BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007323
(608 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S + ++R+K+ + +Y+ +L +R++I+ + +Y + E + +++ SIR +
Sbjct: 5 SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDV 64
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ + VP F G S F+ ++V L E F P + ++++G D+++F+ G ++
Sbjct: 65 ANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 498
I +G + L S FGE+ +L + +V+ C L + Q F ++D
Sbjct: 125 --IIMSDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLD 178
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 102/214 (47%), Gaps = 11/214 (5%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 62
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 63 INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 120
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ + L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 121 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 177
Query: 501 FCDGRKVLTNLLQ-----GKESDLRLKQLQSDIT 529
R T L GK++ + L ++Q D+
Sbjct: 178 PMMRRAFETVALDRLDRIGKKNSILLHKVQHDLN 211
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
+EL ++ AA +G+ +++ LI GAD N +D DGR+PLH AA G++EI+ LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 597 DINLK 601
D+N K
Sbjct: 62 DVNAK 66
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL K +D+ K H + E H ++ +L LI G
Sbjct: 47 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG-----------HKEIVKL--LISKG 93
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D DGR+PLH AA G++EI+ LI KG D+N
Sbjct: 94 ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G ++ LI GAD N D DGR+PLH AA G++EI+ LI KG D+N K
Sbjct: 44 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL K +D+ K H + E H ++ +L LI G
Sbjct: 80 EGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG-----------HKEIVKL--LISKG 126
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
AD N +D DGR+PL LA G EEI+ L ++G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
+EL ++ AA +G+ +++ L+ GADPN +D DGR+PLH AA G++EI+ L+ KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 597 DINLK 601
D N K
Sbjct: 62 DPNAK 66
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL K +D K H + H ++ +L L+ G
Sbjct: 47 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG-----------HKEIVKL--LLSKG 93
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
ADPN D DGR+PLH AA G++EI+ L+ KG D N
Sbjct: 94 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA +G ++ L+ GADPN D DGR+PLH AA G++EI+ L+ KG D N K
Sbjct: 44 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 99
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL K +D K H + H ++ +L L+ G
Sbjct: 80 NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG-----------HKEIVKL--LLSKG 126
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
ADPN +D DGR+PL LA G EEI+ L ++G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R KI
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 69 INFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ + L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 127 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
+EL ++ AA +G+ +++ LI GAD N +D DGR+PLH AA G++E++ LI KG
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 597 DINLK 601
D+N K
Sbjct: 62 DVNAK 66
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL K +D+ K H H AE H ++ +L LI G
Sbjct: 47 NGHKEVVKLLISKGADVNAKDSDGRTPLH---HAAENG--------HKEVVKL--LISKG 93
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D DGR+PLH AA G++E++ LI KG D+N
Sbjct: 94 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
++ AA +G ++ LI GAD N D DGR+PLH AA G++E++ LI KG D+N K
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 99
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL K +D+ K H H AE H ++ +L LI G
Sbjct: 80 NGHKEVVKLLISKGADVNAKDSDGRTPLH---HAAENG--------HKEVVKL--LISKG 126
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
AD N +D DGR+PL LA G EE++ L ++G
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 317 LIVKGSKTEK--FRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIP 373
L+ +GS + + +++K + +Y++ ++L D R +I + +Y+ + E S+L ++
Sbjct: 1 LVPRGSDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELN 60
Query: 374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 433
+R +I + +PLF F+ ++ +L E F PG+ I+ +G + ++YF
Sbjct: 61 GPLREEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYF 120
Query: 434 VCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
+ G V + G ++ L S FGE+S+L + +V+ RL + +F
Sbjct: 121 IQHGV---VSVLTKGNKEMK--LSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNF 175
Query: 494 TNIIDIY 500
+++ Y
Sbjct: 176 NEVLEEY 182
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 6 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 66 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 4 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 63
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 64 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 121
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 122 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 178
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 62
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 63 INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 120
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ + L S FGE+ +L + V+ CRL + +F +++ Y
Sbjct: 121 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVLEEY 177
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G + ++YF+ G
Sbjct: 69 VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 127 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y++ ++L D+R +I + +Y+ + E ++L ++ +R +I
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENILSELNDPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ +PLF F+ ++ +L E F PG+ I+ +G V ++YF+ G
Sbjct: 69 VNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
G+ +++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 127 -AGVITKSSKEMK--LTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++AGA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
D N D DG +PLHLAA G+ EI+ L++ G D+N K
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++AGAD N D DG +PLHLAA G+ EI+ L++ G D+N
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 598 INLK 601
+N K
Sbjct: 61 VNAK 64
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
AA G L +E L++AGAD N D G++P LA G+E+I L
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++AGA
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
D N D DG +PLHLAA G+ EI+ L++ G D+N K
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++AGAD N D DG +PLHLAA G+ EI+ L++ G D+N
Sbjct: 75 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 598 INLK 601
+N K
Sbjct: 61 VNAK 64
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
AA G L +E L++AGAD N D G++P LA G E+I L
Sbjct: 108 AAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++AGA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
D N D DG +PLHLAA G+ EI+ L++ G D+N K
Sbjct: 72 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 109
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++AGAD N D DG +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 39/65 (60%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 597 DINLK 601
D+N K
Sbjct: 72 DVNAK 76
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
+EL ++ AA +G+ +++ L+ GAD N +D DG++PLHLAA G++E++ L+ +G
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 597 DINLK 601
D N K
Sbjct: 62 DPNAK 66
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 524 LQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 583
L++ + S + + L + + H ++ +L L+ GADPN D DG++PLHLAA G
Sbjct: 24 LENGADVNASDSDGKTPLHLAAENGHKEVVKL--LLSQGADPNAKDSDGKTPLHLAAENG 81
Query: 584 YEEIMTFLIQKGVDINLK 601
++E++ L+ +G D N K
Sbjct: 82 HKEVVKLLLSQGADPNAK 99
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL + +D K H++ H ++ +L L+ G
Sbjct: 47 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG-----------HKEVVKL--LLSQG 93
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
ADPN D DG++PLHLAA G++E++ L+ +G D N
Sbjct: 94 ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+G K + LL + +D K H++ H ++ +L L+ G
Sbjct: 80 NGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG-----------HKEVVKL--LLSQG 126
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
ADPN +D DGR+PL LA G EE++ L ++G
Sbjct: 127 ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
S ++++K + +Y + ++L D R +I + +Y+ + E S+L ++ +R +I
Sbjct: 6 SSRRQYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQGKXFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
+ PLF F+ + +L E F PG+ I+ +G + + YF+ G
Sbjct: 66 VNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
V + G ++ L S FGE+ +L + +V+ CRL + +F +++ Y
Sbjct: 124 -VSVLTKGNKE--XKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AAY G L +E L++ GAD N D DG +PLHLAA GY EI+ L++ G D+N
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
GRK+L G++ ++R+ +D+ + L L AAY G L +E L++ G
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHL----AAYSGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD + +D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 71 ADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 597 DIN 599
D++
Sbjct: 72 DVD 74
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ + + + S H L + AAY G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNASDHVGWTPLHL--AAYFGHLEIVEVLLKNGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
D N D G +PLHLAA RG+ E++ L++ G D+N
Sbjct: 72 DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D++G +PLHLAA+ G+ EI+ L++ G D+N
Sbjct: 87 AADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N +D+ G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AAY G L +E L++ GAD N DY G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ + L L VN+ G L +E L++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNN----GHLEIIEVLLKYA 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N +D G +PLHLAA RG+ EI+ L++ G D+N
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D+ G +PLHL + G+ EI+ L++
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 597 DINLKGNS 604
D+N S
Sbjct: 72 DVNASDKS 79
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ + + L L AA G L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHL----AARVGHLEIVEVLLKNG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D+ G +PLHLAA RG+ EI+ L++ G D+N
Sbjct: 71 ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN 107
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA +G L ++ L+ AGAD N D +GR+PLHLAA G+ E++ L++ G D+N K
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA +G L ++ L+ AGAD N D +GR+PLHLAA G+ E++ L++ G D+N K
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
AA +G L ++ L+ AGAD N D +GR+PLHLAA G+ E++ L++ G
Sbjct: 75 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
+GR+PLHLAA G+ E++ L++ G D+N K
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK 31
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA +G L ++ L+ AGAD N D +GR+PLHLAA G+ E++ L++ G D+N K
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
AA +G L ++ L+ AGAD N D +GR+PLHLAA G+ E++ L++ G
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
+GR+PLHLAA G+ E++ L++ G D+N K
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK 31
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ H + L L AA+ G +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHL----AAWIGHPEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D DG +PLHLAA G+ EI+ L++ G D+N
Sbjct: 71 ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN 107
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA +G L +E L++ GAD N D G +PLHLAA RG+ EI+ L++ G D+N
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 597 DINLK 601
D+N +
Sbjct: 72 DVNAR 76
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ + + + H L + +A H ++ +E L+R GA
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADANAYDHYGRTPLHMAAAVGHLEI--VEVLLRNGA 59
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
D N D +G +PLHLAAS G+ EI+ L++ G D+N K
Sbjct: 60 DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+L K+ AA G ++ L+ GAD N D+ GR+PLH+AA+ G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 598 IN 599
+N
Sbjct: 61 VN 62
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D G +PL+LAA G+ EI+ L++ G D+N
Sbjct: 75 AASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
AAY G L +E L++ GAD N D G++ ++ G E++ L
Sbjct: 108 AAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N TD DG +PLHLAAS G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ + + + + ++ L + AA +G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNATDNDGYTPLHL--AASNGHLEIVEVLLKNGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
D N +D G +PLHLAA+ G+ EI+ L++ G D+N N
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN 111
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D DG +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA+ G L +E L++ GAD N D +G +PLHLAA+RG+ EI+ L++ G D+N
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
AAY G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N K ++
Sbjct: 54 AAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDN 112
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N +D G +PLHLAA RG+ EI+ L++ G D+N
Sbjct: 87 AARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA+ G L +E L++ GAD N D G +PLHLAA RG+ EI+ L++ G D+N
Sbjct: 54 AAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D+ G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 597 DINLK 601
D+N K
Sbjct: 72 DVNAK 76
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
+++AA +G +++ L+ GAD N DG +PLHLAA G+ EI+ L+ KG D+N +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
DG L N + ++ K L + + L + + H ++ +L L+ G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL--LLAKG 65
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AD N DG +P HLA G+ EI+ L KG D+N +
Sbjct: 66 ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
A ++ AA +G L +E L++ GAD N DY+G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N TD+ G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N K
Sbjct: 54 AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAK 109
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 534 KHEAELALK-------VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE 586
KH A++ K ++ AAY G L +E L++ GAD N D G++ ++ G E+
Sbjct: 101 KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 587 IMTFL 591
+ L
Sbjct: 161 LAEIL 165
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ L L AA G L +E L++ G
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N +D GR+PLHLAA+ G+ EI+ L++ G D+N
Sbjct: 71 ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ A G ++ L+ GAD N D G +PLHLAA RG+ EI+ L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L GAD N DY G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 597 DINLKGNS 604
D+N GN+
Sbjct: 72 DVNATGNT 79
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLR-LKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R L +D+ + L L AA G L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHL----AAMLGHLEIVEVLLKNG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N T GR+PLHLAA + EI+ L++ G D+N
Sbjct: 71 ADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN 107
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ L L AA G L +E L++ G
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N +D GR+PLHLAA+ G+ EI+ L++ G D+N
Sbjct: 71 ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ A G ++ L+ GAD N D G +PLHLAA RG+ EI+ L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ + K L L AA + L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL----AADYDHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D DG +PLHLAA G+ EI+ L++ G D+N
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PLHLAA + EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 597 DINLKGN 603
D+N N
Sbjct: 72 DVNAHDN 78
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ ++ +A ++ AA++G L +E L++ GA
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
D N D+ G +PL LAA G+ EI+ L++ G D+N
Sbjct: 72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D +G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ ++ +A ++ AA +G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
D N D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 72 DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N TD G +PLHLAA+ G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ L L AA G L +E L++ G
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D GR+PLHLAA+ G+ EI+ L++ G D+N
Sbjct: 71 ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ A G ++ L+ GAD N D G +PLHLAA RG+ EI+ L++ G
Sbjct: 12 SDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 597 DINLK 601
D+N +
Sbjct: 72 DVNAR 76
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA +G L +E L++ GAD N TD G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ + L L AA G L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHL----AAIKGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 39/63 (61%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G++PLHLAA +G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ ++ +A ++ AA +G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
D N D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 72 DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N TD G +PLHLAA+ G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
A +GDL +++ + G D NRT GR PLH AA G EI+ FL+ KG DIN
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
A +GDL +++ + G D NRT GR PLH AA G EI+ FL+ KG DIN
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ L L AA +G L +E L++ G
Sbjct: 7 GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHL----AAANGQLEIVEVLLKNG 62
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N +D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AAY G L +E L++ GAD N D G +PLHLAA G EI+ L++ G D+N
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+L K+ AA G ++ L+ GAD N TD +G +PLHLAA+ G EI+ L++ G D
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 598 IN 599
+N
Sbjct: 65 VN 66
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 597 DINLKGN 603
D+N + N
Sbjct: 72 DVNAEDN 78
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
G+K+L G++ ++R+ ++ + + ++ AA G L +E L++ GA
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGA---DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
D N D G +PLHLAA RG+ EI+ L++ G D+N
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD N D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G L +E L++ GAD + D G +PLHLAA G+ EI+ L++ G D+N
Sbjct: 54 AAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN 107
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ LI GAD N D G +PLHLAA G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 597 DIN 599
D++
Sbjct: 72 DVD 74
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+L K+ AA G ++ L+ GAD N D DG +PLHLAA G+ EI+ L++ G D
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 598 IN 599
+N
Sbjct: 61 VN 62
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
G+K+L G++ ++R+ +D+ +K E L + A HG L +E L++ G
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVN---AKDEYGLT-PLYLATAHGHLEIVEVLLKNG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AD N D G +PLHLAA G+ EI L++ G D+N
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PL+LA + G+ EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE--SSYTEASVLQDIPISIRAK 379
S+ + + DL +I +RL + + +++ + + + + +L+D P +RA
Sbjct: 9 SRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRAD 68
Query: 380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL 439
I+ L ++ +PLF+ S + + + + F PGE ++ +G+ + +YFVC G +
Sbjct: 69 IAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
Query: 440 E 440
E
Sbjct: 128 E 128
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
+ H E L + A+ GD+ +E L++ G+DPN D+ G +PLH A + G+ +++ L+
Sbjct: 6 TNHRGETLLHI--ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 593 QKGVDINLKG 602
Q +N G
Sbjct: 64 QHKALVNTTG 73
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
++ A HG L +E L++ A N T Y SPLH AA G+ +I+ L+ G N
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
G DP T++ G + LH+A+ +G + +L+Q G D N+K ++
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA 42
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
A+ A+ ++ A G ++ L+ + A PN+ D G +PL A S G+ E++ L+Q G
Sbjct: 117 ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 597 DINL---KGNSIMQ 607
IN KGN+ +
Sbjct: 177 SINASNNKGNTALH 190
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 489 DKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQL-QSDITFHISKHEAELALKVNSAA 547
D + + D FC L + + RL ++ S + +++ + L V AA
Sbjct: 40 DAEDTVSAADPEFC---HPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHV--AA 94
Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN---LKGNS 604
HG + L++ GA+ + D PLHLA +G+ +++ L+ N L GN+
Sbjct: 95 LHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNT 154
Query: 605 IM 606
+
Sbjct: 155 PL 156
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA +G E L+RAG + RT D R+PLH+AAS G+ I+ L++ G D+N K
Sbjct: 41 AAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGADVNAK 96
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G +E L++ GAD N D + LH A ++E++ LI+ G D++ +
Sbjct: 74 AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ 129
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
+L K+ AA G ++ L+ GA P TD+ G SPLHLAA G+ L++ GV
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALK-VNSAAYHGDLYQLEGLIRA 561
G+K+L G++ ++R+ +D+ E ++ L ++ AA + L +E L++
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVN-----AEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
GAD N D G +PLHL A G+ EI+ L++ G D+N
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD N D G +PLHLAA + EI+ L++ G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 597 DIN 599
D+N
Sbjct: 72 DVN 74
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD D +G +PLHLAA G+ E++ L++ G
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 597 DIN 599
D+N
Sbjct: 64 DVN 66
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA HG + +E L++ GADP S L LA S+GY +I+ L+ GVD+N
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+L V+ A G++ L I N TD +G +PL AA+ G ++ FL+Q G D
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 600 LKG 602
L G
Sbjct: 64 LLG 66
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
E AL + + + D+ ++ L+ G D N D++G +PL A + + + L++ G D
Sbjct: 70 ESALSLACSKGYTDIVKM--LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127
Query: 598 INLKGNS 604
++ +S
Sbjct: 128 PTIETDS 134
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA HG + +E L++ GADP S L LA S+GY +I+ L+ GVD+N
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 112
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+L V+ A G++ L I N TD +G +PL AA+ G ++ FL+Q G D
Sbjct: 20 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 600 LKG 602
L G
Sbjct: 80 LLG 82
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
E AL + + + D+ ++ L+ G D N D++G +PL A + + + L++ G D
Sbjct: 86 ESALSLACSKGYTDIVKM--LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143
Query: 598 INLKGNS 604
++ +S
Sbjct: 144 PTIETDS 150
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA HG + +E L++ GADP S L LA S+GY +I+ L+ GVD+N
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 94
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+L V+ A G++ L I N TD +G +PL AA+ G ++ FL+Q G D
Sbjct: 2 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 600 LKG 602
L G
Sbjct: 62 LLG 64
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
E AL + + + D+ ++ L+ G D N D++G +PL A + + + L++ G D
Sbjct: 68 ESALSLACSKGYTDIVKM--LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125
Query: 598 INLKGNS 604
++ +S
Sbjct: 126 PTIETDS 132
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
L V + AY G L +L E ++ + RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 8 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 600 LKGNS 604
K ++
Sbjct: 68 DKDDA 72
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+E L++ G N D G SPLH+AAS G +EI+ L+ KG +N
Sbjct: 56 VEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G ++ L+ GA N + +G +PLH AAS+ EI L++ G + + K
Sbjct: 80 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
A ++ AA G+L + L+ A N D +G +PLHLA E L+ +G I
Sbjct: 140 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 198
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
L V + AY G L +L E ++ + RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 9 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Query: 600 LKGNS 604
K ++
Sbjct: 69 DKDDA 73
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+E L++ G N D G SPLH+AAS G +EI+ L+ KG +N
Sbjct: 57 VEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G ++ L+ GA N + +G +PLH AAS+ EI L++ G + + K
Sbjct: 81 AASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 136
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
A ++ AA G+L + L+ A N D +G +PLHLA E L+ +G I
Sbjct: 141 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 199
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 528 ITFHISKHE--AELALKVNSAAYH-----GDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
+ ++ISK +L +NS H G L + L++ GADP+ D +G S +HLAA
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117
Query: 581 SRGYEEIMTFLIQKGVDINL 600
G+ I+ +LI KG D+++
Sbjct: 118 QFGHTSIVAYLIAKGQDVDM 137
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 547 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
AY G L +L+ I A RTD D R+ LH A S G+ EI+ FL+Q GV +N K ++
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 514 GKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGR 573
GK +L+ + L + ++ AL +A H ++ + L++ G N D G
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF--LLQLGVPVNDKDDAGW 74
Query: 574 SPLHLAASRGYEEIMTFLIQKGVDIN 599
SPLH+AAS G +EI+ L+ KG +N
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVN 100
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G ++ L+ GA N + +G +PLH AAS+ EI L++ G + + K
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
A ++ AA G+L + L+ A N D +G +PLHLA E FL+ +G I
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 547 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
AY G L +L+ I A RTD D R+ LH A S G+ EI+ FL+Q GV +N K ++
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 514 GKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGR 573
GK +L+ + L + ++ AL +A H ++ + L++ G N D G
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEF--LLQLGVPVNDKDDAGW 74
Query: 574 SPLHLAASRGYEEIMTFLIQKGVDIN 599
SPLH+AAS G +EI+ L+ KG +N
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVN 100
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G ++ L+ GA N + +G +PLH AAS+ EI L++ G + + K
Sbjct: 80 AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
A ++ AA G+L + L+ A N D +G +PLHLA E FL+ +G I
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ + +F+G +N ++ + F G I ++G D+LY + GK++ +G
Sbjct: 28 LSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDG 87
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQ-VC 480
E+ ++ + P+ FGE+SI P P T VC
Sbjct: 88 RENLLTIMGPSDMFGELSIFD--PGPRTSSAVC 118
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 8 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 67
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 68 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 116
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL---- 439
++ +IE VPLFK +IV + E+ + GE I+ +G D Y + G++
Sbjct: 157 MFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILI 216
Query: 440 -EEVGIEENG--TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNI 496
+ +NG E +++ H FGE++++ N P+ + + L +D Q+F +
Sbjct: 217 RSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYGVGDVKCLVMDVQAFERL 276
Query: 497 I 497
+
Sbjct: 277 L 277
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
LFK E ++Q++ + E+ E ++++G+ D Y + G + + ++N T
Sbjct: 45 LFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRSVG 104
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513
Y + SFGE++++ N P+ T+ L +D+ +F II RK+ + ++
Sbjct: 105 QYDN-RGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIE 163
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 6 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 65
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 66 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 114
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 30 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 89
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 90 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 5 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 64
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
E+ ++ + P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 65 RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 113
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 45 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 103
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 147
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 51 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 109
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 110 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 153
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
A++ G L ++ L++ GA PN ++ +PLH+AA G+ E+ +L+Q +N K
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
L++ G N G +PLHLAA G+ E++ L+ K + NL S
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
A +H +L ++ L+ G P+ ++G +PLH+AA + E+ L+Q G N
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 549 HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594
H ++ +L L+ A+PN G +PLH+AA G+ E + L++K
Sbjct: 92 HTNMVKL--LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
LI+ G + T G +PLH+A+ G +++ FL+Q D+N K
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 340
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 549 HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
H D+ L L++ GA PN DG +PL +A GY + L
Sbjct: 356 HTDIVTL--LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G + L+ A+ N + G +PLHL A G+ + LI+ GV ++
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 524 LQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 583
LQ + ++S + E L + + A H ++ + L++ A N D ++PLH AA G
Sbjct: 34 LQRGASPNVSNVKVETPLHMAARAGHTEVAKY--LLQNKAKVNAKAKDDQTPLHCAARIG 91
Query: 584 YEEIMTFLIQKGVDINL 600
+ ++ L++ + NL
Sbjct: 92 HTNMVKLLLENNANPNL 108
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 405 QIVIRLHEEFFLP-GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY------VSYLH 457
++VI EE +P G I+++G+ D Y V E GT D+ V+
Sbjct: 24 RLVINCLEEKSVPKGATIIKQGDQGDYFYVV-----------EKGTVDFYVNDNKVNSSG 72
Query: 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
P SSFGE++++ N P+ TV C L +D+ +F I+
Sbjct: 73 PGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKIL 112
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
++L K+ AA G ++ L+ GAD D +G +PLHLAA G+ E++ L++ G
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Query: 597 DI 598
D+
Sbjct: 82 DV 83
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRII 254
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 440
+ +Y +IE +P K ++V + + + GE I+ +G++ D + V G+++
Sbjct: 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKI 321
Query: 441 ------EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 494
+ +EENG + ++ FGE++++ N P+ + + L +D Q+F
Sbjct: 322 TMKRKGKSEVEENGAVE-IARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFE 380
Query: 495 NII 497
++
Sbjct: 381 RLL 383
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRII 254
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 440
+ +Y +IE +P K ++V + + + GE I+ +G++ D + V G+++
Sbjct: 262 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKI 321
Query: 441 ------EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 494
+ +EENG + ++ FGE++++ N P+ + + L +D Q+F
Sbjct: 322 TMKRKGKSEVEENGAVE-IARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFE 380
Query: 495 NII 497
++
Sbjct: 381 RLL 383
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ + +F+G I + +L F G + +G D+LY + GK++ +G
Sbjct: 30 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 89
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
E+ ++ P+ FGE+SI P+ + R + +D+ + + I
Sbjct: 90 RENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
L++ GA PN D G SP+H AA G+ + + L++ G D+N+
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
L++ GA PN D G SP+H AA G+ + + L++ G D+N+
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 102
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 126
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
LFK E ++Q++ + E+ GE ++++G+ D Y + G + + ++ +G V
Sbjct: 41 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 99
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
SFGE++++ N P+ T+ L +D+ +F II
Sbjct: 100 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 143
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 440
+ +Y +IE +P K ++V + + + GE I+ +G+ D + V G++
Sbjct: 151 RKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRI 210
Query: 441 ------EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 494
+ IEENG + L FGE++++ N P+ + + L +D Q+F
Sbjct: 211 TMKRKGKSDIEENGAVEIARCLR-GQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFE 269
Query: 495 NII 497
++
Sbjct: 270 RLL 272
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
L++ GA PN D G SP+H AA G+ + + L++ G D+N
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 103
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
L++ GA PN D G SP+H AA G+ + + L++ G D+N
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
V+ AA G L L+ L+ GAD N D G P+HLA G+ +++FL
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%)
Query: 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY 452
PLF G + E ++ + + G+ I +G++ LY V GK+ G E
Sbjct: 5 PLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERT 64
Query: 453 VSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
++ L P FGE+S+L + + E LL + ++ + +I
Sbjct: 65 LALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALI 109
>pdb|4F8A|A Chain A, Cyclic Nucleotide Binding-Homology Domain From Mouse Eag1
Potassium Channel
Length = 160
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 362 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 421
S+ VLQ P +RA I L ++ P F+ S + + + PG++I
Sbjct: 2 SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61
Query: 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465
G VD L FV G LE + +E V+ L FG+V
Sbjct: 62 YHAGESVDSLCFVVSGSLEVIQDDE-----VVAILGKGDVFGDV 100
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 416 LPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPY 475
+ GE ++++GN D Y V G EV + NG ++V+ + SFGE++++ P+
Sbjct: 159 IAGETVIQQGNEGDNFYVVDQG---EVDVYVNG--EWVTNISEGGSFGELALIYGTPRAA 213
Query: 476 TVQVCELCRLLRIDKQSFTNII 497
TV+ +L ID+ S+ I+
Sbjct: 214 TVKAKTDLKLWGIDRDSYRRIL 235
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 230 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 287
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
E L P + FGE++++ P+ TV LL + F
Sbjct: 288 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 327
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 538 ELALKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
E AL A+ H Q+ E L+R GA+ N + D +PLH+AA R + ++M L + G
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 597 DIN 599
+N
Sbjct: 272 KMN 274
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 497 IDIYFCDGRKVLTNLLQGKESDLRLKQL--QSDITFHISKHEAELALKVNSAAYHGDLYQ 554
++ + DGRK L + +R+ QL Q H +K + L N+ +Y G
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNACSY-GHYEV 106
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---INLKGNSIMQI 608
E L++ GA N D +PLH AAS+ E+ + L+ G D +N G S + +
Sbjct: 107 TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
L+ GA+P+ D G + +H AA G + + L++ D+N++ N
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN 101
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
AA + L ++ LI+AGA + D +G + LHLAA +G+ E++ +L+ G +D+N + +
Sbjct: 51 AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNR 567
L LL K SD+ ++ + +I H AA+ G + E L+ A D +
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHW-------------AAFSGCVDIAEILLAAKCDLHA 172
Query: 568 TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
+ G SPLH+AA + + + + D+ LK
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK 206
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587
+ F + L + A H D+ + L++AGA+ + D R+PL AA + E
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHM--LVQAGANIDTCSEDQRTPLMEAAENNHLEA 59
Query: 588 MTFLIQKGVDINLK 601
+ +LI+ G ++ K
Sbjct: 60 VKYLIKAGALVDPK 73
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---INLKGNSIMQI 608
L+ GA+ N+ D +G PLH AAS GY +I +LI +G +N +G++ + I
Sbjct: 92 LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
AL V +A + ++ +L LI+A D N DYDG +PLH AA G EE L++ D+
Sbjct: 202 ALHVAAAKGYTEVLKL--LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 572 GRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
G + LH+AA++GY E++ LIQ D+N+K
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIK 228
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.0 bits (71), Expect = 0.94, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
L+ GA+P+ D G + +H AA G+ + + L++ D+N++ N
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDN 101
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
L+ GA+P+ D G + +H AA G+ + + L++ D+N++ N
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
IEK LF + I + F+ GE ++++G+ D Y + G+++ V +
Sbjct: 41 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD-VYV---- 95
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 96 NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
L+ GA+P+ D G + +H AA G+ + + L++ D+N++ N
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
++ AA G L L+ L+ AD N D +G PLHLAA G+ ++ FL++
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
L+ GA+P+ D G + +H AA G+ + + L++ D+N++ N
Sbjct: 56 LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
IEK LF + I + F+ GE ++++G+ D Y + G+++ V +
Sbjct: 39 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD-VYV---- 93
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 94 NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 142
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
IEK LF + I + F+ GE ++++G+ D Y + G+++ V +
Sbjct: 37 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD-VYV---- 91
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 92 NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 140
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
A+ G++ + L+ GADP+ + S L LA++ GY +I+ L+++ VDIN+
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+L ++ A G+L QL+ +R G + N+ D G +PL A++ G E + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Score = 32.3 bits (72), Expect = 0.76, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTF 590
HI E E AL + S + D+ L L+ D N D++G +PL A + + +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 591 LIQKGVDINLKGNS 604
L+ +G D+ + +S
Sbjct: 121 LLARGADLTTEADS 134
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
A+ G++ + L+ GADP+ + S L LA++ GY +I+ L+++ VDIN+
Sbjct: 43 ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+L ++ A G+L QL+ +R G + N+ D G +PL A++ G E + FL++ G D
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTF 590
HI E E AL + S + D+ L L+ D N D++G +PL A + + +
Sbjct: 63 HILAKERESALSLASTGGYTDIVGL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 591 LIQKGVDINLKGNS 604
L+ +G D+ + +S
Sbjct: 121 LLARGADLTTEADS 134
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 520 RLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLA 579
++K++ D T+ + + + E +N A ++ D+ + LI GAD N + SP A
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 580 ASRGYEEIMTFLIQKGV-DIN 599
++G EI+ ++++ D+N
Sbjct: 80 GAQGRTEILAYMLKHATPDLN 100
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI 605
+ D +G +PL++A EI LI +G DINL+ NSI
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSI 71
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
G++ ++ D DG++P+ LAA G E++ +LIQ+G +
Sbjct: 303 GSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASV 339
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
+++ + I AGAD N D D +PL LA ++ +L + G D
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGAD 191
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+E LI GA N + +PLHLAAS G+ +I+ L+Q DIN
Sbjct: 50 VEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
D N+ D G SPLH A G ++ LI +G IN+
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+GR + +L + + + + D H+ AA HG ++ L++
Sbjct: 44 EGRSAVVEMLIMRGARINVMNRGDDTPLHL-------------AASHGHRDIVQKLLQYK 90
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
AD N + G PLH A G +++ L+ G +++
Sbjct: 91 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+E LI GA N + +PLHLAAS G+ +I+ L+Q DIN
Sbjct: 55 VEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
D N+ D G SPLH A G ++ LI +G IN+
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
+GR + +L + + + + D H+ AA HG ++ L++
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHL-------------AASHGHRDIVQKLLQYK 95
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
AD N + G PLH A G +++ L+ G +++
Sbjct: 96 ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2
Length = 469
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
++ V F+ + QI + + E G + +G++ Y V G L+ E +
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 449 TEDYVS--YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
+D V+ L ++FGE SIL N P+ T+ E LLRI+++ F + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
G V+ +G Y + G + V I G V LH FG+++++ + P+ ++
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVNVV-IYGKGV---VCTLHEGDDFGKLALVNDAPRAASI 424
Query: 478 QVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESD 518
+ E C LR+DK+ F I+ R V N ++ KE D
Sbjct: 425 VLREDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHD 459
>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
Its Auto-Inhibited State
Length = 999
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
++ V F+ + QI + + E G + +G++ Y V G L+ E +
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 449 TEDYVS--YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
+D V+ L ++FGE SIL N P+ T+ E LLRI+++ F + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
G V+ +G Y + G + V I G V LH FG+++++ + P+ ++
Sbjct: 369 GTVLFNQGEEGTSWYIILKGSVN-VVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASI 424
Query: 478 QVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESD 518
+ E C LR+DK+ F I+ R V N ++ KE D
Sbjct: 425 VLREDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHD 459
>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
Activated By Camp
Length = 999
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
++ V F+ + QI + + E G + +G++ Y V G L+ E +
Sbjct: 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSS 103
Query: 449 TEDYVS--YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
+D V+ L ++FGE SIL N P+ T+ E LLRI+++ F + + Y
Sbjct: 104 HQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156
>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of
Camp-Dependent Protein Kinase
Length = 160
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
IEK LF + I + F+ GE ++++G+ D Y + G+++ + N
Sbjct: 47 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD---VYVN- 102
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 103 -NEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 150
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 510 NLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD 569
+L GK ++LR K I + LAL ++S+ G+ ++ +I DP+ +
Sbjct: 10 SLPPGKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPN 67
Query: 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+G + LH A G+ EI+ FL+Q GV++N
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVN 97
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
+ E AL A H ++ + L++ G + N D DG +PLH AAS ++ FL
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKF--LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 592 IQKGVDINLKGNSIMQ 607
++ G + S MQ
Sbjct: 123 VESGAAVFAMTYSDMQ 138
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK---GNSIMQI 608
P+ Y G PL AA G EEI+ LI+ G DI + GN+++ I
Sbjct: 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
A+ HG L +E L+ GAD N + +GR+ LHLA ++++ L++ G D+N
Sbjct: 121 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 512 LQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD 571
L G D L+ + + H++ + LA V L +++A T+Y+
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLACEQGCLA-SVGVLTQSCTTPHLHSILKA------TNYN 113
Query: 572 GRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
G + LHLA+ GY I+ L+ G D+N +
Sbjct: 114 GHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594
E L+ AG DP D+ G +PLHLA +G + L Q
Sbjct: 59 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS 97
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
E + ++ AA + + +E L++ GAD + D G PLH A S G+ E+ L++ G
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 100
Query: 596 VDINL 600
+N+
Sbjct: 101 AVVNV 105
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---IN 599
+++A +G E L++ GA N D +PLH AA++G EI L+Q G D N
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
Query: 600 LKGNSIMQI 608
GN+ + +
Sbjct: 141 RDGNTPLDL 149
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA GD+ ++ L + N D +GR +PLH AA ++ +L+Q G D++ K
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
E + ++ AA + + +E L++ GAD + D G PLH A S G+ E+ L++ G
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 596 VDINL 600
+N+
Sbjct: 99 AVVNV 103
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---IN 599
+++A +G E L++ GA N D +PLH AA++G EI L+Q G D N
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
Query: 600 LKGNSIMQI 608
GN+ + +
Sbjct: 139 RDGNTPLDL 147
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA GD+ ++ L + N D +GR +PLH AA ++ +L+Q G D++ K
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
E + ++ AA + + +E L++ GAD + D G PLH A S G+ E+ L++ G
Sbjct: 43 EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 102
Query: 596 VDINL 600
+N+
Sbjct: 103 AVVNV 107
Score = 35.4 bits (80), Expect = 0.095, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---IN 599
+++A +G E L++ GA N D +PLH AA++G EI L+Q G D N
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
Query: 600 LKGNSIMQI 608
GN+ + +
Sbjct: 143 RDGNTPLDL 151
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMT 589
IS +E ++ AA GD+ ++ L + N D +GR +PLH AA ++
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 590 FLIQKGVDINLK 601
+L+Q G D++ K
Sbjct: 64 YLLQHGADVHAK 75
>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
pdb|3IIA|A Chain A, Crystal Structure Of Apo (91-244) Ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PLQ|A Chain A, Crystal Structure Of Pka Type I Regulatory Subunit Bound
With Rp-8-Br- Camps
pdb|3PNA|A Chain A, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
pdb|3PNA|B Chain B, Crystal Structure Of Camp Bound (91-244)ria Subunit Of
Camp-Dependent Protein Kinase
Length = 154
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
IEK LF + I + F+ GE ++++G+ D Y + G+++ + N
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMD---VYVN- 95
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
++ + + SFGE++++ P+ TV+ +L ID+ S+ I+
Sbjct: 96 -NEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
+F+GC +E + + + G+V++ +G + G E + ++G +
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-II 78
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELC---------------------RLLRIDKQ- 491
+ P GE+++L + P+ TV E RLLR +Q
Sbjct: 79 ARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQR 138
Query: 492 --SFTNIIDIYFCDGRKVL 508
+F + I + DG +++
Sbjct: 139 LAAFVSPIPVRLADGTQLM 157
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
+ E AL A H ++ + L++ G + N D DG +PLH AAS ++ FL
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKF--LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 592 IQKGVDINLKGNSIMQ 607
++ G + S MQ
Sbjct: 123 VESGAAVFAMTYSDMQ 138
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Query: 510 NLLQGKESDLRLKQLQSDITFH---ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN 566
+L GK ++LR + S+ H + + LAL ++S+ G+ ++ +I DP+
Sbjct: 8 SLPPGKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPS 64
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+ +G + LH A G+ EI+ FL+Q GV++N
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 97
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
A+ HG L +E L+ GAD N + +GR+ LHLA ++++ L++ G D+N
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRG 583
E L+ AG DP D+ G +PLHLA +G
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQG 89
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 512 LQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD 571
L G D L+ + + H++ + LA V L +++A T+Y+
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLA-SVGVLTQSCTTPHLHSILKA------TNYN 116
Query: 572 GRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
G + LHLA+ GY I+ L+ G D+N +
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
E L+ G++ N D+ G++PL + GY E+ FL++ G ++N
Sbjct: 85 EKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
L+ GA+ N + +G +PL +A+ G EI+ L++ G DI+ +
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
+F+GC +E + + + G+V++ +G + G E + ++G +
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-II 78
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELC---------------------RLLRIDKQ- 491
+ P GE+++L + P+ TV E RLLR +Q
Sbjct: 79 ARALPGXIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATXVHIPGVGERLLRTARQR 138
Query: 492 --SFTNIIDIYFCDGRKV-LTNLLQG 514
+F + I + DG ++ L +L G
Sbjct: 139 LAAFVSPIPVRLADGTQLXLRPVLPG 164
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+++ PLF+ + + + + E F P E+++E+ + L+ V G + + G
Sbjct: 8 LKRSPLFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGG 67
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
E + ++ GE ++L + + +V+ R L + ++ F I+
Sbjct: 68 RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHREHFELIL 116
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 72
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
E L P + FGE++++ P+ TV LL + F
Sbjct: 73 VE-----LGPGAFFGEMALISGEPESATVSAATTVSLLSLHSADF 112
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+E L+R GADP +G +P LAA G +++ + KG D+N
Sbjct: 55 VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G + L+ + GAD N D+ G + AA G + + FL ++G ++NL+
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 134
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
L E L++ GA+ N+ D GR PLH A G+ + +++G D+ +
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
L E L++ GA+ N+ D GR PLH A G+ + +++G D+ +
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
L E L++ GA+ N+ D GR PLH A G+ + +++G D+ +
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR 297
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 70
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
E L P + FGE++++ P+ TV LL + F
Sbjct: 71 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 110
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 70
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
E L P + FGE++++ P+ TV LL + F
Sbjct: 71 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 110
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 17 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 74
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
E L P + FGE++++ P+ TV LL + F
Sbjct: 75 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 114
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 72
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
E L P + FGE++++ P+ TV LL + F
Sbjct: 73 VE-----LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADF 112
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462
I +IV ++ + I+++G+V +Y + GK+E + + G + + + P F
Sbjct: 55 IQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE---VTKEGVK--LCTMGPGKVF 109
Query: 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
GE++IL N + TV+ +L ID+Q F I+
Sbjct: 110 GELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM 144
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEV 442
+ +VPLF+ ++ I RL F ++ +G+ V+++ F+ G+LE V
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV 61
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+E L+R GADP +G +P LAA G +++ + KG D+N
Sbjct: 75 VELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN 119
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
AA G + L+ + GAD N D+ G + AA G + + FL ++G ++NL+
Sbjct: 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR 154
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ + PLF E ++ E G+ + +G+ D+LY V GK++ +G
Sbjct: 7 LRRNPLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI---DKQSFTNIIDIYFCDGR 505
E+ ++ + P+ GE+S+ P+ T +LL + D Q + N+
Sbjct: 67 RENXLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNV-------RP 119
Query: 506 KVLTNLLQGKESDLR-LKQLQSDITF 530
+V T LL+ LR SD+ F
Sbjct: 120 EVATALLRAVARRLRKTNDAXSDLVF 145
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
LI AGA+ N D G +PLH AAS I L+Q G I
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
AA G+L ++ ++ DP++ + +G + LH A I+ FLI G ++N
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN 81
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
A + L ++ L++ GA+ N Y G S LH A+ RG ++ L++ G D +LK
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 212
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+YDG + LH+A + +E + L+++G DI+
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADID 143
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 7/105 (6%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
+ VPLF+ + +IV L G VI G D+++FV G + N
Sbjct: 15 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVA--TPNP 72
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
E L P + FGE++++ P TV LL + F
Sbjct: 73 VE-----LGPGAFFGEMALISGEPWSATVSAATTVSLLSLHSADF 112
>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 694
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
G V+ +G Y + G + V I G V LH FG+++++ + P+ ++
Sbjct: 64 GTVLFNQGEEGTSWYIILKGSVN-VVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASI 119
Query: 478 QVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESD 518
+ E C LR+DK+ F I+ R V N ++ KE D
Sbjct: 120 VLREDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHD 154
>pdb|3OCP|A Chain A, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OCP|B Chain B, Crystal Structure Of Camp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|A Chain A, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OD0|B Chain B, Crystal Structure Of Cgmp Bound Cgmp-Dependent Protein
Kinase(92-227)
pdb|3OGJ|A Chain A, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|B Chain B, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|C Chain C, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
pdb|3OGJ|D Chain D, Crystal Structure Of Partial Apo (92-227) Of
Cgmp-Dependent Protein Kinase
Length = 139
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462
I +IV ++ + I+++G+V +Y + GK+E + + G + + + P F
Sbjct: 39 IQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE---VTKEGVK--LCTMGPGKVF 93
Query: 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
GE++IL N + TV+ +L ID+Q F I+
Sbjct: 94 GELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIM 128
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
+ D DGR PLH + S EI +FL+ K ++NL
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
D N+ G + LHLA + + E+ FLI+ G + +K
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
+ D DGR PLH + S EI +FL+ K ++NL
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
D N+ G + LHLA + + E+ FLI+ G + +K
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
+ D DGR PLH + S EI +FL+ K ++NL
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
D N+ G + LHLA + + E+ FLI+ G + +K
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK 136
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
I ++Y SVVT+TTVGYGD +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
++ AA HG L LI G N D SPLH A G+ + L++ G +N
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
E++LA ++ AA G + + LI G + + +PL+LA + L++ G
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 596 VDIN 599
D+N
Sbjct: 158 ADVN 161
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV+T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVITATTVGYGDLYPVTL 65
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 248 KMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILG 307
++GD A+ GF + + + SV T+ TVGYGD+H + V+ + ++ +G
Sbjct: 83 QLGDAPIANQSPPGF----VGAFFFSVETLATVGYGDMHP----QTVYAHAIATLEIFVG 134
Query: 308 AYLIGNMTALI 318
I T L+
Sbjct: 135 MSGIALSTGLV 145
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 248 KMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILG 307
++GD A+ GF + + + SV T+ TVGYGD+H + V+ + ++ +G
Sbjct: 83 QLGDAPIANQSPPGF----VGAFFFSVETLATVGYGDMHP----QTVYAHAIATLEIFVG 134
Query: 308 AYLIGNMTALI 318
I T L+
Sbjct: 135 MSGIALSTGLV 145
>pdb|1ZYB|A Chain A, Crystal Structure Of Transcription Regulator From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.15 A
Resolution
Length = 232
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 391 KVPLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
++PLF+G E I+ ++LH GE I++ GN QL F+ G E+ I N
Sbjct: 22 QLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKG---EISIVTNA 78
Query: 449 TEDYVS---------YLHPNSSFG 463
E+ + + P S FG
Sbjct: 79 KENIYTVIEQIEAPYLIEPQSLFG 102
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+AA G + + L+ AGADPN + GR P+ + G ++ L+ G + N
Sbjct: 18 TAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 308
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 68 TYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 116
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINL 600
A HG + ++ L+ AD N D DG + L A G++EI L+ DI+L
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
+Y +++ ++VT TTVGYGD+ V I S M+ G IG +T+ I +
Sbjct: 43 NYPDALWWAIVTATTVGYGDIVPVT----PIGRILASIMMLFGIAFIGMITSTITNFFRC 98
Query: 325 EK 326
+K
Sbjct: 99 KK 100
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
I ++Y SVVT+TTVG+GD +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYI 67
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
I +++ SVVT+TTVGYGD +F ++Y+
Sbjct: 34 IDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|3H3Z|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
pdb|3H3Z|B Chain B, Crystal Structure Of A Putative Cyclic Nucleotide Binding
Protein (Spoa0323) From Ruegeria Pomeroyi Dss-3 At 2.35
A Resolution
Length = 235
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
GE + + ++ V G ++ G+E VS SFGE L N P P +
Sbjct: 40 GETLFLQEEKAQAIHVVIDGWVKLFRXTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSA 99
Query: 478 QVCELCRLLRIDKQSFTNI 496
+ C + I F ++
Sbjct: 100 EAVTPCEVXHIPSPVFVSL 118
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
SY +++ SV T TTVGYGD++ V L
Sbjct: 84 SYPDALWWSVETATTVGYGDLYPVTL 109
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
A H D + L AGAD N+ + GR+PLHLA ++ L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+YDG +PLH+A E++ L G D+N
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
A H D + L AGAD N+ + GR+PLHLA ++ L++ G D +
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+YDG +PLH+A E++ L G D+N
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
>pdb|3FX3|A Chain A, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
pdb|3FX3|B Chain B, Structure Of A Putative Camp-Binding Regulatory Protein
From Silicibacter Pomeroyi Dss-3
Length = 237
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 31/79 (39%)
Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
GE + + ++ V G ++ G+E VS SFGE L N P P +
Sbjct: 42 GETLFLQEEKAQAIHVVIDGWVKLFRXTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSA 101
Query: 478 QVCELCRLLRIDKQSFTNI 496
+ C + I F ++
Sbjct: 102 EAVTPCEVXHIPSPVFVSL 120
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
I +++ SVVT+TTVGYGD +F ++Y+
Sbjct: 34 IDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYI 67
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVATATTVGYGDLYPVTL 86
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVATATTVGYGDLYPVTL 65
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
I ++Y SVVT+TTVGYG+ +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYI 67
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
I ++Y SVVT+TTVGYG+ +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYI 67
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 558 LIRAGADPNRTDYDGRSPLHLA 579
L+ AGAD N D GR+PLH A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAA 91
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 308
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 109
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 308
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 115
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 308
+Y +++ SV T TTVGYGD++ V L +V +++ V SF ++ A
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAA 88
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPAALWWSVETATTVGYGDLYPVTL 86
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVSTATTVGYGDLYPVTL 65
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
+AA G + ++ L+ AGA+PN + GR P+ + G + L+ G + N
Sbjct: 18 TAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN 71
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%)
Query: 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
++ AA HG L LI G N D SPLH A G+ + L++ G +N
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVQTATTVGYGDLYPVTL 65
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 41 TYPRALWWSVETATTVGYGDLYPVTL 66
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTL 65
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTL 86
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 39 TYPRALWWSVETATTVGYGDLYPVTL 64
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 601
L+ A AD N D GR+PLH A S + + LI+ + D++ +
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 88
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 601
L+ A AD N D GR+PLH A S + + LI+ + D++ +
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
N+TD G + LHLAA+ + L++ D N++ N
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDN 88
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
Y G++ LH+A R ++T L++ G D+ N
Sbjct: 99 YKGQTALHIAIERRNXTLVTLLVENGADVQAAAN 132
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 601
L+ A AD N D GR+PLH A S + + LI+ + D++ +
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL 290
+Y +++ SV T TTVGYGD++ V L
Sbjct: 61 TYPRALWWSVHTATTVGYGDLYPVTL 86
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK 601
L+ A AD N D GR+PLH A S + + LI+ + D++ +
Sbjct: 77 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 121
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
I ++Y SVVT+TTVG GD +F ++Y+
Sbjct: 34 IDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYI 67
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 264 KSYITSMYASVVTMTTVGYGDV 285
KS +++ +VVT TTVGYGDV
Sbjct: 176 KSVFDALWWAVVTATTVGYGDV 197
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 264 KSYITSMYASVVTMTTVGYGDV 285
KS +++ +VVT TTVGYGDV
Sbjct: 164 KSVFDALWWAVVTATTVGYGDV 185
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 308
+Y +++ SV T TTVGYGD+ V L +V +++ V SF ++ A
Sbjct: 39 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAA 87
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 265 SYITSMYASVVTMTTVGYGDVHAVNL-REMVFIMIYV----SFDMILGA 308
+Y +++ SV T TTVGYGD+ V L +V +++ V SF ++ A
Sbjct: 40 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAA 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,724,393
Number of Sequences: 62578
Number of extensions: 746254
Number of successful extensions: 2556
Number of sequences better than 100.0: 211
Number of HSP's better than 100.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2106
Number of HSP's gapped (non-prelim): 459
length of query: 608
length of database: 14,973,337
effective HSP length: 104
effective length of query: 504
effective length of database: 8,465,225
effective search space: 4266473400
effective search space used: 4266473400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)