Query 007320
Match_columns 608
No_of_seqs 195 out of 394
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.5 2E-13 7E-18 143.6 16.4 303 176-545 18-382 (408)
2 3zy2_A Putative GDP-fucose pro 99.1 4.4E-10 1.5E-14 117.7 11.2 281 178-548 6-353 (362)
3 2hhc_A NODZ, nodulation fucosy 96.5 0.079 2.7E-06 53.7 16.8 52 179-233 3-54 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 95.7 0.34 1.2E-05 53.4 18.1 81 455-540 335-418 (526)
5 1l2m_A REP protein; A+B fold, 22.0 85 0.0029 28.3 4.3 28 439-467 17-44 (118)
6 2k9j_B Integrin beta-3; transm 19.5 98 0.0033 23.1 3.5 26 69-94 15-40 (43)
7 2knc_B Integrin beta-3; transm 18.6 96 0.0033 25.9 3.6 26 67-92 14-39 (79)
8 3s8f_C Cytochrome C oxidase po 18.4 1.4E+02 0.0046 21.7 3.8 27 66-92 4-30 (34)
9 1p3q_Q VPS9P, vacuolar protein 18.0 42 0.0015 26.5 1.2 14 474-487 14-27 (54)
10 3l32_A Phosphoprotein; antipar 17.8 55 0.0019 25.1 1.7 21 325-345 2-22 (45)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.50 E-value=2e-13 Score=143.64 Aligned_cols=303 Identities=18% Similarity=0.162 Sum_probs=165.0
Q ss_pred CCCCCcEEEEEec-C-chhhHHHHHHHHHHHHHHhcCe----EeecccccCcccCCC------CCCCcccchHHHHHhcc
Q 007320 176 HDESNGYIMVSAN-G-GLNQQRVAICNAVAVASLLNAT----LVLPRFLYSNVWKDP------SQFGDIYQEEYFISVLK 243 (608)
Q Consensus 176 ~~~snGYl~V~~n-G-GLNQqR~~IcDaVaVAriLNAT----LViP~l~~~s~WkD~------S~F~DIFD~dhFI~~Lk 243 (608)
+...++||+-..| | |.|.||...-.|.++|+.||.| ||||-+..-.-|+-. -.|++.||++.+-
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 3467999999875 4 8999999999999999999999 999976433335433 2699999998743
Q ss_pred cccEEe------ccC-Cc-------------ccc---cchhhhhcc-----cccccccCCccChhhhH------------
Q 007320 244 HEVNIV------KEL-PS-------------PLK---SIDIEAIGS-----LITDADIAKEAKPIDYV------------ 283 (608)
Q Consensus 244 ~dVrIV------k~L-P~-------------~~~---~~~~~~~~~-----~i~~~~i~~~ss~~~Y~------------ 283 (608)
..|.|+ +++ |. ... +.+...... ............|.|=.
T Consensus 94 ~~vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 94 KNIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS 173 (408)
T ss_dssp TTSCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred hhCCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence 333443 111 10 000 000000000 00000000000111111
Q ss_pred -----hhhhhhhhhcc---eEEEeccCCCCCCCCCChhhhhhhccccccccccchHHHHHHHHHHHHHHhcccccchhhh
Q 007320 284 -----RKVLPILVRNG---VVHFLGYGNRLGFDPLPSKLQRLRCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDK 355 (608)
Q Consensus 284 -----~~VlP~L~k~~---VI~l~~f~~RLa~d~lP~~iQrLRCrvnF~ALrF~p~I~~lG~~LV~RLR~~~~~~~~~~~ 355 (608)
..+-|.+.+.. -+-+..+...|+.-.-..+...+| ..|+|.+.|.+.|+..++..-..... ..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~----~~ 244 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDD----AD 244 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTT----TT
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccc----ee
Confidence 12234443321 222333434444111112333322 37999999999999988865432100 00
Q ss_pred hhhcCCCCCCCCCc--cccccCCcceEEEeeccchhhhhhcccCCCCChhHHHHHHHHHHhhhhhHHHhhcCCCCCChHH
Q 007320 356 QLLGNYMPNIPSKH--HEVARGSYRYLALHLRFEEDMVAYSQCDFGGGESERKELQAYREIHFPLLIERLKSSKPISPEE 433 (608)
Q Consensus 356 ~~~~~~~~~~~~~~--~~~~~~~g~yvALHLRfE~DMlAfSgC~~ggg~~E~~eL~~~R~~~~~~~~~r~~~~k~i~~~~ 433 (608)
.+.. ...|... ......+++|+++|+|-+.=+.++..|.-. .....+
T Consensus 245 h~r~---~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----~~~~~~------------------------ 293 (408)
T 4ap5_A 245 RIPF---QEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVR------------------------ 293 (408)
T ss_dssp TCCC---CSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----HHHHHH------------------------
T ss_pred eccc---chhHhhhhcccccccCCCccccccccccchhhhhccCCC----HHHHHH------------------------
Confidence 0000 0011100 011223579999999987433444444311 111111
Q ss_pred HhcCCCCcCCHHHHHHHHHHcCCCCccEEEEEeccccCcchhhHHHHHhCCCccccccCCCccccccccccccccchhhe
Q 007320 434 LRKLGRCPLTPEEAALLLSALGFKHGTYIYLAGSQIYGANSRMQAFTSLYPNLVTKETLLTPSELEPFRNFSSQLAALDF 513 (608)
Q Consensus 434 ~R~~G~CPLTPeEvgl~LraLGf~~~T~IYLA~geiYGG~~~l~pL~~~FPnl~tKesLas~eEL~pf~~~ss~lAALDY 513 (608)
.+.-+++.. +-+.||||+-+. +..+..|++.+|.++.-.. ..+++.++ ....+|.||-
T Consensus 294 ------------~i~~~~~~~---~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq 351 (408)
T 4ap5_A 294 ------------KIRSLMKTH---RLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQ 351 (408)
T ss_dssp ------------HHHHHHHHH---TCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHH
T ss_pred ------------HHHHHHHhc---CCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHH
Confidence 111222222 223499998753 4457889999998764322 23444444 2445789999
Q ss_pred eeeecCceeeecCCCCchhhhhhhcccccCCC
Q 007320 514 IACATADVFAMTDSGSQLSSLVSGFRTYYGNG 545 (608)
Q Consensus 514 iVcl~SDVFv~t~~G~n~a~lV~GhR~y~g~g 545 (608)
+||.+||+||+|. .|.|+..|.=.|-+.|..
T Consensus 352 ~Ic~~a~~FiGt~-~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 352 WICAHARFFIGTS-VSTFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHTEEEEEBCT-TCHHHHHHHHHHHHHTBC
T ss_pred HHHHhCCeeEeCC-cCchhHHHHHHHHhcCCC
Confidence 9999999999987 668999999999999843
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=99.07 E-value=4.4e-10 Score=117.73 Aligned_cols=281 Identities=20% Similarity=0.219 Sum_probs=159.3
Q ss_pred CCCcEEEEE-ecCchhhHHHHHHHHHHHHHHhcCeEeecccccCcccCCCC---CCCcccchHH------------HHHh
Q 007320 178 ESNGYIMVS-ANGGLNQQRVAICNAVAVASLLNATLVLPRFLYSNVWKDPS---QFGDIYQEEY------------FISV 241 (608)
Q Consensus 178 ~snGYl~V~-~nGGLNQqR~~IcDaVaVAriLNATLViP~l~~~s~WkD~S---~F~DIFD~dh------------FI~~ 241 (608)
.+||||+-= |-|-..+|-...--+.+.||.||-|||||-+-.-.. -.+ .|++-|+++. |++.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~ 83 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PETKMIPFEFLFQVGTVAKYTRVVTMQEFTKK 83 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SSCEEECHHHHBCHHHHTTTSCEECHHHHHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--CcccccchhheeecchhhhhceeeeHHHHHHH
Confidence 479999875 999999999999999999999999999998753222 113 4777777764 4444
Q ss_pred cccccEEeccCCcccc----cc-------------hhhhhccccc----cccc--C-C--ccC----hhhhHhhhhhhh-
Q 007320 242 LKHEVNIVKELPSPLK----SI-------------DIEAIGSLIT----DADI--A-K--EAK----PIDYVRKVLPIL- 290 (608)
Q Consensus 242 Lk~dVrIVk~LP~~~~----~~-------------~~~~~~~~i~----~~~i--~-~--~ss----~~~Y~~~VlP~L- 290 (608)
|...| =|++-. .. ....-|+..- .+.| . + ... -+|-.......+
T Consensus 84 lap~~-----WP~~~R~~~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~~~~~~~W~ 158 (362)
T 3zy2_A 84 IMPTV-----WPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQMGSRKKWL 158 (362)
T ss_dssp THHHH-----SCGGGCEEEESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC-------CHH
T ss_pred hcccc-----CCcccceEeeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccchhHHHHHH
Confidence 43211 111100 00 0000000000 0000 0 0 000 000000011111
Q ss_pred -----hhcceEEEeccCCCCCCCCCC--hhhhhhhccccccccccchHHHHHHHHHHHHHHhcccccchhhhhhhcCCCC
Q 007320 291 -----VRNGVVHFLGYGNRLGFDPLP--SKLQRLRCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDKQLLGNYMP 363 (608)
Q Consensus 291 -----~k~~VI~l~~f~~RLa~d~lP--~~iQrLRCrvnF~ALrF~p~I~~lG~~LV~RLR~~~~~~~~~~~~~~~~~~~ 363 (608)
.+|=|+.|.+-- -+|...+ -.||| -|+++++|.+.|++.++.--.
T Consensus 159 ~~~p~~~~pVlAf~gaP--a~FPv~~e~r~Lqk--------Ym~WS~~i~~~a~~fI~~~L~------------------ 210 (362)
T 3zy2_A 159 EKFPSEEYPVLAFSSAP--APFPSKGKVWSIQK--------YLRWSSRITEQAKKFISANLA------------------ 210 (362)
T ss_dssp HHSCTTTCSEEEESSCS--SCSSCCGGGGGGGG--------GCCBCHHHHHHHHHHHHHHCC------------------
T ss_pred HhCCcccCceEeecCCC--CCCCcChhhHhHHH--------hccccHHHHHHHHHHHHHhcC------------------
Confidence 246777776521 1233222 24444 589999999999998876332
Q ss_pred CCCCCccccccCCcceEEEeeccchhhhhhcccCCC-CChhHHHHHHHHHHhhhhhHHHhhcCCCCCChHH---HhcCC-
Q 007320 364 NIPSKHHEVARGSYRYLALHLRFEEDMVAYSQCDFG-GGESERKELQAYREIHFPLLIERLKSSKPISPEE---LRKLG- 438 (608)
Q Consensus 364 ~~~~~~~~~~~~~g~yvALHLRfE~DMlAfSgC~~g-gg~~E~~eL~~~R~~~~~~~~~r~~~~k~i~~~~---~R~~G- 438 (608)
++|||||||-=.|+.-. |.+- .+. . |.+ --+|.- ....|
T Consensus 211 -------------rpyVgIHLR~G~DW~~a--C~hlk~~~--------~-----~~l--------faSPQC~Gy~~~~~~ 254 (362)
T 3zy2_A 211 -------------KPFVAVHLRNDADWVRV--CEHIDTTT--------N-----RPL--------FASEQCLGEGHHLGT 254 (362)
T ss_dssp -------------SSEEEEEECCCHHHHHH--HHTCCTTT--------C-----CCC--------TTTHHHHCGGGTTCC
T ss_pred -------------CCeEEEEEecCCcHHHH--Hhhhcccc--------C-----ccc--------ccCCcccCCcccCcc
Confidence 38999999999999866 8752 110 0 000 001100 00111
Q ss_pred ----CCcCCHHH----HHHHHHHcCCCCccEEEEEeccccCcchhhHHHHHhCCCccccccCCCccccccccccccccch
Q 007320 439 ----RCPLTPEE----AALLLSALGFKHGTYIYLAGSQIYGANSRMQAFTSLYPNLVTKETLLTPSELEPFRNFSSQLAA 510 (608)
Q Consensus 439 ----~CPLTPeE----vgl~LraLGf~~~T~IYLA~geiYGG~~~l~pL~~~FPnl~tKesLas~eEL~pf~~~ss~lAA 510 (608)
.|==+.++ +..+++.++-+ .||||+-.. ..+.-|+++|+....+ +.+ +.| ..|+
T Consensus 255 lt~emClPSle~I~rqIk~~vk~~~lk---sVFIATDa~----~~~~ELk~~L~~~~v~--vv~---~~p------e~a~ 316 (362)
T 3zy2_A 255 LTKEICSPSKQQILEQIVEKVGSIGAK---SVFVASDKD----HMIDEINEALKPYEIE--AHR---QEP------DDMY 316 (362)
T ss_dssp CCHHHHSCCHHHHHHHHHHHHHHHTCS---EEEEEESSC----CCHHHHHHHHGGGTCC--EEC---CSS------CCHH
T ss_pred cchhccCCCHHHHHHHHHHHHHhcCCc---EEEEecCCH----HHHHHHHHHhhccCce--EEE---eCC------chhH
Confidence 24223434 34456666644 599999754 3578888888753111 111 001 1799
Q ss_pred hheeeeecCceeeecCCCCchhhhhhhcccccCCCCCc
Q 007320 511 LDFIACATADVFAMTDSGSQLSSLVSGFRTYYGNGQAP 548 (608)
Q Consensus 511 LDYiVcl~SDVFv~t~~G~n~a~lV~GhR~y~g~g~~k 548 (608)
||.+||.+||+||+|. .|.|+..|.=.|--.|.-+++
T Consensus 317 ID~~I~~~A~~FIGN~-~SSFSa~I~rERdi~G~~~~p 353 (362)
T 3zy2_A 317 TSLAIMGRADLFVGNC-VSTFSHIVKRERDHAGQSPRP 353 (362)
T ss_dssp HHHHHHHHSSEEEECT-TCHHHHHHHHHHHHSSSSCCC
T ss_pred HHHHHHHhCCEeecCc-cccccHHHHHHHHhcCCCCCC
Confidence 9999999999999987 668999999999888743333
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=96.51 E-value=0.079 Score=53.65 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCcEEEEEecCchhhHHHHHHHHHHHHHHhcCeEeecccccCcccCCCCCCCccc
Q 007320 179 SNGYIMVSANGGLNQQRVAICNAVAVASLLNATLVLPRFLYSNVWKDPSQFGDIY 233 (608)
Q Consensus 179 snGYl~V~~nGGLNQqR~~IcDaVaVAriLNATLViP~l~~~s~WkD~S~F~DIF 233 (608)
+..||++...|||.+|=-+++.|.++|...|.+|+|--.. ..|-. ..|.+.|
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~-~~y~~--~~~~~~f 54 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG-SCYVE--QPFSNAF 54 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT-CTTCS--STTSBSH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC-cccCC--CCccccC
Confidence 4579999999999999999999999999999999886554 22322 3466666
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=95.72 E-value=0.34 Score=53.36 Aligned_cols=81 Identities=20% Similarity=0.211 Sum_probs=51.9
Q ss_pred CCCCccEEEEEeccccCcchhhHHHHHhCCCc--cccccCCCcccc-ccccccccccchhheeeeecCceeeecCCCCch
Q 007320 455 GFKHGTYIYLAGSQIYGANSRMQAFTSLYPNL--VTKETLLTPSEL-EPFRNFSSQLAALDFIACATADVFAMTDSGSQL 531 (608)
Q Consensus 455 Gf~~~T~IYLA~geiYGG~~~l~pL~~~FPnl--~tKesLas~eEL-~pf~~~ss~lAALDYiVcl~SDVFv~t~~G~n~ 531 (608)
..+..+.||||+.+. ..++-+++.||+. ++.........+ ..+...+-.-+.+|.++.+++|+||.|. .||+
T Consensus 335 ~~~~~~~ifLATDDp----~v~~e~k~~~p~~~~~~d~~~~~~a~~~~R~s~~~l~~~l~DL~lLs~cd~~Vgt~-sS~~ 409 (526)
T 2de0_X 335 MQVDKKRVYLATDDP----SLLKEAKTKYPNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTF-SSQV 409 (526)
T ss_dssp SCCSSCEEEEEESCH----HHHHHHHHHCTTSEEECCCCSSCSSGGGGGTCCTHHHHHHHHHHHHHHSSEEEECT-TSHH
T ss_pred cCCCCCeEEEEcCCH----HHHHHHHHhCCCCEEecCcccccccCccccccHHHHHHHHHHHHHHhcCCeeecCC-CCHH
Confidence 467789999999875 5677788889985 332222111111 1111011135789999999999999986 4578
Q ss_pred hhhhhhccc
Q 007320 532 SSLVSGFRT 540 (608)
Q Consensus 532 a~lV~GhR~ 540 (608)
+.++...+.
T Consensus 410 srla~~l~~ 418 (526)
T 2de0_X 410 CRVAYEIMQ 418 (526)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 888765543
No 5
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=22.00 E-value=85 Score=28.30 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCcCCHHHHHHHHHHcCCCCccEEEEEec
Q 007320 439 RCPLTPEEAALLLSALGFKHGTYIYLAGS 467 (608)
Q Consensus 439 ~CPLTPeEvgl~LraLGf~~~T~IYLA~g 467 (608)
.||||+||+...|+.|--+.+ ..|+...
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~i~ 44 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeeeeh
Confidence 699999999999999885553 5565544
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=19.52 E-value=98 Score=23.15 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Q 007320 69 SIAYIFVLVGFFFLLDSLMVSIFDSI 94 (608)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~m~~~~~~~ 94 (608)
.+++-+.++|++.|+.|..+-.+|+.
T Consensus 15 gvi~~ivliGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLLITIHDR 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHheehh
Confidence 34455677899999999998888753
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.63 E-value=96 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007320 67 VRSIAYIFVLVGFFFLLDSLMVSIFD 92 (608)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~m~~~~~ 92 (608)
+..+++-+.++|++.|+.|..+..++
T Consensus 14 v~gvi~gilliGllllliwk~~~~i~ 39 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKLLITIH 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455557788999999998888877
No 8
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=18.42 E-value=1.4e+02 Score=21.70 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhc
Q 007320 66 NVRSIAYIFVLVGFFFLLDSLMVSIFD 92 (608)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~m~~~~~ 92 (608)
.++.-++.+.++|++.++.|+.+..+.
T Consensus 4 ~l~GTl~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 4 KPKGALAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceehHHHHHHHHHHHHHHHHHeee
Confidence 455667788888999999998876553
No 9
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=17.95 E-value=42 Score=26.53 Aligned_cols=14 Identities=7% Similarity=0.593 Sum_probs=11.4
Q ss_pred hhhHHHHHhCCCcc
Q 007320 474 SRMQAFTSLYPNLV 487 (608)
Q Consensus 474 ~~l~pL~~~FPnl~ 487 (608)
..+..|++|||++-
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 45788999999973
No 10
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=17.80 E-value=55 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.6
Q ss_pred ccccchHHHHHHHHHHHHHHh
Q 007320 325 ALKFVPKIQEAASLLVRRIRK 345 (608)
Q Consensus 325 ALrF~p~I~~lG~~LV~RLR~ 345 (608)
|+-|+.-+.++|.++|+||+.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt 22 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHHHc
Confidence 456888899999999999997
Done!