Query 007320
Match_columns 608
No_of_seqs 195 out of 394
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 22:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007320.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007320hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ihoa2 d.3.1.18 (A:156-293) A 49.5 1.2 8.7E-05 38.6 -0.9 35 211-245 31-70 (138)
2 d1l5ia_ d.89.1.4 (A:) DNA-bind 28.1 26 0.0019 29.6 4.2 28 439-467 17-44 (118)
3 d1oqya2 a.5.2.1 (A:317-360) DN 17.6 8.7 0.00063 27.6 -0.9 26 443-468 1-30 (44)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 16.2 26 0.0019 26.3 1.5 49 472-525 9-57 (59)
5 d1mn3a_ a.5.2.4 (A:) Vacuolar 15.6 25 0.0018 26.0 1.2 15 473-487 13-27 (54)
6 d1vjna_ d.157.1.4 (A:) Hypothe 15.3 95 0.0069 27.0 5.5 55 182-244 130-184 (209)
7 d1okga1 c.46.1.2 (A:7-162) 3-m 12.2 73 0.0053 27.2 3.6 30 436-465 65-95 (156)
8 d2g7ja1 d.198.5.1 (A:1-112) Pu 11.6 48 0.0035 27.3 1.9 19 441-459 2-20 (112)
9 d1sfsa_ c.1.8.8 (A:) Unnamed h 11.3 50 0.0037 30.2 2.3 20 449-468 83-102 (213)
10 d1jjcb2 a.6.1.1 (B:400-474) Do 11.1 64 0.0047 24.3 2.5 23 435-458 14-36 (75)
No 1
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=49.55 E-value=1.2 Score=38.60 Aligned_cols=35 Identities=31% Similarity=0.575 Sum_probs=29.7
Q ss_pred eEeecccccCcccCCC-----CCCCcccchHHHHHhcccc
Q 007320 211 TLVLPRFLYSNVWKDP-----SQFGDIYQEEYFISVLKHE 245 (608)
Q Consensus 211 TLViP~l~~~s~WkD~-----S~F~DIFD~dhFI~~Lk~d 245 (608)
-||+|....+++|+++ -.=+.|||-|.|--..|.-
T Consensus 31 YLVLp~~~~s~IWk~SGL~~t~~R~~I~D~DdFA~~~KaA 70 (138)
T d2ihoa2 31 YLVLPNATFTQIWKDSGLPGSKWREQIYDCDDFAIAMKAA 70 (138)
T ss_dssp EECCCHHHHHHHHHTTTCTTCCCBTTTBCHHHHHHHHHHH
T ss_pred EEEechHHHHHHHhccCCCCCcccccccccHHHHHHHHHH
Confidence 3999999999999997 2456899999998887765
No 2
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=28.09 E-value=26 Score=29.63 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCcCCHHHHHHHHHHcCCCCccEEEEEec
Q 007320 439 RCPLTPEEAALLLSALGFKHGTYIYLAGS 467 (608)
Q Consensus 439 ~CPLTPeEvgl~LraLGf~~~T~IYLA~g 467 (608)
+|||||||+.-.|..|==+.+. .||..+
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~-~~i~v~ 44 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNK-LFIKIC 44 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCE-EEEEEE
T ss_pred CCCCCHHHHHHHHHHhcCCcce-eEEEEc
Confidence 6999999999999998765544 566544
No 3
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.58 E-value=8.7 Score=27.60 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=18.1
Q ss_pred CHHHHH--HHHHHcCCCCccE--EEEEecc
Q 007320 443 TPEEAA--LLLSALGFKHGTY--IYLAGSQ 468 (608)
Q Consensus 443 TPeEvg--l~LraLGf~~~T~--IYLA~ge 468 (608)
||+|.. -=|.+|||+++.. +|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 566644 4589999999864 5766553
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.24 E-value=26 Score=26.28 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=29.1
Q ss_pred cchhhHHHHHhCCCccccccCCCccccccccccccccchhheeeeecCceeeec
Q 007320 472 ANSRMQAFTSLYPNLVTKETLLTPSELEPFRNFSSQLAALDFIACATADVFAMT 525 (608)
Q Consensus 472 G~~~l~pL~~~FPnl~tKesLas~eEL~pf~~~ss~lAALDYiVcl~SDVFv~t 525 (608)
-+..+..|++|||++... .|- .=|. .+..+..+|+|=..-+.-+.|-|+
T Consensus 9 ~Ee~i~~LkeMFP~~D~~-vI~--~VL~--a~~G~vd~aid~LL~Msd~~~gp~ 57 (59)
T d1wgla_ 9 SEEDLKAIQDMFPNMDQE-VIR--SVLE--AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp CHHHHHHHHHHCSSSCHH-HHH--HHHT--TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cHHHHHHHHHHCCCCCHH-HHH--HHHH--HcCCCHHHHHHHHHhcCCCCcCCC
Confidence 356799999999998532 211 1111 223455677777666666666543
No 5
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.56 E-value=25 Score=26.01 Aligned_cols=15 Identities=7% Similarity=0.572 Sum_probs=12.0
Q ss_pred chhhHHHHHhCCCcc
Q 007320 473 NSRMQAFTSLYPNLV 487 (608)
Q Consensus 473 ~~~l~pL~~~FPnl~ 487 (608)
+..++.|++|||++-
T Consensus 13 ~e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 13 KDTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHCCCCC
Confidence 345888999999874
No 6
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]}
Probab=15.29 E-value=95 Score=27.02 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=35.2
Q ss_pred EEEEEecCchhhHHHHHHHHHHHHHHhcCeEeecccccCcccCCCCCCCcccchHHHHHhccc
Q 007320 182 YIMVSANGGLNQQRVAICNAVAVASLLNATLVLPRFLYSNVWKDPSQFGDIYQEEYFISVLKH 244 (608)
Q Consensus 182 Yl~V~~nGGLNQqR~~IcDaVaVAriLNATLViP~l~~~s~WkD~S~F~DIFD~dhFI~~Lk~ 244 (608)
.+.+.+.|.. .+.--+|+-+|+.|++-.|||- + |+.....| ++=..|.|++.++.
T Consensus 130 va~lpigg~~---~m~~~ea~~~~~~l~pk~viP~-H---~~t~~~~~-~~~~~~~f~~~~~~ 184 (209)
T d1vjna_ 130 VLLVPVGGTY---TIGPKEAKEVADLLNAKVIIPM-H---YKTKYLKF-NLLPVDDFLKLFDS 184 (209)
T ss_dssp EEEEECCSSS---SCCHHHHHHHHHHTTCSEEEEE-S---CCCSSCCT-TCCCTHHHHTTSSC
T ss_pred EEEEecCCcc---ccCHHHHHHHHHHhCCCEEEEe-c---cCCccccc-CcCCHHHHHHHhhh
Confidence 4555554432 2456789999999999999995 1 22222233 45567888887764
No 7
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Probab=12.18 E-value=73 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.049 Sum_probs=23.8
Q ss_pred cCCCCcC-CHHHHHHHHHHcCCCCccEEEEE
Q 007320 436 KLGRCPL-TPEEAALLLSALGFKHGTYIYLA 465 (608)
Q Consensus 436 ~~G~CPL-TPeEvgl~LraLGf~~~T~IYLA 465 (608)
..|.=|| +|++..-.|+.+|.+++|.|-|=
T Consensus 65 ~~~~~~lP~~~~~~~~l~~lGI~~~~~VVvY 95 (156)
T d1okga1 65 STARHPLPPCAEFIDWCMANGMAGELPVLCY 95 (156)
T ss_dssp CCCSSCCCCHHHHHHHHHHTTCSSSSCEEEE
T ss_pred CCCccccCCHHHHHHHHHhccccCCceEEEE
Confidence 3444344 89999999999999999987763
No 8
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC {Salmonella typhimurium [TaxId: 90371]}
Probab=11.55 E-value=48 Score=27.35 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHcCCCCc
Q 007320 441 PLTPEEAALLLSALGFKHG 459 (608)
Q Consensus 441 PLTPeEvgl~LraLGf~~~ 459 (608)
.|-|.||+.+|..-||..+
T Consensus 2 YLRPDEVArVLe~aGF~~d 20 (112)
T d2g7ja1 2 YLRPDEVARVLEKAGFTVD 20 (112)
T ss_dssp CCCHHHHHHHHHHTTCEEE
T ss_pred CcChHHHHHHHHHcCceEE
Confidence 3789999999999999765
No 9
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.32 E-value=50 Score=30.22 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=16.8
Q ss_pred HHHHHcCCCCccEEEEEecc
Q 007320 449 LLLSALGFKHGTYIYLAGSQ 468 (608)
Q Consensus 449 l~LraLGf~~~T~IYLA~ge 468 (608)
-.=++|||++.|.||++--.
T Consensus 83 ~~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 83 FHARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHHTTCCSSCEEEEECCT
T ss_pred HHHHHcCCCCCCEEEEEecc
Confidence 35578999999999999764
No 10
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=11.06 E-value=64 Score=24.33 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.2
Q ss_pred hcCCCCcCCHHHHHHHHHHcCCCC
Q 007320 435 RKLGRCPLTPEEAALLLSALGFKH 458 (608)
Q Consensus 435 R~~G~CPLTPeEvgl~LraLGf~~ 458 (608)
+..|.. ++++|+.-+|+.|||.-
T Consensus 14 ~~lG~~-i~~~~i~~~L~~Lg~~~ 36 (75)
T d1jjcb2 14 RLLGTS-YPEAEQIAILKRLGCRV 36 (75)
T ss_dssp HHHTCC-CCHHHHHHHHHHTTCEE
T ss_pred HHhCCC-CCHHHHHHHHHHcCCce
Confidence 445665 99999999999999963
Done!