Query 007323
Match_columns 608
No_of_seqs 513 out of 4021
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 22:00:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03192 Voltage-dependent pot 100.0 1.7E-86 3.6E-91 739.4 61.0 539 59-608 47-594 (823)
2 KOG0498 K+-channel ERG and rel 100.0 9.6E-86 2.1E-90 683.7 47.9 545 59-605 63-642 (727)
3 KOG0500 Cyclic nucleotide-gate 100.0 1.2E-67 2.6E-72 506.2 33.4 416 81-509 4-432 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 4.2E-64 9.2E-69 487.0 29.3 443 60-513 204-671 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 3.2E-60 6.9E-65 461.3 31.7 421 62-507 216-648 (815)
6 KOG3713 Voltage-gated K+ chann 100.0 3.3E-30 7.1E-35 251.4 16.9 230 53-321 170-433 (477)
7 KOG1419 Voltage-gated K+ chann 99.9 5.6E-26 1.2E-30 221.7 8.6 277 49-355 69-353 (654)
8 KOG1545 Voltage-gated shaker-l 99.9 5.3E-25 1.2E-29 203.6 2.2 180 103-320 253-448 (507)
9 KOG4390 Voltage-gated A-type K 99.8 3.7E-22 8E-27 186.5 -6.2 179 103-319 227-410 (632)
10 PRK09392 ftrB transcriptional 99.6 7E-15 1.5E-19 140.7 14.1 127 386-513 6-132 (236)
11 PF00520 Ion_trans: Ion transp 99.6 1.1E-14 2.3E-19 135.8 11.2 187 107-314 1-200 (200)
12 cd00038 CAP_ED effector domain 99.6 3.2E-14 7E-19 119.4 12.6 114 394-507 1-114 (115)
13 COG2905 Predicted signal-trans 99.6 2.3E-14 4.9E-19 142.6 12.4 209 386-602 6-216 (610)
14 PRK11753 DNA-binding transcrip 99.5 7.7E-14 1.7E-18 131.2 14.4 118 396-513 6-124 (211)
15 PF00027 cNMP_binding: Cyclic 99.5 9.1E-14 2E-18 111.4 10.4 91 412-502 1-91 (91)
16 smart00100 cNMP Cyclic nucleot 99.5 3.5E-13 7.6E-18 113.9 13.7 116 394-509 1-118 (120)
17 PRK10402 DNA-binding transcrip 99.5 1.2E-13 2.6E-18 130.8 11.3 111 403-513 24-134 (226)
18 COG0664 Crp cAMP-binding prote 99.5 7.7E-13 1.7E-17 124.7 13.8 124 390-513 3-126 (214)
19 PRK11161 fumarate/nitrate redu 99.5 9.4E-13 2E-17 125.9 14.2 124 389-513 15-139 (235)
20 KOG1113 cAMP-dependent protein 99.4 3.4E-13 7.4E-18 126.6 8.1 125 385-514 120-244 (368)
21 KOG1420 Ca2+-activated K+ chan 99.4 1.1E-13 2.3E-18 136.5 3.9 254 106-405 165-428 (1103)
22 PF07885 Ion_trans_2: Ion chan 99.4 6.1E-12 1.3E-16 97.0 10.7 55 265-319 24-78 (79)
23 KOG0614 cGMP-dependent protein 99.3 9.3E-13 2E-17 129.3 6.1 127 372-503 139-265 (732)
24 PLN02868 acyl-CoA thioesterase 99.3 9E-12 1.9E-16 128.6 13.0 113 386-501 7-119 (413)
25 KOG0614 cGMP-dependent protein 99.3 2.1E-12 4.5E-17 126.9 7.0 122 383-504 268-391 (732)
26 TIGR03697 NtcA_cyano global ni 99.3 1.4E-11 3.1E-16 113.9 11.0 96 418-513 1-98 (193)
27 PLN03192 Voltage-dependent pot 99.3 2.7E-09 5.8E-14 120.3 31.1 80 529-608 548-658 (823)
28 PRK09391 fixK transcriptional 99.3 2.7E-11 5.8E-16 115.0 11.8 105 406-513 34-138 (230)
29 KOG0512 Fetal globin-inducing 99.2 1.4E-11 3.1E-16 103.4 6.0 83 526-608 84-166 (228)
30 PRK13918 CRP/FNR family transc 99.2 8.6E-11 1.9E-15 109.6 11.4 98 409-513 5-104 (202)
31 KOG4412 26S proteasome regulat 99.2 1.4E-11 3.1E-16 104.3 5.1 85 524-608 91-175 (226)
32 KOG4412 26S proteasome regulat 99.2 3.5E-11 7.5E-16 102.0 6.1 79 529-608 129-207 (226)
33 KOG1113 cAMP-dependent protein 99.1 2E-10 4.4E-15 108.2 6.6 114 383-500 236-349 (368)
34 PF13857 Ank_5: Ankyrin repeat 99.1 1.1E-10 2.5E-15 83.0 3.1 51 558-608 1-52 (56)
35 KOG0509 Ankyrin repeat and DHH 99.0 3.5E-10 7.6E-15 114.8 6.7 80 529-608 68-148 (600)
36 PF12796 Ank_2: Ankyrin repeat 99.0 1.6E-09 3.5E-14 86.0 8.0 64 539-602 26-89 (89)
37 KOG4214 Myotrophin and similar 99.0 8.6E-10 1.9E-14 82.6 5.5 70 538-607 33-102 (117)
38 PRK10537 voltage-gated potassi 99.0 2E-08 4.3E-13 101.5 16.5 54 265-318 168-221 (393)
39 PHA02884 ankyrin repeat protei 98.9 6.8E-09 1.5E-13 100.5 8.9 73 536-608 67-140 (300)
40 KOG0514 Ankyrin repeat protein 98.9 8.2E-09 1.8E-13 97.4 9.1 72 536-607 337-409 (452)
41 PF13637 Ank_4: Ankyrin repeat 98.9 4.3E-09 9.4E-14 74.4 5.2 53 540-592 2-54 (54)
42 KOG0195 Integrin-linked kinase 98.8 4.6E-09 1E-13 95.7 4.9 80 529-608 24-103 (448)
43 PHA02741 hypothetical protein; 98.8 1.7E-08 3.6E-13 90.9 8.5 79 530-608 51-135 (169)
44 KOG3684 Ca2+-activated K+ chan 98.8 3E-06 6.5E-11 83.2 22.8 91 262-359 284-374 (489)
45 PF12796 Ank_2: Ankyrin repeat 98.7 2.5E-08 5.4E-13 79.1 7.0 62 543-608 1-62 (89)
46 KOG4177 Ankyrin [Cell wall/mem 98.7 1.1E-08 2.5E-13 112.8 6.6 79 530-608 531-609 (1143)
47 KOG0508 Ankyrin repeat protein 98.7 8.9E-09 1.9E-13 100.4 4.8 73 535-607 113-185 (615)
48 PHA02743 Viral ankyrin protein 98.7 1.7E-08 3.7E-13 90.3 6.3 78 530-607 84-163 (166)
49 KOG0509 Ankyrin repeat and DHH 98.7 1.4E-08 3E-13 103.4 6.0 71 538-608 111-181 (600)
50 PHA02791 ankyrin-like protein; 98.7 2.9E-08 6.2E-13 96.3 7.5 67 539-605 160-227 (284)
51 KOG0515 p53-interacting protei 98.7 1.7E-08 3.6E-13 99.5 5.4 71 532-602 576-646 (752)
52 KOG0195 Integrin-linked kinase 98.7 1.5E-08 3.2E-13 92.5 4.5 76 533-608 61-136 (448)
53 PHA02859 ankyrin repeat protei 98.7 3.8E-08 8.2E-13 91.7 7.4 78 531-608 115-195 (209)
54 KOG0502 Integral membrane anky 98.7 2.1E-08 4.6E-13 88.0 5.1 77 532-608 153-229 (296)
55 PHA02795 ankyrin-like protein; 98.7 3.4E-08 7.4E-13 99.7 7.1 70 539-608 188-257 (437)
56 PF13606 Ank_3: Ankyrin repeat 98.7 2.6E-08 5.5E-13 60.1 3.7 30 571-600 1-30 (30)
57 KOG2968 Predicted esterase of 98.7 2.6E-08 5.6E-13 104.4 5.8 114 401-514 499-612 (1158)
58 PHA02791 ankyrin-like protein; 98.7 6E-08 1.3E-12 94.1 8.0 67 540-606 62-128 (284)
59 PHA02878 ankyrin repeat protei 98.7 4.3E-08 9.4E-13 104.2 7.7 78 531-608 193-272 (477)
60 PHA02946 ankyin-like protein; 98.6 8.2E-08 1.8E-12 100.2 9.2 79 530-608 63-144 (446)
61 PHA02743 Viral ankyrin protein 98.6 7.7E-08 1.7E-12 86.1 7.7 77 532-608 50-131 (166)
62 PHA02859 ankyrin repeat protei 98.6 6.7E-08 1.5E-12 90.1 7.2 79 530-608 77-161 (209)
63 PHA02736 Viral ankyrin protein 98.6 3E-08 6.6E-13 87.8 4.1 70 538-607 54-128 (154)
64 PF00023 Ank: Ankyrin repeat H 98.6 5.6E-08 1.2E-12 60.6 4.2 33 571-603 1-33 (33)
65 PHA02884 ankyrin repeat protei 98.6 9.1E-08 2E-12 92.8 7.5 69 540-608 34-107 (300)
66 KOG0508 Ankyrin repeat protein 98.6 3E-08 6.4E-13 96.8 3.4 78 530-608 141-218 (615)
67 PHA03095 ankyrin-like protein; 98.6 1.4E-07 3E-12 100.5 8.5 78 531-608 214-293 (471)
68 PHA02741 hypothetical protein; 98.6 1E-07 2.3E-12 85.7 6.2 76 533-608 15-101 (169)
69 PHA03095 ankyrin-like protein; 98.6 1.9E-07 4.2E-12 99.3 9.3 79 530-608 74-155 (471)
70 PHA02875 ankyrin repeat protei 98.6 1.2E-07 2.6E-12 99.0 7.4 77 531-607 127-203 (413)
71 PHA02716 CPXV016; CPX019; EVM0 98.5 1.4E-07 2.9E-12 102.3 7.7 73 536-608 174-250 (764)
72 PHA02874 ankyrin repeat protei 98.5 1.4E-07 3E-12 99.1 7.6 78 531-608 149-226 (434)
73 PHA02798 ankyrin-like protein; 98.5 1.4E-07 3E-12 100.5 7.7 76 532-607 102-184 (489)
74 KOG0514 Ankyrin repeat protein 98.5 5.9E-08 1.3E-12 91.7 3.6 76 532-607 261-375 (452)
75 KOG0512 Fetal globin-inducing 98.5 2.9E-07 6.3E-12 77.9 7.0 69 540-608 64-133 (228)
76 PHA02875 ankyrin repeat protei 98.5 2.3E-07 4.9E-12 96.9 8.0 78 530-607 159-240 (413)
77 PHA02946 ankyin-like protein; 98.5 6.4E-07 1.4E-11 93.5 10.6 69 540-608 38-108 (446)
78 PHA03100 ankyrin repeat protei 98.5 2.9E-07 6.3E-12 98.2 7.9 69 540-608 216-286 (480)
79 KOG4214 Myotrophin and similar 98.5 2.2E-07 4.7E-12 69.9 4.6 66 542-608 5-70 (117)
80 PHA02730 ankyrin-like protein; 98.5 2.7E-07 5.8E-12 98.1 7.0 74 534-607 36-116 (672)
81 KOG2302 T-type voltage-gated C 98.5 1.5E-05 3.3E-10 84.6 19.3 92 57-160 1098-1203(1956)
82 PHA02878 ankyrin repeat protei 98.5 3.1E-07 6.7E-12 97.7 7.3 78 529-608 224-303 (477)
83 PHA02874 ankyrin repeat protei 98.4 3.6E-07 7.7E-12 96.0 7.5 75 532-608 183-257 (434)
84 PHA02795 ankyrin-like protein; 98.4 2.9E-07 6.2E-12 93.1 6.1 74 531-604 213-294 (437)
85 KOG3193 K+ channel subunit [In 98.4 3.8E-07 8.2E-12 90.5 6.2 170 105-316 92-268 (1087)
86 PF13857 Ank_5: Ankyrin repeat 98.4 2.6E-07 5.7E-12 65.6 3.7 50 530-579 7-56 (56)
87 PHA02716 CPXV016; CPX019; EVM0 98.4 4E-07 8.8E-12 98.7 6.8 79 530-608 308-402 (764)
88 KOG0510 Ankyrin repeat protein 98.4 3.9E-07 8.5E-12 95.1 6.4 77 531-607 333-412 (929)
89 PHA02792 ankyrin-like protein; 98.4 5.8E-07 1.3E-11 94.5 7.5 70 539-608 374-446 (631)
90 PHA02736 Viral ankyrin protein 98.4 8.6E-07 1.9E-11 78.5 6.9 70 531-600 83-154 (154)
91 PF01007 IRK: Inward rectifier 98.4 2.4E-06 5.1E-11 84.2 10.4 99 210-321 39-142 (336)
92 KOG0515 p53-interacting protei 98.3 7.5E-07 1.6E-11 88.2 6.5 66 543-608 554-619 (752)
93 PTZ00322 6-phosphofructo-2-kin 98.3 1E-06 2.2E-11 96.6 8.2 76 532-607 108-190 (664)
94 KOG0502 Integral membrane anky 98.3 5.6E-07 1.2E-11 79.2 4.4 71 538-608 192-262 (296)
95 PF08412 Ion_trans_N: Ion tran 98.3 5.7E-07 1.2E-11 66.8 3.7 42 60-101 33-74 (77)
96 KOG0505 Myosin phosphatase, re 98.3 6.2E-07 1.3E-11 89.6 5.1 72 537-608 196-267 (527)
97 PHA02798 ankyrin-like protein; 98.3 9.5E-07 2E-11 94.2 6.9 76 532-607 138-221 (489)
98 PHA03100 ankyrin repeat protei 98.3 1E-06 2.2E-11 94.1 6.8 76 531-606 133-210 (480)
99 KOG3676 Ca2+-permeable cation 98.3 2.1E-06 4.6E-11 90.2 7.7 73 536-608 181-276 (782)
100 KOG0505 Myosin phosphatase, re 98.2 1.2E-06 2.5E-11 87.6 5.0 77 532-608 66-142 (527)
101 KOG1710 MYND Zn-finger and ank 98.2 1.7E-06 3.7E-11 79.4 5.6 76 532-607 38-114 (396)
102 PHA02989 ankyrin repeat protei 98.2 2.1E-06 4.6E-11 91.6 7.2 71 537-607 143-220 (494)
103 PHA02917 ankyrin-like protein; 98.2 2.1E-06 4.6E-11 93.4 7.3 58 551-608 431-488 (661)
104 PHA02876 ankyrin repeat protei 98.2 2.8E-06 6.1E-11 94.6 8.4 72 537-608 143-214 (682)
105 PTZ00322 6-phosphofructo-2-kin 98.2 2.8E-06 6.1E-11 93.1 7.8 69 540-608 83-151 (664)
106 PHA02989 ankyrin repeat protei 98.2 3.9E-06 8.4E-11 89.6 8.4 79 530-608 99-184 (494)
107 KOG0818 GTPase-activating prot 98.2 4.2E-06 9E-11 82.4 7.4 74 535-608 129-203 (669)
108 PHA02876 ankyrin repeat protei 98.2 2.7E-06 5.9E-11 94.7 7.0 77 532-608 401-479 (682)
109 KOG0507 CASK-interacting adapt 98.1 2.2E-06 4.9E-11 88.9 4.8 74 535-608 78-151 (854)
110 PHA02730 ankyrin-like protein; 98.1 4.1E-06 8.9E-11 89.2 6.9 56 553-608 443-499 (672)
111 PHA02917 ankyrin-like protein; 98.1 4E-06 8.6E-11 91.4 6.8 80 529-608 126-232 (661)
112 PF13637 Ank_4: Ankyrin repeat 98.1 2.3E-06 4.9E-11 60.4 3.0 37 572-608 1-37 (54)
113 KOG4177 Ankyrin [Cell wall/mem 98.1 3.9E-06 8.4E-11 93.3 5.8 76 533-608 501-576 (1143)
114 COG0666 Arp FOG: Ankyrin repea 98.1 7.7E-06 1.7E-10 77.5 7.3 79 530-608 97-183 (235)
115 KOG0510 Ankyrin repeat protein 98.1 9E-06 1.9E-10 85.3 7.8 79 529-607 296-379 (929)
116 TIGR00870 trp transient-recept 98.1 3.2E-06 6.8E-11 95.0 4.5 72 537-608 126-211 (743)
117 cd00204 ANK ankyrin repeats; 98.0 2.4E-05 5.2E-10 66.0 7.2 76 533-608 34-109 (126)
118 KOG2968 Predicted esterase of 97.9 3.4E-05 7.3E-10 81.8 9.0 108 406-513 111-225 (1158)
119 PHA02792 ankyrin-like protein; 97.9 5.8E-05 1.3E-09 79.8 10.1 67 542-608 342-413 (631)
120 KOG0506 Glutaminase (contains 97.9 1.1E-05 2.5E-10 79.0 4.4 77 532-608 499-576 (622)
121 KOG0783 Uncharacterized conser 97.9 7E-06 1.5E-10 85.8 2.9 77 532-608 45-122 (1267)
122 cd00204 ANK ankyrin repeats; 97.9 4.2E-05 9.2E-10 64.5 7.2 72 537-608 5-76 (126)
123 KOG1418 Tandem pore domain K+ 97.8 0.00015 3.3E-09 76.2 11.8 55 266-320 116-170 (433)
124 KOG4404 Tandem pore domain K+ 97.6 0.00022 4.8E-09 67.2 7.9 55 265-319 186-248 (350)
125 KOG3827 Inward rectifier K+ ch 97.6 0.00051 1.1E-08 66.5 10.2 100 209-321 66-170 (400)
126 KOG3676 Ca2+-permeable cation 97.6 0.00011 2.5E-09 77.6 6.3 70 539-608 240-311 (782)
127 KOG0511 Ankyrin repeat protein 97.6 0.00017 3.7E-09 69.0 6.7 66 540-605 37-102 (516)
128 COG0666 Arp FOG: Ankyrin repea 97.5 0.00021 4.6E-09 67.5 7.4 74 535-608 69-150 (235)
129 TIGR00870 trp transient-recept 97.5 0.0004 8.7E-09 78.2 9.4 33 570-602 126-158 (743)
130 KOG0522 Ankyrin repeat protein 97.5 0.00014 3.1E-09 72.9 5.0 66 528-593 44-109 (560)
131 PF04831 Popeye: Popeye protei 97.4 0.005 1.1E-07 52.0 12.2 105 397-506 14-125 (153)
132 PRK11832 putative DNA-binding 97.3 0.002 4.4E-08 58.3 10.4 95 403-501 15-110 (207)
133 PLN03223 Polycystin cation cha 97.3 0.046 1E-06 61.8 22.5 56 69-124 1171-1234(1634)
134 KOG4404 Tandem pore domain K+ 97.1 8E-05 1.7E-09 70.1 -0.8 50 266-315 81-130 (350)
135 KOG1710 MYND Zn-finger and ank 97.1 0.00092 2E-08 61.9 5.9 67 541-607 14-81 (396)
136 KOG0522 Ankyrin repeat protein 97.1 0.00084 1.8E-08 67.6 5.9 68 541-608 22-91 (560)
137 KOG0705 GTPase-activating prot 97.1 0.00094 2E-08 67.6 6.1 69 539-607 624-696 (749)
138 KOG0507 CASK-interacting adapt 97.1 0.00072 1.6E-08 70.9 5.4 79 530-608 40-118 (854)
139 KOG2301 Voltage-gated Ca2+ cha 97.1 0.014 3E-07 68.6 16.0 106 105-226 475-582 (1592)
140 KOG0705 GTPase-activating prot 97.0 0.0011 2.4E-08 67.2 5.3 65 535-599 657-721 (749)
141 KOG0782 Predicted diacylglycer 96.9 0.001 2.2E-08 67.1 4.8 74 535-608 895-970 (1004)
142 PF00023 Ank: Ankyrin repeat H 96.8 0.0016 3.4E-08 40.2 3.3 32 539-570 2-33 (33)
143 PF13606 Ank_3: Ankyrin repeat 96.8 0.0015 3.3E-08 39.2 3.0 29 539-567 2-30 (30)
144 KOG2301 Voltage-gated Ca2+ cha 96.6 0.061 1.3E-06 63.6 16.7 137 77-228 843-985 (1592)
145 KOG0818 GTPase-activating prot 96.6 0.0031 6.7E-08 62.8 5.2 57 537-593 165-221 (669)
146 KOG0521 Putative GTPase activa 96.6 0.0016 3.4E-08 71.6 3.5 72 537-608 654-725 (785)
147 KOG3542 cAMP-regulated guanine 96.5 0.0063 1.4E-07 62.9 7.2 112 383-499 277-390 (1283)
148 smart00248 ANK ankyrin repeats 96.2 0.0089 1.9E-07 34.8 3.8 29 571-599 1-29 (30)
149 KOG2384 Major histocompatibili 96.0 0.025 5.4E-07 49.5 6.8 70 531-600 4-74 (223)
150 KOG0506 Glutaminase (contains 95.9 0.0056 1.2E-07 60.8 3.2 66 531-596 531-597 (622)
151 KOG3542 cAMP-regulated guanine 95.7 0.012 2.7E-07 60.8 4.7 105 373-490 23-127 (1283)
152 KOG2505 Ankyrin repeat protein 95.4 0.027 5.9E-07 56.5 5.7 59 550-608 402-466 (591)
153 KOG1418 Tandem pore domain K+ 95.1 0.0046 9.9E-08 65.0 -0.8 47 265-311 242-296 (433)
154 KOG4369 RTK signaling protein 95.1 0.015 3.3E-07 63.8 3.1 72 536-607 754-826 (2131)
155 KOG4369 RTK signaling protein 94.9 0.035 7.6E-07 61.1 5.0 61 541-601 826-886 (2131)
156 KOG2302 T-type voltage-gated C 94.8 0.15 3.3E-06 55.5 9.3 136 76-226 1443-1590(1956)
157 KOG0783 Uncharacterized conser 94.5 0.0093 2E-07 63.4 -0.2 45 564-608 44-89 (1267)
158 KOG0498 K+-channel ERG and rel 93.4 8.1 0.00018 42.5 19.0 41 370-410 371-416 (727)
159 KOG3599 Ca2+-modulated nonsele 92.4 16 0.00035 41.0 20.1 22 103-124 498-519 (798)
160 KOG3609 Receptor-activated Ca2 91.6 9.8 0.00021 41.8 16.6 130 177-320 474-609 (822)
161 KOG0520 Uncharacterized conser 91.4 0.067 1.5E-06 59.0 0.6 41 560-600 629-669 (975)
162 KOG3614 Ca2+/Mg2+-permeable ca 90.7 14 0.00031 42.8 17.4 89 70-166 790-878 (1381)
163 PF08016 PKD_channel: Polycyst 90.7 9.4 0.0002 39.9 15.7 23 102-124 241-263 (425)
164 KOG0782 Predicted diacylglycer 90.0 0.77 1.7E-05 47.1 6.4 88 507-594 902-989 (1004)
165 PF00060 Lig_chan: Ligand-gate 89.4 0.62 1.3E-05 40.4 4.9 58 262-320 41-98 (148)
166 KOG3609 Receptor-activated Ca2 88.6 0.92 2E-05 49.3 6.2 60 542-601 91-160 (822)
167 COG4709 Predicted membrane pro 86.3 5.3 0.00012 35.3 8.4 76 328-405 4-85 (195)
168 KOG0521 Putative GTPase activa 85.3 0.87 1.9E-05 50.7 4.0 55 554-608 636-692 (785)
169 KOG4440 NMDA selective glutama 83.9 2.9 6.3E-05 43.8 6.6 96 212-319 572-667 (993)
170 PF00520 Ion_trans: Ion transp 83.5 10 0.00022 34.3 9.9 33 201-233 92-124 (200)
171 KOG2505 Ankyrin repeat protein 82.5 1 2.2E-05 45.7 2.8 46 535-580 426-471 (591)
172 KOG1053 Glutamate-gated NMDA-t 81.7 20 0.00043 39.8 11.9 33 286-318 630-662 (1258)
173 PF08006 DUF1700: Protein of u 80.3 10 0.00022 34.2 8.4 56 328-385 4-65 (181)
174 PLN03223 Polycystin cation cha 79.7 1.4E+02 0.003 35.5 18.1 16 145-160 1208-1224(1634)
175 smart00248 ANK ankyrin repeats 76.9 3.6 7.9E-05 22.8 3.1 27 540-566 3-29 (30)
176 PF07883 Cupin_2: Cupin domain 75.3 8.6 0.00019 28.1 5.4 44 413-462 3-47 (71)
177 PF06128 Shigella_OspC: Shigel 73.9 7 0.00015 35.8 5.1 52 546-597 224-279 (284)
178 smart00835 Cupin_1 Cupin. This 71.8 12 0.00027 32.2 6.3 55 410-464 32-87 (146)
179 KOG1052 Glutamate-gated kainat 71.1 21 0.00046 39.7 9.5 52 268-320 384-435 (656)
180 KOG3300 NADH:ubiquinone oxidor 69.2 15 0.00032 30.3 5.4 44 331-374 62-106 (146)
181 PF14377 DUF4414: Domain of un 66.7 12 0.00027 30.3 4.8 42 342-383 52-105 (108)
182 PF05899 Cupin_3: Protein of u 66.5 12 0.00026 28.0 4.3 30 429-463 26-55 (74)
183 PHA01757 hypothetical protein 64.0 37 0.00081 25.2 6.1 47 289-335 4-50 (98)
184 KOG0501 K+-channel KCNQ [Inorg 63.3 2.1E+02 0.0046 30.5 16.4 49 369-417 499-552 (971)
185 PRK13290 ectC L-ectoine syntha 57.3 61 0.0013 27.1 7.5 69 411-488 38-106 (125)
186 PRK09108 type III secretion sy 54.3 2.1E+02 0.0046 28.9 12.0 57 294-353 181-241 (353)
187 KOG1054 Glutamate-gated AMPA-t 53.3 14 0.00029 38.9 3.4 53 266-319 596-648 (897)
188 PF02037 SAP: SAP domain; Int 52.9 33 0.00073 21.2 3.9 26 330-355 5-35 (35)
189 COG1422 Predicted membrane pro 51.3 52 0.0011 29.7 6.2 40 303-342 49-92 (201)
190 TIGR03037 anthran_nbaC 3-hydro 49.4 65 0.0014 28.1 6.5 63 422-492 43-105 (159)
191 PRK12721 secretion system appa 48.7 2.9E+02 0.0063 27.9 11.9 22 332-353 218-239 (349)
192 KOG1545 Voltage-gated shaker-l 48.1 37 0.0008 33.5 5.2 12 152-163 256-267 (507)
193 COG0662 {ManC} Mannose-6-phosp 48.1 54 0.0012 27.4 5.8 48 409-462 37-85 (127)
194 PF08285 DPM3: Dolichol-phosph 48.0 1.3E+02 0.0029 23.5 8.9 41 304-344 46-90 (91)
195 PF06295 DUF1043: Protein of u 46.9 1.1E+02 0.0024 25.7 7.4 42 310-357 11-54 (128)
196 PRK13109 flhB flagellar biosyn 46.4 3.3E+02 0.0072 27.6 12.1 22 332-353 227-248 (358)
197 PF13314 DUF4083: Domain of un 46.0 1E+02 0.0022 21.6 6.8 15 326-340 43-57 (58)
198 PRK04190 glucose-6-phosphate i 45.9 91 0.002 28.3 7.2 52 411-463 71-131 (191)
199 COG1917 Uncharacterized conser 45.5 53 0.0012 27.6 5.5 50 410-465 45-95 (131)
200 PRK05702 flhB flagellar biosyn 43.8 3.6E+02 0.0079 27.3 12.0 22 332-353 225-246 (359)
201 KOG0500 Cyclic nucleotide-gate 43.0 4.2E+02 0.0091 27.8 13.0 76 348-440 249-348 (536)
202 COG3718 IolB Uncharacterized e 42.9 87 0.0019 29.0 6.4 73 409-491 30-111 (270)
203 KOG0520 Uncharacterized conser 42.6 23 0.00051 40.0 3.4 63 532-594 634-702 (975)
204 PRK12468 flhB flagellar biosyn 42.3 4E+02 0.0087 27.4 12.0 22 332-353 225-246 (386)
205 TIGR00328 flhB flagellar biosy 42.2 3.8E+02 0.0082 27.1 12.0 22 332-353 218-239 (347)
206 PRK08156 type III secretion sy 41.7 3.9E+02 0.0085 27.1 12.0 22 332-353 213-234 (361)
207 TIGR03404 bicupin_oxalic bicup 41.6 72 0.0016 32.5 6.6 53 410-463 69-121 (367)
208 KOG3713 Voltage-gated K+ chann 41.6 4.2E+02 0.0092 27.8 11.8 25 103-127 273-297 (477)
209 KOG0499 Cyclic nucleotide-gate 40.2 5.1E+02 0.011 28.0 13.5 26 291-316 424-449 (815)
210 TIGR01404 FlhB_rel_III type II 38.6 4.3E+02 0.0093 26.6 12.0 22 332-353 217-238 (342)
211 PF00190 Cupin_1: Cupin; Inte 38.3 64 0.0014 27.6 5.0 55 411-465 37-97 (144)
212 COG4792 EscU Type III secretor 37.6 4E+02 0.0087 26.0 11.3 14 274-287 165-178 (349)
213 COG3837 Uncharacterized conser 36.7 60 0.0013 28.1 4.2 50 411-466 45-96 (161)
214 PF10011 DUF2254: Predicted me 36.7 1.7E+02 0.0037 29.8 8.5 57 263-319 98-154 (371)
215 PRK13264 3-hydroxyanthranilate 35.4 74 0.0016 28.3 4.7 69 416-492 42-111 (177)
216 PF08475 Baculo_VP91_N: Viral 34.3 69 0.0015 28.6 4.4 25 318-342 19-43 (183)
217 KOG0511 Ankyrin repeat protein 34.3 1.6E+02 0.0034 29.6 7.1 54 528-582 58-111 (516)
218 PF14377 DUF4414: Domain of un 33.8 1.1E+02 0.0023 24.9 5.2 46 342-387 8-68 (108)
219 PF07697 7TMR-HDED: 7TM-HD ext 33.6 43 0.00094 31.1 3.4 58 371-429 147-207 (222)
220 TIGR03404 bicupin_oxalic bicup 32.8 1.2E+02 0.0027 30.8 6.6 52 410-462 247-299 (367)
221 smart00511 ORANGE Orange domai 32.1 1.5E+02 0.0032 19.4 5.0 36 325-360 5-41 (45)
222 PRK11677 hypothetical protein; 31.9 3E+02 0.0065 23.4 7.6 41 310-356 15-57 (134)
223 PRK12772 bifunctional flagella 31.6 6E+02 0.013 28.0 12.0 22 332-353 481-502 (609)
224 COG5559 Uncharacterized conser 31.5 56 0.0012 22.7 2.6 23 340-362 8-30 (65)
225 PF07077 DUF1345: Protein of u 31.3 3.9E+02 0.0085 24.0 8.9 48 265-312 132-179 (180)
226 TIGR00933 2a38 potassium uptak 31.1 1.8E+02 0.0039 29.9 7.7 43 264-306 230-274 (390)
227 TIGR00048 radical SAM enzyme, 30.9 3.5E+02 0.0076 27.4 9.5 51 330-383 13-63 (355)
228 PRK14470 ribosomal RNA large s 29.9 4E+02 0.0086 26.8 9.6 48 332-383 7-54 (336)
229 KOG2378 cAMP-regulated guanine 29.4 52 0.0011 33.6 3.1 44 458-501 1-45 (573)
230 PRK06298 type III secretion sy 27.8 6.6E+02 0.014 25.5 12.0 22 332-353 219-240 (356)
231 PRK14461 ribosomal RNA large s 27.7 4E+02 0.0087 27.1 9.0 51 330-383 14-64 (371)
232 PRK11171 hypothetical protein; 27.5 1.6E+02 0.0035 28.4 6.2 49 409-463 185-234 (266)
233 PRK14459 ribosomal RNA large s 26.8 5E+02 0.011 26.5 9.7 51 331-384 29-79 (373)
234 TIGR00933 2a38 potassium uptak 26.7 6.3E+02 0.014 26.0 10.7 46 265-310 128-179 (390)
235 smart00513 SAP Putative DNA-bi 26.4 1.1E+02 0.0023 18.8 3.1 24 331-354 6-34 (35)
236 PF06212 GRIM-19: GRIM-19 prot 26.2 3.5E+02 0.0076 22.8 7.0 30 344-373 72-101 (130)
237 COG2140 Thermophilic glucose-6 25.6 2.2E+02 0.0047 26.2 6.1 38 423-461 98-135 (209)
238 PF07527 Hairy_orange: Hairy O 23.4 2.2E+02 0.0047 18.5 4.7 35 324-358 4-39 (43)
239 PF14937 DUF4500: Domain of un 23.2 1.2E+02 0.0026 23.2 3.3 23 298-320 38-60 (86)
240 PRK11171 hypothetical protein; 23.2 2.9E+02 0.0062 26.7 7.0 47 411-463 64-112 (266)
241 PHA02909 hypothetical protein; 22.9 79 0.0017 21.6 2.1 23 277-299 14-36 (72)
242 PRK14457 ribosomal RNA large s 22.8 5E+02 0.011 26.2 8.8 49 331-382 9-57 (345)
243 PF12973 Cupin_7: ChrR Cupin-l 22.0 1.7E+02 0.0038 22.6 4.4 63 410-487 26-88 (91)
244 TIGR00934 2a38euk potassium up 22.0 5.7E+02 0.012 28.9 9.5 62 207-284 449-510 (800)
245 PRK09943 DNA-binding transcrip 20.4 2.6E+02 0.0056 25.1 5.8 44 414-463 113-157 (185)
246 COG3450 Predicted enzyme of th 20.2 3.2E+02 0.007 22.5 5.5 30 429-463 64-93 (116)
247 PF06249 EutQ: Ethanolamine ut 20.1 1.7E+02 0.0037 25.4 4.1 49 429-488 96-144 (152)
No 1
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.7e-86 Score=739.40 Aligned_cols=539 Identities=35% Similarity=0.620 Sum_probs=479.0
Q ss_pred ccccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccCCC-cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEe
Q 007323 59 HFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLS-KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLI 137 (608)
Q Consensus 59 ~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~-~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i 137 (608)
...+.|+|+|.++++++|+.+++++++|+++++|+.++|....+ ..++++|++++++|++|++++|+|+|++++++.+|
T Consensus 47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV 126 (823)
T PLN03192 47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLV 126 (823)
T ss_pred cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEE
Confidence 34567999999999999999999999999999999999965433 35889999999999999999999999999999999
Q ss_pred eccHHHHHHHhhccchhHhhhhccHHHHHhhc-Cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007323 138 CKRTPIALRYLRSSFIIDLFSCMPWDLIYKAS-GR---KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLI 213 (608)
Q Consensus 138 ~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~-~~---~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (608)
.||++|+++|+|+||++|+++++|++++.... +. ...+.+++++|++|+.|+.+++.++++....++...++++++
T Consensus 127 ~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli 206 (823)
T PLN03192 127 RDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLL 206 (823)
T ss_pred eCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999998764332 22 234678889999999999999999998888777778999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhH
Q 007323 214 AVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREM 293 (608)
Q Consensus 214 ~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~ 293 (608)
+.+++++||+||+||+++...+. .+.+|+... +.++.+.+++.+|+.|+||+++|||||||||++|.|..|+
T Consensus 207 ~~~l~~~H~~aC~~y~i~~~~~~--~~~~Wi~~~------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~ 278 (823)
T PLN03192 207 SVTLFLVHCAGCLYYLIADRYPH--QGKTWIGAV------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEM 278 (823)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC--CCCchHHHh------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchH
Confidence 99999999999999999865433 345898642 1345567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc-cccHHHHHhh
Q 007323 294 VFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQD 371 (608)
Q Consensus 294 ~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~-~~~~~~~l~~ 371 (608)
++++++|++|++++||++|++++++.+ ..++.+|+++++.+++||+++++|++||+||++|++++|+. +.++++++++
T Consensus 279 i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~ 358 (823)
T PLN03192 279 IFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQ 358 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 999999999999999999999999988 66778999999999999999999999999999999999975 5678899999
Q ss_pred CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcee
Q 007323 372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451 (608)
Q Consensus 372 lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~ 451 (608)
||++||.++..+++.+.++++++|++++++++.+++..++++.|.|||.|+.+||.++++|||.+|.|++.. ..+|++.
T Consensus 359 Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~-~~~~~e~ 437 (823)
T PLN03192 359 LPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIID-SEGEKER 437 (823)
T ss_pred cCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEE-ecCCcce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4567888
Q ss_pred eeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhccCcchhhh--hhhccccc
Q 007323 452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRL--KQLQSDIT 529 (608)
Q Consensus 452 ~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~~~~~~~~--~~l~~~~~ 529 (608)
++..+++|++|||.+++.+.|++++++|.+.|+++.+++++|.++++++|++...+++++.++....... ..+..+..
T Consensus 438 ~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~ 517 (823)
T PLN03192 438 VVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNG 517 (823)
T ss_pred eeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcc
Confidence 8999999999999999999999999999999999999999999999999999999999988743211110 00000111
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....+.....+++.||..|+.+.++.+++.|+++|..|..|+||||.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 518 --~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~Tp 594 (823)
T PLN03192 518 --GEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA 594 (823)
T ss_pred --cccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCH
Confidence 11223345678999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-86 Score=683.73 Aligned_cols=545 Identities=35% Similarity=0.570 Sum_probs=462.0
Q ss_pred ccccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccC----------CCcCeehHHHHHHHHHHHHHHhhceeeE
Q 007323 59 HFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRG----------LSKNLYVLDIVGQIAFLFDIVLQFCLAY 128 (608)
Q Consensus 59 ~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~~f~~d~~~~f~t~~ 128 (608)
.....++++|.|++++.|+.+++++++|++++.|+.++|... ....+.++|.++|++|++||+++|+|+|
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay 142 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY 142 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence 444556999999999999999999999999999999999765 4567899999999999999999999999
Q ss_pred EeCCCcEEeeccHHHHHHHhhccchhHhhhhccHHHHHhhcC---------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 129 RDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASG---------RKEAVRYLLWIRLYRVRKVSQFFHKMEKD 199 (608)
Q Consensus 129 ~~~~~~~~i~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~---------~~~~~~~l~l~rl~r~~r~~~~~~~~~~~ 199 (608)
+++.+.++|.||++|++||+|+||++|++|++|++.++.... ......++.+.||+|+.|+.++++++++.
T Consensus 143 v~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~ 222 (727)
T KOG0498|consen 143 VDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKD 222 (727)
T ss_pred ECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998999999999999999999999999999998876432 22467788899999999999999999988
Q ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-ceecccccCCCCccc----ccccchHHHHHHHHHH
Q 007323 200 IRINY--MFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY-TWIGSLKMGDYSYAD----FREIGFWKSYITSMYA 272 (608)
Q Consensus 200 ~~~~~--~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~----~~~~~~~~~Y~~s~y~ 272 (608)
...++ .+.-+.++++.+++++||+||+||+++...+...... +|+..... .....+ +...+...+|++|+||
T Consensus 223 ~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~-~~~~~~~~~~fg~~s~~~kY~~aLyw 301 (727)
T KOG0498|consen 223 TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR-LLSCYNLSFTFGIYSLALKYVYALYW 301 (727)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc-ccccCcccccccchhHHHHHHHHHHH
Confidence 77765 2334778999999999999999999998887655555 99987542 222222 6667788899999999
Q ss_pred HHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 007323 273 SVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQI 351 (608)
Q Consensus 273 ~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv 351 (608)
+++||||+||||.+|.+..|++|+|++|++|.++||++||++.+++++ .++.++|+.+++++.+||++++||++||+||
T Consensus 302 ~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi 381 (727)
T KOG0498|consen 302 GLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRI 381 (727)
T ss_pred HhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7889999999999999999999999999999
Q ss_pred HHHHHHHHhc--cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccC
Q 007323 352 IGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVD 429 (608)
Q Consensus 352 ~~y~~~~~~~--~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~ 429 (608)
++|++|+|.. +.+|++++++||+.||++|+.++|.++++++|+|+++++..+.+++.++++..|+|||+|++|||+.+
T Consensus 382 ~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~ 461 (727)
T KOG0498|consen 382 RRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVT 461 (727)
T ss_pred HHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccc
Confidence 9999999975 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec-chhhhcC-CCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323 430 QLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG-EVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 430 ~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG-e~~~~~~-~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i 507 (608)
.||||.+|.+++...+ +|.+.....+++||+|| |+..... .|.+.||+|.+.|+++.+.+++|..+++.+|.++..+
T Consensus 462 ~myFI~rG~le~~~~~-~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~ 540 (727)
T KOG0498|consen 462 DMYFIVRGSLESITTD-GGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKF 540 (727)
T ss_pred eeEEEEeeeEEEEEcc-CCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHH
Confidence 9999999999998754 45667889999999999 7777766 7889999999999999999999999999999999999
Q ss_pred HHH---HhccCcchhhhhhhcccccccccch-hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC
Q 007323 508 LTN---LLQGKESDLRLKQLQSDITFHISKH-EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG 583 (608)
Q Consensus 508 l~~---l~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~ 583 (608)
+++ +.......-.....+....-+...+ ..+.......++..++.......+..+..++..+.+|.+|+|.++..+
T Consensus 541 l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 620 (727)
T KOG0498|consen 541 LQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRG 620 (727)
T ss_pred HHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccC
Confidence 884 3332211111111111111111110 111111111122223333455567778888888999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCcCCCC
Q 007323 584 YEEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 584 ~~~~v~~Ll~~ga~~~~~~~~g 605 (608)
..++...++.++++++..+.+|
T Consensus 621 ~~~~~~~~~~~~~~p~f~~~~~ 642 (727)
T KOG0498|consen 621 SSDCALLLLQKPADPDFSDAEG 642 (727)
T ss_pred ccccccccCCCCCCCCcccccc
Confidence 9999999999999999887654
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-67 Score=506.21 Aligned_cols=416 Identities=23% Similarity=0.419 Sum_probs=367.7
Q ss_pred HHHHHHHHHHhchheeeccC---CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHh
Q 007323 81 LIWAVYSSIFTPVEFGFFRG---LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDL 156 (608)
Q Consensus 81 ~~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl 156 (608)
.+.++|++++++...+|+.- ....|..+|+++|++|++|++++.++||.++| .+|.|-++.++||+.+ .|.+|+
T Consensus 4 s~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~hY~~s~~f~lD~ 81 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRKHYVHSTQFKLDV 81 (536)
T ss_pred EEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHHHHHHhhhhhhhh
Confidence 44578999999998888642 23458899999999999999999999999988 8999999999999998 789999
Q ss_pred hhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007323 157 FSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP 236 (608)
Q Consensus 157 ~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~ 236 (608)
+|++|+++++...+.... .|++|++|+.|+..++.+.+.....+.. .++.+++.++++++||.||++|+++...+.
T Consensus 82 l~liP~D~l~~~~~~~~~---~r~nRllk~yRl~~F~~rTetrT~~Pn~-fri~~lv~~~~ilfHWNaClYf~iS~~~g~ 157 (536)
T KOG0500|consen 82 LSLIPLDLLLFKDGSASL---ERLNRLLKIYRLFEFFDRTETRTTYPNA-FRISKLVHYCLILFHWNACLYFLISKAIGF 157 (536)
T ss_pred hhhcchhHHhhcCCcchH---HHHHHHHHHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHHHHHhhHHHHhhhHhcCc
Confidence 999999999877766544 4578888888899999988877666554 599999999999999999999999987665
Q ss_pred CCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 237 EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316 (608)
Q Consensus 237 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~ 316 (608)
..+ +|.... +.+..+......++..+|+.|+||+..||||+| -..+|.+..|.+|.++-.++|+++||.++|++++
T Consensus 158 ~~d--~wvY~~-i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGs 233 (536)
T KOG0500|consen 158 TTD--DWVYPK-INDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGS 233 (536)
T ss_pred ccc--ccccCC-ccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhH
Confidence 444 365532 222222222223488999999999999999999 7789999999999999999999999999999999
Q ss_pred HHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhcc--ccHHHHHhhCCHHHHHHHHHHHhHhhhcccc
Q 007323 317 LIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEASVLQDIPISIRAKISQTLYLPYIEKVP 393 (608)
Q Consensus 317 ~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~ 393 (608)
++++ +..+.+||++|+.+++||+.+++|..||.||.+||.|.|.++ .+|+++++.||+.|+.||+.+++.+.|++++
T Consensus 234 mVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~ 313 (536)
T KOG0500|consen 234 MVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR 313 (536)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence 9999 777899999999999999999999999999999999999654 5799999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhc----
Q 007323 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC---- 469 (608)
Q Consensus 394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~---- 469 (608)
+|+++.+.++.++..+++++.|.|||+|++.||.+.+||+|.+|.+++.. +||.+ +...+.+|++|||++++.
T Consensus 314 iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~--dDg~t-~~~~L~~G~~FGEisIlni~g~ 390 (536)
T KOG0500|consen 314 IFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA--DDGVT-VFVTLKAGSVFGEISILNIKGN 390 (536)
T ss_pred HHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe--cCCcE-EEEEecCCceeeeeEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999876 56654 678999999999999874
Q ss_pred --CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHH
Q 007323 470 --NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509 (608)
Q Consensus 470 --~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~ 509 (608)
|..|++++++++++.++.++++++.+.+++||+....+.+
T Consensus 391 ~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~ 432 (536)
T KOG0500|consen 391 KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEE 432 (536)
T ss_pred ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHH
Confidence 5678999999999999999999999999999998887763
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-64 Score=486.95 Aligned_cols=443 Identities=22% Similarity=0.400 Sum_probs=382.7
Q ss_pred cccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccCC--CcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEe
Q 007323 60 FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL--SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLI 137 (608)
Q Consensus 60 ~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~--~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i 137 (608)
+.++.+|--.+.|+.+|+++++++.+|+++++|+.++|.... ...|..+|.++|+||++||+++|+|.|+.+| |++|
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPg-GEVv 282 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPG-GEVV 282 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCC-Ccee
Confidence 344556666789999999999999999999999999998654 3358899999999999999999999999987 5999
Q ss_pred eccHHHHHHHhhccchhHhhhhccHHHHHhhcCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007323 138 CKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGR----KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLI 213 (608)
Q Consensus 138 ~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~~----~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (608)
.||+.|+.+|+|+||+||++|++|++++..+.+. .+.+..|++.||+|+-|+.|-++.. +.|....++.++
T Consensus 283 sdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~Y-----lEYGAA~LvLLl 357 (971)
T KOG0501|consen 283 SDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHY-----LEYGAAVLVLLL 357 (971)
T ss_pred cChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHH
Confidence 9999999999999999999999999999876543 3466778888888888887766543 235555788889
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCC-----CCCceecccccC---CCCccc-----c-cccchHHHHHHHHHHHHHHhhc
Q 007323 214 AVELYCSHIAACIFYYLATTLPPEQ-----EGYTWIGSLKMG---DYSYAD-----F-REIGFWKSYITSMYASVVTMTT 279 (608)
Q Consensus 214 ~~~~~~~h~~ac~~~~~~~~~~~~~-----~~~~w~~~~~~~---~~~~~~-----~-~~~~~~~~Y~~s~y~~~~t~tt 279 (608)
+.+.++.||+||+||.++..+..+. ...+|+-....+ .|+|.. . ...+--..|+.|+||+++.|||
T Consensus 358 C~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mtt 437 (971)
T KOG0501|consen 358 CVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTT 437 (971)
T ss_pred HHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhc
Confidence 9999999999999999987543221 224787655332 233321 0 1123346799999999999999
Q ss_pred cccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 007323 280 VGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQ 358 (608)
Q Consensus 280 vGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~ 358 (608)
||||++.|.|..|++|++.+|++|.++||.++|+++.++++ .++...|.+.++++.+||+-.++|+.|.+||.+|..-.
T Consensus 438 vGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVST 517 (971)
T KOG0501|consen 438 VGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVST 517 (971)
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 78889999999999999999999999999999999999
Q ss_pred Hh--ccccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEe
Q 007323 359 YE--SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCL 436 (608)
Q Consensus 359 ~~--~~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~ 436 (608)
|. ++.+.++.+...|+.+|.+|+.+++.+.+..+|.|+--++..++.|+..++..+..|||.|++.|+..+.++||++
T Consensus 518 WaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVs 597 (971)
T KOG0501|consen 518 WAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVS 597 (971)
T ss_pred hhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEe
Confidence 96 5778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeccCCceeeeEEeCCCCeecchhhhcC--CCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 437 GKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 437 G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
|++++...+ .+++.+++||+||..-.-.+ ..+.++++|+++|.+..|.++.+.++++-|..+...+.+++..
T Consensus 598 GSLEVIQDD-----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~L 671 (971)
T KOG0501|consen 598 GSLEVIQDD-----EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTL 671 (971)
T ss_pred cceEEeecC-----cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceee
Confidence 999998621 27899999999999854332 2346899999999999999999999999999988888777643
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-60 Score=461.32 Aligned_cols=421 Identities=24% Similarity=0.456 Sum_probs=378.0
Q ss_pred cceEECCCC-hhHHHHHHHHHHHHHHHHHHhchheeeccCCCcC---eehHHHHHHHHHHHHHH-hhceeeEEeCCCcEE
Q 007323 62 RNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKN---LYVLDIVGQIAFLFDIV-LQFCLAYRDSQTYRL 136 (608)
Q Consensus 62 ~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~---~~~~~~~~~~~f~~d~~-~~f~t~~~~~~~~~~ 136 (608)
..-.|+|.+ +++..|..++.++..+++|++|+..+|+.+..++ |++.|++||+|+++|++ ++-+..|...| .+
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG--~~ 293 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG--DI 293 (815)
T ss_pred CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc--eE
Confidence 345789998 9999999999999999999999999998776543 78999999999999985 55677777665 79
Q ss_pred eeccHHHHHHHhhc-cchhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 007323 137 ICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAV 215 (608)
Q Consensus 137 i~~~~~i~~~yl~~-~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (608)
|.|.+..++||+++ .|-+|++|++|+++.|..+|....+ |+.|++++..++.+++.+++.+...+ +.|+++.+.+
T Consensus 294 ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~w---R~~R~lK~~sF~e~~~~Le~i~s~~y-~~RV~rT~~Y 369 (815)
T KOG0499|consen 294 IKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMW---RANRMLKYTSFFEFNHHLESIMSKAY-IYRVIRTTGY 369 (815)
T ss_pred EEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhh---hhhhHHHHHHHHHHHHHHHHHhcchh-hhhhHHHHHH
Confidence 99999999999999 8999999999999999888876654 77888888888888888888766555 4599999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHH
Q 007323 216 ELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295 (608)
Q Consensus 216 ~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~ 295 (608)
+++.+|+.||+||..+...+-+ .+.|+.+. ....|+.|+|||+-|+||+| |...|+|..|.+|
T Consensus 370 mlyilHinacvYY~~SayqglG--~~rWVydg--------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf 432 (815)
T KOG0499|consen 370 LLYILHINACVYYWASAYQGLG--TTRWVYDG--------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVF 432 (815)
T ss_pred HHHHHhhhHHHHHHHHhhcccc--cceeEEcC--------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHH
Confidence 9999999999999988765443 45787542 23569999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhcc--ccHHHHHhhC
Q 007323 296 IMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEASVLQDI 372 (608)
Q Consensus 296 ~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~l~~l 372 (608)
..+--+.|+++|+.+||++-.++++ +.+++.|+..|+....||++.++|...|+||+.+|+|.|++. .+|.++++.|
T Consensus 433 ~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~L 512 (815)
T KOG0499|consen 433 QLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTL 512 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhc
Confidence 9999999999999999999999998 778899999999999999999999999999999999999764 6799999999
Q ss_pred CHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee
Q 007323 373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY 452 (608)
Q Consensus 373 p~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~ 452 (608)
|..||.+++..++...+.++.+|++++.+.+..+..+++.+.|.|||.|++.||.+.+||+|..|.|++.. .++|. .+
T Consensus 513 P~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-Gp~~~-~V 590 (815)
T KOG0499|consen 513 PTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-GPDGT-KV 590 (815)
T ss_pred chhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-CCCCC-EE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 44554 58
Q ss_pred eEEeCCCCeecchhhhc---CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323 453 VSYLHPNSSFGEVSILC---NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 453 ~~~l~~G~~fGe~~~~~---~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i 507 (608)
+.++.+|++|||++++. |..|+++++|.+.|.++.++++++.+++..||+-..-+
T Consensus 591 l~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iL 648 (815)
T KOG0499|consen 591 LVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRIL 648 (815)
T ss_pred EEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHH
Confidence 99999999999999885 56789999999999999999999999999999755433
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-30 Score=251.43 Aligned_cols=230 Identities=20% Similarity=0.284 Sum_probs=177.0
Q ss_pred ccCCCcccccceEECCCChh-HHHHHHHHHHHH---HHHHHHhchheeeccC-----------------CCcCeehHHHH
Q 007323 53 VLSGFRHFSRNLVFHPDNRW-YRAWTKFILIWA---VYSSIFTPVEFGFFRG-----------------LSKNLYVLDIV 111 (608)
Q Consensus 53 ~~~~~~~~~~~~~~~P~s~~-~~~w~~~~~~~~---~~~~~~~p~~~~f~~~-----------------~~~~~~~~~~~ 111 (608)
+..++|.+.+..+.+|.|+. ..+...+-++++ +.++++-.. ..|+.. ....+.++|.+
T Consensus 170 ~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~-pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~v 248 (477)
T KOG3713|consen 170 RCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTL-PEFQVPDKQGEGLLVNVEKIESEPHPILTYVETV 248 (477)
T ss_pred ChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC-HhhhchhhccccccccccccCCCCCCchHHHHHH
Confidence 33447778888888999654 344433333333 333333322 122211 11237799999
Q ss_pred HHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhc--Cc---------hhHHHHHH
Q 007323 112 GQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS--GR---------KEAVRYLL 179 (608)
Q Consensus 112 ~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~--~~---------~~~~~~l~ 179 (608)
|.+||++|+++||..+. .+ .+|+|++. +||++|++||++.+... +. ...+++||
T Consensus 249 Ci~WFT~E~llR~~~~P------------~k--~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR 314 (477)
T KOG3713|consen 249 CIAWFTFEYLLRFLVAP------------NK--LEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLR 314 (477)
T ss_pred HHHHHHHHHHHHHHcCc------------hH--HHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHH
Confidence 99999999999976654 34 89999988 99999999999864322 11 14678999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCccccc
Q 007323 180 WIRLYRVRKVSQFFHKMEKD-IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFR 258 (608)
Q Consensus 180 l~rl~r~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 258 (608)
++|++|++|+.|++.+++.. .+.+..+.++..+++++.+.+-+||.+.|++++.++.. +|.
T Consensus 315 ~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~------------------~Ft 376 (477)
T KOG3713|consen 315 VLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDT------------------KFT 376 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC------------------CCc
Confidence 99999999999999999875 45666777899999999999999999999999876542 233
Q ss_pred ccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323 259 EIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 259 ~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
+++ .|+|||++|||||||||++|.|+.|++++..+++.|+++.|++|..|.+-+...
T Consensus 377 SIP------a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~ 433 (477)
T KOG3713|consen 377 SIP------AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMY 433 (477)
T ss_pred ccc------chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHH
Confidence 444 899999999999999999999999999999999999999999999999888763
No 7
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.6e-26 Score=221.67 Aligned_cols=277 Identities=16% Similarity=0.163 Sum_probs=197.5
Q ss_pred CCccccCCCcccccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeecc--CCCcCeehHHHHHHHHHHHHHHhhcee
Q 007323 49 NRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCL 126 (608)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~d~~~~f~t 126 (608)
.|.++.++.+.+.++++..|.+.-...+..+++++++..+++..+...-.. -....++++|++..++|.+|+++|+|.
T Consensus 69 ~Rn~r~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWS 148 (654)
T KOG1419|consen 69 QRNARYRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWS 148 (654)
T ss_pred hhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677899999999999987777777666666555555444321111 123458899999999999999999998
Q ss_pred eEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhc--C---chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007323 127 AYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS--G---RKEAVRYLLWIRLYRVRKVSQFFHKMEKDI 200 (608)
Q Consensus 127 ~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~--~---~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~ 200 (608)
+-+... . -.+.-+.+|.+++| +||++.++....++... + ..+.++-||++.++|++|+.+-...|+-+-
T Consensus 149 AGC~~r---Y--rG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLG 223 (654)
T KOG1419|consen 149 AGCCCR---Y--RGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLG 223 (654)
T ss_pred cccccc---c--ccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhh
Confidence 754332 0 01122377889988 99998766654444332 1 134688899999999999998887777666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhcc
Q 007323 201 RINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTV 280 (608)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttv 280 (608)
++.+...+-+....++.+++.+++..+.|+++.+..+++. .+-+..|.+|+||+++|+|||
T Consensus 224 SvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~-------------------n~~F~TyADALWWG~ITltTI 284 (654)
T KOG1419|consen 224 SVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGT-------------------NDEFPTYADALWWGVITLTTI 284 (654)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-------------------cccchhHHHHHHhhheeEEee
Confidence 6667777777778888888888888888877655333221 134678999999999999999
Q ss_pred ccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007323 281 GYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHL 355 (608)
Q Consensus 281 Gygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~ 355 (608)
||||.+|+||.+++++.++.++|+.+||.+-|++++-+.-...+++.| ++|-++++.-..|.+-.=+||
T Consensus 285 GYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQ------KHf~rrr~pAA~LIQc~WR~y 353 (654)
T KOG1419|consen 285 GYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQ------KHFNRRRNPAASLIQCAWRYY 353 (654)
T ss_pred ccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHH------HHHHhhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988654311111111 234455555555555544444
No 8
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.3e-25 Score=203.57 Aligned_cols=180 Identities=19% Similarity=0.327 Sum_probs=134.5
Q ss_pred cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhc-------Cc---
Q 007323 103 KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS-------GR--- 171 (608)
Q Consensus 103 ~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~-------~~--- 171 (608)
+++++++.+|.+||.+|+++||..+..+ .-|.|+-. +||+++++|+.+.+... +.
T Consensus 253 dPFFiVEt~CIiWFtfEllvRf~aCPsK--------------~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gq 318 (507)
T KOG1545|consen 253 DPFFIVETLCIIWFTFELLVRFFACPSK--------------ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQ 318 (507)
T ss_pred CchHhHHHHHHHHHhHHHHHHHhcCccH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccch
Confidence 3578999999999999999999887552 44666644 99999999998765421 10
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecc
Q 007323 172 ----KEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246 (608)
Q Consensus 172 ----~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~ 246 (608)
...+|++|+.|++|++|+.|+.++++-+.. .......+..++++++..+-+++...|+.+..+++
T Consensus 319 qaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~---------- 388 (507)
T KOG1545|consen 319 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPE---------- 388 (507)
T ss_pred hhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCc----------
Confidence 124566677777777777777777664322 33344566666666666666777777766544333
Q ss_pred cccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
+++.+++ +|||||++|||||||||..|.|..++++..+|.+.|++..|+++-.|.+-+.-
T Consensus 389 --------S~F~SIP------daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFny 448 (507)
T KOG1545|consen 389 --------SHFSSIP------DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 448 (507)
T ss_pred --------cCCCcCc------ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccc
Confidence 3444555 99999999999999999999999999999999999999999998877665544
No 9
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.7e-22 Score=186.52 Aligned_cols=179 Identities=21% Similarity=0.300 Sum_probs=140.0
Q ss_pred cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhcCchhH---HHHH
Q 007323 103 KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKASGRKEA---VRYL 178 (608)
Q Consensus 103 ~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~~~~~~---~~~l 178 (608)
..++.+|..|.+||..|+++|+..+. .+ .+|+|+-. +||+++++|+++-+....+.++ +--|
T Consensus 227 ~aFFclDTACVmIFT~EYlLRL~aAP------------sR--~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTL 292 (632)
T KOG4390|consen 227 VAFFCLDTACVMIFTGEYLLRLFAAP------------SR--YRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTL 292 (632)
T ss_pred eeeEEecceeEEEeeHHHHHHHHcCc------------hH--HHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEE
Confidence 34788999999999999999977653 33 88999965 9999999999987765554432 3346
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccc
Q 007323 179 LWIRLYRVRKVSQFFHKMEKD-IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADF 257 (608)
Q Consensus 179 ~l~rl~r~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 257 (608)
|++|++|++++.++..+++-+ +.+......+..+++.+.+.+-++|.++||.++.... ..+
T Consensus 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~a------------------t~F 354 (632)
T KOG4390|consen 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSA------------------TKF 354 (632)
T ss_pred EeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccc------------------ccc
Confidence 777777777777777766542 4455566688888888888899999999998764221 222
Q ss_pred cccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 258 REIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 258 ~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.+++ .|||++++||||.||||..|.|..+++|..++.+.|+++.|+++..|.+-++
T Consensus 355 TsIP------aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFS 410 (632)
T KOG4390|consen 355 TSIP------AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFS 410 (632)
T ss_pred ccCc------HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechh
Confidence 2333 8999999999999999999999999999999999999999987766655444
No 10
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.61 E-value=7e-15 Score=140.66 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=118.8
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.+.++.+++|+.++++++..+....+.+.|++|++|+++|++.+.+|+|.+|.++++... +|++..+..+.+|++||+.
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILA 84 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhH
Confidence 357899999999999999999999999999999999999999999999999999999864 6677889999999999999
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+++.+.++.+++.|.++|+++.++.+.|.+++.++|.+...++..+..
T Consensus 85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~ 132 (236)
T PRK09392 85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG 132 (236)
T ss_pred HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888777654
No 11
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.58 E-value=1.1e-14 Score=135.85 Aligned_cols=187 Identities=24% Similarity=0.331 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhcc-chhHhhhhccHHHHHhhcC--ch---hHHHHHHH
Q 007323 107 VLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSS-FIIDLFSCMPWDLIYKASG--RK---EAVRYLLW 180 (608)
Q Consensus 107 ~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~-f~iDl~s~lP~~~~~~~~~--~~---~~~~~l~l 180 (608)
++|.+++++|++|+++++++.... +++|++++ .++|+++++|..+...... .. ...+..++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 478999999999999999876442 48899985 4899999999865543322 11 23555566
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccc
Q 007323 181 IRLYRVRKVSQFFHKMEKDI-RINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFRE 259 (608)
Q Consensus 181 ~rl~r~~r~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 259 (608)
+|++|+.|+.+.++.+.... .......++.+++..+++++|++||+++.+...........++. .......
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~--------~~~~~~~ 139 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWD--------SENDIYG 139 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS------------SST
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccc--------ccccccc
Confidence 66666666555555444332 22345567888899999999999999998876543221110100 0012223
Q ss_pred cchHHHHHHHHHHHHHHhhccccCCcccC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 007323 260 IGFWKSYITSMYASVVTMTTVGYGDVHAV-----NLREMVFI-MIYVSFDMILGAYLIGNM 314 (608)
Q Consensus 260 ~~~~~~Y~~s~y~~~~t~ttvGygdi~p~-----~~~e~~~~-~~~~~~g~~~~a~~i~~i 314 (608)
.+..++|..|+||++.++||.|+||..|. +..+.++. ++..+.+++++++++|.+
T Consensus 140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 35567899999999999999999999987 88899888 666666678888888764
No 12
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.57 E-value=3.2e-14 Score=119.40 Aligned_cols=114 Identities=32% Similarity=0.550 Sum_probs=107.4
Q ss_pred cccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc
Q 007323 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ 473 (608)
Q Consensus 394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~ 473 (608)
+|+.++++.+..+...++.+.+.+|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 57899999999999999999999999999999999999999999999999888899889999999999999999888889
Q ss_pred ccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 474 ~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i 507 (608)
..+++|.++|.++.++.+.|.+++.++|.+...+
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 114 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence 9999999999999999999999999999876543
No 13
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.56 E-value=2.3e-14 Score=142.61 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=159.9
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.+++.++|+|+.++++++.+|...+....|.+||+|+..|.+.+++|+|.+|.|++.. ++|. ++..+..||.||..
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~--v~~~~~~gdlFg~~ 81 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE--VLDRLAAGDLFGFS 81 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe--eeeeeccCccccch
Confidence 5789999999999999999999999999999999999999999999999999999876 4443 88999999999999
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhccCc-chhhhhhhcccccccccchhhhhhhhHh
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKE-SDLRLKQLQSDITFHISKHEAELALKVN 544 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~~~-~~~~~~~l~~~~~~~i~~~~~~~~~~L~ 544 (608)
++++..+....+.|.+++.++.||++.|.+++.++|.+...+..++.++.. .-.+.++............+.....++.
T Consensus 82 ~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~~~~ 161 (610)
T COG2905 82 SLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPAVT 161 (610)
T ss_pred hhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCCCcc
Confidence 999988888888899999999999999999999999999999888877544 2222222211222222334444555666
Q ss_pred HHHhcCCHHHHHHHHHcCCCCC-CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323 545 SAAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 545 ~aa~~~~~~~~~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 602 (608)
+.......++++.+.+.|++.. ..+.+| .++.+-+ ..+++...+..|-+...+-
T Consensus 162 v~~~~~i~~aa~km~~~gv~s~v~l~~~~-~~~GIvT---~~dl~~~v~~~g~~~~~~V 216 (610)
T COG2905 162 VSPQASIQDAARKMKDEGVSSLVVLDDSG-PLLGIVT---RKDLRSRVIADGRSKTQKV 216 (610)
T ss_pred cCccCcHHHHHHHHHhcCCCeEEEEcCCC-Cccceee---hHHHHHHHHhcCCCcccch
Confidence 6777778889999999998822 222221 2223222 3467777777776655543
No 14
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.55 E-value=7.7e-14 Score=131.18 Aligned_cols=118 Identities=16% Similarity=0.265 Sum_probs=110.2
Q ss_pred cCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-Ccc
Q 007323 396 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP 474 (608)
Q Consensus 396 ~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-~~~ 474 (608)
+.++++.+.++...++.+.|++|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 4689999999999999999999999999999999999999999999988889999999999999999999988764 677
Q ss_pred cEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 475 ~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++++|.++|+++.++.++|.+++..+|.+...+++.+.+
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 124 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR 124 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999888877755
No 15
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.52 E-value=9.1e-14 Score=111.38 Aligned_cols=91 Identities=30% Similarity=0.576 Sum_probs=86.6
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechh
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ 491 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~ 491 (608)
.+.|++|++|+++|++.+++|+|++|.++++..+.+|+..++..+.+|++||+.+++.+.++..+++|.++|+++.+|++
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 80 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE 80 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence 36899999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhh
Q 007323 492 SFTNIIDIYFC 502 (608)
Q Consensus 492 ~~~~ll~~~~~ 502 (608)
+|.++++++|+
T Consensus 81 ~~~~~~~~~p~ 91 (91)
T PF00027_consen 81 DFLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHHSHH
T ss_pred HHHHHHHhCcC
Confidence 99999999984
No 16
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.51 E-value=3.5e-13 Score=113.90 Aligned_cols=116 Identities=28% Similarity=0.421 Sum_probs=105.9
Q ss_pred cccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhh--cCC
Q 007323 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL--CNI 471 (608)
Q Consensus 394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~--~~~ 471 (608)
+|.+++++.++.++..++.+.+.+|++|+++|++.+++|+|.+|.++++..+.+|++..+..+.+|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999998888999899999999999999988 345
Q ss_pred CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHH
Q 007323 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509 (608)
Q Consensus 472 ~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~ 509 (608)
+...++.+.++|.++.++.+.+......++....+++.
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 118 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL 118 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence 67789999999999999999999999988877665543
No 17
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.50 E-value=1.2e-13 Score=130.83 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=103.6
Q ss_pred HHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEece
Q 007323 403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCEL 482 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~ 482 (608)
..++....+.+.|++|++|+.+||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.++++++.|.++
T Consensus 24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~ 103 (226)
T PRK10402 24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEE 103 (226)
T ss_pred CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEecc
Confidence 34577788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 483 CRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 483 ~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
|+++.++.++|.+++..+|.+...++..+..
T Consensus 104 ~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~ 134 (226)
T PRK10402 104 CWCLALPMKDCRPLLLNDALFLRKLCKFLSH 134 (226)
T ss_pred EEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999999999999999999888777765
No 18
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.46 E-value=7.7e-13 Score=124.73 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=113.3
Q ss_pred cccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhc
Q 007323 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 469 (608)
Q Consensus 390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~ 469 (608)
...+.|...+++....+......+.+++|++|+.+||+.+.+|+|.+|.++++...++|++.++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 45667777788888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 470 ~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+.++.++++|.++|+++.++++.|.+++.++|.+...++..+..
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~ 126 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR 126 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence 88999999999999999999999999887778888888777766
No 19
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.46 E-value=9.4e-13 Score=125.92 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=110.7
Q ss_pred hcccccccCCCHHHHHHHHHHce-eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhh
Q 007323 389 IEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 467 (608)
Q Consensus 389 l~~~~~f~~l~~~~l~~l~~~~~-~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~ 467 (608)
+++.+.|..++++++..|..... .+.|.+|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 55666666799999999998876 46899999999999999999999999999999999999999999999999999776
Q ss_pred hcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 468 ~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+. .+...++.|.++++++.+|++.|.+++.++|.+...+++.+..
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~ 139 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG 139 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH
Confidence 54 4556789999999999999999999999999999988887765
No 20
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.42 E-value=3.4e-13 Score=126.62 Aligned_cols=125 Identities=29% Similarity=0.444 Sum_probs=113.1
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..+.+++.-+|++++++.+.++...+.++.+++|+.|++||+.++.+|+|.+|+++++. +|+ .+..+.+|..|||
T Consensus 120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv---~~~--~v~~~~~g~sFGE 194 (368)
T KOG1113|consen 120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV---NGT--YVTTYSPGGSFGE 194 (368)
T ss_pred HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE---CCe--EEeeeCCCCchhh
Confidence 35678889999999999999999999999999999999999999999999999999998 333 6889999999999
Q ss_pred hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
.++..+.||.+|+.|.+++.+|.+++..|..++..+....+.++...++.
T Consensus 195 lALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s 244 (368)
T KOG1113|consen 195 LALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLES 244 (368)
T ss_pred hHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhc
Confidence 99999999999999999999999999999988877766666776666654
No 21
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.41 E-value=1.1e-13 Score=136.49 Aligned_cols=254 Identities=20% Similarity=0.327 Sum_probs=155.4
Q ss_pred ehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccchhHhhhhccHHHHHhhcCchhHHHHHHHHHHHH
Q 007323 106 YVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYR 185 (608)
Q Consensus 106 ~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r 185 (608)
..+|+.+.++|++-+++||..+-.. + +-++.-.-++|.+.+-|..+......+.-.+|+||.+|+..
T Consensus 165 qqidlafnifflvyffirfiaasdk-----l--------wf~lemys~vdfftippsfvsiyl~r~wlglrflralrlmt 231 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFIAASDK-----L--------WFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRALRLMT 231 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHhhcccc-----e--------eeeeehhhheeeeecCchheEEEeccchHHHHHHHHHHhcc
Confidence 4689999999999999999876331 0 11122233677777777654333333344577777777777
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHH
Q 007323 186 VRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKS 265 (608)
Q Consensus 186 ~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 265 (608)
+..+.+|++.++...+ .++.+++..++-+....|.+..+++.. +.-|- ++.+ +....
T Consensus 232 vpdilqylnilktsss-----irl~qlvsifisvwltaag~ihllens------gdp~~-----------~f~n-~hrlt 288 (1103)
T KOG1420|consen 232 VPDILQYLNILKTSSS-----IRLVQLVSIFISVWLTAAGFIHLLENS------GDPWE-----------NFQN-NHRLT 288 (1103)
T ss_pred HHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHhhcceeehhhcC------CChhH-----------hccC-cccch
Confidence 7778787776654322 266666655555544555555555432 11121 1111 22357
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-hHHHHHHHHHHHHHHhhCC--
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSK-TEKFRDKMTDLMKYINRNR-- 342 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~-~~~~~~~~~~~~~~m~~~~-- 342 (608)
|+.|.||.++||+||||||++..|..+++|.+++++.|...||-.+..|..++.+..+ .-+|+..- .+++
T Consensus 289 yw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-------gkkhiv 361 (1103)
T KOG1420|consen 289 YWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-------GKKHIV 361 (1103)
T ss_pred hhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-------CCeeEE
Confidence 9999999999999999999999999999999999999999999999999999987322 11222110 0111
Q ss_pred CCHHH-HHHHHHHHHHHHhcc---cc-HHHHHhhCCHHHHHHHHHHHhHhhhcccccccC--CCHHHHHH
Q 007323 343 LGRDI-RDQIIGHLRLQYESS---YT-EASVLQDIPISIRAKISQTLYLPYIEKVPLFKG--CSSEFINQ 405 (608)
Q Consensus 343 l~~~l-~~rv~~y~~~~~~~~---~~-~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~--l~~~~l~~ 405 (608)
+-.++ -+.|..+++-.-.++ .+ |--++...|++|.-| .++.+-+.++.+|++ +++-.++.
T Consensus 362 vcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r 428 (1103)
T KOG1420|consen 362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR 428 (1103)
T ss_pred EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence 01111 122222222111222 22 344778888887655 344556677778774 45554443
No 22
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.37 E-value=6.1e-12 Score=97.03 Aligned_cols=55 Identities=33% Similarity=0.617 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.|.+|+||+++|+||+||||+.|.+..+|+++++.+++|+.++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999999999999999988765
No 23
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.35 E-value=9.3e-13 Score=129.33 Aligned_cols=127 Identities=22% Similarity=0.298 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcee
Q 007323 372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451 (608)
Q Consensus 372 lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~ 451 (608)
+|..-|..=..++..+.+++..+.+++.++++.++..+|.++.|.+|+.|+++||+++++|++.+|.+++.. +|+
T Consensus 139 l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~---~g~-- 213 (732)
T KOG0614|consen 139 LPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR---EGK-- 213 (732)
T ss_pred cccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee---CCe--
Confidence 333334344556677888999999999999999999999999999999999999999999999999999986 443
Q ss_pred eeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhc
Q 007323 452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCD 503 (608)
Q Consensus 452 ~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~ 503 (608)
.+..+++|..|||.+++.+.+|+++++|++++.+|.|+++.|+.++......
T Consensus 214 ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~ 265 (732)
T KOG0614|consen 214 LLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLE 265 (732)
T ss_pred eeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999998875433
No 24
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.34 E-value=9e-12 Score=128.61 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=103.7
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++++++++|+++++++++++...++.+.|++|++|+++||..+.+|+|++|.|+++..+.+| +.++..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~~ 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGYG 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeehh
Confidence 456889999999999999999999999999999999999999999999999999999988777 6688899999999985
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhh
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF 501 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~ 501 (608)
+.+.++.++++|.++|+++.++++.|..+...++
T Consensus 86 --l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 86 --LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred --hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 6788899999999999999999999988776554
No 25
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.33 E-value=2.1e-12 Score=126.94 Aligned_cols=122 Identities=22% Similarity=0.375 Sum_probs=109.5
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccC-CceeeeEEeCCCCe
Q 007323 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN-GTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~-g~~~~~~~l~~G~~ 461 (608)
+.+..+|+.+|+|.+++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...++. +++..+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34568899999999999999999999999999999999999999999999999999999886654 56778999999999
Q ss_pred ecchhhhcCCCcccEEEEece-eeeEEechhhHHHHHHHhhhcH
Q 007323 462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIYFCDG 504 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~~~~~~ll~~~~~~~ 504 (608)
|||-+++....|++++.|..+ ++++.++++.|..++....++.
T Consensus 348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ 391 (732)
T KOG0614|consen 348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK 391 (732)
T ss_pred hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence 999999999999999999887 9999999999988876544433
No 26
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.30 E-value=1.4e-11 Score=113.93 Aligned_cols=96 Identities=23% Similarity=0.294 Sum_probs=89.5
Q ss_pred CCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc--ccEEEEeceeeeEEechhhHHH
Q 007323 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--PYTVQVCELCRLLRIDKQSFTN 495 (608)
Q Consensus 418 g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~--~~~~~a~~~~~l~~l~~~~~~~ 495 (608)
|++|+++||+.+++|+|.+|.|+++..+++|++.++..+.+|++||+.+++.+.+. .+++.|.++|+++.+|.++|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 78999999999999999999999999999999999999999999999999887754 4789999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHhc
Q 007323 496 IIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 496 ll~~~~~~~~~il~~l~~ 513 (608)
++.++|.+...+++.+..
T Consensus 81 l~~~~p~l~~~~~~~l~~ 98 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSS 98 (193)
T ss_pred HHHHChHHHHHHHHHHHH
Confidence 999999999999887765
No 27
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.30 E-value=2.7e-09 Score=120.33 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=69.1
Q ss_pred cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHH----------------------------
Q 007323 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA---------------------------- 580 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~---------------------------- 580 (608)
..+.+..+..+.+|+|.|+..++.+.++.|+++|+++|..|..|+||||.|+
T Consensus 548 G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~ 627 (823)
T PLN03192 548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLC 627 (823)
T ss_pred CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHH
Confidence 3445677788899999999999999999999999999999999999988554
Q ss_pred ---hcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 581 ---SRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 581 ---~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 628 ~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~Tp 658 (823)
T PLN03192 628 TAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658 (823)
T ss_pred HHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 4555666777889999999999999985
No 28
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.28 E-value=2.7e-11 Score=114.97 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=95.8
Q ss_pred HHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeee
Q 007323 406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL 485 (608)
Q Consensus 406 l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l 485 (608)
+....+.+.|++|++|+.+||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+. .+.++.++++|+++|++
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v 110 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV 110 (230)
T ss_pred ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence 344567899999999999999999999999999999999999999999999999999964 46677899999999999
Q ss_pred EEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 486 ~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+.++.+.|.+++..+|.+...++..+..
T Consensus 111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~ 138 (230)
T PRK09391 111 RLIKRRSLEQAAATDVDVARALLSLTAG 138 (230)
T ss_pred EEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence 9999999999999999999998887765
No 29
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.23 E-value=1.4e-11 Score=103.42 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=76.7
Q ss_pred ccccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCC
Q 007323 526 SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 526 ~~~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 605 (608)
.+..-+++.+|.+..+|+|.|+.+++++.++.|+..|++++++...||||||.||.-++.+++.+|+++|||+|+.....
T Consensus 84 ~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ 163 (228)
T KOG0512|consen 84 SEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGL 163 (228)
T ss_pred HhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCccccccccc
Confidence 34455688899999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCC
Q 007323 606 MQI 608 (608)
Q Consensus 606 ~T~ 608 (608)
+|+
T Consensus 164 ltp 166 (228)
T KOG0512|consen 164 LTP 166 (228)
T ss_pred chh
Confidence 664
No 30
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.21 E-value=8.6e-11 Score=109.56 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=84.6
Q ss_pred HceeeeecCCCeEEccCC--ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeE
Q 007323 409 RLHEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~--~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~ 486 (608)
..+.+.|++|++|+++|| +.+++|+|++|.|+++..+.+|++.++..+.||++||+.+++ +.++++++.|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 456789999999999999 679999999999999999999999999999999999997664 57888999999999999
Q ss_pred EechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 487 ~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
.++.+.| +|.+...++..+..
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~ 104 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVR 104 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHH
Confidence 9999887 35555555555543
No 31
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-11 Score=104.34 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=57.8
Q ss_pred hcccccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC
Q 007323 524 LQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 524 l~~~~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 603 (608)
+......+.+.....+.+++|+|+..+..+++++|+++|+.++..|..|.||||-|+..|..+++++|+..||.+|..|.
T Consensus 91 Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk 170 (226)
T KOG4412|consen 91 LLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK 170 (226)
T ss_pred HhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence 33333455555556666777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCC
Q 007323 604 SIMQI 608 (608)
Q Consensus 604 ~g~T~ 608 (608)
.|+|+
T Consensus 171 ~G~Tp 175 (226)
T KOG4412|consen 171 YGFTP 175 (226)
T ss_pred cCccH
Confidence 77764
No 32
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.5e-11 Score=102.04 Aligned_cols=79 Identities=27% Similarity=0.318 Sum_probs=69.8
Q ss_pred cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
...++..|....+|+|.|+..|.++++++|+..|+.+|..|..|+||||.|...|+.+...+|+++|||++..|++| |+
T Consensus 129 ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~ 207 (226)
T KOG4412|consen 129 GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TA 207 (226)
T ss_pred CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-ch
Confidence 35667788888899999999999999999999999999999999999999988889999999999999999999888 63
No 33
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.07 E-value=2e-10 Score=108.21 Aligned_cols=114 Identities=22% Similarity=0.415 Sum_probs=104.5
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.++.+.|+++|+++.|...+...++..+.++.|.+|+.|..+|+.++.+|+|.+|.|.+.... +| ..+ .++.|++|
T Consensus 236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dyf 311 (368)
T KOG1113|consen 236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDYF 311 (368)
T ss_pred hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechhhhc
Confidence 356788999999999999999999999999999999999999999999999999999988743 33 445 99999999
Q ss_pred cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHh
Q 007323 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~ 500 (608)
||.+++.+.|+.+++.|.+...|..++++.|+.++.-.
T Consensus 312 ge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 312 GELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred chHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 99999999999999999999999999999999988754
No 34
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.05 E-value=1.1e-10 Score=82.96 Aligned_cols=51 Identities=39% Similarity=0.539 Sum_probs=30.0
Q ss_pred HHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 558 LIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 558 Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
|+++| ++++..|..|.||||+|+..|+.+++++|+++|+|++++|.+|+|+
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tp 52 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTP 52 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--H
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCH
Confidence 45677 8999999999999999999999999999999999999999999985
No 35
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.03 E-value=3.5e-10 Score=114.75 Aligned_cols=80 Identities=29% Similarity=0.313 Sum_probs=66.5
Q ss_pred cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
....+..|.++.+.+|+||.+++++++++|+++|+++|+.+ ..+.||||+|+..|+..+|.+|+++|||++++|.+|.|
T Consensus 68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~ 147 (600)
T KOG0509|consen 68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT 147 (600)
T ss_pred CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence 44556666778888888888888888888888888888887 66888888888888888888888888888888888876
Q ss_pred C
Q 007323 608 I 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 148 ~ 148 (600)
T KOG0509|consen 148 P 148 (600)
T ss_pred H
Confidence 3
No 36
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.99 E-value=1.6e-09 Score=86.04 Aligned_cols=64 Identities=34% Similarity=0.533 Sum_probs=58.5
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 602 (608)
..+++|+|+..+..+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|
T Consensus 26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 4459999999999999999999999999999999999999999999999999999999999886
No 37
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.98 E-value=8.6e-10 Score=82.62 Aligned_cols=70 Identities=29% Similarity=0.288 Sum_probs=65.7
Q ss_pred hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
..++|+|+|+..|.++..++++..|++++.+|..|.|||-.|+-.||.+||++|+++|||-.++.-+|.|
T Consensus 33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~ 102 (117)
T KOG4214|consen 33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTA 102 (117)
T ss_pred CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchh
Confidence 5688999999999999999999999999999999999999999999999999999999998887777754
No 38
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.96 E-value=2e-08 Score=101.50 Aligned_cols=54 Identities=31% Similarity=0.461 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~ 318 (608)
.+.+|+||+++|+||+||||+.|.+..+++++++++++|+.++++.++.+..-+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999999999999999999999999999999999999999988877643
No 39
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.87 E-value=6.8e-09 Score=100.53 Aligned_cols=73 Identities=26% Similarity=0.288 Sum_probs=68.2
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCC-CCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+..+.+|+|.|+..+..+.++.|+++|++++.. +..|.||||.|+..++.+++++|+.+||+++.+|..|+|+
T Consensus 67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~Tp 140 (300)
T PHA02884 67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTP 140 (300)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 346789999999999999999999999999986 4679999999999999999999999999999999999985
No 40
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.87 E-value=8.2e-09 Score=97.41 Aligned_cols=72 Identities=29% Similarity=0.353 Sum_probs=67.9
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-CCCCCCcCCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQ 607 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~T 607 (608)
...+.+.|+.|+.+|+.++++.|+.+|+|+|..|.+|.|+|++|+++||++++++|+.. ++|+...|.+|.|
T Consensus 337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgST 409 (452)
T KOG0514|consen 337 SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGST 409 (452)
T ss_pred hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCch
Confidence 35678899999999999999999999999999999999999999999999999999975 8999999999988
No 41
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.86 E-value=4.3e-09 Score=74.40 Aligned_cols=53 Identities=42% Similarity=0.595 Sum_probs=45.0
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHH
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll 592 (608)
.+++|.|+..++.+.++.+++.|++++..|.+|.||||.|+..|+.+++++|+
T Consensus 2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 47899999999999999999999999999999999999999999999999986
No 42
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.80 E-value=4.6e-09 Score=95.73 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=54.4
Q ss_pred cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.-+.+..|..+..|+|++|..|+...+++|+..|+.+|..+....||||+|+.+||.++|+.|++..||+|+.|..|.|+
T Consensus 24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp 103 (448)
T KOG0195|consen 24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP 103 (448)
T ss_pred ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence 33445555666667777777777777777777777777666666677777777777777777777777777777766664
No 43
>PHA02741 hypothetical protein; Provisional
Probab=98.80 E-value=1.7e-08 Score=90.88 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=70.6
Q ss_pred ccccchhhhhhhhHhHHHhcCC----HHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCC
Q 007323 530 FHISKHEAELALKVNSAAYHGD----LYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGN 603 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~----~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~ 603 (608)
..++..+..+.+|+|.|+..++ .+.++.|+..|++++..+. .|+||||.|+..++.+++++|+. .|++++.+|.
T Consensus 51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~ 130 (169)
T PHA02741 51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA 130 (169)
T ss_pred hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence 3455667778899999999988 5889999999999999885 89999999999999999999997 5999999999
Q ss_pred CCCCC
Q 007323 604 SIMQI 608 (608)
Q Consensus 604 ~g~T~ 608 (608)
+|+|+
T Consensus 131 ~g~tp 135 (169)
T PHA02741 131 DNKSP 135 (169)
T ss_pred CCCCH
Confidence 99985
No 44
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.76 E-value=3e-06 Score=83.21 Aligned_cols=91 Identities=12% Similarity=0.251 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhC
Q 007323 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRN 341 (608)
Q Consensus 262 ~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~ 341 (608)
.-..|+.++|....|..++||||+.|.|..++.++++.-++|.++.|.+++.++-.+ +..+--+.+++||-..
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL-------eLt~aEKhVhNFMmDt 356 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL-------ELTKAEKHVHNFMMDT 356 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999999988886544 3344445677788777
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 007323 342 RLGRDIRDQIIGHLRLQY 359 (608)
Q Consensus 342 ~l~~~l~~rv~~y~~~~~ 359 (608)
++-+++++-.-+-++..|
T Consensus 357 qLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777666666655555
No 45
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=98.75 E-value=2.5e-08 Score=79.15 Aligned_cols=62 Identities=37% Similarity=0.501 Sum_probs=57.5
Q ss_pred HhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 543 L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
||.|+..++.+.++.+++.+.+++. |.||||+|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 62 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTA 62 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCH
Confidence 5789999999999999999988876 8899999999999999999999999999999999984
No 46
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=98.74 E-value=1.1e-08 Score=112.84 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=73.5
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
......+....+|+|.|+..++..++++|+++|++++.++..|+||||.|+..|+.+|+++|+++||++|+.|.+|.|+
T Consensus 531 a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~Tp 609 (1143)
T KOG4177|consen 531 ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTP 609 (1143)
T ss_pred CceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcch
Confidence 3445566777899999999999999999999999999999999999999999999999999999999999999999985
No 47
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.74 E-value=8.9e-09 Score=100.38 Aligned_cols=73 Identities=25% Similarity=0.417 Sum_probs=50.6
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
......+|+--||..|+.+.+++|+++|+|++..|..|.|.||+||.+|+.+++++|++.|||+|.++..|.|
T Consensus 113 tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNT 185 (615)
T KOG0508|consen 113 TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNT 185 (615)
T ss_pred ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCch
Confidence 3333446666677777777777777777777777777777777777777777777777777777777777766
No 48
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.73 E-value=1.7e-08 Score=90.33 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=63.7
Q ss_pred ccccchh-hhhhhhHhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 530 FHISKHE-AELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 530 ~~i~~~~-~~~~~~L~~aa~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
..++..+ ....+|+|+|+..+..+.+++|+. .|++++..+..|.||||+|+..++.+++++|+.+||+++.++..|..
T Consensus 84 adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 163 (166)
T PHA02743 84 ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS 163 (166)
T ss_pred CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence 3445555 467888888888888888888885 78888888888889999998888888889888889998888877753
No 49
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=98.73 E-value=1.4e-08 Score=103.39 Aligned_cols=71 Identities=34% Similarity=0.505 Sum_probs=68.5
Q ss_pred hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
-..+|+|+|+..|+..++..|+++||+++.+|..|.+|+|.|+..|+.-+|-+|+.+|+|+|.+|.+|+|+
T Consensus 111 l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTp 181 (600)
T KOG0509|consen 111 LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTP 181 (600)
T ss_pred CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999995
No 50
>PHA02791 ankyrin-like protein; Provisional
Probab=98.71 E-value=2.9e-08 Score=96.27 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=63.7
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchH-HhHHHhcCcHHHHHHHHhcCCCCCCcCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP-LHLAASRGYEEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tp-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 605 (608)
+.+|+|.|+..++.+.++.|+++|++++..|..|.|| ||.|+..|+.+++++|+++||++|++|.+|
T Consensus 160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~ 227 (284)
T PHA02791 160 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN 227 (284)
T ss_pred CccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence 5799999999999999999999999999999999877 999999999999999999999999999865
No 51
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.7e-08 Score=99.55 Aligned_cols=71 Identities=28% Similarity=0.305 Sum_probs=65.1
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 602 (608)
.+..+.++.++||.|...++.+++++|+..|+++|+.|.+||||||+|++.++..+|+.|+++||-+-+..
T Consensus 576 pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsT 646 (752)
T KOG0515|consen 576 PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFAST 646 (752)
T ss_pred CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeee
Confidence 34455778899999999999999999999999999999999999999999999999999999999877654
No 52
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.69 E-value=1.5e-08 Score=92.48 Aligned_cols=76 Identities=28% Similarity=0.345 Sum_probs=70.3
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+..+....+|+|.|+..|+.++++.|++..+|+|+.+..|.||||+||--|+..+++-|++.||.+++.|++|.|+
T Consensus 61 n~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tp 136 (448)
T KOG0195|consen 61 NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTP 136 (448)
T ss_pred ccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCc
Confidence 3344455689999999999999999999999999999999999999999999999999999999999999999985
No 53
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.69 E-value=3.8e-08 Score=91.73 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=68.7
Q ss_pred cccchhhhhhhhHhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCchHHhH-HHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 531 HISKHEAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHL-AASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~--~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~-A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
.++..+..+.+|+|.++. .+..+.++.|++.|++++..|..|.||||. |+..++.+++++|+++|++++.+|..|+|
T Consensus 115 din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~t 194 (209)
T PHA02859 115 SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYN 194 (209)
T ss_pred CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 455566778899998765 468999999999999999999999999996 56678999999999999999999999998
Q ss_pred C
Q 007323 608 I 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 195 p 195 (209)
T PHA02859 195 C 195 (209)
T ss_pred H
Confidence 5
No 54
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.68 E-value=2.1e-08 Score=87.98 Aligned_cols=77 Identities=25% Similarity=0.288 Sum_probs=56.9
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+|..|..+.+|+.+|+..|+++++++|++.|++++.......++|++|+..|..++|++|+.++.|+|.-|.+|-|+
T Consensus 153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTp 229 (296)
T KOG0502|consen 153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTP 229 (296)
T ss_pred ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCce
Confidence 55666777777777777777777777777777777777666777777777777777777777777777777777663
No 55
>PHA02795 ankyrin-like protein; Provisional
Probab=98.68 E-value=3.4e-08 Score=99.71 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=66.4
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+++|.++..+..+.++.|+.+|+++|..|..|.||||.|+..|+.+++++|+++||++|++|..|+|+
T Consensus 188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~Tp 257 (437)
T PHA02795 188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTC 257 (437)
T ss_pred ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 4467888999999999999999999999999999999999999999999999999999999999999985
No 56
>PF13606 Ank_3: Ankyrin repeat
Probab=98.67 E-value=2.6e-08 Score=60.08 Aligned_cols=30 Identities=50% Similarity=0.917 Sum_probs=28.4
Q ss_pred CCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 571 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 600 (608)
+|+||||+|+..|+.+++++|+++|+|+|+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999984
No 57
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.66 E-value=2.6e-08 Score=104.39 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=103.0
Q ss_pred HHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEe
Q 007323 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC 480 (608)
Q Consensus 401 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~ 480 (608)
.++..+-..+......+|+.++++||..+++|+|+.|+++-......|+..++..++.||.+|+...+.+.+|..|+.|+
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av 578 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV 578 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence 45556666788899999999999999999999999999998876667777789999999999999999999999999999
Q ss_pred ceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 481 ~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
.++++.+||...|..+..+||+...++.+-+.++
T Consensus 579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~ 612 (1158)
T KOG2968|consen 579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEK 612 (1158)
T ss_pred eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999999998887777664
No 58
>PHA02791 ankyrin-like protein; Provisional
Probab=98.66 E-value=6e-08 Score=94.07 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=59.0
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 606 (608)
.+|+|.|+..++.+.++.|+..|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|+
T Consensus 62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~ 128 (284)
T PHA02791 62 EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW 128 (284)
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCC
Confidence 5888888888888999988888888888888899999999999999999999988998888888776
No 59
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.66 E-value=4.3e-08 Score=104.16 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=55.5
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhc-CcHHHHHHHHhcCCCCCCcCC-CCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR-GYEEIMTFLIQKGVDINLKGN-SIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~T~ 608 (608)
.++..+..+.+|+|.|+..++.+.++.|++.|++++..|..|.||||+|+.. ++.+++++|+++|+++|.++. .|.|+
T Consensus 193 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~Tp 272 (477)
T PHA02878 193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA 272 (477)
T ss_pred CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCH
Confidence 3444555666777777777777777777777777777777777777777754 567777777777777777764 67664
No 60
>PHA02946 ankyin-like protein; Provisional
Probab=98.65 E-value=8.2e-08 Score=100.18 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=68.1
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC--cHHHHHHHHhcCCCCCC-cCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGVDINL-KGNSIM 606 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~ga~~~~-~~~~g~ 606 (608)
..++..+..+.+|||+|+..++.+.++.|+++|++++..|..|.||||+|+..+ ..+++++|+++||++|. .|.+|.
T Consensus 63 advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~ 142 (446)
T PHA02946 63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC 142 (446)
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence 455667778899999999999999999999999999999999999999988765 47889999999999985 577777
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 143 tp 144 (446)
T PHA02946 143 GP 144 (446)
T ss_pred cH
Confidence 63
No 61
>PHA02743 Viral ankyrin protein; Provisional
Probab=98.64 E-value=7.7e-08 Score=86.10 Aligned_cols=77 Identities=22% Similarity=0.256 Sum_probs=68.0
Q ss_pred ccchhhhhhhhHhHHHhcCCHH---HHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLY---QLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIM 606 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~---~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~ 606 (608)
++..+..+.+|+|+|+..+..+ .+++|+..|++++..| ..|.||||+|+..++.+++++|+. .|++++.+|.+|+
T Consensus 50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~ 129 (166)
T PHA02743 50 LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHE 129 (166)
T ss_pred hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCC
Confidence 4455667899999999987754 4789999999999998 589999999999999999999995 7999999999999
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 130 tp 131 (166)
T PHA02743 130 TA 131 (166)
T ss_pred CH
Confidence 85
No 62
>PHA02859 ankyrin repeat protein; Provisional
Probab=98.63 E-value=6.7e-08 Score=90.07 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=61.6
Q ss_pred ccccchh-hhhhhhHhHHHhc---CCHHHHHHHHHcCCCCCCCCCCCchHHhHHHh--cCcHHHHHHHHhcCCCCCCcCC
Q 007323 530 FHISKHE-AELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS--RGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 530 ~~i~~~~-~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~--~~~~~~v~~Ll~~ga~~~~~~~ 603 (608)
..++..+ ....+|+|.++.. +..+.++.|+++|++++..|..|.||||.|+. .++.+++++|+++|++++.+|.
T Consensus 77 advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~ 156 (209)
T PHA02859 77 ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF 156 (209)
T ss_pred CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence 3444443 3567888887643 36788888888999999888889999988764 4678899999999999998888
Q ss_pred CCCCC
Q 007323 604 SIMQI 608 (608)
Q Consensus 604 ~g~T~ 608 (608)
+|.|+
T Consensus 157 ~g~t~ 161 (209)
T PHA02859 157 DNNNI 161 (209)
T ss_pred CCCcH
Confidence 88874
No 63
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.61 E-value=3e-08 Score=87.82 Aligned_cols=70 Identities=24% Similarity=0.292 Sum_probs=36.1
Q ss_pred hhhhhHhHHHhcCCHH---HHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCCCCCC
Q 007323 538 ELALKVNSAAYHGDLY---QLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIMQ 607 (608)
Q Consensus 538 ~~~~~L~~aa~~~~~~---~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~T 607 (608)
.+.+++|.|+..+..+ .++.|++.|++++..+ ..|+||||+|+..++.+++++|+. .|++++.+|..|+|
T Consensus 54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t 128 (154)
T PHA02736 54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT 128 (154)
T ss_pred CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence 3445555555554432 3445555555555554 245555555555555555555554 25555555555554
No 64
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.61 E-value=5.6e-08 Score=60.55 Aligned_cols=33 Identities=48% Similarity=0.890 Sum_probs=31.2
Q ss_pred CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC
Q 007323 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 571 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 603 (608)
+|.||||+|+..|+.+++++|+++||+++.+|.
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 65
>PHA02884 ankyrin repeat protein; Provisional
Probab=98.60 E-value=9.1e-08 Score=92.76 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=61.7
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCCCCCCCC----CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTD----YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI 608 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d----~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~ 608 (608)
.++++.|+..+..+.++.|+++|++++..+ ..|.||||.|+..++.+++++|+++|||+|.++ ..|.|+
T Consensus 34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp 107 (300)
T PHA02884 34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107 (300)
T ss_pred CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence 456777888899999999999999999874 589999999999999999999999999999964 578885
No 66
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.58 E-value=3e-08 Score=96.82 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=70.6
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+.+..+..++++++.||..|+.+++++|++.|+|+|..+..|+|+||.+++.|+.|++++|+.+|+-++ +|..|.|+
T Consensus 141 ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtP 218 (615)
T KOG0508|consen 141 ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTP 218 (615)
T ss_pred CCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCch
Confidence 3455566778999999999999999999999999999999999999999999999999999999999987 45558885
No 67
>PHA03095 ankyrin-like protein; Provisional
Probab=98.57 E-value=1.4e-07 Score=100.52 Aligned_cols=78 Identities=23% Similarity=0.151 Sum_probs=67.4
Q ss_pred cccchhhhhhhhHhHHHhcCCH--HHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDL--YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~--~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+..+..+.+|+|.|+..+.. ..+..++..|+++|..|..|+||||+|+..|+.+++++|+++|||+|.+|.+|+|+
T Consensus 214 ~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp 293 (471)
T PHA03095 214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP 293 (471)
T ss_pred CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 3455667778999999988764 57788889999999999999999999999999999999999999999999999885
No 68
>PHA02741 hypothetical protein; Provisional
Probab=98.56 E-value=1e-07 Score=85.68 Aligned_cols=76 Identities=26% Similarity=0.246 Sum_probs=66.3
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHH------cCCCCCCCCCCCchHHhHHHhcCc----HHHHHHHHhcCCCCCCcC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIR------AGADPNRTDYDGRSPLHLAASRGY----EEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~------~ga~~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~~ 602 (608)
+..+..+.+++|.|+..++.+.++.++. .|++++..|..|.||||+|+..|+ .+++++|+++|+++|.+|
T Consensus 15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~ 94 (169)
T PHA02741 15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE 94 (169)
T ss_pred hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence 3445667899999999999999998753 368899999999999999999998 589999999999999998
Q ss_pred C-CCCCC
Q 007323 603 N-SIMQI 608 (608)
Q Consensus 603 ~-~g~T~ 608 (608)
. +|+|+
T Consensus 95 ~~~g~Tp 101 (169)
T PHA02741 95 MLEGDTA 101 (169)
T ss_pred cCCCCCH
Confidence 5 89985
No 69
>PHA03095 ankyrin-like protein; Provisional
Probab=98.56 E-value=1.9e-07 Score=99.34 Aligned_cols=79 Identities=28% Similarity=0.312 Sum_probs=57.4
Q ss_pred ccccchhhhhhhhHhHHHhcC-CHHHHHHHHHcCCCCCCCCCCCchHHhHHH--hcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHG-DLYQLEGLIRAGADPNRTDYDGRSPLHLAA--SRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~-~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~ga~~~~~~~~g~ 606 (608)
..++..+..+.+|+|+|+..+ ..+.++.|+++|++++..|..|.||||.|+ ..++.+++++|+++|++++.+|..|.
T Consensus 74 adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~ 153 (471)
T PHA03095 74 ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGM 153 (471)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCC
Confidence 344555556777777777777 477777777777777777777777777777 44567777777777777777777777
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 154 tp 155 (471)
T PHA03095 154 TP 155 (471)
T ss_pred CH
Confidence 64
No 70
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.55 E-value=1.2e-07 Score=98.97 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=65.5
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
..+..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++||+++..+..|.|
T Consensus 127 d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~ 203 (413)
T PHA02875 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV 203 (413)
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Confidence 34455566788899999999999999999999999888888999999999999999999999999999988887753
No 71
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.55 E-value=1.4e-07 Score=102.28 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=65.2
Q ss_pred hhhhhhhHhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc--HHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 536 EAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY--EEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~--~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+..+.+|+|.++. .++.+.+++|+++|++++..|..|.||||.|+..|+ .+++++|+++|||+|.+|..|+|+
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TP 250 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSP 250 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4567889998754 357899999999999999999999999999999985 589999999999999999999985
No 72
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.55 E-value=1.4e-07 Score=99.09 Aligned_cols=78 Identities=26% Similarity=0.280 Sum_probs=66.1
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+..+.+|+|.|+..+..+.++.|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.++..|.|+
T Consensus 149 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~Tp 226 (434)
T PHA02874 149 DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTP 226 (434)
T ss_pred CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH
Confidence 344556667888888888888888899988888888888888899999998889999999998899888888888874
No 73
>PHA02798 ankyrin-like protein; Provisional
Probab=98.55 E-value=1.4e-07 Score=100.49 Aligned_cols=76 Identities=29% Similarity=0.357 Sum_probs=43.6
Q ss_pred ccchhhhhhhhHhHHHhcC---CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc---HHHHHHHHhcCCCCCCcC-CC
Q 007323 532 ISKHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKGVDINLKG-NS 604 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~---~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~-~~ 604 (608)
++..+..+.+|+|+|+..+ ..+.++.|+++|++++..|..|.||||.|+..++ .+++++|+++|+|+|..+ ..
T Consensus 102 iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~ 181 (489)
T PHA02798 102 INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKE 181 (489)
T ss_pred CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcC
Confidence 4444455556666665543 4556666666666666666666666666665555 566666666666666553 34
Q ss_pred CCC
Q 007323 605 IMQ 607 (608)
Q Consensus 605 g~T 607 (608)
|.|
T Consensus 182 ~~t 184 (489)
T PHA02798 182 KYD 184 (489)
T ss_pred CCc
Confidence 444
No 74
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.52 E-value=5.9e-08 Score=91.73 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=59.8
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCC--------------------------------------CCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRT--------------------------------------DYDG 572 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~--------------------------------------d~~g 572 (608)
+|-.|..+++.+|+++.+.+.++++.|++.| ++++.. ...|
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g 340 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG 340 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence 4455666677777777777777777777666 444443 2457
Q ss_pred chHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 573 RSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 573 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
.|+|++|+++|+.++|+.|+..|||+|++|.+|.|
T Consensus 341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGST 375 (452)
T KOG0514|consen 341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGST 375 (452)
T ss_pred chhhhhhhhcCcHHHHHHHHHccCCCccccCCccH
Confidence 77799999999999999999999999999999988
No 75
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=98.51 E-value=2.9e-07 Score=77.93 Aligned_cols=69 Identities=28% Similarity=0.239 Sum_probs=61.5
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCC-CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga-~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..-+..|+..+.+..++.+++..+ -+|.+|.+|.||||-|+..|+.++|+.|+..||+++++...|||+
T Consensus 64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTP 133 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTP 133 (228)
T ss_pred HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccc
Confidence 344567888899998988887764 568999999999999999999999999999999999999999996
No 76
>PHA02875 ankyrin repeat protein; Provisional
Probab=98.51 E-value=2.3e-07 Score=96.89 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=66.9
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCC-chHHhHHHhcCcHHHHHHHHhcCCCCCCc---CCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDG-RSPLHLAASRGYEEIMTFLIQKGVDINLK---GNSI 605 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g-~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~---~~~g 605 (608)
...+..+..+.+|+|.|+..++.+.++.|++.|++++..+..| .||+|.|+..|+.+++++|+++|||+|+. +.+|
T Consensus 159 ~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~ 238 (413)
T PHA02875 159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEE 238 (413)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCc
Confidence 3455567778899999999999999999999999999988776 58899999999999999999999999976 3445
Q ss_pred CC
Q 007323 606 MQ 607 (608)
Q Consensus 606 ~T 607 (608)
.|
T Consensus 239 ~t 240 (413)
T PHA02875 239 CT 240 (413)
T ss_pred hH
Confidence 44
No 77
>PHA02946 ankyin-like protein; Provisional
Probab=98.49 E-value=6.4e-07 Score=93.54 Aligned_cols=69 Identities=28% Similarity=0.333 Sum_probs=61.7
Q ss_pred hhhHhHHH--hcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 540 ALKVNSAA--YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 540 ~~~L~~aa--~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
...+|.++ .....+.++.|+++|+++|..|..|.||||+|+..|+.+++++|+++|||+|.+|.+|+|+
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~Tp 108 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTP 108 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 44555544 4456789999999999999999999999999999999999999999999999999999985
No 78
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.47 E-value=2.9e-07 Score=98.25 Aligned_cols=69 Identities=25% Similarity=0.261 Sum_probs=61.7
Q ss_pred hhhHhHHHhcCC--HHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 540 ALKVNSAAYHGD--LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 540 ~~~L~~aa~~~~--~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+++|.|+..+. .+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|||+|.+|..|.|+
T Consensus 216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tp 286 (480)
T PHA03100 216 ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP 286 (480)
T ss_pred HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Confidence 678888888888 899999999999999889889999999999999999999999999999999988885
No 79
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.46 E-value=2.2e-07 Score=69.93 Aligned_cols=66 Identities=29% Similarity=0.420 Sum_probs=60.1
Q ss_pred hHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 542 ~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+.++..+|..+.++.....|.++|..- .|++|||+|+-.|+.++.++|+..||+++.+|+.|-|+
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITP 70 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITP 70 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcH
Confidence 4567788999999999999998887655 89999999999999999999999999999999999885
No 80
>PHA02730 ankyrin-like protein; Provisional
Probab=98.46 E-value=2.7e-07 Score=98.05 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=63.8
Q ss_pred chhhhhhhhHhHHHhcC---CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC--cHHHHHHHHhcCC--CCCCcCCCCC
Q 007323 534 KHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGV--DINLKGNSIM 606 (608)
Q Consensus 534 ~~~~~~~~~L~~aa~~~---~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~ga--~~~~~~~~g~ 606 (608)
..+..+.++||+|+..+ +.++++.|+++||+++..|..|+||||+|+..+ +.+++++|+++|+ ++++.+..|+
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d 115 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND 115 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence 45566889999999887 489999999999999999999999999999866 7999999999965 5587776665
Q ss_pred C
Q 007323 607 Q 607 (608)
Q Consensus 607 T 607 (608)
+
T Consensus 116 ~ 116 (672)
T PHA02730 116 F 116 (672)
T ss_pred c
Confidence 4
No 81
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.45 E-value=1.5e-05 Score=84.61 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=57.7
Q ss_pred CcccccceEECCCChhHHH---------HHHHHHHHHHHHHHHhchhee-eccCC-CcCeehHH-HHHHHHHHHHHHhhc
Q 007323 57 FRHFSRNLVFHPDNRWYRA---------WTKFILIWAVYSSIFTPVEFG-FFRGL-SKNLYVLD-IVGQIAFLFDIVLQF 124 (608)
Q Consensus 57 ~~~~~~~~~~~P~s~~~~~---------w~~~~~~~~~~~~~~~p~~~~-f~~~~-~~~~~~~~-~~~~~~f~~d~~~~f 124 (608)
.|..+..+++.|.++|+.. ++.+++++++.+++.+...-. ..... +..+..++ +++-+||++|+.++.
T Consensus 1098 ~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKV 1177 (1956)
T KOG2302|consen 1098 LRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKV 1177 (1956)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHH
Confidence 3666778899999998854 444555566666666655321 11111 12234454 899999999999885
Q ss_pred e-eeEEeCCCcEEeeccHHHHHHHhhc-cchhHhhhhc
Q 007323 125 C-LAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCM 160 (608)
Q Consensus 125 ~-t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl~s~l 160 (608)
. .|.+-.+ ..|+++ |-.+|.+-++
T Consensus 1178 VALGl~fge------------~aYl~ssWN~LDgflv~ 1203 (1956)
T KOG2302|consen 1178 VALGLYFGE------------QAYLRSSWNVLDGFLVA 1203 (1956)
T ss_pred Hhhhhccch------------HHHHHHHHHhhhHHHHH
Confidence 3 3333222 789998 6688875443
No 82
>PHA02878 ankyrin repeat protein; Provisional
Probab=98.45 E-value=3.1e-07 Score=97.66 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=69.4
Q ss_pred cccccchhhhhhhhHhHHHhc-CCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323 529 TFHISKHEAELALKVNSAAYH-GDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~-~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 606 (608)
...++..+..+.+|+|+|+.. +..+.++.|+++|++++..+. .|.||||.| .++.+++++|+++|||+|+.|..|.
T Consensus 224 ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~ 301 (477)
T PHA02878 224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKL 301 (477)
T ss_pred CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCC
Confidence 345666778889999999975 689999999999999999886 799999999 5678999999999999999999999
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 302 Tp 303 (477)
T PHA02878 302 TP 303 (477)
T ss_pred CH
Confidence 96
No 83
>PHA02874 ankyrin repeat protein; Provisional
Probab=98.44 E-value=3.6e-07 Score=95.96 Aligned_cols=75 Identities=21% Similarity=0.171 Sum_probs=54.6
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+..+.+|+|.|+..+..+.+++|++.|++++..+..|.||||.|+..++ +.+++|+ .|+++|.+|.+|+|+
T Consensus 183 ~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~Tp 257 (434)
T PHA02874 183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTP 257 (434)
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCH
Confidence 34445566778888888888888888888888877777778888888877654 4555555 577888888888774
No 84
>PHA02795 ankyrin-like protein; Provisional
Probab=98.43 E-value=2.9e-07 Score=93.13 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=66.7
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC--------cHHHHHHHHhcCCCCCCcC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--------YEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--------~~~~v~~Ll~~ga~~~~~~ 602 (608)
.++..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..| +.+++++|+++|++++..+
T Consensus 213 DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~ 292 (437)
T PHA02795 213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK 292 (437)
T ss_pred CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence 45666778899999999999999999999999999999999999999999988 4699999999999998765
Q ss_pred CC
Q 007323 603 NS 604 (608)
Q Consensus 603 ~~ 604 (608)
..
T Consensus 293 ~~ 294 (437)
T PHA02795 293 LA 294 (437)
T ss_pred HH
Confidence 43
No 85
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=98.41 E-value=3.8e-07 Score=90.48 Aligned_cols=170 Identities=18% Similarity=0.315 Sum_probs=95.1
Q ss_pred eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccchhHhhhhccHHHHHhhcCchhHHHHHHHHHHH
Q 007323 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLY 184 (608)
Q Consensus 105 ~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~ 184 (608)
+|++..++..+-+.--++-|..+|...- .+-.+.-.|+++++..+||.+-..... +.+|.++..+
T Consensus 92 iw~lq~~~a~is~~~ti~~~yl~ysgsv-----------vrllinihfllelitsfpfii~ifips----ltylyvpvfl 156 (1087)
T KOG3193|consen 92 IWFLQTMFACISMVYTILVFYLSYSGSV-----------VRLLINIHFLLELITSFPFIISIFIPS----LTYLYVPVFL 156 (1087)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccch-----------hhhhhhHHHHHHHhhcccceeeeeccc----cceeechhhh
Confidence 3556666666666677777788876322 122333367899999999876543332 4455555555
Q ss_pred HHHHHHHHHHHHHHHhh----h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCccccc
Q 007323 185 RVRKVSQFFHKMEKDIR----I--NYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFR 258 (608)
Q Consensus 185 r~~r~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 258 (608)
..+-....+..+.+++. . +..+.++.. +....+|+.|.-.+... ++.
T Consensus 157 ncwlakgalqammndl~r~~~~s~sal~~ql~l-------l~s~l~clift~~c~i~--------------------h~q 209 (1087)
T KOG3193|consen 157 NCWLAKGALQAMMNDLNRKSFISSSALFRQLLL-------LFSVLACLIFTGMCSIE--------------------HLQ 209 (1087)
T ss_pred hhhhhhhHHHHhhhhHhHHhhhhHHHHHHHHHH-------HHHHHHHHHHhhhhhHH--------------------HHH
Confidence 55433333322222211 1 112222222 23334555543221100 000
Q ss_pred cc-chHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 259 EI-GFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316 (608)
Q Consensus 259 ~~-~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~ 316 (608)
.. .--.....|+||+++|.+||||||..|.-|...+..++++.+..++..--+-.++.
T Consensus 210 ra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~ 268 (1087)
T KOG3193|consen 210 RARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQ 268 (1087)
T ss_pred HccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHH
Confidence 00 00012347899999999999999999999999988877766666665555555544
No 86
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.41 E-value=2.6e-07 Score=65.59 Aligned_cols=50 Identities=32% Similarity=0.430 Sum_probs=32.6
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHH
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLA 579 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A 579 (608)
...+..+..+.+|+|.|+..++.+.++.|++.|++++.+|..|+||+|+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45677788889999999999999999999999999999999999999987
No 87
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=98.41 E-value=4e-07 Score=98.67 Aligned_cols=79 Identities=18% Similarity=0.089 Sum_probs=68.9
Q ss_pred ccccchhhhhhhhHhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHh--------------cCcHHHHHHHHh
Q 007323 530 FHISKHEAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS--------------RGYEEIMTFLIQ 593 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~--~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~--------------~~~~~~v~~Ll~ 593 (608)
..++..+..+.+|+|.|+. .+..+.++.|+++|++++..|..|+||||.|+. .++.+++++|++
T Consensus 308 AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~ 387 (764)
T PHA02716 308 VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS 387 (764)
T ss_pred CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH
Confidence 3455667788999998764 457899999999999999999999999999865 368899999999
Q ss_pred cCCCCCCcCCCCCCC
Q 007323 594 KGVDINLKGNSIMQI 608 (608)
Q Consensus 594 ~ga~~~~~~~~g~T~ 608 (608)
+|||++.+|..|+|+
T Consensus 388 ~GADIn~kn~~G~TP 402 (764)
T PHA02716 388 LGADITAVNCLGYTP 402 (764)
T ss_pred CCCCCCCcCCCCCCh
Confidence 999999999999995
No 88
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.40 E-value=3.9e-07 Score=95.12 Aligned_cols=77 Identities=27% Similarity=0.292 Sum_probs=71.2
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCC---CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN---RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~---~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
.++..|..+.+|+|.|+..|+..+++.|+..|+..+ ..|.+|.||||.|+..|+..+|+.|+.+||++..+|..|.|
T Consensus 333 llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~S 412 (929)
T KOG0510|consen 333 LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKS 412 (929)
T ss_pred ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccc
Confidence 456778889999999999999999999999999887 46999999999999999999999999999999999998876
No 89
>PHA02792 ankyrin-like protein; Provisional
Probab=98.40 E-value=5.8e-07 Score=94.52 Aligned_cols=70 Identities=20% Similarity=0.124 Sum_probs=62.3
Q ss_pred hhhhHhHHHhcCCHH---HHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 539 LALKVNSAAYHGDLY---QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~---~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+|+|.|+.....+ .++.++.+|+++|..|..|.||||.|+..++.+++++|+++||++|.+|..|.|+
T Consensus 374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~Tp 446 (631)
T PHA02792 374 NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTC 446 (631)
T ss_pred ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 468888876665543 4788899999999999999999999999999999999999999999999999984
No 90
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.37 E-value=8.6e-07 Score=78.47 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=62.6
Q ss_pred cccchh-hhhhhhHhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323 531 HISKHE-AELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 531 ~i~~~~-~~~~~~L~~aa~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 600 (608)
.++..+ ..+.+|+|+|+..+..+.++.|+. .|++++..|..|.||||+|+..|+.+++++|+.+||+.++
T Consensus 83 din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~ 154 (154)
T PHA02736 83 DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV 154 (154)
T ss_pred CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 344454 468899999999999999999997 5999999999999999999999999999999999999863
No 91
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=98.36 E-value=2.4e-06 Score=84.22 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCC--
Q 007323 210 VKLIAVELYCSHIAACIFYYLATTLPPEQ---EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGD-- 284 (608)
Q Consensus 210 ~~l~~~~~~~~h~~ac~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygd-- 284 (608)
+.+++..++...+||++||.++....+-. ....|-+.. .....+..||+|++.|+||+|||.
T Consensus 39 ~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv-------------~~~~~f~~aF~FSveT~tTIGYG~~~ 105 (336)
T PF01007_consen 39 LLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCV-------------SNVNSFTSAFLFSVETQTTIGYGSRY 105 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSE-------------CT-TTHHHHHHHHHHHHTT---SSSE
T ss_pred ehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCce-------------ecccchhhheeEEEEEEEEeccCCcc
Confidence 33445566667778999999875422111 111111110 123467899999999999999998
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323 285 VHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 285 i~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
++|......+++++-+++|+++.|+++|.+.+-+++.
T Consensus 106 ~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 106 PTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp B-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6788888889999999999999999999999988873
No 92
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=7.5e-07 Score=88.15 Aligned_cols=66 Identities=29% Similarity=0.411 Sum_probs=62.3
Q ss_pred HhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 543 L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
|.-|+..|.+++++..+..-.|+...++.|.||||-|...||.+||++|+..|||+|+.|.+|||+
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTP 619 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTP 619 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCch
Confidence 345788999999999999999999999999999999999999999999999999999999999995
No 93
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.34 E-value=1e-06 Score=96.57 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=44.3
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-------CCCCCCcCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-------GVDINLKGNS 604 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-------ga~~~~~~~~ 604 (608)
++..+..+.+++|+|+..++.++++.|++.|++++..|..|.||||+|+..|+.+++++|+.+ |++++..+..
T Consensus 108 in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~ 187 (664)
T PTZ00322 108 PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFT 187 (664)
T ss_pred CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccC
Confidence 334444555666666666666666666666666666666666666666666666666666555 5555555555
Q ss_pred CCC
Q 007323 605 IMQ 607 (608)
Q Consensus 605 g~T 607 (608)
|.+
T Consensus 188 g~~ 190 (664)
T PTZ00322 188 GKP 190 (664)
T ss_pred CCC
Confidence 544
No 94
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.32 E-value=5.6e-07 Score=79.24 Aligned_cols=71 Identities=23% Similarity=0.224 Sum_probs=66.0
Q ss_pred hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....++..|+..+..+++++|+.++.|+|..|..|.|||-+|+.-+|.+||+.|+..|||++..+..|.++
T Consensus 192 ~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~ 262 (296)
T KOG0502|consen 192 YRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWI 262 (296)
T ss_pred hhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcH
Confidence 34456788999999999999999999999999999999999999999999999999999999999999874
No 95
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.32 E-value=5.7e-07 Score=66.76 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=38.0
Q ss_pred cccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccCC
Q 007323 60 FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL 101 (608)
Q Consensus 60 ~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~ 101 (608)
..+.++|||.|.++.+||++++++++++++++|+.++|..+.
T Consensus 33 ~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 33 SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 346789999999999999999999999999999999997553
No 96
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.31 E-value=6.2e-07 Score=89.59 Aligned_cols=72 Identities=33% Similarity=0.391 Sum_probs=68.5
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+.+.+|.|+..|..++++.|+.+|.+++..|.+||||||.|+..|+.+.+++|+.+|++.+..+..|.|+
T Consensus 196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p 267 (527)
T KOG0505|consen 196 ARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETP 267 (527)
T ss_pred cccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCC
Confidence 347899999999999999999999999999999999999999999999999999999999999999999875
No 97
>PHA02798 ankyrin-like protein; Provisional
Probab=98.31 E-value=9.5e-07 Score=94.16 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=41.9
Q ss_pred ccchhhhhhhhHhHHHhcCC---HHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCc----HHHHHHHHhcCCCCCCcCC
Q 007323 532 ISKHEAELALKVNSAAYHGD---LYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGY----EEIMTFLIQKGVDINLKGN 603 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~---~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~~~ 603 (608)
++..+..+.+|+|.++..+. .++++.|+++|++++..+ ..|.||||.+...+. .+++++|+++|++++..+.
T Consensus 138 vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~ 217 (489)
T PHA02798 138 TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK 217 (489)
T ss_pred ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence 34444555566666655554 566666666666665553 345566665554432 3556666666666665555
Q ss_pred CCCC
Q 007323 604 SIMQ 607 (608)
Q Consensus 604 ~g~T 607 (608)
.|.|
T Consensus 218 ~~~~ 221 (489)
T PHA02798 218 SHKK 221 (489)
T ss_pred cccc
Confidence 5543
No 98
>PHA03100 ankyrin repeat protein; Provisional
Probab=98.30 E-value=1e-06 Score=94.13 Aligned_cols=76 Identities=26% Similarity=0.403 Sum_probs=60.8
Q ss_pred cccchhhhhhhhHhHHHhcC--CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHG--DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~--~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 606 (608)
..+..+..+.+++|.|+..+ ..+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..+..|.
T Consensus 133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 210 (480)
T PHA03100 133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETL 210 (480)
T ss_pred CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCC
Confidence 34455566778888888888 78888888888888888888888888888888888888888888888888877774
No 99
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.25 E-value=2.1e-06 Score=90.21 Aligned_cols=73 Identities=29% Similarity=0.322 Sum_probs=64.0
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCC---------C--------------CCCchHHhHHHhcCcHHHHHHHH
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRT---------D--------------YDGRSPLHLAASRGYEEIMTFLI 592 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~---------d--------------~~g~tpL~~A~~~~~~~~v~~Ll 592 (608)
+-.+.++||.|..+.+.+.++.|++.|||++++ | +.|..||..|+..++.+++++|+
T Consensus 181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 355678999999999999999999999999764 1 23678999999999999999999
Q ss_pred hcCCCCCCcCCCCCCC
Q 007323 593 QKGVDINLKGNSIMQI 608 (608)
Q Consensus 593 ~~ga~~~~~~~~g~T~ 608 (608)
++|||+|++|..|+||
T Consensus 261 ~~gAd~~aqDS~GNTV 276 (782)
T KOG3676|consen 261 AHGADPNAQDSNGNTV 276 (782)
T ss_pred hcCCCCCccccCCChH
Confidence 9999999999999986
No 100
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.23 E-value=1.2e-06 Score=87.64 Aligned_cols=77 Identities=27% Similarity=0.359 Sum_probs=71.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+.+..+++|-++...+.+++++++++|+++|..|..||||||.|+..||..++++|+.+||++-+.|.+|..|
T Consensus 66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P 142 (527)
T KOG0505|consen 66 PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMP 142 (527)
T ss_pred ccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCc
Confidence 35667788999999999999999999999999999999999999999999999999999999999998888877653
No 101
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.23 E-value=1.7e-06 Score=79.36 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=68.7
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCC-CCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
.+..|..+..++..|+..|+++.++.+++.|+|+|.. +..+.||||.|+..|+.+++++|++.||.+...|.=|+|
T Consensus 38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrT 114 (396)
T KOG1710|consen 38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRT 114 (396)
T ss_pred hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhh
Confidence 4556777888999999999999999999999999864 566899999999999999999999999999999988877
No 102
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.22 E-value=2.1e-06 Score=91.64 Aligned_cols=71 Identities=17% Similarity=0.183 Sum_probs=33.3
Q ss_pred hhhhhhHhHHHhc--CCHHHHHHHHHcCCCCCC-CCCCCchHHhHHHhcC----cHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 537 AELALKVNSAAYH--GDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 537 ~~~~~~L~~aa~~--~~~~~~~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~----~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
..+.+|+|.++.. ++.+.++.|+++|++++. .+..|.||||.|+..+ +.+++++|+++||++|.+|..|.|
T Consensus 143 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t 220 (494)
T PHA02989 143 SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSES 220 (494)
T ss_pred CCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCcccc
Confidence 3444455544322 344555555555555544 3444555555444332 445555555555555555444433
No 103
>PHA02917 ankyrin-like protein; Provisional
Probab=98.22 E-value=2.1e-06 Score=93.45 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=52.7
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 551 ~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+.++.++.+|+++|.+|..|.||||.|+..++.+++++|+++|||+|++|..|+|+
T Consensus 431 ~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~ 488 (661)
T PHA02917 431 ILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTC 488 (661)
T ss_pred hHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 3567789999999999999999999999999999999999999999999999999884
No 104
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.22 E-value=2.8e-06 Score=94.57 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=63.2
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+...+++.+...++.+.+++|++.|++++..|..|+||||.|+..|+.++|++|+++||+++..+.+|.|+
T Consensus 143 ~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~ 214 (682)
T PHA02876 143 IEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSV 214 (682)
T ss_pred hhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCH
Confidence 334566778888899999999999999999999999999999999999999999999999999998888874
No 105
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.20 E-value=2.8e-06 Score=93.11 Aligned_cols=69 Identities=33% Similarity=0.522 Sum_probs=65.6
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
...++.++..|+.+.++.|+..|+++|..|..|+||||+|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~Tp 151 (664)
T PTZ00322 83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151 (664)
T ss_pred HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 456888999999999999999999999999999999999999999999999999999999999999985
No 106
>PHA02989 ankyrin repeat protein; Provisional
Probab=98.19 E-value=3.9e-06 Score=89.62 Aligned_cols=79 Identities=14% Similarity=0.134 Sum_probs=61.8
Q ss_pred ccccchhhhhhhhHhHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCchHHhHHHhc--CcHHHHHHHHhcCCCCCC-cC
Q 007323 530 FHISKHEAELALKVNSAAYH---GDLYQLEGLIRAGADP-NRTDYDGRSPLHLAASR--GYEEIMTFLIQKGVDINL-KG 602 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~-~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~~~~-~~ 602 (608)
.+++..+..+.+|++.|+.. +..+.++.|+++|+++ +..|..|.||||.|+.. ++.+++++|+++|||++. .+
T Consensus 99 adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~ 178 (494)
T PHA02989 99 ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTS 178 (494)
T ss_pred CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccc
Confidence 34555666678888876544 5788889999999998 78888899999987653 578899999999999888 57
Q ss_pred CCCCCC
Q 007323 603 NSIMQI 608 (608)
Q Consensus 603 ~~g~T~ 608 (608)
..|.|+
T Consensus 179 ~~g~tp 184 (494)
T PHA02989 179 LYGLTP 184 (494)
T ss_pred ccCCCh
Confidence 788775
No 107
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.18 E-value=4.2e-06 Score=82.35 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=67.7
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
...++...||..+..++++.+-.|+..|+++|-.+ ..|.||||+|+..|+..-+++|+-.|||+++.|.+|+|+
T Consensus 129 ~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP 203 (669)
T KOG0818|consen 129 TAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTP 203 (669)
T ss_pred hHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcH
Confidence 34556678999999999999999999999999887 459999999999999999999999999999999999985
No 108
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.17 E-value=2.7e-06 Score=94.69 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=64.0
Q ss_pred ccchhhhhhhhHhHHHhcCC-HHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC-cHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGD-LYQLEGLIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~-~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+++|.|+..+. ...++.|++.|+++|..|..|+||||.|+..+ +.+++++|+++|||+|.+|..|.|+
T Consensus 401 ~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tp 479 (682)
T PHA02876 401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYP 479 (682)
T ss_pred ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 34445556688888876555 45678889999999999999999999999876 6799999999999999999999885
No 109
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.13 E-value=2.2e-06 Score=88.90 Aligned_cols=74 Identities=27% Similarity=0.400 Sum_probs=69.4
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+..|+|+|+.+|+.+.+++++.++..+|.....|.||||.|+++||.+++.+|+.+|+|+-++|+++.|+
T Consensus 78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ 151 (854)
T KOG0507|consen 78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETV 151 (854)
T ss_pred hhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccH
Confidence 33677889999999999999999999999999999999999999999999999999999999999999998874
No 110
>PHA02730 ankyrin-like protein; Provisional
Probab=98.13 E-value=4.1e-06 Score=89.21 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC-CCCCC
Q 007323 553 YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN-SIMQI 608 (608)
Q Consensus 553 ~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~T~ 608 (608)
++++.|+.+|+++|..|..|.||||+|+..++.+++++|+++||++|++|. .|.|+
T Consensus 443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~Ta 499 (672)
T PHA02730 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTA 499 (672)
T ss_pred HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCH
Confidence 568888999999999999999999999988889999999999999998886 47763
No 111
>PHA02917 ankyrin-like protein; Provisional
Probab=98.12 E-value=4e-06 Score=91.36 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=65.9
Q ss_pred cccccchhhhhhhhHhHH--HhcCCHHHHHHHHHcCCCCCCCCC---CC-----------chHHhHHHh-----------
Q 007323 529 TFHISKHEAELALKVNSA--AYHGDLYQLEGLIRAGADPNRTDY---DG-----------RSPLHLAAS----------- 581 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~a--a~~~~~~~~~~Ll~~ga~~~~~d~---~g-----------~tpL~~A~~----------- 581 (608)
...++..+..+.+|++.+ +..++.+++++|+++|++++..|. .| .||||.|+.
T Consensus 126 Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~ 205 (661)
T PHA02917 126 GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRA 205 (661)
T ss_pred CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccc
Confidence 445566677788999854 456899999999999999986543 34 599999975
Q ss_pred cCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 582 RGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 582 ~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++.+++++|+++|||+|.+|.+|+|+
T Consensus 206 ~~~~eiv~~Li~~Gadvn~~d~~G~Tp 232 (661)
T PHA02917 206 YVRPEVVKCLINHGIKPSSIDKNYCTA 232 (661)
T ss_pred cCcHHHHHHHHHCCCCcccCCCCCCcH
Confidence 468999999999999999999999985
No 112
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.11 E-value=2.3e-06 Score=60.36 Aligned_cols=37 Identities=41% Similarity=0.623 Sum_probs=30.8
Q ss_pred CchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 572 GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 572 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
|+||+|.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~ 37 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTP 37 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--H
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 7899999999999999999999999999999999984
No 113
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=98.08 E-value=3.9e-06 Score=93.33 Aligned_cols=76 Identities=22% Similarity=0.289 Sum_probs=70.7
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+.......+++|.++..+....++.++.+|++++.++..|.||||.|+..|+.++|++|+++|||++++++.|+|+
T Consensus 501 ~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TP 576 (1143)
T KOG4177|consen 501 NLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTP 576 (1143)
T ss_pred CccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCCh
Confidence 3344566788999999999999999999999999999999999999999999999999999999999999999996
No 114
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.08 E-value=7.7e-06 Score=77.50 Aligned_cols=79 Identities=29% Similarity=0.405 Sum_probs=71.4
Q ss_pred ccccchhhhhhhhHhHHHhcCC-----HHHHHHHHHcCC---CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc
Q 007323 530 FHISKHEAELALKVNSAAYHGD-----LYQLEGLIRAGA---DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~-----~~~~~~Ll~~ga---~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 601 (608)
...+..+..+.+++|.++..++ .++++.+++.|+ ..+..|..|.||||+|+..|+.+++++|++.|++++.+
T Consensus 97 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~ 176 (235)
T COG0666 97 ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR 176 (235)
T ss_pred CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCccc
Confidence 3446677888999999999999 999999999999 55666999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 007323 602 GNSIMQI 608 (608)
Q Consensus 602 ~~~g~T~ 608 (608)
+..|.|.
T Consensus 177 ~~~g~t~ 183 (235)
T COG0666 177 NSYGVTA 183 (235)
T ss_pred ccCCCcc
Confidence 9999874
No 115
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.07 E-value=9e-06 Score=85.29 Aligned_cols=79 Identities=24% Similarity=0.327 Sum_probs=45.8
Q ss_pred cccccchhhhhhhhHhHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCC---CcCC
Q 007323 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIR-AG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN---LKGN 603 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~-~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---~~~~ 603 (608)
...++....+..+|+|.||..|+...++.|++ .| ...|..|..|.||||.|+..||-.++++|+.+||+.+ ..|.
T Consensus 296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~ 375 (929)
T KOG0510|consen 296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADS 375 (929)
T ss_pred CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccccc
Confidence 33444444555566666666666666666665 33 3445556666666666666666666666666666655 3355
Q ss_pred CCCC
Q 007323 604 SIMQ 607 (608)
Q Consensus 604 ~g~T 607 (608)
+|.|
T Consensus 376 dg~T 379 (929)
T KOG0510|consen 376 DGNT 379 (929)
T ss_pred CCch
Confidence 6655
No 116
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.05 E-value=3.2e-06 Score=95.04 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=66.1
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC--------------CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d--------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 602 (608)
..+.+|+|.|+..++.+.++.|+++|++++..+ ..|.||||.|+..|+.+++++|+++|||+|.+|
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d 205 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD 205 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence 457899999999999999999999999998653 358999999999999999999999999999999
Q ss_pred CCCCCC
Q 007323 603 NSIMQI 608 (608)
Q Consensus 603 ~~g~T~ 608 (608)
..|+|+
T Consensus 206 ~~g~T~ 211 (743)
T TIGR00870 206 SLGNTL 211 (743)
T ss_pred hhhhHH
Confidence 999984
No 117
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.96 E-value=2.4e-05 Score=66.02 Aligned_cols=76 Identities=30% Similarity=0.467 Sum_probs=66.7
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
...+..+.++++.++..+..+.++.++..|++++..+..|.||+|.|+..++.+++++|+++|.+++..|..|.|+
T Consensus 34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 109 (126)
T cd00204 34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTP 109 (126)
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence 4555667789999999999999999999998888888889999999999999999999999999999888888774
No 118
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.94 E-value=3.4e-05 Score=81.77 Aligned_cols=108 Identities=20% Similarity=0.309 Sum_probs=92.3
Q ss_pred HHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch-hh---hcCCC---cccEEE
Q 007323 406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV-SI---LCNIP---QPYTVQ 478 (608)
Q Consensus 406 l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~-~~---~~~~~---~~~~~~ 478 (608)
++.+++...+..|++|++.|++.+.+|.+.+|.+.+.....+|++..+..+.+|+.|-.. ++ +.+.| +...++
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~ak 190 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAK 190 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeee
Confidence 336778889999999999999999999999999999999999999999999999755443 33 33444 357899
Q ss_pred EeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 479 VCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 479 a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
|.++|.+..+|.+.|.+....+|+-..++++..+-
T Consensus 191 A~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmT 225 (1158)
T KOG2968|consen 191 AATDCTVARIPYTSFRESFHKNPESSIRIIQVVMT 225 (1158)
T ss_pred eecCceEEEeccchhhhhhccChHHHHHHHHHHHH
Confidence 99999999999999999999999998888776654
No 119
>PHA02792 ankyrin-like protein; Provisional
Probab=97.90 E-value=5.8e-05 Score=79.78 Aligned_cols=67 Identities=19% Similarity=0.027 Sum_probs=58.4
Q ss_pred hHhHHHhcCCHHHHHHHHHcCCCCCCCCCCC--chHHhHHHhcCcH---HHHHHHHhcCCCCCCcCCCCCCC
Q 007323 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDG--RSPLHLAASRGYE---EIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 542 ~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g--~tpL~~A~~~~~~---~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++.|+..++.+.++.|+++|++++..|..| .||||.|+..+.. +++++|+++|||+|.+|..|+|+
T Consensus 342 ~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TP 413 (631)
T PHA02792 342 KYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSI 413 (631)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcch
Confidence 4677899999999999999999999988774 6999998776554 46889999999999999999985
No 120
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=97.89 E-value=1.1e-05 Score=79.03 Aligned_cols=77 Identities=32% Similarity=0.411 Sum_probs=69.5
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-CCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~T~ 608 (608)
.+..+.+...++.+|+..|++..++.+.-.|.|.+..|++.+|+||+|+..|+.+++++|++. +.|++.+|.-|+|+
T Consensus 499 ~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP 576 (622)
T KOG0506|consen 499 GGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP 576 (622)
T ss_pred cCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence 334556667789999999999999999999999999999999999999999999999999974 89999999999885
No 121
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.88 E-value=7e-06 Score=85.79 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=70.7
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..|..+++.+|.++..+..+.++.|+++|++++..|. .|+||||-|...|+.|++-+|+++|+...++|++|.++
T Consensus 45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp 122 (1267)
T KOG0783|consen 45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP 122 (1267)
T ss_pred hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence 455677788999999999999999999999999999985 59999999999999999999999999999999999763
No 122
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=97.87 E-value=4.2e-05 Score=64.50 Aligned_cols=72 Identities=38% Similarity=0.521 Sum_probs=61.7
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+.+++++|+..++.+.++.+++.|.+.+..+..|.+|+|.|+..++.+++++|+++|++++..+..|.|+
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 76 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTP 76 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 345688899999999999999999998888888889999999999999999999999998888888777763
No 123
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.00015 Score=76.21 Aligned_cols=55 Identities=16% Similarity=0.443 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
+..|+||+.+++||+|||++.|.|..+|+++++..++|+=++..+++.++..+..
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~ 170 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD 170 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999999999999999999999999887764
No 124
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00022 Score=67.21 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhccccCCcccCCh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNL--------REMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~--------~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.|++|+||.++|+||+|+||..+-.. .-+.+..+++++|+.+++-.++.+.-.+.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~ 248 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFM 248 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999877432 33456667778888887766655544443
No 125
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00051 Score=66.53 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCc
Q 007323 209 IVKLIAVELYCSHIAACIFYYLATTLPPEQE---GYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 285 (608)
Q Consensus 209 ~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi 285 (608)
++...+.+++...+||++||+++...++-.. +.+|.+.. .-...+..||-|++-|=||+|||--
T Consensus 66 lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV-------------~nV~sf~sAFLFSiETQtTIGYG~R 132 (400)
T KOG3827|consen 66 LLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCV-------------MNVHSFTSAFLFSIETQTTIGYGFR 132 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcce-------------eeccchhhhheeeeeeeeeeecccc
Confidence 3444445555566799999999876543221 22333221 1234567899999999999999985
Q ss_pred ccC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323 286 HAV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 286 ~p~--~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
.+. =+...+..++-+++|+++-|+++|.+.+.+.+.
T Consensus 133 ~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 133 YVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred ccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 543 355566667778999999999999999888763
No 126
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.58 E-value=0.00011 Score=77.58 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=65.6
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC--CCCcCCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD--INLKGNSIMQI 608 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~g~T~ 608 (608)
+..||..||..+..+.+++|+++|||++++|..|+|.||..+.+-..++=.+++++||+ ..++|++|.|+
T Consensus 240 GEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTP 311 (782)
T KOG3676|consen 240 GEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTP 311 (782)
T ss_pred ccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCh
Confidence 34689999999999999999999999999999999999999999888889999999999 99999999986
No 127
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.56 E-value=0.00017 Score=69.04 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=58.4
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCC
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 605 (608)
...+..||..|+.+.+++|++.|.++|++|....+||.+|+..||.+.|++|+++||--.--.-+|
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G 102 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDG 102 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCc
Confidence 456788999999999999999999999999999999999999999999999999998654333333
No 128
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=97.55 E-value=0.00021 Score=67.51 Aligned_cols=74 Identities=35% Similarity=0.444 Sum_probs=66.6
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc-----HHHHHHHHhcCC---CCCCcCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY-----EEIMTFLIQKGV---DINLKGNSIM 606 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~-----~~~v~~Ll~~ga---~~~~~~~~g~ 606 (608)
.+.....+++.++..+....+..++..|++++..+..|.||||.|+..++ .+++++|++.|+ +.+.+|..|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~ 148 (235)
T COG0666 69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN 148 (235)
T ss_pred CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence 34446778899999999999999999999999999999999999999999 999999999999 6666699999
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 149 tp 150 (235)
T COG0666 149 TP 150 (235)
T ss_pred ch
Confidence 85
No 129
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.46 E-value=0.0004 Score=78.21 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=30.7
Q ss_pred CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 570 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 602 (608)
..|.||||.|+..|+.+++++|+++|||+|+++
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~ 158 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARA 158 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence 469999999999999999999999999999764
No 130
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.46 E-value=0.00014 Score=72.88 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=41.8
Q ss_pred ccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHh
Q 007323 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593 (608)
Q Consensus 528 ~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 593 (608)
....+...+..+.+|+|.|+..++.+.++.|+.+|+++...+..||+|||-|+..|+.+++..++.
T Consensus 44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr 109 (560)
T KOG0522|consen 44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR 109 (560)
T ss_pred hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence 444455555555666666666666666666666666666666666666666666666665554443
No 131
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.36 E-value=0.005 Score=51.98 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHH-ceeeeecCCCeEEccCC-ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC---
Q 007323 397 GCSSEFINQIVIR-LHEEFFLPGEVIMEKGN-VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI--- 471 (608)
Q Consensus 397 ~l~~~~l~~l~~~-~~~~~~~~g~~i~~~g~-~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~--- 471 (608)
+.|....++++.+ .+.....+|+.-..||. +.|.+-++++|++.+.. +|+ .+..+.|-++....++....
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g~--fLH~I~p~qFlDSPEW~s~~~s~ 88 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DGR--FLHYIYPYQFLDSPEWESLRPSE 88 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CCE--eeEeecccccccChhhhccccCC
Confidence 4688889999887 77889999999888886 46799999999999876 554 68889999999988876543
Q ss_pred --CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323 472 --PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (608)
Q Consensus 472 --~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~ 506 (608)
...+|+.|.++|..+.-+++.+..++...|-+..-
T Consensus 89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~v 125 (153)
T PF04831_consen 89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAV 125 (153)
T ss_pred CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHH
Confidence 34689999999999999999999999988755443
No 132
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.34 E-value=0.002 Score=58.25 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=76.1
Q ss_pred HHHHHHHceeeeecCCCeE-EccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEec
Q 007323 403 INQIVIRLHEEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE 481 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i-~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~ 481 (608)
...+....++..+++|..+ +.+....+.++++.+|.+.+.. .|| ..+....+..+||-...+.+....+..+|.+
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~ 90 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEG 90 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC--eEEEeccCCeEeecccccCCCCceEEEEEcC
Confidence 4455566778899999997 5444445689999999999942 343 5777888889999988776666668899999
Q ss_pred eeeeEEechhhHHHHHHHhh
Q 007323 482 LCRLLRIDKQSFTNIIDIYF 501 (608)
Q Consensus 482 ~~~l~~l~~~~~~~ll~~~~ 501 (608)
+|+++.+|.++|.++++++.
T Consensus 91 ~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 91 NCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred ccEEEEeeHHHHHHHHHHhc
Confidence 99999999999999998864
No 133
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.33 E-value=0.046 Score=61.78 Aligned_cols=56 Identities=21% Similarity=0.247 Sum_probs=31.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhchhee--------eccCCCcCeehHHHHHHHHHHHHHHhhc
Q 007323 69 DNRWYRAWTKFILIWAVYSSIFTPVEFG--------FFRGLSKNLYVLDIVGQIAFLFDIVLQF 124 (608)
Q Consensus 69 ~s~~~~~w~~~~~~~~~~~~~~~p~~~~--------f~~~~~~~~~~~~~~~~~~f~~d~~~~f 124 (608)
.+.+....+++++++++|.++---..+. +..-+.+.|.++|++..++.+.=+++.|
T Consensus 1171 ~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1171 EDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665554433221 1112345688899887777777666544
No 134
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.13 E-value=8e-05 Score=70.10 Aligned_cols=50 Identities=20% Similarity=0.392 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMT 315 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~ 315 (608)
+.-||||+++.+||+|||-.+|.|..+|+|+|+..++|+-+.-..+..++
T Consensus 81 F~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 81 FAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred cCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 44799999999999999999999999999999999998877665554443
No 135
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=97.12 E-value=0.00092 Score=61.86 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=56.9
Q ss_pred hhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCC
Q 007323 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQ 607 (608)
Q Consensus 541 ~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T 607 (608)
.++..+...++.+....|++.--++|.+|..|.+||..|+.+|+.++|++|++.|||+|..- ..+.|
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YT 81 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYT 81 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccccccc
Confidence 45555677788888888888877799999999999999999999999999999999999764 35554
No 136
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.10 E-value=0.00084 Score=67.59 Aligned_cols=68 Identities=29% Similarity=0.355 Sum_probs=57.6
Q ss_pred hhHhHHHhcCCHHHHHHHH--HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 541 LKVNSAAYHGDLYQLEGLI--RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 541 ~~L~~aa~~~~~~~~~~Ll--~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++|.++...+.+-....+ +.+..++..|..|.||||.|+..|+.+.++.|+.+|||+.++|++|||+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~ 91 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSP 91 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccH
Confidence 5578888777776665543 3456777889999999999999999999999999999999999999985
No 137
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.09 E-value=0.00094 Score=67.61 Aligned_cols=69 Identities=30% Similarity=0.341 Sum_probs=36.4
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCC--C--CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADP--N--RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~--~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
....|..|....++..+-.|+.+|... | ..+.+|+||||+|+..|+..+.++|+=+|+|+.++|..|.|
T Consensus 624 lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t 696 (749)
T KOG0705|consen 624 LGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRT 696 (749)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCch
Confidence 333444455555555555555555221 1 22344566666666666666666666556666666666555
No 138
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=97.08 E-value=0.00072 Score=70.92 Aligned_cols=79 Identities=22% Similarity=0.087 Sum_probs=72.6
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
...+.++....+.+|.|+.+++.+..+.|++..+-.+..|..|.+|||+|+..|+.++++.|+.++..+|+.+.+|.|+
T Consensus 40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp 118 (854)
T KOG0507|consen 40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP 118 (854)
T ss_pred ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence 3456677788999999999999999999999999888889999999999999999999999999999999999999874
No 139
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.05 E-value=0.014 Score=68.62 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=71.7
Q ss_pred eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHhhhhccHHHHHhhcCchhHHHHHHHHHH
Q 007323 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRL 183 (608)
Q Consensus 105 ~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl 183 (608)
+++.+.+.-.+|.+|+.+.... .+| +.|+++ |.++|.+-+. +.++.........+..||.+|+
T Consensus 475 l~~~~~vF~~lF~~Em~~ki~a-----------l~~----~~yF~~~~n~fD~~iv~-l~~~~~~~~~~~g~svLr~frl 538 (1592)
T KOG2301|consen 475 LYLGNVVFTGLFTVEMILKIYA-----------LGP----RNYFRRGWNIFDLIIVL-LSLLELLLKNVYGLSVLRSFRL 538 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------cCc----HHHHhhhcchheEEEEe-hhhHHhcccchHHHHHHHHHHH
Confidence 5677888888999999988532 222 667777 6699988777 6665555555566788888888
Q ss_pred HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 007323 184 YRVRKVSQFFHKMEKDIRI-NYMFSRIVKLIAVELYCSHIAACI 226 (608)
Q Consensus 184 ~r~~r~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~h~~ac~ 226 (608)
+|++|+.+++..+++.... ......+..|++++++++.++|-+
T Consensus 539 lRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~ 582 (1592)
T KOG2301|consen 539 LRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAI 582 (1592)
T ss_pred HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888777765432 233445566665555555555443
No 140
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.96 E-value=0.0011 Score=67.18 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=60.3
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 599 (608)
.+.++.++||.||..++....++|+-+|+|+.++|..|+|+|.+|.+.|..+|...|+.+|+..+
T Consensus 657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e 721 (749)
T KOG0705|consen 657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE 721 (749)
T ss_pred cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence 45667889999999999999999999999999999999999999999999999999999997643
No 141
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=96.94 E-value=0.001 Score=67.06 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=65.0
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCC--CCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~--~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++.+....+|+|+..|+-+++++++++|.. .+..|..|.|+||.|+..++..++++|++.||...-.|..|.|+
T Consensus 895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp 970 (1004)
T KOG0782|consen 895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTP 970 (1004)
T ss_pred eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCCh
Confidence 344556679999999999999999999953 35568889999999999999999999999999999999999985
No 142
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=96.81 E-value=0.0016 Score=40.25 Aligned_cols=32 Identities=28% Similarity=0.240 Sum_probs=29.3
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDY 570 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~ 570 (608)
+.+|+|+|+..+..+.++.|+++|++++.+|.
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 46899999999999999999999999998763
No 143
>PF13606 Ank_3: Ankyrin repeat
Probab=96.79 E-value=0.0015 Score=39.17 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=26.6
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNR 567 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~ 567 (608)
+.+|+|.|+..++.+++++|+++|+++|.
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 46899999999999999999999999874
No 144
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.62 E-value=0.061 Score=63.55 Aligned_cols=137 Identities=19% Similarity=0.117 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhchheeeccC---CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cc
Q 007323 77 TKFILIWAVYSSIFTPVEFGFFRG---LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SF 152 (608)
Q Consensus 77 ~~~~~~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f 152 (608)
..+++.+++.++...+..-..... ....+.+.|++.-.+|++|+++.... +.- .-|+++ |.
T Consensus 843 ~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia------------~Gf---~~y~rn~w~ 907 (1592)
T KOG2301|consen 843 EAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIA------------YGF---FFYFRNAWN 907 (1592)
T ss_pred HHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHH------------hHH---HHHHhhHHh
Confidence 344444444444444432222221 22346789999999999999998432 212 229999 77
Q ss_pred hhHhhhhccHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 153 IIDLFSCMPWDLIYKASGR-KEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFY 228 (608)
Q Consensus 153 ~iDl~s~lP~~~~~~~~~~-~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~ 228 (608)
++|++.+.-..+.+.+... ...++.+|.+|.+|-+|....+.+++.... .-..+..++..++..+++..++|++-.
T Consensus 908 ~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv 985 (1592)
T KOG2301|consen 908 WLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGV 985 (1592)
T ss_pred hhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877665544433222 334556666666666666555555332111 112233444444444455555555543
No 145
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=96.58 E-value=0.0031 Score=62.76 Aligned_cols=57 Identities=30% Similarity=0.388 Sum_probs=53.1
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHh
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 593 (608)
..+.+|||.|+..|....+++|.-.|+|+++.|..|.||+.+|...||.++.+.|++
T Consensus 165 ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e 221 (669)
T KOG0818|consen 165 EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE 221 (669)
T ss_pred ccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence 446799999999999999999999999999999999999999999999999887765
No 146
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.58 E-value=0.0016 Score=71.59 Aligned_cols=72 Identities=31% Similarity=0.332 Sum_probs=67.1
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....+++|.++..+....++.|++.|+++|..|..|++|+|.+...|+...+.+|+++||+.++.|.+|.++
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~ 725 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLP 725 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcch
Confidence 344678999999999999999999999999999999999999999999999999999999999999998763
No 147
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.55 E-value=0.0063 Score=62.88 Aligned_cols=112 Identities=16% Similarity=0.284 Sum_probs=86.9
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHcee-eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
+...++..+.|-|.+++-...++|+..|.. +.-.+|.+|...|+.-++.++|+.|.|++.. ++|+. ..+.-|+.
T Consensus 277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~---e~l~mGnS 351 (1283)
T KOG3542|consen 277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR---EELKMGNS 351 (1283)
T ss_pred HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce---EEeecccc
Confidence 344677888999999999999999987753 4556899999999999999999999999987 67764 56777999
Q ss_pred ecchhhhcCCCcccEEEE-eceeeeEEechhhHHHHHHH
Q 007323 462 FGEVSILCNIPQPYTVQV-CELCRLLRIDKQSFTNIIDI 499 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a-~~~~~l~~l~~~~~~~ll~~ 499 (608)
||...-...+-..-.+++ +.+|+...+..+++..++..
T Consensus 352 FG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 352 FGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred cCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 997654332222222333 67899999999999887764
No 148
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.15 E-value=0.0089 Score=34.83 Aligned_cols=29 Identities=59% Similarity=1.003 Sum_probs=26.2
Q ss_pred CCchHHhHHHhcCcHHHHHHHHhcCCCCC
Q 007323 571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN 599 (608)
Q Consensus 571 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 599 (608)
.|.||+|.|+..++.++++.|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 37899999999999999999999998775
No 149
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=95.98 E-value=0.025 Score=49.48 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=62.2
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 600 (608)
+++..|.-..+++++|+..+..+++.+|+.+| +.+...|..|.+++-+|-..|..+.++.|.+.-.+-..
T Consensus 4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~ 74 (223)
T KOG2384|consen 4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSH 74 (223)
T ss_pred CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCC
Confidence 46778888999999999999999999999999 89999999999999999999999999999887444333
No 150
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0056 Score=60.76 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=59.3
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 596 (608)
+++..|-+..+.||.||..|+.+++++|++. +.+++..|.+|+|||.-|...+|.+++++|-+...
T Consensus 531 D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 531 DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence 4566777888999999999999999999974 79999999999999999999999999999987644
No 151
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.73 E-value=0.012 Score=60.78 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee
Q 007323 373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY 452 (608)
Q Consensus 373 p~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~ 452 (608)
|+.|+.........+.|.+...|.++-...++.++...+...++...++|+.|+.+.+.|++++|.|-+. |
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----g---- 93 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----G---- 93 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----c----
Confidence 3444444333344567888999999999999999999999999999999999999999999999998653 2
Q ss_pred eEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEech
Q 007323 453 VSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490 (608)
Q Consensus 453 ~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~ 490 (608)
..+.|-..||.. .|+.|...+-.+.+++...++.
T Consensus 94 -qi~mp~~~fgkr---~g~~r~~nclllq~semivid~ 127 (1283)
T KOG3542|consen 94 -QIYMPYGCFGKR---TGQNRTHNCLLLQESEMIVIDY 127 (1283)
T ss_pred -ceecCccccccc---cccccccceeeecccceeeeec
Confidence 234455567765 5777889999999999988854
No 152
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.44 E-value=0.027 Score=56.55 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHcCCCCCC------CCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 550 GDLYQLEGLIRAGADPNR------TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 550 ~~~~~~~~Ll~~ga~~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+....++.|.+.+.+.|. .+..-.|+||+|+..|..++|..+|+.|+|+.++|..|.|+
T Consensus 402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtp 466 (591)
T KOG2505|consen 402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTP 466 (591)
T ss_pred CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCc
Confidence 445678888888877653 35667899999999999999999999999999999999986
No 153
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.0046 Score=64.95 Aligned_cols=47 Identities=26% Similarity=0.508 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhH--------HHHHHHHHHHHHHHHHHH
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREM--------VFIMIYVSFDMILGAYLI 311 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~--------~~~~~~~~~g~~~~a~~i 311 (608)
.|+.|+||+++++||+||||+.|.+...+ .+..++.++|....+...
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 35689999999999999999999998866 577777777877776655
No 154
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=95.10 E-value=0.015 Score=63.79 Aligned_cols=72 Identities=24% Similarity=0.313 Sum_probs=59.0
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc-CCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK-GNSIMQ 607 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~T 607 (608)
+....++|..||..++.+.++.++..|+++..+|..|.+||.+|+..||..+|+-|+.+.|++++. |+.+.|
T Consensus 754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt 826 (2131)
T KOG4369|consen 754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDT 826 (2131)
T ss_pred CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCc
Confidence 344556788888899999999999999999888988999998888888888888888888888875 455555
No 155
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=94.89 E-value=0.035 Score=61.14 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=31.2
Q ss_pred hhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc
Q 007323 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601 (608)
Q Consensus 541 ~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 601 (608)
+++..+|..+..++++.|+.+|++...++-...|||.+|+.-|+.++++.|+.+|+++|.+
T Consensus 826 t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSr 886 (2131)
T KOG4369|consen 826 TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR 886 (2131)
T ss_pred ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence 3344455555555555555555555444444455555555555555555555555555444
No 156
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.78 E-value=0.15 Score=55.54 Aligned_cols=136 Identities=15% Similarity=0.118 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhchheeec-cCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cch
Q 007323 76 WTKFILIWAVYSSIFTPVEFGFF-RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFI 153 (608)
Q Consensus 76 w~~~~~~~~~~~~~~~p~~~~f~-~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~ 153 (608)
-+.++.+++..+++.....-.-. ....+.+.+.++.+.++|++|.++.....- .++|.+. |--
T Consensus 1443 ld~fit~ii~LnvVtms~ehyqqp~sldealkycny~ft~vfV~EaV~klvafG---------------~rrFfkdrwnq 1507 (1956)
T KOG2302|consen 1443 LDQFITFIICLNVVTMSEEHYQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFG---------------ERRFFKDRWNQ 1507 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccHHHHhhhcceeeeehhHHHHHHHHHHHh---------------HHHHHhhhhhh
Confidence 34445555555555554422111 122345667788888899999998865431 2677776 557
Q ss_pred hHhhhhccHHH--HH-------hhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Q 007323 154 IDLFSCMPWDL--IY-------KASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIA 223 (608)
Q Consensus 154 iDl~s~lP~~~--~~-------~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ 223 (608)
+|+.-++-... .+ ...-+...+|+.|++|+-|++|+.+.-.+++..+. +...+-++..+-+.++++..+.
T Consensus 1508 ldlaivlls~mgitleeie~naalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiy 1587 (1956)
T KOG2302|consen 1508 LDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIY 1587 (1956)
T ss_pred hhHHHHHHHHhcccHhheeecccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 78643322111 00 01122345566666666666666555555544322 2233334444444444444444
Q ss_pred HHH
Q 007323 224 ACI 226 (608)
Q Consensus 224 ac~ 226 (608)
|.+
T Consensus 1588 aal 1590 (1956)
T KOG2302|consen 1588 AAL 1590 (1956)
T ss_pred HHH
Confidence 444
No 157
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=94.53 E-value=0.0093 Score=63.36 Aligned_cols=45 Identities=29% Similarity=0.453 Sum_probs=41.1
Q ss_pred CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC-CCCCC
Q 007323 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN-SIMQI 608 (608)
Q Consensus 564 ~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~T~ 608 (608)
-.|..|..|+|+||+|++.+..++++.|++||+|++.+|. .|+|.
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~ta 89 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTA 89 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchH
Confidence 3577899999999999999999999999999999999995 78873
No 158
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.37 E-value=8.1 Score=42.53 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=33.3
Q ss_pred hhCCHHHHHHHHHHHhHhhhc-----ccccccCCCHHHHHHHHHHc
Q 007323 370 QDIPISIRAKISQTLYLPYIE-----KVPLFKGCSSEFINQIVIRL 410 (608)
Q Consensus 370 ~~lp~~Lr~~i~~~~~~~~l~-----~~~~f~~l~~~~l~~l~~~~ 410 (608)
++||+.||+.|..+...+... +..++++|+++..+++..++
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 689999999999988776554 45678899999888887765
No 159
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.38 E-value=16 Score=40.98 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=14.9
Q ss_pred cCeehHHHHHHHHHHHHHHhhc
Q 007323 103 KNLYVLDIVGQIAFLFDIVLQF 124 (608)
Q Consensus 103 ~~~~~~~~~~~~~f~~d~~~~f 124 (608)
+.|.++|+++.++.++=++++.
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~ 519 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMI 519 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777666653
No 160
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.63 E-value=9.8 Score=41.83 Aligned_cols=130 Identities=13% Similarity=0.172 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccCCCCCCCCceecccccCC
Q 007323 177 YLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACI-----FYYLATTLPPEQEGYTWIGSLKMGD 251 (608)
Q Consensus 177 ~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~-----~~~~~~~~~~~~~~~~w~~~~~~~~ 251 (608)
++.++|++-++.+..++.-+. +++......+++.++.+++++.-|+|. ||+........ .|.......
T Consensus 474 V~S~lrl~~i~t~n~~lGPlq--ISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~----~~~~~~~~~- 546 (822)
T KOG3609|consen 474 VLSFLKLFYIFTMNPSLGPLQ--ISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKI----DQDYTKTTD- 546 (822)
T ss_pred HHHHHHHHHHhhccccccchh--hhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccc----ccccccccc-
Confidence 345555555555554444433 233344556666666666555555554 55544332221 111111000
Q ss_pred CCcccccccchHHHHHHHHHHHHHHhhccccCCccc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 252 YSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA-VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 252 ~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p-~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.+ +....=..+++|++-+++-++--++.- ....|-+..+++.+..++....++..+.+++.+
T Consensus 547 -~f------sti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnn 609 (822)
T KOG3609|consen 547 -SF------STIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSN 609 (822)
T ss_pred -cc------ccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHh
Confidence 11 122334478999998776544222211 123333333333333333334445555555554
No 161
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=91.42 E-value=0.067 Score=58.98 Aligned_cols=41 Identities=37% Similarity=0.530 Sum_probs=35.6
Q ss_pred HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323 560 RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 560 ~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 600 (608)
-.|..++.+|..||||||+|+.+|+..++..|.+.|++...
T Consensus 629 ~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~ 669 (975)
T KOG0520|consen 629 ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGA 669 (975)
T ss_pred ecccccccccCCCCcccchHhhcCHHHHHHHHHHhcccccc
Confidence 34566777899999999999999999999999998888764
No 162
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.67 E-value=14 Score=42.79 Aligned_cols=89 Identities=10% Similarity=0.055 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhchheeeccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhh
Q 007323 70 NRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLR 149 (608)
Q Consensus 70 s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~ 149 (608)
+++..+|..++..+.+..++...+...|... +..+-++=++-.+-+.+|-+=+...+ +++ .=+++++.-|-.
T Consensus 790 APIvkFw~~~l~yi~FL~lftYvlLv~~~~~-Ps~~Ew~~~~~iftl~~E~vRq~~~s--e~~-----~l~~kv~v~f~d 861 (1381)
T KOG3614|consen 790 APIVKFWLNVLSYIAFLLLFTYVLLVDFQPS-PSMWEWILFAWIFTLFLEEVRQIFIS--ESG-----LLPQKVRVYFAD 861 (1381)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHheeccCCC-CCccchhHHHHHHHHHHHHHHHHhcC--CCc-----chhhHHHHHHHH
Confidence 4556678777766666666665555666433 33332232333344445555443333 111 012343333444
Q ss_pred ccchhHhhhhccHHHHH
Q 007323 150 SSFIIDLFSCMPWDLIY 166 (608)
Q Consensus 150 ~~f~iDl~s~lP~~~~~ 166 (608)
.|+.+|+++++-|.+-+
T Consensus 862 ~wN~~d~~ai~~F~vG~ 878 (1381)
T KOG3614|consen 862 FWNLIDLLAILLFLVGP 878 (1381)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 48899999998776544
No 163
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=90.66 E-value=9.4 Score=39.91 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=14.0
Q ss_pred CcCeehHHHHHHHHHHHHHHhhc
Q 007323 102 SKNLYVLDIVGQIAFLFDIVLQF 124 (608)
Q Consensus 102 ~~~~~~~~~~~~~~f~~d~~~~f 124 (608)
.+.|.++|++..++.++=+++.+
T Consensus 241 ~~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 241 KSFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHH
Confidence 34577778776666555555444
No 164
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=90.02 E-value=0.77 Score=47.10 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=67.0
Q ss_pred HHHHHhccCcchhhhhhhcccccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHH
Q 007323 507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE 586 (608)
Q Consensus 507 il~~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~ 586 (608)
++....+-.+.+.....+.......+...+..+.+++|-|+..++..+++++.+.|+.....|..|.||-.-|...|..+
T Consensus 902 llh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~d 981 (1004)
T KOG0782|consen 902 LLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPD 981 (1004)
T ss_pred HHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCch
Confidence 34433333333444444444444444445566788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 007323 587 IMTFLIQK 594 (608)
Q Consensus 587 ~v~~Ll~~ 594 (608)
+..+|-+.
T Consensus 982 laayle~r 989 (1004)
T KOG0782|consen 982 LAAYLESR 989 (1004)
T ss_pred HHHHHhhh
Confidence 99998754
No 165
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=89.44 E-value=0.62 Score=40.40 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 262 ~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.......++|+++.+++.-| ++..|.+...|++.+++.++++++.+...+++++.+..
T Consensus 41 ~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~ 98 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV 98 (148)
T ss_dssp HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567788998888887744 78999999999999999999999999999999998865
No 166
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.64 E-value=0.92 Score=49.35 Aligned_cols=60 Identities=27% Similarity=0.197 Sum_probs=43.4
Q ss_pred hHhHHHhcCCHHHHHHHHHcCCCC---------C-CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc
Q 007323 542 KVNSAAYHGDLYQLEGLIRAGADP---------N-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601 (608)
Q Consensus 542 ~L~~aa~~~~~~~~~~Ll~~ga~~---------~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~ 601 (608)
++..|...+..+.++.++.+.... + ..-..+.||+..|+.+++.||++.|+.+|+.+..+
T Consensus 91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P 160 (822)
T KOG3609|consen 91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP 160 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence 344566666667777766543222 1 12245789999999999999999999999998765
No 167
>COG4709 Predicted membrane protein [Function unknown]
Probab=86.32 E-value=5.3 Score=35.32 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc----cccHHHHHhhC--CHHHHHHHHHHHhHhhhcccccccCCCHH
Q 007323 328 RDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES----SYTEASVLQDI--PISIRAKISQTLYLPYIEKVPLFKGCSSE 401 (608)
Q Consensus 328 ~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~----~~~~~~~l~~l--p~~Lr~~i~~~~~~~~l~~~~~f~~l~~~ 401 (608)
.+-++++++|++ ++|++.++.+..||+..+.+ +.+|+++.++| |.++-.|+..+.-.+..+.-|-+++....
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 455777888885 59999999999999877753 56699999976 77777888877777777777777666654
Q ss_pred HHHH
Q 007323 402 FINQ 405 (608)
Q Consensus 402 ~l~~ 405 (608)
.+..
T Consensus 82 ii~~ 85 (195)
T COG4709 82 IIAL 85 (195)
T ss_pred HHHH
Confidence 4433
No 168
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=85.33 E-value=0.87 Score=50.67 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCCCCC--CCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 554 QLEGLIRAGADPNRT--DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 554 ~~~~Ll~~ga~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..-..+|++.|.. -..|.|+||.|+..+....+++|+.+|+++|.+|..|.|+
T Consensus 636 ~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~p 692 (785)
T KOG0521|consen 636 RIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTP 692 (785)
T ss_pred hhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCc
Confidence 333334556666543 3568999999999999999999999999999999999875
No 169
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=83.94 E-value=2.9 Score=43.79 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChh
Q 007323 212 LIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLR 291 (608)
Q Consensus 212 l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~ 291 (608)
+.+.+.+.+|+.|-..|++....|.+.- ...+.. .+.+-..+.-.|+||+-..+..-|-|.-+|.+..
T Consensus 572 LW~lv~~SVhvVal~lYlLDrfSPFgRF--------k~~ds~----~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfS 639 (993)
T KOG4440|consen 572 LWLLVGLSVHVVALMLYLLDRFSPFGRF--------KVNDSE----EEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFS 639 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccce--------eeccCc----cchhhhcchhhhHHHHhHhhhccccCCCCCcchh
Confidence 3345567789999999998776544321 110000 0111223455899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 292 EMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 292 e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
-+++.+++.=+.+++.|--.+++++.+.
T Consensus 640 ARvLGmVWaGFaMIiVASYTANLAAFLV 667 (993)
T KOG4440|consen 640 ARVLGMVWAGFAMIIVASYTANLAAFLV 667 (993)
T ss_pred HHHHHHHHhhhheeeehhhhhhhhhhee
Confidence 9999999988888888877888877653
No 170
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=83.54 E-value=10 Score=34.31 Aligned_cols=33 Identities=9% Similarity=-0.004 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007323 201 RINYMFSRIVKLIAVELYCSHIAACIFYYLATT 233 (608)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~ 233 (608)
.......++..++..+++..++.++..+.-...
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 92 RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred cccccccccccccccccccccchhheecccccc
Confidence 333345678888888888888888998877654
No 171
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=82.49 E-value=1 Score=45.72 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=41.7
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHH
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~ 580 (608)
.+.-..++||+|+..+..+.+..+++.|+|+...|..|+||-.+++
T Consensus 426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 3444678999999999999999999999999999999999998887
No 172
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=81.69 E-value=20 Score=39.77 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=29.0
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 286 HAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (608)
Q Consensus 286 ~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~ 318 (608)
.|+.+..++++.++.++++++.|.-.+++++.+
T Consensus 630 nPKgtTskiMv~VWAfFavifLAsYTANLAAfM 662 (1258)
T KOG1053|consen 630 NPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM 662 (1258)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466889999999999999999998888888754
No 173
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=80.34 E-value=10 Score=34.21 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh----ccccHHHHHhhC--CHHHHHHHHHHHh
Q 007323 328 RDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE----SSYTEASVLQDI--PISIRAKISQTLY 385 (608)
Q Consensus 328 ~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~----~~~~~~~~l~~l--p~~Lr~~i~~~~~ 385 (608)
++-+++++++++ ++|++-++++.+||+...+ ++.+|+++.++| |+.+-+++..+..
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 455677788886 5999999999999988775 356799999986 7777777765543
No 174
>PLN03223 Polycystin cation channel protein; Provisional
Probab=79.66 E-value=1.4e+02 Score=35.47 Aligned_cols=16 Identities=31% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHhhc-cchhHhhhhc
Q 007323 145 LRYLRS-SFIIDLFSCM 160 (608)
Q Consensus 145 ~~yl~~-~f~iDl~s~l 160 (608)
+.|+++ |-|+|++.++
T Consensus 1208 laYFKSfWNwLEIl~Il 1224 (1634)
T PLN03223 1208 LAYFLSGWNYVDFASIG 1224 (1634)
T ss_pred hhHhccchHHHHHHHHH
Confidence 689999 6699995543
No 175
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=76.88 E-value=3.6 Score=22.83 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.4
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCCCCC
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGADPN 566 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~ 566 (608)
.++++.++..++.+.++.+++.|.+++
T Consensus 3 ~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 3 RTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 467888999999999999999988664
No 176
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=75.32 E-value=8.6 Score=28.05 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=31.1
Q ss_pred eeecCCCeEEccCCccC-eEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 413 EFFLPGEVIMEKGNVVD-QLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~i~~~g~~~~-~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..++||+..-..-.+.. .++++++|++.+.. +|+ ...+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE---RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE---EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE---EeEccCCEEE
Confidence 45778876655554555 89999999999874 443 3678888854
No 177
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=73.93 E-value=7 Score=35.76 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=44.4
Q ss_pred HHhcCCHHHHHHHHHcC-CCCCCC---CCCCchHHhHHHhcCcHHHHHHHHhcCCC
Q 007323 546 AAYHGDLYQLEGLIRAG-ADPNRT---DYDGRSPLHLAASRGYEEIMTFLIQKGVD 597 (608)
Q Consensus 546 aa~~~~~~~~~~Ll~~g-a~~~~~---d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 597 (608)
.....+..+.++.+..| +++|.. -..|.|-|.-|...+..+++.+|+++||-
T Consensus 224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 34556778899999999 788864 46799999999999999999999999984
No 178
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=71.83 E-value=12 Score=32.23 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=39.8
Q ss_pred ceeeeecCCCeEEccCC-ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 410 LHEEFFLPGEVIMEKGN-VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~-~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
+....+.||...-..-- ..+.+++|++|+..+...+.+|++.....+++||.+=.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 44567788887544432 25689999999999887555566667788999997654
No 179
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=71.10 E-value=21 Score=39.73 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 268 TSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 268 ~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.++|.++.++..-| ++..|.+...|++..++.++++++.+.-.+++++.++.
T Consensus 384 ~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~ 435 (656)
T KOG1052|consen 384 NCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTV 435 (656)
T ss_pred cchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56788888888888 66999999999999999999999999999999998865
No 180
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=69.24 E-value=15 Score=30.26 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhcccc-HHHHHhhCCH
Q 007323 331 MTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYT-EASVLQDIPI 374 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~-~~~~l~~lp~ 374 (608)
..++..|-.++-+-+-|+..-.+++-..|.+..+ |.+++++.|.
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCC
Confidence 3445566666677777888777777777776655 6778888884
No 181
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=66.71 E-value=12 Score=30.34 Aligned_cols=42 Identities=24% Similarity=0.406 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHhc------------cccHHHHHhhCCHHHHHHHHHH
Q 007323 342 RLGRDIRDQIIGHLRLQYES------------SYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 342 ~l~~~l~~rv~~y~~~~~~~------------~~~~~~~l~~lp~~Lr~~i~~~ 383 (608)
-||.+||..|...+...-.. ..+...++..||++||++|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 38999999999987654321 1235679999999999998754
No 182
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=66.53 E-value=12 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=23.6
Q ss_pred CeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 429 ~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+++.+|++|++.+.. ++|.. ..+++||.|=
T Consensus 26 ~E~~~vleG~v~it~--~~G~~---~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD--EDGET---VTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEE--TTTEE---EEEETTEEEE
T ss_pred CEEEEEEEeEEEEEE--CCCCE---EEEcCCcEEE
Confidence 788899999999875 46654 6789999764
No 183
>PHA01757 hypothetical protein
Probab=64.04 E-value=37 Score=25.16 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH
Q 007323 289 NLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLM 335 (608)
Q Consensus 289 ~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~ 335 (608)
+..|-.+--++...|.+...+++|.+.-+.....+.+.|.+..+++.
T Consensus 4 ~l~e~al~gf~a~~g~l~~~fii~e~~hlynek~~nenf~~AvD~m~ 50 (98)
T PHA01757 4 TLLEGALYGFFAVTGALSASFIIGEIVHLYNEKQRNENFAKAIDQMS 50 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhHhHHHHHHHHH
Confidence 44555666677888999999999999888766555666666665443
No 184
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=63.29 E-value=2.1e+02 Score=30.49 Aligned_cols=49 Identities=14% Similarity=0.400 Sum_probs=30.0
Q ss_pred HhhCCHHHHHHHHHHHhHhh-----hcccccccCCCHHHHHHHHHHceeeeecC
Q 007323 369 LQDIPISIRAKISQTLYLPY-----IEKVPLFKGCSSEFINQIVIRLHEEFFLP 417 (608)
Q Consensus 369 l~~lp~~Lr~~i~~~~~~~~-----l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ 417 (608)
+.+.|+.|-+.++.++.... +..-..+..++.+....++-++..+.|..
T Consensus 499 L~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnE 552 (971)
T KOG0501|consen 499 LYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNE 552 (971)
T ss_pred HHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhcc
Confidence 45889999888887765432 22223445566666666666666555544
No 185
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=57.31 E-value=61 Score=27.10 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=39.9
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
....++||...-..-.....+++|++|++.+... .+|++ ..+.+||.+--. .+.+ ..+++.++++++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-~~g~~---~~L~aGD~i~~~---~~~~--H~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-ATGEV---HPIRPGTMYALD---KHDR--HYLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-CCCEE---EEeCCCeEEEEC---CCCc--EEEEcCCCEEEEEE
Confidence 3457788875432211223699999999998621 12443 678999976533 2223 34444466666554
No 186
>PRK09108 type III secretion system protein HrcU; Validated
Probab=54.32 E-value=2.1e+02 Score=28.92 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH----HHHHHHHhhCCCCHHHHHHHHH
Q 007323 294 VFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKM----TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 294 ~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~----~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+...+..++..+..++++-.+..+.-+ .-+|.+++ +++++.+|+..=+++++.|+++
T Consensus 181 ~~~~~~~l~~~~~~~~~via~~D~~~q---r~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq 241 (353)
T PRK09108 181 LWTVLMKLLAVAAGVFLLVGAADWKIQ---RWLFIRDNRMSKDEVKREHKESEGDPHIKGERKR 241 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 334444444444444444444443332 22233332 6788888888888888888875
No 187
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=53.27 E-value=14 Score=38.88 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
...|+||++.....-| -||.|.+..+++...++-++.+++.+--.+++++.++
T Consensus 596 ifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 596 IFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred hhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 4589999999999888 8999999999999999888888887777777777654
No 188
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=52.92 E-value=33 Score=21.18 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 007323 330 KMTDLMKYINRNRLG-----RDIRDQIIGHL 355 (608)
Q Consensus 330 ~~~~~~~~m~~~~l~-----~~l~~rv~~y~ 355 (608)
+..+++++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788999999998 56888888874
No 189
>COG1422 Predicted membrane protein [Function unknown]
Probab=51.28 E-value=52 Score=29.75 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHc----CchhHHHHHHHHHHHHHHhhCC
Q 007323 303 DMILGAYLIGNMTALIVK----GSKTEKFRDKMTDLMKYINRNR 342 (608)
Q Consensus 303 g~~~~a~~i~~i~~~~~~----~~~~~~~~~~~~~~~~~m~~~~ 342 (608)
++++.|.++|.+.+++.. ..+-+++|+++++.++.+++.+
T Consensus 49 vilV~avi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~ 92 (201)
T COG1422 49 VILVAAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQ 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666554 2334677888888887776543
No 190
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=49.38 E-value=65 Score=28.13 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=40.8
Q ss_pred EccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhh
Q 007323 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 422 ~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
++..+ .+++|++++|.+.+...+ +|+ .....+++||+|=-. .|. +++-++.++|.++.+.+..
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d-~g~-~~~v~L~eGd~flvP---~gv--pHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTE-EGK-REDVPIREGDIFLLP---PHV--PHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEc-CCc-EEEEEECCCCEEEeC---CCC--CcccccCCCcEEEEEEeCC
Confidence 45433 689999999999986543 343 234678999976433 222 2344456777777777654
No 191
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=48.68 E-value=2.9e+02 Score=27.89 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++.+|+..=+++++.|+++
T Consensus 218 qEvKdE~Ke~EGdP~iK~rrR~ 239 (349)
T PRK12721 218 DDVKQEYKDSEGDPEIKQKRRE 239 (349)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888888888885
No 192
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=48.12 E-value=37 Score=33.51 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=7.6
Q ss_pred chhHhhhhccHH
Q 007323 152 FIIDLFSCMPWD 163 (608)
Q Consensus 152 f~iDl~s~lP~~ 163 (608)
|++..++++-|-
T Consensus 256 FiVEt~CIiWFt 267 (507)
T KOG1545|consen 256 FIVETLCIIWFT 267 (507)
T ss_pred HhHHHHHHHHHh
Confidence 377777776654
No 193
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=48.10 E-value=54 Score=27.45 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=33.5
Q ss_pred HceeeeecCCCeE-EccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 409 RLHEEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~i-~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
......+.||+-+ .+--...+..|+|++|+..+.. +|++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~~---~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGEE---VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCEE---EEecCCCEE
Confidence 3456677777774 4444446899999999999876 3443 467788753
No 194
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=47.99 E-value=1.3e+02 Score=23.48 Aligned_cols=41 Identities=5% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHc-C---chhHHHHHHHHHHHHHHhhCCCC
Q 007323 304 MILGAYLIGNMTALIVK-G---SKTEKFRDKMTDLMKYINRNRLG 344 (608)
Q Consensus 304 ~~~~a~~i~~i~~~~~~-~---~~~~~~~~~~~~~~~~m~~~~l~ 344 (608)
+.+++|.++.++--+.. + ...++-++++++.++.++++++.
T Consensus 46 v~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 46 VSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred HHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45556777777654444 2 22356677788888889888763
No 195
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.94 E-value=1.1e+02 Score=25.70 Aligned_cols=42 Identities=12% Similarity=0.327 Sum_probs=21.5
Q ss_pred HHHHHHHHHHc-C-chhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 007323 310 LIGNMTALIVK-G-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357 (608)
Q Consensus 310 ~i~~i~~~~~~-~-~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~ 357 (608)
+||.++..+.+ + .+..+.++.++..++-+.. -|+.|.+||..
T Consensus 11 iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~------yk~~V~~HF~~ 54 (128)
T PF06295_consen 11 IIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQ------YKQEVNDHFAQ 54 (128)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 34444444444 2 2234555666665555543 45667776654
No 196
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=46.43 E-value=3.3e+02 Score=27.61 Aligned_cols=22 Identities=0% Similarity=0.081 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++.+|+..=+++++.|+++
T Consensus 227 qEVKdE~Ke~EGdP~iK~r~Rq 248 (358)
T PRK13109 227 QEIKDEHKQAEGDPSVKARLRS 248 (358)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888888888875
No 197
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=46.02 E-value=1e+02 Score=21.56 Aligned_cols=15 Identities=7% Similarity=0.481 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhh
Q 007323 326 KFRDKMTDLMKYINR 340 (608)
Q Consensus 326 ~~~~~~~~~~~~m~~ 340 (608)
+.++|++.+.+-+.+
T Consensus 43 ~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 43 SMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHHHHHcc
Confidence 577888887776543
No 198
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=45.90 E-value=91 Score=28.33 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.2
Q ss_pred eeeeecCCCeE---------EccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVI---------MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i---------~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
-...+.||.+. +++.....++|++++|+..+...+.+|. .....+.+|+.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~-~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGE-ARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCc-EEEEEECCCCEEE
Confidence 34567777753 4444445699999999999887555554 2456788998653
No 199
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=45.52 E-value=53 Score=27.57 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=38.6
Q ss_pred ceeeeecCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 410 LHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~-~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
+....+.||..+-.---+ .+...++++|.+.+.. +|.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~---~g~~---~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL---EGEK---KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe---cCCc---eEecCCCEEEEC
Confidence 446788999988777776 6789999999999876 3543 678899987654
No 200
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.83 E-value=3.6e+02 Score=27.34 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=17.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++..|+..=+++++.|+++
T Consensus 225 qEVKdE~Ke~EGdP~iK~rrR~ 246 (359)
T PRK05702 225 QEVKDEHKQSEGDPEVKGRIRQ 246 (359)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6778888888888888888774
No 201
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.96 E-value=4.2e+02 Score=27.83 Aligned_cols=76 Identities=14% Similarity=0.303 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhccccHHHHHhhCCHHHHHHHHHHH-----hHhhhcccccccCCCHHHHHHHHHHceee---------
Q 007323 348 RDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTL-----YLPYIEKVPLFKGCSSEFINQIVIRLHEE--------- 413 (608)
Q Consensus 348 ~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~~i~~~~-----~~~~l~~~~~f~~l~~~~l~~l~~~~~~~--------- 413 (608)
-+-++.|++|+ +.|..|+..+..-. ..+........+.||+....+++...+..
T Consensus 249 mDGiK~YM~~R------------kV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~ 316 (536)
T KOG0500|consen 249 MDGIKQYMRYR------------KVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQ 316 (536)
T ss_pred HHHHHHHHHHh------------cccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHH
Confidence 36678888774 66777776654432 12333444556667777777776544322
Q ss_pred ----------eecCCCeEEccCCccCeEEEEEeeEEE
Q 007323 414 ----------FFLPGEVIMEKGNVVDQLYFVCLGKLE 440 (608)
Q Consensus 414 ----------~~~~g~~i~~~g~~~~~ly~i~~G~v~ 440 (608)
...-...+|.+|| |+..+|.+.
T Consensus 317 ~ce~~lL~elVLklk~qvfSPgD-----yICrKGdvg 348 (536)
T KOG0500|consen 317 DCEAGLLVELVLKLKPQVFSPGD-----YICRKGDVG 348 (536)
T ss_pred hcchhHHHHHHHHhcceeeCCCC-----eEEecCccc
Confidence 2222346777777 788888864
No 202
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=42.94 E-value=87 Score=29.03 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=46.1
Q ss_pred HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCC---------cccEEEE
Q 007323 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIP---------QPYTVQV 479 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~---------~~~~~~a 479 (608)
.++...+.+|+..-..-...+...+++.|.+.+.. .|. ....++. ..+.|.+.| +..++.|
T Consensus 30 GF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~---~g~--~f~~iG~-----R~SvFe~~p~~~vYvp~g~~~~vtA 99 (270)
T COG3718 30 GFRLLRLAAGESATEETGDRERCLVLVTGKATVSA---HGS--TFGEIGT-----RMSVFERKPPDSVYVPAGSAFSVTA 99 (270)
T ss_pred EEEEEEccCCCcccccCCCceEEEEEEeeeEEEee---ccc--hHhhccc-----ccccccCCCCCeEEecCCceEEEEe
Confidence 34566788999877766666778888999998764 222 1122210 122444433 4678999
Q ss_pred eceeeeEEechh
Q 007323 480 CELCRLLRIDKQ 491 (608)
Q Consensus 480 ~~~~~l~~l~~~ 491 (608)
.+++++.....-
T Consensus 100 ~t~~~vAvC~AP 111 (270)
T COG3718 100 TTDLEVAVCSAP 111 (270)
T ss_pred ecceEEEEEeCC
Confidence 999887766553
No 203
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=42.64 E-value=23 Score=39.96 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=51.7
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCC------CCCCchHHhHHHhcCcHHHHHHHHhc
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRT------DYDGRSPLHLAASRGYEEIMTFLIQK 594 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~------d~~g~tpL~~A~~~~~~~~v~~Ll~~ 594 (608)
++..|..+.+|||+|+..|+...+..|.+.|++.+.. .-.|.|+-..|...|+..+..+|.+.
T Consensus 634 i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 634 IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred cccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 4456788889999999999999999999888765432 34689999999999999988877654
No 204
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=42.25 E-value=4e+02 Score=27.36 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=18.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++.+|+..=+++++.|+++
T Consensus 225 qEvKdE~K~~EGdP~iK~r~Rq 246 (386)
T PRK12468 225 QDIRDEFKNQEGDPHVKGRIRQ 246 (386)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888888888885
No 205
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=42.21 E-value=3.8e+02 Score=27.07 Aligned_cols=22 Identities=5% Similarity=0.196 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++.+|+..=+++++.|+++
T Consensus 218 qEVKdE~K~~EGdP~iK~rrR~ 239 (347)
T TIGR00328 218 QEVKDELKQSEGDPEVKGRIRQ 239 (347)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888888888875
No 206
>PRK08156 type III secretion system protein SpaS; Validated
Probab=41.69 E-value=3.9e+02 Score=27.11 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=17.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++..|+..=+++++.|+++
T Consensus 213 qEvKdE~Ke~EGdP~iK~r~R~ 234 (361)
T PRK08156 213 QEVKREYKEQEGNPEIKSKRRE 234 (361)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888888888875
No 207
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=41.65 E-value=72 Score=32.48 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=36.1
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||...-.---...++.++++|++.+...+.+|+. ....+++||++=
T Consensus 69 ~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~-~~~~L~~GD~~~ 121 (367)
T TIGR03404 69 GVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN-YIDDVGAGDLWY 121 (367)
T ss_pred ceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE-EEeEECCCCEEE
Confidence 34456777775432222345799999999999887666654 445799999763
No 208
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=41.55 E-value=4.2e+02 Score=27.77 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=21.7
Q ss_pred cCeehHHHHHHHHHHHHHHhhceee
Q 007323 103 KNLYVLDIVGQIAFLFDIVLQFCLA 127 (608)
Q Consensus 103 ~~~~~~~~~~~~~f~~d~~~~f~t~ 127 (608)
..+.++|++..+-|.+++++....+
T Consensus 273 ~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 273 SPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999986665
No 209
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.22 E-value=5.1e+02 Score=27.99 Aligned_cols=26 Identities=8% Similarity=0.451 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 291 REMVFIMIYVSFDMILGAYLIGNMTA 316 (608)
Q Consensus 291 ~e~~~~~~~~~~g~~~~a~~i~~i~~ 316 (608)
.+.++-+++|.+..+.+.+.++.+..
T Consensus 424 P~~~~E~Vf~~~~w~mGVFvFslliG 449 (815)
T KOG0499|consen 424 PQTLFEIVFQLLNWFMGVFVFSLLIG 449 (815)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877777766655
No 210
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=38.58 E-value=4.3e+02 Score=26.64 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++.+|+..=+++++.|+++
T Consensus 217 qEvKdE~Ke~EGdP~iK~r~R~ 238 (342)
T TIGR01404 217 DEVKREYKEQEGDPEIKSKRRE 238 (342)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888888888885
No 211
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=38.30 E-value=64 Score=27.64 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=36.8
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc----eeeeE--EeCCCCeecch
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT----EDYVS--YLHPNSSFGEV 465 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~----~~~~~--~l~~G~~fGe~ 465 (608)
....+.||-.....-..+..+.+|.+|+..+.....++. ..... .+++||+|-..
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP 97 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVP 97 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeec
Confidence 345557877765544467899999999999776666551 22223 49999987543
No 212
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=37.57 E-value=4e+02 Score=26.00 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=7.9
Q ss_pred HHHhhccccCCccc
Q 007323 274 VVTMTTVGYGDVHA 287 (608)
Q Consensus 274 ~~t~ttvGygdi~p 287 (608)
+.-+++.|-+-..|
T Consensus 165 ~~~lp~CG~~C~~~ 178 (349)
T COG4792 165 FLYLPGCGLYCALP 178 (349)
T ss_pred HhhccccccchHHH
Confidence 34566667555544
No 213
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=36.72 E-value=60 Score=28.06 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=35.9
Q ss_pred eeeeecCCC--eEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchh
Q 007323 411 HEEFFLPGE--VIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS 466 (608)
Q Consensus 411 ~~~~~~~g~--~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ 466 (608)
....++||- ...+.....+++++|++|+..+.. +|.+ ..+++||+.|-.+
T Consensus 45 n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~e---~~lrpGD~~gFpA 96 (161)
T COG3837 45 NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGGE---TRLRPGDSAGFPA 96 (161)
T ss_pred ceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCee---EEecCCceeeccC
Confidence 345566654 455666677899999999998765 5544 6789999988653
No 214
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=36.67 E-value=1.7e+02 Score=29.85 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 263 WKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 263 ~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.--|+-+|-|++..+.+++-++........-.+++++.+++++.+.+.+.+++..++
T Consensus 98 Lg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iq 154 (371)
T PF10011_consen 98 LGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQ 154 (371)
T ss_pred HHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456888888899999888855542233333666777777778888888887777653
No 215
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=35.36 E-value=74 Score=28.33 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=43.0
Q ss_pred cCCC-eEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhh
Q 007323 416 LPGE-VIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 416 ~~g~-~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
.||+ .-++- ++.+++|++++|.+.+...+ +|+ .....+++||+|=-. .+.+ ++-++..+|..+.+.+..
T Consensus 42 Gpn~r~d~H~-~~tdE~FyqleG~~~l~v~d-~g~-~~~v~L~eGd~fllP---~gvp--HsP~r~~~tv~LviE~~r 111 (177)
T PRK13264 42 GPNARTDFHY-DPGEEFFYQLEGDMYLKVQE-DGK-RRDVPIREGEMFLLP---PHVP--HSPQREAGSIGLVIERKR 111 (177)
T ss_pred cCCccccccc-CCCceEEEEECCeEEEEEEc-CCc-eeeEEECCCCEEEeC---CCCC--cCCccCCCeEEEEEEeCC
Confidence 4552 33333 45689999999999887754 443 234678999976433 2333 333446778888776654
No 216
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=34.33 E-value=69 Score=28.62 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=20.2
Q ss_pred HHcCchhHHHHHHHHHHHHHHhhCC
Q 007323 318 IVKGSKTEKFRDKMTDLMKYINRNR 342 (608)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~m~~~~ 342 (608)
+....+++.|.++++-+.+||++.+
T Consensus 19 I~~dFde~~F~~rL~Vl~EYlkrtn 43 (183)
T PF08475_consen 19 IYNDFDENEFDNRLQVLTEYLKRTN 43 (183)
T ss_pred hccccchHHHHHHHHHHHHHHHhcC
Confidence 3445677899999999999999843
No 217
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=34.32 E-value=1.6e+02 Score=29.60 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=40.0
Q ss_pred ccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhc
Q 007323 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR 582 (608)
Q Consensus 528 ~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~ 582 (608)
.+.++|..|.--..|+..|+..|+.++++.|++.||--..-..+|. ..|+++..
T Consensus 58 tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~-RC~YgaLn 111 (516)
T KOG0511|consen 58 TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD-RCHYGALN 111 (516)
T ss_pred hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc-hhhhhhhh
Confidence 5667777888888899999999999999999999975443334443 34455443
No 218
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=33.77 E-value=1.1e+02 Score=24.85 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHh-c--------c----c--cHHHHHhhCCHHHHHHHHHHHhHh
Q 007323 342 RLGRDIRDQIIGHLRLQYE-S--------S----Y--TEASVLQDIPISIRAKISQTLYLP 387 (608)
Q Consensus 342 ~l~~~l~~rv~~y~~~~~~-~--------~----~--~~~~~l~~lp~~Lr~~i~~~~~~~ 387 (608)
-||.++|.+|..-....-. + . . -..++|..||+++|.|+.......
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 3899999999654433211 0 0 0 046899999999999998876554
No 219
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=33.59 E-value=43 Score=31.11 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=36.6
Q ss_pred hCCHHHHHHHHHHHhHhhhccccccc-CCCHHHHHHHHHHceeee--ecCCCeEEccCCccC
Q 007323 371 DIPISIRAKISQTLYLPYIEKVPLFK-GCSSEFINQIVIRLHEEF--FLPGEVIMEKGNVVD 429 (608)
Q Consensus 371 ~lp~~Lr~~i~~~~~~~~l~~~~~f~-~l~~~~l~~l~~~~~~~~--~~~g~~i~~~g~~~~ 429 (608)
.+|.+ ..++...+...++.-.-.|. ..++...++......+.. +.+|+.|+++|+..+
T Consensus 147 ~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 147 NLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred CCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 34444 23333333333343333443 456677777778888877 999999999999765
No 220
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=32.76 E-value=1.2e+02 Score=30.82 Aligned_cols=52 Identities=10% Similarity=-0.029 Sum_probs=36.5
Q ss_pred ceeeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 410 LHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||...-. -....++++++++|++++...+.+|+. ....+++||++
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~-~~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNA-RTFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcE-EEEEECCCCEE
Confidence 45667788876533 233367899999999998876666654 33569999954
No 221
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=32.10 E-value=1.5e+02 Score=19.42 Aligned_cols=36 Identities=14% Similarity=0.470 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHh
Q 007323 325 EKFRDKMTDLMKYINRN-RLGRDIRDQIIGHLRLQYE 360 (608)
Q Consensus 325 ~~~~~~~~~~~~~m~~~-~l~~~l~~rv~~y~~~~~~ 360 (608)
.-|.+-++++.+||... .+...++.++.+|++...+
T Consensus 5 ~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~ 41 (45)
T smart00511 5 SGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLN 41 (45)
T ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 46888999999999965 5788999999999876554
No 222
>PRK11677 hypothetical protein; Provisional
Probab=31.93 E-value=3e+02 Score=23.38 Aligned_cols=41 Identities=10% Similarity=0.281 Sum_probs=20.4
Q ss_pred HHHHHHHHHHc-C-chhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 007323 310 LIGNMTALIVK-G-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLR 356 (608)
Q Consensus 310 ~i~~i~~~~~~-~-~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~ 356 (608)
++|.++..+.+ . .+..+-+++++..+.-+.+ -+++|.+||.
T Consensus 15 iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~------YkqeV~~HFa 57 (134)
T PRK11677 15 IIGAVAMRFGNRKLRQQQALQYELEKNKAELEE------YRQELVSHFA 57 (134)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 44444444443 2 2334455556555555543 3466666664
No 223
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=31.59 E-value=6e+02 Score=28.03 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=18.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++.+|+..=+++++.|+|+
T Consensus 481 qEvK~E~Ke~EGdP~iK~r~R~ 502 (609)
T PRK12772 481 QEVKEEYKQDEGDPQIKAKIKQ 502 (609)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888988888885
No 224
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=31.52 E-value=56 Score=22.74 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=19.6
Q ss_pred hCCCCHHHHHHHHHHHHHHHhcc
Q 007323 340 RNRLGRDIRDQIIGHLRLQYESS 362 (608)
Q Consensus 340 ~~~l~~~l~~rv~~y~~~~~~~~ 362 (608)
..++|++|+..|..|.+|.-++.
T Consensus 8 fqkLPDdLKrEvldY~EfLlek~ 30 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEKK 30 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999987653
No 225
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=31.32 E-value=3.9e+02 Score=24.02 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIG 312 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~ 312 (608)
.|.+-+|++++.-+|-.-.|+.+.+..=|-.+..=.+++.++.+.+++
T Consensus 132 ~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 132 DYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477889999999999888999999888888777777777777776654
No 226
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=31.13 E-value=1.8e+02 Score=29.91 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhccccCCc--ccCChhhHHHHHHHHHHHHHH
Q 007323 264 KSYITSMYASVVTMTTVGYGDV--HAVNLREMVFIMIYVSFDMIL 306 (608)
Q Consensus 264 ~~Y~~s~y~~~~t~ttvGygdi--~p~~~~e~~~~~~~~~~g~~~ 306 (608)
.....+.++++++++|.||... .--+...+++.+++|++|..-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 4566888999999999998753 333456677777777777544
No 227
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=30.86 E-value=3.5e+02 Score=27.41 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhccccHHHHHhhCCHHHHHHHHHH
Q 007323 330 KMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 330 ~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~~i~~~ 383 (608)
...++.+++...+.|+-=-++|.++ .|+++...-+-+.+||..+|+++...
T Consensus 13 ~~~~l~~~~~~~g~~~~r~~qi~~~---~~~~~~~~~~~m~~l~~~~r~~l~~~ 63 (355)
T TIGR00048 13 TLQELRQWLKDLGEKPFRAKQIYKW---LYHKGKDSFDDMTNLSKDLREKLNRV 63 (355)
T ss_pred CHHHHHHHHHHcCCCchhHHHHHHH---HHHcCCCCHHHccccCHHHHHHHhhc
Confidence 3456788888888888666666544 56666555555688999999887555
No 228
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.94 E-value=4e+02 Score=26.79 Aligned_cols=48 Identities=6% Similarity=0.007 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHHhccccHHHHHhhCCHHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~~i~~~ 383 (608)
.++.+++...+.|+-=-++|. +..|+++.. -+-+.+||..+|+++...
T Consensus 7 ~~~~~~~~~~g~~~~r~~qi~---~~~~~~~~~-~~~m~~l~~~~r~~l~~~ 54 (336)
T PRK14470 7 QDSRALARPAGISLEDARRIT---GAVIGRGAP-LRSARNVRRSVLDEVDAL 54 (336)
T ss_pred HHHHHHHHHcCCCcHHHHHHH---HHHHhCCCC-HHHhccCCHHHHHHHhcc
Confidence 457778888888885445554 445667666 677889999999988665
No 229
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=29.42 E-value=52 Score=33.58 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=37.5
Q ss_pred CCCeecchhhhcCCCcccEEEEe-ceeeeEEechhhHHHHHHHhh
Q 007323 458 PNSSFGEVSILCNIPQPYTVQVC-ELCRLLRIDKQSFTNIIDIYF 501 (608)
Q Consensus 458 ~G~~fGe~~~~~~~~~~~~~~a~-~~~~l~~l~~~~~~~ll~~~~ 501 (608)
.||-||..++....|+.+++... .+|..+++++.+|..++++-.
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 48999999999999998887665 459999999999999987643
No 230
>PRK06298 type III secretion system protein; Validated
Probab=27.80 E-value=6.6e+02 Score=25.50 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=18.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH
Q 007323 332 TDLMKYINRNRLGRDIRDQIIG 353 (608)
Q Consensus 332 ~~~~~~m~~~~l~~~l~~rv~~ 353 (608)
+++++.+|+..=+++++.|+++
T Consensus 219 qEvKdE~K~~EGdP~iK~rrR~ 240 (356)
T PRK06298 219 FEVKQEFKDTEGNPEIKGRRRQ 240 (356)
T ss_pred HHHHHHHHhccCCHHHHHHHHH
Confidence 6788888888888888888875
No 231
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.68 E-value=4e+02 Score=27.10 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhccccHHHHHhhCCHHHHHHHHHH
Q 007323 330 KMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQT 383 (608)
Q Consensus 330 ~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~~i~~~ 383 (608)
...++.+++...+.|+-=-++|.+ ..|+++...-+-+.+||..+|+.+...
T Consensus 14 ~~~el~~~~~~~g~~~fRa~Qi~~---wiy~~~~~~~~~mtnlpk~lR~~L~~~ 64 (371)
T PRK14461 14 NLAELTELLTAWGQPAFRARQLYR---HLYVNLADSVLAMTDLPLALRERLTAE 64 (371)
T ss_pred CHHHHHHHHHHcCCCchHHHHHHH---HHHHcCCCCHHHccccCHHHHHHHhhc
Confidence 345678888888888865555544 456666666677889999999887655
No 232
>PRK11171 hypothetical protein; Provisional
Probab=27.48 E-value=1.6e+02 Score=28.44 Aligned_cols=49 Identities=18% Similarity=0.071 Sum_probs=36.9
Q ss_pred HceeeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 409 RLHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....++||..+-. ......+.++|++|+..+.. +|++ ..+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~~~---~~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NNDW---VEVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CCEE---EEeCCCCEEE
Confidence 455678999988866 35566689999999998864 5543 6789999653
No 233
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.76 E-value=5e+02 Score=26.52 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhccccHHHHHhhCCHHHHHHHHHHH
Q 007323 331 MTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTL 384 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~~i~~~~ 384 (608)
..++.+++...+.|+---++|.++ .|+++...-+-+.+||..+|+++....
T Consensus 29 ~~el~~~~~~~g~~~~ra~Qi~~w---iy~~~~~~~~~mt~l~k~~r~~L~~~~ 79 (373)
T PRK14459 29 PAERREAVAELGLPAFRAKQLARH---YFGRLTADPAQMTDLPAAAREELAEAL 79 (373)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHH---HHhcCCCCHHHhcccCHHHHHHHHhhc
Confidence 356778888888888666666544 466666666668899999999886663
No 234
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=26.66 E-value=6.3e+02 Score=25.96 Aligned_cols=46 Identities=7% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhccccCCccc------CChhhHHHHHHHHHHHHHHHHHH
Q 007323 265 SYITSMYASVVTMTTVGYGDVHA------VNLREMVFIMIYVSFDMILGAYL 310 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p------~~~~e~~~~~~~~~~g~~~~a~~ 310 (608)
...+|++-++++++|-|+.-... .+..-.++.++.|++|-+-|+..
T Consensus 128 ~~~~Aif~avSa~~taGFs~~~~~~~~~~~~~~i~~v~~~lm~iGg~gF~v~ 179 (390)
T TIGR00933 128 PLFDAIFHSISAFNNGGFSTHSDSSIGYFHDPSVNLVIAFLIILGGLGFTVH 179 (390)
T ss_pred HHHHHHHHHHHHHhcCCcCCCCCcchhhccChHHHHHHHHHHHHHhcCHHHH
Confidence 46699999999999999764432 12223445555666665554433
No 235
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.37 E-value=1.1e+02 Score=18.80 Aligned_cols=24 Identities=13% Similarity=0.408 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCC-----HHHHHHHHHH
Q 007323 331 MTDLMKYINRNRLG-----RDIRDQIIGH 354 (608)
Q Consensus 331 ~~~~~~~m~~~~l~-----~~l~~rv~~y 354 (608)
..+++++++..++| ..|++|+.+|
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 35678888888887 4577887776
No 236
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=26.17 E-value=3.5e+02 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHHhccccHHHHHhhCC
Q 007323 344 GRDIRDQIIGHLRLQYESSYTEASVLQDIP 373 (608)
Q Consensus 344 ~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp 373 (608)
|--+-++=+.|+.....+...|.+++++.|
T Consensus 72 PlLqAE~DR~~lr~~~~~~~~E~~lMkdVp 101 (130)
T PF06212_consen 72 PLLQAEEDRRYLRRLKANREEEAELMKDVP 101 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333333444444444444445777888876
No 237
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=25.63 E-value=2.2e+02 Score=26.17 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=28.4
Q ss_pred ccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323 423 EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 423 ~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
+++....++|++++|+..+...+.+|+ ..+...++||.
T Consensus 98 Hp~ade~E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~ 135 (209)
T COG2140 98 HPNADEPEIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDV 135 (209)
T ss_pred CCCCCcccEEEEEeccEEEEEEcCCCc-EEEEEecCCcE
Confidence 344444469999999999988888876 46667788875
No 238
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=23.37 E-value=2.2e+02 Score=18.46 Aligned_cols=35 Identities=9% Similarity=0.406 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHH
Q 007323 324 TEKFRDKMTDLMKYINRNR-LGRDIRDQIIGHLRLQ 358 (608)
Q Consensus 324 ~~~~~~~~~~~~~~m~~~~-l~~~l~~rv~~y~~~~ 358 (608)
+.-|.+-++++.+||.... +++.++.|+.+|++..
T Consensus 4 ~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~ 39 (43)
T PF07527_consen 4 RAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSC 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 3458888999999987644 6679999999988754
No 239
>PF14937 DUF4500: Domain of unknown function (DUF4500)
Probab=23.18 E-value=1.2e+02 Score=23.16 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 007323 298 IYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 298 ~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.+|.+|++..+.++|.++-+-.+
T Consensus 38 ~iM~~Gl~a~~~c~gYi~Ym~~~ 60 (86)
T PF14937_consen 38 PIMAFGLIAITLCVGYIAYMHAT 60 (86)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888776443
No 240
>PRK11171 hypothetical protein; Provisional
Probab=23.18 E-value=2.9e+02 Score=26.69 Aligned_cols=47 Identities=15% Similarity=0.035 Sum_probs=31.3
Q ss_pred eeeeecCCCeEEccCC--ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~--~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||...-.... ..+++++|++|.+.+.. +|++ ..+.+||.+=
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~~---~~L~~GDsi~ 112 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGKT---HALSEGGYAY 112 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCEE---EEECCCCEEE
Confidence 4456777765433322 23589999999999875 4543 6788998653
No 241
>PHA02909 hypothetical protein; Provisional
Probab=22.94 E-value=79 Score=21.60 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=14.2
Q ss_pred hhccccCCcccCChhhHHHHHHH
Q 007323 277 MTTVGYGDVHAVNLREMVFIMIY 299 (608)
Q Consensus 277 ~ttvGygdi~p~~~~e~~~~~~~ 299 (608)
|.+|.||+-.-.-..|..|++++
T Consensus 14 mlsvdygngkkvyytentfcimv 36 (72)
T PHA02909 14 MLSVDYGNGKKVYYTENTFCIMV 36 (72)
T ss_pred EEEEecCCCeEEEEeccchhHHH
Confidence 56778887655555555555543
No 242
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.81 E-value=5e+02 Score=26.21 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=35.8
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHHHhccccHHHHHhhCCHHHHHHHHH
Q 007323 331 MTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQ 382 (608)
Q Consensus 331 ~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~~i~~ 382 (608)
+.++.+++...+.|+---++|.++ .|+++...-+-+.+||..+|+++..
T Consensus 9 ~~~l~~~~~~~g~~~~r~~qi~~w---~~~~~~~~~~~m~~l~~~~r~~l~~ 57 (345)
T PRK14457 9 LAELEDWAVAQGQPAFRGRQLHDW---LYNKGVRSLDEISVLPKAWRESLKD 57 (345)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHH---HHhcCCCCHHHcCccCHHHHHHHhh
Confidence 456778888888888666666544 4566666666788999999988865
No 243
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=22.01 E-value=1.7e+02 Score=22.55 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=38.9
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEE
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 487 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~ 487 (608)
.....+.||..+-...-......+|++|.... .+| .+.+|+++=.. .-...+..+.+.|.++.
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~~------~~~~G~~~~~p-----~g~~h~~~s~~gc~~~v 88 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GDG------RYGAGDWLRLP-----PGSSHTPRSDEGCLILV 88 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TTC------EEETTEEEEE------TTEEEEEEESSCEEEEE
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CCc------cCCCCeEEEeC-----CCCccccCcCCCEEEEE
Confidence 44567888888776555666777899999862 222 34777764322 22345667777888765
No 244
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=22.00 E-value=5.7e+02 Score=28.94 Aligned_cols=62 Identities=6% Similarity=0.067 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCC
Q 007323 207 SRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGD 284 (608)
Q Consensus 207 ~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygd 284 (608)
.-+..++....+++|+++++....-..... +|.+.-...-....+.|+|-++++....|+.-
T Consensus 449 k~L~~Iv~~Y~~~~~llG~i~l~~wi~~~~----------------~~~~~l~~~gin~~W~aiFhAVSAFnNAGFsL 510 (800)
T TIGR00934 449 KCLCSIVLVYFLGFNILGFVLLLPWINHVK----------------TYSEVVRSKGVSPTWWGFFTAMSAFANLGLTL 510 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------cHHHHHhhcCccHHHHHHHHHHHHHhcCCCCc
Confidence 345566667778889988886543211100 00111111122345678888999999988654
No 245
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=20.36 E-value=2.6e+02 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=27.6
Q ss_pred eecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 414 FFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 414 ~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+.||...-.. -....++.+|++|++.+.. +|+. ..+.+||.+=
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~---~~~~---~~l~~Gd~~~ 157 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTI---NGQD---YHLVAGQSYA 157 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEE---CCEE---EEecCCCEEE
Confidence 45565532111 1234689999999999865 4433 5789998653
No 246
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=20.17 E-value=3.2e+02 Score=22.51 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=22.2
Q ss_pred CeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 429 ~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
++++-+++|.+.+.. ++|+ ...+++||.|=
T Consensus 64 ~E~chil~G~v~~T~--d~Ge---~v~~~aGD~~~ 93 (116)
T COG3450 64 DEFCHILEGRVEVTP--DGGE---PVEVRAGDSFV 93 (116)
T ss_pred ceEEEEEeeEEEEEC--CCCe---EEEEcCCCEEE
Confidence 688899999998764 3443 35688998653
No 247
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.12 E-value=1.7e+02 Score=25.44 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=28.6
Q ss_pred CeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 429 ~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
+++.+|++|++.+.. +|+. ...++||++= + ..-...+..+-..+..+.+
T Consensus 96 DEi~~VlEG~L~i~~---~G~~---~~A~~GDvi~----i-PkGs~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 96 DEIKYVLEGTLEISI---DGQT---VTAKPGDVIF----I-PKGSTITFSTPDYARFFYV 144 (152)
T ss_dssp EEEEEEEEEEEEEEE---TTEE---EEEETT-EEE----E--TT-EEEEEEEEEEEEEEE
T ss_pred ceEEEEEEeEEEEEE---CCEE---EEEcCCcEEE----E-CCCCEEEEecCCCEEEEEE
Confidence 678999999998864 5654 5567888642 1 2223344444455555544
Done!