Query 007321
Match_columns 608
No_of_seqs 218 out of 632
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 21:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1362 Choline transporter-li 100.0 1.4E-63 3.1E-68 552.6 32.9 359 187-583 141-554 (577)
2 PF04515 Choline_transpo: Plas 100.0 3.4E-58 7.3E-63 484.7 26.4 289 253-574 2-329 (334)
3 KOG1924 RhoA GTPase effector D 98.3 7.7E-07 1.7E-11 100.6 5.4 20 273-292 795-814 (1102)
4 KOG1924 RhoA GTPase effector D 98.1 3.2E-06 6.9E-11 95.8 4.8 19 24-46 488-506 (1102)
5 PRK15319 AIDA autotransporter- 95.4 0.017 3.8E-07 72.0 5.3 10 352-361 1843-1852(2039)
6 KOG4672 Uncharacterized conser 95.3 0.05 1.1E-06 58.8 7.7 11 72-82 307-317 (487)
7 KOG4672 Uncharacterized conser 94.7 0.12 2.7E-06 55.9 8.6 10 82-91 298-307 (487)
8 PHA03247 large tegument protei 93.2 0.2 4.4E-06 64.6 7.6 23 267-289 3116-3139(3151)
9 KOG4849 mRNA cleavage factor I 93.1 0.35 7.5E-06 51.6 8.2 19 60-78 213-231 (498)
10 KOG0559 Dihydrolipoamide succi 92.5 0.47 1E-05 51.0 8.2 19 37-55 123-141 (457)
11 KOG3671 Actin regulatory prote 92.4 0.24 5.1E-06 55.1 6.1 8 25-32 264-271 (569)
12 PRK09752 adhesin; Provisional 92.2 0.14 3E-06 62.2 4.3 11 352-362 1062-1072(1250)
13 PF11081 DUF2890: Protein of u 90.1 0.89 1.9E-05 45.0 6.9 13 142-154 121-133 (187)
14 COG5178 PRP8 U5 snRNP spliceos 89.8 0.25 5.3E-06 59.4 3.2 8 213-220 123-130 (2365)
15 PRK15313 autotransport protein 89.0 0.59 1.3E-05 55.9 5.6 10 352-361 755-764 (955)
16 COG5178 PRP8 U5 snRNP spliceos 88.8 0.29 6.4E-06 58.8 2.9 8 215-222 114-121 (2365)
17 KOG1830 Wiskott Aldrich syndro 88.6 1.5 3.3E-05 48.0 7.9 20 84-103 299-318 (518)
18 KOG2675 Adenylate cyclase-asso 87.1 0.72 1.6E-05 50.7 4.4 14 100-113 227-240 (480)
19 KOG0917 Uncharacterized conser 85.2 3.6 7.8E-05 42.9 8.0 16 62-77 231-246 (338)
20 PF09026 CENP-B_dimeris: Centr 83.2 0.37 7.9E-06 42.5 0.0 12 10-21 10-21 (101)
21 KOG2236 Uncharacterized conser 81.6 3.3 7.2E-05 46.0 6.5 13 56-68 376-388 (483)
22 KOG0391 SNF2 family DNA-depend 79.5 3.3 7.2E-05 50.8 6.1 6 73-78 1841-1846(1958)
23 PF02993 MCPVI: Minor capsid p 78.6 0.66 1.4E-05 47.4 0.0 11 7-17 97-107 (238)
24 PF01690 PLRV_ORF5: Potato lea 78.5 1.6 3.5E-05 48.6 2.9 9 136-144 32-40 (465)
25 KOG1922 Rho GTPase effector BN 77.6 6.3 0.00014 47.5 7.9 17 442-458 715-731 (833)
26 KOG3397 Acetyltransferases [Ge 76.8 2.8 6.1E-05 41.1 3.7 15 94-108 169-183 (225)
27 PF10446 DUF2457: Protein of u 76.2 5.8 0.00013 44.0 6.3 13 54-66 100-112 (458)
28 KOG1925 Rac1 GTPase effector F 76.1 4.5 9.7E-05 45.4 5.4 33 4-37 148-180 (817)
29 KOG3895 Synaptic vesicle prote 75.7 7.4 0.00016 42.1 6.8 20 94-113 424-443 (488)
30 PF12238 MSA-2c: Merozoite sur 75.5 2.1 4.6E-05 43.0 2.6 30 24-53 80-110 (205)
31 PRK14948 DNA polymerase III su 75.0 5 0.00011 46.9 5.9 10 45-54 502-511 (620)
32 PRK13855 type IV secretion sys 73.8 5 0.00011 43.8 5.1 18 33-50 12-29 (376)
33 PF12238 MSA-2c: Merozoite sur 73.0 7.6 0.00016 39.1 5.8 13 22-34 93-105 (205)
34 KOG3655 Drebrins and related a 70.4 9.3 0.0002 42.7 6.2 14 2-15 238-251 (484)
35 KOG1955 Ral-GTPase effector RA 69.9 6.7 0.00015 44.0 5.0 12 93-104 491-502 (737)
36 PHA03211 serine/threonine kina 69.7 4.2 9.2E-05 45.6 3.6 15 560-574 431-445 (461)
37 PF05750 Rubella_Capsid: Rubel 69.4 3.9 8.5E-05 40.2 2.8 7 94-100 80-86 (300)
38 KOG2391 Vacuolar sorting prote 69.2 6.7 0.00014 42.1 4.7 15 121-135 168-182 (365)
39 KOG4307 RNA binding protein RB 68.8 17 0.00037 42.5 8.0 21 40-60 137-157 (944)
40 KOG4590 Signal transduction pr 68.6 10 0.00022 42.0 6.1 9 269-277 384-392 (409)
41 PF05518 Totivirus_coat: Totiv 67.6 18 0.00039 42.8 8.1 15 75-90 683-697 (759)
42 PF09026 CENP-B_dimeris: Centr 67.6 1.7 3.8E-05 38.4 0.0 10 11-20 15-24 (101)
43 PF10446 DUF2457: Protein of u 67.4 13 0.00028 41.3 6.6 7 85-91 283-289 (458)
44 COG5373 Predicted membrane pro 67.0 11 0.00024 44.8 6.2 13 121-133 99-111 (931)
45 PF00558 Vpu: Vpu protein; In 63.5 3.6 7.8E-05 35.5 1.1 26 7-32 42-67 (81)
46 KOG0132 RNA polymerase II C-te 63.5 35 0.00075 40.6 9.2 12 126-137 656-667 (894)
47 PTZ00449 104 kDa microneme/rho 63.0 42 0.00092 38.3 9.5 15 106-120 634-648 (943)
48 PRK13855 type IV secretion sys 62.4 19 0.00041 39.5 6.6 7 285-291 225-231 (376)
49 PF15195 TMEM210: TMEM210 fami 61.9 11 0.00024 33.4 3.8 39 4-48 43-81 (116)
50 COG3147 DedD Uncharacterized p 61.2 40 0.00086 34.3 8.1 17 20-36 31-47 (226)
51 PRK03427 cell division protein 60.7 33 0.00071 37.1 7.9 23 37-59 61-83 (333)
52 COG5373 Predicted membrane pro 60.6 11 0.00024 44.8 4.7 7 94-100 82-88 (931)
53 PF07462 MSP1_C: Merozoite sur 58.8 16 0.00035 41.6 5.4 9 10-18 136-144 (574)
54 KOG2546 Abl interactor ABI-1, 57.6 13 0.00029 41.0 4.4 11 67-77 319-329 (483)
55 KOG2500 Uncharacterized conser 55.0 36 0.00078 34.8 6.6 8 31-38 150-157 (253)
56 KOG0639 Transducin-like enhanc 54.2 57 0.0012 37.1 8.6 16 27-42 211-226 (705)
57 PF04652 DUF605: Vta1 like; I 54.2 4.1 8.9E-05 44.2 -0.1 6 190-195 371-376 (380)
58 PF10529 Hist_rich_Ca-bd: Hist 53.1 6.1 0.00013 23.5 0.6 11 20-30 4-14 (15)
59 KOG3034 Isoamyl acetate-hydrol 52.4 8.2 0.00018 40.7 1.8 42 8-57 22-63 (308)
60 PHA03211 serine/threonine kina 51.6 26 0.00057 39.3 5.8 8 146-153 65-72 (461)
61 PF15387 DUF4611: Domain of un 50.8 8.3 0.00018 34.0 1.2 9 6-14 48-56 (96)
62 PLN02983 biotin carboxyl carri 50.7 27 0.00058 36.7 5.1 11 43-53 114-124 (274)
63 PF03154 Atrophin-1: Atrophin- 49.9 71 0.0015 39.0 9.0 19 582-600 736-754 (982)
64 KOG2140 Uncharacterized conser 49.0 6.7 0.00015 44.5 0.6 26 11-36 412-437 (739)
65 PF05518 Totivirus_coat: Totiv 48.5 36 0.00077 40.5 6.2 22 77-98 680-701 (759)
66 PF01056 Myc_N: Myc amino-term 48.3 6 0.00013 42.6 0.1 6 30-35 246-251 (329)
67 PRK14849 putative lipoprotein/ 47.4 13 0.00027 48.0 2.6 9 353-361 1602-1610(1806)
68 PTZ00415 transmission-blocking 47.2 13 0.00029 47.3 2.7 17 431-447 636-652 (2849)
69 PLN03132 NADH dehydrogenase (u 46.8 14 0.0003 41.7 2.6 17 442-458 375-391 (461)
70 PF15451 DUF4632: Domain of un 46.6 7.7 0.00017 31.5 0.4 20 15-37 6-25 (71)
71 PTZ00438 gamete antigen 27/25- 46.3 9 0.0002 39.8 0.9 30 9-43 102-131 (374)
72 PRK12270 kgd alpha-ketoglutara 46.2 44 0.00095 41.1 6.6 6 215-220 183-188 (1228)
73 KOG4090 Uncharacterized conser 46.0 46 0.00099 32.1 5.5 8 84-91 4-11 (157)
74 PF05053 Menin: Menin; InterP 45.4 5.4 0.00012 45.6 -0.9 10 136-145 557-566 (618)
75 PRK14948 DNA polymerase III su 45.4 64 0.0014 37.9 7.8 7 94-100 537-543 (620)
76 KOG0391 SNF2 family DNA-depend 44.4 24 0.00052 43.9 4.1 25 121-145 1899-1925(1958)
77 KOG3130 Uncharacterized conser 44.0 13 0.00027 40.9 1.6 28 28-55 285-312 (514)
78 KOG2675 Adenylate cyclase-asso 42.6 67 0.0015 35.9 6.8 7 139-145 328-334 (480)
79 PF10873 DUF2668: Protein of u 42.2 38 0.00082 32.4 4.3 7 71-77 101-107 (155)
80 PF10110 GPDPase_memb: Membran 42.0 1.2E+02 0.0026 28.5 7.8 33 433-465 104-136 (149)
81 KOG0559 Dihydrolipoamide succi 41.8 46 0.00099 36.4 5.3 13 121-133 206-218 (457)
82 PF05297 Herpes_LMP1: Herpesvi 41.4 8.8 0.00019 40.4 0.0 28 190-217 46-73 (381)
83 PF05750 Rubella_Capsid: Rubel 40.0 19 0.00041 35.6 2.0 11 123-133 118-128 (300)
84 KOG2418 Microtubule-associated 39.5 85 0.0018 34.3 6.9 7 82-88 180-186 (448)
85 COG5137 Histone chaperone invo 39.2 13 0.00028 37.7 0.8 19 19-37 185-203 (279)
86 KOG4592 Uncharacterized conser 39.0 39 0.00084 39.2 4.5 20 75-94 99-118 (728)
87 KOG1925 Rac1 GTPase effector F 38.9 43 0.00094 38.0 4.8 19 97-115 239-257 (817)
88 KOG4462 WASP-interacting prote 38.8 82 0.0018 34.3 6.6 19 94-112 321-339 (437)
89 KOG1546 Metacaspase involved i 38.4 41 0.0009 36.2 4.4 11 125-135 53-63 (362)
90 KOG1307 K+-dependent Ca2+/Na+ 38.4 15 0.00032 41.3 1.1 9 149-157 424-432 (588)
91 PHA03378 EBNA-3B; Provisional 38.1 1E+02 0.0022 36.4 7.6 18 51-68 667-684 (991)
92 PF15345 TMEM51: Transmembrane 38.1 78 0.0017 32.6 6.1 11 38-48 124-134 (233)
93 KOG1307 K+-dependent Ca2+/Na+ 37.3 11 0.00024 42.2 0.0 7 142-148 421-427 (588)
94 PF02724 CDC45: CDC45-like pro 37.2 19 0.00041 42.2 1.9 8 140-147 209-216 (622)
95 PHA03282 envelope glycoprotein 37.1 66 0.0014 36.3 5.8 44 37-80 112-156 (540)
96 PF01698 FLO_LFY: Floricaula / 36.9 11 0.00025 41.1 0.0 17 60-77 3-19 (386)
97 PF12794 MscS_TM: Mechanosensi 35.4 14 0.0003 40.0 0.3 12 8-19 260-271 (340)
98 KOG4451 Uncharacterized conser 35.2 16 0.00034 37.4 0.6 6 32-37 147-152 (286)
99 KOG0943 Predicted ubiquitin-pr 35.2 28 0.0006 43.2 2.7 91 11-133 1740-1830(3015)
100 PF15470 DUF4637: Domain of un 34.8 26 0.00056 33.4 1.9 20 139-158 139-158 (173)
101 PF03153 TFIIA: Transcription 34.7 16 0.00034 39.8 0.6 18 34-51 302-319 (375)
102 TIGR01299 synapt_SV2 synaptic 34.2 4.3E+02 0.0093 31.9 12.5 17 206-222 216-232 (742)
103 PF15470 DUF4637: Domain of un 33.6 18 0.0004 34.3 0.8 25 128-153 75-99 (173)
104 KOG0577 Serine/threonine prote 33.5 1.1E+02 0.0023 36.1 6.8 36 54-89 376-411 (948)
105 PF14017 DUF4233: Protein of u 33.4 3.7E+02 0.008 24.4 10.3 26 252-278 78-103 (107)
106 KOG3837 Uncharacterized conser 33.4 58 0.0012 36.3 4.6 8 111-118 177-184 (523)
107 PF15195 TMEM210: TMEM210 fami 33.1 33 0.00071 30.5 2.2 11 62-72 81-91 (116)
108 PRK10649 hypothetical protein; 32.7 1.9E+02 0.0041 33.7 9.0 27 204-230 48-74 (577)
109 KOG0296 Angio-associated migra 32.1 18 0.00039 39.3 0.5 34 47-87 54-87 (399)
110 PF03348 Serinc: Serine incorp 32.0 20 0.00043 40.1 0.9 16 22-37 330-345 (429)
111 PRK12766 50S ribosomal protein 30.8 20 0.00043 36.8 0.6 11 13-23 60-70 (232)
112 KOG1945 Protein phosphatase 1 30.6 40 0.00086 36.7 2.8 7 122-128 54-60 (377)
113 PF05399 EVI2A: Ectropic viral 30.4 3.3E+02 0.0071 27.8 8.9 19 135-153 118-136 (227)
114 KOG3088 Secretory carrier memb 30.3 13 0.00029 39.1 -0.7 29 8-36 65-93 (313)
115 KOG2677 Stoned B synaptic vesi 30.3 1.4E+02 0.0029 35.2 7.0 16 372-387 544-559 (922)
116 PF05858 BIV_Env: Bovine immun 30.1 15 0.00032 40.5 -0.5 34 10-43 3-38 (548)
117 PRK13732 single-stranded DNA-b 29.9 85 0.0018 30.9 4.8 11 4-15 17-27 (175)
118 PLN02983 biotin carboxyl carri 29.0 85 0.0018 33.1 4.8 16 38-53 120-135 (274)
119 PHA03356 tegument protein UL11 28.8 87 0.0019 27.2 4.0 7 76-82 51-57 (93)
120 TIGR01363 strep_his_triad stre 28.7 42 0.0009 35.9 2.5 13 10-22 147-159 (348)
121 KOG4317 Predicted Zn-finger pr 28.4 26 0.00057 37.4 1.0 30 7-37 71-109 (383)
122 KOG2652 RNA polymerase II tran 27.0 34 0.00074 36.9 1.6 10 40-49 289-298 (348)
123 KOG1985 Vesicle coat complex C 26.8 1.4E+02 0.003 36.1 6.4 76 54-141 60-135 (887)
124 KOG3655 Drebrins and related a 26.5 1.3E+02 0.0028 34.1 5.8 10 26-35 209-218 (484)
125 KOG2153 Protein involved in th 26.4 26 0.00057 40.8 0.6 22 564-587 659-680 (704)
126 COG5386 Cell surface protein [ 26.1 59 0.0013 34.9 3.1 6 32-37 144-149 (352)
127 PHA03132 thymidine kinase; Pro 25.5 2.3E+02 0.005 33.2 7.9 8 367-374 411-418 (580)
128 KOG3832 Predicted amino acid t 25.1 42 0.00092 34.1 1.7 16 65-80 112-127 (319)
129 PHA03419 E4 protein; Provision 25.0 1.3E+02 0.0028 30.1 5.0 12 187-198 185-196 (200)
130 KOG2677 Stoned B synaptic vesi 25.0 2.4E+02 0.0053 33.2 7.8 7 69-75 65-71 (922)
131 KOG2141 Protein involved in hi 24.9 80 0.0017 37.5 4.1 11 411-421 653-663 (822)
132 PHA03291 envelope glycoprotein 24.6 2.1E+02 0.0045 31.4 6.7 74 57-138 183-256 (401)
133 PF01698 FLO_LFY: Floricaula / 24.4 25 0.00054 38.5 0.0 8 187-194 85-92 (386)
134 KOG4346 Uncharacterized conser 24.4 85 0.0018 37.1 4.1 57 10-69 433-489 (849)
135 TIGR00927 2A1904 K+-dependent 24.4 1.5E+03 0.032 28.5 14.5 16 38-53 282-297 (1096)
136 KOG4167 Predicted DNA-binding 23.9 1.1E+02 0.0023 36.5 4.8 16 9-24 680-695 (907)
137 PLN03132 NADH dehydrogenase (u 23.9 57 0.0012 37.0 2.6 13 392-404 361-373 (461)
138 KOG2927 Membrane component of 23.8 1.2E+02 0.0025 33.2 4.8 62 196-267 187-250 (372)
139 KOG2546 Abl interactor ABI-1, 23.8 94 0.002 34.7 4.1 8 84-91 332-339 (483)
140 KOG3294 WW domain binding prot 23.6 1.6E+02 0.0036 30.5 5.5 10 67-76 145-154 (261)
141 KOG3375 Phosphoprotein/predict 22.8 35 0.00076 32.6 0.6 9 81-89 89-97 (174)
142 PLN00034 mitogen-activated pro 22.7 1.5E+02 0.0033 31.2 5.5 18 558-575 302-319 (353)
143 PRK14954 DNA polymerase III su 22.6 2.3E+02 0.0049 33.5 7.3 83 53-135 373-458 (620)
144 KOG2399 K+-dependent Na+:Ca2+ 22.5 1.3E+03 0.029 27.2 17.4 20 198-217 416-435 (605)
145 PF06570 DUF1129: Protein of u 22.3 7.8E+02 0.017 24.4 14.0 22 255-276 181-202 (206)
146 KOG4307 RNA binding protein RB 22.1 2.6E+02 0.0057 33.3 7.4 6 105-110 222-227 (944)
147 PRK06975 bifunctional uroporph 21.5 1.4E+02 0.003 35.3 5.4 26 270-295 435-462 (656)
148 COG2194 Predicted membrane-ass 21.3 1.3E+03 0.029 26.8 15.7 26 198-223 45-70 (555)
149 PF15402 Spc7_N: N-terminus of 20.9 2.4E+02 0.0052 34.8 7.1 20 67-86 643-662 (927)
150 PRK14971 DNA polymerase III su 20.6 1.8E+02 0.0039 34.2 5.9 9 189-197 500-508 (614)
151 PRK10781 rcsF outer membrane l 20.6 96 0.0021 29.3 3.0 10 133-142 45-54 (133)
152 KOG0772 Uncharacterized conser 20.3 41 0.00088 38.3 0.6 7 79-85 161-167 (641)
153 PF09849 DUF2076: Uncharacteri 20.3 1.4E+02 0.003 31.2 4.4 12 166-177 151-162 (247)
No 1
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.4e-63 Score=552.59 Aligned_cols=359 Identities=23% Similarity=0.440 Sum_probs=289.9
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHH--HHhhccC------C-----c---
Q 007321 187 EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGIL--LICFQKP------A-----T--- 250 (608)
Q Consensus 187 ~~~dl~~~~~~i~~~~~is~vls~~wl~LLR~~~r~li~~~vw~~iil~i~~~i~--~~~~~~~------~-----~--- 250 (608)
...|+..+|+.++..+.++++++++|+.++|++++. ++|+.+++.+...++ ..|+..+ . +
T Consensus 141 i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~----l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~ 216 (577)
T KOG1362|consen 141 IFADILRSWYTILSLLGIALVLSLIFTKLLRFLAAI----LPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSL 216 (577)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHH
Confidence 667899999999999999999999999999976664 467666655544332 1222110 0 0
Q ss_pred -----------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 007321 251 -----------DGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIG 319 (608)
Q Consensus 251 -----------~~~~i~~~i~aii~~ly~~~~r~RI~~aiaiLk~As~~i~~~p~L~~~~i~~~ii~~~~~~~W~~~~iG 319 (608)
+..+|+..++.++.++|++++|+||+++++++|+|+|++.+.|+++++|++++++.++|+++|+...++
T Consensus 217 ~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~ 296 (577)
T KOG1362|consen 217 FVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALF 296 (577)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 136888888888888899999999999999999999999999999999999999999999999988762
Q ss_pred c--cc--------ccCch----HHHHHHHHH-HHHHHHHHhhcccccccceEEEEeecCCC-----ccHHHHHHHHHhhc
Q 007321 320 A--LN--------FYFPP----LIIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQN 379 (608)
Q Consensus 320 ~--~~--------~~~~~----~~~~~~lf~-~~Wt~~fi~~v~~~tvAgvva~WYF~~~~-----~pv~~S~~ra~tyh 379 (608)
- .+ ..|++ .+++++++. ++|+++|+.|++|+++||++++|||++++ .|+..|++|+++||
T Consensus 297 l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yh 376 (577)
T KOG1362|consen 297 LVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYH 376 (577)
T ss_pred HhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHh
Confidence 2 11 22322 366667776 99999999999999999999999997543 68999999999999
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhhh-ccCC----CchhHHhHHHHHHHHHHHHHhhhhhHHHHHhhcCCchhHhHHHHH
Q 007321 380 LGSACLGSLFVPTIEALRIVARGLNL-LEGE----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTW 454 (608)
Q Consensus 380 fGSIcfGSLIvaiI~~lR~il~~l~~-~~~~----~~~l~~c~~C~l~cle~~l~yiNk~AyI~iAI~G~~F~~SAk~a~ 454 (608)
+||+|+|||++++|+++|.++|++++ +++. .++++||++||+||+|++++|+|||||+|+|||||+||+||||||
T Consensus 377 lGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~ 456 (577)
T KOG1362|consen 377 LGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAW 456 (577)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHH
Confidence 99999999999999999999999986 4443 369999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhccchhhHHHHHhhhhHHHHHHHHHHHHHhhccCCC--chhHHHHHHHHHh-hhcccccccchhhhhhcc
Q 007321 455 ALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQP--FTATISLLTFIIG-YLMVSFPFPISLIALSFQ 531 (608)
Q Consensus 455 ~Ll~rn~~~alVnd~l~~~vLfLgkl~vg~i~~l~~~~~~~~~~~~--~~~~p~l~~flIg-y~i~s~~~~~~s~~~~~~ 531 (608)
+|++||..+....|.++++++|+||++++ +++.++..|....+++ ++..+.++++++| |+|
T Consensus 457 ~ll~~Nv~~vv~~d~vs~~llflgk~l~~-~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylI--------------- 520 (577)
T KOG1362|consen 457 ELLRRNVLRVVDVDLVSDFLLFLGKLLGA-IGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLI--------------- 520 (577)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHH---------------
Confidence 99999944444444466677777776665 4444444454444544 3345557788888 999
Q ss_pred cccchhhhhhhhhcccccccccchhhhHHHHHHHHhhcccCCCccccccchH
Q 007321 532 HGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKD 583 (608)
Q Consensus 532 ~gf~~~~~~~~~~~~~~~~~~~~~v~~s~VdTifvCfaeDpe~~~~~~~~p~ 583 (608)
++++++|++|||||+|+||+||||+...+.+.|.
T Consensus 521 ------------------a~~f~~v~~m~VdtlflCf~eD~e~n~gs~~~p~ 554 (577)
T KOG1362|consen 521 ------------------AHIFFSVLEMCVDTLFLCFAEDPESNDGSPEKPQ 554 (577)
T ss_pred ------------------HHHHHHHHHHHHHHhhheeEecHhhcCCCCCcce
Confidence 8999999999999999999999997444433443
No 2
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=100.00 E-value=3.4e-58 Score=484.68 Aligned_cols=289 Identities=26% Similarity=0.501 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHhc-----cc-----
Q 007321 253 VGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGA-----LN----- 322 (608)
Q Consensus 253 ~~i~~~i~aii~~ly~~~~r~RI~~aiaiLk~As~~i~~~p~L~~~~i~~~ii~~~~~~~W~~~~iG~-----~~----- 322 (608)
.+++..+++++.++++++.||||++|++++|+|+++++++|+++++|+++.++.++|+++|+.+..+. ..
T Consensus 2 ~~ii~~i~~~i~~~~~~~~r~rI~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l~~~g~~~~~~~~ 81 (334)
T PF04515_consen 2 FAIIFLILALIIILFIIFLRKRIPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYLFSIGSPVINPCN 81 (334)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 34556666666666777789999999999999999999999999999999999999999999887622 10
Q ss_pred c------------c---CchHHHHHHHHHHHHHHHHHhhcccccccceEEEEeecCCC-----ccHHHHHHHHHhhchhh
Q 007321 323 F------------Y---FPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQNLGS 382 (608)
Q Consensus 323 ~------------~---~~~~~~~~~lf~~~Wt~~fi~~v~~~tvAgvva~WYF~~~~-----~pv~~S~~ra~tyhfGS 382 (608)
. + ...++.+|++|+++|+++|++|++|+++||++++|||++++ .|+.+|++|+++|||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~W~~~~i~~~~~~~vag~v~~WYF~~~~~~~~~~~~~~s~~~~~~~~~GS 161 (334)
T PF04515_consen 82 LPFSSGSISCCQFVFDSWSYWLIIYHLFSFFWTSQFILNVQQFTVAGVVAQWYFSRDKPNMPKSPVLRSLKRALTYHFGS 161 (334)
T ss_pred CCcccccccceeeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecCCcccccchHHHHHHHHHHHHhHHH
Confidence 0 1 12357899999999999999999999999999999997543 68999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhccCC-----CchhHHhHHHHHHHHHHHHHhhhhhHHHHHhhcCCchhHhHHHHHHHH
Q 007321 383 ACLGSLFVPTIEALRIVARGLNLLEGE-----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALF 457 (608)
Q Consensus 383 IcfGSLIvaiI~~lR~il~~l~~~~~~-----~~~l~~c~~C~l~cle~~l~yiNk~AyI~iAI~G~~F~~SAk~a~~Ll 457 (608)
+|+|||++++++++|.+++++++..++ .+++.||++||++|+|+++||+|||||+|+||||++||+|||++++|+
T Consensus 162 i~~gSlivaiv~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~e~~l~~~n~~ayi~~ai~G~~F~~sak~~~~L~ 241 (334)
T PF04515_consen 162 ICFGSLIVAIVQFLRFLLRYLRRRAKKSQNKFVKFILCCLSCCLWCLEKFLEYINKYAYIYIAIYGKSFCESAKRAFELI 241 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999999999999999999998875433 358999999999999999999999999999999999999999999999
Q ss_pred HhcCchhhccchhhHHHHHhhhhHHHHHHHHHHHHHhhc----cCCCchhHHHHHHHHHhhhcccccccchhhhhhcccc
Q 007321 458 ERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAK----VHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHG 533 (608)
Q Consensus 458 ~rn~~~alVnd~l~~~vLfLgkl~vg~i~~l~~~~~~~~----~~~~~~~~p~l~~flIgy~i~s~~~~~~s~~~~~~~g 533 (608)
+||+.++.++|++++.++++||++++++++++++.+... .+.++...|.++++++||.+
T Consensus 242 ~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i----------------- 304 (334)
T PF04515_consen 242 KRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALISFFIGYFI----------------- 304 (334)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999988763 23455668999999999999
Q ss_pred cchhhhhhhhhcccccccccchhhhHHHHHHHHhhcccCCC
Q 007321 534 YSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDN 574 (608)
Q Consensus 534 f~~~~~~~~~~~~~~~~~~~~~v~~s~VdTifvCfaeDpe~ 574 (608)
++++++++++++||+|+||+||||.
T Consensus 305 ----------------~~~f~~v~~~~vdti~vc~~~d~e~ 329 (334)
T PF04515_consen 305 ----------------SSIFMSVYSSAVDTIFVCYAEDPEM 329 (334)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8899999999999999999999995
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.27 E-value=7.7e-07 Score=100.57 Aligned_cols=20 Identities=10% Similarity=-0.041 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHhHhhhhc
Q 007321 273 QRIGFCCKVLIISLQPVSKF 292 (608)
Q Consensus 273 ~RI~~aiaiLk~As~~i~~~ 292 (608)
+-|+=++.-..+||.=+++-
T Consensus 795 nniKP~i~avt~ACEE~rkS 814 (1102)
T KOG1924|consen 795 NNIKPDIVAVTAACEELRKS 814 (1102)
T ss_pred hhcChHHHHHHHHHHHHHhh
Confidence 44444555555566655553
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.07 E-value=3.2e-06 Score=95.76 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=10.7
Q ss_pred CCCchhhhhhhcCcceeeeeeec
Q 007321 24 GGGEEEVKDVEKGEVVVEEKVVD 46 (608)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~ 46 (608)
-+.||++++..|-| ||+-+
T Consensus 488 ta~qe~qael~k~e----~Ki~~ 506 (1102)
T KOG1924|consen 488 TARQEAQAELQKHE----EKIKL 506 (1102)
T ss_pred hHHHHHHHHHHHhh----hhccc
Confidence 34566666666654 55544
No 5
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=95.42 E-value=0.017 Score=72.02 Aligned_cols=10 Identities=10% Similarity=0.208 Sum_probs=6.5
Q ss_pred ccceEEEEee
Q 007321 352 VCRVISLYYI 361 (608)
Q Consensus 352 vAgvva~WYF 361 (608)
-.|+.+.||.
T Consensus 1843 sLGaYaTWy~ 1852 (2039)
T PRK15319 1843 NLGVYATWFA 1852 (2039)
T ss_pred eEEEEEEeec
Confidence 3466677776
No 6
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=95.31 E-value=0.05 Score=58.81 Aligned_cols=11 Identities=27% Similarity=0.567 Sum_probs=4.7
Q ss_pred CCCCCcccccc
Q 007321 72 NPTNPLRIVIN 82 (608)
Q Consensus 72 ~~~~~~~~~~~ 82 (608)
.|.+||+-+.+
T Consensus 307 ~~~aP~~~~~p 317 (487)
T KOG4672|consen 307 EPDAPLQPIHP 317 (487)
T ss_pred CCCCCcccCCc
Confidence 34444444433
No 7
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=94.72 E-value=0.12 Score=55.89 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=4.2
Q ss_pred cCCccccCCC
Q 007321 82 NGGRRVTAPR 91 (608)
Q Consensus 82 ~~~~~~~~p~ 91 (608)
++.++.+.|+
T Consensus 298 sn~sk~a~P~ 307 (487)
T KOG4672|consen 298 SNLSKTAIPE 307 (487)
T ss_pred cccccccCCC
Confidence 3344444444
No 8
>PHA03247 large tegument protein UL36; Provisional
Probab=93.16 E-value=0.2 Score=64.61 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=14.1
Q ss_pred HHHH-HhhhHHHHHHHHHHHhHhh
Q 007321 267 YACW-VSQRIGFCCKVLIISLQPV 289 (608)
Q Consensus 267 y~~~-~r~RI~~aiaiLk~As~~i 289 (608)
-.|. +++|++.+=..|...++.+
T Consensus 3116 ~ACr~i~r~lr~TR~~L~~~~~~v 3139 (3151)
T PHA03247 3116 EACRRIRRQLRRTRHALLDRSGAV 3139 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3354 3677887777776665533
No 9
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.12 E-value=0.35 Score=51.57 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=14.5
Q ss_pred CCCCccccccccCCCCCcc
Q 007321 60 QRGFNASMMQTLNPTNPLR 78 (608)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~ 78 (608)
+.|-++=|+|...|++|+.
T Consensus 213 ~~GPPP~~~~Q~~P~P~m~ 231 (498)
T KOG4849|consen 213 RSGPPPLMMQQVRPTPLMS 231 (498)
T ss_pred CCCCCCcccccCCCCCCCC
Confidence 3444778999999998875
No 10
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=92.48 E-value=0.47 Score=50.97 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=13.3
Q ss_pred cceeeeeeecCCCcccccC
Q 007321 37 EVVVEEKVVDSNSNVNINN 55 (608)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~ 55 (608)
.|+++|-.|.....|....
T Consensus 123 sGvi~e~lvk~gdtV~~g~ 141 (457)
T KOG0559|consen 123 SGVITELLVKDGDTVTPGQ 141 (457)
T ss_pred cceeeEEecCCCCcccCCc
Confidence 4788888777777766544
No 11
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=92.45 E-value=0.24 Score=55.05 Aligned_cols=8 Identities=0% Similarity=0.306 Sum_probs=3.2
Q ss_pred CCchhhhh
Q 007321 25 GGEEEVKD 32 (608)
Q Consensus 25 ~~~~~~~~ 32 (608)
+-|++.++
T Consensus 264 ~~dp~~nn 271 (569)
T KOG3671|consen 264 NNDPPLNN 271 (569)
T ss_pred CCChhhhc
Confidence 33444443
No 12
>PRK09752 adhesin; Provisional
Probab=92.19 E-value=0.14 Score=62.24 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=5.9
Q ss_pred ccceEEEEeec
Q 007321 352 VCRVISLYYIL 362 (608)
Q Consensus 352 vAgvva~WYF~ 362 (608)
-.|+.++||-.
T Consensus 1062 SvGlYaTWy~n 1072 (1250)
T PRK09752 1062 AVGLTSSWFQH 1072 (1250)
T ss_pred eeeeEEEEEec
Confidence 34555566653
No 13
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=90.15 E-value=0.89 Score=44.95 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=8.0
Q ss_pred cccccchhHHHHH
Q 007321 142 SKKYTNKISLFLF 154 (608)
Q Consensus 142 s~k~~d~~c~~lF 154 (608)
.+.+.+++|..|+
T Consensus 121 wr~lR~~I~~tLy 133 (187)
T PF11081_consen 121 WRELRNRIFPTLY 133 (187)
T ss_pred HHHHHHHHHHHHH
Confidence 4555677666664
No 14
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.80 E-value=0.25 Score=59.38 Aligned_cols=8 Identities=25% Similarity=0.293 Sum_probs=3.2
Q ss_pred HHHHHHch
Q 007321 213 QKAVRVWP 220 (608)
Q Consensus 213 l~LLR~~~ 220 (608)
+.||-..|
T Consensus 123 lkLLeNmP 130 (2365)
T COG5178 123 LKLLENMP 130 (2365)
T ss_pred HHHHhcCC
Confidence 34444333
No 15
>PRK15313 autotransport protein MisL; Provisional
Probab=89.01 E-value=0.59 Score=55.91 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=5.7
Q ss_pred ccceEEEEee
Q 007321 352 VCRVISLYYI 361 (608)
Q Consensus 352 vAgvva~WYF 361 (608)
-.|+.++||-
T Consensus 755 SlG~YaTWy~ 764 (955)
T PRK15313 755 SVGLYGTWYA 764 (955)
T ss_pred eeEeEEEEec
Confidence 4455666664
No 16
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=88.80 E-value=0.29 Score=58.75 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=3.4
Q ss_pred HHHHchhh
Q 007321 215 AVRVWPKF 222 (608)
Q Consensus 215 LLR~~~r~ 222 (608)
.++++|-.
T Consensus 114 alkylPha 121 (2365)
T COG5178 114 ALKYLPHA 121 (2365)
T ss_pred hhhhchHH
Confidence 34444443
No 17
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=88.59 E-value=1.5 Score=48.01 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=9.8
Q ss_pred CccccCCCCCCCCCCCCCCC
Q 007321 84 GRRVTAPRIATPPPSQPSRQ 103 (608)
Q Consensus 84 ~~~~~~p~~~~~~~~~~~~~ 103 (608)
..|=+.|||+||..+.+..+
T Consensus 299 ~~rPt~pPP~ppl~~~~g~~ 318 (518)
T KOG1830|consen 299 VVRPTQPPPPPPLDSPPGPD 318 (518)
T ss_pred CCCCCCCCCCCCCCCCCCCC
Confidence 44555555555544444333
No 18
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=87.07 E-value=0.72 Score=50.68 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCCC
Q 007321 100 PSRQAPRIATPPPS 113 (608)
Q Consensus 100 ~~~~~~~~~~~~~~ 113 (608)
++..+.++.|||||
T Consensus 227 ~~~~s~~g~PPPPP 240 (480)
T KOG2675|consen 227 PKAASAPGAPPPPP 240 (480)
T ss_pred cCcccCCCCCCCCC
Confidence 33333444444443
No 19
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.21 E-value=3.6 Score=42.87 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=8.8
Q ss_pred CCccccccccCCCCCc
Q 007321 62 GFNASMMQTLNPTNPL 77 (608)
Q Consensus 62 ~~~~~~~~~~~~~~~~ 77 (608)
.|.++++.++-|.+|-
T Consensus 231 s~s~s~~~S~pP~~pa 246 (338)
T KOG0917|consen 231 SFSESSLPSTPPGAPA 246 (338)
T ss_pred ccccccCCCCCCCCcc
Confidence 3445555555565554
No 20
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=83.18 E-value=0.37 Score=42.51 Aligned_cols=12 Identities=8% Similarity=0.426 Sum_probs=0.0
Q ss_pred hhhhhhhhhcCC
Q 007321 10 RETQNKEEEEGG 21 (608)
Q Consensus 10 ~~~~~~~~~~~~ 21 (608)
|++++.+++|++
T Consensus 10 ~dse~dsdEdee 21 (101)
T PF09026_consen 10 EDSESDSDEDEE 21 (101)
T ss_dssp ------------
T ss_pred cccccccccchh
Confidence 444444443333
No 21
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.57 E-value=3.3 Score=45.98 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=7.4
Q ss_pred cCCCCCCCccccc
Q 007321 56 INGEQRGFNASMM 68 (608)
Q Consensus 56 ~~~~~~~~~~~~~ 68 (608)
-.++.+||..++.
T Consensus 376 ~r~~~~gf~rp~s 388 (483)
T KOG2236|consen 376 GRDQNRGFKRPRS 388 (483)
T ss_pred CcccccCCCCccc
Confidence 3455666665555
No 22
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=79.54 E-value=3.3 Score=50.79 Aligned_cols=6 Identities=67% Similarity=1.154 Sum_probs=3.0
Q ss_pred CCCCcc
Q 007321 73 PTNPLR 78 (608)
Q Consensus 73 ~~~~~~ 78 (608)
|.+|||
T Consensus 1841 p~pplr 1846 (1958)
T KOG0391|consen 1841 PFPPLR 1846 (1958)
T ss_pred CCCccc
Confidence 445554
No 23
>PF02993 MCPVI: Minor capsid protein VI; InterPro: IPR004243 This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. Residues at the C-terminal end of the protein may act as a protease cofactor leading to activation of the adenovirus proteinase [].; GO: 0019028 viral capsid; PDB: 1AVP_B.
Probab=78.57 E-value=0.66 Score=47.44 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=0.0
Q ss_pred chhhhhhhhhh
Q 007321 7 VVERETQNKEE 17 (608)
Q Consensus 7 ~~~~~~~~~~~ 17 (608)
-||||+||+-|
T Consensus 97 ~vq~~lekrle 107 (238)
T PF02993_consen 97 KVQKDLEKRLE 107 (238)
T ss_dssp -----------
T ss_pred HHHHHHHHHhc
Confidence 36777777655
No 24
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=78.54 E-value=1.6 Score=48.62 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=4.4
Q ss_pred ccccccccc
Q 007321 136 SRTALNSKK 144 (608)
Q Consensus 136 ~~~~y~s~k 144 (608)
++-.|.-.+
T Consensus 32 RF~~Y~G~p 40 (465)
T PF01690_consen 32 RFIGYEGVP 40 (465)
T ss_pred ceEEEeccc
Confidence 555554444
No 25
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=77.61 E-value=6.3 Score=47.52 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=9.0
Q ss_pred cCCchhHhHHHHHHHHH
Q 007321 442 YGKGFVQASQDTWALFE 458 (608)
Q Consensus 442 ~G~~F~~SAk~a~~Ll~ 458 (608)
-+..|+.+.++-.....
T Consensus 715 ~~~~f~~~~~~fl~~ae 731 (833)
T KOG1922|consen 715 PGDPFSKVKKEFLSSAE 731 (833)
T ss_pred ccchhhhhhhhhhhhHH
Confidence 34566666665444443
No 26
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=76.83 E-value=2.8 Score=41.10 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCCCC
Q 007321 94 TPPPSQPSRQAPRIA 108 (608)
Q Consensus 94 ~~~~~~~~~~~~~~~ 108 (608)
|.+.+|++.+++.+.
T Consensus 169 ~~k~~~~~a~~~~~~ 183 (225)
T KOG3397|consen 169 LSKIAQPSASSTVSA 183 (225)
T ss_pred hhhcCCcccccccCC
Confidence 334455554444333
No 27
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=76.23 E-value=5.8 Score=44.02 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=10.2
Q ss_pred cCcCCCCCCCccc
Q 007321 54 NNINGEQRGFNAS 66 (608)
Q Consensus 54 ~~~~~~~~~~~~~ 66 (608)
-++.|+-.||..|
T Consensus 100 G~~TDnE~GFAdS 112 (458)
T PF10446_consen 100 GNETDNEAGFADS 112 (458)
T ss_pred CccCccccccccc
Confidence 5677888888887
No 28
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=76.10 E-value=4.5 Score=45.40 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=18.7
Q ss_pred CCcchhhhhhhhhhhcCCCCCCCchhhhhhhcCc
Q 007321 4 SDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGE 37 (608)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (608)
++-.-|||.-|+.-+|++.|-| -|-+++.|.|+
T Consensus 148 ~~~s~~~~~~k~~F~~~~~~AE-~~~~~A~~~~~ 180 (817)
T KOG1925|consen 148 ADTSSERSIYKARFLENVAAAE-TEKQVALAQGR 180 (817)
T ss_pred cchhhhhhhHHhHHHhhhHHHH-HHHHHHHHhcc
Confidence 3444567776666666655543 33455666664
No 29
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.74 E-value=7.4 Score=42.09 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 007321 94 TPPPSQPSRQAPRIATPPPS 113 (608)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~ 113 (608)
-|.+.+|.|.++.+.|||++
T Consensus 424 ~pt~~~PprPppqggppP~g 443 (488)
T KOG3895|consen 424 SPTRRLPPRPPPQGGPPPRG 443 (488)
T ss_pred CCCCCCCCCCCCCCCCCCcc
Confidence 34444444444444444433
No 30
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=75.47 E-value=2.1 Score=42.97 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=13.0
Q ss_pred CCCchhhhhhhcCcceeeeeee-cCCCcccc
Q 007321 24 GGGEEEVKDVEKGEVVVEEKVV-DSNSNVNI 53 (608)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 53 (608)
+|+++|.++.=|-.+--+|-+| |-|.-|++
T Consensus 80 ~~~~~~~~~YyKkhIy~~d~~v~d~~~lv~~ 110 (205)
T PF12238_consen 80 EEGREKMTKYYKKHIYKEDSEVKDYNGLVKF 110 (205)
T ss_pred hccHHHHHHHHHHhccCcccccccHHHHHHH
Confidence 3444444444444333344444 44444443
No 31
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.01 E-value=5 Score=46.87 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=4.0
Q ss_pred ecCCCccccc
Q 007321 45 VDSNSNVNIN 54 (608)
Q Consensus 45 ~~~~~~~~~~ 54 (608)
...+-.||+.
T Consensus 502 ~~~~~~~~~~ 511 (620)
T PRK14948 502 LGRSIKLNLE 511 (620)
T ss_pred hCCCeEEEEE
Confidence 3334444443
No 32
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=73.77 E-value=5 Score=43.79 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=7.6
Q ss_pred hhcCcceeeeeeecCCCc
Q 007321 33 VEKGEVVVEEKVVDSNSN 50 (608)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~ 50 (608)
+++.+-.|.++-.|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (376)
T PRK13855 12 VDASGSLVSDTHRRRLSG 29 (376)
T ss_pred CCCCcccccCcccccCcc
Confidence 333333344444444443
No 33
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=72.96 E-value=7.6 Score=39.10 Aligned_cols=13 Identities=31% Similarity=0.197 Sum_probs=6.0
Q ss_pred CCCCCchhhhhhh
Q 007321 22 GEGGGEEEVKDVE 34 (608)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (608)
|=-++|.|+||++
T Consensus 93 hIy~~d~~v~d~~ 105 (205)
T PF12238_consen 93 HIYKEDSEVKDYN 105 (205)
T ss_pred hccCcccccccHH
Confidence 3334445554444
No 34
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=70.35 E-value=9.3 Score=42.71 Aligned_cols=14 Identities=14% Similarity=0.212 Sum_probs=8.4
Q ss_pred CCCCcchhhhhhhh
Q 007321 2 GASDPVVERETQNK 15 (608)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (608)
+++||-.+|.+|-.
T Consensus 238 ~k~e~q~~~~s~~~ 251 (484)
T KOG3655|consen 238 LKAEPQPRRWSEQN 251 (484)
T ss_pred cccCcCCCCcchhc
Confidence 35666666666544
No 35
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.89 E-value=6.7 Score=44.01 Aligned_cols=12 Identities=33% Similarity=0.565 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCC
Q 007321 93 ATPPPSQPSRQA 104 (608)
Q Consensus 93 ~~~~~~~~~~~~ 104 (608)
+|||.+|++|.-
T Consensus 491 ~ppPrpq~sHsr 502 (737)
T KOG1955|consen 491 EPPPRPQSSHSR 502 (737)
T ss_pred CCCCCCcccccc
Confidence 377777777653
No 36
>PHA03211 serine/threonine kinase US3; Provisional
Probab=69.72 E-value=4.2 Score=45.60 Aligned_cols=15 Identities=0% Similarity=-0.215 Sum_probs=8.1
Q ss_pred HHHHHHHhhcccCCC
Q 007321 560 CVSCYYVCYAQNPDN 574 (608)
Q Consensus 560 ~VdTifvCfaeDpe~ 574 (608)
+-|-+--|+..||+.
T Consensus 431 ~~dli~~mL~~DP~~ 445 (461)
T PHA03211 431 VEYLVCRALTFDGAR 445 (461)
T ss_pred HHHHHHHHcccChhh
Confidence 444555556666663
No 37
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=69.40 E-value=3.9 Score=40.23 Aligned_cols=7 Identities=29% Similarity=0.415 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 007321 94 TPPPSQP 100 (608)
Q Consensus 94 ~~~~~~~ 100 (608)
||.--|.
T Consensus 80 ppeerqe 86 (300)
T PF05750_consen 80 PPEERQE 86 (300)
T ss_pred Chhhhhh
Confidence 3333333
No 38
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.20 E-value=6.7 Score=42.14 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCccc
Q 007321 121 ISTSPPAPTPTPQQA 135 (608)
Q Consensus 121 ~~~~~~~~~~~~~~~ 135 (608)
..+-||.|||++++.
T Consensus 168 ~~~~~p~p~p~~~~g 182 (365)
T KOG2391|consen 168 SAYKPPLPPPPPPGG 182 (365)
T ss_pred cCcCCCCCCCCCCCc
Confidence 445555555555543
No 39
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=68.83 E-value=17 Score=42.53 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=9.9
Q ss_pred eeeeeecCCCcccccCcCCCC
Q 007321 40 VEEKVVDSNSNVNINNINGEQ 60 (608)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~ 60 (608)
+|...--.|||+++...+.+.
T Consensus 137 y~a~~~~~~Sn~t~~~f~~~s 157 (944)
T KOG4307|consen 137 YEASYPPQNSNATRTSFNNQS 157 (944)
T ss_pred eeeccCccccccccceecccc
Confidence 333333446666655444433
No 40
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=68.64 E-value=10 Score=42.02 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=3.7
Q ss_pred HHHhhhHHH
Q 007321 269 CWVSQRIGF 277 (608)
Q Consensus 269 ~~~r~RI~~ 277 (608)
|.++.|+-.
T Consensus 384 ~~~~le~~~ 392 (409)
T KOG4590|consen 384 CEVPLEMCK 392 (409)
T ss_pred hhhhHHHHH
Confidence 444444333
No 41
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=67.63 E-value=18 Score=42.79 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=5.9
Q ss_pred CCccccccCCccccCC
Q 007321 75 NPLRIVINGGRRVTAP 90 (608)
Q Consensus 75 ~~~~~~~~~~~~~~~p 90 (608)
.|++++++ ..+..+|
T Consensus 683 ~P~~~~~~-h~~~r~P 697 (759)
T PF05518_consen 683 APLRPTPH-HQPLRAP 697 (759)
T ss_pred CCCCcccc-ccCCCCC
Confidence 34444433 3333344
No 42
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=67.57 E-value=1.7 Score=38.36 Aligned_cols=10 Identities=40% Similarity=0.700 Sum_probs=0.0
Q ss_pred hhhhhhhhcC
Q 007321 11 ETQNKEEEEG 20 (608)
Q Consensus 11 ~~~~~~~~~~ 20 (608)
|++..|+++.
T Consensus 15 dsdEdeeeed 24 (101)
T PF09026_consen 15 DSDEDEEEED 24 (101)
T ss_dssp ----------
T ss_pred ccccchhhhh
Confidence 3333333333
No 43
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=67.36 E-value=13 Score=41.33 Aligned_cols=7 Identities=29% Similarity=0.800 Sum_probs=3.0
Q ss_pred ccccCCC
Q 007321 85 RRVTAPR 91 (608)
Q Consensus 85 ~~~~~p~ 91 (608)
+|.-+||
T Consensus 283 kR~~SPP 289 (458)
T PF10446_consen 283 KRLRSPP 289 (458)
T ss_pred ccccCCC
Confidence 3444443
No 44
>COG5373 Predicted membrane protein [Function unknown]
Probab=67.01 E-value=11 Score=44.83 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=4.9
Q ss_pred CCCCCCCCCCCCc
Q 007321 121 ISTSPPAPTPTPQ 133 (608)
Q Consensus 121 ~~~~~~~~~~~~~ 133 (608)
..+||+..|+|.+
T Consensus 99 a~~~~~~~~apae 111 (931)
T COG5373 99 AVPAPSAAPAPAE 111 (931)
T ss_pred CCCCCCCCCCCCC
Confidence 3333433333333
No 45
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=63.53 E-value=3.6 Score=35.46 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=20.4
Q ss_pred chhhhhhhhhhhcCCCCCCCchhhhh
Q 007321 7 VVERETQNKEEEEGGGEGGGEEEVKD 32 (608)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (608)
-++|=.|+.|...||.|||+|||..+
T Consensus 42 li~RIreraEDSGnES~Gd~EeeL~~ 67 (81)
T PF00558_consen 42 LIERIRERAEDSGNESDGDEEEELSA 67 (81)
T ss_dssp HHHHHHCTTTCCHCTTTTCCHH-CHC
T ss_pred HHHHHHcccccCCCCCCCcHHHHHHH
Confidence 45788889998889888888887776
No 46
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=63.51 E-value=35 Score=40.56 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.1
Q ss_pred CCCCCCCccccc
Q 007321 126 PAPTPTPQQASR 137 (608)
Q Consensus 126 ~~~~~~~~~~~~ 137 (608)
.+||||+.++.+
T Consensus 656 ~~pppp~~p~~~ 667 (894)
T KOG0132|consen 656 QTPPPPMFPQGF 667 (894)
T ss_pred CCCCCCCCccCC
Confidence 334444444443
No 47
>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional
Probab=63.02 E-value=42 Score=38.33 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCCCC
Q 007321 106 RIATPPPSQPSRPRS 120 (608)
Q Consensus 106 ~~~~~~~~~~~~~~~ 120 (608)
+++++|-.|++|.+|
T Consensus 634 KsP~sPqrP~SPkRP 648 (943)
T PTZ00449 634 KRPPPPQRPSSPERP 648 (943)
T ss_pred CCCCCCCCCCCCCCC
Confidence 333333333344444
No 48
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=62.42 E-value=19 Score=39.45 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=2.7
Q ss_pred HhHhhhh
Q 007321 285 SLQPVSK 291 (608)
Q Consensus 285 As~~i~~ 291 (608)
.++++.+
T Consensus 225 GS~liG~ 231 (376)
T PRK13855 225 GTTVVGE 231 (376)
T ss_pred cCEEEEE
Confidence 3333333
No 49
>PF15195 TMEM210: TMEM210 family
Probab=61.88 E-value=11 Score=33.37 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=18.5
Q ss_pred CCcchhhhhhhhhhhcCCCCCCCchhhhhhhcCcceeeeeeecCC
Q 007321 4 SDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSN 48 (608)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (608)
|.+.--|-.++|-+|.-++ |||.-|.. .+-||..+.|.+
T Consensus 43 kgetcP~h~~~Rlv~~~Gv----QEdrmDLh--~V~VEShlmDpD 81 (116)
T PF15195_consen 43 KGETCPGHMDNRLVGHFGV----QEDRMDLH--TVHVESHLMDPD 81 (116)
T ss_pred cCCCCccccccchhhcccc----ccccccce--eeeeeeeccCCC
Confidence 3333345555665555444 33333332 345566666544
No 50
>COG3147 DedD Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.19 E-value=40 Score=34.28 Aligned_cols=17 Identities=6% Similarity=-0.173 Sum_probs=8.3
Q ss_pred CCCCCCCchhhhhhhcC
Q 007321 20 GGGEGGGEEEVKDVEKG 36 (608)
Q Consensus 20 ~~~~~~~~~~~~~~~~~ 36 (608)
..|-+||.++..+.++-
T Consensus 31 ~~~~~de~~a~p~pp~P 47 (226)
T COG3147 31 KKHRQDEVAAIPLPPKP 47 (226)
T ss_pred cccccccccccCCCCCC
Confidence 34444555555555554
No 51
>PRK03427 cell division protein ZipA; Provisional
Probab=60.68 E-value=33 Score=37.12 Aligned_cols=23 Identities=22% Similarity=0.023 Sum_probs=12.3
Q ss_pred cceeeeeeecCCCcccccCcCCC
Q 007321 37 EVVVEEKVVDSNSNVNINNINGE 59 (608)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~ 59 (608)
|||-|.+|..++.+-..+..+++
T Consensus 61 dGvGevrv~~~~~~~~~~~~~~~ 83 (333)
T PRK03427 61 EGVGEVRVHRVNHAPANAQEHEA 83 (333)
T ss_pred cCccceeccCCCCCCCccccccc
Confidence 34445666666655555554443
No 52
>COG5373 Predicted membrane protein [Function unknown]
Probab=60.64 E-value=11 Score=44.82 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 007321 94 TPPPSQP 100 (608)
Q Consensus 94 ~~~~~~~ 100 (608)
||-++|+
T Consensus 82 ~~~~~~e 88 (931)
T COG5373 82 PPAPAQE 88 (931)
T ss_pred CCCCCCC
Confidence 3333443
No 53
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=58.75 E-value=16 Score=41.59 Aligned_cols=9 Identities=56% Similarity=0.737 Sum_probs=4.0
Q ss_pred hhhhhhhhh
Q 007321 10 RETQNKEEE 18 (608)
Q Consensus 10 ~~~~~~~~~ 18 (608)
||.|++|++
T Consensus 136 rEaek~eve 144 (574)
T PF07462_consen 136 REAEKKEVE 144 (574)
T ss_pred hHHHHHHHH
Confidence 444444443
No 54
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=57.61 E-value=13 Score=41.04 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.6
Q ss_pred cccccCCCCCc
Q 007321 67 MMQTLNPTNPL 77 (608)
Q Consensus 67 ~~~~~~~~~~~ 77 (608)
++|.+-|.+|.
T Consensus 319 p~q~~~~~~P~ 329 (483)
T KOG2546|consen 319 PLQPKHPIPPN 329 (483)
T ss_pred ccccCCCCCCc
Confidence 34444444443
No 55
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.97 E-value=36 Score=34.79 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=4.1
Q ss_pred hhhhcCcc
Q 007321 31 KDVEKGEV 38 (608)
Q Consensus 31 ~~~~~~~~ 38 (608)
=--.+||.
T Consensus 150 lgFKEGeT 157 (253)
T KOG2500|consen 150 LGFKEGET 157 (253)
T ss_pred ccccCCcE
Confidence 34555654
No 56
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=54.21 E-value=57 Score=37.11 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=6.9
Q ss_pred chhhhhhhcCcceeee
Q 007321 27 EEEVKDVEKGEVVVEE 42 (608)
Q Consensus 27 ~~~~~~~~~~~~~~~~ 42 (608)
||+++|-..++.||.+
T Consensus 211 d~~d~dksd~~lvvdv 226 (705)
T KOG0639|consen 211 DESDGDKSDDNLVVDV 226 (705)
T ss_pred ccccccccCCceEEee
Confidence 3444444444444443
No 57
>PF04652 DUF605: Vta1 like; InterPro: IPR006745 This family contains proteins from the Eukaryota; functionally they are uncharacterised.; PDB: 2RKK_B 2RKL_B 3MHV_A.
Probab=54.17 E-value=4.1 Score=44.22 Aligned_cols=6 Identities=33% Similarity=0.307 Sum_probs=2.5
Q ss_pred hHHhhH
Q 007321 190 VLKYLL 195 (608)
Q Consensus 190 dl~~~~ 195 (608)
.|++.+
T Consensus 371 ~L~~AL 376 (380)
T PF04652_consen 371 ELRKAL 376 (380)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 344443
No 58
>PF10529 Hist_rich_Ca-bd: Histidine-rich Calcium-binding repeat region; InterPro: IPR019552 This entry represents a histidine-rich calcium-binding repeat which appears in proteins called histidine-rich-calcium binding proteins (HRC). HRC is a high capacity, low affinity Ca2+-binding protein, residing in the lumen of the sarcoplasmic reticulum. HRC binds directly to triadin. This binding interaction occurs between the histidine-rich region of HRC and multiple clusters of charged amino acids, named KEKE motifs, in the lumenal domain of triadin. This repeat is found in the acidic region of the protein, which can be long and variable. There is also a cysteine-rich region further towards the C terminus []. HRC may regulate sarcoplasmic reticular calcium transport, play a critical role in maintaining calcium homeostasis, and function in the heart. HRC is a candidate regulator of sarcoplasmic reticular calcium uptake.
Probab=53.11 E-value=6.1 Score=23.49 Aligned_cols=11 Identities=18% Similarity=0.253 Sum_probs=6.1
Q ss_pred CCCCCCCchhh
Q 007321 20 GGGEGGGEEEV 30 (608)
Q Consensus 20 ~~~~~~~~~~~ 30 (608)
++|++|||||+
T Consensus 4 rgH~~eeDed~ 14 (15)
T PF10529_consen 4 RGHREEEDEDD 14 (15)
T ss_pred Ccccccccccc
Confidence 45666555553
No 59
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=52.36 E-value=8.2 Score=40.74 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred hhhhhhhhhhhcCCCCCCCchhhhhhhcCcceeeeeeecCCCcccccCcC
Q 007321 8 VERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNIN 57 (608)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (608)
.+|+.+..|+.+++.|+|+|||.++.|+-++ .++-|||+-+-
T Consensus 22 ~~r~~~e~~~v~~~~edddD~d~~~eeek~~--------e~e~vnidFE~ 63 (308)
T KOG3034|consen 22 FQRDEEEEEDVEDESEDDDDEDKENEEEKEV--------EDEEVNIDFEA 63 (308)
T ss_pred hhccccccccccccccCcccccccchhhhcc--------ccceEeccccc
Confidence 4466666666666666666666666555433 23445665443
No 60
>PHA03211 serine/threonine kinase US3; Provisional
Probab=51.61 E-value=26 Score=39.35 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=4.3
Q ss_pred cchhHHHH
Q 007321 146 TNKISLFL 153 (608)
Q Consensus 146 ~d~~c~~l 153 (608)
..++|...
T Consensus 65 ~~~~~~~~ 72 (461)
T PHA03211 65 AARLCQIQ 72 (461)
T ss_pred HHHHHHHH
Confidence 35566554
No 61
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=50.77 E-value=8.3 Score=34.00 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=4.6
Q ss_pred cchhhhhhh
Q 007321 6 PVVERETQN 14 (608)
Q Consensus 6 ~~~~~~~~~ 14 (608)
|.+|+|.+.
T Consensus 48 ~lVqqe~~~ 56 (96)
T PF15387_consen 48 PLVQQEAQD 56 (96)
T ss_pred HHHHHhhcc
Confidence 345555555
No 62
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=50.75 E-value=27 Score=36.65 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=7.0
Q ss_pred eeecCCCcccc
Q 007321 43 KVVDSNSNVNI 53 (608)
Q Consensus 43 ~~~~~~~~~~~ 53 (608)
|+|||..-|..
T Consensus 114 ~lv~~~di~e~ 124 (274)
T PLN02983 114 KLVDSRDIVEL 124 (274)
T ss_pred hhhccccceee
Confidence 67777665544
No 63
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=49.92 E-value=71 Score=39.01 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=12.9
Q ss_pred hHHHHHHhcCCCCcCCCCC
Q 007321 582 KDRLSLMKAGRDVVVPTPR 600 (608)
Q Consensus 582 p~~~~~l~~~~~~~~~t~~ 600 (608)
-|+-|+||.+-+++.+..+
T Consensus 736 ReLrdRlK~gfe~kp~~~~ 754 (982)
T PF03154_consen 736 RELRDRLKPGFEVKPPELE 754 (982)
T ss_pred HHHHHhhccccccCCCCCC
Confidence 3667788888777665544
No 64
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=48.97 E-value=6.7 Score=44.48 Aligned_cols=26 Identities=35% Similarity=0.665 Sum_probs=13.7
Q ss_pred hhhhhhhhcCCCCCCCchhhhhhhcC
Q 007321 11 ETQNKEEEEGGGEGGGEEEVKDVEKG 36 (608)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (608)
|+||.+.+|+..||+|+||+|++|+.
T Consensus 412 dsen~d~~~~s~E~~~eee~e~~ee~ 437 (739)
T KOG2140|consen 412 DSENEDDEDGSSEDDDEEEDESVEED 437 (739)
T ss_pred cccccccccccccccccccccccccc
Confidence 33444445555555555555555554
No 65
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=48.46 E-value=36 Score=40.46 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=8.9
Q ss_pred ccccccCCccccCCCCCCCCCC
Q 007321 77 LRIVINGGRRVTAPRIATPPPS 98 (608)
Q Consensus 77 ~~~~~~~~~~~~~p~~~~~~~~ 98 (608)
.|+.++.-+-...|..+|+.+-
T Consensus 680 ~rg~P~~~~~~h~~~r~P~~~r 701 (759)
T PF05518_consen 680 ARGAPLRPTPHHQPLRAPQLPR 701 (759)
T ss_pred ccCCCCCccccccCCCCCCCCC
Confidence 3444444333334433333333
No 66
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=48.26 E-value=6 Score=42.64 Aligned_cols=6 Identities=67% Similarity=0.661 Sum_probs=0.0
Q ss_pred hhhhhc
Q 007321 30 VKDVEK 35 (608)
Q Consensus 30 ~~~~~~ 35 (608)
|--|||
T Consensus 246 VVTVEk 251 (329)
T PF01056_consen 246 VVTVEK 251 (329)
T ss_dssp ------
T ss_pred EEEeee
Confidence 334444
No 67
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=47.44 E-value=13 Score=48.03 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=4.5
Q ss_pred cceEEEEee
Q 007321 353 CRVISLYYI 361 (608)
Q Consensus 353 Agvva~WYF 361 (608)
.|+.++||-
T Consensus 1602 vG~YaTWy~ 1610 (1806)
T PRK14849 1602 AGLYATWYQ 1610 (1806)
T ss_pred EEEEEEEEc
Confidence 345555554
No 68
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=47.19 E-value=13 Score=47.33 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=8.3
Q ss_pred hhhhHHHHHhhcCCchh
Q 007321 431 GNGWAYVQIAAYGKGFV 447 (608)
Q Consensus 431 iNk~AyI~iAI~G~~F~ 447 (608)
+|+--|--+.|.-+..-
T Consensus 636 ~nk~~~~niem~p~~lk 652 (2849)
T PTZ00415 636 INKAKYANIEIFPKMLK 652 (2849)
T ss_pred cccccccChhccchhhh
Confidence 45555555555544433
No 69
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=46.77 E-value=14 Score=41.72 Aligned_cols=17 Identities=6% Similarity=-0.067 Sum_probs=8.9
Q ss_pred cCCchhHhHHHHHHHHH
Q 007321 442 YGKGFVQASQDTWALFE 458 (608)
Q Consensus 442 ~G~~F~~SAk~a~~Ll~ 458 (608)
-+++-|.-+|.....+.
T Consensus 375 ESCGqCtPCReGt~~l~ 391 (461)
T PLN03132 375 ESCGQCTPCREGTGWLW 391 (461)
T ss_pred cCCCCCCChhhHHHHHH
Confidence 45556666655544443
No 70
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=46.65 E-value=7.7 Score=31.54 Aligned_cols=20 Identities=45% Similarity=0.697 Sum_probs=10.4
Q ss_pred hhhhcCCCCCCCchhhhhhhcCc
Q 007321 15 KEEEEGGGEGGGEEEVKDVEKGE 37 (608)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~ 37 (608)
+|.+|.|+|+|||+ +-|||.
T Consensus 6 kesgdad~e~d~e~---ese~ga 25 (71)
T PF15451_consen 6 KESGDADGEADEEE---ESEKGA 25 (71)
T ss_pred cccccccccccccc---ccccCC
Confidence 45556566655433 345553
No 71
>PTZ00438 gamete antigen 27/25-like protein; Provisional
Probab=46.27 E-value=9 Score=39.84 Aligned_cols=30 Identities=53% Similarity=0.620 Sum_probs=14.9
Q ss_pred hhhhhhhhhhcCCCCCCCchhhhhhhcCcceeeee
Q 007321 9 ERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEK 43 (608)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (608)
||-+|++|++ |+|-||.++||+-|+|-||-
T Consensus 102 ergtq~~e~e-----~~~ve~i~eveevevveeey 131 (374)
T PTZ00438 102 ERGTQKEEEE-----DEDVEEIEEVEEVEVVEEEY 131 (374)
T ss_pred hcCccchhhh-----hhhhhhhhhhhhhhhhhhhc
Confidence 3444444444 44445555666655544443
No 72
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=46.17 E-value=44 Score=41.13 Aligned_cols=6 Identities=33% Similarity=1.010 Sum_probs=2.3
Q ss_pred HHHHch
Q 007321 215 AVRVWP 220 (608)
Q Consensus 215 LLR~~~ 220 (608)
.|+-+|
T Consensus 183 AL~~~P 188 (1228)
T PRK12270 183 ALKAFP 188 (1228)
T ss_pred HHHhCc
Confidence 333333
No 73
>KOG4090 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.96 E-value=46 Score=32.05 Aligned_cols=8 Identities=25% Similarity=0.430 Sum_probs=4.0
Q ss_pred CccccCCC
Q 007321 84 GRRVTAPR 91 (608)
Q Consensus 84 ~~~~~~p~ 91 (608)
++|...|+
T Consensus 4 ~s~s~~s~ 11 (157)
T KOG4090|consen 4 GSRSARSS 11 (157)
T ss_pred CCCCCCCC
Confidence 34555554
No 74
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=45.44 E-value=5.4 Score=45.60 Aligned_cols=10 Identities=30% Similarity=0.258 Sum_probs=3.3
Q ss_pred cccccccccc
Q 007321 136 SRTALNSKKY 145 (608)
Q Consensus 136 ~~~~y~s~k~ 145 (608)
+.-.+.|.|.
T Consensus 557 p~i~l~S~KM 566 (618)
T PF05053_consen 557 PVITLYSQKM 566 (618)
T ss_dssp -CCC--SHHH
T ss_pred ceEEeehHHH
Confidence 3344555554
No 75
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.39 E-value=64 Score=37.89 Aligned_cols=7 Identities=71% Similarity=1.241 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 007321 94 TPPPSQP 100 (608)
Q Consensus 94 ~~~~~~~ 100 (608)
+++.+++
T Consensus 537 ~~~~~~~ 543 (620)
T PRK14948 537 TPPLPQP 543 (620)
T ss_pred CCCcCCC
Confidence 3333333
No 76
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=44.35 E-value=24 Score=43.90 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCcc--ccccccccccc
Q 007321 121 ISTSPPAPTPTPQQ--ASRTALNSKKY 145 (608)
Q Consensus 121 ~~~~~~~~~~~~~~--~~~~~y~s~k~ 145 (608)
+.+||..|+||.|| +-..+|+.+..
T Consensus 1899 ~~pqp~gpqPp~~p~p~l~~v~~~rrg 1925 (1958)
T KOG0391|consen 1899 AQPQPQGPQPPQQPSPQLTTVTAPRRG 1925 (1958)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCCCC
Confidence 44455444444332 23345655543
No 77
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.00 E-value=13 Score=40.90 Aligned_cols=28 Identities=32% Similarity=0.165 Sum_probs=14.3
Q ss_pred hhhhhhhcCcceeeeeeecCCCcccccC
Q 007321 28 EEVKDVEKGEVVVEEKVVDSNSNVNINN 55 (608)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (608)
||-+|-.-|+---|+-+|+.|+--.|+-
T Consensus 285 eeN~ddd~~d~d~e~~~v~dN~~p~i~f 312 (514)
T KOG3130|consen 285 EENIDDDDGDNDHEALGVGDNSIPTIYF 312 (514)
T ss_pred hhcccccccccchhhhccCCCcCccccc
Confidence 3333333344444566777776655543
No 78
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=42.63 E-value=67 Score=35.92 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=3.1
Q ss_pred ccccccc
Q 007321 139 ALNSKKY 145 (608)
Q Consensus 139 ~y~s~k~ 145 (608)
.++-+||
T Consensus 328 ELeGkkW 334 (480)
T KOG2675|consen 328 ELEGKKW 334 (480)
T ss_pred eeccceE
Confidence 3344444
No 79
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=42.20 E-value=38 Score=32.35 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=2.7
Q ss_pred cCCCCCc
Q 007321 71 LNPTNPL 77 (608)
Q Consensus 71 ~~~~~~~ 77 (608)
.++.|..
T Consensus 101 tt~in~v 107 (155)
T PF10873_consen 101 TTHINAV 107 (155)
T ss_pred ccccccc
Confidence 3334433
No 80
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=42.00 E-value=1.2e+02 Score=28.55 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.3
Q ss_pred hhHHHHHhhcCCchhHhHHHHHHHHHhcCchhh
Q 007321 433 GWAYVQIAAYGKGFVQASQDTWALFERQEMEPI 465 (608)
Q Consensus 433 k~AyI~iAI~G~~F~~SAk~a~~Ll~rn~~~al 465 (608)
-++.-.+.+.++++.+|-|++|+|.++|.++.+
T Consensus 104 if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~ 136 (149)
T PF10110_consen 104 IFVLPLIVLENKSFKEALKESWQLTKGRFWRIL 136 (149)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHH
Confidence 457778889999999999999999999877643
No 81
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=41.80 E-value=46 Score=36.37 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCc
Q 007321 121 ISTSPPAPTPTPQ 133 (608)
Q Consensus 121 ~~~~~~~~~~~~~ 133 (608)
+-.+++.||+++|
T Consensus 206 a~k~~v~~~~~~p 218 (457)
T KOG0559|consen 206 AKKPSVAQPKPPP 218 (457)
T ss_pred ccCccccCCCCCc
Confidence 4455555544444
No 82
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.40 E-value=8.8 Score=40.43 Aligned_cols=28 Identities=7% Similarity=-0.168 Sum_probs=0.0
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007321 190 VLKYLLPQVEAASLLSISLSFSWQKAVR 217 (608)
Q Consensus 190 dl~~~~~~i~~~~~is~vls~~wl~LLR 217 (608)
|+..+-..++.+.++-+++-.+.++++|
T Consensus 46 d~t~~a~~vl~sfAvvliiIIiIImlF~ 73 (381)
T PF05297_consen 46 DLTQGALTVLYSFAVVLIIIIIIIMLFK 73 (381)
T ss_dssp ----------------------------
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455444444444444444
No 83
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=39.98 E-value=19 Score=35.60 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=4.2
Q ss_pred CCCCCCCCCCc
Q 007321 123 TSPPAPTPTPQ 133 (608)
Q Consensus 123 ~~~~~~~~~~~ 133 (608)
++|-.-||+.|
T Consensus 118 prpelgpptnp 128 (300)
T PF05750_consen 118 PRPELGPPTNP 128 (300)
T ss_pred CCcccCCCCCh
Confidence 33333334333
No 84
>KOG2418 consensus Microtubule-associated protein TAU [Cytoskeleton]
Probab=39.51 E-value=85 Score=34.31 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=3.0
Q ss_pred cCCcccc
Q 007321 82 NGGRRVT 88 (608)
Q Consensus 82 ~~~~~~~ 88 (608)
|.|.|+-
T Consensus 180 ~~g~r~e 186 (448)
T KOG2418|consen 180 NEGERVE 186 (448)
T ss_pred Ccccccc
Confidence 3444443
No 85
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=39.15 E-value=13 Score=37.69 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=7.6
Q ss_pred cCCCCCCCchhhhhhhcCc
Q 007321 19 EGGGEGGGEEEVKDVEKGE 37 (608)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (608)
..+.|+|+||++.+.+-||
T Consensus 185 ~d~~EeeeDee~~~~~~gE 203 (279)
T COG5137 185 SDGREEEEDEEVGSDSYGE 203 (279)
T ss_pred hccchhhhhhccccccccc
Confidence 3333444444443333343
No 86
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.04 E-value=39 Score=39.17 Aligned_cols=20 Identities=25% Similarity=0.445 Sum_probs=13.5
Q ss_pred CCccccccCCccccCCCCCC
Q 007321 75 NPLRIVINGGRRVTAPRIAT 94 (608)
Q Consensus 75 ~~~~~~~~~~~~~~~p~~~~ 94 (608)
.++||-+-.|+-.+.||++-
T Consensus 99 g~~~~k~~~~~ws~~pPmas 118 (728)
T KOG4592|consen 99 GSNRIKLDSGVWSSQPPMAS 118 (728)
T ss_pred CCCCccccccccccCCCccc
Confidence 36677777777777776543
No 87
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=38.92 E-value=43 Score=37.96 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 007321 97 PSQPSRQAPRIATPPPSQP 115 (608)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ 115 (608)
.|.+.+.-+|.+||||--|
T Consensus 239 ~P~~~~L~~GvPPPPP~G~ 257 (817)
T KOG1925|consen 239 LPTRDFLLSGVPPPPPKGP 257 (817)
T ss_pred cCCchhhhcCCCCCCCCCC
Confidence 3455566666666665433
No 88
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=38.84 E-value=82 Score=34.32 Aligned_cols=19 Identities=37% Similarity=0.721 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 007321 94 TPPPSQPSRQAPRIATPPP 112 (608)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~ 112 (608)
+|++++.-+.+.|.+++||
T Consensus 321 pppPPv~r~~sar~~P~pP 339 (437)
T KOG4462|consen 321 PPPPPVSRTGSARDAPAPP 339 (437)
T ss_pred CCCCccccccccccCCCCC
Confidence 4444444444455555554
No 89
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=41 Score=36.24 Aligned_cols=11 Identities=27% Similarity=0.440 Sum_probs=5.0
Q ss_pred CCCCCCCCccc
Q 007321 125 PPAPTPTPQQA 135 (608)
Q Consensus 125 ~~~~~~~~~~~ 135 (608)
||.|.|.+.-+
T Consensus 53 ~~~~~~~~~gk 63 (362)
T KOG1546|consen 53 PPYQYPQMAGK 63 (362)
T ss_pred CCCCCcccccc
Confidence 44444444433
No 90
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.40 E-value=15 Score=41.29 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=3.9
Q ss_pred hHHHHHHHH
Q 007321 149 ISLFLFVLH 157 (608)
Q Consensus 149 ~c~~lF~~~ 157 (608)
||...|+..
T Consensus 424 fF~vTFigS 432 (588)
T KOG1307|consen 424 FFPVTFIGS 432 (588)
T ss_pred eeehHHHHH
Confidence 344444443
No 91
>PHA03378 EBNA-3B; Provisional
Probab=38.09 E-value=1e+02 Score=36.38 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=11.0
Q ss_pred ccccCcCCCCCCCccccc
Q 007321 51 VNINNINGEQRGFNASMM 68 (608)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~ 68 (608)
+.|.|++-++..-+++-|
T Consensus 667 ~~~~hi~~~p~~~~~~~~ 684 (991)
T PHA03378 667 TQIGHIPYQPSPTGANTM 684 (991)
T ss_pred cccCCcCCCCCCCCcccc
Confidence 456677777666555444
No 92
>PF15345 TMEM51: Transmembrane protein 51
Probab=38.07 E-value=78 Score=32.58 Aligned_cols=11 Identities=45% Similarity=0.435 Sum_probs=5.5
Q ss_pred ceeeeeeecCC
Q 007321 38 VVVEEKVVDSN 48 (608)
Q Consensus 38 ~~~~~~~~~~~ 48 (608)
+--.|.||.++
T Consensus 124 vPSYEEvv~s~ 134 (233)
T PF15345_consen 124 VPSYEEVVNSG 134 (233)
T ss_pred CCChHHHHhcC
Confidence 33445555554
No 93
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.27 E-value=11 Score=42.21 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=3.4
Q ss_pred cccccch
Q 007321 142 SKKYTNK 148 (608)
Q Consensus 142 s~k~~d~ 148 (608)
++|++-.
T Consensus 421 ~rkfF~v 427 (588)
T KOG1307|consen 421 SRKFFPV 427 (588)
T ss_pred ccceeeh
Confidence 4555443
No 94
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=37.24 E-value=19 Score=42.18 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.0
Q ss_pred cccccccc
Q 007321 140 LNSKKYTN 147 (608)
Q Consensus 140 y~s~k~~d 147 (608)
|+..-|+-
T Consensus 209 Y~~gs~~g 216 (622)
T PF02724_consen 209 YSQGSYYG 216 (622)
T ss_pred HhcCceec
Confidence 33333333
No 95
>PHA03282 envelope glycoprotein E; Provisional
Probab=37.05 E-value=66 Score=36.29 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=24.4
Q ss_pred cceeeeeeecCCCcccccCcCCCCCCCcc-ccccccCCCCCcccc
Q 007321 37 EVVVEEKVVDSNSNVNINNINGEQRGFNA-SMMQTLNPTNPLRIV 80 (608)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (608)
|.+..+.|--.|..+-|.+...+..|... ++...-|++.-.+++
T Consensus 112 e~~~~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v 156 (540)
T PHA03282 112 EFAWPPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVV 156 (540)
T ss_pred ccccCcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEE
Confidence 44455555555666777776666666543 233444555555544
No 96
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=36.88 E-value=11 Score=41.09 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=0.0
Q ss_pred CCCCccccccccCCCCCc
Q 007321 60 QRGFNASMMQTLNPTNPL 77 (608)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~ 77 (608)
|+.|+++ +=+-||..+.
T Consensus 3 pdaFsa~-lFkWdpr~~~ 19 (386)
T PF01698_consen 3 PDAFSAS-LFKWDPRAAA 19 (386)
T ss_dssp ------------------
T ss_pred cccCCcc-ccCcCCCCCC
Confidence 4556666 4445554443
No 97
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=35.42 E-value=14 Score=40.01 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=7.9
Q ss_pred hhhhhhhhhhhc
Q 007321 8 VERETQNKEEEE 19 (608)
Q Consensus 8 ~~~~~~~~~~~~ 19 (608)
.||-.|||||..
T Consensus 260 ~~Ra~~kR~~~~ 271 (340)
T PF12794_consen 260 YERAKEKRAEAL 271 (340)
T ss_pred HHHHHHHHHHHH
Confidence 367777777754
No 98
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=35.23 E-value=16 Score=37.35 Aligned_cols=6 Identities=50% Similarity=0.706 Sum_probs=3.5
Q ss_pred hhhcCc
Q 007321 32 DVEKGE 37 (608)
Q Consensus 32 ~~~~~~ 37 (608)
+|.+|+
T Consensus 147 ~~~~~~ 152 (286)
T KOG4451|consen 147 SVAMGE 152 (286)
T ss_pred HHHHHH
Confidence 556664
No 99
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.15 E-value=28 Score=43.25 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhhhhhhhcCCCCCCCchhhhhhhcCcceeeeeeecCCCcccccCcCCCCCCCccccccccCCCCCccccccCCccccCC
Q 007321 11 ETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAP 90 (608)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 90 (608)
+-+...+++.|.|||||||++|-|.-+.-.|+.--|....-.-+|+.||+-.-.-..-. ||+.+ -+++-
T Consensus 1740 dnddddddd~EaEdddDddDdDdeD~d~~aea~aEdEe~eEgdeheQDeqvegeia~~d--------RieVq---~atae 1808 (3015)
T KOG0943|consen 1740 DNDDDDDDDAEAEDDDDDDDDDDEDMDLDAEAAAEDEEDEEGDEHEQDEQVEGEIASGD--------RIEVQ---AATAE 1808 (3015)
T ss_pred ccccccccchhhccccccccccccccccchhhhhccccccccccccccccccccccccc--------eeEEe---ecccc
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 007321 91 RIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQ 133 (608)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (608)
. -+++.|- |..+.|--|.|-+|
T Consensus 1809 S-------------E~aaepV--------~~afe~adpqp~dp 1830 (3015)
T KOG0943|consen 1809 S-------------EAAAEPV--------PAAFEEADPQPNDP 1830 (3015)
T ss_pred c-------------ccccCCc--------ccccCcCCCCCCCC
No 100
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=34.82 E-value=26 Score=33.40 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=12.3
Q ss_pred ccccccccchhHHHHHHHHH
Q 007321 139 ALNSKKYTNKISLFLFVLHM 158 (608)
Q Consensus 139 ~y~s~k~~d~~c~~lF~~~l 158 (608)
++--+|+.+.=+-+.|+.|-
T Consensus 139 ILfCkKC~tLHs~payVaHc 158 (173)
T PF15470_consen 139 ILFCKKCRTLHSHPAYVAHC 158 (173)
T ss_pred eeeehhhccccCchHHHHHH
Confidence 44556666655667777664
No 101
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=34.73 E-value=16 Score=39.84 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=0.0
Q ss_pred hcCcceeeeeeecCCCcc
Q 007321 34 EKGEVVVEEKVVDSNSNV 51 (608)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~ 51 (608)
+.++..++|..-||...+
T Consensus 302 ~~~~~~~~~~~~~~~dd~ 319 (375)
T PF03153_consen 302 EDDEDAINSDLDDSDDDV 319 (375)
T ss_dssp ------------------
T ss_pred ccccccccCCcCCccccc
Confidence 333444555555554444
No 102
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=34.20 E-value=4.3e+02 Score=31.86 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHchhh
Q 007321 206 ISLSFSWQKAVRVWPKF 222 (608)
Q Consensus 206 ~vls~~wl~LLR~~~r~ 222 (608)
++-+++|-.+...+-|.
T Consensus 216 iiG~li~G~LsDR~GRR 232 (742)
T TIGR01299 216 MVGAFFWGGLADKLGRK 232 (742)
T ss_pred HHHHHHHHHHHHHhCcH
Confidence 34444555555555444
No 103
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=33.65 E-value=18 Score=34.33 Aligned_cols=25 Identities=8% Similarity=-0.058 Sum_probs=12.3
Q ss_pred CCCCCccccccccccccccchhHHHH
Q 007321 128 PTPTPQQASRTALNSKKYTNKISLFL 153 (608)
Q Consensus 128 ~~~~~~~~~~~~y~s~k~~d~~c~~l 153 (608)
|-...||+.+.+-....|.. |+.|+
T Consensus 75 QEsStqqValLRRadsgFWg-wlsPf 99 (173)
T PF15470_consen 75 QESSTQQVALLRRADSGFWG-WLSPF 99 (173)
T ss_pred ccchhhHHHHhhcccCCchh-hhcHH
Confidence 33455566655555544444 34443
No 104
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.53 E-value=1.1e+02 Score=36.12 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=17.0
Q ss_pred cCcCCCCCCCccccccccCCCCCccccccCCccccC
Q 007321 54 NNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTA 89 (608)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (608)
||++++.+....+.-++--|-++.-....+..-|++
T Consensus 376 dn~~~~~~~~~~~s~~~gpp~p~~amm~~~~~tV~s 411 (948)
T KOG0577|consen 376 DNEEEEEESEEEESEEEGPPAPEMAMMMEGEHTVTS 411 (948)
T ss_pred ccccccCCCcccchhhcCCCCchhhhhccCCCcccc
Confidence 445555555545554544444444444444444443
No 105
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=33.41 E-value=3.7e+02 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 007321 252 GVGVCFIAFAIGNGLYACWVSQRIGFC 278 (608)
Q Consensus 252 ~~~i~~~i~aii~~ly~~~~r~RI~~a 278 (608)
..+++.++|+..+ .|..++|+||+.-
T Consensus 78 ~m~vvG~iF~~~W-~~~l~lg~~i~~~ 103 (107)
T PF14017_consen 78 AMFVVGVIFAAVW-WYALYLGRRIDRR 103 (107)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4667778888777 6777788888754
No 106
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=33.39 E-value=58 Score=36.28 Aligned_cols=8 Identities=50% Similarity=0.725 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 007321 111 PPSQPSRP 118 (608)
Q Consensus 111 ~~~~~~~~ 118 (608)
+|++||++
T Consensus 177 l~~~Ppaq 184 (523)
T KOG3837|consen 177 LPSQPPAQ 184 (523)
T ss_pred CCCCCCCC
Confidence 33334333
No 107
>PF15195 TMEM210: TMEM210 family
Probab=33.10 E-value=33 Score=30.50 Aligned_cols=11 Identities=36% Similarity=0.567 Sum_probs=6.0
Q ss_pred CCccccccccC
Q 007321 62 GFNASMMQTLN 72 (608)
Q Consensus 62 ~~~~~~~~~~~ 72 (608)
...+|||+.+.
T Consensus 81 DleVsmm~~Le 91 (116)
T PF15195_consen 81 DLEVSMMPPLE 91 (116)
T ss_pred CccccccCccc
Confidence 45566666443
No 108
>PRK10649 hypothetical protein; Provisional
Probab=32.69 E-value=1.9e+02 Score=33.69 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHchhhhHHHHHHH
Q 007321 204 LSISLSFSWQKAVRVWPKFMVHFILWS 230 (608)
Q Consensus 204 is~vls~~wl~LLR~~~r~li~~~vw~ 230 (608)
=+++++++|+..+-.+|+..-.+..++
T Consensus 48 ~~~~~~~~~~~~~~l~p~~~~~~~~~~ 74 (577)
T PRK10649 48 DALLFSSLWLIPVFLFPRRIRIIAAVI 74 (577)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 355667788777777777644333333
No 109
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=32.10 E-value=18 Score=39.34 Aligned_cols=34 Identities=26% Similarity=0.503 Sum_probs=20.2
Q ss_pred CCCcccccCcCCCCCCCccccccccCCCCCccccccCCccc
Q 007321 47 SNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRV 87 (608)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (608)
.+|-+....|.++- |. -.++|+|+| .+|-++--.
T Consensus 54 DdS~~tF~~H~~sv--Fa----vsl~P~~~l-~aTGGgDD~ 87 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSV--FA----VSLHPNNNL-VATGGGDDL 87 (399)
T ss_pred ccceeehhhcCCce--EE----EEeCCCCce-EEecCCCce
Confidence 45556666555432 22 358899999 666655443
No 110
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=32.03 E-value=20 Score=40.11 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=8.9
Q ss_pred CCCCCchhhhhhhcCc
Q 007321 22 GEGGGEEEVKDVEKGE 37 (608)
Q Consensus 22 ~~~~~~~~~~~~~~~~ 37 (608)
.|+++|+|++|+|+|+
T Consensus 330 ~~~~~~~~~~~~e~~~ 345 (429)
T PF03348_consen 330 NEDRDQADRADVEEGS 345 (429)
T ss_pred ccccccccccchhccc
Confidence 4445555555666664
No 111
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=30.80 E-value=20 Score=36.83 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=4.1
Q ss_pred hhhhhhcCCCC
Q 007321 13 QNKEEEEGGGE 23 (608)
Q Consensus 13 ~~~~~~~~~~~ 23 (608)
|..||.|.|.|
T Consensus 60 ~~~~~~~~~~~ 70 (232)
T PRK12766 60 EVSEETEAEVE 70 (232)
T ss_pred cccccccchhc
Confidence 33333333333
No 112
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=30.56 E-value=40 Score=36.66 Aligned_cols=7 Identities=57% Similarity=1.246 Sum_probs=2.9
Q ss_pred CCCCCCC
Q 007321 122 STSPPAP 128 (608)
Q Consensus 122 ~~~~~~~ 128 (608)
.+.||-|
T Consensus 54 ~~~~~~~ 60 (377)
T KOG1945|consen 54 SQCPPSP 60 (377)
T ss_pred ccCCCcc
Confidence 4444433
No 113
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.36 E-value=3.3e+02 Score=27.83 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=13.5
Q ss_pred ccccccccccccchhHHHH
Q 007321 135 ASRTALNSKKYTNKISLFL 153 (608)
Q Consensus 135 ~~~~~y~s~k~~d~~c~~l 153 (608)
...|--+..|..-.+|+++
T Consensus 118 k~~CEen~~K~amLIClII 136 (227)
T PF05399_consen 118 KEICEENNNKMAMLICLII 136 (227)
T ss_pred hhhhhcCccchhHHHHHHH
Confidence 5666667778877788774
No 114
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.30 E-value=13 Score=39.10 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=20.1
Q ss_pred hhhhhhhhhhhcCCCCCCCchhhhhhhcC
Q 007321 8 VERETQNKEEEEGGGEGGGEEEVKDVEKG 36 (608)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (608)
-|+|++|||||=.--|+|=|+-+++..+.
T Consensus 65 kq~eL~~rqeEL~Rke~ELdRREr~~a~~ 93 (313)
T KOG3088|consen 65 KQAELLKKQEELRRKEQELDRRERALARA 93 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 46788888888777776666655555554
No 115
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.29 E-value=1.4e+02 Score=35.19 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=7.3
Q ss_pred HHHHHhhchhhHHhhh
Q 007321 372 FQRALTQNLGSACLGS 387 (608)
Q Consensus 372 ~~ra~tyhfGSIcfGS 387 (608)
-.|.----|||.-..-
T Consensus 544 a~~eq~lKlGstny~d 559 (922)
T KOG2677|consen 544 AEREQVLKLGSTNYDD 559 (922)
T ss_pred hhhhhhhhccCCcHHH
Confidence 3344344456554443
No 116
>PF05858 BIV_Env: Bovine immunodeficiency virus surface protein (SU); InterPro: IPR008411 (Bovine immunodeficiency virus) (BIV), like the human immunodeficiency virus, is a lentivirus. It shows a great deal of genomic diversity, mostly in the viral envelope gene []. This property of the BIV group of viruses may play an important role in the pathobiology of the virus, particularly the conserved (C) 2, hypervariable (V) 1, V2 and C3 regions []. The surface protein (SU) attaches the virus to the host cell by binding to its receptor. This interaction triggers the refolding of the transmembrane protein (TM) and is thought to activate its fusogenic potential by unmasking its fusion peptide. Fusion occurs at the host cell plasma membrane. The transmembrane protein (TM) acts as a class I viral fusion protein. Under the current model, the protein has at least 3 conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes. Membranes fusion leads to delivery of the nucleocapsid into the cytoplasm. ; GO: 0016021 integral to membrane, 0030120 vesicle coat
Probab=30.06 E-value=15 Score=40.49 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=23.6
Q ss_pred hhhhhhhhhcCCCCCCCch--hhhhhhcCcceeeee
Q 007321 10 RETQNKEEEEGGGEGGGEE--EVKDVEKGEVVVEEK 43 (608)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 43 (608)
.|+.|+|++|+++|.||-+ -|||++||..--.|.
T Consensus 3 qdl~r~ErgE~~G~s~elr~LlQe~i~~grLT~rEa 38 (548)
T PF05858_consen 3 QDLDRVERGEGEGRSEELRDLLQEDIDKGRLTAREA 38 (548)
T ss_pred ccccccccccccCCcchHHHHHHHHhhcCcccHHHH
Confidence 4667788887777766644 489999996544443
No 117
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=29.86 E-value=85 Score=30.95 Aligned_cols=11 Identities=45% Similarity=0.540 Sum_probs=6.6
Q ss_pred CCcchhhhhhhh
Q 007321 4 SDPVVERETQNK 15 (608)
Q Consensus 4 ~~~~~~~~~~~~ 15 (608)
+||.+ |.++++
T Consensus 17 ~DPEl-R~t~nG 27 (175)
T PRK13732 17 KDPEV-RYIPNG 27 (175)
T ss_pred CCCEE-EEcCCC
Confidence 46666 666654
No 118
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=29.04 E-value=85 Score=33.06 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=6.1
Q ss_pred ceeeeeeecCCCcccc
Q 007321 38 VVVEEKVVDSNSNVNI 53 (608)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (608)
.+||-+.-..+-.+-|
T Consensus 120 di~e~~lk~~~~e~~i 135 (274)
T PLN02983 120 DIVELQLKQLDCELVI 135 (274)
T ss_pred cceeeeccccceEEEE
Confidence 3444443333333333
No 119
>PHA03356 tegument protein UL11; Provisional
Probab=28.77 E-value=87 Score=27.18 Aligned_cols=7 Identities=43% Similarity=0.705 Sum_probs=5.2
Q ss_pred Ccccccc
Q 007321 76 PLRIVIN 82 (608)
Q Consensus 76 ~~~~~~~ 82 (608)
-||||++
T Consensus 51 elrvVTq 57 (93)
T PHA03356 51 ELRVVTQ 57 (93)
T ss_pred cceEEec
Confidence 3688887
No 120
>TIGR01363 strep_his_triad streptococcal histidine triad protein. This model represents the N-terminal half of a family of Streptococcal proteins that contain a signal peptide and then up to five repeats of a region that includes a His-X-X-His-X-His (histidine triad) motif. Three repeats are found in the seed alignment. Members of this family from Streptococcus pneumoniae are suggested to cleave human C3, and the member PhpA has been shown in vaccine studies to be a protective antigen in mice.
Probab=28.70 E-value=42 Score=35.87 Aligned_cols=13 Identities=15% Similarity=0.343 Sum_probs=5.3
Q ss_pred hhhhhhhhhcCCC
Q 007321 10 RETQNKEEEEGGG 22 (608)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (608)
|..|.-++|++++
T Consensus 147 rt~~ei~~qk~~~ 159 (348)
T TIGR01363 147 RTKEEIARQKQEG 159 (348)
T ss_pred ccHHHHHHHHhhc
Confidence 4434333444433
No 121
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=28.39 E-value=26 Score=37.36 Aligned_cols=30 Identities=40% Similarity=0.633 Sum_probs=19.7
Q ss_pred chhhhhhhhhhhcCCC---------CCCCchhhhhhhcCc
Q 007321 7 VVERETQNKEEEEGGG---------EGGGEEEVKDVEKGE 37 (608)
Q Consensus 7 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 37 (608)
-+.|--|+ ||+|+++ +|.||+++||+..+|
T Consensus 71 ~lkr~~q~-e~eddgg~~gi~sgp~~~gd~~~~edla~~E 109 (383)
T KOG4317|consen 71 ELKRKMQK-EEEDDGGWSGIESGPPLDGDDEEQEDLADWE 109 (383)
T ss_pred HHHHHHhh-hhccCCcccccccCCCCCCchHhHHhcCchh
Confidence 45555566 4444333 467889999998885
No 122
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=27.03 E-value=34 Score=36.91 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=4.1
Q ss_pred eeeeeecCCC
Q 007321 40 VEEKVVDSNS 49 (608)
Q Consensus 40 ~~~~~~~~~~ 49 (608)
+||.-.+|..
T Consensus 289 ~Eeeplnsed 298 (348)
T KOG2652|consen 289 VEEEPLNSED 298 (348)
T ss_pred cccccccCcc
Confidence 3444444433
No 123
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.79 E-value=1.4e+02 Score=36.10 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred cCcCCCCCCCccccccccCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 007321 54 NNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQ 133 (608)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (608)
+....+-.....++-+..+++|.. +.+|+=.-..+|+ |.+..|. |||+|+.-+++.+++|++|+|-++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~Sy~~~~~p~--p~~~~q~---------~~~~p~~~~~~~~~~~~~~~~~~~ 127 (887)
T KOG1985|consen 60 PQIQQQIPPATPSMEGNLQLPNAP-VGPPSYQQLQAPT--PAQQQQQ---------PPPPPQVGSQPPQMGPPAPPPMNA 127 (887)
T ss_pred cccCCCCCCcccccCcCCCCCCCC-CCCcchhhccCCC--CcccCCC---------CCCCCccCCCCCCCCCCCCCcccc
Q ss_pred cccccccc
Q 007321 134 QASRTALN 141 (608)
Q Consensus 134 ~~~~~~y~ 141 (608)
-++...++
T Consensus 128 ~~~~~l~~ 135 (887)
T KOG1985|consen 128 LQPVDLPN 135 (887)
T ss_pred cCcccccc
No 124
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=26.45 E-value=1.3e+02 Score=34.10 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=3.9
Q ss_pred Cchhhhhhhc
Q 007321 26 GEEEVKDVEK 35 (608)
Q Consensus 26 ~~~~~~~~~~ 35 (608)
++.++|..||
T Consensus 209 eq~~~e~~eh 218 (484)
T KOG3655|consen 209 ERREREEEEH 218 (484)
T ss_pred HHHHHHHhhc
Confidence 3334443333
No 125
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.43 E-value=26 Score=40.78 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=14.2
Q ss_pred HHHhhcccCCCccccccchHHHHH
Q 007321 564 YYVCYAQNPDNRLFDSTIKDRLSL 587 (608)
Q Consensus 564 ifvCfaeDpe~~~~~~~~p~~~~~ 587 (608)
.+--+|+||| +-..+-+++++-
T Consensus 659 ~~~~~a~~p~--~s~~sa~~L~~~ 680 (704)
T KOG2153|consen 659 ATGEGALPPE--LSNLSAAELFEQ 680 (704)
T ss_pred ccCcCCCCcc--ccCchHHHHhhh
Confidence 3446788888 356666676664
No 126
>COG5386 Cell surface protein [Cell envelope biogenesis, outer membrane]
Probab=26.09 E-value=59 Score=34.92 Aligned_cols=6 Identities=17% Similarity=0.147 Sum_probs=3.1
Q ss_pred hhhcCc
Q 007321 32 DVEKGE 37 (608)
Q Consensus 32 ~~~~~~ 37 (608)
+||++-
T Consensus 144 ~VsdLs 149 (352)
T COG5386 144 EVSDLS 149 (352)
T ss_pred EecccC
Confidence 555553
No 127
>PHA03132 thymidine kinase; Provisional
Probab=25.52 E-value=2.3e+02 Score=33.16 Aligned_cols=8 Identities=13% Similarity=0.277 Sum_probs=3.8
Q ss_pred cHHHHHHH
Q 007321 367 STQFCFQR 374 (608)
Q Consensus 367 pv~~S~~r 374 (608)
+...+++|
T Consensus 411 ~pe~alkR 418 (580)
T PHA03132 411 NSEENLRR 418 (580)
T ss_pred CHHHHHHH
Confidence 34445554
No 128
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=25.10 E-value=42 Score=34.15 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=11.0
Q ss_pred cccccccCCCCCcccc
Q 007321 65 ASMMQTLNPTNPLRIV 80 (608)
Q Consensus 65 ~~~~~~~~~~~~~~~~ 80 (608)
--+.||.--+||.+|.
T Consensus 112 ilsvqrrgspnpfeis 127 (319)
T KOG3832|consen 112 ILSVQRRGSPNPFEIS 127 (319)
T ss_pred cceecccCCCCcceee
Confidence 3456777777888775
No 129
>PHA03419 E4 protein; Provisional
Probab=25.00 E-value=1.3e+02 Score=30.12 Aligned_cols=12 Identities=8% Similarity=-0.080 Sum_probs=8.7
Q ss_pred hhhhHHhhHHHH
Q 007321 187 EKRVLKYLLPQV 198 (608)
Q Consensus 187 ~~~dl~~~~~~i 198 (608)
+..||+.+|.-+
T Consensus 185 I~~DL~~YW~kL 196 (200)
T PHA03419 185 IVVDLRDYWQRL 196 (200)
T ss_pred HHHHHHHHHHHh
Confidence 567888888643
No 130
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.00 E-value=2.4e+02 Score=33.22 Aligned_cols=7 Identities=57% Similarity=0.795 Sum_probs=2.8
Q ss_pred cccCCCC
Q 007321 69 QTLNPTN 75 (608)
Q Consensus 69 ~~~~~~~ 75 (608)
|.+.|++
T Consensus 65 ~~~~~~~ 71 (922)
T KOG2677|consen 65 QELSPTP 71 (922)
T ss_pred cccCCCc
Confidence 3344443
No 131
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=24.94 E-value=80 Score=37.48 Aligned_cols=11 Identities=45% Similarity=0.908 Sum_probs=6.8
Q ss_pred chhHHhHHHHH
Q 007321 411 EFMFSCAHCCL 421 (608)
Q Consensus 411 ~~l~~c~~C~l 421 (608)
++..-.+.||+
T Consensus 653 EI~~VllhC~l 663 (822)
T KOG2141|consen 653 EIARVLLHCCL 663 (822)
T ss_pred HHHHHHHHHHh
Confidence 45556667765
No 132
>PHA03291 envelope glycoprotein I; Provisional
Probab=24.61 E-value=2.1e+02 Score=31.39 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred CCCCCCCccccccccCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 007321 57 NGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQAS 136 (608)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (608)
.|+-.+--++.--||||+ ++-+++..| || +--...|.-+.+.+.+-+|+++..|.|.++-|++++++.++.+
T Consensus 183 ~~~cdp~~p~~aprl~~~---~v~~P~~~~---p~--~~t~~~p~~t~~p~~~~~p~~tt~p~~~~~~~~~~~~~~~~~~ 254 (401)
T PHA03291 183 DGSCDPALPLSAPRLGPA---DVFVPATPR---PT--PRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAE 254 (401)
T ss_pred ccccCCCCCccccccCcc---ceeccCCCC---CC--cccCCCCcccCCCCCCCCCCCCCCCCCcCCCCCCCCCCccCCC
Q ss_pred cc
Q 007321 137 RT 138 (608)
Q Consensus 137 ~~ 138 (608)
..
T Consensus 255 ~t 256 (401)
T PHA03291 255 GT 256 (401)
T ss_pred CC
No 133
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=24.39 E-value=25 Score=38.53 Aligned_cols=8 Identities=13% Similarity=-0.155 Sum_probs=0.0
Q ss_pred hhhhHHhh
Q 007321 187 EKRVLKYL 194 (608)
Q Consensus 187 ~~~dl~~~ 194 (608)
++.|+.++
T Consensus 85 ELDdmM~s 92 (386)
T PF01698_consen 85 ELDDMMNS 92 (386)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44554443
No 134
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.39 E-value=85 Score=37.12 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=39.5
Q ss_pred hhhhhhhhhcCCCCCCCchhhhhhhcCcceeeeeeecCCCcccccCcCCCCCCCcccccc
Q 007321 10 RETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQ 69 (608)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (608)
||++++-..++-+||-|++.+...++|+. ..-+-|.++-.+|+.+|+.++...|-..
T Consensus 433 ~~~~~e~~~~~a~~Epeetnv~~l~d~~~---~~a~~SknD~~LdsDDd~f~pYDms~~D 489 (849)
T KOG4346|consen 433 RETANEITKDDAGEEPEETNVQRLQDNKD---SAAITSKNDLRLDSDDDDFPPYDMSESD 489 (849)
T ss_pred cccCCCccccCCCCCCcccCHHHHhcCCC---ccccccCCccccccccccCCCCCCCCcc
Confidence 67777777777777777777777777643 2345677778888888777766655544
No 135
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=24.37 E-value=1.5e+03 Score=28.51 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=8.9
Q ss_pred ceeeeeeecCCCcccc
Q 007321 38 VVVEEKVVDSNSNVNI 53 (608)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (608)
..-.-+-+|+||.-|-
T Consensus 282 ~~~~~~~~~~~~~~~~ 297 (1096)
T TIGR00927 282 TLTTPRRVESNSSTNH 297 (1096)
T ss_pred ccCCccccccCCCcCc
Confidence 3334445677776653
No 136
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=23.90 E-value=1.1e+02 Score=36.52 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=8.1
Q ss_pred hhhhhhhhhhcCCCCC
Q 007321 9 ERETQNKEEEEGGGEG 24 (608)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (608)
.||+|+.|++|++.||
T Consensus 680 ~~~le~~~~~e~~~pE 695 (907)
T KOG4167|consen 680 SEELEELEEEEEEDPE 695 (907)
T ss_pred hhHHHHHHHhhccCcc
Confidence 3555555555544433
No 137
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=23.89 E-value=57 Score=36.95 Aligned_cols=13 Identities=8% Similarity=0.122 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhh
Q 007321 392 TIEALRIVARGLN 404 (608)
Q Consensus 392 iI~~lR~il~~l~ 404 (608)
++++.|.+++...
T Consensus 361 ~v~~~~~~~~F~a 373 (461)
T PLN03132 361 VVDAIARLSYFYK 373 (461)
T ss_pred HHHHHHHHHHHHh
Confidence 5666666665544
No 138
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.83 E-value=1.2e+02 Score=33.24 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchhhhHHHHHHHHH-HHHHHHHHHHHhhccCCchhHHHH-HHHHHHHHHHH
Q 007321 196 PQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSF-FLSLSAGILLICFQKPATDGVGVC-FIAFAIGNGLY 267 (608)
Q Consensus 196 ~~i~~~~~is~vls~~wl~LLR~~~r~li~~~vw~~i-il~i~~~i~~~~~~~~~~~~~~i~-~~i~aii~~ly 267 (608)
+.+-...++-+++..+-+.|.+.||+.|=..+.++++ .++++..++ .++|+ +++|+|.+++|
T Consensus 187 ~~~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~Il----------vLaIvRlILF~I~~il~ 250 (372)
T KOG2927|consen 187 PLMWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFIL----------VLAIVRLILFGITWILT 250 (372)
T ss_pred chhHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHH----------HHHHHHHHHHHHHHHHh
No 139
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=23.76 E-value=94 Score=34.72 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=3.8
Q ss_pred CccccCCC
Q 007321 84 GRRVTAPR 91 (608)
Q Consensus 84 ~~~~~~p~ 91 (608)
++|+-=+|
T Consensus 332 n~~vs~aP 339 (483)
T KOG2546|consen 332 NKRVSFAP 339 (483)
T ss_pred cCccccCC
Confidence 45554443
No 140
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=23.56 E-value=1.6e+02 Score=30.50 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=5.4
Q ss_pred cccccCCCCC
Q 007321 67 MMQTLNPTNP 76 (608)
Q Consensus 67 ~~~~~~~~~~ 76 (608)
+.|.+.|..|
T Consensus 145 ~~~~~~p~~~ 154 (261)
T KOG3294|consen 145 YGQSAAPGPP 154 (261)
T ss_pred ccccccCCCC
Confidence 5565655443
No 141
>KOG3375 consensus Phosphoprotein/predicted coiled-coil protein [General function prediction only]
Probab=22.84 E-value=35 Score=32.64 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=4.1
Q ss_pred ccCCccccC
Q 007321 81 INGGRRVTA 89 (608)
Q Consensus 81 ~~~~~~~~~ 89 (608)
.++.+++++
T Consensus 89 ~qktkklta 97 (174)
T KOG3375|consen 89 AQKTKKLTA 97 (174)
T ss_pred HHhhhhhhh
Confidence 344455544
No 142
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=22.70 E-value=1.5e+02 Score=31.22 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=12.6
Q ss_pred hHHHHHHHHhhcccCCCc
Q 007321 558 QACVSCYYVCYAQNPDNR 575 (608)
Q Consensus 558 ~s~VdTifvCfaeDpe~~ 575 (608)
....|-+--|...||++|
T Consensus 302 ~~l~~li~~~l~~~P~~R 319 (353)
T PLN00034 302 REFRHFISCCLQREPAKR 319 (353)
T ss_pred HHHHHHHHHHccCChhhC
Confidence 345566677888999863
No 143
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.62 E-value=2.3e+02 Score=33.46 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred ccCcCCCCCCCccccccccCCCCCccccccCCccccCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC
Q 007321 53 INNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATP---PPSQPSRPRSISTSPPAPT 129 (608)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 129 (608)
+....+....-+...-..-++..+-+........-..||-.|.+.|.+...+.-++-| ||+++++|++++.++.+++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (620)
T PRK14954 373 LVRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPLPPSPQASAPR 452 (620)
T ss_pred ccCcccccCCCCCCCccccCCCCCCCCcccccccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q ss_pred CCCccc
Q 007321 130 PTPQQA 135 (608)
Q Consensus 130 ~~~~~~ 135 (608)
|..+..
T Consensus 453 ~~~~~~ 458 (620)
T PRK14954 453 NVASGK 458 (620)
T ss_pred ccccCC
No 144
>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]
Probab=22.50 E-value=1.3e+03 Score=27.22 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007321 198 VEAASLLSISLSFSWQKAVR 217 (608)
Q Consensus 198 i~~~~~is~vls~~wl~LLR 217 (608)
...+..++++++.+.++..|
T Consensus 416 ~~~~l~is~~la~l~~~~t~ 435 (605)
T KOG2399|consen 416 YLISLIISIPLAILAFFFTR 435 (605)
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 34566677777766655544
No 145
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.27 E-value=7.8e+02 Score=24.42 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 007321 255 VCFIAFAIGNGLYACWVSQRIG 276 (608)
Q Consensus 255 i~~~i~aii~~ly~~~~r~RI~ 276 (608)
++.++++++.+....|++||.+
T Consensus 181 ~~~iiig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 181 WVYIIIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444332345577754
No 146
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=22.15 E-value=2.6e+02 Score=33.27 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.3
Q ss_pred CCCCCC
Q 007321 105 PRIATP 110 (608)
Q Consensus 105 ~~~~~~ 110 (608)
+++.||
T Consensus 222 ~~~~pp 227 (944)
T KOG4307|consen 222 TRSLPP 227 (944)
T ss_pred CCCCCC
Confidence 333333
No 147
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.52 E-value=1.4e+02 Score=35.33 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=19.7
Q ss_pred HHhhhHHHHHHHHHHHhHhhhh--cCcc
Q 007321 270 WVSQRIGFCCKVLIISLQPVSK--FSDL 295 (608)
Q Consensus 270 ~~r~RI~~aiaiLk~As~~i~~--~p~L 295 (608)
++-+-++-|.++||.|-..+.+ .|.+
T Consensus 435 ~l~~dv~~A~~~L~~AD~~La~~~~P~l 462 (656)
T PRK06975 435 QLTGNVQLALIALQNADARLATSDSPQA 462 (656)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCcch
Confidence 4457788899999999888877 3544
No 148
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=21.28 E-value=1.3e+03 Score=26.82 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHchhhh
Q 007321 198 VEAASLLSISLSFSWQKAVRVWPKFM 223 (608)
Q Consensus 198 i~~~~~is~vls~~wl~LLR~~~r~l 223 (608)
+..+..+.+++++++++....+|+.+
T Consensus 45 ~~~~~~~~~~~~~~~l~~~~~~~~~~ 70 (555)
T COG2194 45 FSFSFLLALVFAFLLLLLLLSFPRLL 70 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888777754
No 149
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=20.92 E-value=2.4e+02 Score=34.81 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=9.0
Q ss_pred cccccCCCCCccccccCCcc
Q 007321 67 MMQTLNPTNPLRIVINGGRR 86 (608)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~ 86 (608)
.....+++|=|.-+..++.|
T Consensus 643 svasesgSPslA~~r~r~lR 662 (927)
T PF15402_consen 643 SVASESGSPSLASVRGRGLR 662 (927)
T ss_pred cccccCCCCccccCCCcCcc
Confidence 33344444444444444444
No 150
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.60 E-value=1.8e+02 Score=34.20 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=5.5
Q ss_pred hhHHhhHHH
Q 007321 189 RVLKYLLPQ 197 (608)
Q Consensus 189 ~dl~~~~~~ 197 (608)
.++...|.-
T Consensus 500 e~l~~~W~~ 508 (614)
T PRK14971 500 EDLQYYWQE 508 (614)
T ss_pred HHHHHHHHH
Confidence 366677753
No 151
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=20.56 E-value=96 Score=29.31 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=5.2
Q ss_pred cccccccccc
Q 007321 133 QQASRTALNS 142 (608)
Q Consensus 133 ~~~~~~~y~s 142 (608)
....+..|+.
T Consensus 45 ~~s~V~lY~~ 54 (133)
T PRK10781 45 RAAPVRLYTN 54 (133)
T ss_pred CCCceEEEcC
Confidence 3345556664
No 152
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=20.31 E-value=41 Score=38.32 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=2.7
Q ss_pred ccccCCc
Q 007321 79 IVINGGR 85 (608)
Q Consensus 79 ~~~~~~~ 85 (608)
|..++|+
T Consensus 161 i~l~hgt 167 (641)
T KOG0772|consen 161 IQLKHGT 167 (641)
T ss_pred EeccCCc
Confidence 3333333
No 153
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=20.30 E-value=1.4e+02 Score=31.15 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=5.1
Q ss_pred HHHhhhcccccc
Q 007321 166 GFLVFKGIQGLI 177 (608)
Q Consensus 166 ~fl~~~~~~~~~ 177 (608)
+.+...++.++.
T Consensus 151 G~lL~n~i~~lF 162 (247)
T PF09849_consen 151 GMLLANGIESLF 162 (247)
T ss_pred HHHHHHHHHHHh
Confidence 333444444443
Done!