Query 007323
Match_columns 608
No_of_seqs 513 out of 4021
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 22:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 5.1E-41 1.7E-45 340.5 9.0 339 66-514 3-348 (355)
2 2ptm_A Hyperpolarization-activ 100.0 7.6E-31 2.6E-35 243.3 23.5 190 321-514 4-194 (198)
3 3ukn_A Novel protein similar t 100.0 3.3E-31 1.1E-35 248.6 17.3 193 316-514 2-199 (212)
4 3bpz_A Potassium/sodium hyperp 100.0 3.7E-30 1.3E-34 239.4 22.0 188 321-513 5-193 (202)
5 1orq_C Potassium channel; volt 100.0 8.4E-28 2.9E-32 226.2 15.5 207 75-320 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.9 2.4E-26 8.1E-31 240.5 12.0 229 54-320 161-430 (514)
7 4f8a_A Potassium voltage-gated 99.8 1.4E-20 4.8E-25 167.7 14.2 144 365-513 5-150 (160)
8 2a9h_A Voltage-gated potassium 99.8 6E-20 2.1E-24 158.7 11.7 126 151-321 15-140 (155)
9 3mdp_A Cyclic nucleotide-bindi 99.8 5.1E-19 1.7E-23 154.0 13.0 128 386-513 5-135 (142)
10 2pqq_A Putative transcriptiona 99.8 3.5E-18 1.2E-22 150.0 15.4 128 386-513 4-131 (149)
11 3idb_B CAMP-dependent protein 99.8 8.6E-19 2.9E-23 156.1 11.6 129 380-509 31-159 (161)
12 3gyd_A CNMP-BD protein, cyclic 99.8 3.5E-18 1.2E-22 156.1 15.6 136 378-513 30-165 (187)
13 3ocp_A PRKG1 protein; serine/t 99.8 1.4E-18 4.7E-23 150.6 10.9 131 371-506 7-137 (139)
14 2z69_A DNR protein; beta barre 99.8 6.1E-18 2.1E-22 149.4 14.2 128 386-513 11-139 (154)
15 3dn7_A Cyclic nucleotide bindi 99.7 2.6E-17 8.9E-22 151.4 13.9 128 386-513 6-134 (194)
16 4ev0_A Transcription regulator 99.7 3.3E-17 1.1E-21 153.6 14.6 125 389-513 1-125 (216)
17 2ih3_C Voltage-gated potassium 99.7 1.2E-17 4.2E-22 138.9 10.0 56 265-320 61-116 (122)
18 3fx3_A Cyclic nucleotide-bindi 99.7 2.7E-17 9.4E-22 156.5 13.3 131 383-513 7-137 (237)
19 3e97_A Transcriptional regulat 99.7 3.5E-17 1.2E-21 155.1 13.1 128 386-513 5-132 (231)
20 4h33_A LMO2059 protein; bilaye 99.7 2.3E-17 7.7E-22 140.2 10.1 92 265-356 43-135 (137)
21 1vp6_A CNBD, cyclic-nucleotide 99.7 8.6E-17 2.9E-21 139.1 13.3 123 385-514 9-131 (138)
22 3dv8_A Transcriptional regulat 99.7 1E-16 3.5E-21 150.7 14.8 127 387-513 3-131 (220)
23 3d0s_A Transcriptional regulat 99.7 2.9E-17 9.9E-22 155.3 10.8 128 386-513 5-132 (227)
24 1zyb_A Transcription regulator 99.7 1.1E-16 3.7E-21 151.8 14.3 129 385-513 16-147 (232)
25 1wgp_A Probable cyclic nucleot 99.7 3.2E-17 1.1E-21 141.6 9.5 119 386-505 5-134 (137)
26 3dkw_A DNR protein; CRP-FNR, H 99.7 5.1E-17 1.8E-21 153.6 10.0 128 386-513 8-136 (227)
27 3pna_A CAMP-dependent protein 99.7 2.6E-16 9E-21 138.8 13.7 118 384-506 35-152 (154)
28 3iwz_A CAP-like, catabolite ac 99.7 2.8E-16 9.7E-21 148.7 14.4 128 386-513 10-143 (230)
29 3rvy_A ION transport protein; 99.7 7.8E-18 2.7E-22 164.3 3.4 201 75-320 31-241 (285)
30 2gau_A Transcriptional regulat 99.7 1.8E-16 6.3E-21 150.3 12.7 124 390-513 13-136 (232)
31 3vou_A ION transport 2 domain 99.7 5.3E-16 1.8E-20 134.3 14.4 112 209-350 26-148 (148)
32 4ava_A Lysine acetyltransferas 99.7 3.9E-16 1.3E-20 156.6 15.1 127 386-514 12-138 (333)
33 3shr_A CGMP-dependent protein 99.7 5.2E-16 1.8E-20 153.2 14.1 142 368-514 20-161 (299)
34 3shr_A CGMP-dependent protein 99.6 3.7E-16 1.3E-20 154.3 11.4 131 384-514 154-285 (299)
35 3ryp_A Catabolite gene activat 99.6 1.2E-15 4E-20 142.3 13.8 121 393-513 2-123 (210)
36 2d93_A RAP guanine nucleotide 99.6 7.7E-17 2.6E-21 138.5 4.3 121 377-502 6-128 (134)
37 3eff_K Voltage-gated potassium 99.6 8E-16 2.7E-20 131.8 10.2 89 208-320 7-95 (139)
38 2oz6_A Virulence factor regula 99.6 3E-15 1E-19 139.1 14.1 116 398-513 1-120 (207)
39 2qcs_B CAMP-dependent protein 99.6 6.9E-15 2.4E-19 144.5 15.5 128 385-512 155-283 (291)
40 3tnp_B CAMP-dependent protein 99.6 1.5E-15 5.2E-20 156.2 11.0 127 381-508 139-265 (416)
41 1o5l_A Transcriptional regulat 99.6 1.8E-15 6.1E-20 141.3 10.4 122 392-513 4-126 (213)
42 3kcc_A Catabolite gene activat 99.6 8E-15 2.7E-19 141.3 13.5 118 396-513 55-173 (260)
43 1o7f_A CAMP-dependent RAP1 gua 99.6 3.1E-15 1.1E-19 157.5 11.5 141 372-513 27-169 (469)
44 2fmy_A COOA, carbon monoxide o 99.6 2.3E-15 7.9E-20 141.4 9.3 120 386-513 3-122 (220)
45 2qcs_B CAMP-dependent protein 99.6 1.3E-14 4.5E-19 142.5 14.8 127 383-514 35-161 (291)
46 3of1_A CAMP-dependent protein 99.6 5.9E-15 2E-19 141.2 11.6 124 385-513 5-128 (246)
47 1ft9_A Carbon monoxide oxidati 99.6 3.7E-15 1.3E-19 140.2 8.6 118 388-513 1-118 (222)
48 3tnp_B CAMP-dependent protein 99.6 9.2E-15 3.1E-19 150.4 11.1 130 384-513 264-399 (416)
49 3of1_A CAMP-dependent protein 99.6 1.7E-14 5.9E-19 137.9 12.3 116 385-504 123-238 (246)
50 4din_B CAMP-dependent protein 99.6 1.1E-14 3.8E-19 148.2 11.4 128 384-511 245-373 (381)
51 3e6c_C CPRK, cyclic nucleotide 99.6 1.4E-14 4.8E-19 138.9 11.4 124 387-513 9-132 (250)
52 4din_B CAMP-dependent protein 99.5 1.9E-14 6.5E-19 146.5 12.5 127 383-514 126-252 (381)
53 2bgc_A PRFA; bacterial infecti 99.5 1.8E-13 6.1E-18 130.1 13.4 117 396-513 2-123 (238)
54 2k1e_A Water soluble analogue 99.5 3.6E-15 1.2E-19 120.1 1.2 89 208-320 7-95 (103)
55 2q67_A Potassium channel prote 99.5 3.1E-13 1.1E-17 110.5 12.8 55 266-320 50-104 (114)
56 3la7_A Global nitrogen regulat 99.5 1.5E-13 5.3E-18 130.9 12.4 114 400-513 30-148 (243)
57 1o7f_A CAMP-dependent RAP1 gua 99.5 1.7E-13 5.9E-18 144.2 13.6 125 382-510 332-458 (469)
58 4f7z_A RAP guanine nucleotide 99.4 3.5E-13 1.2E-17 154.6 13.6 129 377-506 32-162 (999)
59 3ldc_A Calcium-gated potassium 99.4 6.8E-13 2.3E-17 101.4 10.7 53 266-318 29-81 (82)
60 3ouf_A Potassium channel prote 99.4 6.3E-13 2.1E-17 105.2 10.4 54 266-319 33-86 (97)
61 3cf6_E RAP guanine nucleotide 99.4 5.2E-13 1.8E-17 145.0 11.3 130 374-507 19-150 (694)
62 3b02_A Transcriptional regulat 99.4 2.1E-12 7.1E-17 118.5 10.4 94 413-513 2-95 (195)
63 1n0q_A 3ANK, 3 ankyrin repeats 99.3 7.7E-12 2.6E-16 99.4 7.6 70 539-608 2-71 (93)
64 4gpm_A Engineered protein OR26 99.3 7.9E-12 2.7E-16 111.4 7.8 78 531-608 62-139 (169)
65 4f7z_A RAP guanine nucleotide 99.3 2.9E-11 1E-15 138.7 14.4 114 383-500 333-448 (999)
66 2zcw_A TTHA1359, transcription 99.2 1.1E-11 3.8E-16 114.3 8.6 99 407-513 2-102 (202)
67 1xl4_A Inward rectifier potass 99.2 2.3E-11 7.9E-16 117.2 9.7 56 265-320 82-137 (301)
68 3pjs_K KCSA, voltage-gated pot 99.2 1.2E-12 4E-17 115.4 -1.7 56 265-320 67-122 (166)
69 2qks_A KIR3.1-prokaryotic KIR 99.2 1.1E-10 3.7E-15 113.4 11.8 56 265-320 78-133 (321)
70 4gpm_A Engineered protein OR26 99.2 7.8E-11 2.7E-15 104.9 9.8 79 530-608 28-106 (169)
71 3aaa_C Myotrophin, protein V-1 99.2 3.5E-11 1.2E-15 101.1 7.2 77 532-608 33-109 (123)
72 4dxw_A Navrh, ION transport pr 99.2 9.7E-11 3.3E-15 110.0 10.6 204 75-320 13-225 (229)
73 2zgd_A 3 repeat synthetic anky 99.1 8.4E-11 2.9E-15 96.6 8.1 77 532-608 17-93 (110)
74 1p7b_A Integral membrane chann 99.1 9.5E-11 3.2E-15 114.0 8.5 57 265-321 96-152 (333)
75 4b93_B Ankyrin repeat domain-c 99.1 7.2E-11 2.5E-15 114.0 6.9 78 531-608 144-221 (269)
76 3um7_A Potassium channel subfa 99.1 3.4E-10 1.1E-14 108.4 10.1 56 265-320 115-170 (309)
77 3c5r_A BARD-1, BRCA1-associate 99.1 1.7E-10 5.9E-15 98.9 7.3 77 532-608 36-112 (137)
78 2jab_A H10-2-G3; HER2, darpin, 99.1 2E-10 6.7E-15 98.4 7.3 78 531-608 39-116 (136)
79 3deo_A Signal recognition part 99.1 3.3E-10 1.1E-14 102.5 9.2 79 530-608 67-146 (183)
80 3sya_A G protein-activated inw 99.0 1.1E-09 3.6E-14 106.2 12.4 98 210-320 47-148 (340)
81 3aaa_C Myotrophin, protein V-1 99.0 3.8E-10 1.3E-14 94.7 8.1 72 537-608 5-76 (123)
82 1dcq_A PYK2-associated protein 99.0 3.6E-10 1.2E-14 109.6 8.8 77 532-608 162-241 (278)
83 3ui2_A Signal recognition part 99.0 6.4E-10 2.2E-14 105.7 9.9 79 530-608 68-147 (244)
84 3twr_A Tankyrase-2; ankyrin re 99.0 5.4E-10 1.8E-14 99.2 8.5 77 532-608 68-144 (165)
85 1d9s_A Cyclin-dependent kinase 99.0 1.9E-10 6.6E-15 98.5 5.3 76 532-608 38-114 (136)
86 1awc_B Protein (GA binding pro 99.0 4.4E-10 1.5E-14 98.4 7.3 77 532-608 60-136 (153)
87 3t8k_A Uncharacterized protein 99.0 4.8E-10 1.6E-14 101.5 7.3 70 537-606 36-115 (186)
88 2l6b_A NR1C; ankyrin, consensu 99.0 3.2E-10 1.1E-14 93.9 5.6 79 530-608 33-111 (115)
89 2jab_A H10-2-G3; HER2, darpin, 99.0 9.7E-10 3.3E-14 94.0 8.2 73 536-608 11-83 (136)
90 2l6b_A NR1C; ankyrin, consensu 99.0 2E-10 6.9E-15 95.1 3.8 74 535-608 5-78 (115)
91 3f6q_A Integrin-linked protein 99.0 9.1E-10 3.1E-14 99.2 8.0 78 531-608 64-141 (179)
92 3twr_A Tankyrase-2; ankyrin re 99.0 1.3E-09 4.6E-14 96.6 8.9 78 531-608 34-111 (165)
93 3f6q_A Integrin-linked protein 99.0 1.1E-09 3.9E-14 98.6 8.4 78 531-608 31-108 (179)
94 1bd8_A P19INK4D CDK4/6 inhibit 99.0 1.4E-09 4.9E-14 95.4 8.7 77 531-608 60-136 (156)
95 1d9s_A Cyclin-dependent kinase 99.0 4.3E-10 1.5E-14 96.2 5.0 76 532-608 5-81 (136)
96 3c5r_A BARD-1, BRCA1-associate 99.0 7.5E-10 2.6E-14 94.8 6.4 74 535-608 6-79 (137)
97 1bi7_B P16INK4A, MTS1, multipl 98.9 5.6E-10 1.9E-14 98.1 5.4 78 531-608 69-147 (156)
98 1ycs_B 53BP2, P53BP2; ankyrin 98.9 1.5E-09 5.2E-14 102.8 8.5 77 531-607 62-139 (239)
99 1n0q_A 3ANK, 3 ankyrin repeats 98.9 1.6E-09 5.5E-14 85.8 7.1 67 531-597 27-93 (93)
100 1bi7_B P16INK4A, MTS1, multipl 98.9 6.5E-10 2.2E-14 97.7 4.8 77 531-608 37-114 (156)
101 3v30_A DNA-binding protein rfx 98.9 1.5E-09 5.2E-14 97.0 7.3 77 532-608 62-138 (172)
102 1awc_B Protein (GA binding pro 98.9 2.1E-09 7.4E-14 93.9 8.1 73 536-608 31-103 (153)
103 3um7_A Potassium channel subfa 98.9 2.2E-09 7.7E-14 102.7 8.8 55 266-320 225-285 (309)
104 2vge_A RELA-associated inhibit 98.9 2E-09 7E-14 101.1 8.4 78 531-608 46-124 (229)
105 1n0r_A 4ANK, 4 ankyrin repeats 98.9 2.1E-09 7.2E-14 90.2 7.6 77 532-608 28-104 (126)
106 2y1l_E Darpin-8.4; hydrolase-i 98.9 2E-09 6.7E-14 96.0 7.8 77 532-608 73-149 (169)
107 2y1l_E Darpin-8.4; hydrolase-i 98.9 3.7E-09 1.3E-13 94.2 9.4 78 531-608 39-116 (169)
108 3ehr_A Osteoclast-stimulating 98.9 1.2E-09 4.2E-14 102.1 6.4 78 531-608 98-176 (222)
109 3v31_A Ankyrin repeat family A 98.9 2E-09 6.7E-14 95.7 7.4 77 532-608 62-138 (167)
110 1bd8_A P19INK4D CDK4/6 inhibit 98.9 2E-09 6.9E-14 94.4 7.1 77 531-608 28-104 (156)
111 3spc_A Inward-rectifier K+ cha 98.9 4.4E-09 1.5E-13 102.1 10.0 98 210-320 49-151 (343)
112 3v30_A DNA-binding protein rfx 98.9 3E-09 1E-13 95.0 8.3 77 532-608 29-105 (172)
113 2rfm_A Putative ankyrin repeat 98.9 2E-09 6.8E-14 98.1 7.0 77 532-608 94-170 (192)
114 4gx0_A TRKA domain protein; me 98.9 5.5E-09 1.9E-13 112.1 11.5 85 207-317 18-104 (565)
115 4hbd_A KN motif and ankyrin re 98.9 2E-09 6.8E-14 104.4 7.4 75 534-608 178-253 (276)
116 3v31_A Ankyrin repeat family A 98.9 3.9E-09 1.3E-13 93.8 8.4 77 532-608 29-105 (167)
117 1ihb_A P18-INK4C(INK6), cyclin 98.9 2.8E-09 9.4E-14 94.1 7.3 77 532-608 63-140 (162)
118 1oy3_D Transcription factor in 98.9 2.3E-09 8E-14 104.1 7.5 71 538-608 191-261 (282)
119 3jue_A Arfgap with coiled-coil 98.9 5E-09 1.7E-13 105.3 9.8 72 537-608 233-304 (368)
120 2vge_A RELA-associated inhibit 98.9 4E-09 1.4E-13 99.1 8.2 75 534-608 16-90 (229)
121 1ihb_A P18-INK4C(INK6), cyclin 98.9 2.7E-09 9.2E-14 94.2 6.4 77 531-608 30-106 (162)
122 1yyh_A HN1;, notch 1, ankyrin 98.8 3.3E-09 1.1E-13 101.4 7.4 77 532-608 150-226 (253)
123 2rfm_A Putative ankyrin repeat 98.8 3.6E-09 1.2E-13 96.4 7.2 78 531-608 60-137 (192)
124 1ikn_D Protein (I-kappa-B-alph 98.8 4.1E-09 1.4E-13 99.6 7.8 76 533-608 111-187 (236)
125 3t8k_A Uncharacterized protein 98.8 1.1E-09 3.9E-14 99.1 3.6 80 529-608 65-157 (186)
126 2b0o_E UPLC1; arfgap, structur 98.8 3E-09 1E-13 104.3 6.8 74 535-608 186-262 (301)
127 3deo_A Signal recognition part 98.8 4.8E-09 1.6E-13 94.8 7.6 72 536-608 41-113 (183)
128 1s70_B 130 kDa myosin-binding 98.8 4.5E-09 1.5E-13 103.2 7.9 74 535-608 195-268 (299)
129 2etb_A Transient receptor pote 98.8 5.9E-09 2E-13 99.8 8.5 74 535-608 86-175 (256)
130 3ukm_A Potassium channel subfa 98.8 5.5E-09 1.9E-13 98.3 7.9 55 265-319 93-147 (280)
131 3ukm_A Potassium channel subfa 98.8 8.2E-09 2.8E-13 97.2 9.1 54 266-319 202-262 (280)
132 1k1a_A B-cell lymphoma 3-encod 98.8 5.1E-09 1.7E-13 99.1 7.9 72 537-608 148-219 (241)
133 1oy3_D Transcription factor in 98.8 5.2E-09 1.8E-13 101.6 8.0 78 531-608 150-228 (282)
134 3jxi_A Vanilloid receptor-rela 98.8 4.6E-09 1.6E-13 100.8 7.5 77 532-608 86-179 (260)
135 3lvq_E ARF-GAP with SH3 domain 98.8 3.5E-09 1.2E-13 111.8 7.2 73 536-608 168-243 (497)
136 2dzn_A Probable 26S proteasome 98.8 4.9E-09 1.7E-13 98.3 7.4 78 531-608 132-211 (228)
137 3aji_A 26S proteasome non-ATPa 98.8 5.8E-09 2E-13 98.1 7.6 76 533-608 133-208 (231)
138 3utm_A Tankyrase-1; tankyrase, 98.8 5.5E-09 1.9E-13 104.9 7.8 77 532-608 240-316 (351)
139 1ycs_B 53BP2, P53BP2; ankyrin 98.8 4.5E-09 1.5E-13 99.5 6.5 72 537-608 35-106 (239)
140 2xai_A ASB-9, ankyrin repeat a 98.8 6.8E-09 2.3E-13 99.7 7.5 76 532-608 127-202 (261)
141 4g8k_A 2-5A-dependent ribonucl 98.8 1.1E-08 3.9E-13 102.2 9.3 73 535-607 21-94 (337)
142 2f8y_A Notch homolog 1, transl 98.8 8.4E-09 2.9E-13 96.3 7.7 77 532-608 118-194 (223)
143 2rfa_A Transient receptor pote 98.8 9.4E-09 3.2E-13 96.7 7.9 76 533-608 69-157 (232)
144 3b7b_A Euchromatic histone-lys 98.8 7.2E-09 2.5E-13 97.8 7.2 77 532-608 137-213 (237)
145 2dzn_A Probable 26S proteasome 98.8 1.2E-08 3.9E-13 95.7 8.5 78 531-608 99-177 (228)
146 1n0r_A 4ANK, 4 ankyrin repeats 98.8 8.2E-09 2.8E-13 86.6 6.8 70 539-608 2-71 (126)
147 2kyh_A KVAP, voltage-gated pot 98.8 1.1E-08 3.8E-13 87.1 7.5 100 76-193 23-124 (147)
148 1ors_C Potassium channel; volt 98.8 3.3E-09 1.1E-13 89.2 4.1 109 75-198 7-117 (132)
149 2pnn_A Transient receptor pote 98.8 1E-08 3.4E-13 99.2 7.9 75 534-608 96-187 (273)
150 3ehr_A Osteoclast-stimulating 98.8 5.2E-09 1.8E-13 97.8 5.5 72 537-608 71-143 (222)
151 1s70_B 130 kDa myosin-binding 98.8 9E-09 3.1E-13 100.9 7.5 77 532-608 66-142 (299)
152 4b93_B Ankyrin repeat domain-c 98.8 5.9E-09 2E-13 100.5 6.1 77 532-608 112-188 (269)
153 3ui2_A Signal recognition part 98.8 8.6E-09 2.9E-13 97.9 6.9 72 536-608 42-114 (244)
154 3utm_A Tankyrase-1; tankyrase, 98.7 1.5E-08 5E-13 101.8 8.7 81 528-608 47-127 (351)
155 2xai_A ASB-9, ankyrin repeat a 98.7 1.1E-08 3.9E-13 98.1 7.3 77 530-607 27-103 (261)
156 3hra_A Ankyrin repeat family p 98.7 1.6E-08 5.4E-13 92.8 7.9 77 532-608 99-181 (201)
157 1n11_A Ankyrin; clathrin, BAND 98.7 1.1E-08 3.9E-13 106.2 6.7 77 532-608 304-380 (437)
158 3d9h_A CDNA FLJ77766, highly s 98.7 2.1E-08 7E-13 97.7 8.0 76 532-608 183-258 (285)
159 3d9h_A CDNA FLJ77766, highly s 98.7 1.4E-08 4.9E-13 98.9 6.6 71 537-607 57-127 (285)
160 3ljn_A Hypothetical protein; a 98.7 1.4E-08 4.8E-13 102.7 6.8 77 532-608 166-247 (364)
161 2f8y_A Notch homolog 1, transl 98.7 2.7E-08 9.2E-13 92.9 8.1 77 532-608 85-161 (223)
162 3aji_A 26S proteasome non-ATPa 98.7 2.5E-08 8.5E-13 93.7 7.9 78 531-608 65-142 (231)
163 1yyh_A HN1;, notch 1, ankyrin 98.7 1.1E-08 3.8E-13 97.7 5.6 77 532-608 117-193 (253)
164 3hra_A Ankyrin repeat family p 98.7 4.7E-08 1.6E-12 89.6 9.1 73 535-607 68-142 (201)
165 3b7b_A Euchromatic histone-lys 98.7 2.5E-08 8.6E-13 94.1 7.3 78 531-608 36-114 (237)
166 1sw6_A Regulatory protein SWI6 98.7 1.8E-08 6.2E-13 100.2 6.0 77 532-608 194-319 (327)
167 2rfa_A Transient receptor pote 98.6 3.2E-08 1.1E-12 93.0 6.8 74 535-608 117-200 (232)
168 3kea_A K1L; tropism, ANK repea 98.6 1.9E-08 6.5E-13 97.9 5.3 70 539-608 62-132 (285)
169 1k1a_A B-cell lymphoma 3-encod 98.6 4.6E-08 1.6E-12 92.4 7.6 80 529-608 36-119 (241)
170 2fo1_E LIN-12 protein; beta-ba 98.6 2.9E-08 1E-12 100.7 6.5 74 535-608 275-349 (373)
171 2etb_A Transient receptor pote 98.6 1.5E-08 5.3E-13 96.9 4.1 70 539-608 136-224 (256)
172 3kea_A K1L; tropism, ANK repea 98.6 3.2E-08 1.1E-12 96.3 6.2 66 533-598 89-155 (285)
173 1n11_A Ankyrin; clathrin, BAND 98.6 4.3E-08 1.5E-12 101.8 7.0 78 531-608 39-116 (437)
174 4g8k_A 2-5A-dependent ribonucl 98.6 1.1E-07 3.9E-12 94.9 9.5 63 533-600 267-329 (337)
175 3jxi_A Vanilloid receptor-rela 98.6 3E-08 1E-12 95.0 5.0 72 537-608 138-228 (260)
176 1wdy_A 2-5A-dependent ribonucl 98.6 1.4E-07 4.7E-12 91.4 9.3 73 536-608 36-108 (285)
177 4hbd_A KN motif and ankyrin re 98.6 4.9E-08 1.7E-12 94.5 5.6 77 532-608 138-219 (276)
178 1wdy_A 2-5A-dependent ribonucl 98.5 1.4E-07 4.8E-12 91.4 8.3 73 530-602 210-283 (285)
179 2pnn_A Transient receptor pote 98.5 4.1E-08 1.4E-12 94.8 4.2 71 538-608 147-236 (273)
180 3ljn_A Hypothetical protein; a 98.5 1E-07 3.5E-12 96.3 7.0 75 534-608 133-214 (364)
181 1ikn_D Protein (I-kappa-B-alph 98.5 8.3E-08 2.8E-12 90.5 5.7 77 532-608 143-222 (236)
182 1lnq_A MTHK channels, potassiu 98.5 7E-09 2.4E-13 103.5 -2.1 54 267-320 47-100 (336)
183 3lvq_E ARF-GAP with SH3 domain 98.5 9.9E-08 3.4E-12 100.7 6.4 74 531-604 199-272 (497)
184 3jue_A Arfgap with coiled-coil 98.5 1.9E-07 6.6E-12 93.7 8.1 71 538-608 198-271 (368)
185 1sw6_A Regulatory protein SWI6 98.5 4.8E-08 1.6E-12 97.1 3.5 79 530-608 121-204 (327)
186 1dcq_A PYK2-associated protein 98.4 5.7E-07 1.9E-11 86.9 9.2 75 534-608 125-208 (278)
187 3eu9_A Huntingtin-interacting 98.4 4.1E-07 1.4E-11 85.5 7.8 70 539-608 76-145 (240)
188 2fo1_E LIN-12 protein; beta-ba 98.4 1.8E-07 6.3E-12 94.8 5.5 78 531-608 158-238 (373)
189 2b0o_E UPLC1; arfgap, structur 98.3 2.8E-07 9.5E-12 90.2 5.0 67 532-598 219-285 (301)
190 3eu9_A Huntingtin-interacting 98.3 6.4E-07 2.2E-11 84.2 7.2 77 532-608 35-112 (240)
191 2zgd_A 3 repeat synthetic anky 98.3 7.7E-07 2.6E-11 72.6 6.7 61 531-591 49-109 (110)
192 2aja_A Ankyrin repeat family p 98.0 9.8E-07 3.3E-11 88.9 0.6 70 537-607 126-200 (376)
193 2aja_A Ankyrin repeat family p 97.5 1.2E-05 4.1E-10 80.9 -0.6 57 540-596 164-223 (376)
194 3kg2_A Glutamate receptor 2; I 87.4 0.72 2.5E-05 51.3 6.7 56 264-320 562-617 (823)
195 2ozj_A Cupin 2, conserved barr 75.3 15 0.00052 28.6 8.7 65 413-488 43-107 (114)
196 3fjs_A Uncharacterized protein 74.0 16 0.00053 28.8 8.3 66 410-486 38-103 (114)
197 3rns_A Cupin 2 conserved barre 73.4 13 0.00044 33.7 8.6 70 410-490 39-108 (227)
198 3lwc_A Uncharacterized protein 66.5 14 0.00049 29.4 6.5 65 412-488 44-109 (119)
199 1yhf_A Hypothetical protein SP 62.7 36 0.0012 26.3 8.3 67 411-488 43-109 (115)
200 2pfw_A Cupin 2, conserved barr 61.0 37 0.0013 26.3 8.1 68 410-488 36-103 (116)
201 2r9r_B Paddle chimera voltage 59.0 5.3 0.00018 41.3 3.2 15 368-382 472-486 (514)
202 3rvy_A ION transport protein; 58.1 11 0.00038 35.4 5.2 8 310-317 235-242 (285)
203 1dgw_A Canavalin; duplicated s 57.0 12 0.0004 32.4 4.7 52 410-463 43-94 (178)
204 1o5u_A Novel thermotoga mariti 51.6 29 0.00099 26.6 5.7 46 411-463 34-79 (101)
205 3c3v_A Arachin ARAH3 isoform; 51.3 23 0.00078 36.3 6.3 60 403-462 367-427 (510)
206 3fz3_A Prunin; TREE NUT allerg 50.9 27 0.00093 35.7 6.7 61 403-463 389-450 (531)
207 2i45_A Hypothetical protein; n 50.7 27 0.00093 26.7 5.5 68 415-493 35-103 (107)
208 3es4_A Uncharacterized protein 50.3 21 0.00073 28.2 4.7 46 414-465 48-93 (116)
209 2gu9_A Tetracenomycin polyketi 50.0 32 0.0011 26.3 6.0 48 410-463 23-73 (113)
210 4e2g_A Cupin 2 conserved barre 49.7 32 0.0011 27.2 6.0 77 410-497 43-123 (126)
211 2d5f_A Glycinin A3B4 subunit; 49.3 29 0.00098 35.5 6.7 61 403-463 362-423 (493)
212 1fxz_A Glycinin G1; proglycini 49.2 28 0.00094 35.4 6.6 54 409-462 339-393 (476)
213 3es1_A Cupin 2, conserved barr 49.1 25 0.00086 30.1 5.4 47 411-462 82-128 (172)
214 3bcw_A Uncharacterized protein 48.6 19 0.00065 28.9 4.3 45 414-464 55-99 (123)
215 1zvf_A 3-hydroxyanthranilate 3 47.9 27 0.00092 29.7 5.1 61 426-492 52-115 (176)
216 1v70_A Probable antibiotics sy 47.8 39 0.0013 25.3 6.0 46 411-462 31-77 (105)
217 3rns_A Cupin 2 conserved barre 47.6 52 0.0018 29.5 7.7 67 410-487 155-222 (227)
218 2xp1_A SPT6; transcription, IW 46.4 54 0.0019 28.1 7.0 38 390-433 12-49 (178)
219 3d0j_A Uncharacterized protein 44.3 26 0.00089 28.6 4.3 65 422-491 44-110 (140)
220 2e9q_A 11S globulin subunit be 44.2 39 0.0013 34.1 6.7 61 403-463 317-378 (459)
221 1orq_C Potassium channel; volt 43.1 46 0.0016 29.7 6.6 17 172-188 99-115 (223)
222 1yfu_A 3-hydroxyanthranilate-3 43.0 31 0.0011 29.3 4.8 59 427-492 54-113 (174)
223 2pyt_A Ethanolamine utilizatio 42.7 29 0.00098 28.2 4.6 45 412-464 61-105 (133)
224 3h8u_A Uncharacterized conserv 41.7 66 0.0023 25.2 6.7 48 410-462 41-89 (125)
225 3ibm_A Cupin 2, conserved barr 40.7 48 0.0017 28.0 5.9 47 411-463 59-105 (167)
226 3d82_A Cupin 2, conserved barr 39.7 68 0.0023 23.8 6.3 54 426-490 48-101 (102)
227 2kyh_A KVAP, voltage-gated pot 38.7 23 0.00079 29.4 3.4 16 178-193 112-127 (147)
228 3i7d_A Sugar phosphate isomera 38.4 38 0.0013 28.5 4.9 47 411-463 46-94 (163)
229 1fi2_A Oxalate oxidase, germin 38.4 65 0.0022 28.2 6.6 54 410-463 74-130 (201)
230 2vqa_A SLL1358 protein, MNCA; 38.1 50 0.0017 32.0 6.4 52 411-463 55-107 (361)
231 3ksc_A LEGA class, prolegumin; 37.9 56 0.0019 33.2 6.7 61 403-463 353-414 (496)
232 1j58_A YVRK protein; cupin, de 37.9 48 0.0016 32.6 6.3 52 410-462 81-132 (385)
233 3l2h_A Putative sugar phosphat 37.7 38 0.0013 28.4 4.8 46 411-462 49-96 (162)
234 3kgz_A Cupin 2 conserved barre 36.3 42 0.0014 28.1 4.7 45 412-462 48-92 (156)
235 2e9q_A 11S globulin subunit be 35.9 47 0.0016 33.5 5.8 65 401-465 56-140 (459)
236 3jzv_A Uncharacterized protein 35.8 41 0.0014 28.5 4.7 45 412-462 57-101 (166)
237 2fqp_A Hypothetical protein BP 35.6 39 0.0013 25.3 4.1 49 411-463 21-70 (97)
238 2cav_A Protein (canavalin); vi 34.9 36 0.0012 34.2 4.8 54 409-464 87-140 (445)
239 1sfn_A Conserved hypothetical 34.4 58 0.002 29.6 5.8 49 409-463 166-215 (246)
240 2b8m_A Hypothetical protein MJ 34.4 49 0.0017 25.7 4.7 45 413-462 32-76 (117)
241 1o4t_A Putative oxalate decarb 34.2 56 0.0019 26.2 5.1 46 411-462 60-106 (133)
242 1vj2_A Novel manganese-contain 34.1 51 0.0017 26.1 4.8 46 412-463 52-97 (126)
243 1ors_C Potassium channel; volt 33.2 50 0.0017 26.7 4.6 23 175-197 97-119 (132)
244 3qac_A 11S globulin SEED stora 33.0 87 0.003 31.5 7.1 61 403-463 318-379 (465)
245 1fxz_A Glycinin G1; proglycini 32.9 61 0.0021 32.9 6.1 63 402-464 42-125 (476)
246 4axo_A EUTQ, ethanolamine util 32.3 49 0.0017 27.5 4.4 52 427-489 83-134 (151)
247 2vpv_A Protein MIF2, MIF2P; nu 32.3 42 0.0014 28.5 4.0 31 427-463 109-139 (166)
248 2ea7_A 7S globulin-1; beta bar 32.2 45 0.0015 33.5 4.9 53 409-463 62-114 (434)
249 1uij_A Beta subunit of beta co 32.0 44 0.0015 33.3 4.8 53 409-463 50-102 (416)
250 1y9q_A Transcriptional regulat 31.9 82 0.0028 27.1 6.2 45 412-462 108-154 (192)
251 3cew_A Uncharacterized cupin p 31.9 61 0.0021 25.5 4.9 47 411-463 29-77 (125)
252 2bnm_A Epoxidase; oxidoreducta 31.8 70 0.0024 27.7 5.8 50 412-463 121-173 (198)
253 2vqa_A SLL1358 protein, MNCA; 31.7 81 0.0028 30.5 6.7 53 410-463 236-289 (361)
254 4i4a_A Similar to unknown prot 31.4 1.8E+02 0.0063 22.5 8.1 77 412-499 38-118 (128)
255 4b29_A Dimethylsulfoniopropion 31.2 83 0.0028 27.9 5.8 45 414-463 138-182 (217)
256 3kgl_A Cruciferin; 11S SEED gl 31.1 58 0.002 32.8 5.5 61 403-463 318-379 (466)
257 1sfn_A Conserved hypothetical 30.6 1.9E+02 0.0066 26.0 8.7 64 412-488 54-117 (246)
258 2qjv_A Uncharacterized IOLB-li 29.2 1.9E+02 0.0064 26.7 8.1 78 409-491 30-111 (270)
259 1sq4_A GLXB, glyoxylate-induce 28.6 80 0.0027 29.3 5.8 49 409-463 192-241 (278)
260 2oa2_A BH2720 protein; 1017534 28.2 1.4E+02 0.0047 24.3 6.7 51 412-462 47-98 (148)
261 2phl_A Phaseolin; plant SEED s 28.0 53 0.0018 32.4 4.5 51 409-461 53-103 (397)
262 3beh_A MLL3241 protein; transm 27.2 4 0.00014 40.1 -3.8 11 222-232 162-172 (355)
263 2qnk_A 3-hydroxyanthranilate 3 26.9 1.1E+02 0.0037 28.3 5.9 64 420-491 44-107 (286)
264 1j58_A YVRK protein; cupin, de 26.7 99 0.0034 30.2 6.4 53 410-463 259-312 (385)
265 3bu7_A Gentisate 1,2-dioxygena 26.4 66 0.0022 31.7 4.8 75 410-495 296-373 (394)
266 2q30_A Uncharacterized protein 25.9 1.2E+02 0.004 22.8 5.6 67 411-487 36-104 (110)
267 4dxw_A Navrh, ION transport pr 25.8 75 0.0026 28.4 4.9 17 267-283 163-179 (229)
268 4e2q_A Ureidoglycine aminohydr 25.7 68 0.0023 29.6 4.5 70 410-490 72-142 (266)
269 3s7i_A Allergen ARA H 1, clone 25.3 71 0.0024 31.8 4.9 52 410-463 46-97 (418)
270 2f4p_A Hypothetical protein TM 24.8 1.8E+02 0.0062 23.6 6.8 48 411-463 51-98 (147)
271 2kwv_A RAD30 homolog B, DNA po 24.6 26 0.00089 22.1 1.0 19 365-383 17-35 (48)
272 2opk_A Hypothetical protein; p 23.9 98 0.0033 23.9 4.7 34 426-463 51-84 (112)
273 3h7j_A Bacilysin biosynthesis 23.9 1.1E+02 0.0036 27.7 5.6 46 410-461 36-81 (243)
274 1sef_A Conserved hypothetical 23.7 1.1E+02 0.0038 28.2 5.8 48 410-463 184-232 (274)
275 3h7j_A Bacilysin biosynthesis 22.9 1.3E+02 0.0043 27.2 5.9 47 412-464 149-196 (243)
276 1lr5_A Auxin binding protein 1 22.7 1E+02 0.0035 25.6 4.9 52 411-462 44-98 (163)
277 2phl_A Phaseolin; plant SEED s 22.7 83 0.0028 31.0 4.8 57 408-464 239-302 (397)
278 1x82_A Glucose-6-phosphate iso 22.2 1.2E+02 0.004 26.2 5.3 33 429-462 97-129 (190)
279 2q1z_B Anti-sigma factor CHRR, 22.0 1.7E+02 0.0058 25.4 6.2 65 409-488 126-192 (195)
280 3pjz_A Potassium uptake protei 21.8 1.6E+02 0.0056 29.9 6.9 44 262-305 303-348 (494)
281 3bu7_A Gentisate 1,2-dioxygena 21.4 73 0.0025 31.4 4.0 69 411-489 126-195 (394)
282 3myx_A Uncharacterized protein 21.3 1.1E+02 0.0036 27.8 4.8 32 428-464 186-217 (238)
283 2qnk_A 3-hydroxyanthranilate 3 21.3 2.2E+02 0.0077 26.2 6.9 69 411-491 210-278 (286)
284 3ht1_A REMF protein; cupin fol 20.9 73 0.0025 25.6 3.5 31 428-462 59-89 (145)
285 1rc6_A Hypothetical protein YL 20.8 1.2E+02 0.004 27.7 5.3 68 412-488 63-132 (261)
286 2lh0_A Histone chaperone RTT10 20.5 49 0.0017 23.2 1.8 15 368-382 8-22 (70)
287 3or8_A Transcription elongatio 20.5 1.9E+02 0.0066 25.1 6.1 40 390-434 6-46 (197)
288 4e2q_A Ureidoglycine aminohydr 20.2 1.6E+02 0.0054 27.1 5.8 49 409-463 187-236 (266)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=5.1e-41 Score=340.49 Aligned_cols=339 Identities=17% Similarity=0.148 Sum_probs=133.7
Q ss_pred ECCCChhHHHHHHHHHHHHHHHHHHhchheeec--cCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHH
Q 007323 66 FHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFF--RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPI 143 (608)
Q Consensus 66 ~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~--~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i 143 (608)
+.|.|+... .+++++++.+++++.+..... ......+..++.++.++|++|+++++..+.. .
T Consensus 3 ~~p~s~~f~---~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~~--~----------- 66 (355)
T 3beh_A 3 VLPFLRIYA---PLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRRA--G----------- 66 (355)
T ss_dssp ----CCSSS---SHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--C-----------
T ss_pred CCchhHHHH---HHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccccc--c-----------
Confidence 367887644 344444444444444432111 1111123445666666789999999854311 0
Q ss_pred HHHHhhc-cchhHhhhh-ccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHH
Q 007323 144 ALRYLRS-SFIIDLFSC-MPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFF---HKMEKDIRINYMFSRIVKLIAVELY 218 (608)
Q Consensus 144 ~~~yl~~-~f~iDl~s~-lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (608)
.+|.++ |.++|++++ +|++..+. .+ .. .+|++|++|++|+.++. +.+..... ....++..++..+++
T Consensus 67 -~~~~~~~~~i~Dl~~i~~p~~~~~~-~~-~~---~~r~lr~~R~lrl~r~~~~~~~l~~~l~--~~~~~l~~~~~~~~~ 138 (355)
T 3beh_A 67 -VVRDRTPKIAIDVLAVLVPLAAFLL-DG-SP---DWSLYCAVWLLKPLRDSTFFPVLGRVLA--NEARNLIGVTTLFGV 138 (355)
T ss_dssp -SSCCCHHHHHHHHHHHHHHHHHHHS-CC-SG---GGGGGGGGGGSHHHHTCSSHHHHHHHHH--HTHHHHHHHHHHHHH
T ss_pred -ceeccCcchHHHHHHHHHHHHHHHh-cc-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 345555 569999999 68876542 11 22 23444444444444443 33332221 223356667777788
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHH
Q 007323 219 CSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298 (608)
Q Consensus 219 ~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~ 298 (608)
++|++||++|.++...++ +.+..|.+|+||+++||||+||||+.|.|..|++++++
T Consensus 139 ~~~~~a~~~~~~e~~~~~------------------------~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~ 194 (355)
T 3beh_A 139 VLFAVALAAYVIERDIQP------------------------EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGA 194 (355)
T ss_dssp HHHHHHHHHHHHHTTTCH------------------------HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCC------------------------cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHH
Confidence 899999999998753211 22446889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhccccHHHHHhhCCHHHHH
Q 007323 299 YVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRA 378 (608)
Q Consensus 299 ~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~ 378 (608)
++++|++++++++|.+++.+.+. +++ +++.
T Consensus 195 ~~~~g~~~~~~~~~~i~~~~~~~---------~~~------------------~~~~----------------------- 224 (355)
T 3beh_A 195 VMMSGIGIFGLWAGILATGFYQE---------VRR------------------GDFV----------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHH------------------HHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHH------------------Hhhc-----------------------
Confidence 99999999999999998766431 100 0000
Q ss_pred HHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCC
Q 007323 379 KISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHP 458 (608)
Q Consensus 379 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~ 458 (608)
...+.++++|+|+++++++++++...++.+.++|||+|+++||+.+++|+|.+|.++++..+ ...+++
T Consensus 225 -----~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~ 292 (355)
T 3beh_A 225 -----RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGP 292 (355)
T ss_dssp -----HHHC-----------------------------------------------------------------------
T ss_pred -----ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECC
Confidence 02467889999999999999999999999999999999999999999999999999998743 257899
Q ss_pred CCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 459 NSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 459 G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
|++|||.+++.+.|+.++++|.++|+++.+++++|.++++++|++...+.+.+.++
T Consensus 293 G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r 348 (355)
T 3beh_A 293 GAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 348 (355)
T ss_dssp --------------------------------------------------------
T ss_pred CCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888776653
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.98 E-value=7.6e-31 Score=243.26 Aligned_cols=190 Identities=21% Similarity=0.472 Sum_probs=179.1
Q ss_pred CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc-cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCC
Q 007323 321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 399 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~-~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~ 399 (608)
++++.+|+++++.+++||+++++|++||.||++|++|.|+. ..++++++++||++||.++..+.+.++++++|+|++++
T Consensus 4 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~ 83 (198)
T 2ptm_A 4 DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGAD 83 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCC
Confidence 35678999999999999999999999999999999999975 45688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEE
Q 007323 400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 479 (608)
Q Consensus 400 ~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a 479 (608)
++++..++..++.+.|.||++|+++||+++++|||.+|.|+++. .+|+ ++..+++|++||+.+++.+.++.++++|
T Consensus 84 ~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a 159 (198)
T 2ptm_A 84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKC 159 (198)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEE
T ss_pred HHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEE
Confidence 99999999999999999999999999999999999999999986 5665 7889999999999999999999999999
Q ss_pred eceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 480 ~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
.++|+++.+++++|.++++.+|.+...+.+.+..+
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r 194 (198)
T 2ptm_A 160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR 194 (198)
T ss_dssp SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 99999999999999999999999999888877663
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=3.3e-31 Score=248.57 Aligned_cols=193 Identities=20% Similarity=0.425 Sum_probs=173.6
Q ss_pred HHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc--cccHHHHHhhCCHHHHHHHHHHHhHhhhccc
Q 007323 316 ALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKV 392 (608)
Q Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~--~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~ 392 (608)
+++++ +.++.+|+++++.+++||+++++|++||.||++|++|.|+. +.++++++++||++||.++..+++..++ ++
T Consensus 2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~ 80 (212)
T 3ukn_A 2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL 80 (212)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence 45555 56678999999999999999999999999999999999964 4568889999999999999999998877 89
Q ss_pred ccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-
Q 007323 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI- 471 (608)
Q Consensus 393 ~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~- 471 (608)
|+|++++++++..++..++.+.|.||++|+++||+++++|+|.+|.|+++. +| .++..+++|++||+.+++.+.
T Consensus 81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~~ 155 (212)
T 3ukn_A 81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQV 155 (212)
T ss_dssp GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCCC
Confidence 999999999999999999999999999999999999999999999999986 44 578999999999999999988
Q ss_pred -CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 472 -~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
++.++++|.++|+++.+++++|.++++.+|.+...+++.+..+
T Consensus 156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~ 199 (212)
T 3ukn_A 156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHD 199 (212)
T ss_dssp CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999998888663
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=3.7e-30 Score=239.36 Aligned_cols=188 Identities=23% Similarity=0.453 Sum_probs=176.1
Q ss_pred CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc-cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCC
Q 007323 321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS 399 (608)
Q Consensus 321 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~-~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~ 399 (608)
+.++.+|+++++.+++||+++++|++||.||++|++|.|+. ..++++++++||+.||.++..+.+.++++++|+|.+++
T Consensus 5 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~ 84 (202)
T 3bpz_A 5 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANAD 84 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCC
Confidence 45678999999999999999999999999999999999974 46789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEE
Q 007323 400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV 479 (608)
Q Consensus 400 ~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a 479 (608)
++++..++..++.+.|.||++|+++|++++++|||.+|.|+++. .+|++ ..+++|++||+.+++.+.++.++++|
T Consensus 85 ~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~---~~l~~G~~fGe~~~~~~~~~~~~v~a 159 (202)
T 3bpz_A 85 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE---MKLSDGSYFGEICLLTRGRRTASVRA 159 (202)
T ss_dssp HHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC---EEEETTCEECHHHHHHCSBCSSEEEE
T ss_pred HHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE---EEEcCCCEeccHHHhcCCCcccEEEE
Confidence 99999999999999999999999999999999999999999975 56665 36899999999999999999999999
Q ss_pred eceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 480 ~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
.++|+++.+++++|.++++.+|.+...+.+.+..
T Consensus 160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~ 193 (202)
T 3bpz_A 160 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID 193 (202)
T ss_dssp SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred eeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999888877655
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.95 E-value=8.4e-28 Score=226.24 Aligned_cols=207 Identities=20% Similarity=0.189 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHHhchhee--eccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc
Q 007323 75 AWTKFILIWAVYSSIFTPVEFG--FFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF 152 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~--f~~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f 152 (608)
.|+.+++++++++.+.+.+... +..+....+..+|.+++++|++|+++|++++.. +++|+|+ +
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~--------------~~~y~~~-~ 73 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVKK-T 73 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC--------------HHHHHHH-H
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccccc--------------HHHHHHH-h
Confidence 4888888888888887766543 333345567899999999999999999998732 3899998 8
Q ss_pred hhHhhhhccHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 153 IIDLFSCMPWDLIYKASGR---KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYY 229 (608)
Q Consensus 153 ~iDl~s~lP~~~~~~~~~~---~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~ 229 (608)
++|+++++|++........ ...++.+|++|++|+.|+.+..++..+.........++..++..+++++|++||++|+
T Consensus 74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 153 (223)
T 1orq_C 74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI 153 (223)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876531111 2245566666666666655422222111111111124666777788889999999998
Q ss_pred HhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHH
Q 007323 230 LATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAY 309 (608)
Q Consensus 230 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~ 309 (608)
++...++ +...+|.+|+||+++||||+||||+.|.|..|++++++++++|+.++++
T Consensus 154 ~e~~~~~------------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~ 209 (223)
T 1orq_C 154 VEYPDPN------------------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL 209 (223)
T ss_dssp TTSSSTT------------------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcC------------------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence 7642111 1123588999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc
Q 007323 310 LIGNMTALIVK 320 (608)
Q Consensus 310 ~i~~i~~~~~~ 320 (608)
++|.+++.+++
T Consensus 210 ~i~~i~~~~~~ 220 (223)
T 1orq_C 210 LIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.93 E-value=2.4e-26 Score=240.51 Aligned_cols=229 Identities=15% Similarity=0.187 Sum_probs=163.4
Q ss_pred cCCCcccccceEECCCC-hhHHHHHHHHHHHHHHHHHHhchhee--eccC--------------------------CCcC
Q 007323 54 LSGFRHFSRNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFG--FFRG--------------------------LSKN 104 (608)
Q Consensus 54 ~~~~~~~~~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~--f~~~--------------------------~~~~ 104 (608)
++++|.+.+..+.+|.| ....+|+.+++++++.++++..+... +... ....
T Consensus 161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2r9r_B 161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP 240 (514)
T ss_dssp SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhH
Confidence 44566677777778875 56777888888887777776655432 1111 1234
Q ss_pred eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHhhhhccHHHHHhhcC----------chh
Q 007323 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASG----------RKE 173 (608)
Q Consensus 105 ~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl~s~lP~~~~~~~~~----------~~~ 173 (608)
+.++|.++.++|++|+++|++++.. .++|+++ |.++|+++++|+++.+.... ...
T Consensus 241 l~~ie~i~~~iFtiE~ilR~~~~~~--------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~ 306 (514)
T 2r9r_B 241 FFIVETLCIIWFSFEFLVRFFACPS--------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRR 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSC--------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc--------------HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Confidence 6789999999999999999987631 1589999 66999999999987654321 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCC
Q 007323 174 AVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDY 252 (608)
Q Consensus 174 ~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~ 252 (608)
.++++|++|++|++|+.++...++.... +......+..+++.++++++++|+++|+++...++
T Consensus 307 ~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~---------------- 370 (514)
T 2r9r_B 307 VVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD---------------- 370 (514)
T ss_dssp HHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT----------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCC----------------
Confidence 4555666666666666665555544322 22223345556666677788889888876432111
Q ss_pred CcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 253 SYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 253 ~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
+.+..|..|+||+++||||+||||+.|.|..+++++++++++|++++++++|.+.+.+..
T Consensus 371 --------~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 371 --------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp --------CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred --------ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112357799999999999999999999999999999999999999999999999887765
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.84 E-value=1.4e-20 Score=167.66 Aligned_cols=144 Identities=24% Similarity=0.391 Sum_probs=126.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEe
Q 007323 365 EASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 444 (608)
Q Consensus 365 ~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~ 444 (608)
.+++++.||++||.++..+.+.++++++|+|++++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ccCCceeeeEEeCCCCeecchhhhcC--CCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 445 EENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 445 ~~~g~~~~~~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++..+..+++|++||+.+++.+ .++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus 84 ----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 150 (160)
T 4f8a_A 84 ----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL 150 (160)
T ss_dssp ----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCCC
T ss_pred ----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2347899999999999999988 6899999999999999999999999999999999998888743
No 8
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.82 E-value=6e-20 Score=158.71 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=70.1
Q ss_pred cchhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 151 SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYL 230 (608)
Q Consensus 151 ~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~ 230 (608)
+-++|+++++|+ +|.+|++|++|++ +.|+.. ..... .+...++.+++++.++|+++|++
T Consensus 15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~~~------~l~~~--~~~~~~~~~~~~i~~~a~~~~~~ 73 (155)
T 2a9h_A 15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRHGS------ALHWR--AAGAATVLLVIVLLAGSYLAVLA 73 (155)
T ss_dssp --------------------------------------------------CCHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHHHH------HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999997 4555666666655 333311 11111 12222333444455677777777
Q ss_pred hccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHH
Q 007323 231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL 310 (608)
Q Consensus 231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~ 310 (608)
+...++ +....|.+|+||+++|+|||||||+.|.|..+++++++++++|+.+++++
T Consensus 74 E~~~~~------------------------~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~ 129 (155)
T 2a9h_A 74 ERGAPG------------------------AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLV 129 (155)
T ss_dssp HTTSSC------------------------SSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCC------------------------CccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 643211 11245889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 007323 311 IGNMTALIVKG 321 (608)
Q Consensus 311 i~~i~~~~~~~ 321 (608)
++.+++.+.+.
T Consensus 130 ~~~i~~~~~~~ 140 (155)
T 2a9h_A 130 FAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999998873
No 9
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.79 E-value=5.1e-19 Score=153.99 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=115.2
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee---eEEeCCCCee
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY---VSYLHPNSSF 462 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~---~~~l~~G~~f 462 (608)
.+.++++|+|++++++.+..++..++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.+ +..+++|++|
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f 84 (142)
T 3mdp_A 5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84 (142)
T ss_dssp TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence 4688999999999999999999999999999999999999999999999999999998888998888 9999999999
Q ss_pred cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
|+.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus 85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 135 (142)
T 3mdp_A 85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA 135 (142)
T ss_dssp CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988888765
No 10
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.78 E-value=3.5e-18 Score=149.99 Aligned_cols=128 Identities=19% Similarity=0.299 Sum_probs=122.3
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++++++|+|..++++++..++..++.+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++..+..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 46789999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+++.+.++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 131 (149)
T 2pqq_A 84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR 131 (149)
T ss_dssp GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877765
No 11
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.78 E-value=8.6e-19 Score=156.13 Aligned_cols=129 Identities=22% Similarity=0.346 Sum_probs=119.0
Q ss_pred HHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCC
Q 007323 380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPN 459 (608)
Q Consensus 380 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G 459 (608)
.......++++++|+|++++++.+..++..++.+.|.+|++|+++|++.+++|+|.+|.|+++. +.+|++..+..+++|
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G 109 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNR 109 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESC
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCC
Confidence 3345567899999999999999999999999999999999999999999999999999999998 789999999999999
Q ss_pred CeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHH
Q 007323 460 SSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509 (608)
Q Consensus 460 ~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~ 509 (608)
++||+.+++.+.++.++++|.++|+++.+++++|.++++++|...+.++.
T Consensus 110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 159 (161)
T 3idb_B 110 GSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE 159 (161)
T ss_dssp CEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred CEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987655443
No 12
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.78 E-value=3.5e-18 Score=156.09 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=126.2
Q ss_pred HHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeC
Q 007323 378 AKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLH 457 (608)
Q Consensus 378 ~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~ 457 (608)
.+...+...++++++|+|+.++++.+..++..++.+.|++|++|+++|++.+.+|+|.+|.|+++..+++|++.++..++
T Consensus 30 ~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~ 109 (187)
T 3gyd_A 30 ADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVG 109 (187)
T ss_dssp GGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEcc
Confidence 33444556789999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred CCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 458 ~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+|++||+.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus 110 ~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 165 (187)
T 3gyd_A 110 AGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ 165 (187)
T ss_dssp TTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888855443
No 13
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.77 E-value=1.4e-18 Score=150.65 Aligned_cols=131 Identities=24% Similarity=0.272 Sum_probs=117.1
Q ss_pred hCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCce
Q 007323 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE 450 (608)
Q Consensus 371 ~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~ 450 (608)
++|..+|.+...+...++++++++|+.++++.+..++..++.+.|.+|++|+++|++.+.+|+|.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTE-
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCE-
Confidence 6788888888888889999999999999999999999999999999999999999999999999999999965 553
Q ss_pred eeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323 451 DYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (608)
Q Consensus 451 ~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~ 506 (608)
.+..+.+|++||+.+++.+.++.++++|.++|+++.+++++|.++++++|...++
T Consensus 83 -~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 83 -KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp -EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred -EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 7889999999999999999999999999999999999999999999999987654
No 14
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.76 E-value=6.1e-18 Score=149.37 Aligned_cols=128 Identities=14% Similarity=0.228 Sum_probs=117.9
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++++++++|..++++.+..++..++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 56799999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred hhhcCCC-cccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 SILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+++.+.+ +.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus 91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 139 (154)
T 2z69_A 91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 139 (154)
T ss_dssp GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence 9999988 99999999999999999999999999999999999888766
No 15
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.73 E-value=2.6e-17 Score=151.45 Aligned_cols=128 Identities=19% Similarity=0.203 Sum_probs=120.4
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
..+++++++|.+++++++..+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 45778899999999999999999999999999999999999999999999999999998899999999999999999987
Q ss_pred -hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 -SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 -~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+++.+.|+.++++|.++|+++.+++++|.++++++|.+...+...+..
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 134 (194)
T 3dn7_A 86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK 134 (194)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999887776655
No 16
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.73 E-value=3.3e-17 Score=153.63 Aligned_cols=125 Identities=22% Similarity=0.349 Sum_probs=117.8
Q ss_pred hcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhh
Q 007323 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL 468 (608)
Q Consensus 389 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~ 468 (608)
|+++|+|++++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+++|++.++..+++|++||+.+++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~ 80 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL 80 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence 46899999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 469 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 469 ~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
.+.++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus 81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 125 (216)
T 4ev0_A 81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR 125 (216)
T ss_dssp HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888877765
No 17
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.73 E-value=1.2e-17 Score=138.87 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|+||+||||++|.|..+++++++++++|+.+++++++.+++.+.+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999998865
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.72 E-value=2.7e-17 Score=156.54 Aligned_cols=131 Identities=16% Similarity=0.227 Sum_probs=124.3
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....++++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus 7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~ 86 (237)
T 3fx3_A 7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF 86 (237)
T ss_dssp HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence 34467899999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
|+.+++.+.++.++++|.++|+++.+++++|.+++.++|.+...+++.+..
T Consensus 87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 137 (237)
T 3fx3_A 87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG 137 (237)
T ss_dssp CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888877765
No 19
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.72 E-value=3.5e-17 Score=155.11 Aligned_cols=128 Identities=18% Similarity=0.265 Sum_probs=120.9
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+++|++.++..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 46789999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+++.+.++.++++|.++|+++.+++++|.+++..+|.+...+++.+..
T Consensus 85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (231)
T 3e97_A 85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR 132 (231)
T ss_dssp TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988887766
No 20
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.71 E-value=2.3e-17 Score=140.18 Aligned_cols=92 Identities=18% Similarity=0.290 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH-HhhCCC
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY-INRNRL 343 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-m~~~~l 343 (608)
.|.+|+||+++|+|||||||++|.|..|++++++++++|+.+++++++.+++.+.+....++.+++.+...+. .+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3789999999999999999999999999999999999999999999999999887633333333333333333 333455
Q ss_pred CHHHHHHHHHHHH
Q 007323 344 GRDIRDQIIGHLR 356 (608)
Q Consensus 344 ~~~l~~rv~~y~~ 356 (608)
+++.+..++++++
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 5666666666554
No 21
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.71 E-value=8.6e-17 Score=139.05 Aligned_cols=123 Identities=22% Similarity=0.309 Sum_probs=114.3
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..++++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+ ...+++|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~ 81 (138)
T 1vp6_A 9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGE 81 (138)
T ss_dssp HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECH
T ss_pred HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeee
Confidence 4578999999999999999999999999999999999999999999999999999998632 247899999999
Q ss_pred hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+.++
T Consensus 82 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r 131 (138)
T 1vp6_A 82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER 131 (138)
T ss_dssp HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998887663
No 22
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.71 E-value=1e-16 Score=150.67 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=120.2
Q ss_pred hhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe--ecc
Q 007323 387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS--FGE 464 (608)
Q Consensus 387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~--fGe 464 (608)
++++++|+|..+++++++.+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+++|++.++..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 578999999999999999999999999999999999999999999999999999999899999999999999999 799
Q ss_pred hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
.+++.+.|+.++++|.++|+++.+++++|.+++.++|.+...++..+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 131 (220)
T 3dv8_A 83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT 131 (220)
T ss_dssp GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777755
No 23
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.71 E-value=2.9e-17 Score=155.25 Aligned_cols=128 Identities=20% Similarity=0.327 Sum_probs=122.2
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++++++|+|..++++++..+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 46789999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus 85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 132 (227)
T 3d0s_A 85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR 132 (227)
T ss_dssp HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888877765
No 24
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.70 E-value=1.1e-16 Score=151.78 Aligned_cols=129 Identities=17% Similarity=0.145 Sum_probs=122.6
Q ss_pred hHhhhcccccccCCCHHHHHHHHHH--ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 385 YLPYIEKVPLFKGCSSEFINQIVIR--LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....++++|+|..++++++..++.. ++.+.|++|++|+++||+.+.+|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus 16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f 95 (232)
T 1zyb_A 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI 95 (232)
T ss_dssp HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence 4577999999999999999999998 99999999999999999999999999999999998899999999999999999
Q ss_pred cchhhhcCCC-cccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 463 GEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 463 Ge~~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
|+.+++.+.+ +.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus 96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 147 (232)
T 1zyb_A 96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN 147 (232)
T ss_dssp CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999988 89999999999999999999999999999999988887765
No 25
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.70 E-value=3.2e-17 Score=141.61 Aligned_cols=119 Identities=18% Similarity=0.346 Sum_probs=108.7
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeE--EeCCCCeec
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVS--YLHPNSSFG 463 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~--~l~~G~~fG 463 (608)
.++++++|+|+.++++++..++..++.+.|++|++|+++||+.+.+|+|.+|.|++. .+.+|++.++. .+.+|++||
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fG 83 (137)
T 1wgp_A 5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCG 83 (137)
T ss_dssp SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSS
T ss_pred HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEec
Confidence 467899999999999999999999999999999999999999999999999999965 56788887777 999999999
Q ss_pred chhh---hcCCC------cccEEEEeceeeeEEechhhHHHHHHHhhhcHH
Q 007323 464 EVSI---LCNIP------QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505 (608)
Q Consensus 464 e~~~---~~~~~------~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~ 505 (608)
+.++ +.+.+ +.++++|.++|+++.+++++|.++++++|.+..
T Consensus 84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 9995 77775 578999999999999999999999999998753
No 26
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.69 E-value=5.1e-17 Score=153.56 Aligned_cols=128 Identities=14% Similarity=0.228 Sum_probs=122.4
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++++++|+|.+++++.+..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 46889999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhhcCCC-cccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 SILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+++.+.| +.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus 88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (227)
T 3dkw_A 88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST 136 (227)
T ss_dssp TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999 99999999999999999999999999999999888887765
No 27
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.69 E-value=2.6e-16 Score=138.77 Aligned_cols=118 Identities=24% Similarity=0.361 Sum_probs=108.5
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...++++++|+|..++++.+..+...++.+.|.+|++|+++|++.+++|+|.+|.|+++. +|+ .+..+++|++||
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~fG 109 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEEC
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEee
Confidence 346789999999999999999999999999999999999999999999999999999986 443 678899999999
Q ss_pred chhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (608)
Q Consensus 464 e~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~ 506 (608)
+.+++.+.++.++++|.++|+++.+++++|.++++++|...+.
T Consensus 110 e~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 110 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp CHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred ehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 9999999999999999999999999999999999999876554
No 28
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.68 E-value=2.8e-16 Score=148.74 Aligned_cols=128 Identities=13% Similarity=0.198 Sum_probs=110.4
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
...+++.++|..+++++++.+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+++|++.++..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC-CcccEEEEeceeeeEEechhhHHHHHHHh-----hhcHHHHHHHHhc
Q 007323 466 SILCNI-PQPYTVQVCELCRLLRIDKQSFTNIIDIY-----FCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~-~~~~~~~a~~~~~l~~l~~~~~~~ll~~~-----~~~~~~il~~l~~ 513 (608)
+++.+. ++.++++|.++|+++.+++++|.++++++ |.+...++..+..
T Consensus 90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~ 143 (230)
T 3iwz_A 90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK 143 (230)
T ss_dssp GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence 999875 78899999999999999999999999999 9988888777765
No 29
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.68 E-value=7.8e-18 Score=164.33 Aligned_cols=201 Identities=15% Similarity=0.181 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHhchheee--ccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-c
Q 007323 75 AWTKFILIWAVYSSIFTPVEFGF--FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-S 151 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~f--~~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~ 151 (608)
.++.+++++++.+.+...+...- .......+..+|.++.++|++|+++++..+ + ++|+++ |
T Consensus 31 ~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~------------~----~~y~~~~w 94 (285)
T 3rvy_A 31 FFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH------------R----ISFFKDPW 94 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------------G----GGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------h----HHHHcCCh
Confidence 46777777777666666554321 111223467899999999999999997653 1 679998 5
Q ss_pred chhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYL 230 (608)
Q Consensus 152 f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~ 230 (608)
-++|+++++|..+.. .+ .++.+|++|++|++|+.++.+.++.... .......+..+++.++++..++|++-+.+
T Consensus 95 n~~Dl~~v~~~~i~~--~~---~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~ 169 (285)
T 3rvy_A 95 SLFDFFVVAISLVPT--SS---GFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQL 169 (285)
T ss_dssp HHHHHHHHHHHHSCS--SS---SCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHcc--cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999988865432 12 2445677777777777666655544322 11222234444555555555566554444
Q ss_pred hccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccC-Ccc-cCChhh----HHHHHHHHHHHH
Q 007323 231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYG-DVH-AVNLRE----MVFIMIYVSFDM 304 (608)
Q Consensus 231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGyg-di~-p~~~~e----~~~~~~~~~~g~ 304 (608)
..... .+.+..+..|+||+++|+||+||| |+. |.+..+ ..+++++++.|+
T Consensus 170 f~~~~------------------------~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~ 225 (285)
T 3rvy_A 170 FGERF------------------------PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTF 225 (285)
T ss_dssp HTTTC------------------------HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred hCccc------------------------ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHH
Confidence 32110 022456779999999999999999 985 776644 888899999999
Q ss_pred HHHHHHHHHHHHHHHc
Q 007323 305 ILGAYLIGNMTALIVK 320 (608)
Q Consensus 305 ~~~a~~i~~i~~~~~~ 320 (608)
++.+.++|.+.+.+..
T Consensus 226 ~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 226 VMINLVVAICVDAMAI 241 (285)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887765
No 30
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.68 E-value=1.8e-16 Score=150.26 Aligned_cols=124 Identities=13% Similarity=0.134 Sum_probs=114.1
Q ss_pred cccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhc
Q 007323 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 469 (608)
Q Consensus 390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~ 469 (608)
.++|+|..++++++..+...++.+.|++|++|+++|++.+.+|+|.+|.|+++..+++|++.++..+++|++||+.+++.
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~ 92 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA 92 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence 46899999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 470 ~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+.++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus 93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 136 (232)
T 2gau_A 93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 136 (232)
T ss_dssp TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988887765
No 31
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.68 E-value=5.3e-16 Score=134.32 Aligned_cols=112 Identities=19% Similarity=0.272 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccC
Q 007323 209 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV 288 (608)
Q Consensus 209 ~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~ 288 (608)
.+.+++.++++.+++++++|..... | .|.+|+||+++|+|||||||++|.
T Consensus 26 ~~~~~~~~~~~~~~~g~~~~~~~e~---------~---------------------~~~~a~y~~~~t~tTvGyGd~~p~ 75 (148)
T 3vou_A 26 EFQVLFVLTFLTLTSGTIFYSTVEG---------L---------------------RPLDALYFSVVTLTTVGDGNFSPQ 75 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC---------C---------------------CHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---------C---------------------CHHHHHHHHHHHHHccCCCCCCCC
Confidence 3445556666677788887764321 1 367999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHc-----CchhHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 007323 289 NLREMVFIMIYVSFDMILGAYLIGNMTA------LIVK-----GSKTEKFRDKMTDLMKYINRNRLGRDIRDQ 350 (608)
Q Consensus 289 ~~~e~~~~~~~~~~g~~~~a~~i~~i~~------~~~~-----~~~~~~~~~~~~~~~~~m~~~~l~~~l~~r 350 (608)
|..+++++++.+++|+.++++.++.++. +... .....+..++++++++++++++.|++|+.|
T Consensus 76 t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 76 TDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999999999999999999886 2222 122345667788999999999999999875
No 32
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.67 E-value=3.9e-16 Score=156.64 Aligned_cols=127 Identities=17% Similarity=0.304 Sum_probs=120.5
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
.++|+++|+|+.++++++..+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++ ++..+.+|++||+.
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~ 90 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI 90 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence 46889999999999999999999999999999999999999999999999999999998888887 88999999999999
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
+++.+.++.++++|.++|+++.+++++|.+++ ++|.+...+++.+..+
T Consensus 91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~ 138 (333)
T 4ava_A 91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR 138 (333)
T ss_dssp HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 8999999888777653
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.66 E-value=5.2e-16 Score=153.21 Aligned_cols=142 Identities=23% Similarity=0.243 Sum_probs=128.5
Q ss_pred HHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccC
Q 007323 368 VLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447 (608)
Q Consensus 368 ~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~ 447 (608)
...++|...|.+...+...+.++++++|+.++++++..++..++.+.|++|++|+++||.++.+|+|++|.|++.. +
T Consensus 20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~ 96 (299)
T 3shr_A 20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---E 96 (299)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---T
T ss_pred ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---C
Confidence 4558999999999999999999999999999999999999999999999999999999999999999999999865 4
Q ss_pred CceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 448 g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
| ..+..+.+|++|||.+++.+.|+.++++|.++|+++.+++++|.+++..+|.........++..
T Consensus 97 g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~ 161 (299)
T 3shr_A 97 G--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKS 161 (299)
T ss_dssp T--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhh
Confidence 5 4688999999999999999999999999999999999999999999999987766655555543
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.65 E-value=3.7e-16 Score=154.31 Aligned_cols=131 Identities=21% Similarity=0.325 Sum_probs=123.8
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEec-cCCceeeeEEeCCCCee
Q 007323 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE-ENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~-~~g~~~~~~~l~~G~~f 462 (608)
....+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|+|.+|.|+++... .+|++..+..+++|++|
T Consensus 154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f 233 (299)
T 3shr_A 154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF 233 (299)
T ss_dssp HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence 34678889999999999999999999999999999999999999999999999999999876 68888899999999999
Q ss_pred cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
||.+++.+.|+.++++|.++|+++.+++++|.+++..+|.+...+++.+.++
T Consensus 234 Ge~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r 285 (299)
T 3shr_A 234 GEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAK 285 (299)
T ss_dssp CGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred ChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999988773
No 35
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.65 E-value=1.2e-15 Score=142.30 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=111.3
Q ss_pred ccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-
Q 007323 393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI- 471 (608)
Q Consensus 393 ~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~- 471 (608)
++++.++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~ 81 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ 81 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence 4677899999999999999999999999999999999999999999999998899999999999999999999999887
Q ss_pred CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 472 ~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++.++++|.++|+++.++.++|.++++++|.+...+++.+..
T Consensus 82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (210)
T 3ryp_A 82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 123 (210)
T ss_dssp BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence 899999999999999999999999999999999888877765
No 36
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-17 Score=138.55 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=107.2
Q ss_pred HHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeec-CCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEE
Q 007323 377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSY 455 (608)
Q Consensus 377 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~-~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~ 455 (608)
|.+.......++++++++|..++++.+..++..++.+.|. +|++|+++|+..+.+|+|.+|.|+++. .+|++ ..
T Consensus 6 r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~ 80 (134)
T 2d93_A 6 SGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---EN 80 (134)
T ss_dssp CSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EE
T ss_pred cCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EE
Confidence 3333344556788999999999999999999999999999 999999999999999999999999985 56765 55
Q ss_pred eCCCCeecchhhhcCCCcccEE-EEeceeeeEEechhhHHHHHHHhhh
Q 007323 456 LHPNSSFGEVSILCNIPQPYTV-QVCELCRLLRIDKQSFTNIIDIYFC 502 (608)
Q Consensus 456 l~~G~~fGe~~~~~~~~~~~~~-~a~~~~~l~~l~~~~~~~ll~~~~~ 502 (608)
+.+|++||+.+++.+.++.+++ +|.++|+++.+++++|.+++++.++
T Consensus 81 l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~ 128 (134)
T 2d93_A 81 LFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK 128 (134)
T ss_dssp ECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred ecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence 8999999999999999998898 9999999999999999998877654
No 37
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.63 E-value=8e-16 Score=131.84 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCccc
Q 007323 208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (608)
Q Consensus 208 ~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p 287 (608)
.++..++.+++++++.++++|.++...+++ ....|.+|+||+++|+|||||||++|
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~------------------------~~~~~~~a~yf~~~T~tTvGyGd~~P 62 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERGAPGA------------------------QLITYPRALWWSVETATTVGYGDLYP 62 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSCTTC------------------------CCCCHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------------------ccCCHHHHHHHHheeeecccCCCCcC
Confidence 344555566666777787777765432111 11247899999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 288 ~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|..+++++++++++|+.+++++++.+++.+.+
T Consensus 63 ~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887755
No 38
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=3e-15 Score=139.13 Aligned_cols=116 Identities=15% Similarity=0.265 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC----Cc
Q 007323 398 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI----PQ 473 (608)
Q Consensus 398 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~----~~ 473 (608)
|+++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. |+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~ 80 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER 80 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence 58899999999999999999999999999999999999999999998899999999999999999999999888 89
Q ss_pred ccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 474 ~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
.++++|.++|+++.++.++|.++++++|.+...++..+..
T Consensus 81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 120 (207)
T 2oz6_A 81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD 120 (207)
T ss_dssp CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888877765
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.61 E-value=6.9e-15 Score=144.54 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=116.4
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCC-ceeeeEEeCCCCeec
Q 007323 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFG 463 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g-~~~~~~~l~~G~~fG 463 (608)
...+++++++|..+++..+..++..++.+.|.+|++|+++|++++.+|+|.+|.|+++....+| ++..+..+++|++||
T Consensus 155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG 234 (291)
T 2qcs_B 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG 234 (291)
T ss_dssp HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence 3466788999999999999999999999999999999999999999999999999999766655 457889999999999
Q ss_pred chhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHh
Q 007323 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512 (608)
Q Consensus 464 e~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~ 512 (608)
|.+++.+.++.++++|.++|+++.+++++|.+++..+|++..+.++.+.
T Consensus 235 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~ 283 (291)
T 2qcs_B 235 EIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN 283 (291)
T ss_dssp SGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred HHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987766665553
No 40
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.61 E-value=1.5e-15 Score=156.15 Aligned_cols=127 Identities=22% Similarity=0.362 Sum_probs=117.8
Q ss_pred HHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCC
Q 007323 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460 (608)
Q Consensus 381 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~ 460 (608)
......+.++++++|+.++++.+..++..+..+.|.+|++|+++|+.++.+|+|.+|.|+++. +.+|++..+..+.+|+
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~ 217 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRG 217 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCC
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCC
Confidence 345567889999999999999999999999999999999999999999999999999999988 6789888999999999
Q ss_pred eecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHH
Q 007323 461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508 (608)
Q Consensus 461 ~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il 508 (608)
+|||.+++.+.|+.++++|.++|+++.|++++|..++..+|......+
T Consensus 218 ~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~ 265 (416)
T 3tnp_B 218 SFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 265 (416)
T ss_dssp EECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSS
T ss_pred EEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHH
Confidence 999999999999999999999999999999999999999887654433
No 41
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.61 E-value=1.8e-15 Score=141.31 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=108.1
Q ss_pred cccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC
Q 007323 392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471 (608)
Q Consensus 392 ~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~ 471 (608)
-|+|++.++..+..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~ 83 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE 83 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence 47889999999999999999999999999999999999999999999999998899999999999999999999998876
Q ss_pred -CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 472 -~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus 84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 126 (213)
T 1o5l_A 84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE 126 (213)
T ss_dssp CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999888887766
No 42
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.59 E-value=8e-15 Score=141.33 Aligned_cols=118 Identities=16% Similarity=0.280 Sum_probs=109.4
Q ss_pred cCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-Ccc
Q 007323 396 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP 474 (608)
Q Consensus 396 ~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-~~~ 474 (608)
..++++.++.+...++.+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. ++.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~ 134 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 134 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence 5589999999999999999999999999999999999999999999998899999999999999999999999888 899
Q ss_pred cEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 475 ~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++++|.++|+++.++++.|.+++.++|.+...++..+..
T Consensus 135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~ 173 (260)
T 3kcc_A 135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR 173 (260)
T ss_dssp SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888877765
No 43
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.59 E-value=3.1e-15 Score=157.54 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=128.4
Q ss_pred CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc--
Q 007323 372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-- 449 (608)
Q Consensus 372 lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~-- 449 (608)
.|+..|.+...+...+.++++++|+.++++++..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+.+|+
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~ 106 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD 106 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence 466667777777788999999999999999999999999999999999999999999999999999999999888885
Q ss_pred eeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 450 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 450 ~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+.++..+++|++||+.+ +.+.++.++++|.++|+++.+++++|.+++.++|.+...+++.+..
T Consensus 107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~ 169 (469)
T 1o7f_A 107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYG 169 (469)
T ss_dssp CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTS
T ss_pred ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 47899999999999999 8999999999999999999999999999999999987766654444
No 44
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.59 E-value=2.3e-15 Score=141.36 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=113.1
Q ss_pred HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
..+++++|+|..++++.+..+...++.+.|++|++|+++|++.+++|+|.+|.|+++ .+.+|++.++..+++|++||+
T Consensus 3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~- 80 (220)
T 2fmy_A 3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT- 80 (220)
T ss_dssp TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence 457899999999999999999999999999999999999999999999999999995 678999999999999999998
Q ss_pred hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus 81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 122 (220)
T 2fmy_A 81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD 122 (220)
T ss_dssp ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999888877765
No 45
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=1.3e-14 Score=142.51 Aligned_cols=127 Identities=23% Similarity=0.364 Sum_probs=117.4
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.++++|+|+.++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++. +| ..+..+.+|++|
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~f 109 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSF 109 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEE
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCcc
Confidence 4457789999999999999999999999999999999999999999999999999999987 45 368899999999
Q ss_pred cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
|+.+++.+.++.++++|.++|+++.+++++|.+++..+|.....+...++.+
T Consensus 110 Ge~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (291)
T 2qcs_B 110 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 161 (291)
T ss_dssp CGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888877776654
No 46
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.9e-15 Score=141.17 Aligned_cols=124 Identities=27% Similarity=0.343 Sum_probs=112.9
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
..+.++++|+|++++++.+..++..++.+.|++|++|+++||+++++|+|.+|.|+++. +|+ .+..+++|++||+
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe 79 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGE 79 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECH
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeeh
Confidence 45788999999999999999999999999999999999999999999999999999886 444 3689999999999
Q ss_pred hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
.+++.+.|+.++++|.++|+++.+++++|.+++..+|.....+...++.
T Consensus 80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 128 (246)
T 3of1_A 80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128 (246)
T ss_dssp HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999777666555544
No 47
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.57 E-value=3.7e-15 Score=140.18 Aligned_cols=118 Identities=12% Similarity=0.091 Sum_probs=111.0
Q ss_pred hhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhh
Q 007323 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI 467 (608)
Q Consensus 388 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~ 467 (608)
+++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++ .+.+|++.++..+++|++||
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG---- 75 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC---- 75 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence 4688999999999999999999999999999999999999999999999999997 77899999999999999999
Q ss_pred hcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 468 ~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
.++.++++|.++|+++.+++++|.++++.+|.+...++..+..
T Consensus 76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 118 (222)
T 1ft9_A 76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR 118 (222)
T ss_dssp ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999988877765
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.55 E-value=9.2e-15 Score=150.35 Aligned_cols=130 Identities=17% Similarity=0.315 Sum_probs=111.7
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccC------CceeeeEEeC
Q 007323 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN------GTEDYVSYLH 457 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~------g~~~~~~~l~ 457 (608)
.+..+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|+|.+|.|+++....+ |++..+..++
T Consensus 264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~ 343 (416)
T 3tnp_B 264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF 343 (416)
T ss_dssp SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence 4557888999999999999999999999999999999999999999999999999999987665 8888999999
Q ss_pred CCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 458 ~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
+|++|||.+++.+.++.++++|.++|+++.|++++|.+++..+|++..+.+..+.+
T Consensus 344 ~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~ 399 (416)
T 3tnp_B 344 RGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEE 399 (416)
T ss_dssp TTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC------
T ss_pred CCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876665555443
No 49
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.7e-14 Score=137.90 Aligned_cols=116 Identities=19% Similarity=0.374 Sum_probs=106.6
Q ss_pred hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
...+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|+|.+|.++++.... . .+..+++|++|||
T Consensus 123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~---~-~~~~l~~g~~fGe 198 (246)
T 3of1_A 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ---G-VINKLKDHDYFGE 198 (246)
T ss_dssp SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT---E-EEEEEETTCEECH
T ss_pred HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC---c-eEEEcCCCCcccH
Confidence 45667889999999999999999999999999999999999999999999999999987322 2 7889999999999
Q ss_pred hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcH
Q 007323 465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDG 504 (608)
Q Consensus 465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~ 504 (608)
.+++.+.|+.++++|.++|+++.+++++|.+++..+|+..
T Consensus 199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~ 238 (246)
T 3of1_A 199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL 238 (246)
T ss_dssp HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999998887654
No 50
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=148.24 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=116.5
Q ss_pred HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc-eeeeEEeCCCCee
Q 007323 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-EDYVSYLHPNSSF 462 (608)
Q Consensus 384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~-~~~~~~l~~G~~f 462 (608)
.+..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++....+|+ +..+..+++|++|
T Consensus 245 ~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~f 324 (381)
T 4din_B 245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYF 324 (381)
T ss_dssp HHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEE
T ss_pred HHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEe
Confidence 345678889999999999999999999999999999999999999999999999999998766555 5568999999999
Q ss_pred cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHH
Q 007323 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL 511 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l 511 (608)
||.+++.+.|+.++++|.++|+++.|++++|..++..+|++..+.++.+
T Consensus 325 Ge~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~ 373 (381)
T 4din_B 325 GEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY 373 (381)
T ss_dssp CTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred chHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877666554
No 51
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.55 E-value=1.4e-14 Score=138.89 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=114.3
Q ss_pred hhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchh
Q 007323 387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS 466 (608)
Q Consensus 387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~ 466 (608)
.++.+...+..+++++++.+...++.+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+++|++||+
T Consensus 9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-- 86 (250)
T 3e6c_C 9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-- 86 (250)
T ss_dssp CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence 345555566899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 467 ILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 467 ~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++.+. +.++++|.++|+++.++++.|.+++.++|.+...++..+..
T Consensus 87 ~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 132 (250)
T 3e6c_C 87 LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT 132 (250)
T ss_dssp CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 77777 99999999999999999999999999999999888777665
No 52
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.55 E-value=1.9e-14 Score=146.47 Aligned_cols=127 Identities=25% Similarity=0.362 Sum_probs=116.8
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.++++++|+.++++.+..++..++.+.|.+|++|+++||+++.+|+|.+|.|+++. +|+ .+..+++|++|
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~--~v~~l~~G~~f 200 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGE--WVTNISEGGSF 200 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTE--EEEEEESSCCB
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCe--EeeeCCCCCEE
Confidence 4456789999999999999999999999999999999999999999999999999999986 443 67889999999
Q ss_pred cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323 463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514 (608)
Q Consensus 463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~ 514 (608)
|+.+++.+.|+.++++|.++|+++.+++++|..++..+|.....++..++.+
T Consensus 201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~ 252 (381)
T 4din_B 201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK 252 (381)
T ss_dssp CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999888777766653
No 53
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.49 E-value=1.8e-13 Score=130.06 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=105.4
Q ss_pred cCCCHHHHHHHHH--HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc
Q 007323 396 KGCSSEFINQIVI--RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ 473 (608)
Q Consensus 396 ~~l~~~~l~~l~~--~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~ 473 (608)
++++++++.++.. .++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+ +|++||+.+++.+.+.
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~ 80 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS 80 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence 3678899999885 589999999999999999999999999999999998999999999999 9999999999988864
Q ss_pred --ccEEEEe-ceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 474 --PYTVQVC-ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 474 --~~~~~a~-~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
..++.|. ++|+++.+++++|.+++.++|.+...+++.+..
T Consensus 81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~ 123 (238)
T 2bgc_A 81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK 123 (238)
T ss_dssp SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 6788888 599999999999999999999999888877765
No 54
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.49 E-value=3.6e-15 Score=120.09 Aligned_cols=89 Identities=20% Similarity=0.077 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCccc
Q 007323 208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (608)
Q Consensus 208 ~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p 287 (608)
+++..++.+++++.+.++++++++...+++ ....|.+|+||+++|+||+||||+.|
T Consensus 7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~------------------------~~~~~~~a~y~~~~T~tTvGyGDi~P 62 (103)
T 2k1e_A 7 EAQKAEEELQKVLEEASKKAVEAERGAPGA------------------------ALISYPDAIWWSVETATTVGYGDRYP 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTC------------------------CCCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCc------------------------ccccHHHHHHHHHHHHhcccCCCCCC
Confidence 344455566667777888888887542211 11246699999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 288 ~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|..+++++++.+++|+.+++++++.+.+.+.+
T Consensus 63 ~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 63 VTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp CSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887765
No 55
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.49 E-value=3.1e-13 Score=110.51 Aligned_cols=55 Identities=27% Similarity=0.352 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
|.+|+||+++|+||+||||+.|.|..+++++++.+++|+.++++.++.+++.+..
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~ 104 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 104 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999998755
No 56
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.48 E-value=1.5e-13 Score=130.90 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=105.4
Q ss_pred HHHHHHHHHHce---eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc--c
Q 007323 400 SEFINQIVIRLH---EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--P 474 (608)
Q Consensus 400 ~~~l~~l~~~~~---~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~--~ 474 (608)
++.++.+..... .+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.+. .
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~ 109 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF 109 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence 667778887777 99999999999999999999999999999999999999999999999999999999998874 4
Q ss_pred cEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 475 ~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus 110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~ 148 (243)
T 3la7_A 110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS 148 (243)
T ss_dssp EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999888877755
No 57
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.48 E-value=1.7e-13 Score=144.21 Aligned_cols=125 Identities=18% Similarity=0.314 Sum_probs=108.3
Q ss_pred HHHhHhhhcccccccCCCHHHHHHHHHHcee-eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCC
Q 007323 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460 (608)
Q Consensus 382 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~ 460 (608)
.+...+.++++++|..++++.+..++..+.. +.|++|++|+++||.++.+|+|.+|.|+++. +|+ .++..+.+|+
T Consensus 332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~-~~~~~l~~G~ 407 (469)
T 1o7f_A 332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGD 407 (469)
T ss_dssp HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTT-EEEEEEETTC
T ss_pred HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCC-eeEEEecCCC
Confidence 3445678999999999999999999999985 5999999999999999999999999999987 333 3789999999
Q ss_pred eecchhhhcCCCcccEEEEec-eeeeEEechhhHHHHHHHhhhcHHHHHHH
Q 007323 461 SFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTN 510 (608)
Q Consensus 461 ~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~~~~ll~~~~~~~~~il~~ 510 (608)
+||+.+++.+.|+.++++|.+ +|+++.+++++|.+++..+|.....+.+.
T Consensus 408 ~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~ 458 (469)
T 1o7f_A 408 DFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH 458 (469)
T ss_dssp EECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred EEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence 999999999999999999998 79999999999999999999988776543
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.44 E-value=3.5e-13 Score=154.56 Aligned_cols=129 Identities=23% Similarity=0.297 Sum_probs=114.5
Q ss_pred HHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEecc--CCceeeeE
Q 007323 377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE--NGTEDYVS 454 (608)
Q Consensus 377 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~--~g~~~~~~ 454 (608)
|.+-..+...+.|+++++|+++++..+.+++.++..+.|++|++||++||+++++|+|++|.|.++..+. ++.+.++.
T Consensus 32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~ 111 (999)
T 4f7z_A 32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTIC 111 (999)
T ss_dssp CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEE
Confidence 4444445566789999999999999999999999999999999999999999999999999999987543 34566789
Q ss_pred EeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323 455 YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506 (608)
Q Consensus 455 ~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~ 506 (608)
.+.+|+.||| +++.+.||+++++|.++|+++.+++++|..++.++|+....
T Consensus 112 ~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~ 162 (999)
T 4f7z_A 112 TLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG 162 (999)
T ss_dssp EEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred EecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHH
Confidence 9999999999 78899999999999999999999999999999998865433
No 59
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.44 E-value=6.8e-13 Score=101.44 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~ 318 (608)
|.+|+||+++|+||+||||+.|.|..+|+++++.+++|+.++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999998764
No 60
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.43 E-value=6.3e-13 Score=105.21 Aligned_cols=54 Identities=31% Similarity=0.448 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
|.+|+||+++|+||+||||+.|.|..+|+++++.+++|+.++++.++.++..++
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 679999999999999999999999999999999999999999999999988765
No 61
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.41 E-value=5.2e-13 Score=145.02 Aligned_cols=130 Identities=19% Similarity=0.316 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHce-eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee
Q 007323 374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY 452 (608)
Q Consensus 374 ~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~-~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~ 452 (608)
+..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+++||+++++|+|.+|.|+++.. |+ .+
T Consensus 19 p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~i 94 (694)
T 3cf6_E 19 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GV 94 (694)
T ss_dssp GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-EE
T ss_pred hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-EE
Confidence 33454444555678899999999999999999999998 789999999999999999999999999999873 44 58
Q ss_pred eEEeCCCCeecchhhhcCCCcccEEEEec-eeeeEEechhhHHHHHHHhhhcHHHH
Q 007323 453 VSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKV 507 (608)
Q Consensus 453 ~~~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~~~~ll~~~~~~~~~i 507 (608)
+..+++|++||+.+++.+.++.++++|.+ +|+++.+++++|.++++++|.....+
T Consensus 95 l~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l 150 (694)
T 3cf6_E 95 VCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 150 (694)
T ss_dssp EEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred EEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 89999999999999999999999999999 59999999999999999999885543
No 62
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.36 E-value=2.1e-12 Score=118.54 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=86.1
Q ss_pred eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhh
Q 007323 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 413 ~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+.+|++||+ +++.+.++.++++|.++|+++.+++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~ 80 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA 80 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence 5799999999999999999999999999999889999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHhc
Q 007323 493 FTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 493 ~~~ll~~~~~~~~~il~~l~~ 513 (608)
|. |.+...++..+..
T Consensus 81 ~~------p~~~~~~~~~l~~ 95 (195)
T 3b02_A 81 MD------HEALHRVARNLAR 95 (195)
T ss_dssp CC------HHHHHHHHHHHHH
T ss_pred cC------HHHHHHHHHHHHH
Confidence 97 6666666665544
No 63
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.27 E-value=7.7e-12 Score=99.39 Aligned_cols=70 Identities=37% Similarity=0.505 Sum_probs=58.4
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+.+|+|.|+..++.+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 71 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 3567888888888888888888888888888888888888888888888888888888888888888874
No 64
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.26 E-value=7.9e-12 Score=111.37 Aligned_cols=78 Identities=33% Similarity=0.474 Sum_probs=71.8
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+..+.+|+|.|+..++.+.++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus 62 d~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp 139 (169)
T 4gpm_A 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTP 139 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred chhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 345566778899999999999999999999999999999999999999999999999999999999999999999985
No 65
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.25 E-value=2.9e-11 Score=138.65 Aligned_cols=114 Identities=20% Similarity=0.322 Sum_probs=101.2
Q ss_pred HHhHhhhcccccccCCCHHHHHHHHHHceee-eecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323 383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~-~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
+...+.+.++|.|++++...+++++..+... .+.+|++|+++||.++++|+|.+|.|+++. +++ ..+..+++||+
T Consensus 333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~-~~v~~L~~Gd~ 408 (999)
T 4f7z_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDD 408 (999)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTT-EEEEEEETTCE
T ss_pred HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCC-cceEEecCCCc
Confidence 3446778999999999999999999998855 557899999999999999999999999986 232 25788999999
Q ss_pred ecchhhhcCCCcccEEEEece-eeeEEechhhHHHHHHHh
Q 007323 462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIY 500 (608)
Q Consensus 462 fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~~~~~~ll~~~ 500 (608)
|||.+++.+.||.++++|.++ |+++.+++++|..++..-
T Consensus 409 FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp ECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred ccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 999999999999999999885 999999999999998763
No 66
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.25 E-value=1.1e-11 Score=114.32 Aligned_cols=99 Identities=21% Similarity=0.216 Sum_probs=85.6
Q ss_pred HHHceeeeecCCCeEEccCCcc--CeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceee
Q 007323 407 VIRLHEEFFLPGEVIMEKGNVV--DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCR 484 (608)
Q Consensus 407 ~~~~~~~~~~~g~~i~~~g~~~--~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~ 484 (608)
...++.+.|++|++|+++|++. +++|+|.+|.|+++..+++|++.++..+++|++||+ +++.+.++.++++|.++|+
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~ 80 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR 80 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence 4567889999999999999999 999999999999999889999999999999999999 8888999999999999999
Q ss_pred eEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323 485 LLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513 (608)
Q Consensus 485 l~~l~~~~~~~ll~~~~~~~~~il~~l~~ 513 (608)
++.+ .++|. |.+...++..+..
T Consensus 81 v~~i-~~~~~------p~~~~~~~~~l~~ 102 (202)
T 2zcw_A 81 LEPL-PENPD------PELLKDLAQHLSQ 102 (202)
T ss_dssp EEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred EEEE-hHhcC------HHHHHHHHHHHHH
Confidence 9999 88876 6666655555443
No 67
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.22 E-value=2.3e-11 Score=117.23 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47799999999999999999999999999999999999999999999999887764
No 68
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.18 E-value=1.2e-12 Score=115.41 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|+|||||||++|.|..+++++++++++|+++++++++.+++.+.+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999888775
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.18 E-value=1.1e-10 Score=113.35 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|||||||||+.|.+..+++++++.+++|++++|+++|.+.+.+.+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999999999999999999999999999999999999999998876
No 70
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.17 E-value=7.8e-11 Score=104.90 Aligned_cols=79 Identities=34% Similarity=0.468 Sum_probs=74.4
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+++..+..+.+|++.++..+..+.++.+++.|++++..|..|+||||.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus 28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~Tp 106 (169)
T 4gpm_A 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 106 (169)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 3456677788999999999999999999999999999999999999999999999999999999999999999999985
No 71
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.17 E-value=3.5e-11 Score=101.14 Aligned_cols=77 Identities=29% Similarity=0.296 Sum_probs=72.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.+++|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 33 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 109 (123)
T 3aaa_C 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA 109 (123)
T ss_dssp TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 45556677899999999999999999999999999999999999999999999999999999999999999999984
No 72
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.16 E-value=9.7e-11 Score=109.96 Aligned_cols=204 Identities=13% Similarity=0.147 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHhchheeecc--CCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-c
Q 007323 75 AWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-S 151 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~ 151 (608)
.++.++.++++.+.+...... .+. +....+..+|.++.++|++|+++|+.... . .++|+++ |
T Consensus 13 ~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~------------~--~~~y~~~~w 77 (229)
T 4dxw_A 13 IFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGEK------------Q--KADFFKSGW 77 (229)
T ss_dssp HHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHH
T ss_pred hHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------c--hhHHhcCCc
Confidence 467777777777777766543 111 11223667899999999999999987642 1 2789999 5
Q ss_pred chhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYL 230 (608)
Q Consensus 152 f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~ 230 (608)
-++|++.++|..+... ....++.+|++|++|++|+.++.+.++.... .......+..+.+.++++..++|.+-+.+
T Consensus 78 ni~D~~~v~~~~i~~~---~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~l 154 (229)
T 4dxw_A 78 NIFDTVIVAISLIPIP---NNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAIL 154 (229)
T ss_dssp HHHHHHHHHHTTCC-----------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999877766533221 1123345566667777777666666554332 22334456666666666666677765544
Q ss_pred hccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccC----ChhhHH-HHHHHHHHHHH
Q 007323 231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV----NLREMV-FIMIYVSFDMI 305 (608)
Q Consensus 231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~----~~~e~~-~~~~~~~~g~~ 305 (608)
.....+ +.++.+..|+||...++||.||+|+... +....+ +..++.+.+.+
T Consensus 155 f~~~~~------------------------~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i 210 (229)
T 4dxw_A 155 FGNDDP------------------------SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSIT 210 (229)
T ss_dssp TTTTSC------------------------TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred hccCCc------------------------ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 332111 1123456999999999999999996221 122223 33334444455
Q ss_pred HHHHHHHHHHHHHHc
Q 007323 306 LGAYLIGNMTALIVK 320 (608)
Q Consensus 306 ~~a~~i~~i~~~~~~ 320 (608)
+...+++.+.+-+++
T Consensus 211 ~lNlfiavi~~~f~~ 225 (229)
T 4dxw_A 211 ILNLVIAILVDVVIQ 225 (229)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666554443
No 73
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.14 E-value=8.4e-11 Score=96.61 Aligned_cols=77 Identities=30% Similarity=0.386 Sum_probs=69.5
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....+.+..+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999984
No 74
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.12 E-value=9.5e-11 Score=114.05 Aligned_cols=57 Identities=25% Similarity=0.345 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~ 321 (608)
.|.+|+||+++|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.+.
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999999999999999999999999999999999999999988763
No 75
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.10 E-value=7.2e-11 Score=114.02 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=73.5
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+..+.+|+|.|+..++.+.++.|++.|+++|..+..|+||||+|+..|+.++|++|+++|||+|.+|.+|+|+
T Consensus 144 ~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp 221 (269)
T 4b93_B 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA 221 (269)
T ss_dssp CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCS
T ss_pred CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 345566778899999999999999999999999999999999999999999999999999999999999999999996
No 76
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.08 E-value=3.4e-10 Score=108.35 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.|.+|+||+++|+|||||||++|.|..+|+++++++++|+.+++++++.++..+.+
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~ 170 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS 170 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999987754
No 77
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.07 E-value=1.7e-10 Score=98.89 Aligned_cols=77 Identities=27% Similarity=0.273 Sum_probs=72.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 36 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 112 (137)
T 3c5r_A 36 PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112 (137)
T ss_dssp SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999985
No 78
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.07 E-value=2e-10 Score=98.42 Aligned_cols=78 Identities=32% Similarity=0.374 Sum_probs=72.5
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp 116 (136)
T 2jab_A 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116 (136)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCH
Confidence 345556678899999999999999999999999999999999999999999999999999999999999999999984
No 79
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.07 E-value=3.3e-10 Score=102.51 Aligned_cols=79 Identities=23% Similarity=0.231 Sum_probs=73.3
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..++..+..+.+|+|.|+..++.+.++.|+++|++++..| ..|+||||+|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 67 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 146 (183)
T 3deo_A 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146 (183)
T ss_dssp SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCH
Confidence 3455667778899999999999999999999999999998 889999999999999999999999999999999999984
No 80
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.05 E-value=1.1e-09 Score=106.22 Aligned_cols=98 Identities=18% Similarity=0.311 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCccc
Q 007323 210 VKLIAVELYCSHIAACIFYYLATTLPP--EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA 287 (608)
Q Consensus 210 ~~l~~~~~~~~h~~ac~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p 287 (608)
+.+++.+++...++|.+||+++...++ ...+..|..... ....+..|+||+++|+|||||||+.|
T Consensus 47 lif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~-------------~~~sf~~af~fSv~T~TTvGYGd~~p 113 (340)
T 3sya_A 47 LIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVT-------------NLNGFVSAFLFSIETETTIGYGYRVI 113 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBS-------------CCCSTTHHHHHHHHHHSCCCCSSSCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhc-------------cccCHHHHHhhhheeeeeecCCCccC
Confidence 334444555666789999988742211 111122322111 01234599999999999999999999
Q ss_pred C--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 288 V--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 288 ~--~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
. +..+++++++.+++|+++.|+++|.+.+-+++
T Consensus 114 ~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 114 TDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7 68899999999999999999999999988876
No 81
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.05 E-value=3.8e-10 Score=94.70 Aligned_cols=72 Identities=36% Similarity=0.465 Sum_probs=67.5
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....+++|.|+..++.+.++.+++.|++++..|..|+||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tp 76 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence 445689999999999999999999999999999999999999999999999999999999999999999984
No 82
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.04 E-value=3.6e-10 Score=109.55 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=71.9
Q ss_pred ccchhhhhhhhHhHHHhc---CCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+..+.+|+|.|+.. +..+.++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus 162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp 241 (278)
T 1dcq_A 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP 241 (278)
T ss_dssp CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCH
Confidence 445566788999999999 89999999999999999999999999999999999999999999999999999999985
No 83
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.03 E-value=6.4e-10 Score=105.73 Aligned_cols=79 Identities=23% Similarity=0.231 Sum_probs=73.6
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..++..+..+.+|+|.|+..++.+.++.|+++|++++..+ ..|+||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~ 147 (244)
T 3ui2_A 68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147 (244)
T ss_dssp CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 3556677788999999999999999999999999999998 789999999999999999999999999999999999984
No 84
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.02 E-value=5.4e-10 Score=99.18 Aligned_cols=77 Identities=27% Similarity=0.272 Sum_probs=71.1
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 68 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 144 (165)
T 3twr_A 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP 144 (165)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCh
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999986
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.02 E-value=1.9e-10 Score=98.45 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=70.4
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCC-CchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+. ++.+.++.|+++|++++..|.. |.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 38 ~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 114 (136)
T 1d9s_A 38 PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114 (136)
T ss_dssp TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCH
T ss_pred cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 44556677899999999 9999999999999999999999 9999999999999999999999999999999999984
No 86
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.01 E-value=4.4e-10 Score=98.37 Aligned_cols=77 Identities=23% Similarity=0.278 Sum_probs=71.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 60 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 136 (153)
T 1awc_B 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA 136 (153)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 44455667899999999999999999999999999999999999999999999999999999999999999999984
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.00 E-value=4.8e-10 Score=101.52 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=49.6
Q ss_pred hhhhhhHhHHHhcCCH----HHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc------HHHHHHHHhcCCCCCCcCCCCC
Q 007323 537 AELALKVNSAAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGY------EEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~----~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~------~~~v~~Ll~~ga~~~~~~~~g~ 606 (608)
..+.+|+|.|+..++. +++++|+++|+++|..|..|+||||+|+..++ .+++++|+++|||+|++|..|+
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ 115 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK 115 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence 4466777777776654 36777777777777777777777777776665 4667777777777777777776
No 88
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.00 E-value=3.2e-10 Score=93.90 Aligned_cols=79 Identities=28% Similarity=0.357 Sum_probs=70.7
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..++..+....+++|.|+..+..+.++.|++.|++++..|..|.||||.|+..++.+++++|+++||++|.++..|.|+
T Consensus 33 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 3455667778899999999999999999999999999999999999999999999999999999999999999998874
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=98.98 E-value=9.7e-10 Score=94.03 Aligned_cols=73 Identities=32% Similarity=0.374 Sum_probs=68.8
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.....+++|.|+..++.+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 83 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP 83 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence 3556789999999999999999999999999999999999999999999999999999999999999999984
No 90
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.98 E-value=2e-10 Score=95.09 Aligned_cols=74 Identities=32% Similarity=0.479 Sum_probs=69.8
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|+|+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP 78 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999985
No 91
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=98.97 E-value=9.1e-10 Score=99.19 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=70.5
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 141 (179)
T 3f6q_A 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141 (179)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCG
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCc
Confidence 344555667889999999999999999999999999999999999999999999999999999999999999999985
No 92
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=98.97 E-value=1.3e-09 Score=96.56 Aligned_cols=78 Identities=26% Similarity=0.278 Sum_probs=72.2
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+..+....+++|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 111 (165)
T 3twr_A 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP 111 (165)
T ss_dssp TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCH
Confidence 344555667799999999999999999999999999999999999999999999999999999999999999999984
No 93
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=98.97 E-value=1.1e-09 Score=98.55 Aligned_cols=78 Identities=28% Similarity=0.264 Sum_probs=72.6
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~ 108 (179)
T 3f6q_A 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108 (179)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 345566677899999999999999999999999999999999999999999999999999999999999999999984
No 94
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.96 E-value=1.4e-09 Score=95.36 Aligned_cols=77 Identities=27% Similarity=0.354 Sum_probs=59.3
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++ ++++.+|.+|.|+
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~ 136 (156)
T 1bd8_A 60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP 136 (156)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH
Confidence 3445556667788888888888888888888888887777788888888888888888888877 7888888777774
No 95
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=98.96 E-value=4.3e-10 Score=96.24 Aligned_cols=76 Identities=24% Similarity=0.382 Sum_probs=70.8
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCC-CCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS-IMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-g~T~ 608 (608)
++..+....+++|.|+..++.+.++.|++.|++++..|..|+||||.|+. |+.+++++|+++|++++.+|.. |+|+
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 81 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP 81 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence 44556677899999999999999999999999999999999999999999 9999999999999999999999 8884
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=98.95 E-value=7.5e-10 Score=94.84 Aligned_cols=74 Identities=27% Similarity=0.383 Sum_probs=69.8
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+.+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 79 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999884
No 97
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=98.95 E-value=5.6e-10 Score=98.11 Aligned_cols=78 Identities=24% Similarity=0.223 Sum_probs=58.6
Q ss_pred cccchhhhhhh-hHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELAL-KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~-~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+ |+|.|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|.
T Consensus 69 ~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 147 (156)
T 1bi7_B 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA 147 (156)
T ss_dssp CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred CCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence 34455566777 9999999999999999999999999999999999999999999999999999999999999988773
No 98
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.94 E-value=1.5e-09 Score=102.77 Aligned_cols=77 Identities=27% Similarity=0.310 Sum_probs=71.5
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC-C
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM-Q 607 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~-T 607 (608)
.++..+....+|+|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..|. |
T Consensus 62 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t 139 (239)
T 1ycs_B 62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139 (239)
T ss_dssp SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence 4555667788999999999999999999999999999999999999999999999999999999999999998776 6
No 99
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=98.93 E-value=1.6e-09 Score=85.75 Aligned_cols=67 Identities=34% Similarity=0.520 Sum_probs=62.4
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 597 (608)
.++..+....+|+|.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++||+
T Consensus 27 ~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 3455667788999999999999999999999999999999999999999999999999999999986
No 100
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=98.92 E-value=6.5e-10 Score=97.68 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=69.9
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCch-HHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRS-PLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~t-pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+|+|.|+ .++.+.+++|+++|++++..|..|.| |||+|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 37 ~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 114 (156)
T 1bi7_B 37 NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114 (156)
T ss_dssp CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCH
T ss_pred CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 34445566788999875 89999999999999999999999999 9999999999999999999999999999999984
No 101
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.92 E-value=1.5e-09 Score=96.97 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=67.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+++|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 138 (172)
T 3v30_A 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP 138 (172)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence 34445566788999999999999999999999999999999999999999999999999999999999999998884
No 102
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=98.92 E-value=2.1e-09 Score=93.92 Aligned_cols=73 Identities=32% Similarity=0.393 Sum_probs=69.4
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+....+++|.|+..++.+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 103 (153)
T 1awc_B 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103 (153)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4557799999999999999999999999999999999999999999999999999999999999999999984
No 103
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=102.66 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhccccCCcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLREM------VFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~------~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
|++|+||+++|+|||||||+.|.+..++ +++++++++|+.+++++++.+++.+..
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999998886 599999999999999999999887765
No 104
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.91 E-value=2e-09 Score=101.07 Aligned_cols=78 Identities=28% Similarity=0.260 Sum_probs=71.6
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~ 608 (608)
.++..+..+.+|+|.|+..++.+.+++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++..+ .+|+|+
T Consensus 46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tp 124 (229)
T 2vge_A 46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA 124 (229)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCT
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCH
Confidence 344566778899999999999999999999999999999999999999999999999999999999999997 699985
No 105
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.91 E-value=2.1e-09 Score=90.24 Aligned_cols=77 Identities=34% Similarity=0.491 Sum_probs=70.0
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 28 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 104 (126)
T 1n0r_A 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104 (126)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCH
Confidence 34445567889999999999999999999999999999999999999999999999999999999999999999884
No 106
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.91 E-value=2e-09 Score=95.95 Aligned_cols=77 Identities=32% Similarity=0.443 Sum_probs=68.9
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+++|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 73 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 149 (169)
T 2y1l_E 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 44455667889999999999999999999999999999999999999999999999999999999999999999874
No 107
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=98.91 E-value=3.7e-09 Score=94.18 Aligned_cols=78 Identities=32% Similarity=0.413 Sum_probs=72.3
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+++|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 116 (169)
T 2y1l_E 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 344556677899999999999999999999999999999999999999999999999999999999999999999884
No 108
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.90 E-value=1.2e-09 Score=102.13 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=72.6
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+..+.+++|.|+..++.+.++.|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 176 (222)
T 3ehr_A 98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176 (222)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCH
Confidence 3455567788999999999999999999998 99999999999999999999999999999999999999999999984
No 109
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.90 E-value=2e-09 Score=95.71 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=70.3
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 138 (167)
T 3v31_A 62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 138 (167)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34445667789999999999999999999999999999999999999999999999999999999999999999884
No 110
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=98.89 E-value=2e-09 Score=94.40 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.2
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+..+....+|+|. +..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (156)
T 1bd8_A 28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104 (156)
T ss_dssp CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 445556668899999 99999999999999999999999999999999999999999999999999999999999984
No 111
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.89 E-value=4.4e-09 Score=102.05 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcc
Q 007323 210 VKLIAVELYCSHIAACIFYYLATTLPP---EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH 286 (608)
Q Consensus 210 ~~l~~~~~~~~h~~ac~~~~~~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~ 286 (608)
+.+++.+++...++|.+||+++...++ .....+|..... ....+..|+||++.|+||+||||+.
T Consensus 49 l~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~-------------~~~sf~~af~fSv~T~TTvGYGd~~ 115 (343)
T 3spc_A 49 LLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVL-------------QVNGFVAAFLFSIETQTTIGYGFRC 115 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEE-------------TCCSHHHHHHHHHHHHSCCCCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccc-------------ccCCHHHHhheeeeeeEeecCCCcc
Confidence 334445566667788888887543221 111112322110 1134679999999999999999998
Q ss_pred cC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 287 AV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 287 p~--~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
|. +..+++++.+.+++|+++.|+++|.+.+-+++
T Consensus 116 p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr 151 (343)
T 3spc_A 116 VTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR 151 (343)
T ss_dssp ECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 64 89999999999999999999999999998876
No 112
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=98.89 E-value=3e-09 Score=95.01 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=71.8
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 105 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP 105 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 44455677899999999999999999999999999999999999999999999999999999999999999999984
No 113
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.89 E-value=2e-09 Score=98.15 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=70.5
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 94 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 170 (192)
T 2rfm_A 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170 (192)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 44455667899999999999999999999999999999999999999999999999999999999999999999884
No 114
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.89 E-value=5.5e-09 Score=112.09 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCc
Q 007323 207 SRIVKLIAVELYCSHIAACIFYYLAT-TLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 285 (608)
Q Consensus 207 ~~~~~l~~~~~~~~h~~ac~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi 285 (608)
.++...++.+++++++++|+++++.. .++. .| .|++|+||+++|+||+||||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~---------------------~~~~~~y~~~~t~tTvGygd~ 71 (565)
T 4gx0_A 18 KVLLLYCAFLLVMLLAYASIFRYLMWHLEGR-----AY---------------------SFMAGIYWTITVMTTLGFGDI 71 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CC---------------------CHHHHHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CC---------------------chhhhhheeeeeeeeecCCCc
Confidence 34556666666777777777766542 1110 11 256999999999999999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 007323 286 HAVNLREMVFIMIYVSFDMILGAYLIGN-MTAL 317 (608)
Q Consensus 286 ~p~~~~e~~~~~~~~~~g~~~~a~~i~~-i~~~ 317 (608)
+|.|..+++++++++++|+.++++.++. +.+.
T Consensus 72 ~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 104 (565)
T 4gx0_A 72 TFESDAGYLFASIVTVSGVIFLDIILPFGFVSM 104 (565)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 4443
No 115
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.88 E-value=2e-09 Score=104.38 Aligned_cols=75 Identities=27% Similarity=0.303 Sum_probs=70.5
Q ss_pred chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCCCCCCC
Q 007323 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIMQI 608 (608)
Q Consensus 534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~T~ 608 (608)
..+..+.+|+|.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|++ +|+|++.+|..|+|+
T Consensus 178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~Tp 253 (276)
T 4hbd_A 178 KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253 (276)
T ss_dssp CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCH
Confidence 345567899999999999999999999999999999999999999999999999999999 899999999999985
No 116
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=98.88 E-value=3.9e-09 Score=93.77 Aligned_cols=77 Identities=32% Similarity=0.388 Sum_probs=72.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 105 (167)
T 3v31_A 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105 (167)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCH
Confidence 45566677899999999999999999999999999999999999999999999999999999999999999999984
No 117
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.87 E-value=2.8e-09 Score=94.14 Aligned_cols=77 Identities=26% Similarity=0.313 Sum_probs=68.1
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC-CCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~T~ 608 (608)
.+..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++ ++.+|..|+|+
T Consensus 63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~ 140 (162)
T 1ihb_A 63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140 (162)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcH
Confidence 344556677899999999999999999999999999999999999999999999999999999998 58999999884
No 118
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.87 E-value=2.3e-09 Score=104.09 Aligned_cols=71 Identities=27% Similarity=0.262 Sum_probs=63.3
Q ss_pred hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+.+|+|.|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|+++||+++.+|.+|.|+
T Consensus 191 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 261 (282)
T 1oy3_D 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP 261 (282)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999985
No 119
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.87 E-value=5e-09 Score=105.25 Aligned_cols=72 Identities=25% Similarity=0.365 Sum_probs=69.3
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....+++|.|+..++.+.+++|+++|++++..|..|+||||+|+..|+.+++++|+++||+++.+|.+|+|+
T Consensus 233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~Tp 304 (368)
T 3jue_A 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP 304 (368)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCH
Confidence 667899999999999999999999999999999999999999999999999999999999999999999984
No 120
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.86 E-value=4e-09 Score=99.06 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=70.4
Q ss_pred chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+....++++.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp 90 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 345567789999999999999999999999999999999999999999999999999999999999999999984
No 121
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=98.85 E-value=2.7e-09 Score=94.22 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=71.2
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+++|.|+. ++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus 30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 106 (162)
T 1ihb_A 30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106 (162)
T ss_dssp CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 345556677899999988 99999999999999999999999999999999999999999999999999999999984
No 122
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.85 E-value=3.3e-09 Score=101.37 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=72.1
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+..+.+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 150 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 226 (253)
T 1yyh_A 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226 (253)
T ss_dssp TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999984
No 123
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=98.85 E-value=3.6e-09 Score=96.43 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=72.4
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 137 (192)
T 2rfm_A 60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137 (192)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 344556678899999999999999999999999999999999999999999999999999999999999999999984
No 124
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.84 E-value=4.1e-09 Score=99.55 Aligned_cols=76 Identities=26% Similarity=0.313 Sum_probs=68.0
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+..+....+|+|.|+..++.+.+++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 187 (236)
T 1ikn_D 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187 (236)
T ss_dssp GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCG
T ss_pred hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCH
Confidence 44556678899999999999999999999999999887 89999999999999999999999999999999999885
No 125
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=98.84 E-value=1.1e-09 Score=99.06 Aligned_cols=80 Identities=10% Similarity=-0.016 Sum_probs=70.4
Q ss_pred cccccchhhhhhhhHhHHHhcCC------HHHHHHHHHcCCCCCCCCCCCc-hHHhHHHhcC-----cHHHHHHHHh-cC
Q 007323 529 TFHISKHEAELALKVNSAAYHGD------LYQLEGLIRAGADPNRTDYDGR-SPLHLAASRG-----YEEIMTFLIQ-KG 595 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~~~------~~~~~~Ll~~ga~~~~~d~~g~-tpL~~A~~~~-----~~~~v~~Ll~-~g 595 (608)
...++..+..+.+|+|.|+..+. .+.++.|+++|+++|..|..|. ||||.|+..+ +.+++++|++ +|
T Consensus 65 Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g 144 (186)
T 3t8k_A 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG 144 (186)
T ss_dssp TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC
Confidence 45566777888999999998876 5789999999999999999999 9999999844 4579999999 99
Q ss_pred CCCCCcCCCCCCC
Q 007323 596 VDINLKGNSIMQI 608 (608)
Q Consensus 596 a~~~~~~~~g~T~ 608 (608)
||+|.+|..|+|+
T Consensus 145 ad~~~~d~~G~Tp 157 (186)
T 3t8k_A 145 LQLLIKDKWGLTA 157 (186)
T ss_dssp CCTTCCCTTSCCH
T ss_pred CCCcccCCCCCCH
Confidence 9999999999985
No 126
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.84 E-value=3e-09 Score=104.26 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=68.5
Q ss_pred hhhhhhhhHhHHHhc---CCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+....+++|.|+.. +..+.+++|++.|++++..|..|+||||.|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus 186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp 262 (301)
T 2b0o_E 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 262 (301)
T ss_dssp SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCH
T ss_pred cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 355678899999987 88999999999999999999999999999999999999999999999999999999984
No 127
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=98.83 E-value=4.8e-09 Score=94.78 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=68.1
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~ 608 (608)
+....+|+|.|+..++.+.++.+++ |++++..|..|+||||+|+..|+.+++++|+++|+++|.+| ..|+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence 4567899999999999999999999 99999999999999999999999999999999999999998 889984
No 128
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.83 E-value=4.5e-09 Score=103.16 Aligned_cols=74 Identities=32% Similarity=0.343 Sum_probs=70.3
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+....+|+|.|+..++.+.++.|++.|++++..|..|.||||+|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus 195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 268 (299)
T 1s70_B 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268 (299)
T ss_dssp CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 44567799999999999999999999999999999999999999999999999999999999999999999996
No 129
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.83 E-value=5.9e-09 Score=99.79 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=69.6
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCC-------------CchHHhHHHhcCcHHHHHHHHh---cCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-------------GRSPLHLAASRGYEEIMTFLIQ---KGVDI 598 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~-------------g~tpL~~A~~~~~~~~v~~Ll~---~ga~~ 598 (608)
.+..+.+|+|.|+..++.+.++.|+++|++++..+.. |.||||.|+..|+.+++++|++ +|+++
T Consensus 86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~ 165 (256)
T 2etb_A 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL 165 (256)
T ss_dssp TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence 4456889999999999999999999999999999876 9999999999999999999999 99999
Q ss_pred CCcCCCCCCC
Q 007323 599 NLKGNSIMQI 608 (608)
Q Consensus 599 ~~~~~~g~T~ 608 (608)
|.+|.+|+|+
T Consensus 166 n~~d~~g~Tp 175 (256)
T 2etb_A 166 EATDSLGNTV 175 (256)
T ss_dssp TCCCTTSCCH
T ss_pred CccCCCCCCH
Confidence 9999999985
No 130
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.83 E-value=5.5e-09 Score=98.32 Aligned_cols=55 Identities=15% Similarity=0.370 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
.|.+|+||+++|+|||||||++|.|..+|+++++.+++|+.++++.++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999999999999999999999998876543
No 131
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.83 E-value=8.2e-09 Score=97.17 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhccccCCcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 266 YITSMYASVVTMTTVGYGDVHAVNLR-------EMVFIMIYVSFDMILGAYLIGNMTALIV 319 (608)
Q Consensus 266 Y~~s~y~~~~t~ttvGygdi~p~~~~-------e~~~~~~~~~~g~~~~a~~i~~i~~~~~ 319 (608)
|++|+||+++|+|||||||+.|.+.. +++++++++++|+.+++++++.+.++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66999999999999999999999885 5999999999999999999999987654
No 132
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.83 E-value=5.1e-09 Score=99.09 Aligned_cols=72 Identities=26% Similarity=0.305 Sum_probs=69.1
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 148 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 219 (241)
T 1k1a_A 148 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219 (241)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCH
Confidence 456789999999999999999999999999999999999999999999999999999999999999999986
No 133
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.82 E-value=5.2e-09 Score=101.63 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=72.0
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCC-CchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+|+|.|+..++.+.++.|+++|++++..+.. |.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 228 (282)
T 1oy3_D 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP 228 (282)
T ss_dssp GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence 45556677889999999999999999999999999999854 9999999999999999999999999999999999985
No 134
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.82 E-value=4.6e-09 Score=100.77 Aligned_cols=77 Identities=22% Similarity=0.211 Sum_probs=70.9
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC--------------CCCchHHhHHHhcCcHHHHHHHHh---c
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFLIQ---K 594 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d--------------~~g~tpL~~A~~~~~~~~v~~Ll~---~ 594 (608)
.+..+....+|+|.|+..++.+.++.|+++|++++..+ ..|.||||.|+..|+.+++++|++ +
T Consensus 86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 165 (260)
T 3jxi_A 86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165 (260)
T ss_dssp BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 34445577899999999999999999999999999998 689999999999999999999999 9
Q ss_pred CCCCCCcCCCCCCC
Q 007323 595 GVDINLKGNSIMQI 608 (608)
Q Consensus 595 ga~~~~~~~~g~T~ 608 (608)
|+++|.+|..|+|+
T Consensus 166 ga~~~~~d~~g~Tp 179 (260)
T 3jxi_A 166 QADLRRQDSRGNTV 179 (260)
T ss_dssp CCCTTCCCTTSCCH
T ss_pred CCCCcccCCCCCcH
Confidence 99999999999985
No 135
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.82 E-value=3.5e-09 Score=111.80 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=67.3
Q ss_pred hhhhhhhHhHHHh---cCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 536 EAELALKVNSAAY---HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~---~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+..+.+|||.|+. .++.+.++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|||+|++|.+|+|+
T Consensus 168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 243 (497)
T 3lvq_E 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243 (497)
T ss_dssp CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCH
T ss_pred ccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 5667899999954 899999999999999999999999999999999999999999999999999999999984
No 136
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.82 E-value=4.9e-09 Score=98.30 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=72.1
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHH-hcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~T~ 608 (608)
.++..+..+.+|+|.|+..++.+.++.|++.| ++++..|..|+||||.|+..|+.+++++|+ ++|+|++.+|.+|+|+
T Consensus 132 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~ 211 (228)
T 2dzn_A 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211 (228)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBG
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcH
Confidence 34455667789999999999999999999999 999999999999999999999999999999 8999999999999985
No 137
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.81 E-value=5.8e-09 Score=98.06 Aligned_cols=76 Identities=26% Similarity=0.325 Sum_probs=71.1
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 133 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 208 (231)
T 3aji_A 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP 208 (231)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 3445567899999999999999999999999999999999999999999999999999999999999999999984
No 138
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.81 E-value=5.5e-09 Score=104.90 Aligned_cols=77 Identities=22% Similarity=0.230 Sum_probs=72.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|+|++.+|..|+|+
T Consensus 240 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ta 316 (351)
T 3utm_A 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316 (351)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCh
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999984
No 139
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.80 E-value=4.5e-09 Score=99.51 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=67.6
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp 106 (239)
T 1ycs_B 35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106 (239)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence 345789999999999999999999999999999999999999999999999999999999999999999984
No 140
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.79 E-value=6.8e-09 Score=99.73 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=70.1
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|++.|++++. +..|.||||.|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus 127 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp 202 (261)
T 2xai_A 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRP 202 (261)
T ss_dssp TTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCh
Confidence 444556677999999999999999999999999996 8889999999999999999999999999999999999985
No 141
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.79 E-value=1.1e-08 Score=102.19 Aligned_cols=73 Identities=25% Similarity=0.318 Sum_probs=66.6
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
.+.+..++|+.|+..++.+.++.|+++|+++|..+. .|+||||+|+..|+.++|++|+++||+++.++..|.|
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT 94 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc
Confidence 445678899999999999999999999999998875 5999999999999999999999999999998887765
No 142
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.78 E-value=8.4e-09 Score=96.34 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=70.1
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 194 (223)
T 2f8y_A 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 194 (223)
T ss_dssp TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCH
Confidence 44455667899999999999999999999999999999999999999999999999999999999999999999884
No 143
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.78 E-value=9.4e-09 Score=96.69 Aligned_cols=76 Identities=25% Similarity=0.324 Sum_probs=68.6
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-------------CCchHHhHHHhcCcHHHHHHHHhcCCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-------------DGRSPLHLAASRGYEEIMTFLIQKGVDIN 599 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 599 (608)
+..+....+|+|.|+..++.+.++.|+++|++++..+. .|.||||.|+..|+.+++++|+++|+|+|
T Consensus 69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 148 (232)
T 2rfa_A 69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148 (232)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 44556778999999999999999999999999988765 79999999999999999999999999999
Q ss_pred CcCCCCCCC
Q 007323 600 LKGNSIMQI 608 (608)
Q Consensus 600 ~~~~~g~T~ 608 (608)
.+|..|+|+
T Consensus 149 ~~d~~g~t~ 157 (232)
T 2rfa_A 149 AQDSLGNTV 157 (232)
T ss_dssp CCCTTSCCH
T ss_pred CCCCCCCCH
Confidence 999999984
No 144
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.78 E-value=7.2e-09 Score=97.81 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=71.5
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..+..+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus 137 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 213 (237)
T 3b7b_A 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP 213 (237)
T ss_dssp TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCH
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999999984
No 145
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.78 E-value=1.2e-08 Score=95.73 Aligned_cols=78 Identities=22% Similarity=0.141 Sum_probs=72.3
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC-CCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~T~ 608 (608)
..+..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++| ++++.+|..|+|+
T Consensus 99 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~ 177 (228)
T 2dzn_A 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177 (228)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCH
T ss_pred ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCH
Confidence 34555667789999999999999999999999999999999999999999999999999999999 9999999999984
No 146
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=98.78 E-value=8.2e-09 Score=86.56 Aligned_cols=70 Identities=37% Similarity=0.505 Sum_probs=66.7
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+.+++|.|+..++.+.++.|++.|++++..+..|.||||.|+..++.+++++|+++|++++.+|..|+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 71 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999884
No 147
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=98.78 E-value=1.1e-08 Score=87.14 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhchheeeccC--CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccch
Q 007323 76 WTKFILIWAVYSSIFTPVEFGFFRG--LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFI 153 (608)
Q Consensus 76 w~~~~~~~~~~~~~~~p~~~~f~~~--~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f~ 153 (608)
|+.++.++++.+++++-+....... ....+..+|.++.++|++|+++|+..+.. .++|+++ -+
T Consensus 23 f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~--------------k~~f~~~-~i 87 (147)
T 2kyh_A 23 VELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVKK-TL 87 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHH-ST
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--------------HHHHHHH-HH
Confidence 6666666666666555554332211 12246789999999999999999887632 2789998 69
Q ss_pred hHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 007323 154 IDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFF 193 (608)
Q Consensus 154 iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~ 193 (608)
+|+++++|++..+... ..++++|++|++|++|+.+..
T Consensus 88 iDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~ 124 (147)
T 2kyh_A 88 YEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRIL 124 (147)
T ss_dssp TTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998665431 224444444444444444433
No 148
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=98.78 E-value=3.3e-09 Score=89.24 Aligned_cols=109 Identities=17% Similarity=0.196 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHhchheeec--cCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc
Q 007323 75 AWTKFILIWAVYSSIFTPVEFGFF--RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF 152 (608)
Q Consensus 75 ~w~~~~~~~~~~~~~~~p~~~~f~--~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f 152 (608)
.++.+++++++.+.+..-+..... ......+..+|.++.++|++|+++|+.++.. .++|++ |-
T Consensus 7 ~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~--------------~~~y~~-~n 71 (132)
T 1ors_C 7 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVK-KT 71 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------------TTTTTT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHH-HH
Confidence 456666666666655555433211 1112346789999999999999999887521 178999 77
Q ss_pred hhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323 153 IIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEK 198 (608)
Q Consensus 153 ~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~ 198 (608)
++|+++++|++......+....++.+|++|++|++|+.++...++.
T Consensus 72 iiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~~ 117 (132)
T 1ors_C 72 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSK 117 (132)
T ss_dssp GGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999866544111223455666666777777666665544
No 149
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.77 E-value=1e-08 Score=99.22 Aligned_cols=75 Identities=23% Similarity=0.237 Sum_probs=70.2
Q ss_pred chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC--------------CCchHHhHHHhcCcHHHHHHHHh---cCC
Q 007323 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY--------------DGRSPLHLAASRGYEEIMTFLIQ---KGV 596 (608)
Q Consensus 534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~--------------~g~tpL~~A~~~~~~~~v~~Ll~---~ga 596 (608)
..+....+|+|.|+..++.+.++.|+++|++++..+. .|.||||.|+..|+.+++++|++ +|+
T Consensus 96 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 175 (273)
T 2pnn_A 96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175 (273)
T ss_dssp STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred cccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence 3456788999999999999999999999999999987 79999999999999999999999 999
Q ss_pred CCCCcCCCCCCC
Q 007323 597 DINLKGNSIMQI 608 (608)
Q Consensus 597 ~~~~~~~~g~T~ 608 (608)
++|.+|.+|+|+
T Consensus 176 d~~~~d~~g~tp 187 (273)
T 2pnn_A 176 DISARDSVGNTV 187 (273)
T ss_dssp CTTCCCTTSCCH
T ss_pred CceeeCCCCCcH
Confidence 999999999984
No 150
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.76 E-value=5.2e-09 Score=97.82 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=68.0
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-CCCCCCcCCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQI 608 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~T~ 608 (608)
....+++|.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++ |+++|.+|..|+|+
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tp 143 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA 143 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCH
T ss_pred cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCH
Confidence 3456799999999999999999999999999999999999999999999999999998 99999999999984
No 151
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.76 E-value=9e-09 Score=100.94 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=71.5
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|.+|.|+
T Consensus 66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 142 (299)
T 1s70_B 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142 (299)
T ss_dssp TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence 44556667899999999999999999999999999999999999999999999999999999999999999999884
No 152
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=98.76 E-value=5.9e-09 Score=100.49 Aligned_cols=77 Identities=29% Similarity=0.461 Sum_probs=71.3
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+|++.++..+..+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+|+
T Consensus 112 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~ 188 (269)
T 4b93_B 112 AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188 (269)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBH
T ss_pred cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcH
Confidence 34445567789999999999999999999999999999999999999999999999999999999999999999984
No 153
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.76 E-value=8.6e-09 Score=97.86 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=67.7
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~ 608 (608)
+....+++|.|+..++.+.++.|+. |++++..|..|+||||.|+..|+.+++++|+++|+++|.+| ..|+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence 3567899999999999999999999 99999999999999999999999999999999999999998 789884
No 154
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.75 E-value=1.5e-08 Score=101.76 Aligned_cols=81 Identities=22% Similarity=0.255 Sum_probs=68.1
Q ss_pred ccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 528 ~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
.....+..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..|..|+|
T Consensus 47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t 126 (351)
T 3utm_A 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126 (351)
T ss_dssp TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence 34445556677788899999889999999999999888888888899999999999999999999889999888888887
Q ss_pred C
Q 007323 608 I 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 127 ~ 127 (351)
T 3utm_A 127 P 127 (351)
T ss_dssp H
T ss_pred H
Confidence 4
No 155
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=98.12 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=66.4
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
..++..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.. .+|.|
T Consensus 27 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t 103 (261)
T 2xai_A 27 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLAS 103 (261)
T ss_dssp CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTCC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCC
Confidence 345666777889999999999999999999999999999999999999999999999999999999998854 44766
No 156
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.74 E-value=1.6e-08 Score=92.77 Aligned_cols=77 Identities=23% Similarity=0.263 Sum_probs=70.7
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCc-----HHHHHHHHhcCCCCCCcCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGY-----EEIMTFLIQKGVDINLKGNSI 605 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~-----~~~v~~Ll~~ga~~~~~~~~g 605 (608)
.+..+....+|+|.|+..++.+.++.|++.| ++++..|..|.||||.|+..++ .+++++|+++|++++.+|..|
T Consensus 99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g 178 (201)
T 3hra_A 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178 (201)
T ss_dssp TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTS
T ss_pred cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCC
Confidence 4455566788999999999999999999999 9999999999999999999887 999999999999999999999
Q ss_pred CCC
Q 007323 606 MQI 608 (608)
Q Consensus 606 ~T~ 608 (608)
+|+
T Consensus 179 ~t~ 181 (201)
T 3hra_A 179 RTA 181 (201)
T ss_dssp CCH
T ss_pred CCH
Confidence 984
No 157
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.71 E-value=1.1e-08 Score=106.19 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=71.9
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+..+.+|+|.|+..++.+.+++|+++|++++..|..|.||||.|+..|+.+++++|+++||+++.+|.+|+|+
T Consensus 304 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~ 380 (437)
T 1n11_A 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP 380 (437)
T ss_dssp TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCH
Confidence 44555667899999999999999999999999999999999999999999999999999999999999999999984
No 158
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.71 E-value=2.1e-08 Score=97.70 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=70.2
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+|+|.|+..++.+.++.|++.|++++. +..|.||||.|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus 183 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~ 258 (285)
T 3d9h_A 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP 258 (285)
T ss_dssp TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence 444556678999999999999999999999999995 8889999999999999999999999999999999999985
No 159
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.70 E-value=1.4e-08 Score=98.85 Aligned_cols=71 Identities=27% Similarity=0.262 Sum_probs=34.4
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ 607 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T 607 (608)
....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|
T Consensus 57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 127 (285)
T 3d9h_A 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT 127 (285)
T ss_dssp CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCC
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444
No 160
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.70 E-value=1.4e-08 Score=102.75 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=66.4
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGAD-----PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~-----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 606 (608)
++..+....+|+|.|+..++.+.++.|++.|++ ++..|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~ 245 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT 245 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence 344556677889999999999999999998888 888888999999999999999999999999999999999988
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 246 tp 247 (364)
T 3ljn_A 246 VP 247 (364)
T ss_dssp CH
T ss_pred CH
Confidence 84
No 161
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.70 E-value=2.7e-08 Score=92.87 Aligned_cols=77 Identities=25% Similarity=0.219 Sum_probs=71.3
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 161 (223)
T 2f8y_A 85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161 (223)
T ss_dssp TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999984
No 162
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.70 E-value=2.5e-08 Score=93.68 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=61.0
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.++..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 142 (231)
T 3aji_A 65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA 142 (231)
T ss_dssp CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 345555666778888888888888888888888888888888888888888888888888888888888888777763
No 163
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.69 E-value=1.1e-08 Score=97.70 Aligned_cols=77 Identities=25% Similarity=0.219 Sum_probs=71.4
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+....+++|.|+..+..+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 193 (253)
T 1yyh_A 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193 (253)
T ss_dssp TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999984
No 164
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.68 E-value=4.7e-08 Score=89.56 Aligned_cols=73 Identities=21% Similarity=0.222 Sum_probs=38.8
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHH-HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC-CCCCCcCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQ 607 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll-~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~T 607 (608)
.+....+|+|.|+..++.+.++.|+ ..+++++..|..|.||||.|+..|+.+++++|+++| ++++.+|..|+|
T Consensus 68 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 142 (201)
T 3hra_A 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142 (201)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence 3334445555555555555555555 334455555555555555555555555555555555 555555555554
No 165
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.67 E-value=2.5e-08 Score=94.06 Aligned_cols=78 Identities=28% Similarity=0.402 Sum_probs=61.1
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC-CCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~T~ 608 (608)
.++..+....+|+|.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++| ++++..|..|+|+
T Consensus 36 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 114 (237)
T 3b7b_A 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114 (237)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCH
T ss_pred CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCH
Confidence 34445556677888888888888888888888888888888888888888888888888888877 7888888877773
No 166
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.66 E-value=1.8e-08 Score=100.21 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=64.8
Q ss_pred ccchhhhhhhhHhHHHh----cCCHHHHHHHHHcCC--------------------------------------------
Q 007323 532 ISKHEAELALKVNSAAY----HGDLYQLEGLIRAGA-------------------------------------------- 563 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~----~~~~~~~~~Ll~~ga-------------------------------------------- 563 (608)
++..+..+.+|+|+|+. .+..+.++.+++.++
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~ 273 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA 273 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHH
Confidence 34455566778888887 778888887776532
Q ss_pred -CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 564 -DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 564 -~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+++..|..|+||||+|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus 274 ~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp 319 (327)
T 1sw6_A 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319 (327)
T ss_dssp HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred hCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 578889999999999999999999999999999999999999995
No 167
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.64 E-value=3.2e-08 Score=93.00 Aligned_cols=74 Identities=19% Similarity=0.068 Sum_probs=68.5
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHH----HHHHhcCCCC------CCcCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM----TFLIQKGVDI------NLKGNS 604 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~------~~~~~~ 604 (608)
.+....+|+|.|+..++.+.++.|+++|++++..|..|+||||+|+..|+.+++ ++|+++|+++ +.+|..
T Consensus 117 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~ 196 (232)
T 2rfa_A 117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ 196 (232)
T ss_dssp SCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC
Confidence 344678999999999999999999999999999999999999999999999988 9999999998 588999
Q ss_pred CCCC
Q 007323 605 IMQI 608 (608)
Q Consensus 605 g~T~ 608 (608)
|+|+
T Consensus 197 g~tp 200 (232)
T 2rfa_A 197 GLTP 200 (232)
T ss_dssp SCCH
T ss_pred CCCH
Confidence 9984
No 168
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.63 E-value=1.9e-08 Score=97.95 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCC-CCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI-MQI 608 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-~T~ 608 (608)
+.+|+|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..| .|+
T Consensus 62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~ 132 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS 132 (285)
T ss_dssp TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence 5789999999999999999999999999999999999999999999999999999999999998888 563
No 169
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.63 E-value=4.6e-08 Score=92.40 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=70.0
Q ss_pred cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCC----CCCCcCCC
Q 007323 529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV----DINLKGNS 604 (608)
Q Consensus 529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~ 604 (608)
...++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+ +++..|..
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 115 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence 34456666778899999999999999999999999999999999999999999999999999999987 88888888
Q ss_pred CCCC
Q 007323 605 IMQI 608 (608)
Q Consensus 605 g~T~ 608 (608)
|+|+
T Consensus 116 g~t~ 119 (241)
T 1k1a_A 116 GLTA 119 (241)
T ss_dssp SCCH
T ss_pred CCcH
Confidence 8874
No 170
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.62 E-value=2.9e-08 Score=100.72 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=68.7
Q ss_pred hhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 535 HEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
.+..+.+++|.|+..++.+.++.|++.| ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~ 349 (373)
T 2fo1_E 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA 349 (373)
T ss_dssp SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence 3456678999999999999999999876 9999999999999999999999999999999999999999999984
No 171
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.62 E-value=1.5e-08 Score=96.85 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=66.9
Q ss_pred hhhhHhHHHhcCCHHHHHHHHH---cCCCCCCCCCCCchHHhHHHh--cCcHH-------HHHHHHhcCCCC-------C
Q 007323 539 LALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAAS--RGYEE-------IMTFLIQKGVDI-------N 599 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~--~~~~~-------~v~~Ll~~ga~~-------~ 599 (608)
+.+|+|.|+..++.+.++.|++ +|++++..|..|+||||+|+. .++.+ ++++|+++|+++ +
T Consensus 136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~ 215 (256)
T 2etb_A 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215 (256)
T ss_dssp CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence 7899999999999999999999 999999999999999999998 78888 999999999999 8
Q ss_pred CcCCCCCCC
Q 007323 600 LKGNSIMQI 608 (608)
Q Consensus 600 ~~~~~g~T~ 608 (608)
.+|..|+|+
T Consensus 216 ~~d~~g~tp 224 (256)
T 2etb_A 216 ISNHQGLTP 224 (256)
T ss_dssp CCCTTSCCH
T ss_pred ccCCCCCCH
Confidence 999999984
No 172
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.61 E-value=3.2e-08 Score=96.32 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=40.1
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCC-chHHhHHHhcCcHHHHHHHHhcCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDG-RSPLHLAASRGYEEIMTFLIQKGVDI 598 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g-~tpL~~A~~~~~~~~v~~Ll~~ga~~ 598 (608)
+..+..+.+|+|.|+..++.+.++.|+++|++++..+..| .||||.|+..|+.+++++|+++|+++
T Consensus 89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST 155 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence 3344455566666666666666666666666666666655 46666666666666666666666555
No 173
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.60 E-value=4.3e-08 Score=101.80 Aligned_cols=78 Identities=21% Similarity=0.236 Sum_probs=69.4
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..+..+....+|+|.|+..++.+.+++|++.|++++..|..|.||||.|+..|+.+++++|+++|++++..|..|.|+
T Consensus 39 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~ 116 (437)
T 1n11_A 39 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116 (437)
T ss_dssp CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence 445556667889999999999999999999999999999999999999999999999999999999999999999874
No 174
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.59 E-value=1.1e-07 Score=94.89 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=30.9
Q ss_pred cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600 (608)
Q Consensus 533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 600 (608)
+..+..+.+|||+|+..++.++++.|+++|+++|.. +|||.|+..|+.++|++|+++||++|.
T Consensus 267 n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 267 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 334444445555555555555555555555544432 255555555555555555555555544
No 175
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.58 E-value=3e-08 Score=95.03 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=67.1
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHH---cCCCCCCCCCCCchHHhHHHhcCc---------HHHHHHHHhcCCCC------
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAASRGY---------EEIMTFLIQKGVDI------ 598 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~~~~---------~~~v~~Ll~~ga~~------ 598 (608)
..+.+|+|.|+..++.+.++.|++ .|++++..|..|+||||+|+..++ .+++++|+++|+++
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~ 217 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL 217 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence 457899999999999999999999 999999999999999999998877 79999999999999
Q ss_pred -CCcCCCCCCC
Q 007323 599 -NLKGNSIMQI 608 (608)
Q Consensus 599 -~~~~~~g~T~ 608 (608)
+.+|..|+|+
T Consensus 218 ~~~~d~~g~tp 228 (260)
T 3jxi_A 218 EALLNNDGLSP 228 (260)
T ss_dssp GGCCCTTSCCH
T ss_pred hhcccCCCCCH
Confidence 6799999984
No 176
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.57 E-value=1.4e-07 Score=91.45 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=65.3
Q ss_pred hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 108 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCH
Confidence 4456789999999999999999999999999999999999999999999999999999999999999988874
No 177
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.55 E-value=4.9e-08 Score=94.52 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=66.5
Q ss_pred ccchhhhhhhhHhHHH-----hcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323 532 ISKHEAELALKVNSAA-----YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa-----~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 606 (608)
.+..+..+.+|++.++ ..+..+.++.++..|++.+..+..|+||||.|+..|+.+++++|+++|+|+|.+|.+|+
T Consensus 138 ~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~ 217 (276)
T 4hbd_A 138 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS 217 (276)
T ss_dssp TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 3444556677888887 55777888888888888888888999999999999999999999999999999999999
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 218 Tp 219 (276)
T 4hbd_A 218 TA 219 (276)
T ss_dssp CH
T ss_pred CH
Confidence 85
No 178
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.53 E-value=1.4e-07 Score=91.35 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=61.2
Q ss_pred ccccchhhhhhhhHhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602 (608)
Q Consensus 530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~ 602 (608)
..++..+..+.+|+|.|+..++.+.++.|++ .|++++..|..|.||||+|+..|+.+++++|+++||+++.+|
T Consensus 210 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence 3445556667788888888888888888888 788888888888889998888888888888888888888877
No 179
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.52 E-value=4.1e-08 Score=94.85 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=66.7
Q ss_pred hhhhhHhHHHhcCCHHHHHHHHH---cCCCCCCCCCCCchHHhHHHhcCc---------HHHHHHHHhcCCCCCC-----
Q 007323 538 ELALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAASRGY---------EEIMTFLIQKGVDINL----- 600 (608)
Q Consensus 538 ~~~~~L~~aa~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~~~~---------~~~v~~Ll~~ga~~~~----- 600 (608)
...+|+|.|+..++.+.+++|++ .|++++..|..|+||||+|+..|+ .+++++|+++|+++|.
T Consensus 147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~ 226 (273)
T 2pnn_A 147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE 226 (273)
T ss_dssp SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence 57899999999999999999999 999999999999999999999888 8999999999999974
Q ss_pred --cCCCCCCC
Q 007323 601 --KGNSIMQI 608 (608)
Q Consensus 601 --~~~~g~T~ 608 (608)
+|..|+|+
T Consensus 227 ~~~d~~g~Tp 236 (273)
T 2pnn_A 227 EITNRKGLTP 236 (273)
T ss_dssp GCCCTTSCCH
T ss_pred cccCCCCCCH
Confidence 89999984
No 180
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.51 E-value=1e-07 Score=96.31 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=70.7
Q ss_pred chhhhhhhhHhHHHhcC--CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC-----CCCcCCCCC
Q 007323 534 KHEAELALKVNSAAYHG--DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-----INLKGNSIM 606 (608)
Q Consensus 534 ~~~~~~~~~L~~aa~~~--~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~ 606 (608)
..+....+++|.|+..+ +.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++ +|..|..|+
T Consensus 133 ~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp EEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred cCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence 35566789999999999 99999999999999999999999999999999999999999999999 999999999
Q ss_pred CC
Q 007323 607 QI 608 (608)
Q Consensus 607 T~ 608 (608)
|+
T Consensus 213 t~ 214 (364)
T 3ljn_A 213 SH 214 (364)
T ss_dssp CT
T ss_pred cH
Confidence 85
No 181
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.51 E-value=8.3e-08 Score=90.46 Aligned_cols=77 Identities=23% Similarity=0.207 Sum_probs=68.8
Q ss_pred ccchhh-hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCC--CcCCCCCCC
Q 007323 532 ISKHEA-ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN--LKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~-~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~T~ 608 (608)
++..+. .+.+|+|.|+..++.+.+++|+++|++++..|..|.||||+|+..|+.+++++|+++||+.. .++.+|.|.
T Consensus 143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~ 222 (236)
T 1ikn_D 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222 (236)
T ss_dssp TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHH
Confidence 344444 67899999999999999999999999999999999999999999999999999999999876 677777763
No 182
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.50 E-value=7e-09 Score=103.51 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 267 ~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.+|+||+++|+||+||||+.|.|..+++++++++++|+.+++++++.+.+.+.+
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999998877654
No 183
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.49 E-value=9.9e-08 Score=100.65 Aligned_cols=74 Identities=18% Similarity=0.101 Sum_probs=62.2
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 604 (608)
+++..+..+.+|||+|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|+++||+++..+..
T Consensus 199 ~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~h 272 (497)
T 3lvq_E 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 272 (497)
T ss_dssp CTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--------
T ss_pred CCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCCcce
Confidence 45556677899999999999999999999999999999999999999999999999999999999999986543
No 184
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.49 E-value=1.9e-07 Score=93.68 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=66.6
Q ss_pred hhhhhHhHHHhc-CCHHHHHHHHHcCCCCCCCC--CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 538 ELALKVNSAAYH-GDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 538 ~~~~~L~~aa~~-~~~~~~~~Ll~~ga~~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
...+++|.|+.. ++.+.++.|+.+|++++..+ ..|.||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP 271 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 345789999999 99999999999999999988 889999999999999999999999999999999999984
No 185
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.48 E-value=4.8e-08 Score=97.14 Aligned_cols=79 Identities=14% Similarity=0.057 Sum_probs=70.9
Q ss_pred ccccc-hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc---HHHHHHHHhcC-CCCCCcCCC
Q 007323 530 FHISK-HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKG-VDINLKGNS 604 (608)
Q Consensus 530 ~~i~~-~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~---~~~v~~Ll~~g-a~~~~~~~~ 604 (608)
..++. .+..+.+|||+|+..++.+.++.|+++|++++..|..|+||||+|+..|+ .++++.|++.+ ++++.+|..
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~ 200 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence 44555 67788999999999999999999999999999999999999999999998 67888888876 889999999
Q ss_pred CCCC
Q 007323 605 IMQI 608 (608)
Q Consensus 605 g~T~ 608 (608)
|+|+
T Consensus 201 g~tp 204 (327)
T 1sw6_A 201 NRTI 204 (327)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 9985
No 186
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=98.42 E-value=5.7e-07 Score=86.93 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=66.6
Q ss_pred chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCC------CCCCCCchHHhHHHhc---CcHHHHHHHHhcCCCCCCcCCC
Q 007323 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLKGNS 604 (608)
Q Consensus 534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~------~~d~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~ 604 (608)
........+++.|+..++.+.+..++..|++++ ..|..|+||||.|+.. |+.+++++|+++|+++|.+|..
T Consensus 125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~ 204 (278)
T 1dcq_A 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK 204 (278)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence 344556678999999999999999999999854 4578899999999999 8999999999999999999999
Q ss_pred CCCC
Q 007323 605 IMQI 608 (608)
Q Consensus 605 g~T~ 608 (608)
|+|+
T Consensus 205 g~Tp 208 (278)
T 1dcq_A 205 GSTA 208 (278)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 9985
No 187
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.41 E-value=4.1e-07 Score=85.55 Aligned_cols=70 Identities=33% Similarity=0.455 Sum_probs=58.7
Q ss_pred hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
..++++.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~ 145 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcH
Confidence 5678888888888888888888888888888888888888888888888888888888888888888763
No 188
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.40 E-value=1.8e-07 Score=94.78 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=71.8
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC---CCCCCcCCCCCC
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG---VDINLKGNSIMQ 607 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~T 607 (608)
.++..+..+.+|+|.|+..++.+.+++|+++|++++..|..|.||||.|+..|+.+++++|+++| ++++..|..|+|
T Consensus 158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t 237 (373)
T 2fo1_E 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237 (373)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence 45556677889999999999999999999999999999999999999999999999999999988 899999999988
Q ss_pred C
Q 007323 608 I 608 (608)
Q Consensus 608 ~ 608 (608)
+
T Consensus 238 ~ 238 (373)
T 2fo1_E 238 A 238 (373)
T ss_dssp H
T ss_pred H
Confidence 4
No 189
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.34 E-value=2.8e-07 Score=90.21 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=62.1
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 598 (608)
++..+..+.+|||+|+..++.+.+++|++.|++++..|..|.||||+|+..|+.+++++|+++|++.
T Consensus 219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~ 285 (301)
T 2b0o_E 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT 285 (301)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence 4455677889999999999999999999999999999999999999999999999999999999873
No 190
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.34 E-value=6.4e-07 Score=84.24 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=68.8
Q ss_pred ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI 608 (608)
Q Consensus 532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~ 608 (608)
++..+....+++|.|+..++.+.++.|++.|++++..+ ..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus 35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC 112 (240)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence 44455667889999999999999999999999988665 449999999999999999999999999999999999874
No 191
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.34 E-value=7.7e-07 Score=72.55 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=56.1
Q ss_pred cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHH
Q 007323 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591 (608)
Q Consensus 531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L 591 (608)
.++..+....+++|.|+..++.+.+++|+++|++++..|..|+||||+|+..|+.+++++|
T Consensus 49 ~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 3455667788999999999999999999999999999999999999999999999999986
No 192
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.00 E-value=9.8e-07 Score=88.88 Aligned_cols=70 Identities=19% Similarity=0.064 Sum_probs=53.4
Q ss_pred hhhhhhHhHHHhcCCHHHHHHHHHcCCCC---CCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC--cCCCCCC
Q 007323 537 AELALKVNSAAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL--KGNSIMQ 607 (608)
Q Consensus 537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~T 607 (608)
....+|+|.|+..|+.+++++|+++|+++ +..+.+ .||||.|+..|+.+++++|+++|++++. .|.+|+|
T Consensus 126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~T 200 (376)
T 2aja_A 126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200 (376)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCC
Confidence 34556899999999999999999988752 222222 8899999999999999999999988776 6655554
No 193
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=97.50 E-value=1.2e-05 Score=80.92 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=43.0
Q ss_pred hhhHhHHHhcCCHHHHHHHHHcCCCCCC--CCCCCchHHhHHH-hcCcHHHHHHHHhcCC
Q 007323 540 ALKVNSAAYHGDLYQLEGLIRAGADPNR--TDYDGRSPLHLAA-SRGYEEIMTFLIQKGV 596 (608)
Q Consensus 540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~--~d~~g~tpL~~A~-~~~~~~~v~~Ll~~ga 596 (608)
.+|+|.|+..|+.+++++|+++|++++. .|..|.||||.|+ ..|+.+++++|+++|+
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence 6777777777787888877777777665 6666777777777 7777777777776654
No 194
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=87.44 E-value=0.72 Score=51.34 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320 (608)
Q Consensus 264 ~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~ 320 (608)
.....++||++.++++.| ++..|.+...|++.++++++++++.+...+++++.+..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456689999999999999 88999999999999999999999999999999998864
No 195
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=75.33 E-value=15 Score=28.61 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=40.2
Q ss_pred eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 413 ~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
..+.+|..+-....+...++++++|.+.+.. +|+ ...+++||.+=-. .+.+ ..+++.+++.++.+
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~---~~~l~~Gd~i~i~---~~~~--H~~~~~~~~~~~~i 107 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ---KIDLVPEDVLMVP---AHKI--HAIAGKGRFKMLQI 107 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE---EEEECTTCEEEEC---TTCC--BEEEEEEEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE---CCE---EEEecCCCEEEEC---CCCc--EEEEeCCCcEEEEE
Confidence 3456666554444456689999999999765 443 3578999864322 2333 45555566665544
No 196
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=73.99 E-value=16 Score=28.75 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=44.0
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeE
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~ 486 (608)
+....++||..+-..--+.+.++++++|++.+.. +|+ ...+++||.+=-. .+ ....+++.+++.++
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~ip---~~--~~H~~~~~~~~~~~ 103 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGA---QRRLHQGDLLYLG---AG--AAHDVNAITNTSLL 103 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTE---EEEECTTEEEEEC---TT--CCEEEEESSSEEEE
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCE---EEEECCCCEEEEC---CC--CcEEEEeCCCcEEE
Confidence 3456778888776555556789999999999875 444 3678999865422 12 34566777766543
No 197
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=73.38 E-value=13 Score=33.66 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=51.8
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEec
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRID 489 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~ 489 (608)
+....+.||+.+-..--+.+.++++++|++++.. +|++ ..+++||++=- ....+..++|.+++.++.+.
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~---~~l~~Gd~~~~-----p~~~~H~~~a~~~~~~l~i~ 107 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK---KTISNGDFLEI-----TANHNYSIEARDNLKLIEIG 107 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE---EEEETTEEEEE-----CSSCCEEEEESSSEEEEEEE
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEEE-----CCCCCEEEEECCCcEEEEEE
Confidence 3456789999987777788899999999999876 4543 57889986432 22235678888999888773
Q ss_pred h
Q 007323 490 K 490 (608)
Q Consensus 490 ~ 490 (608)
.
T Consensus 108 ~ 108 (227)
T 3rns_A 108 E 108 (227)
T ss_dssp E
T ss_pred e
Confidence 3
No 198
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=66.46 E-value=14 Score=29.36 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=40.7
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEe-ceeeeEEe
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC-ELCRLLRI 488 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~-~~~~l~~l 488 (608)
...+.||..+-.. ...+++++|++|++.+.. +|+. ..+++||.+--. .+.+ ....+. +.+.++.+
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v~ip---~g~~--H~~~~~~~~~~~l~v 109 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGET---VTAGPGEIVYMP---KGET--VTIRSHEEGALTAYV 109 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTEE---EEECTTCEEEEC---TTCE--EEEEEEEEEEEEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEEEC---CCCE--EEEEcCCCCeEEEEE
Confidence 4567778765443 366799999999999875 4543 578999976433 2333 333443 44555443
No 199
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=62.72 E-value=36 Score=26.30 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=41.3
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
....+.||..+-..--....++++++|.+.+.. +|+. ..+.+|+++=.. .+. ....++.++++++.+
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET---YRVAEGQTIVMP---AGI--PHALYAVEAFQMLLV 109 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTCEEEEC---TTS--CEEEEESSCEEEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE---EEECCCCEEEEC---CCC--CEEEEECCCceEEEE
Confidence 345677777654333335689999999998865 4443 578899875322 122 345566666665543
No 200
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=60.98 E-value=37 Score=26.28 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=42.1
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
+....+.||..+-..--+...++++++|.+.+.. +|+ ...+.+||.+=.. .+ .....++.+++.++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ip---~~--~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV---IKVLTAGDSFFVP---PH--VDHGAVCPTGGILIDT 103 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE---EEEECTTCEEEEC---TT--CCEEEEESSCEEEEEE
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE---EEEeCCCCEEEEC---cC--CceeeEeCCCcEEEEE
Confidence 3445677777643322335689999999998875 443 3578999874322 12 2345666666666555
No 201
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=58.97 E-value=5.3 Score=41.33 Aligned_cols=15 Identities=7% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHhhCCHHHHHHHHH
Q 007323 368 VLQDIPISIRAKISQ 382 (608)
Q Consensus 368 ~l~~lp~~Lr~~i~~ 382 (608)
-..++...+++++..
T Consensus 472 ~~~el~e~~~~~~~~ 486 (514)
T 2r9r_B 472 DYMEIQEGVNNSNED 486 (514)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 334555555544443
No 202
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=58.12 E-value=11 Score=35.41 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=1.9
Q ss_pred HHHHHHHH
Q 007323 310 LIGNMTAL 317 (608)
Q Consensus 310 ~i~~i~~~ 317 (608)
+..++...
T Consensus 235 i~~~f~~~ 242 (285)
T 3rvy_A 235 CVDAMAIL 242 (285)
T ss_dssp HHHHC---
T ss_pred HHHHHHHH
Confidence 33333333
No 203
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=57.02 E-value=12 Score=32.43 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=37.5
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||..........+++++|++|++.+...+.+|.+ ...+++||++=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~--~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD--TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE--EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE--EEEECCCCEEE
Confidence 45667888877654433457999999999998776555533 56899999764
No 204
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=51.62 E-value=29 Score=26.57 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=31.9
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||..-.. -+.+++++|++|++.+.. .+|+. ..+++||.+=
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~~---~~l~~GD~i~ 79 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGKK---YVIEKGDLVT 79 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCCE---EEEETTCEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCCE---EEECCCCEEE
Confidence 3556777775444 346789999999999875 22443 5789999754
No 205
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=51.32 E-value=23 Score=36.27 Aligned_cols=60 Identities=8% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHHHHHHceeeeecCCCeEEccC-CccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 403 INQIVIRLHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~g-~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+..+-..+....+.||..+-.-- ...+++++|++|.+.+...+.+|++.....+.+||++
T Consensus 367 L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred cccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 34444456777889988653322 2357999999999999887777776556679999976
No 206
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=50.89 E-value=27 Score=35.68 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+..+-..+....+.||-++-.- ...++++.+|++|.+.+...+.+|+......+.+||+|=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 4444456677888998876432 233679999999999998888888776778899999874
No 207
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=50.65 E-value=27 Score=26.70 Aligned_cols=68 Identities=12% Similarity=0.030 Sum_probs=39.8
Q ss_pred ecCCCeEEccCCccCeEEEEEeeEEEEEEeccCC-ceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhH
Q 007323 415 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493 (608)
Q Consensus 415 ~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g-~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~ 493 (608)
..+|+...+..+...+++++++|.+.+.. +| + ...+.+||.+=-. .+.+ ...++.+++.++.+.....
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~---~~~l~~Gd~~~ip---~~~~--H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF---ADGG---SMTIREGEMAVVP---KSVS--HRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE---TTSC---EEEECTTEEEEEC---TTCC--EEEEEEEEEEEEEEECC--
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE---CCCc---EEEECCCCEEEEC---CCCc--EeeEeCCCeEEEEEECCCc
Confidence 34555433444334789999999999875 33 3 3578999875322 2333 3444456777777765443
No 208
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=50.32 E-value=21 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=30.9
Q ss_pred eecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465 (608)
Q Consensus 414 ~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~ 465 (608)
...||..-... +..+++++|++|++.+.. ++|. ...+++||.+---
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~---~~~l~aGD~~~~P 93 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADAD---PVKIGPGSIVSIA 93 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCC---CEEECTTEEEEEC
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe--CCCe---EEEECCCCEEEEC
Confidence 34555544443 334589999999999875 4554 3678999987544
No 209
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=49.99 E-value=32 Score=26.31 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=32.9
Q ss_pred ceeeeecCCCeEEcc--CCc-cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIMEK--GNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~--g~~-~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||..+-.. --. ...++++++|.+.+.. +|+ ...+++||++=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGH---TQALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTE---EEEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEEE
Confidence 344567888876443 233 5689999999998875 443 25788998653
No 210
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=49.69 E-value=32 Score=27.22 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=45.2
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEece-eeeEEe
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCEL-CRLLRI 488 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~-~~l~~l 488 (608)
+....+.||..+-..--+...++++++|.+.+.. +|+. ..+.+|+.+=.. .+. .....+.++ +.++.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~~l~v 111 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEET---RVLRPGMAYTIP---GGV--RHRARTFEDGCLVLDI 111 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTEE---EEECTTEEEEEC---TTC--CEEEECCTTCEEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCEE---EEeCCCCEEEEC---CCC--cEEeEECCCCEEEEEE
Confidence 3456677887764443445689999999999875 4433 678899865322 122 334455444 444322
Q ss_pred ---chhhHHHHH
Q 007323 489 ---DKQSFTNII 497 (608)
Q Consensus 489 ---~~~~~~~ll 497 (608)
+++++.+.+
T Consensus 112 ~~p~~~d~~~~~ 123 (126)
T 4e2g_A 112 FSPPREDYARMA 123 (126)
T ss_dssp EESCCHHHHHHH
T ss_pred ECCCCcchhhhh
Confidence 345555444
No 211
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=49.33 E-value=29 Score=35.47 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=43.7
Q ss_pred HHHHHHHceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+..+-..+....+.||..+-.- ....+++++|++|.+.+...+.+|+......+++||++=
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 3444456677788898865332 233578999999999988877777664456799999864
No 212
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=49.20 E-value=28 Score=35.43 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=40.6
Q ss_pred HceeeeecCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 409 RLHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~-~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
.+....+.||..+-.---+ .+++++|++|++.+...+.+|++.....+++||++
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~ 393 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL 393 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEE
Confidence 4566788888865333223 57999999999999887777766556679999976
No 213
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=49.11 E-value=25 Score=30.07 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=30.4
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||...-.-.....++.+|++|++.+.. .+|++ ..+++||.+
T Consensus 82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge~---~~L~~GDsi 128 (172)
T 3es1_A 82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGAK---RTVRQGGII 128 (172)
T ss_dssp EEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGCE---EEECTTCEE
T ss_pred EEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCeE---EEECCCCEE
Confidence 445677776432222233468899999999865 22433 578999987
No 214
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=48.56 E-value=19 Score=28.87 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=30.1
Q ss_pred eecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 414 ~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
...||..-.+..+ .+++++|++|++.+.. ++|.. ..+++||.+--
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~---~~l~~GD~~~i 99 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV---HAVKAGDAFIM 99 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE---EEEETTCEEEE
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE---EEECCCCEEEE
Confidence 4556665544332 2789999999999864 34543 56899997653
No 215
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=47.89 E-value=27 Score=29.70 Aligned_cols=61 Identities=8% Similarity=0.044 Sum_probs=39.4
Q ss_pred CccCeEEEEEeeEEEEEEeccCC---ceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhh
Q 007323 426 NVVDQLYFVCLGKLEEVGIEENG---TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS 492 (608)
Q Consensus 426 ~~~~~ly~i~~G~v~~~~~~~~g---~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~ 492 (608)
++.++++++++|.+.+...+ +| .+..-..+++||+|=.. .+.+ .+-++..++..+.+.+..
T Consensus 52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmfllP---~gvp--HsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSYLLP---GNVP--HSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEEEEC---TTCC--EEEEECTTCEEEEEEECC
T ss_pred CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEEEcC---CCCC--cCCcccCCcEEEEEEecC
Confidence 34568999999999988754 34 12334678999987533 2333 344445677777776543
No 216
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=47.80 E-value=39 Score=25.27 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.1
Q ss_pred eeeeecCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 411 HEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~-~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||..+-..--. .+.++++++|.+.+.. +|+ ...+.+||++
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~---~~~l~~Gd~~ 77 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE---EALLAPGMAA 77 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34567788776433223 3579999999998865 343 3578899875
No 217
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=47.58 E-value=52 Score=29.46 Aligned_cols=67 Identities=21% Similarity=0.112 Sum_probs=45.0
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEE-eceeeeEE
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLR 487 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a-~~~~~l~~ 487 (608)
+....+.||..+-..--+.+.++++++|.+.+.. +|+ ...+.+||.+=-. .+ .+..+++ .++++++.
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~---~~~l~~Gd~i~ip---~~--~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGK---PFIVKKGESAVLP---AN--IPHAVEAETENFKMLL 222 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTE---EEEEETTEEEEEC---TT--SCEEEECCSSCEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCE---EEEECCCCEEEEC---CC--CcEEEEeCCCCEEEEE
Confidence 4456788998876554556689999999999875 454 3678899864322 12 3345666 67776554
No 218
>2xp1_A SPT6; transcription, IWS1, histone chaperone, mRNA export; 2.20A {Antonospora locustae}
Probab=46.37 E-value=54 Score=28.14 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=30.2
Q ss_pred cccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEE
Q 007323 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 433 (608)
Q Consensus 390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~ 433 (608)
-++|.|.+++..+-.+++.. .+||.|+++...++++-+
T Consensus 12 I~HP~F~n~s~~qAe~~L~~------~~G~~liRPSsk~~~lti 49 (178)
T 2xp1_A 12 YKHPLFKNFNVTESENYLRS------STDDFLIRKGSRHGYCVL 49 (178)
T ss_dssp GGSTTEECCCHHHHHHHHHH------SSCCEEEEECSSTTEEEE
T ss_pred ccCCCcCCCCHHHHHHHHhc------CCCCEEEeecCCCCcEEE
Confidence 35899999999888887776 259999999988766433
No 219
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=44.27 E-value=26 Score=28.60 Aligned_cols=65 Identities=8% Similarity=0.126 Sum_probs=41.3
Q ss_pred EccCCccCeEEEEEeeEEEEEEecc--CCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechh
Q 007323 422 MEKGNVVDQLYFVCLGKLEEVGIEE--NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ 491 (608)
Q Consensus 422 ~~~g~~~~~ly~i~~G~v~~~~~~~--~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~ 491 (608)
.+..+..|++|+|++|++.+...+. ++.+.-...+++|+++--. .| -...-.|.+.|.++.+...
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP---kG--veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP---AE--CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC---TT--CEEEEEECTTCEEEEEEES
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC---CC--ccCcccCCCceEEEEEEeC
Confidence 4555667899999999999877532 1111234578999876432 11 1345566777887777654
No 220
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=44.17 E-value=39 Score=34.10 Aligned_cols=61 Identities=5% Similarity=0.116 Sum_probs=45.4
Q ss_pred HHHHHHHceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+..+-..+....+.||-+...- .-.+.+++++++|++.+...+.+|+...-..+.+||+|=
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 4445556677788888875432 233679999999999999888888765556899999874
No 221
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=43.09 E-value=46 Score=29.66 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 007323 172 KEAVRYLLWIRLYRVRK 188 (608)
Q Consensus 172 ~~~~~~l~l~rl~r~~r 188 (608)
...+|++|++|++|+.+
T Consensus 99 lr~lRllRllR~~r~~~ 115 (223)
T 1orq_C 99 FRLVRLLRFLRILLIIS 115 (223)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34577788888887765
No 222
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=43.02 E-value=31 Score=29.33 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=37.7
Q ss_pred ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEec-eeeeEEechhh
Q 007323 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQS 492 (608)
Q Consensus 427 ~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~ 492 (608)
+.+++|++++|.+.+...+ +|+ ..-..+++||+|=.. .|.+ .+-++.+ ++..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~-~~~v~l~eGE~f~lP---~gvp--H~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGR-RERADLKEGDIFLLP---PHVR--HSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTE-EEEEEECTTCEEEEC---TTCC--EEEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEEEEc-CCc-eeeEEECCCCEEEeC---CCCC--cCccccCCCCEEEEEEeCC
Confidence 4678999999999987653 343 234678999987543 2322 3444454 66666665543
No 223
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=42.70 E-value=29 Score=28.21 Aligned_cols=45 Identities=11% Similarity=-0.076 Sum_probs=30.5
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
...+.||..-.. ...+++++|++|++.+.. +|+. ..+++||.+--
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~---~g~~---~~l~~GD~i~~ 105 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH---EGET---MIAKAGDVMFI 105 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE---TTEE---EEEETTCEEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE---CCEE---EEECCCcEEEE
Confidence 445677732222 235789999999999875 4543 47899997653
No 224
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=41.66 E-value=66 Score=25.20 Aligned_cols=48 Identities=19% Similarity=0.109 Sum_probs=31.4
Q ss_pred ceeeeecCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 410 LHEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~-~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||..+-..--. ...+++|++|++.+.. .+|++ ..+++||++
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~---~~l~~Gd~~ 89 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV---THLKAGDIA 89 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE---EEEETTEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE---EEeCCCCEE
Confidence 345667788776443333 3578999999998753 23433 567899865
No 225
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=40.66 E-value=48 Score=28.03 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=31.6
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||..+-..--....+++|++|.+.+.. +|+ ...+.+||++=
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR---VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE---EEEECCCCEEE
Confidence 345666776553333346789999999999865 443 36788998753
No 226
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=39.73 E-value=68 Score=23.81 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=34.3
Q ss_pred CccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEech
Q 007323 426 NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490 (608)
Q Consensus 426 ~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~ 490 (608)
+....++++++|.+.+.. +|+. ..+.+||++=-. .+. .....+.+++.++.++.
T Consensus 48 ~~~~e~~~v~~G~~~~~~---~~~~---~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 48 ADTDEVFIVMEGTLQIAF---RDQN---ITLQAGEMYVIP---KGV--EHKPMAKEECKIMIIEP 101 (102)
T ss_dssp TTCCEEEEEEESEEEEEC---SSCE---EEEETTEEEEEC---TTC--CBEEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEeCEEEEEE---CCEE---EEEcCCCEEEEC---CCC--eEeeEcCCCCEEEEEEc
Confidence 333789999999998765 4433 567899865222 233 34455557777777653
No 227
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=38.67 E-value=23 Score=29.41 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 007323 178 LLWIRLYRVRKVSQFF 193 (608)
Q Consensus 178 l~l~rl~r~~r~~~~~ 193 (608)
+|++|++|+.|+.++.
T Consensus 112 lRllRv~Rllrl~r~~ 127 (147)
T 2kyh_A 112 FRLVRLLRFLRILLII 127 (147)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 228
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=38.40 E-value=38 Score=28.53 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=31.5
Q ss_pred eeeeecCCCeE--EccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVI--MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i--~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||... .+.....+++++|++|++.+.. +++ ...+++||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~---~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG---EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE---EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE---EEEeCCCCEEE
Confidence 35567777754 2233334689999999999876 443 36788998653
No 229
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=38.40 E-value=65 Score=28.17 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=35.2
Q ss_pred ceeeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccC--CceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEEN--GTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~--g~~~~~~~l~~G~~fG 463 (608)
+....+.||...-. .....++++++++|++.+...+.+ |.+.....+++||++=
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 44567788876532 233357999999999998664332 1333356789999764
No 230
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=38.09 E-value=50 Score=32.02 Aligned_cols=52 Identities=10% Similarity=0.006 Sum_probs=36.2
Q ss_pred eeeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||...-. .....+++++|++|++.+...+.+|+. ....+++||++=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~-~~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKV-EIADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCE-EEEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcE-EEEEEcCCCEEE
Confidence 3556778876432 333367999999999998876666643 236789999653
No 231
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=37.95 E-value=56 Score=33.23 Aligned_cols=61 Identities=7% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+..+-..+....+.||-+.--- .-.++++.++++|.+.+...+.+|+..+-..+.+||+|=
T Consensus 353 L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 414 (496)
T 3ksc_A 353 LRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALT 414 (496)
T ss_dssp HHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 3444445667788888765332 234678999999999999888888765566899999873
No 232
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=37.93 E-value=48 Score=32.57 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=36.2
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+....+.||...-..--+..++++|++|++.+...+.+|+. ....+++||++
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~-~~~~l~~GD~~ 132 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLW 132 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCE-EEEEEETTEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcE-EEEEeCCCCEE
Confidence 34566788876533222367999999999998876656664 23478999975
No 233
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=37.68 E-value=38 Score=28.36 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=31.3
Q ss_pred eeeeecCCCe-E-EccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 411 HEEFFLPGEV-I-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~-i-~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||.. . .+.....+++++|++|++.+.. +|++ ..+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~---~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---ENDQ---YPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTEE---EEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCEE---EEeCCCCEE
Confidence 3456777773 2 2222345789999999999875 4433 678999976
No 234
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=36.31 E-value=42 Score=28.10 Aligned_cols=45 Identities=9% Similarity=-0.104 Sum_probs=29.4
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||...-..--...++++|++|++.+.. +|+ ...+.+||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~---~~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GET---ISDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTE---EEEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34556666543322334578999999999875 454 3567888865
No 235
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=35.92 E-value=47 Score=33.54 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=45.1
Q ss_pred HHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcee--------------------eeEEeCCCC
Q 007323 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED--------------------YVSYLHPNS 460 (608)
Q Consensus 401 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~--------------------~~~~l~~G~ 460 (608)
..++.+-..+....+.||..+...-...+.+++|++|+..+-...+++.+. .+..+++||
T Consensus 56 ~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GD 135 (459)
T 2e9q_A 56 DEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGD 135 (459)
T ss_dssp HHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTE
T ss_pred hhhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCC
Confidence 344444445667889999887555556789999999999887765544321 356899999
Q ss_pred eecch
Q 007323 461 SFGEV 465 (608)
Q Consensus 461 ~fGe~ 465 (608)
++--.
T Consensus 136 v~~iP 140 (459)
T 2e9q_A 136 LLVVP 140 (459)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87533
No 236
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=35.85 E-value=41 Score=28.48 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=29.7
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||..+-..--....+++|++|++.+.. +|+ ...+.+||++
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~---~~~l~~GD~i 101 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA---VSAVAPYDLV 101 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE---EEEeCCCCEE
Confidence 34566666543332334578999999999865 444 3678899865
No 237
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=35.56 E-value=39 Score=25.26 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=30.5
Q ss_pred eeeeecCCCeEE-ccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVIM-EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i~-~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||...- +.-+..+.+++|++|.+.+.. .+|. ....+.+||.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~--~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGS--VTSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEE--EEEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCC--EEEEEcCCCEEE
Confidence 345677777542 222222359999999999865 2331 235789998763
No 238
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=34.88 E-value=36 Score=34.22 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=39.6
Q ss_pred HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
.+....+.||..+-..-...+++++|++|++.+...+.++. ....+++||++--
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~~~ 140 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAIKI 140 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE--EEEEEETTEEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC--EEEEecCCCEEEE
Confidence 44567889998776554456799999999998876655443 4578999998643
No 239
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=34.44 E-value=58 Score=29.60 Aligned_cols=49 Identities=8% Similarity=-0.047 Sum_probs=35.6
Q ss_pred HceeeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 409 RLHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....++||..+-. .-...++.++|++|++.+.. +|+. ..+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~---~~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY---YPVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE---EEEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE---EEcCCCCEEE
Confidence 456678899987653 33445689999999998765 5544 5789999754
No 240
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=34.39 E-value=49 Score=25.65 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=27.9
Q ss_pred eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 413 ~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
..+.||...-..--....++++++|.+.+.. +|+. ...+.+||++
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~~l~~Gd~i 76 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE--PHNYKEGNIV 76 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC--CEEEETTCEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCEE--EEEeCCCCEE
Confidence 4456665542222234578999999998875 4443 1267889865
No 241
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=34.15 E-value=56 Score=26.21 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=30.8
Q ss_pred eeeeecCCCeEEccCCc-cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 411 HEEFFLPGEVIMEKGNV-VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~-~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
....+.||..+-.---. ...+++|++|.+.+.. +|+ ...+.+||++
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~---~~~l~~Gd~i 106 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGK---DVPIKAGDVC 106 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTE---EEEEETTEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCE---EEEeCCCcEE
Confidence 34567888765322222 3589999999999865 443 3568899865
No 242
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=34.12 E-value=51 Score=26.11 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=29.9
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...+.||...-.---....++++++|.+.+.. +|++ ..+.+||++=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~---~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE---ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE---EEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE---EEECCCCEEE
Confidence 44566665543323335689999999998765 4443 5678888653
No 243
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=33.18 E-value=50 Score=26.66 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 007323 175 VRYLLWIRLYRVRKVSQFFHKME 197 (608)
Q Consensus 175 ~~~l~l~rl~r~~r~~~~~~~~~ 197 (608)
+|++|++|++|+.|..+-.+.+-
T Consensus 97 lRllRv~Rvlkl~r~~~~l~~l~ 119 (132)
T 1ors_C 97 FRLVRLLRFLRILLIISRGSKFL 119 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Confidence 44444555555444444444433
No 244
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=32.99 E-value=87 Score=31.55 Aligned_cols=61 Identities=5% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHHceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+..+-..+....+.||-+.--- .-.++++.++++|.+.+-..+.+|+...-..+.+||+|=
T Consensus 318 L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfv 379 (465)
T 3qac_A 318 LRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVV 379 (465)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 3444445667788888765322 233678999999999998888888776667899999874
No 245
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=32.93 E-value=61 Score=32.90 Aligned_cols=63 Identities=8% Similarity=-0.140 Sum_probs=45.4
Q ss_pred HHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCce---------------------eeeEEeCCCC
Q 007323 402 FINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE---------------------DYVSYLHPNS 460 (608)
Q Consensus 402 ~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~---------------------~~~~~l~~G~ 460 (608)
.++.+-..+....+.||-.+...-.+.+.+++|++|+..+-...+++.+ ..+..+++||
T Consensus 42 ~l~~~gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~GD 121 (476)
T 1fxz_A 42 PFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGD 121 (476)
T ss_dssp HHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTE
T ss_pred hhccCceEEEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEeCCC
Confidence 3444444666778999988766555678999999999888777655432 1367899999
Q ss_pred eecc
Q 007323 461 SFGE 464 (608)
Q Consensus 461 ~fGe 464 (608)
++--
T Consensus 122 vi~i 125 (476)
T 1fxz_A 122 LIAV 125 (476)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 246
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=32.34 E-value=49 Score=27.54 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=32.0
Q ss_pred ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEec
Q 007323 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRID 489 (608)
Q Consensus 427 ~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~ 489 (608)
..+++++|++|++.+.. +|+ ...+++||.+=-. .+.+ ....+.++++.+.+-
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~---~~~l~~GD~i~iP---~G~~--h~~~n~~~a~~l~V~ 134 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGR---KVSASSGELIFIP---KGSK--IQFSVPDYARFIYVT 134 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTE---EEEEETTCEEEEC---TTCE--EEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCE---EEEEcCCCEEEEC---CCCE--EEEEeCCCEEEEEEE
Confidence 35688999999999875 554 3678999975322 1222 333334566555443
No 247
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=32.28 E-value=42 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.043 Sum_probs=23.7
Q ss_pred ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 427 ~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
..+.+++|++|.+.+.. +|+. ..+.+|+++=
T Consensus 109 ~gEE~~yVLeG~v~vtl---~g~~---~~L~~Gds~~ 139 (166)
T 2vpv_A 109 RTYITFHVIQGIVEVTV---CKNK---FLSVKGSTFQ 139 (166)
T ss_dssp SEEEEEEEEESEEEEEE---TTEE---EEEETTCEEE
T ss_pred CceEEEEEEEeEEEEEE---CCEE---EEEcCCCEEE
Confidence 34679999999999876 5543 5788999764
No 248
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=32.19 E-value=45 Score=33.45 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=39.6
Q ss_pred HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....+.||..+-..-...+++++|++|++.+...+.++. ....+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR--DSYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE--EEEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC--EEEEeCCCCEEE
Confidence 45677889998876665556799999999998877654332 456789999763
No 249
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=31.99 E-value=44 Score=33.26 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=38.9
Q ss_pred HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....+.||..+-..-...+++++|++|++.+...+.++. ....+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~--~~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDR--DSYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCE--EEEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCC--eEEEecCCCEEE
Confidence 35577888988766555556799999999999876655322 356789999763
No 250
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=31.85 E-value=82 Score=27.08 Aligned_cols=45 Identities=16% Similarity=0.020 Sum_probs=30.5
Q ss_pred eeeecCCCeEEc--cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 412 EEFFLPGEVIME--KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~i~~--~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||..... -.....++++|++|.+.+.. +|+ ...+.+||.+
T Consensus 108 ~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~---~~~l~~GD~i 154 (192)
T 1y9q_A 108 EITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQ---WHELQQGEHI 154 (192)
T ss_dssp EEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTE---EEEECTTCEE
T ss_pred EEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCE---EEEeCCCCEE
Confidence 346677776542 12234689999999999865 443 3578999975
No 251
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=31.85 E-value=61 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=29.3
Q ss_pred eeeeecCCCeEE--ccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVIM--EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i~--~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||..+- ..-+..+.+|++++|.+.+.. +|+. ..+.+||++=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~~---~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGEK---IELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTEE---EEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCEE---EEeCCCCEEE
Confidence 345667776542 222223457779999998765 4443 5688998653
No 252
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=31.82 E-value=70 Score=27.66 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=31.0
Q ss_pred eeeecCCCeEEc---cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 412 EEFFLPGEVIME---KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 412 ~~~~~~g~~i~~---~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...+.||...-. ...+.+++++|++|.+.+... ++.......+++||.+=
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~--~~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWG--DKENPKEALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEES--CTTSCEEEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEEC--CcCCcccEEECCCCEEE
Confidence 345677765431 222346899999999998762 21111346799999763
No 253
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=31.71 E-value=81 Score=30.49 Aligned_cols=53 Identities=17% Similarity=0.093 Sum_probs=36.9
Q ss_pred ceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||..+-.. ....+++++|++|++.+...+.+|+ .....+++||++=
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTC-EEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEE
Confidence 445678888876432 3334789999999999876555565 2346789999764
No 254
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=31.44 E-value=1.8e+02 Score=22.55 Aligned_cols=77 Identities=14% Similarity=-0.041 Sum_probs=42.3
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEe--ceee--eEE
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC--ELCR--LLR 487 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~--~~~~--l~~ 487 (608)
...+.||...-..--...+++++++|.+.+.. +|+ ...+++||++=-. .+.+ ....+. ++++ ++.
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~---~~~l~~Gd~~~i~---~~~~--H~~~~~~~~~~~~~~i~ 106 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDE---DFPVTKGDLIIIP---LDSE--HHVINNNQEDFHFYTIW 106 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTE---EEEEETTCEEEEC---TTCC--EEEEECSSSCEEEEEEE
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCE---EEEECCCcEEEEC---CCCc--EEeEeCCCCCEEEEEEE
Confidence 34556665332222234589999999998876 444 3578899865322 1233 334443 3333 345
Q ss_pred echhhHHHHHHH
Q 007323 488 IDKQSFTNIIDI 499 (608)
Q Consensus 488 l~~~~~~~ll~~ 499 (608)
++.+-+..+...
T Consensus 107 f~~~~~~~~~~~ 118 (128)
T 4i4a_A 107 WDKESTLNFLTR 118 (128)
T ss_dssp ECHHHHHHHHHH
T ss_pred ECHHHHHHHHHh
Confidence 555555554443
No 255
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=31.24 E-value=83 Score=27.90 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=28.5
Q ss_pred eecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 414 ~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+.||...=.-.-+.+++|+|++|.++... .+|+ ...+++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v--~~g~---~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHL--RNAP---DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEE--TTSC---CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEE--CCCC---EEecCCCCEEE
Confidence 444554432223446789999999998765 2233 35688888653
No 256
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=31.08 E-value=58 Score=32.83 Aligned_cols=61 Identities=7% Similarity=0.160 Sum_probs=45.4
Q ss_pred HHHHHHHceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 403 INQIVIRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 403 l~~l~~~~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+..+-..+....+.||-+.--- .-.++++.++++|++.+...+.+|+......+.+||+|=
T Consensus 318 L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 379 (466)
T 3kgl_A 318 LRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLS 379 (466)
T ss_dssp HHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEE
Confidence 4444456667788888765322 234678999999999999888888776777899999873
No 257
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=30.56 E-value=1.9e+02 Score=26.03 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=40.6
Q ss_pred eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
...+.||...-..- .+++.+|++|++.+.. +|++ ..+++||++=-. .+.+. ..+..++++++.+
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~~---~~l~~Gd~~~~p---~~~~H--~~~n~~~~~~l~v 117 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGET---RTLREYDYVYLP---AGEKH--MLTAKTDARVSVF 117 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSCE---EEECTTEEEEEC---TTCCC--EEEEEEEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCEE---EEECCCCEEEEC---CCCCE--EEEeCCCEEEEEE
Confidence 45677876654432 6789999999999875 5543 578999975432 23443 3443366665554
No 258
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}
Probab=29.16 E-value=1.9e+02 Score=26.67 Aligned_cols=78 Identities=12% Similarity=-0.014 Sum_probs=53.9
Q ss_pred HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEE-eCCCCeecch---hhhcCCCcccEEEEeceee
Q 007323 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSY-LHPNSSFGEV---SILCNIPQPYTVQVCELCR 484 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~-l~~G~~fGe~---~~~~~~~~~~~~~a~~~~~ 484 (608)
.+....+.+|+..-.+-+..+...+++.|.+.+.. +|.. ... -...++|... ++.-+.-..+++.|.++++
T Consensus 30 ~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~---~g~~--~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~ 104 (270)
T 2qjv_A 30 GFDVWQLXAGESITLPSDERERCLVLVAGLASVXA---ADSF--FYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLE 104 (270)
T ss_dssp EEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE---TTEE--EEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEE
T ss_pred EEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE---CCEE--EeccccccccccCCCCcEEEECCCCEEEEEecCCce
Confidence 45677889999987777666777888899998865 5542 222 3456777765 3333444478899998888
Q ss_pred eEEechh
Q 007323 485 LLRIDKQ 491 (608)
Q Consensus 485 l~~l~~~ 491 (608)
++.....
T Consensus 105 ~~v~sAp 111 (270)
T 2qjv_A 105 LAVCSAP 111 (270)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 8776653
No 259
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=28.61 E-value=80 Score=29.33 Aligned_cols=49 Identities=20% Similarity=0.106 Sum_probs=36.4
Q ss_pred HceeeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 409 RLHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....++||..+-. +-...++.++|++|+..+.. +|+. ..+++||++-
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~~---~~v~~GD~~~ 241 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQDW---VEVEAGDFMW 241 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTEE---EEEETTCEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCEE---EEeCCCCEEE
Confidence 466788999998864 44445578999999998764 5543 6789999753
No 260
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=28.23 E-value=1.4e+02 Score=24.32 Aligned_cols=51 Identities=14% Similarity=-0.068 Sum_probs=30.1
Q ss_pred eeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 412 EEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 412 ~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...+.||..+-. .-...+.+++|++|.+.+...+..+.......+.+||++
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 446677765422 222345899999999998763221111112568899864
No 261
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=28.04 E-value=53 Score=32.41 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=40.3
Q ss_pred HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
.+....+.||..+...--..+++++|++|+..+...+.++++ ...+++||+
T Consensus 53 s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~--~~~l~~GDv 103 (397)
T 2phl_A 53 RLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR--EYFFLTSDN 103 (397)
T ss_dssp EEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE--EEEEEESSC
T ss_pred EEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE--EEEECCCCc
Confidence 455778889888766555677999999999998887766654 578999998
No 262
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=27.16 E-value=4 Score=40.05 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=6.1
Q ss_pred HHHHHHHHHhc
Q 007323 222 IAACIFYYLAT 232 (608)
Q Consensus 222 ~~ac~~~~~~~ 232 (608)
+..++|+.+..
T Consensus 162 ~~~s~y~~~~t 172 (355)
T 3beh_A 162 IPQAMWWAVVT 172 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34666666543
No 263
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=26.94 E-value=1.1e+02 Score=28.31 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=41.2
Q ss_pred eEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechh
Q 007323 420 VIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ 491 (608)
Q Consensus 420 ~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~ 491 (608)
..++ -+..+++|++++|.+.+-..+ +|+ ..-..+++|++|=... +. +++-++..+|..+.+.+.
T Consensus 44 ~d~H-~~~~dE~FyqlkG~m~l~~~d-~g~-~~~V~i~eGemfllP~---gv--~HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 44 KDYH-IEEGEEVFYQLEGDMVLRVLE-QGK-HRDVVIRQGEIFLLPA---RV--PHSPQRFANTVGLVVERR 107 (286)
T ss_dssp CCEE-ECSSCEEEEEEESCEEEEEEE-TTE-EEEEEECTTEEEEECT---TC--CEEEEECTTCEEEEEEEC
T ss_pred ccCc-CCCCCeEEEEEeCeEEEEEEe-CCc-eeeEEECCCeEEEeCC---CC--CcCCcccCCeEEEEEeec
Confidence 4455 456789999999999988754 353 2346789998774331 22 344445666777666644
No 264
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=26.69 E-value=99 Score=30.20 Aligned_cols=53 Identities=9% Similarity=-0.060 Sum_probs=35.8
Q ss_pred ceeeeecCCCeEEccCCcc-CeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIMEKGNVV-DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~-~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||...-..--+. +++++|++|++.+...+.+|+. ....+++||++=
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~-~~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHA-RTFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEE-EEEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcE-EEEEEcCCCEEE
Confidence 3456778887764332333 7899999999998765455542 245788999764
No 265
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=26.38 E-value=66 Score=31.69 Aligned_cols=75 Identities=12% Similarity=0.040 Sum_probs=46.6
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEe---ceeeeE
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC---ELCRLL 486 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~---~~~~l~ 486 (608)
+....+.||+..-..--..+.+|+|++|+..+.. +|+ ...+++||+|=.-+ +.. ...... +++.++
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~ge---~~~~~~GD~~~iP~---g~~--H~~~N~g~~e~~~ll 364 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GGK---RFDWSEHDIFCVPA---WTW--HEHCNTQERDDACLF 364 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TTE---EEEECTTCEEEECT---TCC--EEEEECCSSCCEEEE
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CCE---EEEEeCCCEEEECC---CCe--EEeEeCCCCCCeEEE
Confidence 3556788888765554556689999999986543 554 36789999865442 222 233332 356666
Q ss_pred EechhhHHH
Q 007323 487 RIDKQSFTN 495 (608)
Q Consensus 487 ~l~~~~~~~ 495 (608)
.+....+..
T Consensus 365 ~i~D~Pl~~ 373 (394)
T 3bu7_A 365 SFNDFPVME 373 (394)
T ss_dssp EEESHHHHH
T ss_pred EeeCHHHHH
Confidence 665544443
No 266
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=25.94 E-value=1.2e+02 Score=22.81 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=37.9
Q ss_pred eeeeecCCCeEEccCCc-cCeE-EEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEE
Q 007323 411 HEEFFLPGEVIMEKGNV-VDQL-YFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLR 487 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~-~~~l-y~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~ 487 (608)
....+.+|..+-..--. ...+ +++++|.+.+.. .+|+. ..+.+||++=-. .+. .....+.+++.++.
T Consensus 36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~--~~~~~---~~l~~Gd~~~ip---~~~--~H~~~~~~~~~~l~ 104 (110)
T 2q30_A 36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG--DGDAV---IPAPRGAVLVAP---IST--PHGVRAVTDMKVLV 104 (110)
T ss_dssp EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC--GGGCE---EEECTTEEEEEE---TTS--CEEEEESSSEEEEE
T ss_pred EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe--CCCEE---EEECCCCEEEeC---CCC--cEEEEEcCCcEEEE
Confidence 34466787766432222 2456 799999998764 11332 568899865322 122 34555555555443
No 267
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=25.82 E-value=75 Score=28.35 Aligned_cols=17 Identities=18% Similarity=-0.027 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhccccC
Q 007323 267 ITSMYASVVTMTTVGYG 283 (608)
Q Consensus 267 ~~s~y~~~~t~ttvGyg 283 (608)
..++..|+.|+..+--|
T Consensus 163 F~~~~~a~~~lf~~~t~ 179 (229)
T 4dxw_A 163 WGDLGISLITLFQVLTL 179 (229)
T ss_dssp TSSHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHcc
Confidence 44555555555544433
No 268
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=25.68 E-value=68 Score=29.59 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=42.5
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccC-CceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN-GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~-g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
+-...+.||.---......+++.+|++|++.+.. + |++ ..+++|+++=.. .+. ..+.+..+.++++.+
T Consensus 72 ~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l---~~g~~---~~L~~Gds~y~p---~~~--~H~~~N~~~Ar~l~V 140 (266)
T 4e2q_A 72 MYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN---TSSSS---KKLTVDSYAYLP---PNF--HHSLDCVESATLVVF 140 (266)
T ss_dssp EEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC-----CCC---EEECTTEEEEEC---TTC--CCEEEESSCEEEEEE
T ss_pred EEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE---CCCcE---EEEcCCCEEEEC---CCC--CEEEEeCCCEEEEEE
Confidence 3355777776532222345689999999999875 4 543 578999865432 122 234444566777766
Q ss_pred ch
Q 007323 489 DK 490 (608)
Q Consensus 489 ~~ 490 (608)
.+
T Consensus 141 ~k 142 (266)
T 4e2q_A 141 ER 142 (266)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 269
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=25.32 E-value=71 Score=31.77 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=39.6
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||-.+...--.++.+++|++|+..+-..+.++. ....+++||++-
T Consensus 46 l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~--~~~~l~~GDv~~ 97 (418)
T 3s7i_A 46 IVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNR--KSFNLDEGHALR 97 (418)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE--EEEEEETTEEEE
T ss_pred EEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCE--EEEEecCCCEEE
Confidence 3455677888877775567789999999998887766543 467899999873
No 270
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=24.83 E-value=1.8e+02 Score=23.62 Aligned_cols=48 Identities=19% Similarity=0.132 Sum_probs=30.9
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
....+.||..+-..--....++++++|.+.+.. +|++ ...+.+||++=
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~--~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP--ARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC--CEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE--EEEECCCCEEE
Confidence 345667777653222234689999999998865 3432 24678998763
No 271
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=24.59 E-value=26 Score=22.13 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=14.9
Q ss_pred HHHHHhhCCHHHHHHHHHH
Q 007323 365 EASVLQDIPISIRAKISQT 383 (608)
Q Consensus 365 ~~~~l~~lp~~Lr~~i~~~ 383 (608)
+.+.++.||..++.|+...
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 5678899999998887544
No 272
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=23.92 E-value=98 Score=23.87 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=23.7
Q ss_pred CccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 426 NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 426 ~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
...+++++|++|++.+.. +|++ ....+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~---~~~~-~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC---EGDT-APRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEE---TTCS-SCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEE---CCEE-EEEEECCCCEEE
Confidence 345689999999999876 3332 114689999754
No 273
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.90 E-value=1.1e+02 Score=27.73 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=32.6
Q ss_pred ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS 461 (608)
Q Consensus 410 ~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~ 461 (608)
+....+.||..+-.---+...+++|++|.+.+.. +|+. ..+.+||.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~~~---~~l~~Gd~ 81 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GDVT---RKMTALES 81 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTTC
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CCEE---EEECCCCE
Confidence 4445678888765444446689999999999875 4443 57889984
No 274
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=23.75 E-value=1.1e+02 Score=28.17 Aligned_cols=48 Identities=13% Similarity=0.004 Sum_probs=33.0
Q ss_pred ceeeeecCCCeEEc-cCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 410 LHEEFFLPGEVIME-KGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 410 ~~~~~~~~g~~i~~-~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
+....+.||..+-. .--..+++++|++|++.+.. +|+ ...+++||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~~---~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNE---WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTE---EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CCE---EEEECCCCEEE
Confidence 34557788876633 22245689999999999875 443 36789999753
No 275
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=22.92 E-value=1.3e+02 Score=27.19 Aligned_cols=47 Identities=9% Similarity=-0.048 Sum_probs=31.9
Q ss_pred eeeecC-CCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 412 EEFFLP-GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 412 ~~~~~~-g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
...++| |..+-..--+...++++++|.+.+.. +|++ ..+.+||.+-.
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~---~~l~~Gd~i~i 196 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV---EGCT---VEMKFGTAYFC 196 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE---TTEE---EEECTTCEEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE---CCEE---EEECCCCEEEE
Confidence 345778 76654433345689999999999875 4443 46899997543
No 276
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=22.73 E-value=1e+02 Score=25.57 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=30.5
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCC---ceeeeEEeCCCCee
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG---TEDYVSYLHPNSSF 462 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g---~~~~~~~l~~G~~f 462 (608)
....+.||...-..--....+++|++|.+.+...+.++ .+.....+.+||++
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i 98 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTF 98 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEE
Confidence 34456777654221123457999999999987632111 11124578999875
No 277
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=22.68 E-value=83 Score=31.01 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=41.3
Q ss_pred HHceeeeecCCCeEEcc-CCccCeEEEEEeeEEEEEEecc------CCceeeeEEeCCCCeecc
Q 007323 408 IRLHEEFFLPGEVIMEK-GNVVDQLYFVCLGKLEEVGIEE------NGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 408 ~~~~~~~~~~g~~i~~~-g~~~~~ly~i~~G~v~~~~~~~------~g~~~~~~~l~~G~~fGe 464 (608)
..+....+.||-+...- .-.+.+++++++|+..+...+. +|.......+.+||+|=-
T Consensus 239 is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vv 302 (397)
T 2phl_A 239 VLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVI 302 (397)
T ss_dssp EEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEE
T ss_pred eeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEE
Confidence 34566778888765432 2346789999999998888776 566667788999998743
No 278
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=22.17 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=25.2
Q ss_pred CeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 429 ~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
+++++|++|++.+...+..|+ .....+++||++
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~-~~~~~l~~GD~v 129 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGD-AKWISMEPGTVV 129 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCC-EEEEEECTTCEE
T ss_pred CEEEEEEcCEEEEEEcCcCCc-EEEEEECCCcEE
Confidence 589999999999887544453 345679999975
No 279
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=21.99 E-value=1.7e+02 Score=25.37 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=43.9
Q ss_pred HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEE--eceeeeE
Q 007323 409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV--CELCRLL 486 (608)
Q Consensus 409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a--~~~~~l~ 486 (608)
.+....+.||..+-...-...++.+|++|... ++. ..+.+||++=.- .+ ...+..+ .+.|.++
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~------~~~~~Gd~~~~p---~g--~~H~p~a~~~~gc~~l 190 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DET------DRFGAGDIEIAD---QE--LEHTPVAERGLDCICL 190 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSS------SEEETTCEEEEC---SS--CCCCCEECSSSCEEEE
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCc------EEECCCeEEEeC---cC--CccCCEeCCCCCEEEE
Confidence 44577899999998877788899999999965 222 357888874322 12 2334555 6677776
Q ss_pred Ee
Q 007323 487 RI 488 (608)
Q Consensus 487 ~l 488 (608)
.+
T Consensus 191 ~~ 192 (195)
T 2q1z_B 191 AA 192 (195)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 280
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=21.84 E-value=1.6e+02 Score=29.86 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHhhccccCCcccC--ChhhHHHHHHHHHHHHH
Q 007323 262 FWKSYITSMYASVVTMTTVGYGDVHAV--NLREMVFIMIYVSFDMI 305 (608)
Q Consensus 262 ~~~~Y~~s~y~~~~t~ttvGygdi~p~--~~~e~~~~~~~~~~g~~ 305 (608)
..++...|++=+++..||.||....-. +..-.++.+++|++|-+
T Consensus 303 ~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~ 348 (494)
T 3pjz_A 303 PYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGC 348 (494)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCC
Confidence 456778899999999999998854433 33445555666666543
No 281
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=21.37 E-value=73 Score=31.38 Aligned_cols=69 Identities=13% Similarity=-0.046 Sum_probs=42.9
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEE-eceeeeEEec
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV-CELCRLLRID 489 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a-~~~~~l~~l~ 489 (608)
....+.||+.+-..--....+|||++|+-.... .+|++ ..+++||++=.- .-....... .++..+..++
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~--v~G~~---~~~~~GD~i~~P-----~g~~H~~~N~~gde~l~~l~ 195 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI--VDGHK---VELGANDFVLTP-----NGTWHEHGILESGTECIWQD 195 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE--ETTEE---EEECTTCEEEEC-----TTCCEEEEECTTCCCEEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE--ECCEE---EEEcCCCEEEEC-----cCCCEEEEcCCCCCCEEEEE
Confidence 567888888775544445589999999875533 35653 568999976432 112344555 5555554443
No 282
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=21.32 E-value=1.1e+02 Score=27.76 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=24.3
Q ss_pred cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323 428 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE 464 (608)
Q Consensus 428 ~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe 464 (608)
.++++.|++|++.+.. ++|.. ..+++||.+--
T Consensus 186 ~~E~~~ILeG~v~lt~--~~G~~---~~~~aGD~~~~ 217 (238)
T 3myx_A 186 IHELMNLIEGRVVLSL--ENGSS---LTVNTGDTVFV 217 (238)
T ss_dssp SCEEEEEEECCEEEEE--TTSCE---EEECTTCEEEE
T ss_pred CCEEEEEEEeEEEEEe--CCCCE---EEECCCCEEEE
Confidence 4689999999999865 45653 57899997653
No 283
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=21.31 E-value=2.2e+02 Score=26.23 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=50.2
Q ss_pred eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEech
Q 007323 411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490 (608)
Q Consensus 411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~ 490 (608)
+...|.+|+.+..+.+. +.++.+++|+..+.. +|.+ ..+.+||..- -.....++..+.++|.++.+..
T Consensus 210 eV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt~---~~q~---~~L~~~DsLL-----Ipa~~~y~~~r~~gsv~L~I~~ 277 (286)
T 2qnk_A 210 QVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVTM---GGRR---LSLAPDDSLL-----VLAGTSYAWERTQGSVALSVTQ 277 (286)
T ss_dssp EEEEECSEEEEECCCSS-CEEEEEEESCEEEEE---TTEE---EEECTTEEEE-----ECTTCCEEEEECTTCEEEEEEE
T ss_pred EEEEEcCCccccccCcC-cEEEEEEcCceEEEE---CCeE---EeccCCCEEE-----ecCCCeEEEEecCCeEEEEEEE
Confidence 45569999999888887 899999999987654 4543 5678887532 2223457888888888888765
Q ss_pred h
Q 007323 491 Q 491 (608)
Q Consensus 491 ~ 491 (608)
+
T Consensus 278 ~ 278 (286)
T 2qnk_A 278 D 278 (286)
T ss_dssp C
T ss_pred C
Confidence 3
No 284
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=20.85 E-value=73 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=20.6
Q ss_pred cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323 428 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462 (608)
Q Consensus 428 ~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f 462 (608)
...++++++|++.+.. ..+|+ ...+++||++
T Consensus 59 ~~e~~~vl~G~~~~~~-~~~~~---~~~l~~Gd~~ 89 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLVL-PDQGR---TEEVGPGEAI 89 (145)
T ss_dssp SCEEEEEEEECEEEEE-GGGTE---EEEECTTCEE
T ss_pred CceEEEEEEeEEEEEE-eECCE---EEEECCCCEE
Confidence 3456679999998761 01343 3678899865
No 285
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=20.77 E-value=1.2e+02 Score=27.73 Aligned_cols=68 Identities=7% Similarity=-0.022 Sum_probs=0.0
Q ss_pred eeeecCCCeEEccCCc--cCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323 412 EEFFLPGEVIMEKGNV--VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488 (608)
Q Consensus 412 ~~~~~~g~~i~~~g~~--~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l 488 (608)
...+.||...-..--. .+++++|++|++.+.. +|++ ..+++||++--. .+.+....-...+.++++.+
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~~---~~L~~Gd~~~~~---~~~~H~~~N~~~~~~~~l~v 132 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGKT---FALSEGGYLYCP---PGSLMTFVNAQAEDSQIFLY 132 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTEE---EEEETTEEEEEC---TTCCCEEEECSSSCEEEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCEE---EEECCCCEEEEC---CCCCEEEEeCCCCCEEEEEE
No 286
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=20.54 E-value=49 Score=23.20 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=11.5
Q ss_pred HHhhCCHHHHHHHHH
Q 007323 368 VLQDIPISIRAKISQ 382 (608)
Q Consensus 368 ~l~~lp~~Lr~~i~~ 382 (608)
++.+||++||++|..
T Consensus 8 wL~~LP~~Lq~kV~a 22 (70)
T 2lh0_A 8 FLDELPESLSRKIGT 22 (70)
T ss_dssp GGGGSCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 678888888888743
No 287
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=20.51 E-value=1.9e+02 Score=25.13 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=30.4
Q ss_pred cccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCcc-CeEEEE
Q 007323 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVV-DQLYFV 434 (608)
Q Consensus 390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~-~~ly~i 434 (608)
-++|.|++++-.+-.+.+.. -+.||+|+++...+ +++-+.
T Consensus 6 I~HP~F~n~~~~qAe~~L~~-----~~~Ge~iIRPSSkg~dhLtvT 46 (197)
T 3or8_A 6 INHPYYFPFNGKQAEDYLRS-----KERGDFVIRQSSRGDDHLAIT 46 (197)
T ss_dssp CCCTTEECCCHHHHHHHHTT-----SCTTCEEEEECSSCTTEEEEE
T ss_pred cCCCCcCCCCHHHHHHHHhc-----CCCCCEEEeeCCCCCCcEEEE
Confidence 36899999998887777654 26899999999874 455443
No 288
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=20.25 E-value=1.6e+02 Score=27.14 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=36.2
Q ss_pred HceeeeecCCCeEE-ccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323 409 RLHEEFFLPGEVIM-EKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463 (608)
Q Consensus 409 ~~~~~~~~~g~~i~-~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG 463 (608)
.+....+.||..+= .+--..++-++|++|+..+.. +|+. ..+++||++=
T Consensus 187 ~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l---~~~~---~~V~~GD~i~ 236 (266)
T 4e2q_A 187 NIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL---GDNW---YPVQAGDVIW 236 (266)
T ss_dssp EEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE---TTEE---EEEETTCEEE
T ss_pred EEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE---CCEE---EEecCCCEEE
Confidence 45677899999984 455566789999999987764 4543 5678999753
Done!