consensus 349 ~GyvlYrt~~~~~~~~~~~~~~~-~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~ 427 (608)
.|-.|||++|.++..-. +. ...|.+.++.-.+.|||||+++|...+. ...+.|.+.-.++.|.|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~w~----~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~--~~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWL----QSGQTRIIFDGVNSAFHLWCNGRWVGYSQDS--RLPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChhhc----CCCeEEEEECeeccEEEEEECCEEEEeecCC--CceEEEEChhhhcCCccEEEEEEEec
Confidence 46789999998764311 11 3568899999999999999999987553 23344544334677889999988432
Q ss_pred CCccccccCCc----ccccccccEEEccc
Q 007315 428 GLPNVGTHFEK----WNAGVLGPVTLKGL 452 (608)
Q Consensus 428 Gr~N~G~~~~~----~~kGI~g~V~l~g~ 452 (608)
- .|..++. ...||..+|.|--.
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEEc
Confidence 1 1222221 24699999998543
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.39 E-value=0.19 Score=61.58 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.8
Q ss_pred CCceEEEEEEECCCCCC--CeEEecCC-cceEEEEECCeeccc
Q 007315 498 QPMTWYKTTFNVPPGND--PLALDMGA-MGKGMVWINGQSIGR 537 (608)
Q Consensus 498 ~~~~~Yr~~F~~~~~~d--~~~Ld~~g-~gKG~v~VNG~nlGR 537 (608)
.+..|||.+|.+|...+ -++|.+.| .....|||||+-+|+
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~ 150 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGF 150 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEecc
Confidence 35689999999986432 37999887 577899999999996
No 14
>PRK10150 beta-D-glucuronidase; Provisional
Probab=92.32 E-value=0.38 Score=55.67 Aligned_cols=41 Identities=29% Similarity=0.635 Sum_probs=33.6
Q ss_pred CCceEEEEEEECCCCC--CCeEEecCC-cceEEEEECCeecccc
Q 007315 498 QPMTWYKTTFNVPPGN--DPLALDMGA-MGKGMVWINGQSIGRH 538 (608)
Q Consensus 498 ~~~~~Yr~~F~~~~~~--d~~~Ld~~g-~gKG~v~VNG~nlGRY 538 (608)
.+..|||.+|.+|... .-++|.+.| .....|||||+.+|+-
T Consensus 64 ~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~ 107 (604)
T PRK10150 64 VGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEH 107 (604)
T ss_pred cccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeE
Confidence 3568999999998642 247999987 4789999999999984
No 15
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=91.78 E-value=0.23 Score=60.81 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=33.0
Q ss_pred CCceEEEEEEECCCC---CCCeEEecCC-cceEEEEECCeeccc
Q 007315 498 QPMTWYKTTFNVPPG---NDPLALDMGA-MGKGMVWINGQSIGR 537 (608)
Q Consensus 498 ~~~~~Yr~~F~~~~~---~d~~~Ld~~g-~gKG~v~VNG~nlGR 537 (608)
.+..|||.+|.+|.. ..-++|.+.| .....|||||+-+|.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~ 162 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGY 162 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEe
Confidence 467999999999964 2147999887 588999999999995
No 16
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=76.03 E-value=2.5 Score=40.77 Aligned_cols=64 Identities=23% Similarity=0.199 Sum_probs=29.6
Q ss_pred CcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceEEeecCcccccCCCcEEEEEEecCC
Q 007315 522 AMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGG 596 (608)
Q Consensus 522 g~gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PQqtlY~vP~~~L~~g~N~ivvfE~~g~ 596 (608)
.-++=+|.||| ..+..+... .| -..|.++++- -+|..+.--|.||+..|++|.|+|.|=-..|.
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~~-~d~~~~r~g~-------~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~gs 154 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--FG-NDNAIYRSGI-------HRGNYRLYEFDIPASLLKAGENTITLTVPSGS 154 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S-
T ss_pred CCCCEEEEEcC-ccCCccccc--cC-CCCceeeCce-------ecccEEEEEEEEcHHHEEeccEEEEEEEccCC
Confidence 44778999999 666665311 22 2344443331 12234555567999999999999987555543
No 17
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=72.62 E-value=11 Score=30.44 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=23.4
Q ss_pred CcceEEEEEECCEEEEEEEcccCC--CceEEee
Q 007315 379 SAGHALQVFINGQLSGTVYGSLEN--PKLTFSK 409 (608)
Q Consensus 379 ~~~d~a~vfvng~~~G~~~~~~~~--~~~~~~~ 409 (608)
...|.|.||++++|+|+++++... .++.|++
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEE
Confidence 357999999999999999987543 3444443
No 18
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=71.89 E-value=3.3 Score=47.61 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=29.0
Q ss_pred CccccCCCCCCCCcCCCCCchhhHHHHHH-HHHHHhh
Q 007315 189 FVATSYDYDAPIDEYGLLNEPKWGHLRDL-HKAIKLC 224 (608)
Q Consensus 189 ~~~tSYDydAPi~E~G~~~t~ky~~lr~l-~~~~~~~ 224 (608)
.++|||||+||+.|+|+++++||.++|.. .+|++.+
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~~C~~Fl~n~ 360 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLREACAAFLSNN 360 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhhHHHHHHhcC
Confidence 38999999999999999889999999942 2344443
No 19
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=71.77 E-value=6.8 Score=33.35 Aligned_cols=49 Identities=20% Similarity=0.362 Sum_probs=33.4
Q ss_pred ceEecCcceEEEEEECCEEEEEEEcccCCCceEEeeeecc-CCCccEEEEEEecCCCc
Q 007315 374 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKL-RPGVNKISLLSTSVGLP 430 (608)
Q Consensus 374 ~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l-~~g~~~L~ILven~Gr~ 430 (608)
.|++.+-....+-||||+++|..... ..+.+ .+ ..|.|+|+| ++..|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~----~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFW----QPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCC---CeEEe----CCCCCeeEEEEE-EcCCCCE
Confidence 45555445689999999999876432 22322 33 678999988 7777764
No 20
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=66.53 E-value=5.7 Score=32.15 Aligned_cols=39 Identities=28% Similarity=0.548 Sum_probs=25.2
Q ss_pred ceEecCcceEEEEEECCEEEEEEEcccCCCceEEeeeeccCCCccEEEE
Q 007315 374 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISL 422 (608)
Q Consensus 374 ~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~I 422 (608)
.|.|...-..|.|||||+++|.. ...+. .+..|.++|.|
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~t-------p~~~~---~l~~G~~~v~v 41 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTT-------PLTLK---DLPPGEHTVTV 41 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccC-------cceee---ecCCccEEEEE
Confidence 46666555678999999999942 12221 25677776655
No 21
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=58.65 E-value=20 Score=36.70 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=50.2
Q ss_pred CcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccc------c-CCCCcHHHH
Q 007315 10 GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW------D-IGAPGKAYA 82 (608)
Q Consensus 10 GlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~------~-~g~~d~~Y~ 82 (608)
..|.|+...+ .+...+++.+|++.++... +|.|.+.+|=||=-.... . +...+.+|+
T Consensus 42 ~~P~W~~~~~-------~~~~~~~~~~~i~~v~~ry---------~g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i 105 (254)
T smart00633 42 QTPDWVFNLS-------KETLLARLENHIKTVVGRY---------KGKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYI 105 (254)
T ss_pred cCCHhhhcCC-------HHHHHHHHHHHHHHHHHHh---------CCcceEEEEeeecccCCCcccccchHHHhcChHHH
Confidence 4677765322 2344566666666665543 356888999999322110 0 111235899
Q ss_pred HHHHHHHHhcCCCcceEeecC
Q 007315 83 KWAAQMAVGLNTGVPWVMCKQ 103 (608)
Q Consensus 83 ~~L~~~~~~~g~~vp~~~~~~ 103 (608)
...-+.||+...++.++.++-
T Consensus 106 ~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 106 EKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHHHHHHHhCCCCEEEEecc
Confidence 999999999998999999874
No 22
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=53.21 E-value=76 Score=28.70 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=40.8
Q ss_pred eEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccC-----CCceEEeeeeccCCC-ccEEEEEE
Q 007315 351 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLE-----NPKLTFSKNVKLRPG-VNKISLLS 424 (608)
Q Consensus 351 yvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 424 (608)
.+.|++.|..+.+..+ ++.+. ..|.+.+||||+.+-...+... .........+.+.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~y-------~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGTY-------TFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEEE-------EEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCceE-------EEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 4678899986544321 23343 5789999999999877654322 001111223344554 78888876
Q ss_pred ecCC
Q 007315 425 TSVG 428 (608)
Q Consensus 425 en~G 428 (608)
.+.+
T Consensus 119 ~~~~ 122 (145)
T PF07691_consen 119 FNRG 122 (145)
T ss_dssp EECS
T ss_pred EECC
Confidence 5544
No 23
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=53.08 E-value=64 Score=31.04 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=30.2
Q ss_pred ceEecCcceEEEEEECCEEEEEEEcc--cC--CC---ceEEeeeeccCCCccEEEEEEecCCC
Q 007315 374 LLTIWSAGHALQVFINGQLSGTVYGS--LE--NP---KLTFSKNVKLRPGVNKISLLSTSVGL 429 (608)
Q Consensus 374 ~L~v~~~~d~a~vfvng~~~G~~~~~--~~--~~---~~~~~~~~~l~~g~~~L~ILven~Gr 429 (608)
.|.|.. ..+..+||||+.||...-. .. .+ -.++.+.--|+.|.|+|.|++-+...
T Consensus 7 ~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 7 RLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 455553 3577899999999864411 01 11 12333322377899999999976443
No 24
>PLN03059 beta-galactosidase; Provisional
Probab=52.27 E-value=60 Score=39.08 Aligned_cols=70 Identities=21% Similarity=0.315 Sum_probs=46.8
Q ss_pred CCCceEEEEEEECCCCC-------CCeEEecCCc-ceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCC
Q 007315 497 KQPMTWYKTTFNVPPGN-------DPLALDMGAM-GKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGK 568 (608)
Q Consensus 497 ~~~~~~Yr~~F~~~~~~-------d~~~Ld~~g~-gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~ 568 (608)
..+-.||+++|+++... .+ .|.+.+. -+.+|||||.-+|.-..+. .+
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~~~--~~---------------------- 522 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYGEL--SN---------------------- 522 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEeec--CC----------------------
Confidence 34679999999986532 13 3655543 5799999999999865431 22
Q ss_pred CceEEeecCcc-cccCCCcEEEEEEec
Q 007315 569 PSQRWYHVPRS-WLKPSGNLLVVFEEW 594 (608)
Q Consensus 569 PQqtlY~vP~~-~L~~g~N~ivvfE~~ 594 (608)
++.+ ++.+ =|+.|.|+|-||-+.
T Consensus 523 ~~~~---~~~~v~l~~g~n~L~iLse~ 546 (840)
T PLN03059 523 PKLT---FSQNVKLTVGINKISLLSVA 546 (840)
T ss_pred cceE---EecccccCCCceEEEEEEEe
Confidence 4433 4543 367899999887554
No 25
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=50.97 E-value=18 Score=34.95 Aligned_cols=54 Identities=26% Similarity=0.562 Sum_probs=30.6
Q ss_pred EEecCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceEE---eecCcccccCCCcEEEEEE
Q 007315 517 ALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW---YHVPRSWLKPSGNLLVVFE 592 (608)
Q Consensus 517 ~Ld~~g~gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PQqtl---Y~vP~~~L~~g~N~ivvfE 592 (608)
.|..++-|+=.+||||+.+|+--.. -| + ..| +...+ |-| .++|++|+|.|.|.=
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~---P~-~------t~y-----------~~~~~Y~tyDV-t~~L~~G~N~iav~l 63 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA---PG-W------TDY-----------DKRVYYQTYDV-TPYLRPGENVIAVWL 63 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE------------------B-----------TTEEEEEEEE--TTT--TTEEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc---cc-c------ccC-----------CCceEEEEEeC-hHHhCCCCCEEEEEE
Confidence 4666777888999999999984311 12 0 011 22222 323 558999999999853
No 26
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=38.09 E-value=43 Score=34.72 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=37.7
Q ss_pred CCCcceEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEc
Q 007315 346 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYG 398 (608)
Q Consensus 346 ~d~~GyvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~~~ 398 (608)
+|.+|-+||+.++.++-... .-.++...|++.++|-+|.|||||.-+=...+
T Consensus 84 rdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred ccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 57889999999998763321 11234567889999999999999987544433
No 27
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=36.32 E-value=28 Score=40.83 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=52.3
Q ss_pred eEEEEEEECCCCCCCeEEecCCcceEEEEECCeeccccccCCCCCCCCCCCCCCCcccccccccCCCCCceEEeecCccc
Q 007315 501 TWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSW 580 (608)
Q Consensus 501 ~~Yr~~F~~~~~~d~~~Ld~~g~gKG~v~VNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~~~PQqtlY~vP~~~ 580 (608)
.+.+.++....+ + .+++++.|.+++-+.++..|||||. .+ ++-..+ |++.|
T Consensus 527 ~~~~~~~~~~~~-~-~~~~~~~~~~~v~~~~~~~l~~~~~----~~----------------------~~~~~~-v~~~~ 577 (673)
T COG1874 527 PNEVNVVVRNGK-D-TTYGLKLWRATVDGEGGTVLARFRE----DG----------------------YAGGPA-VTRRW 577 (673)
T ss_pred hhHhhhheeccC-c-ceeccccceeeeeccCCeEEEEEec----cC----------------------cCCCcc-cchhh
Confidence 344545544322 3 4789999999999999999999996 46 788888 99999
Q ss_pred ccCCCcEEEEEEecC
Q 007315 581 LKPSGNLLVVFEEWG 595 (608)
Q Consensus 581 L~~g~N~ivvfE~~g 595 (608)
+++|.+..++++..+
T Consensus 578 ~~~g~~~~l~~~~~g 592 (673)
T COG1874 578 YGGGKAYYLGFRTSG 592 (673)
T ss_pred hcCcceeEEEeccCc
Confidence 999999999987665
No 28
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=29.50 E-value=41 Score=33.58 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.8
Q ss_pred ceEEEEECCeecccccc
Q 007315 524 GKGMVWINGQSIGRHWP 540 (608)
Q Consensus 524 gKG~v~VNG~nlGRYW~ 540 (608)
.+|.|||||++|.|.=.
T Consensus 55 t~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 55 TRGKILVNGHDLSRLKG 71 (223)
T ss_pred CCceEEECCeecccccc
Confidence 67999999999999643
No 29
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=29.20 E-value=2.2e+02 Score=25.53 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=28.7
Q ss_pred CcceEEEEEECCEEEEEEEcccCCCceEEeeeeccCCCccEEEE-EEecCC
Q 007315 379 SAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISL-LSTSVG 428 (608)
Q Consensus 379 ~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~I-Lven~G 428 (608)
+.+|.+.|++||+.+-+-.....+...+|.. -+.|.+.++| |++.-|
T Consensus 46 ~~Gd~a~vl~dg~~V~~G~~~~~~~~at~~v---~kgG~y~m~V~lCn~dG 93 (106)
T cd02848 46 DPGDTYKVLLDGKEVWSGALTGSSGTATFKV---GKGGRYQMQVALCNGDG 93 (106)
T ss_pred CCCcEEEEEECCeEEEcccCCCCccEEEEEe---CCCCeEEEEEEEECCCC
Confidence 5789999999998774332221222344442 2356777777 666655
No 30
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=27.16 E-value=66 Score=36.93 Aligned_cols=41 Identities=15% Similarity=-0.129 Sum_probs=28.5
Q ss_pred ceEEeccccccCCcccc---CCCCcHHHHHHHHHHHHhcCCCcc
Q 007315 57 PIILSQIENEFGPVEWD---IGAPGKAYAKWAAQMAVGLNTGVP 97 (608)
Q Consensus 57 PII~vQiENEYg~~~~~---~g~~d~~Y~~~L~~~~~~~g~~vp 97 (608)
++-.-|.|+||.-=... ..-.+.++|+.|+++.++.++.++
T Consensus 375 ~~~f~q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~~~~~ 418 (541)
T TIGR01676 375 DCGGHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEKENIPAP 418 (541)
T ss_pred ccccceEEEEEEEecccccccccchHHHHHHHHHHHHhcCCCCC
Confidence 45567899999742100 000369999999999999888774
No 31
>PF09189 DUF1952: Domain of unknown function (DUF1952); InterPro: IPR015272 In Escherichia coli, the MoaD protein plays a central role in the conversion of precursor Z to molybdopterin (MPT) during molybdenum cofactor biosynthesis. MoaD has a fold similar to that of ubiquitin and contains a highly conserved C-terminal Gly-Gly motif, which in its active form contains a transferrable sulphur in the form of a thiocarboxylate group []. This entry represents a domain found in MoaD-related proteins, but with a different structure from the MoaD domain; this domain consists of a TBP-like fold of beta/apha/beta(4)/alpha. These proteins are found in Thermus thermophilus and contain a ubiquitin-like MoaD domain at their N-terminal, and the domain represented by this entry at their C-terminal. One of these proteins is threonine synthase (4.2.3.1 from EC), which catalyses the conversion of O-phospho-L-homoserine to L-threonine and phosphate. ; PDB: 1V8C_B.
Probab=26.11 E-value=13 Score=30.93 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=4.9
Q ss_pred cCCCCcccccc
Q 007315 6 FCFRGFPVWLK 16 (608)
Q Consensus 6 w~~GGlP~WL~ 16 (608)
-++||+|.||+
T Consensus 4 ~~~g~~P~wll 14 (78)
T PF09189_consen 4 HRFGAVPPWLL 14 (78)
T ss_dssp EEEET--HHHH
T ss_pred ccccCCCHHHH
Confidence 34555565554
No 32
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=23.99 E-value=2.5e+02 Score=28.57 Aligned_cols=72 Identities=13% Similarity=-0.057 Sum_probs=38.4
Q ss_pred CCCceeeeeccccCCccCCCCCCCChHHHHHHHHHHHHhCCceeeeeeeccCCCCCCCCCCCccccCCCCCCCCcCCCCC
Q 007315 128 YKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLN 207 (608)
Q Consensus 128 ~~P~~~~Ef~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~tSYDydAPi~E~G~~~ 207 (608)
+.|+++||+=....+ .....++.+...+..+++.. ....+.|+ |++-+..-. .++...+++++|++
T Consensus 182 g~pi~iTE~dv~~~~-----~~~~qA~~~~~~l~~~~~~p-~v~gi~~W------g~~d~~~W~-~~~~~~L~d~~~~~- 247 (254)
T smart00633 182 GLEIQITELDISGYP-----NPQAQAADYEEVFKACLAHP-AVTGVTVW------GVTDKYSWL-DGGAPLLFDANYQP- 247 (254)
T ss_pred CCceEEEEeecCCCC-----cHHHHHHHHHHHHHHHHcCC-CeeEEEEe------CCccCCccc-CCCCceeECCCCCC-
Confidence 789999999544321 11122333444445555554 23456664 544332101 11345689999998
Q ss_pred chhhHH
Q 007315 208 EPKWGH 213 (608)
Q Consensus 208 t~ky~~ 213 (608)
.|-|..
T Consensus 248 kpa~~~ 253 (254)
T smart00633 248 KPAYWA 253 (254)
T ss_pred Chhhhc
Confidence 576654
No 33
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=23.55 E-value=2.1e+02 Score=30.71 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred CcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCC-------ccccCCCCcHHHH
Q 007315 10 GFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP-------VEWDIGAPGKAYA 82 (608)
Q Consensus 10 GlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~-------~~~~~g~~d~~Y~ 82 (608)
-.|.||.... -+-++.++.|++|+..++..-+ . -|+..-|=||==. ..|-.+....+||
T Consensus 108 q~P~W~~~~e-----~~~~~~~~~~e~hI~tV~~rYk--g-------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I 173 (345)
T COG3693 108 QVPDWLFGDE-----LSKEALAKMVEEHIKTVVGRYK--G-------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYI 173 (345)
T ss_pred cCCchhhccc-----cChHHHHHHHHHHHHHHHHhcc--C-------ceeEEEecccccCCCchhhhhhhhccCCccHHH
Confidence 3577776532 2346889999999999988777 3 2677778888322 1111223478999
Q ss_pred HHHHHHHHhcCCCcceEeecCC
Q 007315 83 KWAAQMAVGLNTGVPWVMCKQD 104 (608)
Q Consensus 83 ~~L~~~~~~~g~~vp~~~~~~~ 104 (608)
+..=+.||+.+.+-.|+.||-.
T Consensus 174 ~~aF~~AreadP~AkL~~NDY~ 195 (345)
T COG3693 174 KLAFHIAREADPDAKLVINDYS 195 (345)
T ss_pred HHHHHHHHhhCCCceEEeeccc
Confidence 9999999999988889998873
No 34
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=23.52 E-value=5.5e+02 Score=25.94 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=30.0
Q ss_pred CCCcccccc-cCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEec
Q 007315 8 FRGFPVWLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 62 (608)
Q Consensus 8 ~GGlP~WL~-~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQ 62 (608)
..|..++|. +.|++.-.+ +-.--++++.|-+.+.+ ++ ...++-|+|-+...
T Consensus 63 ~~~~~~ll~fNEPD~~~qs-n~~p~~aa~~w~~~~~~-~~--~~~~~l~sPa~~~~ 114 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPGQS-NMSPEEAAALWKQYMNP-LR--SPGVKLGSPAVAFT 114 (239)
T ss_pred ccCccceeeecCCCCCCCC-CCCHHHHHHHHHHHHhH-hh--cCCcEEECCeeccc
Confidence 346666664 678875533 33445777777655544 44 23446688877554
No 35
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=22.40 E-value=3.4e+02 Score=28.10 Aligned_cols=124 Identities=16% Similarity=0.228 Sum_probs=70.8
Q ss_pred cccccCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHHhccceeccCCceEEeccccccCCccccCCCCcHHH
Q 007315 2 FGLCFCFRGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAY 81 (608)
Q Consensus 2 i~aEw~~GGlP~WL~~~p~~~lRt~dp~yl~~v~~w~~~l~~~l~~~~l~~~~GGPII~vQiENEYg~~~~~~g~~d~~Y 81 (608)
|..|....++=.|-... ....+..||.|.+.+.+-+++++.+.+ .+ =.|||-=+=||-. ..++
T Consensus 75 V~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~--NH-----PSIi~W~~gNE~~---------~~~~ 137 (298)
T PF02836_consen 75 VWQEIPLEGHGSWQDFG-NCNYDADDPEFRENAEQELREMVRRDR--NH-----PSIIMWSLGNESD---------YREF 137 (298)
T ss_dssp EEEE-S-BSCTSSSSTS-CTSCTTTSGGHHHHHHHHHHHHHHHHT--T------TTEEEEEEEESSH---------HHHH
T ss_pred EEEeccccccCccccCC-ccccCCCCHHHHHHHHHHHHHHHHcCc--Cc-----CchheeecCccCc---------cccc
Confidence 34555554443443221 123566789999988888888777777 33 3688888889982 4688
Q ss_pred HHHHHHHHHhcCCCcceEeecCCC--CCCcc-ccccCcccc-----ccc----cc--CCCCCCceeeeeccccCC
Q 007315 82 AKWAAQMAVGLNTGVPWVMCKQDD--APDPV-INTCNGFYC-----EKF----VP--NQNYKPKMWTEAWTGWFT 142 (608)
Q Consensus 82 ~~~L~~~~~~~g~~vp~~~~~~~~--~~~~~-~~t~ng~~~-----~~~----~~--~~p~~P~~~~Ef~~Gwf~ 142 (608)
++.|.+++++...+-|+....... ..+.. .+...+.+. +.+ .. ..+++|++.+||....+.
T Consensus 138 ~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~ 212 (298)
T PF02836_consen 138 LKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYN 212 (298)
T ss_dssp HHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSS
T ss_pred hhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccc
Confidence 999999999988777765544411 11111 111111111 111 11 358899999999655443
No 36
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=22.15 E-value=2.8e+02 Score=24.83 Aligned_cols=38 Identities=11% Similarity=0.186 Sum_probs=25.5
Q ss_pred eEEEEEEEecCCCcccccCCCCCceEecCcceEEEEEECCEEEEEE
Q 007315 351 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTV 396 (608)
Q Consensus 351 yvlYrt~~~~~~~~~~~~~~~~~~L~v~~~~d~a~vfvng~~~G~~ 396 (608)
.+.+++.|..+.+.. -++.+ ...|.+.+||||+.+-..
T Consensus 45 ~~~~~g~i~~~~~G~-------y~f~~-~~~~~~~l~Idg~~vid~ 82 (136)
T smart00758 45 SVRWTGYLKPPEDGE-------YTFSI-TSDDGARLWIDGKLVIDN 82 (136)
T ss_pred EEEEEEEEECCCCcc-------EEEEE-EcCCcEEEEECCcEEEcC
Confidence 367788887654321 23444 356889999999987653
No 37
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=21.00 E-value=5.6e+02 Score=22.32 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=18.7
Q ss_pred ceEecCcceEEEEEECCEEEEEEEccc
Q 007315 374 LLTIWSAGHALQVFINGQLSGTVYGSL 400 (608)
Q Consensus 374 ~L~v~~~~d~a~vfvng~~~G~~~~~~ 400 (608)
..+..+ .|-+.|||||+++-.+-+.+
T Consensus 21 ~F~F~G-DDDvWVFIn~kLv~DlGG~H 46 (90)
T TIGR02148 21 YFEFRG-DDDVWVFINNKLVVDIGGQH 46 (90)
T ss_pred EEEEEc-CCeEEEEECCEEEEEccCcC
Confidence 344444 57889999999987776544
Done!