BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007320
(608 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana
GN=At1g04910 PE=1 SV=1
Length = 519
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 237/477 (49%), Gaps = 68/477 (14%)
Query: 139 TEKEFKPKKSDFWKEPYKQASSWKPCLTEDLQIQIGKHDESNGYIMVSANGGLNQQRVAI 198
E+ ++ KS W+ S W P E+NGY+ V NGGLNQQR AI
Sbjct: 59 VEELWESAKSGGWRPSSAPRSDWPP-----------PTKETNGYLRVRCNGGLNQQRSAI 107
Query: 199 CNAVAVASLLNATLVLPRFLYSNVWKDPSQFGDIYQEEYFISVLKHEVNIVKELPSPLKS 258
CNAV A ++NATLVLP ++ W D S F IY E+FI LK++V IV ++P K+
Sbjct: 108 CNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKN 167
Query: 259 IDIEAIGSLITDADIAKEAKPID-YVRKVLPILVRNGVVHFLGYGNRLGFDPLPSKLQRL 317
+ I + ++A PI+ Y+ L + + ++ + +RL + + QRL
Sbjct: 168 GKTKKIKAFQIRP--PRDA-PIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRL 224
Query: 318 RCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDKQLLGNYMPNIPSKHHEVARGSY 377
RC+ N+HAL+F P I + + +V ++R S+ H
Sbjct: 225 RCRVNYHALRFKPHIMKLSESIVDKLR----------------------SQGH------- 255
Query: 378 RYLALHLRFEEDMVAYSQCDFGGGESERKELQAYREIHFPLLIERLKSSKPISPEELRKL 437
++++HLRFE DM+A++ C E+K L+ YR+ +F + K + E R +
Sbjct: 256 -FMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENF--------ADKRLIYNERRAI 306
Query: 438 GRCPLTPEEAALLLSALGFKHGTYIYLAGSQIYGANSRMQAFTSLYPNLVTKETLLTPSE 497
G+CPLTPEE L+L A+ F + T IYLA +++G M+ F +L+P L + + PSE
Sbjct: 307 GKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL-DNHSSVDPSE 365
Query: 498 LEPFRNFSSQLAALDFIACATADVFAMT-DSGSQLSSLVSGFRTYYGNGQAPTLRPNKKR 556
+ +A+D++ C +D+F T D S ++ + G R YYG T+RP++K
Sbjct: 366 ELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT--TIRPDRKA 423
Query: 557 LAAILSENSTIRWNDFEDRVRKMIEEG------QRVRVRGFGRSIYRQPRSPECMCR 607
LA I + FE+ VR+++ + +RV F + + PEC C+
Sbjct: 424 LAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSW-----PECFCQ 475
>sp|Q1IHJ4|DNLJ_KORVE DNA ligase OS=Koribacter versatilis (strain Ellin345) GN=ligA PE=3
SV=1
Length = 673
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 79 FFFLLD--------SLMVSIFDSINLQHSSTSKNSKGLKDDRKVAHT---NKEKLPVKMY 127
+F L+D S + + + + +S K + D K H ++EKLP ++
Sbjct: 232 YFLLVDGRVHIDRQSEALDTLEKLGFKVNSNRAVFKSIDDVLKFIHKKEEDREKLPYEID 291
Query: 128 GRLLSLASSALTEKEFKPKKSDFWKEPYKQASSWKPCLTEDLQIQIGK 175
G ++ + S+AL ++ K+ W YK A+ ED+ +Q+G+
Sbjct: 292 GVVIKVNSTALWQRLGFTGKAPRWAIAYKYAARAAVTQVEDILVQVGR 339
>sp|A1WUI6|IHFB_HALHL Integration host factor subunit beta OS=Halorhodospira halophila
(strain DSM 244 / SL1) GN=ihfB PE=3 SV=1
Length = 102
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 557 LAAILSENSTIRWNDFEDRVRKMIEE-------GQRVRVRGFGR-SIYRQP 599
+ AI S+ + D ED V+KM+E G+R+ +RGFG S++ +P
Sbjct: 7 IEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRP 57
>sp|Q23023|UNC51_CAEEL Serine/threonine-protein kinase unc-51 OS=Caenorhabditis elegans
GN=unc-51 PE=1 SV=1
Length = 856
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 402 ESERKELQAYREIHFPL----LIERLKSSKPISPEELRKLGRCP------LTPEEAALLL 451
ES R L A R I P + +R S+K SP +R++G P +TP + +
Sbjct: 289 ESARSPLLANRRIITPQSSLPVPKRAGSTKLDSPTPVRRIGESPRVQRRVITPGMPSPVP 348
Query: 452 SALGFKHGTYIYLAGSQIYGANSRMQAFTSLYPNLVTKETLLTPSELEPFRNFSSQLAAL 511
A + + +L Q ++Q T++ P+L T + + PS+ ++ +LAA
Sbjct: 349 GAPMQESTDFTFLPPRQESSPVKQVQVHTNVSPSLTTCKPVPVPSQRLTYQKMEERLAA- 407
Query: 512 DFIACATADVFAMTDSGSQLSS 533
A TA + + +GS +S+
Sbjct: 408 ---ARKTAVPSSSSPTGSAVSA 426
>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp.
japonica GN=HSFA1 PE=2 SV=1
Length = 506
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 326 LKFVPKIQEAASLLVRRIRKHDSA---RSM--LDKQLLGNYMPN 364
+K+ P I EAA ++R+I K DS+ SM D LL NYMPN
Sbjct: 262 VKYQPMINEAAKAMLRKILKLDSSHRFESMGNSDNFLLENYMPN 305
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,708,697
Number of Sequences: 539616
Number of extensions: 9309025
Number of successful extensions: 22462
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22453
Number of HSP's gapped (non-prelim): 7
length of query: 608
length of database: 191,569,459
effective HSP length: 123
effective length of query: 485
effective length of database: 125,196,691
effective search space: 60720395135
effective search space used: 60720395135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)