Query 007321
Match_columns 608
No_of_seqs 218 out of 632
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 22:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 62.2 1.8 6.1E-05 39.6 0.3 7 124-130 129-135 (138)
2 2dvj_A V-CRK sarcoma virus CT1 51.2 17 0.00058 35.3 5.3 18 57-74 178-195 (230)
3 2h8h_A Proto-oncogene tyrosine 44.7 4.6 0.00016 44.1 -0.0 34 556-592 489-522 (535)
4 2h8h_A Proto-oncogene tyrosine 42.8 5.3 0.00018 43.6 0.1 8 585-592 494-501 (535)
5 2iu1_A EIF5, eukaryotic transl 29.6 15 0.00052 35.7 0.9 9 48-56 192-200 (208)
6 1jer_A Cucumber stellacyanin; 29.0 14 0.00047 33.7 0.5 10 125-134 125-134 (138)
7 1uff_A Intersectin 2; beta bar 28.1 43 0.0015 27.6 3.4 8 32-39 23-30 (93)
8 1uk5_A BAG-family molecular ch 26.4 40 0.0014 29.6 2.9 9 139-148 48-56 (111)
9 1pk8_A RAT synapsin I; ATP bin 23.7 17 0.00057 39.1 0.0 10 67-76 23-32 (422)
10 2dvj_A V-CRK sarcoma virus CT1 22.5 98 0.0033 29.8 5.3 7 32-38 154-160 (230)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=62.23 E-value=1.8 Score=39.60 Aligned_cols=7 Identities=43% Similarity=0.990 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 007321 124 SPPAPTP 130 (608)
Q Consensus 124 ~~~~~~~ 130 (608)
.|+||||
T Consensus 129 ~~~~~~~ 135 (138)
T 1jer_A 129 PPVMPPP 135 (138)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 3444444
No 2
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=51.17 E-value=17 Score=35.30 Aligned_cols=18 Identities=11% Similarity=0.335 Sum_probs=8.8
Q ss_pred CCCCCCCccccccccCCC
Q 007321 57 NGEQRGFNASMMQTLNPT 74 (608)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~ 74 (608)
+++.+-||.+-++.+++.
T Consensus 178 ~g~~G~~P~~yv~~~~~~ 195 (230)
T 2dvj_A 178 EGKRGMIPVPYVEKYRPA 195 (230)
T ss_dssp TSCEEEEEGGGSCCCCSS
T ss_pred CCCEEEEehHHeEEcCCC
Confidence 444444555555544443
No 3
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=44.69 E-value=4.6 Score=44.05 Aligned_cols=34 Identities=12% Similarity=0.282 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHhhcccCCCccccccchHHHHHHhcCC
Q 007321 556 LPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGR 592 (608)
Q Consensus 556 v~~s~VdTifvCfaeDpe~~~~~~~~p~~~~~l~~~~ 592 (608)
+.+...|-+--|...||++ ..+..++.+.|++..
T Consensus 489 ~~~~l~~li~~cl~~dP~~---RPt~~~l~~~L~~~~ 522 (535)
T 2h8h_A 489 CPESLHDLMCQCWRKEPEE---RPTFEYLQAFLEDYF 522 (535)
T ss_dssp CCHHHHHHHHHHTCSSGGG---SCCHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHcCCChhH---CcCHHHHHHHHHHHh
Confidence 3445667788899999995 456677777777664
No 4
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=42.84 E-value=5.3 Score=43.57 Aligned_cols=8 Identities=25% Similarity=0.015 Sum_probs=3.0
Q ss_pred HHHHhcCC
Q 007321 585 LSLMKAGR 592 (608)
Q Consensus 585 ~~~l~~~~ 592 (608)
.+.|+.-+
T Consensus 494 ~~li~~cl 501 (535)
T 2h8h_A 494 HDLMCQCW 501 (535)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 33343333
No 5
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=29.59 E-value=15 Score=35.67 Aligned_cols=9 Identities=22% Similarity=0.745 Sum_probs=0.0
Q ss_pred CCcccccCc
Q 007321 48 NSNVNINNI 56 (608)
Q Consensus 48 ~~~~~~~~~ 56 (608)
...++|+.+
T Consensus 192 ~~d~di~~~ 200 (208)
T 2iu1_A 192 DDDIDIDAI 200 (208)
T ss_dssp ---------
T ss_pred cccccHHHH
Confidence 344555543
No 6
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=29.03 E-value=14 Score=33.68 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=0.0
Q ss_pred CCCCCCCCcc
Q 007321 125 PPAPTPTPQQ 134 (608)
Q Consensus 125 ~~~~~~~~~~ 134 (608)
.++|||.+|+
T Consensus 125 ~~~~~~~~~~ 134 (138)
T 1jer_A 125 SVMPPPVMPP 134 (138)
T ss_dssp ----------
T ss_pred CCCCCCCCCC
Confidence 3444444444
No 7
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=28.11 E-value=43 Score=27.57 Aligned_cols=8 Identities=13% Similarity=0.713 Sum_probs=5.0
Q ss_pred hhhcCcce
Q 007321 32 DVEKGEVV 39 (608)
Q Consensus 32 ~~~~~~~~ 39 (608)
..++|+.+
T Consensus 23 sf~~Gd~i 30 (93)
T 1uff_A 23 SFNSGDII 30 (93)
T ss_dssp CBCTTCEE
T ss_pred CCCCCCEE
Confidence 56677654
No 8
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=26.41 E-value=40 Score=29.60 Aligned_cols=9 Identities=44% Similarity=0.693 Sum_probs=3.9
Q ss_pred ccccccccch
Q 007321 139 ALNSKKYTNK 148 (608)
Q Consensus 139 ~y~s~k~~d~ 148 (608)
.|...| .|.
T Consensus 48 ~f~g~k-~dk 56 (111)
T 1uk5_A 48 SFEGKK-TDK 56 (111)
T ss_dssp TCCSCS-SSH
T ss_pred HHcCCc-chH
Confidence 444444 443
No 9
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=23.73 E-value=17 Score=39.13 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=0.0
Q ss_pred cccccCCCCC
Q 007321 67 MMQTLNPTNP 76 (608)
Q Consensus 67 ~~~~~~~~~~ 76 (608)
|+.-++|.||
T Consensus 23 ~~~~~~~~~~ 32 (422)
T 1pk8_A 23 MTDLQRPQPP 32 (422)
T ss_dssp ----------
T ss_pred ccccCCCCCC
Confidence 3343444433
No 10
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A
Probab=22.51 E-value=98 Score=29.77 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=3.5
Q ss_pred hhhcCcc
Q 007321 32 DVEKGEV 38 (608)
Q Consensus 32 ~~~~~~~ 38 (608)
..++|+.
T Consensus 154 sf~~Gd~ 160 (230)
T 2dvj_A 154 PFKKGDI 160 (230)
T ss_dssp CCCSSCB
T ss_pred cCcCCCE
Confidence 3455644
Done!