BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007318
         (608 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VGA|A Chain A, Structures Of Unligated And Inhibitor Complexes Of W168f
           Mutant Of Triosephosphate Isomerase From Plasmodium
           Falciparum
 pdb|1VGA|B Chain B, Structures Of Unligated And Inhibitor Complexes Of W168f
           Mutant Of Triosephosphate Isomerase From Plasmodium
           Falciparum
 pdb|1VGA|C Chain C, Structures Of Unligated And Inhibitor Complexes Of W168f
           Mutant Of Triosephosphate Isomerase From Plasmodium
           Falciparum
 pdb|1VGA|D Chain D, Structures Of Unligated And Inhibitor Complexes Of W168f
           Mutant Of Triosephosphate Isomerase From Plasmodium
           Falciparum
 pdb|1WOA|A Chain A, Structure Of The Loop6 Hinge Mutant Of Plasmodium
           Falciparum Triosephosphate Isomerase, W168f, Complexed
           With Glycerol-2-Phosphate
 pdb|1WOA|B Chain B, Structure Of The Loop6 Hinge Mutant Of Plasmodium
           Falciparum Triosephosphate Isomerase, W168f, Complexed
           With Glycerol-2-Phosphate
 pdb|1WOA|C Chain C, Structure Of The Loop6 Hinge Mutant Of Plasmodium
           Falciparum Triosephosphate Isomerase, W168f, Complexed
           With Glycerol-2-Phosphate
 pdb|1WOA|D Chain D, Structure Of The Loop6 Hinge Mutant Of Plasmodium
           Falciparum Triosephosphate Isomerase, W168f, Complexed
           With Glycerol-2-Phosphate
 pdb|1WOB|A Chain A, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
           Triosephosphate Isomerase, W168f, Complexed To Sulfate
 pdb|1WOB|B Chain B, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
           Triosephosphate Isomerase, W168f, Complexed To Sulfate
 pdb|1WOB|C Chain C, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
           Triosephosphate Isomerase, W168f, Complexed To Sulfate
 pdb|1WOB|D Chain D, Structure Of A Loop6 Hinge Mutant Of Plasmodium Falciparum
           Triosephosphate Isomerase, W168f, Complexed To Sulfate
          Length = 248

 Score = 29.3 bits (64), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 7/108 (6%)

Query: 148 DIADDIKREYGIQLNYSQA---WRAKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSVV 204
           +IA D+  EY I  ++ +        E  RE+LQ S K++   +  F E +++      +
Sbjct: 81  EIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTI 140

Query: 205 TFTTKEDSSFHRLFVSFHASISGFQQGCRPLLFLDTTPLNSKYQGTLL 252
              TK+  +F  L  +F   I  ++    PL  + T    +  Q  L+
Sbjct: 141 EVITKQVKAFVDLIDNFDNVILVYE----PLFAIGTGKTATPEQAQLV 184


>pdb|2VFD|A Chain A, Crystal Structure Of The F96s Mutant Of Plasmodium
           Falciparum Triosephosphate Isomerase
 pdb|2VFD|B Chain B, Crystal Structure Of The F96s Mutant Of Plasmodium
           Falciparum Triosephosphate Isomerase
 pdb|2VFE|A Chain A, Crystal Structure Of F96s Mutant Of Plasmodium Falciparum
           Triosephosphate Isomerase With 3-Phosphoglycerate Bound
           At The Dimer Interface
 pdb|2VFE|B Chain B, Crystal Structure Of F96s Mutant Of Plasmodium Falciparum
           Triosephosphate Isomerase With 3-Phosphoglycerate Bound
           At The Dimer Interface
          Length = 248

 Score = 28.9 bits (63), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 148 DIADDIKREYGIQLNYSQAWR----AKEIAREQLQGSYKDSYTLLPFFCEKIKETNPGSV 203
           +IA D+  EY I + +S+  +      E  RE+LQ S K++   +  F E +++      
Sbjct: 81  EIAKDLNIEYVI-IGHSERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKT 139

Query: 204 VTFTTKEDSSFHRLFVSFHASI 225
           +   TK+  +F  L  +F   I
Sbjct: 140 IEVITKQVKAFVDLIDNFDNVI 161


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,025,864
Number of Sequences: 62578
Number of extensions: 731500
Number of successful extensions: 1766
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 9
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)