Query 007321
Match_columns 608
No_of_seqs 218 out of 632
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 22:50:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007321.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007321hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uffa_ b.34.2.1 (A:) Intersec 38.6 9.6 0.0007 29.6 3.1 41 31-72 22-63 (93)
2 d2e9xd2 d.344.1.3 (D:166-223) 15.7 17 0.0013 26.3 0.4 17 21-37 20-37 (58)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 8.6 53 0.0038 26.1 1.1 26 440-465 3-28 (114)
4 d1kqfb2 f.23.22.1 (B:246-290) 8.3 51 0.0037 22.6 0.7 10 18-27 35-44 (45)
5 d1z3ea1 c.47.1.12 (A:1-114) Re 7.5 49 0.0036 26.3 0.5 26 439-464 2-27 (114)
6 d1nm3a1 c.47.1.1 (A:166-239) C 7.4 66 0.0048 23.1 1.1 23 441-463 9-31 (74)
7 d1vpua_ g.34.1.1 (A:) HIV-1 VP 6.9 33 0.0024 23.5 -0.8 29 8-36 7-35 (45)
8 d1r7ha_ c.47.1.1 (A:) Glutared 6.6 86 0.0063 22.3 1.5 23 441-463 5-27 (74)
9 d1egoa_ c.47.1.1 (A:) Glutared 6.3 72 0.0052 23.6 0.9 23 441-463 5-27 (85)
10 d1j9ba_ c.47.1.12 (A:) Arsenat 6.0 1E+02 0.0075 25.3 1.8 27 441-467 4-31 (138)
No 1
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.58 E-value=9.6 Score=29.58 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=21.3
Q ss_pred hhhhcCcce-eeeeeecCCCcccccCcCCCCCCCccccccccC
Q 007321 31 KDVEKGEVV-VEEKVVDSNSNVNINNINGEQRGFNASMMQTLN 72 (608)
Q Consensus 31 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (608)
=..++|+.+ |.|+. +.+.+.-....+++..=||.+-++.+.
T Consensus 22 Ls~~~Gd~v~Vl~~~-~~~~~w~~~~~~g~~G~~P~~Yve~~~ 63 (93)
T d1uffa_ 22 MSFNSGDIIQVDEKT-VGEPGWLYGSFQGNFGWFPCNYVEKMP 63 (93)
T ss_dssp CCBCTTCEEEECSSC-CCSSSEEEEEETTEEEEEETTTEEECC
T ss_pred ccCcCCCEEEEEEec-cCCCCEEEEEeCCcEEEEchHHEEECC
Confidence 467778643 22332 223333334456666666766676443
No 2
>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.68 E-value=17 Score=26.31 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=10.4
Q ss_pred CCCCCCc-hhhhhhhcCc
Q 007321 21 GGEGGGE-EEVKDVEKGE 37 (608)
Q Consensus 21 ~~~~~~~-~~~~~~~~~~ 37 (608)
|.|.|+| ||+-|.|+|.
T Consensus 20 ~~e~D~q~d~~iDle~GS 37 (58)
T d2e9xd2 20 EPDTDEQRDYVIDLEKGS 37 (58)
T ss_dssp CCSSCGGGCEEEEECTTC
T ss_pred CCccCcccceeEecccCc
Confidence 4455554 4445889984
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.57 E-value=53 Score=26.06 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=23.1
Q ss_pred hhcCCchhHhHHHHHHHHHhcCchhh
Q 007321 440 AAYGKGFVQASQDTWALFERQEMEPI 465 (608)
Q Consensus 440 AI~G~~F~~SAk~a~~Ll~rn~~~al 465 (608)
-+||.+=|.++|+|.++++.+|...-
T Consensus 3 ~iY~~p~Cs~srka~~~L~~~~i~~~ 28 (114)
T d1rw1a_ 3 VLYGIKACDTMKKARTWLDEHKVAYD 28 (114)
T ss_dssp EEEECSSCHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCChHHHHHHHHHHHcCCCeE
Confidence 37999999999999999999998843
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=8.32 E-value=51 Score=22.63 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=4.7
Q ss_pred hcCCCCCCCc
Q 007321 18 EEGGGEGGGE 27 (608)
Q Consensus 18 ~~~~~~~~~~ 27 (608)
+-|.+|||||
T Consensus 35 GPn~v~ee~e 44 (45)
T d1kqfb2 35 GPNKEVDDDE 44 (45)
T ss_dssp CCBCSCSSTT
T ss_pred CCCccccccC
Confidence 4455444444
No 5
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=7.54 E-value=49 Score=26.32 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=23.1
Q ss_pred HhhcCCchhHhHHHHHHHHHhcCchh
Q 007321 439 IAAYGKGFVQASQDTWALFERQEMEP 464 (608)
Q Consensus 439 iAI~G~~F~~SAk~a~~Ll~rn~~~a 464 (608)
+-+||.+=|.++|+|.+.++.++...
T Consensus 2 i~ly~~~~C~~~rka~~~L~~~~i~~ 27 (114)
T d1z3ea1 2 VTLYTSPSCTSCRKARAWLEEHEIPF 27 (114)
T ss_dssp EEEEECTTCHHHHHHHHHHHHTTCCE
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCCe
Confidence 45799999999999999999999873
No 6
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}
Probab=7.36 E-value=66 Score=23.13 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred hcCCchhHhHHHHHHHHHhcCch
Q 007321 441 AYGKGFVQASQDTWALFERQEME 463 (608)
Q Consensus 441 I~G~~F~~SAk~a~~Ll~rn~~~ 463 (608)
||+++.|.=+++|-+||.+++..
T Consensus 9 iYs~~~C~~C~~ak~lL~~~~i~ 31 (74)
T d1nm3a1 9 IFTKPGCPFCAKAKQLLHDKGLS 31 (74)
T ss_dssp EEECSSCHHHHHHHHHHHHHTCC
T ss_pred EEECCCCHHHHHHHHHHHHcCCC
No 7
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=6.85 E-value=33 Score=23.51 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhcCCCCCCCchhhhhhhcC
Q 007321 8 VERETQNKEEEEGGGEGGGEEEVKDVEKG 36 (608)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (608)
++|=.||.|..-||.|+|-||=..=+|-|
T Consensus 7 i~RIrERAEDSGNESeGD~eELs~lvemg 35 (45)
T d1vpua_ 7 IDRITERAEDSGNESEGDQEELSALVERG 35 (45)
T ss_dssp HHHHHHTTCHHHHTTTTHHHHTCSSCCGG
T ss_pred HHHHHHHcccCCCCCcccHHHHHHHHhcc
No 8
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=6.61 E-value=86 Score=22.33 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred hcCCchhHhHHHHHHHHHhcCch
Q 007321 441 AYGKGFVQASQDTWALFERQEME 463 (608)
Q Consensus 441 I~G~~F~~SAk~a~~Ll~rn~~~ 463 (608)
+|+++.|.-++++-++++++++.
T Consensus 5 iYt~~~C~~C~~ak~~L~~~~i~ 27 (74)
T d1r7ha_ 5 LYTKPACVQCTATKKALDRAGLA 27 (74)
T ss_dssp EEECTTCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCChhHHHHHHHHHHcCCc
No 9
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}
Probab=6.32 E-value=72 Score=23.63 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred hcCCchhHhHHHHHHHHHhcCch
Q 007321 441 AYGKGFVQASQDTWALFERQEME 463 (608)
Q Consensus 441 I~G~~F~~SAk~a~~Ll~rn~~~ 463 (608)
||+++.|.-+++|-+|+.+++..
T Consensus 5 iysk~~Cp~C~~aK~ll~~~~~~ 27 (85)
T d1egoa_ 5 IFGRSGCPYCVRAKDLAEKLSNE 27 (85)
T ss_dssp EECCTTSTHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHhHHHHHHHHHHcCCC
No 10
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=5.99 E-value=1e+02 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred hcCCchhHhHHHHHHHHHhcCch-hhcc
Q 007321 441 AYGKGFVQASQDTWALFERQEME-PIVD 467 (608)
Q Consensus 441 I~G~~F~~SAk~a~~Ll~rn~~~-alVn 467 (608)
+||.+=|..+|+|.++++.++.. ..++
T Consensus 4 iY~~p~Cs~srkal~~L~~~~i~~~~id 31 (138)
T d1j9ba_ 4 IYHNPACGTSRNTLEMIRNSGTEPTIIL 31 (138)
T ss_dssp EECCTTCHHHHHHHHHHHHTTCCCEEEC
T ss_pred EEECCCCHHHHHHHHHHHHCCCCeEEEe
Done!